Geological Mapping Uses Landsat 4-5TM Satellite Data in Manlai Soum of Omnogovi Aimag

NASA Astrophysics Data System (ADS)

Norovsuren, B.

2014-12-01

Author: Bayanmonkh N1, Undram.G1, Tsolmon.R2, Ariunzul.Ya1, Bayartungalag B31 Environmental Research Information and Study Center 2NUM-ITC-UNESCO Space Science and Remote Sensing International Laboratory, National University of Mongolia 3Geology and Hydrology School, Korea University KEY WORDS: geology, mineral resources, fracture, structure, lithologyABSTRACTGeologic map is the most important map for mining when it does exploration job. In Mongolia geological map completed by Russian geologists which is done by earlier technology. Those maps doesn't satisfy for present requirements. Thus we want to study improve geological map which includes fracture, structural map and lithology use Landsat TM4-5 satellite data. If we can produce a geological map from satellite data with more specification then geologist can explain or read mineralogy very easily. We searched all methodology and researches of every single element of geological mapping. Then we used 3 different remote sensing methodologies to produce structural and lithology and fracture map based on geographic information system's softwares. There can be found a visible lithology border improvement and understandable structural map and we found fracture of the Russian geological map has a lot of distortion. The result of research geologist can read mineralogy elements very easy and discovered 3 unfound important elements from satellite image.

An exponentiation method for XML element retrieval.

PubMed

Wichaiwong, Tanakorn

2014-01-01

XML document is now widely used for modelling and storing structured documents. The structure is very rich and carries important information about contents and their relationships, for example, e-Commerce. XML data-centric collections require query terms allowing users to specify constraints on the document structure; mapping structure queries and assigning the weight are significant for the set of possibly relevant documents with respect to structural conditions. In this paper, we present an extension to the MEXIR search system that supports the combination of structural and content queries in the form of content-and-structure queries, which we call the Exponentiation function. It has been shown the structural information improve the effectiveness of the search system up to 52.60% over the baseline BM25 at MAP.

An integrated photogrammetric and spatial database management system for producing fully structured data using aerial and remote sensing images.

PubMed

Ahmadi, Farshid Farnood; Ebadi, Hamid

2009-01-01

3D spatial data acquired from aerial and remote sensing images by photogrammetric techniques is one of the most accurate and economic data sources for GIS, map production, and spatial data updating. However, there are still many problems concerning storage, structuring and appropriate management of spatial data obtained using these techniques. According to the capabilities of spatial database management systems (SDBMSs); direct integration of photogrammetric and spatial database management systems can save time and cost of producing and updating digital maps. This integration is accomplished by replacing digital maps with a single spatial database. Applying spatial databases overcomes the problem of managing spatial and attributes data in a coupled approach. This management approach is one of the main problems in GISs for using map products of photogrammetric workstations. Also by the means of these integrated systems, providing structured spatial data, based on OGC (Open GIS Consortium) standards and topological relations between different feature classes, is possible at the time of feature digitizing process. In this paper, the integration of photogrammetric systems and SDBMSs is evaluated. Then, different levels of integration are described. Finally design, implementation and test of a software package called Integrated Photogrammetric and Oracle Spatial Systems (IPOSS) is presented.

Endovascular brain intervention and mapping in a dog experimental model using magnetically-guided micro-catheter technology.

PubMed

Kara, Tomas; Leinveber, Pavel; Vlasin, Michal; Jurak, Pavel; Novak, Miroslav; Novak, Zdenek; Chrastina, Jan; Czechowicz, Krzysztof; Belehrad, Milos; Asirvatham, Samuel J

2014-06-01

Despite the substantial progress that has been achieved in interventional cardiology and cardiac electrophysiology, endovascular intervention for the diagnosis and treatment of central nervous system (CNS) disorders such as stroke, epilepsy and CNS malignancy is still limited, particularly due to highly tortuous nature of the cerebral arterial and venous system. Existing interventional devices and techniques enable only limited and complicated access especially into intra-cerebral vessels. The aim of this study was to develop a micro-catheter magnetically-guided technology specifically designed for endovascular intervention and mapping in deep CNS vascular structures. Mapping of electrical brain activity was performed via the venous system on an animal dog model with the support of the NIOBE II system. A novel micro-catheter specially designed for endovascular interventions in the CNS, with the support of the NIOBE II technology, was able to reach safely deep intra-cerebral venous structures and map the electrical activity there. Such structures are not currently accessible using standard catheters. This is the first study demonstrating successful use of a new micro-catheter in combination with NIOBE II technology for endovascular intervention in the brain.

Joined up Thinking? Evaluating the Use of Concept-Mapping to Develop Complex System Learning

ERIC Educational Resources Information Center

Stewart, Martyn

2012-01-01

In the physical and natural sciences, the complexity of natural systems and their interactions is becoming better understood. With increased emphasis on learning about complex systems, students will be encountering concepts that are dynamic, ill-structured and interconnected. Concept-mapping is a method considered particularly valuable for…

Statistical Significance of Optical Map Alignments

PubMed Central

Sarkar, Deepayan; Goldstein, Steve; Schwartz, David C.

2012-01-01

Abstract The Optical Mapping System constructs ordered restriction maps spanning entire genomes through the assembly and analysis of large datasets comprising individually analyzed genomic DNA molecules. Such restriction maps uniquely reveal mammalian genome structure and variation, but also raise computational and statistical questions beyond those that have been solved in the analysis of smaller, microbial genomes. We address the problem of how to filter maps that align poorly to a reference genome. We obtain map-specific thresholds that control errors and improve iterative assembly. We also show how an optimal self-alignment score provides an accurate approximation to the probability of alignment, which is useful in applications seeking to identify structural genomic abnormalities. PMID:22506568

Experimental evaluation of a neural-oscillator-driven active mass damper system

NASA Astrophysics Data System (ADS)

Iba, Daisuke; Hongu, Junichi

2014-03-01

This paper proposes a new active dynamic absorber control system for high-rise buildings using a neural oscillator and a map, which estimates the amplitude level of the oscillator, and shows some experimental results by using an apparatus, which realizes the proposed control algorithm. The proposed system decides the travel distance and direction of the auxiliary mass of the dynamic absorber using the output of oscillator, which is the filtering result of structure acceleration responses by the property of the oscillator, and Amplitude-Phase map (AP-map) for estimation of the structural response in specific frequency between synchronization region, and then, transfer the auxiliary mass to the predetermined location by using a position controller. In addition, the developed active dynamic absorber system is mounted on the top of the experimental single degree of freedom structure, which represents high-rise buildings, and consists of the auxiliary mass, a DC motor, a ball screw, a microcomputer, a laser displacement sensor, and an acceleration sensor. The proposed AP-map and the algorithm to determine the travel direction of the mass using the oscillator output are embedded in the microcomputer. This paper starts by illuminating the relation among subsystems of the proposed system with reference to a block diagram, and then, shows experimental responses of the whole system excited by earthquakes to confirm the validity of the proposed system.

Development of management information system for land in mine area based on MapInfo

NASA Astrophysics Data System (ADS)

Wang, Shi-Dong; Liu, Chuang-Hua; Wang, Xin-Chuang; Pan, Yan-Yu

2008-10-01

MapInfo is current a popular GIS software. This paper introduces characters of MapInfo and GIS second development methods offered by MapInfo, which include three ones based on MapBasic, OLE automation, and MapX control usage respectively. Taking development of land management information system in mine area for example, in the paper, the method of developing GIS applications based on MapX has been discussed, as well as development of land management information system in mine area has been introduced in detail, including development environment, overall design, design and realization of every function module, and simple application of system, etc. The system uses MapX 5.0 and Visual Basic 6.0 as development platform, takes SQL Server 2005 as back-end database, and adopts Matlab 6.5 to calculate number in back-end. On the basis of integrated design, the system develops eight modules including start-up, layer control, spatial query, spatial analysis, data editing, application model, document management, results output. The system can be used in mine area for cadastral management, land use structure optimization, land reclamation, land evaluation, analysis and forecasting for land in mine area and environmental disruption, thematic mapping, and so on.

Detection of endometrial lesions by degree of linear polarization maps

NASA Astrophysics Data System (ADS)

Kim, Jihoon; Fazleabas, Asgerally; Walsh, Joseph T.

2010-02-01

Endometriosis is one of the most common causes of chronic pelvic pain and infertility and is characterized by the presence of endometrial glands and stroma outside of the uterine cavity. A novel laparoscopic polarization imaging system was designed to detect endometriosis by imaging endometrial lesions. Linearly polarized light with varying incident polarization angles illuminated endometrial lesions. Degree of linear polarization image maps of endometrial lesions were constructed by using remitted polarized light. The image maps were compared with regular laparoscopy image. The degree of linear polarization map contributed to the detection of endometriosis by revealing structures inside the lesion. The utilization of rotating incident polarization angle (IPA) for the linearly polarized light provides extended understanding of endometrial lesions. The developed polarization system with varying IPA and the collected image maps could provide improved characterization of endometrial lesions via higher visibility of the structure of the lesions and thereby improve diagnosis of endometriosis.

An Exponentiation Method for XML Element Retrieval

PubMed Central

2014-01-01

XML document is now widely used for modelling and storing structured documents. The structure is very rich and carries important information about contents and their relationships, for example, e-Commerce. XML data-centric collections require query terms allowing users to specify constraints on the document structure; mapping structure queries and assigning the weight are significant for the set of possibly relevant documents with respect to structural conditions. In this paper, we present an extension to the MEXIR search system that supports the combination of structural and content queries in the form of content-and-structure queries, which we call the Exponentiation function. It has been shown the structural information improve the effectiveness of the search system up to 52.60% over the baseline BM25 at MAP. PMID:24696643

Multiseasonal Tree Crown Structure Mapping with Point Clouds from OTS Quadrocopter Systems

NASA Astrophysics Data System (ADS)

Hese, S.; Behrendt, F.

2017-08-01

OTF (Off The Shelf) quadro copter systems provide a cost effective (below 2000 Euro), flexible and mobile platform for high resolution point cloud mapping. Various studies showed the full potential of these small and flexible platforms. Especially in very tight and complex 3D environments the automatic obstacle avoidance, low copter weight, long flight times and precise maneuvering are important advantages of these small OTS systems in comparison with larger octocopter systems. This study examines the potential of the DJI Phantom 4 pro series and the Phantom 3A series for within-stand and forest tree crown 3D point cloud mapping using both within stand oblique imaging in different altitude levels and data captured from a nadir perspective. On a test site in Brandenburg/Germany a beach crown was selected and measured with 3 different altitude levels in Point Of Interest (POI) mode with oblique data capturing and deriving one nadir mosaic created with 85/85 % overlap using Drone Deploy automatic mapping software. Three different flight campaigns were performed, one in September 2016 (leaf-on), one in March 2017 (leaf-off) and one in May 2017 (leaf-on) to derive point clouds from different crown structure and phenological situations - covering the leaf-on and leafoff status of the tree crown. After height correction, the point clouds where used with GPS geo referencing to calculate voxel based densities on 50 × 10 × 10 cm voxel definitions using a topological network of chessboard image objects in 0,5 m height steps in an object based image processing environment. Comparison between leaf-off and leaf-on status was done on volume pixel definitions comparing the attributed point densities per volume and plotting the resulting values as a function of distance to the crown center. In the leaf-off status SFM (structure from motion) algorithms clearly identified the central stem and also secondary branch systems. While the penetration into the crown structure is limited in the leaf-on status (the point cloud is a mainly a description of the interpolated crown surface) - the visibility of the internal crown structure in leaf-off status allows to map also the internal tree structure up to and stopping at the secondary branch level system. When combined the leaf-on and leaf-off point clouds generate a comprehensive tree crown structure description that allows a low cost and detailed 3D crown structure mapping and potentially precise biomass mapping and/or internal structural differentiation of deciduous tree species types. Compared to TLS (Terrestrial Laser Scanning) based measurements the costs are neglectable and in the range of 1500-2500 €. This suggests the approach for low cost but fine scale in-situ applications and/or projects where TLS measurements cannot be derived and for less dense forest stands where POI flights can be performed. This study used the in-copter GPS measurements for geo referencing. Better absolute geo referencing results will be obtained with DGPS reference points. The study however clearly demonstrates the potential of OTS very low cost copter systems and the image attributed GPS measurements of the copter for the automatic calculation of complex 3D point clouds in a multi temporal tree crown mapping context.

Mapping of lithologic and structural units using multispectral imagery. [Afar-Triangle/Ethiopia and adjacent areas (Ethiopian Plateau, Somali Plateau, and parts of Yemen and Saudi Arabia)

NASA Technical Reports Server (NTRS)

Kronberg, P. (Principal Investigator)

1974-01-01

The author has identified the following significant results. ERTS-1 MSS imagery covering the Afar-Triangle/Ethiopia and adjacent regions (Ethiopian Plateau, Somali Plateau, and parts of Yemen and Saudi Arabi) was applied to the mapping of lithologic and structural units of the test area at a scale 1:1,000,000. Results of the geological evaluation of the ERTS-1 imagery of the Afar have proven the usefullness of this type of satellite data for regional geological mapping. Evaluation of the ERTS images also resulted in new aspects of the structural setting and tectonic development of the Afar-Triangle, where three large rift systems, the oceanic rifts of the Red Sea and Gulf of Aden and the continental East African rift system, seem to meet each other. Surface structures mapped by ERTS do not indicate that the oceanic rift of the Gulf of Aden (Sheba Ridge) continues into the area of continental crust west of the Gulf of Tadjura. ERTS data show that the Wonji fault belt of the African rift system does not enter or cut through the central Afar. The Aysha-Horst is not a Horst but an autochthonous spur of the Somali Plateau.

Using perceptual rules in interactive visualization

NASA Astrophysics Data System (ADS)

Rogowitz, Bernice E.; Treinish, Lloyd A.

1994-05-01

In visualization, data are represented as variations in grayscale, hue, shape, and texture. They can be mapped to lines, surfaces, and glyphs, and can be represented statically or in animation. In modem visualization systems, the choices for representing data seem unlimited. This is both a blessing and a curse, however, since the visual impression created by the visualization depends critically on which dimensions are selected for representing the data (Bertin, 1967; Tufte, 1983; Cleveland, 1991). In modem visualization systems, the user can interactively select many different mapping and representation operations, and can interactively select processing operations (e.g., applying a color map), realization operations (e.g., generating geometric structures such as contours or streamlines), and rendering operations (e.g., shading or ray-tracing). The user can, for example, map data to a color map, then apply contour lines, then shift the viewing angle, then change the color map again, etc. In many systems, the user can vary the choices for each operation, selecting, for example, particular color maps, contour characteristics, and shading techniques. The hope is that this process will eventually converge on a visual representation which expresses the structure of the data and effectively communicates its message in a way that meets the user's goals. Sometimes, however, it results in visual representations which are confusing, misleading, and garish.

Beam Position and Phase Monitor - Wire Mapping System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Watkins, Heath A; Shurter, Robert B.; Gilpatrick, John D.

2012-04-10

The Los Alamos Neutron Science Center (LANSCE) deploys many cylindrical beam position and phase monitors (BPPM) throughout the linac to measure the beam central position, phase and bunched-beam current. Each monitor is calibrated and qualified prior to installation to insure it meets LANSCE requirements. The BPPM wire mapping system is used to map the BPPM electrode offset, sensitivity and higher order coefficients. This system uses a three-axis motion table to position the wire antenna structure within the cavity, simulating the beam excitation of a BPPM at a fundamental frequency of 201.25 MHz. RF signal strength is measured and recorded formore » the four electrodes as the antenna position is updated. An effort is underway to extend the systems service to the LANSCE facility by replacing obsolete electronic hardware and taking advantage of software enhancements. This paper describes the upgraded wire positioning system's new hardware and software capabilities including its revised antenna structure, motion control interface, RF measurement equipment and Labview software upgrades. The main purpose of the wire mapping system at LANSCE is to characterize the amplitude response versus beam central position of BPPMs before they are installed in the beam line. The wire mapping system is able to simulate a beam using a thin wire and measure the signal response as the wire position is varied within the BPPM aperture.« less

Structures data collection for The National Map using volunteered geographic information

USGS Publications Warehouse

Poore, Barbara S.; Wolf, Eric B.; Korris, Erin M.; Walter, Jennifer L.; Matthews, Greg D.

2012-01-01

The U.S. Geological Survey (USGS) has historically sponsored volunteered data collection projects to enhance its topographic paper and digital map products. This report describes one phase of an ongoing project to encourage volunteers to contribute data to The National Map using online editing tools. The USGS recruited students studying geographic information systems (GIS) at the University of Colorado Denver and the University of Denver in the spring of 2011 to add data on structures - manmade features such as schools, hospitals, and libraries - to four quadrangles covering metropolitan Denver. The USGS customized a version of the online Potlatch editor created by the OpenStreetMap project and populated it with 30 structure types drawn from the Geographic Names Information System (GNIS), a USGS database of geographic features. The students corrected the location and attributes of these points and added information on structures that were missing. There were two rounds of quality control. Student volunteers reviewed each point, and an in-house review of each point by the USGS followed. Nine-hundred and thirty-eight structure points were initially downloaded from the USGS database. Editing and quality control resulted in 1,214 structure points that were subsequently added to The National Map. A post-project analysis of the data shows that after student edit and peer review, 92 percent of the points contributed by volunteers met National Map Accuracy Standards for horizontal accuracy. Lessons from this project will be applied to later phases. These include: simplifying editing tasks and the user interfaces, stressing to volunteers the importance of adding structures that are missing, and emphasizing the importance of conforming to editorial guidelines for formatting names and addresses of structures. The next phase of the project will encompass the entire State of Colorado and will allow any citizen to contribute structures data. Volunteers will benefit from this project by engaging with their local geography and contributing to a national resource of topographic information that remains in the public domain for anyone to download.

A two-way interface between limited Systems Biology Markup Language and R.

PubMed

Radivoyevitch, Tomas

2004-12-07

Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programming environment R is widely used by biostatisticians involved in microarray analyses. An interface between SBML and R does not exist, though one might be useful to R users interested in SBML, and SBML users interested in R. A model structure that parallels SBML to a limited degree is defined in R. An interface between this structure and SBML is provided through two function definitions: write.SBML() which maps this R model structure to SBML level 2, and read.SBML() which maps a limited range of SBML level 2 files back to R. A published model of purine metabolism is provided in this SBML-like format and used to test the interface. The model reproduces published time course responses before and after its mapping through SBML. List infrastructure preexisting in R makes it well-suited for manipulating SBML models. Further developments of this SBML-R interface seem to be warranted.

A two-way interface between limited Systems Biology Markup Language and R

PubMed Central

Radivoyevitch, Tomas

2004-01-01

Background Systems Biology Markup Language (SBML) is gaining broad usage as a standard for representing dynamical systems as data structures. The open source statistical programming environment R is widely used by biostatisticians involved in microarray analyses. An interface between SBML and R does not exist, though one might be useful to R users interested in SBML, and SBML users interested in R. Results A model structure that parallels SBML to a limited degree is defined in R. An interface between this structure and SBML is provided through two function definitions: write.SBML() which maps this R model structure to SBML level 2, and read.SBML() which maps a limited range of SBML level 2 files back to R. A published model of purine metabolism is provided in this SBML-like format and used to test the interface. The model reproduces published time course responses before and after its mapping through SBML. Conclusions List infrastructure preexisting in R makes it well-suited for manipulating SBML models. Further developments of this SBML-R interface seem to be warranted. PMID:15585059

Bedrock and structural geologic maps of eastern Candor Sulci, western Ceti Mensa, and southeastern Ceti Mensa, Candor Chasma, Valles Marineris region of Mars

USGS Publications Warehouse

Okubo, Chris H.; Gaither, Tenielle A.

2017-05-12

This map product contains a set of three 1:18,000-scale maps showing the geology and structure of study areas in the western Candor Chasma region of Valles Marineris, Mars. These maps are part of an informal series of large-scale maps and map-based topical studies aimed at refining current understanding of the geologic history of western Candor Chasma. The map bases consist of digital elevation models and orthorectified images derived from High Resolution Imaging Science Experiment (HiRISE) data. These maps are accompanied by geologic cross sections, colorized elevation maps, and cutouts of HiRISE images showing key superposition relations. Also included in this product is a Correlation of Map Units that integrates units across all three map areas, as well as an integrated Description of Map Units and an integrated Explanation of Map Symbols. The maps were assembled using ArcGIS software produced by Environmental Systems Research Institute (http://www.esri.com). The ArcGIS projects and databases associated with each map are included online as supplemental data.

Adhesion design maps for bio-inspired attachment systems.

PubMed

Spolenak, Ralph; Gorb, Stanislav; Arzt, Eduard

2005-01-01

Fibrous surface structures can improve the adhesion of objects to other surfaces. Animals, such as flies and geckos, take advantage of this principle by developing "hairy" contact structures which ensure controlled and repeatable adhesion and detachment. Mathematical models for fiber adhesion predict pronounced dependencies of contact performance on the geometry and the elastic properties of the fibers. In this paper the limits of such contacts imposed by fiber strength, fiber condensation, compliance, and ideal contact strength are modeled for spherical contact tips. Based on this, we introduce the concept of "adhesion design maps" which visualize the predicted mechanical behavior. The maps are useful for understanding biological systems and for guiding experimentation to achieve optimum artificial contacts.

Drainage identification analysis and mapping, phase 2.

DOT National Transportation Integrated Search

2017-01-01

Drainage Identification, Analysis and Mapping System (DIAMS) is a computerized database that captures and : stores relevant information associated with all aboveground and underground hydraulic structures belonging to : the New Jersey Department of T...

Mapping the Typology of Transition Systems in a Liberal Market Economy: The Case of Canada

ERIC Educational Resources Information Center

Arnold, Christine Helen; Wheelahan, Leesa; Moodie, Gavin; Beaulieu, Jacqueline; Taylor-Cline, Jean-Claude

2018-01-01

This research explores links between tertiary education institutions and between tertiary education and the labour market as determinants of provincial and national transition patterns in Canada. The study consists of a provincial analysis that maps the typology of transition systems across Canada's devolved federated tertiary education structure.…

Matching biomedical ontologies based on formal concept analysis.

PubMed

Zhao, Mengyi; Zhang, Songmao; Li, Weizhuo; Chen, Guowei

2018-03-19

The goal of ontology matching is to identify correspondences between entities from different yet overlapping ontologies so as to facilitate semantic integration, reuse and interoperability. As a well developed mathematical model for analyzing individuals and structuring concepts, Formal Concept Analysis (FCA) has been applied to ontology matching (OM) tasks since the beginning of OM research, whereas ontological knowledge exploited in FCA-based methods is limited. This motivates the study in this paper, i.e., to empower FCA with as much as ontological knowledge as possible for identifying mappings across ontologies. We propose a method based on Formal Concept Analysis to identify and validate mappings across ontologies, including one-to-one mappings, complex mappings and correspondences between object properties. Our method, called FCA-Map, incrementally generates a total of five types of formal contexts and extracts mappings from the lattices derived. First, the token-based formal context describes how class names, labels and synonyms share lexical tokens, leading to lexical mappings (anchors) across ontologies. Second, the relation-based formal context describes how classes are in taxonomic, partonomic and disjoint relationships with the anchors, leading to positive and negative structural evidence for validating the lexical matching. Third, the positive relation-based context can be used to discover structural mappings. Afterwards, the property-based formal context describes how object properties are used in axioms to connect anchor classes across ontologies, leading to property mappings. Last, the restriction-based formal context describes co-occurrence of classes across ontologies in anonymous ancestors of anchors, from which extended structural mappings and complex mappings can be identified. Evaluation on the Anatomy, the Large Biomedical Ontologies, and the Disease and Phenotype track of the 2016 Ontology Alignment Evaluation Initiative campaign demonstrates the effectiveness of FCA-Map and its competitiveness with the top-ranked systems. FCA-Map can achieve a better balance between precision and recall for large-scale domain ontologies through constructing multiple FCA structures, whereas it performs unsatisfactorily for smaller-sized ontologies with less lexical and semantic expressions. Compared with other FCA-based OM systems, the study in this paper is more comprehensive as an attempt to push the envelope of the Formal Concept Analysis formalism in ontology matching tasks. Five types of formal contexts are constructed incrementally, and their derived concept lattices are used to cluster the commonalities among classes at lexical and structural level, respectively. Experiments on large, real-world domain ontologies show promising results and reveal the power of FCA.

Mapping Health Needs to Support Health System Management in Poland

PubMed Central

Holecki, Tomasz; Romaniuk, Piotr; Woźniak-Holecka, Joanna; Szromek, Adam R.; Syrkiewicz-Świtała, Magdalena

2018-01-01

In Poland, following the example of other EU countries, the first maps of health needs prepared by the Ministry of Health were presented in 2016. The maps constitute a foundation for rational decision-making in the management of health care resources, being potentially useful for all actors in health system. This refers in particular to the institutions responsible for distribution of funds and contracting health service, but also for decision-makers, who determine the scope of funds to be utilized in the health system, or the structure of benefits provided to patients. Service providers are also addressees of the maps, to give them a basis for planning future activities. The article presents a structured assessment of the current state of affairs, based on recent experience and sets out likely directions for the development of health needs in mapping in Poland in the future. We discuss the criticism addressed toward maps by representatives of various groups acting in health care. It includes the lack of recognition of some of the key health needs, or wrong emphases, where much more attention is paid to the recognition of current resources in the health system, instead of making prognoses regarding the future developments of health needs. Nonetheless, we find that this instrument is potentially of high usability, in case of elimination of the existing weaknesses. PMID:29662876

Structural map of Kaposi sarcoma-associated herpesvirus RNA provides clues to molecular interactions | Center for Cancer Research

Cancer.gov

Scientists from CCR have generated a comprehensive structural map of Kaposi sarcoma-associated herpesvirus polyadenylated nuclear (PAN) RNA, a long non-coding RNA that helps the virus evade detection by its host’s immune system. The findings open new oppportunites to study the life cycle of this cancer-causing virus.  Learn more...

Journey to the Edges: Social Structures and Neural Maps of Intergroup Processes

PubMed Central

Fiske, Susan T.

2013-01-01

This article explores boundaries of the intellectual map of intergroup processes, going to the macro (social structure) boundary and the micro (neural systems) boundary. Both are illustrated by with my own and others’ work on social structures and on neural structures related to intergroup processes. Analyzing the impact of social structures on intergroup processes led to insights about distinct forms of sexism and underlies current work on forms of ageism. The stereotype content model also starts with the social structure of intergroup relations (interdependence and status) and predicts images, emotions, and behaviors. Social structure has much to offer the social psychology of intergroup processes. At the other, less explored boundary, social neuroscience addresses the effects of social contexts on neural systems relevant to intergroup processes. Both social structural and neural analyses circle back to traditional social psychology as converging indicators of intergroup processes. PMID:22435843

A unified approach for debugging is-a structure and mappings in networked taxonomies

PubMed Central

2013-01-01

Background With the increased use of ontologies and ontology mappings in semantically-enabled applications such as ontology-based search and data integration, the issue of detecting and repairing defects in ontologies and ontology mappings has become increasingly important. These defects can lead to wrong or incomplete results for the applications. Results We propose a unified framework for debugging the is-a structure of and mappings between taxonomies, the most used kind of ontologies. We present theory and algorithms as well as an implemented system RepOSE, that supports a domain expert in detecting and repairing missing and wrong is-a relations and mappings. We also discuss two experiments performed by domain experts: an experiment on the Anatomy ontologies from the Ontology Alignment Evaluation Initiative, and a debugging session for the Swedish National Food Agency. Conclusions Semantically-enabled applications need high quality ontologies and ontology mappings. One key aspect is the detection and removal of defects in the ontologies and ontology mappings. Our system RepOSE provides an environment that supports domain experts to deal with this issue. We have shown the usefulness of the approach in two experiments by detecting and repairing circa 200 and 30 defects, respectively. PMID:23548155

Damage mapping in structural health monitoring using a multi-grid architecture

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathews, V. John

2015-03-31

This paper presents a multi-grid architecture for tomography-based damage mapping of composite aerospace structures. The system employs an array of piezo-electric transducers bonded on the structure. Each transducer may be used as an actuator as well as a sensor. The structure is excited sequentially using the actuators and the guided waves arriving at the sensors in response to the excitations are recorded for further analysis. The sensor signals are compared to their baseline counterparts and a damage index is computed for each actuator-sensor pair. These damage indices are then used as inputs to the tomographic reconstruction system. Preliminary damage mapsmore » are reconstructed on multiple coordinate grids defined on the structure. These grids are shifted versions of each other where the shift is a fraction of the spatial sampling interval associated with each grid. These preliminary damage maps are then combined to provide a reconstruction that is more robust to measurement noise in the sensor signals and the ill-conditioned problem formulation for single-grid algorithms. Experimental results on a composite structure with complexity that is representative of aerospace structures included in the paper demonstrate that for sufficiently high sensor densities, the algorithm of this paper is capable of providing damage detection and characterization with accuracy comparable to traditional C-scan and A-scan-based ultrasound non-destructive inspection systems quickly and without human supervision.« less

A Configurational-Bias-Monte-Carlo Back-Mapping Algorithm for Efficient and Rapid Conversion of Coarse-Grained Water Structures Into Atomistic Models.

PubMed

Loeffler, Troy David; Chan, Henry; Narayanan, Badri; Cherukara, Mathew J; Gray, Stephen K; Sankaranarayanan, Subramanian K R S

2018-06-20

Coarse-grained molecular dynamics (MD) simulations represent a powerful approach to simulate longer time scale and larger length scale phenomena than those accessible to all-atom models. The gain in efficiency, however, comes at the cost of atomistic details. The reverse transformation, also known as back-mapping, of coarse grained beads into their atomistic constituents represents a major challenge. Most existing approaches are limited to specific molecules or specific force-fields and often rely on running a long time atomistic MD of the back-mapped configuration to arrive at an optimal solution. Such approaches are problematic when dealing with systems with high diffusion barriers. Here, we introduce a new extension of the configurational-bias-Monte-Carlo (CBMC) algorithm, which we term the crystalline-configurational-bias-Monte-Carlo (C-CBMC) algortihm, that allows rapid and efficient conversion of a coarse-grained model back into its atomistic representation. Although the method is generic, we use a coarse-grained water model as a representative example and demonstrate the back-mapping or reverse transformation for model systems ranging from the ice-liquid water interface to amorphous and crystalline ice configurations. A series of simulations using the TIP4P/Ice model are performed to compare the new CBMC method to several other standard Monte Carlo and Molecular Dynamics based back-mapping techniques. In all the cases, the C-CBMC algorithm is able to find optimal hydrogen bonded configuration many thousand evaluations/steps sooner than the other methods compared within this paper. For crystalline ice structures such as a hexagonal, cubic, and cubic-hexagonal stacking disorder structures, the C-CBMC was able to find structures that were between 0.05 and 0.1 eV/water molecule lower in energy than the ground state energies predicted by the other methods. Detailed analysis of the atomistic structures show a significantly better global hydrogen positioning when contrasted with the existing simpler back-mapping methods. Our results demonstrate the efficiency and efficacy of our new back-mapping approach, especially for crystalline systems where simple force-field based relaxations have a tendency to get trapped in local minima.

A Map/INS/Wi-Fi Integrated System for Indoor Location-Based Service Applications

PubMed Central

Yu, Chunyang; Lan, Haiyu; Gu, Fuqiang; Yu, Fei; El-Sheimy, Naser

2017-01-01

In this research, a new Map/INS/Wi-Fi integrated system for indoor location-based service (LBS) applications based on a cascaded Particle/Kalman filter framework structure is proposed. Two-dimension indoor map information, together with measurements from an inertial measurement unit (IMU) and Received Signal Strength Indicator (RSSI) value, are integrated for estimating positioning information. The main challenge of this research is how to make effective use of various measurements that complement each other in order to obtain an accurate, continuous, and low-cost position solution without increasing the computational burden of the system. Therefore, to eliminate the cumulative drift caused by low-cost IMU sensor errors, the ubiquitous Wi-Fi signal and non-holonomic constraints are rationally used to correct the IMU-derived navigation solution through the extended Kalman Filter (EKF). Moreover, the map-aiding method and map-matching method are innovatively combined to constrain the primary Wi-Fi/IMU-derived position through an Auxiliary Value Particle Filter (AVPF). Different sources of information are incorporated through a cascaded structure EKF/AVPF filter algorithm. Indoor tests show that the proposed method can effectively reduce the accumulation of positioning errors of a stand-alone Inertial Navigation System (INS), and provide a stable, continuous and reliable indoor location service. PMID:28574471

A Map/INS/Wi-Fi Integrated System for Indoor Location-Based Service Applications.

PubMed

Yu, Chunyang; Lan, Haiyu; Gu, Fuqiang; Yu, Fei; El-Sheimy, Naser

2017-06-02

In this research, a new Map/INS/Wi-Fi integrated system for indoor location-based service (LBS) applications based on a cascaded Particle/Kalman filter framework structure is proposed. Two-dimension indoor map information, together with measurements from an inertial measurement unit (IMU) and Received Signal Strength Indicator (RSSI) value, are integrated for estimating positioning information. The main challenge of this research is how to make effective use of various measurements that complement each other in order to obtain an accurate, continuous, and low-cost position solution without increasing the computational burden of the system. Therefore, to eliminate the cumulative drift caused by low-cost IMU sensor errors, the ubiquitous Wi-Fi signal and non-holonomic constraints are rationally used to correct the IMU-derived navigation solution through the extended Kalman Filter (EKF). Moreover, the map-aiding method and map-matching method are innovatively combined to constrain the primary Wi-Fi/IMU-derived position through an Auxiliary Value Particle Filter (AVPF). Different sources of information are incorporated through a cascaded structure EKF/AVPF filter algorithm. Indoor tests show that the proposed method can effectively reduce the accumulation of positioning errors of a stand-alone Inertial Navigation System (INS), and provide a stable, continuous and reliable indoor location service.

The structure of pairwise correlation in mouse primary visual cortex reveals functional organization in the absence of an orientation map.

PubMed

Denman, Daniel J; Contreras, Diego

2014-10-01

Neural responses to sensory stimuli are not independent. Pairwise correlation can reduce coding efficiency, occur independent of stimulus representation, or serve as an additional channel of information, depending on the timescale of correlation and the method of decoding. Any role for correlation depends on its magnitude and structure. In sensory areas with maps, like the orientation map in primary visual cortex (V1), correlation is strongly related to the underlying functional architecture, but it is unclear whether this correlation structure is an essential feature of the system or arises from the arrangement of cells in the map. We assessed the relationship between functional architecture and pairwise correlation by measuring both synchrony and correlated spike count variability in mouse V1, which lacks an orientation map. We observed significant pairwise synchrony, which was organized by distance and relative orientation preference between cells. We also observed nonzero correlated variability in both the anesthetized (0.16) and awake states (0.18). Our results indicate that the structure of pairwise correlation is maintained in the absence of an underlying anatomical organization and may be an organizing principle of the mammalian visual system preserved by nonrandom connectivity within local networks. © The Author 2013. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Monitoring the bending and twist of morphing structures

NASA Astrophysics Data System (ADS)

Smoker, J.; Baz, A.

2008-03-01

This paper presents the development of the theoretical basis for the design of sensor networks for determining the 2-dimensioal shape of morphing structures by monitoring simultaneously the bending and twist deflections. The proposed development is based on the non-linear theory of finite elements to extract the transverse linear and angular deflections of a plate-like structure. The sensors outputs are wirelessly transmitted to the command unit to simultaneously compute maps of the linear and angular deflections and maps of the strain distribution of the entire structure. The deflection and shape information are required to ascertain that the structure is properly deployed and that its surfaces are operating wrinkle-free. The strain map ensures that the structure is not loaded excessively to adversely affect its service life. The developed theoretical model is validated experimentally using a prototype of a variable cambered span morphing structure provided with a network of distributed sensors. The structure/sensor network system is tested under various static conditions to determine the response characteristics of the proposed sensor network as compared to other conventional sensor systems. The presented theoretical and experimental techniques can have a great impact on the safe deployment and effective operation of a wide variety of morphing and inflatable structures such as morphing aircraft, solar sails, inflatable wings, and large antennas.

Mapping urban geology of the city of Girona, Catalonia

NASA Astrophysics Data System (ADS)

Vilà, Miquel; Torrades, Pau; Pi, Roser; Monleon, Ona

2016-04-01

A detailed and systematic geological characterization of the urban area of Girona has been conducted under the project '1:5000 scale Urban geological map of Catalonia' of the Catalan Geological Survey (Institut Cartogràfic i Geològic de Catalunya). The results of this characterization are organized into: i) a geological information system that includes all the information acquired; ii) a stratigraphic model focused on identification, characterization and correlation of the geological materials and structures present in the area and; iii) a detailed geological map that represents a synthesis of all the collected information. The mapping project integrates in a GIS environment pre-existing cartographic documentation (geological and topographical), core data from compiled boreholes, descriptions of geological outcrops within the urban network and neighbouring areas, physico-chemical characterisation of representative samples of geological materials, detailed geological mapping of Quaternary sediments, subsurface bedrock and artificial deposits and, 3D modelling of the main geological surfaces. The stratigraphic model is structured in a system of geological units that from a chronostratigrafic point of view are structured in Palaeozoic, Paleogene, Neogene, Quaternary and Anthropocene. The description of the geological units is guided by a systematic procedure. It includes the main lithological and structural features of the units that constitute the geological substratum and represents the conceptual base of the 1:5000 urban geological map of the Girona metropolitan area, which is organized into 6 map sheets. These map sheets are composed by a principal map, geological cross sections and, several complementary maps, charts and tables. Regardless of the geological map units, the principal map also represents the main artificial deposits, features related to geohistorical processes, contours of outcrop areas, information obtained in stations, borehole data, and contour lines of the top of the pre-Quaternary basement surface. The most representative complementary maps are the quaternary map, the subsurface bedrock map and the isopach map of thickness of superficial deposits (Quaternary and anthropogenic). The map sheets also include charts and tables of relevant physic-chemical parameters of the geological materials, harmonized downhole lithological columns from selected boreholes, stratigraphic columns, and, photographs and figures illustrating the geology of the mapped area and how urbanization has changed the natural environment. The development of systematic urban geological mapping projects, such as the example of Girona's case, which provides valuable resources to address targeted studies related to urban planning, geoengineering works, soil pollution and other important environmental issues that society should deal with in the future.

Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways

PubMed Central

Kawakami, Eiryo; Singh, Vivek K; Matsubara, Kazuko; Ishii, Takashi; Matsuoka, Yukiko; Hase, Takeshi; Kulkarni, Priya; Siddiqui, Kenaz; Kodilkar, Janhavi; Danve, Nitisha; Subramanian, Indhupriya; Katoh, Manami; Shimizu-Yoshida, Yuki; Ghosh, Samik; Jere, Abhay; Kitano, Hiroaki

2016-01-01

Cellular stress responses require exquisite coordination between intracellular signaling molecules to integrate multiple stimuli and actuate specific cellular behaviors. Deciphering the web of complex interactions underlying stress responses is a key challenge in understanding robust biological systems and has the potential to lead to the discovery of targeted therapeutics for diseases triggered by dysregulation of stress response pathways. We constructed large-scale molecular interaction maps of six major stress response pathways in Saccharomyces cerevisiae (baker’s or budding yeast). Biological findings from over 900 publications were converted into standardized graphical formats and integrated into a common framework. The maps are posted at http://www.yeast-maps.org/yeast-stress-response/ for browse and curation by the research community. On the basis of these maps, we undertook systematic analyses to unravel the underlying architecture of the networks. A series of network analyses revealed that yeast stress response pathways are organized in bow–tie structures, which have been proposed as universal sub-systems for robust biological regulation. Furthermore, we demonstrated a potential role for complexes in stabilizing the conserved core molecules of bow–tie structures. Specifically, complex-mediated reversible reactions, identified by network motif analyses, appeared to have an important role in buffering the concentration and activity of these core molecules. We propose complex-mediated reactions as a key mechanism mediating robust regulation of the yeast stress response. Thus, our comprehensive molecular interaction maps provide not only an integrated knowledge base, but also a platform for systematic network analyses to elucidate the underlying architecture in complex biological systems. PMID:28725465

Nasa's Planetary Geologic Mapping Program: Overview

NASA Astrophysics Data System (ADS)

Williams, D. A.

2016-06-01

NASA's Planetary Science Division supports the geologic mapping of planetary surfaces through a distinct organizational structure and a series of research and analysis (R&A) funding programs. Cartography and geologic mapping issues for NASA's planetary science programs are overseen by the Mapping and Planetary Spatial Infrastructure Team (MAPSIT), which is an assessment group for cartography similar to the Mars Exploration Program Assessment Group (MEPAG) for Mars exploration. MAPSIT's Steering Committee includes specialists in geological mapping, who make up the Geologic Mapping Subcommittee (GEMS). I am the GEMS Chair, and with a group of 3-4 community mappers we advise the U.S. Geological Survey Planetary Geologic Mapping Coordinator (Dr. James Skinner) and develop policy and procedures to aid the planetary geologic mapping community. GEMS meets twice a year, at the Annual Lunar and Planetary Science Conference in March, and at the Annual Planetary Mappers' Meeting in June (attendance is required by all NASA-funded geologic mappers). Funding programs under NASA's current R&A structure to propose geological mapping projects include Mars Data Analysis (Mars), Lunar Data Analysis (Moon), Discovery Data Analysis (Mercury, Vesta, Ceres), Cassini Data Analysis (Saturn moons), Solar System Workings (Venus or Jupiter moons), and the Planetary Data Archiving, Restoration, and Tools (PDART) program. Current NASA policy requires all funded geologic mapping projects to be done digitally using Geographic Information Systems (GIS) software. In this presentation we will discuss details on how geologic mapping is done consistent with current NASA policy and USGS guidelines.

A Tangible Approach to Concept Mapping

NASA Astrophysics Data System (ADS)

Tanenbaum, Karen; Antle, Alissa N.

2009-05-01

The Tangible Concept Mapping project investigates using a tangible user interface to engage learners in concept map creation. This paper describes a prototype implementation of the system, presents some preliminary analysis of its ease of use and effectiveness, and discusses how elements of tangible interaction support concept mapping by helping users organize and structure their knowledge about a domain. The role of physical engagement and embodiment in supporting the mental activity of creating the concept map is explored as one of the benefits of a tangible approach to learning.

Study on Mobile Object Positioning and Alarming System Based on the “Map World” in the Core Area of the Silk Road Economic Belt

NASA Astrophysics Data System (ADS)

Mu, Kai

2017-02-01

The established “Map World” on the National Geographic Information Public Service Platform offers free access to many geographic information in the Core Area of the Silk Road Economic Belt. Considering the special security situation and severe splittism and anti-splittism struggles in the Core Area of the Silk Road Economic Belt, a set of moving target positioning and alarming platform based on J2EE platform and B/S structure was designed and realized by combining the “Map World” data and global navigation satellite system. This platform solves various problems, such as effective combination of Global Navigation Satellite System (GNSS) and “Map World” resources, moving target alarming setting, inquiry of historical routes, system management, etc.

Continuous Mapping of Tunnel Walls in a Gnss-Denied Environment

NASA Astrophysics Data System (ADS)

Chapman, Michael A.; Min, Cao; Zhang, Deijin

2016-06-01

The need for reliable systems for capturing precise detail in tunnels has increased as the number of tunnels (e.g., for cars and trucks, trains, subways, mining and other infrastructure) has increased and the age of these structures and, subsequent, deterioration has introduced structural degradations and eventual failures. Due to the hostile environments encountered in tunnels, mobile mapping systems are plagued with various problems such as loss of GNSS signals, drift of inertial measurements systems, low lighting conditions, dust and poor surface textures for feature identification and extraction. A tunnel mapping system using alternate sensors and algorithms that can deliver precise coordinates and feature attributes from surfaces along the entire tunnel path is presented. This system employs image bridging or visual odometry to estimate precise sensor positions and orientations. The fundamental concept is the use of image sequences to geometrically extend the control information in the absence of absolute positioning data sources. This is a non-trivial problem due to changes in scale, perceived resolution, image contrast and lack of salient features. The sensors employed include forward-looking high resolution digital frame cameras coupled with auxiliary light sources. In addition, a high frequency lidar system and a thermal imager are included to offer three dimensional point clouds of the tunnel walls along with thermal images for moisture detection. The mobile mapping system is equipped with an array of 16 cameras and light sources to capture the tunnel walls. Continuous images are produced using a semi-automated mosaicking process. Results of preliminary experimentation are presented to demonstrate the effectiveness of the system for the generation of seamless precise tunnel maps.

Ultra-Structure database design methodology for managing systems biology data and analyses

PubMed Central

Maier, Christopher W; Long, Jeffrey G; Hemminger, Bradley M; Giddings, Morgan C

2009-01-01

Background Modern, high-throughput biological experiments generate copious, heterogeneous, interconnected data sets. Research is dynamic, with frequently changing protocols, techniques, instruments, and file formats. Because of these factors, systems designed to manage and integrate modern biological data sets often end up as large, unwieldy databases that become difficult to maintain or evolve. The novel rule-based approach of the Ultra-Structure design methodology presents a potential solution to this problem. By representing both data and processes as formal rules within a database, an Ultra-Structure system constitutes a flexible framework that enables users to explicitly store domain knowledge in both a machine- and human-readable form. End users themselves can change the system's capabilities without programmer intervention, simply by altering database contents; no computer code or schemas need be modified. This provides flexibility in adapting to change, and allows integration of disparate, heterogenous data sets within a small core set of database tables, facilitating joint analysis and visualization without becoming unwieldy. Here, we examine the application of Ultra-Structure to our ongoing research program for the integration of large proteomic and genomic data sets (proteogenomic mapping). Results We transitioned our proteogenomic mapping information system from a traditional entity-relationship design to one based on Ultra-Structure. Our system integrates tandem mass spectrum data, genomic annotation sets, and spectrum/peptide mappings, all within a small, general framework implemented within a standard relational database system. General software procedures driven by user-modifiable rules can perform tasks such as logical deduction and location-based computations. The system is not tied specifically to proteogenomic research, but is rather designed to accommodate virtually any kind of biological research. Conclusion We find Ultra-Structure offers substantial benefits for biological information systems, the largest being the integration of diverse information sources into a common framework. This facilitates systems biology research by integrating data from disparate high-throughput techniques. It also enables us to readily incorporate new data types, sources, and domain knowledge with no change to the database structure or associated computer code. Ultra-Structure may be a significant step towards solving the hard problem of data management and integration in the systems biology era. PMID:19691849

Accurate Mobile Urban Mapping via Digital Map-Based SLAM †

PubMed Central

Roh, Hyunchul; Jeong, Jinyong; Cho, Younggun; Kim, Ayoung

2016-01-01

This paper presents accurate urban map generation using digital map-based Simultaneous Localization and Mapping (SLAM). Throughout this work, our main objective is generating a 3D and lane map aiming for sub-meter accuracy. In conventional mapping approaches, achieving extremely high accuracy was performed by either (i) exploiting costly airborne sensors or (ii) surveying with a static mapping system in a stationary platform. Mobile scanning systems recently have gathered popularity but are mostly limited by the availability of the Global Positioning System (GPS). We focus on the fact that the availability of GPS and urban structures are both sporadic but complementary. By modeling both GPS and digital map data as measurements and integrating them with other sensor measurements, we leverage SLAM for an accurate mobile mapping system. Our proposed algorithm generates an efficient graph SLAM and achieves a framework running in real-time and targeting sub-meter accuracy with a mobile platform. Integrated with the SLAM framework, we implement a motion-adaptive model for the Inverse Perspective Mapping (IPM). Using motion estimation derived from SLAM, the experimental results show that the proposed approaches provide stable bird’s-eye view images, even with significant motion during the drive. Our real-time map generation framework is validated via a long-distance urban test and evaluated at randomly sampled points using Real-Time Kinematic (RTK)-GPS. PMID:27548175

Geologic Map and Map Database of Eastern Sonoma and Western Napa Counties, California

USGS Publications Warehouse

Graymer, R.W.; Brabb, E.E.; Jones, D.L.; Barnes, J.; Nicholson, R.S.; Stamski, R.E.

2007-01-01

Introduction This report contains a new 1:100,000-scale geologic map, derived from a set of geologic map databases (Arc-Info coverages) containing information at 1:62,500-scale resolution, and a new description of the geologic map units and structural relations in the map area. Prepared as part of the San Francisco Bay Region Mapping Project, the study area includes the north-central part of the San Francisco Bay region, and forms the final piece of the effort to generate new, digital geologic maps and map databases for an area which includes Alameda, Contra Costa, Marin, Napa, San Francisco, San Mateo, Santa Clara, Santa Cruz, Solano, and Sonoma Counties. Geologic mapping in Lake County in the north-central part of the map extent was not within the scope of the Project. The map and map database integrates both previously published reports and new geologic mapping and field checking by the authors (see Sources of Data index map on the map sheet or the Arc-Info coverage eswn-so and the textfile eswn-so.txt). This report contains new ideas about the geologic structures in the map area, including the active San Andreas Fault system, as well as the geologic units and their relations. Together, the map (or map database) and the unit descriptions in this report describe the composition, distribution, and orientation of geologic materials and structures within the study area at regional scale. Regional geologic information is important for analysis of earthquake shaking, liquifaction susceptibility, landslide susceptibility, engineering materials properties, mineral resources and hazards, as well as groundwater resources and hazards. These data also assist in answering questions about the geologic history and development of the California Coast Ranges.

Nonlocal response with local optics

NASA Astrophysics Data System (ADS)

Kong, Jiantao; Shvonski, Alexander J.; Kempa, Krzysztof

2018-04-01

For plasmonic systems too small for classical, local simulations to be valid, but too large for ab initio calculations to be computationally feasible, we developed a practical approach—a nonlocal-to-local mapping that enables the use of a modified local system to obtain the response due to nonlocal effects to lowest order, at the cost of higher structural complexity. In this approach, the nonlocal surface region of a metallic structure is mapped onto a local dielectric film, mathematically preserving the nonlocality of the entire system. The most significant feature of this approach is its full compatibility with conventional, highly efficient finite difference time domain (FDTD) simulation codes. Our optimized choice of mapping is based on the Feibelman's d -function formalism, and it produces an effective dielectric function of the local film that obeys all required sum rules, as well as the Kramers-Kronig causality relations. We demonstrate the power of our approach combined with an FDTD scheme, in a series of comparisons with experiments and ab initio density functional theory calculations from the literature, for structures with dimensions from the subnanoscopic to microscopic range.

System and technique for retrieving depth information about a surface by projecting a composite image of modulated light patterns

NASA Technical Reports Server (NTRS)

Hassebrook, Laurence G. (Inventor); Lau, Daniel L. (Inventor); Guan, Chun (Inventor)

2010-01-01

A technique, associated system and program code, for retrieving depth information about at least one surface of an object, such as an anatomical feature. Core features include: projecting a composite image comprising a plurality of modulated structured light patterns, at the anatomical feature; capturing an image reflected from the surface; and recovering pattern information from the reflected image, for each of the modulated structured light patterns. Pattern information is preferably recovered for each modulated structured light pattern used to create the composite, by performing a demodulation of the reflected image. Reconstruction of the surface can be accomplished by using depth information from the recovered patterns to produce a depth map/mapping thereof. Each signal waveform used for the modulation of a respective structured light pattern, is distinct from each of the other signal waveforms used for the modulation of other structured light patterns of a composite image; these signal waveforms may be selected from suitable types in any combination of distinct signal waveforms, provided the waveforms used are uncorrelated with respect to each other. The depth map/mapping to be utilized in a host of applications, for example: displaying a 3-D view of the object; virtual reality user-interaction interface with a computerized device; face--or other animal feature or inanimate object--recognition and comparison techniques for security or identification purposes; and 3-D video teleconferencing/telecollaboration.

System and technique for retrieving depth information about a surface by projecting a composite image of modulated light patterns

NASA Technical Reports Server (NTRS)

Guan, Chun (Inventor); Hassebrook, Laurence G. (Inventor); Lau, Daniel L. (Inventor)

2008-01-01

A technique, associated system and program code, for retrieving depth information about at least one surface of an object. Core features include: projecting a composite image comprising a plurality of modulated structured light patterns, at the object; capturing an image reflected from the surface; and recovering pattern information from the reflected image, for each of the modulated structured light patterns. Pattern information is preferably recovered for each modulated structured light pattern used to create the composite, by performing a demodulation of the reflected image. Reconstruction of the surface can be accomplished by using depth information from the recovered patterns to produce a depth map/mapping thereof. Each signal waveform used for the modulation of a respective structured light pattern, is distinct from each of the other signal waveforms used for the modulation of other structured light patterns of a composite image; these signal waveforms may be selected from suitable types in any combination of distinct signal waveforms, provided the waveforms used are uncorrelated with respect to each other. The depth map/mapping to be utilized in a host of applications, for example: displaying a 3-D view of the object; virtual reality user-interaction interface with a computerized device; face--or other animal feature or inanimate object--recognition and comparison techniques for security or identification purposes; and 3-D video teleconferencing/telecollaboration.

The Voronoi spatio-temporal data structure

NASA Astrophysics Data System (ADS)

Mioc, Darka

2002-04-01

Current GIS models cannot integrate the temporal dimension of spatial data easily. Indeed, current GISs do not support incremental (local) addition and deletion of spatial objects, and they can not support the temporal evolution of spatial data. Spatio-temporal facilities would be very useful in many GIS applications: harvesting and forest planning, cadastre, urban and regional planning, and emergency planning. The spatio-temporal model that can overcome these problems is based on a topological model---the Voronoi data structure. Voronoi diagrams are irregular tessellations of space, that adapt to spatial objects and therefore they are a synthesis of raster and vector spatial data models. The main advantage of the Voronoi data structure is its local and sequential map updates, which allows us to automatically record each event and performed map updates within the system. These map updates are executed through map construction commands that are composed of atomic actions (geometric algorithms for addition, deletion, and motion of spatial objects) on the dynamic Voronoi data structure. The formalization of map commands led to the development of a spatial language comprising a set of atomic operations or constructs on spatial primitives (points and lines), powerful enough to define the complex operations. This resulted in a new formal model for spatio-temporal change representation, where each update is uniquely characterized by the numbers of newly created and inactivated Voronoi regions. This is used for the extension of the model towards the hierarchical Voronoi data structure. In this model, spatio-temporal changes induced by map updates are preserved in a hierarchical data structure that combines events and corresponding changes in topology. This hierarchical Voronoi data structure has an implicit time ordering of events visible through changes in topology, and it is equivalent to an event structure that can support temporal data without precise temporal information. This formal model of spatio-temporal change representation is currently applied to retroactive map updates and visualization of map evolution. It offers new possibilities in the domains of temporal GIS, transaction processing, spatio-temporal queries, spatio-temporal analysis, map animation and map visualization.

Weak form of Stokes-Dirac structures and geometric discretization of port-Hamiltonian systems

NASA Astrophysics Data System (ADS)

Kotyczka, Paul; Maschke, Bernhard; Lefèvre, Laurent

2018-05-01

We present the mixed Galerkin discretization of distributed parameter port-Hamiltonian systems. On the prototypical example of hyperbolic systems of two conservation laws in arbitrary spatial dimension, we derive the main contributions: (i) A weak formulation of the underlying geometric (Stokes-Dirac) structure with a segmented boundary according to the causality of the boundary ports. (ii) The geometric approximation of the Stokes-Dirac structure by a finite-dimensional Dirac structure is realized using a mixed Galerkin approach and power-preserving linear maps, which define minimal discrete power variables. (iii) With a consistent approximation of the Hamiltonian, we obtain finite-dimensional port-Hamiltonian state space models. By the degrees of freedom in the power-preserving maps, the resulting family of structure-preserving schemes allows for trade-offs between centered approximations and upwinding. We illustrate the method on the example of Whitney finite elements on a 2D simplicial triangulation and compare the eigenvalue approximation in 1D with a related approach.

Participatory Development and Analysis of a Fuzzy Cognitive Map of the Establishment of a Bio-Based Economy in the Humber Region

PubMed Central

Penn, Alexandra S.; Knight, Christopher J. K.; Lloyd, David J. B.; Avitabile, Daniele; Kok, Kasper; Schiller, Frank; Woodward, Amy; Druckman, Angela; Basson, Lauren

2013-01-01

Fuzzy Cognitive Mapping (FCM) is a widely used participatory modelling methodology in which stakeholders collaboratively develop a ‘cognitive map’ (a weighted, directed graph), representing the perceived causal structure of their system. This can be directly transformed by a workshop facilitator into simple mathematical models to be interrogated by participants by the end of the session. Such simple models provide thinking tools which can be used for discussion and exploration of complex issues, as well as sense checking the implications of suggested causal links. They increase stakeholder motivation and understanding of whole systems approaches, but cannot be separated from an intersubjective participatory context. Standard FCM methodologies make simplifying assumptions, which may strongly influence results, presenting particular challenges and opportunities. We report on a participatory process, involving local companies and organisations, focussing on the development of a bio-based economy in the Humber region. The initial cognitive map generated consisted of factors considered key for the development of the regional bio-based economy and their directional, weighted, causal interconnections. A verification and scenario generation procedure, to check the structure of the map and suggest modifications, was carried out with a second session. Participants agreed on updates to the original map and described two alternate potential causal structures. In a novel analysis all map structures were tested using two standard methodologies usually used independently: linear and sigmoidal FCMs, demonstrating some significantly different results alongside some broad similarities. We suggest a development of FCM methodology involving a sensitivity analysis with different mappings and discuss the use of this technique in the context of our case study. Using the results and analysis of our process, we discuss the limitations and benefits of the FCM methodology in this case and in general. We conclude by proposing an extended FCM methodology, including multiple functional mappings within one participant-constructed graph. PMID:24244303

Digital data sets for map products produced as part of the Black Hills Hydrology Study, western South Dakota

USGS Publications Warehouse

Williamson, Joyce E.; Jarrell, Gregory J.; Clawges, Rick M.; Galloway, Joel M.; Carter, Janet M.

2000-01-01

This compact disk contains digital data produced as part of the 1:100,000-scale map products for the Black Hills Hydrology Study conducted in western South Dakota. The digital data include 28 individual Geographic Information System (GIS) data sets: data sets for the hydrogeologic unit map including all mapped hydrogeologic units within the study area (1 data set) and major geologic structure including anticlines and synclines (1 data set); data sets for potentiometric maps including the potentiometric contours for the Inyan Kara, Minnekahta, Minnelusa, Madison, and Deadwood aquifers (5 data sets), wells used as control points for each aquifer (5 data sets), and springs used as control points for the potentiometric contours (1 data set); and data sets for the structure-contour maps including the structure contours for the top of each formation that contains major aquifers (5 data sets), wells and tests holes used as control points for each formation (5 data sets), and surficial deposits (alluvium and terrace deposits) that directly overlie each of the major aquifer outcrops (5 data sets). These data sets were used to produce the maps published by the U.S. Geological Survey.

Islands of biogeodiversity in arid lands on a polygons map study: Detecting scale invariance patterns from natural resources maps.

PubMed

Ibáñez, J J; Pérez-Gómez, R; Brevik, Eric C; Cerdà, A

2016-12-15

Many maps (geology, hydrology, soil, vegetation, etc.) are created to inventory natural resources. Each of these resources is mapped using a unique set of criteria, including scales and taxonomies. Past research indicates that comparing results of related maps (e.g., soil and geology maps) may aid in identifying mapping deficiencies. Therefore, this study was undertaken in Almeria Province, Spain to (i) compare the underlying map structures of soil and vegetation maps and (ii) investigate if a vegetation map can provide useful soil information that was not shown on a soil map. Soil and vegetation maps were imported into ArcGIS 10.1 for spatial analysis, and results then exported to Microsoft Excel worksheets for statistical analyses to evaluate fits to linear and power law regression models. Vegetative units were grouped according to the driving forces that determined their presence or absence: (i) climatophilous (ii) lithologic-climate; and (iii) edaphophylous. The rank abundance plots for both the soil and vegetation maps conformed to Willis or Hollow Curves, meaning the underlying structures of both maps were the same. Edaphophylous map units, which represent 58.5% of the vegetation units in the study area, did not show a good correlation with the soil map. Further investigation revealed that 87% of the edaphohygrophilous units were found in ramblas, ephemeral riverbeds that are not typically classified and mapped as soils in modern systems, even though they meet the definition of soil given by the most commonly used and most modern soil taxonomic systems. Furthermore, these edaphophylous map units tend to be islands of biodiversity that are threatened by anthropogenic activity in the region. Therefore, this study revealed areas that need to be revisited and studied pedologically. The vegetation mapped in these areas and the soils that support it are key components of the earth's critical zone that must be studied, understood, and preserved. Copyright © 2016 Elsevier B.V. All rights reserved.

Accurate high-throughput structure mapping and prediction with transition metal ion FRET

PubMed Central

Yu, Xiaozhen; Wu, Xiongwu; Bermejo, Guillermo A.; Brooks, Bernard R.; Taraska, Justin W.

2013-01-01

Mapping the landscape of a protein’s conformational space is essential to understanding its functions and regulation. The limitations of many structural methods have made this process challenging for most proteins. Here, we report that transition metal ion FRET (tmFRET) can be used in a rapid, highly parallel screen, to determine distances from multiple locations within a protein at extremely low concentrations. The distances generated through this screen for the protein Maltose Binding Protein (MBP) match distances from the crystal structure to within a few angstroms. Furthermore, energy transfer accurately detects structural changes during ligand binding. Finally, fluorescence-derived distances can be used to guide molecular simulations to find low energy states. Our results open the door to rapid, accurate mapping and prediction of protein structures at low concentrations, in large complex systems, and in living cells. PMID:23273426

A comprehensive pathway map of epidermal growth factor receptor signaling

PubMed Central

Oda, Kanae; Matsuoka, Yukiko; Funahashi, Akira; Kitano, Hiroaki

2005-01-01

The epidermal growth factor receptor (EGFR) signaling pathway is one of the most important pathways that regulate growth, survival, proliferation, and differentiation in mammalian cells. Reflecting this importance, it is one of the best-investigated signaling systems, both experimentally and computationally, and several computational models have been developed for dynamic analysis. A map of molecular interactions of the EGFR signaling system is a valuable resource for research in this area. In this paper, we present a comprehensive pathway map of EGFR signaling and other related pathways. The map reveals that the overall architecture of the pathway is a bow-tie (or hourglass) structure with several feedback loops. The map is created using CellDesigner software that enables us to graphically represent interactions using a well-defined and consistent graphical notation, and to store it in Systems Biology Markup Language (SBML). PMID:16729045

Human impacts on fluvial systems - A small-catchment case study

NASA Astrophysics Data System (ADS)

Pöppl, Ronald E.; Glade, Thomas; Keiler, Margreth

2010-05-01

Regulations of nearly two-thirds of the rivers worldwide have considerable influences on fluvial systems. In Austria, nearly any river (or) catchment is affected by humans, e.g. due to changing land-use conditions and river engineering structures. Recent studies of human impacts on rivers show that morphologic channel changes play a major role regarding channelization and leveeing, land-use conversions, dams, mining, urbanization and alterations of natural habitats (ecomorphology). Thus 'natural (fluvial) systems' are scarce and humans are almost always inseparably interwoven with them playing a major role in altering them coincidentally. The main objective of this study is to identify human effects (i.e. different land use conditions and river engineering structures) on river bed sediment composition and to delineate its possible implications for limnic habitats. The study area watersheds of the 'Fugnitz' River (~ 140km²) and the 'Kaja' River (~ 20km²) are located in the Eastern part of the Bohemian Massif in Austria (Europe) and drain into the 'Thaya' River which is the border river to the Czech Republic in the north of Lower Austria. Furthermore the 'Thaya' River is eponymous for the local National Park 'Nationalpark Thayatal'. In order to survey river bed sediment composition and river engineering structures facies mapping techniques, i.e. river bed surface mapping and ecomorphological mapping have been applied. Additionally aerial photograph and airborne laserscan interpretation has been used to create land use maps. These maps have been integrated to a numerical DEM-based spatial model in order to get an impression of the variability of sediment input rates to the river system. It is hypothesized that this variability is primarily caused by different land use conditions. Finally river bed sites affected by river engineering structures have been probed and grain size distributions have been analyzed. With these data sedimentological and ecological/ecomorphological effects of various river engineering structures (i.e. dams, weirs, river bank- and river bed protection works) on river bed sediment composition and on limnic habitats are evaluated. First results reveal that 'land use' is a dominant factor concerning river bed sediment composition and limnic habitat conditions. Further outcomes will be presented on European Geosciences Union General Assembly, 2010.

Optomechanical stability design of space optical mapping camera

NASA Astrophysics Data System (ADS)

Li, Fuqiang; Cai, Weijun; Zhang, Fengqin; Li, Na; Fan, Junjie

2018-01-01

According to the interior orientation elements and imaging quality requirements of mapping application to mapping camera and combined with off-axis three-mirror anastigmat(TMA) system, high optomechanical stability design of a space optical mapping camera is introduced in this paper. The configuration is a coaxial TMA system used in off-axis situation. Firstly, the overall optical arrangement is described., and an overview of the optomechanical packaging is provided. Zerodurglass, carbon fiber composite and carbon-fiber reinforced silicon carbon (C/SiC) are widely used in the optomechanical structure, because their low coefficient of thermal expansion (CTE) can reduce the thermal sensitivity of the mirrors and focal plane. Flexible and unloading support are used in reflector and camera supporting structure. Epoxy structural adhesives is used for bonding optics to metal structure is also introduced in this paper. The primary mirror is mounted by means of three-point ball joint flexures system, which is attach to the back of the mirror. Then, In order to predict flexural displacements due to gravity, static finite element analysis (FEA) is performed on the primary mirror. The optical performance peak-to-valley (PV) and root-mean-square (RMS) wavefront errors are detected before and after assemble. Also, the dynamic finite element analysis(FEA) of the whole optical arrangement is carried out as to investigate the performance of optomechanical. Finally, in order to evaluate the stability of the design, the thermal vacuum test and vibration test are carried out and the Modulation Transfer Function (MTF) and elements of interior orientation are presented as the evaluation index. Before and after the thermal vacuum test and vibration test, the MTF, focal distance and position of the principal point of optical system are measured and the result is as expected.

Sand fairway mapping as a tool for tectonic restoration in orogenic belts

NASA Astrophysics Data System (ADS)

Butler, Rob

2016-04-01

The interplay between regional subsidence mechanisms and local deformation associated with individual fold-thrust structures is commonly investigated in neotectonic subaerial systems using tectonic geomorphology. Taking these approaches back into the early evolution of mountain belts is difficult as much of the key evidence is lost through erosion. The challenge is to develop appropriate tools for investigating these early stages of orogenesis. However, many such systems developed under water. In these settings the connections between regional and local tectonics are manifest in complex bathymetry. Turbidity currents flowing between and across these structures will interact with their substrate and thus their deposits, tied to stratigraphic ages, can chart tectonic evolution. Understanding the depositional processes of the turbidity currents provides substantial further insight on confining seabed geometry and thus can establish significant control on the evolution of bathymetric gradients and continuity through basins. However, reading these records commonly demands working in structurally deformed terrains that hitherto have discouraged sedimentological study. This is now changing. Sand fairway mapping provides a key approach. Fairway maps chart connectivity between basins and hence their relative elevation through time. Larger-scale tectonic reconstructions may be tested by linking fairway maps to sand composition and other provenance data. More detailed turbidite sedimentology provides substantial further insight. In confined turbidite systems, it is the coarser sand component that accumulates in the deeper basin with fines fractionated onto the flanks. Flow bypass, evidenced by abrupt breaks in grading within individual event beds, can be used to predict sand fraction distribution down fairways. Integrating sedimentology into fairway maps can chart syntectonic slope evolution and thus provide high resolution tools equivalent to those in subaerial tectonic geomorphology. The stratigraphic records are preserved in many parts of the Alpine-Mediterranean region. Examples are drawn from the Eo-Oligocene of the western Alps and the early Miocene of the Maghreb-Apennine system to illustrate how turbidite sedimentology, linked to studies of basin structure, can inform understanding of tectonic processes on regional and local scales. In both examples, sediment was delivered across deforming basin arrays containing contractional structures, sourced from beyond the immediate orogenic segments. The depositional systems show that multiple structures were active in parallel, rather than develop in any particular sequence. Both systems show that significant deformation occurs, emerging to the syn-orogenic surface ahead of the main orogenic wedge. The cycling of uplift and subsidence of "massifs" can be significantly more complex that the histories resolved from thermochronological data alone.

Geologic map of the Nepenthes Planum Region, Mars

USGS Publications Warehouse

Skinner, James A.; Tanaka, Kenneth L.

2018-03-26

This map product contains a map sheet at 1:1,506,000 scale that shows the geology of the Nepenthes Planum region of Mars, which is located between the cratered highlands that dominate the southern hemisphere and the less-cratered sedimentary plains that dominate the northern hemisphere.  The map region contains cone- and mound-shaped landforms as well as lobate materials that are morphologically similar to terrestrial igneous or mud vents and flows. This map is part of an informal series of small-scale (large-area) maps aimed at refining current understanding of the geologic units and structures that make up the highland-to-lowland transition zone. The map base consists of a controlled Thermal Emission Imaging System (THEMIS) daytime infrared image mosaic (100 meters per pixel resolution) supplemented by a Mars Orbiter Laser Altimeter (MOLA) digital elevation model (463 meters per pixel resolution). The map includes a Description of Map Units and a Correlation of Map Units that describes and correlates units identified across the entire map region. The geologic map was assembled using ArcGIS software by Environmental Systems Research Institute (http://www.esri.com). The ArcGIS project, geodatabase, base map, and all map components are included online as supplemental data.

Gravity Maps of Antarctic Lithospheric Structure from Remote-Sensing and Seismic Data

NASA Astrophysics Data System (ADS)

Tenzer, Robert; Chen, Wenjin; Baranov, Alexey; Bagherbandi, Mohammad

2018-02-01

Remote-sensing data from altimetry and gravity satellite missions combined with seismic information have been used to investigate the Earth's interior, particularly focusing on the lithospheric structure. In this study, we use the subglacial bedrock relief BEDMAP2, the global gravitational model GOCO05S, and the ETOPO1 topographic/bathymetric data, together with a newly developed (continental-scale) seismic crustal model for Antarctica to compile the free-air, Bouguer, and mantle gravity maps over this continent and surrounding oceanic areas. We then use these gravity maps to interpret the Antarctic crustal and uppermost mantle structure. We demonstrate that most of the gravity features seen in gravity maps could be explained by known lithospheric structures. The Bouguer gravity map reveals a contrast between the oceanic and continental crust which marks the extension of the Antarctic continental margins. The isostatic signature in this gravity map confirms deep and compact orogenic roots under the Gamburtsev Subglacial Mountains and more complex orogenic structures under Dronning Maud Land in East Antarctica. Whereas the Bouguer gravity map exhibits features which are closely spatially correlated with the crustal thickness, the mantle gravity map reveals mainly the gravitational signature of the uppermost mantle, which is superposed over a weaker (long-wavelength) signature of density heterogeneities distributed deeper in the mantle. In contrast to a relatively complex and segmented uppermost mantle structure of West Antarctica, the mantle gravity map confirmed a more uniform structure of the East Antarctic Craton. The most pronounced features in this gravity map are divergent tectonic margins along mid-oceanic ridges and continental rifts. Gravity lows at these locations indicate that a broad region of the West Antarctic Rift System continuously extends between the Atlantic-Indian and Pacific-Antarctic mid-oceanic ridges and it is possibly formed by two major fault segments. Gravity lows over the Transantarctic Mountains confirms their non-collisional origin. Additionally, more localized gravity lows closely coincide with known locations of hotspots and volcanic regions (Marie Byrd Land, Balleny Islands, Mt. Erebus). Gravity lows also suggest a possible hotspot under the South Orkney Islands. However, this finding has to be further verified.

Geologic Mapping of Vesta

NASA Technical Reports Server (NTRS)

Yingst, R. A.; Mest, S. C.; Berman, D. C.; Garry, W. B.; Williams, D. A.; Buczkowski, D.; Jaumann, R.; Pieters, C. M.; De Sanctis, M. C.; Frigeri, A.;

Mapping Joint Action.

ERIC Educational Resources Information Center

Slawski, Carl

The flow diagrams in this document provide cognitive maps to aid in synthesizing diverse areas of knowledge in a special brand of field theory. A model is presented which highlights the domains of structural functionalism (with concepts of cultural, personal and societal systems) and symbolic interactionism (with the concepts of self, sentiments…

Single-molecule optical genome mapping of a human HapMap and a colorectal cancer cell line.

PubMed

Teo, Audrey S M; Verzotto, Davide; Yao, Fei; Nagarajan, Niranjan; Hillmer, Axel M

2015-01-01

Next-generation sequencing (NGS) technologies have changed our understanding of the variability of the human genome. However, the identification of genome structural variations based on NGS approaches with read lengths of 35-300 bases remains a challenge. Single-molecule optical mapping technologies allow the analysis of DNA molecules of up to 2 Mb and as such are suitable for the identification of large-scale genome structural variations, and for de novo genome assemblies when combined with short-read NGS data. Here we present optical mapping data for two human genomes: the HapMap cell line GM12878 and the colorectal cancer cell line HCT116. High molecular weight DNA was obtained by embedding GM12878 and HCT116 cells, respectively, in agarose plugs, followed by DNA extraction under mild conditions. Genomic DNA was digested with KpnI and 310,000 and 296,000 DNA molecules (≥ 150 kb and 10 restriction fragments), respectively, were analyzed per cell line using the Argus optical mapping system. Maps were aligned to the human reference by OPTIMA, a new glocal alignment method. Genome coverage of 6.8× and 5.7× was obtained, respectively; 2.9× and 1.7× more than the coverage obtained with previously available software. Optical mapping allows the resolution of large-scale structural variations of the genome, and the scaffold extension of NGS-based de novo assemblies. OPTIMA is an efficient new alignment method; our optical mapping data provide a resource for genome structure analyses of the human HapMap reference cell line GM12878, and the colorectal cancer cell line HCT116.

Characterizing semantic mappings adaptation via biomedical KOS evolution: a case study investigating SNOMED CT and ICD.

PubMed

Dos Reis, Julio Cesar; Pruski, Cédric; Da Silveira, Marcos; Reynaud-Delaître, Chantal

2013-01-01

Mappings established between Knowledge Organization Systems (KOS) increase semantic interoperability between biomedical information systems. However, biomedical knowledge is highly dynamic and changes affecting KOS entities can potentially invalidate part or the totality of existing mappings. Understanding how mappings evolve and what the impacts of KOS evolution on mappings are is therefore crucial for the definition of an automatic approach to maintain mappings valid and up-to-date over time. In this article, we study variations of a specific KOS complex change (split) for two biomedical KOS (SNOMED CT and ICD-9-CM) through a rigorous method of investigation for identifying and refining complex changes, and for selecting representative cases. We empirically analyze and explain their influence on the evolution of associated mappings. Results point out the importance of considering various dimensions of the information described in KOS, like the semantic structure of concepts, the set of relevant information used to define the mappings and the change operations interfering with this set of information.

Characterizing Semantic Mappings Adaptation via Biomedical KOS Evolution: A Case Study Investigating SNOMED CT and ICD

PubMed Central

Reis, Julio Cesar Dos; Pruski, Cédric; Da Silveira, Marcos; Reynaud-Delaître, Chantal

2013-01-01

Mappings established between Knowledge Organization Systems (KOS) increase semantic interoperability between biomedical information systems. However, biomedical knowledge is highly dynamic and changes affecting KOS entities can potentially invalidate part or the totality of existing mappings. Understanding how mappings evolve and what the impacts of KOS evolution on mappings are is therefore crucial for the definition of an automatic approach to maintain mappings valid and up-to-date over time. In this article, we study variations of a specific KOS complex change (split) for two biomedical KOS (SNOMED CT and ICD-9-CM) through a rigorous method of investigation for identifying and refining complex changes, and for selecting representative cases. We empirically analyze and explain their influence on the evolution of associated mappings. Results point out the importance of considering various dimensions of the information described in KOS, like the semantic structure of concepts, the set of relevant information used to define the mappings and the change operations interfering with this set of information. PMID:24551341

An automated miniature robotic vehicle inspection system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dobie, Gordon; Summan, Rahul; MacLeod, Charles

2014-02-18

A novel, autonomous reconfigurable robotic inspection system for quantitative NDE mapping is presented. The system consists of a fleet of wireless (802.11g) miniature robotic vehicles, each approximately 175 × 125 × 85 mm with magnetic wheels that enable them to inspect industrial structures such as storage tanks, chimneys and large diameter pipe work. The robots carry one of a number of payloads including a two channel MFL sensor, a 5 MHz dry coupled UT thickness wheel probe and a machine vision camera that images the surface. The system creates an NDE map of the structure overlaying results onto a 3Dmore » model in real time. The authors provide an overview of the robot design, data fusion algorithms (positioning and NDE) and visualization software.« less

Mapping Vegetation Structure in Kakadu National Park: An AIRSAR and GIS Application in Conservation

NASA Technical Reports Server (NTRS)

Imhoff, Marc L.; Sisk, Thomas D.; Hampton, Haydee; Milne, Anthony K.

1999-01-01

Airborne Synthetic Aperture Radar (AIRSAR) data were used to map vegetation structure in Kakadu National Park Australia as part of the PACRIM project. SAR data were co-registered with Landsat TM, aerial photos, and map data in a geographic information system for a small test area consisting of mangrove, floodplain grasslands, lowland tropical evergreen forest and upland mixed deciduous and evergreen tropical forest near the South Alligator River. Landsat (Thematic Mapper) TM very clearly showed the floristic composition and burn scars from the previous years fires and the AIRSAR data provided a profile of vegetation structure. Extensive field data on vegetation species composition and structure were collected across a series of transects in cooperation with a survey of avifauna in an effort to link the habitat edge structure with bird species responses. A test site was found that contained two types of habitat edges: 1) A structure specific edge - characterized by the appearance of a very strong structural change in the forest canopy occurring in the absence of a substantial turnover in floristics. 2) Floristic edge - a sharp transition in vegetation genetic composition with a mixed set of structural changes. Specific polarization combinations were selected that were highly correlated to a set of desired structural parameters found in the field data. Classification routines were employed to group radar pixels into 3 structural classes based on: the Surface Area to Volume ratio (SA/V) of the stems, the SA/V of the branches, and the leaf area index of the canopy. Separate canopy structure maps were then entered into the GIS and bird responses were observed relative to the classes and their boundaries. Follow-on work will consist of extending this approach to neighboring areas, generating structure maps, predicting bird responses across the edges, and make accuracy assessments.

Three-Dimensional Geologic Framework Model for a Karst Aquifer System, Hasty and Western Grove Quadrangles, Northern Arkansas

USGS Publications Warehouse

Turner, Kenzie J.; Hudson, Mark R.; Murray, Kyle E.; Mott, David N.

2007-01-01

Understanding ground-water flow in a karst aquifer benefits from a detailed conception of the three-dimensional (3D) geologic framework. Traditional two-dimensional products, such as geologic maps, cross-sections, and structure contour maps, convey a mental picture of the area but a stronger conceptualization can be achieved by constructing a digital 3D representation of the stratigraphic and structural geologic features. In this study, a 3D geologic model was created to better understand a karst aquifer system in the Buffalo National River watershed in northern Arkansas. The model was constructed based on data obtained from recent, detailed geologic mapping for the Hasty and Western Grove 7.5-minute quadrangles. The resulting model represents 11 stratigraphic zones of Ordovician, Mississippian, and Pennsylvanian age. As a result of the highly dissected topography, stratigraphic and structural control from geologic contacts and interpreted structure contours were sufficient for effectively modeling the faults and folds in the model area. Combined with recent dye-tracing studies, the 3D framework model is useful for visualizing the various geologic features and for analyzing the potential control they exert on the ground-water flow regime. Evaluation of the model, by comparison to published maps and cross-sections, indicates that the model accurately reproduces both the surface geology and subsurface geologic features of the area.

Camera pose estimation for augmented reality in a small indoor dynamic scene

NASA Astrophysics Data System (ADS)

Frikha, Rawia; Ejbali, Ridha; Zaied, Mourad

2017-09-01

Camera pose estimation remains a challenging task for augmented reality (AR) applications. Simultaneous localization and mapping (SLAM)-based methods are able to estimate the six degrees of freedom camera motion while constructing a map of an unknown environment. However, these methods do not provide any reference for where to insert virtual objects since they do not have any information about scene structure and may fail in cases of occlusion of three-dimensional (3-D) map points or dynamic objects. This paper presents a real-time monocular piece wise planar SLAM method using the planar scene assumption. Using planar structures in the mapping process allows rendering virtual objects in a meaningful way on the one hand and improving the precision of the camera pose and the quality of 3-D reconstruction of the environment by adding constraints on 3-D points and poses in the optimization process on the other hand. We proposed to benefit from the 3-D planes rigidity motion in the tracking process to enhance the system robustness in the case of dynamic scenes. Experimental results show that using a constrained planar scene improves our system accuracy and robustness compared with the classical SLAM systems.

Towards Unmanned Systems for Dismounted Operations in the Canadian Forces

DTIC Science & Technology

2011-01-01

LIDAR , and RADAR) and lower power/mass, passive imaging techniques such as structure from motion and simultaneous localisation and mapping ( SLAM ...sensors and learning algorithms. 5.1.2 Simultaneous localisation and mapping SLAM algorithms concurrently estimate a robot pose and a map of unique...locations and vehicle pose are part of the SLAM state vector and are estimated in each update step. AISS developed a monocular camera-based SLAM

Mapping of beef, sheep and goat food systems in Nairobi - A framework for policy making and the identification of structural vulnerabilities and deficiencies.

PubMed

Alarcon, Pablo; Fèvre, Eric M; Murungi, Maurice K; Muinde, Patrick; Akoko, James; Dominguez-Salas, Paula; Kiambi, Stella; Ahmed, Sohel; Häsler, Barbara; Rushton, Jonathan

2017-03-01

Nairobi is a large rapidly-growing city whose demand for beef, mutton and goat products is expected to double by 2030. The study aimed to map the Nairobi beef, sheep and goat systems structure and flows to identify deficiencies and vulnerabilities to shocks. Cross-sectional data were collected through focus group discussions and interviews with people operating in Nairobi ruminant livestock and meat markets and in the large processing companies. Qualitative and quantitative data were obtained about the type of people, animals, products and value adding activities in the chains, and their structural, spatial and temporal interactions. Mapping analysis was done in three different dimensions: people and product profiling (interactions of people and products), geographical (routes of animals and products) and temporal mapping (seasonal fluctuations). The results obtained were used to identify structural deficiencies and vulnerability factors in the system. Results for the beef food system showed that 44-55% of the city's beef supply flows through the 'local terminal markets', but that 54-64% of total supply is controlled by one 'meat market'. Numerous informal chains were identified, with independent livestock and meat traders playing a pivotal role in the functionality of these systems, and where most activities are conducted with inefficient quality control and under scarce and inadequate infrastructure and organisation, generating wastage and potential food safety risks in low quality meat products. Geographical and temporal analysis showed the critical areas influencing the different markets, with larger markets increasing their market share in the low season. Large processing companies, partly integrated, operate with high quality infrastructures, but with up to 60% of their beef supply depending on similar routes as the informal markets. Only these companies were involved in value addition activities, reaching high-end markets, but also dominating the distribution of popular products, such as beef sausages, to middle and low-end market. For the small ruminant food system, 73% of the low season supply flows through a single large informal market, Kiamaiko, located in an urban informal settlement. No grading is done for these animals or the meat produced. Large companies were reported to export up to 90% of their products. Lack of traceability and control of animal production was a common feature in all chains. The mapping presented provides a framework for policy makers and institutions to understand and design improvement plans for the Nairobi ruminant food system. The structural deficiencies and vulnerabilities identified here indicate the areas of intervention needed.

Mapping forest height in Alaska using GLAS, Landsat composites, and airborne LiDAR

USGS Publications Warehouse

Peterson, Birgit; Nelson, Kurtis

2014-01-01

Vegetation structure, including forest canopy height, is an important input variable to fire behavior modeling systems for simulating wildfire behavior. As such, forest canopy height is one of a nationwide suite of products generated by the LANDFIRE program. In the past, LANDFIRE has relied on a combination of field observations and Landsat imagery to develop existing vegetation structure products. The paucity of field data in the remote Alaskan forests has led to a very simple forest canopy height classification for the original LANDFIRE forest height map. To better meet the needs of data users and refine the map legend, LANDFIRE incorporated ICESat Geoscience Laser Altimeter System (GLAS) data into the updating process when developing the LANDFIRE 2010 product. The high latitude of this region enabled dense coverage of discrete GLAS samples, from which forest height was calculated. Different methods for deriving height from the GLAS waveform data were applied, including an attempt to correct for slope. These methods were then evaluated and integrated into the final map according to predefined criteria. The resulting map of forest canopy height includes more height classes than the original map, thereby better depicting the heterogeneity of the landscape, and provides seamless data for fire behavior analysts and other users of LANDFIRE data.

Analysis and Compensation for Lateral Chromatic Aberration in a Color Coding Structured Light 3D Measurement System.

PubMed

Huang, Junhui; Xue, Qi; Wang, Zhao; Gao, Jianmin

2016-09-03

While color-coding methods have improved the measuring efficiency of a structured light three-dimensional (3D) measurement system, they decreased the measuring accuracy significantly due to lateral chromatic aberration (LCA). In this study, the LCA in a structured light measurement system is analyzed, and a method is proposed to compensate the error caused by the LCA. Firstly, based on the projective transformation, a 3D error map of LCA is constructed in the projector images by using a flat board and comparing the image coordinates of red, green and blue circles with the coordinates of white circles at preselected sample points within the measurement volume. The 3D map consists of the errors, which are the equivalent errors caused by LCA of the camera and projector. Then in measurements, error values of LCA are calculated and compensated to correct the projector image coordinates through the 3D error map and a tri-linear interpolation method. Eventually, 3D coordinates with higher accuracy are re-calculated according to the compensated image coordinates. The effectiveness of the proposed method is verified in the following experiments.

Analysis and Compensation for Lateral Chromatic Aberration in a Color Coding Structured Light 3D Measurement System

PubMed Central

Huang, Junhui; Xue, Qi; Wang, Zhao; Gao, Jianmin

2016-01-01

While color-coding methods have improved the measuring efficiency of a structured light three-dimensional (3D) measurement system, they decreased the measuring accuracy significantly due to lateral chromatic aberration (LCA). In this study, the LCA in a structured light measurement system is analyzed, and a method is proposed to compensate the error caused by the LCA. Firstly, based on the projective transformation, a 3D error map of LCA is constructed in the projector images by using a flat board and comparing the image coordinates of red, green and blue circles with the coordinates of white circles at preselected sample points within the measurement volume. The 3D map consists of the errors, which are the equivalent errors caused by LCA of the camera and projector. Then in measurements, error values of LCA are calculated and compensated to correct the projector image coordinates through the 3D error map and a tri-linear interpolation method. Eventually, 3D coordinates with higher accuracy are re-calculated according to the compensated image coordinates. The effectiveness of the proposed method is verified in the following experiments. PMID:27598174

Phonological Learning with Output-Driven Maps

ERIC Educational Resources Information Center

Tesar, Bruce

2017-01-01

The concept of an output-driven map formally characterizes an intuitive notion about phonology: that disparities between the input and the output are introduced only to the extent necessary to satisfy restrictions on outputs. When all of the grammars definable in a phonological system are output-driven, the implied structure provides significant…

Differential Measurement Periodontal Structures Mapping System

NASA Technical Reports Server (NTRS)

Companion, John A. (Inventor)

1998-01-01

This invention relates to a periodontal structure mapping system employing a dental handpiece containing first and second acoustic sensors for locating the Cemento-Enamel Junction (CEJ) and measuring the differential depth between the CEJ and the bottom of the periodontal pocket. Measurements are taken at multiple locations on each tooth of a patient, observed, analyzed by an optical analysis subsystem, and archived by a data storage system for subsequent study and comparison with previous and subsequent measurements. Ultrasonic transducers for the first and second acoustic sensors are contained within the handpiece and in connection with a control computer. Pressurized water is provided for the depth measurement sensor and a linearly movable probe sensor serves as the sensor for the CEJ finder. The linear movement of the CEJ sensor is obtained by a control computer actuated by the prober. In an alternate embodiment, the CEJ probe is an optical fiber sensor with appropriate analysis structure provided therefor.

Detecting reactive islands using Lagrangian descriptors and the relevance to transition path sampling.

PubMed

Patra, Sarbani; Keshavamurthy, Srihari

2018-02-14

It has been known for sometime now that isomerization reactions, classically, are mediated by phase space structures called reactive islands (RI). RIs provide one possible route to correct for the nonstatistical effects in the reaction dynamics. In this work, we map out the reactive islands for the two dimensional Müller-Brown model potential and show that the reactive islands are intimately linked to the issue of rare event sampling. In particular, we establish the sensitivity of the so called committor probabilities, useful quantities in the transition path sampling technique, to the hierarchical RI structures. Mapping out the RI structure for high dimensional systems, however, is a challenging task. Here, we show that the technique of Lagrangian descriptors is able to effectively identify the RI hierarchy in the model system. Based on our results, we suggest that the Lagrangian descriptors can be useful for detecting RIs in high dimensional systems.

Where do students struggle in the field? Computer-aided evaluation of mapping errors from an undergraduate Field Geology summer course

NASA Astrophysics Data System (ADS)

Lang, K. A.; Petrie, G.

2014-12-01

Extended field-based summer courses provide an invaluable field experience for undergraduate majors in the geosciences. These courses often utilize the construction of geological maps and structural cross sections as the primary pedagogical tool to teach basic map orientation, rock identification and structural interpretation. However, advances in the usability and ubiquity of Geographic Information Systems in these courses presents new opportunities to evaluate student work. In particular, computer-based quantification of systematic mapping errors elucidates the factors influencing student success in the field. We present a case example from a mapping exercise conducted in a summer Field Geology course at a popular field location near Dillon, Montana. We use a computer algorithm to automatically compare the placement and attribution of unit contacts with spatial variables including topographic slope, aspect, bedding attitude, ground cover and distance from starting location. We compliment analyses with anecdotal and survey data that suggest both physical factors (e.g. steep topographic slope) as well as structural nuance (e.g. low angle bedding) may dominate student frustration, particularly in courses with a high student to instructor ratio. We propose mechanisms to improve student experience by allowing students to practice skills with orientation games and broadening student background with tangential lessons (e.g. on colluvial transport processes). As well, we suggest low-cost ways to decrease the student to instructor ratio by supporting returning undergraduates from previous years or staging mapping over smaller areas. Future applications of this analysis might include a rapid and objective system for evaluation of student maps (including point-data, such as attitude measurements) and quantification of temporal trends in student work as class sizes, pedagogical approaches or environmental variables change. Long-term goals include understanding and characterizing stochasticity in geological mapping beyond the undergraduate classroom, and better quantifying uncertainty in published map products.

Performance analysis of a compact and low-cost mapping-grade mobile laser scanning system

NASA Astrophysics Data System (ADS)

Julge, Kalev; Vajakas, Toivo; Ellmann, Artu

2017-10-01

The performance of a low-cost, self-contained, compact, and easy to deploy mapping-grade mobile laser scanning (MLS) system, which is composed of a light detection and ranging sensor Velodyne VLP-16 and a dual antenna global navigation satellite system/inertial navigation system SBG Systems Ellipse-D, is analyzed. The field tests were carried out in car-mounted and backpack modes for surveying road engineering structures (such as roads, parking lots, underpasses, and tunnels) and coastal erosion zones, respectively. The impact of applied calculation principles on trajectory postprocessing, direct georeferencing, and the theoretical accuracy of the system is analyzed. A calibration method, based on Bound Optimization BY Quadratic Approximation, for finding the boresight angles of an MLS system is proposed. The resulting MLS point clouds are compared with high-accuracy static terrestrial laser scanning data and survey-grade MLS data from a commercially manufactured MLS system. The vertical, horizontal, and relative accuracy are assessed-the root-mean-square error (RMSE) values were determined to be 8, 15, and 3 cm, respectively. Thus, the achieved mapping-grade accuracy demonstrates that this relatively compact and inexpensive self-assembled MLS can be successfully used for surveying the geometry and deformations of terrain, buildings, road, and other engineering structures.

SEPAC flight software detailed design specifications, volume 1

NASA Technical Reports Server (NTRS)

1982-01-01

The detailed design specifications (as built) for the SEPAC Flight Software are defined. The design includes a description of the total software system and of each individual module within the system. The design specifications describe the decomposition of the software system into its major components. The system structure is expressed in the following forms: the control-flow hierarchy of the system, the data-flow structure of the system, the task hierarchy, the memory structure, and the software to hardware configuration mapping. The component design description includes details on the following elements: register conventions, module (subroutines) invocaton, module functions, interrupt servicing, data definitions, and database structure.

Mapping the categories of the Swedish primary health care version of ICD-10 to SNOMED CT concepts: Rule development and intercoder reliability in a mapping trial

PubMed Central

Vikström, Anna; Skånér, Ylva; Strender, Lars-Erik; Nilsson, Gunnar H

2007-01-01

Background Terminologies and classifications are used for different purposes and have different structures and content. Linking or mapping terminologies and classifications has been pointed out as a possible way to achieve various aims as well as to attain additional advantages in describing and documenting health care data. The objectives of this study were: • to explore and develop rules to be used in a mapping process • to evaluate intercoder reliability and the assessed degree of concordance when the 'Swedish primary health care version of the International Classification of Diseases version 10' (ICD-10) is matched to the Systematized Nomenclature of Medicine, Clinical Terms (SNOMED CT) • to describe characteristics in the coding systems that are related to obstacles to high quality mapping. Methods Mapping (interpretation, matching, assessment and rule development) was done by two coders. The Swedish primary health care version of ICD-10 with 972 codes was randomly divided into an allotment of three sets of categories, used in three mapping sequences, A, B and C. Mapping was done independently by the coders and new rules were developed between the sequences. Intercoder reliability was measured by comparing the results after each set. The extent of matching was assessed as either 'partly' or 'completely concordant' Results General principles for mapping were outlined before the first sequence, A. New mapping rules had significant impact on the results between sequences A - B (p < 0.01) and A - C (p < 0.001). The intercoder reliability in our study reached 83%. Obstacles to high quality mapping were mainly a lack of agreement by the coders due to structural and content factors in SNOMED CT and in the current ICD-10 version. The predominant reasons for this were difficulties in interpreting the meaning of the categories in the current ICD-10 version, and the presence of many related concepts in SNOMED CT. Conclusion Mapping from ICD-10-categories to SNOMED CT needs clear and extensive rules. It is possible to reach high intercoder reliability in mapping from ICD-10-categories to SNOMED CT. However, several obstacles to high quality mapping remain due to structure and content characteristics in both coding systems. PMID:17472757

A dynamical system view of cerebellar function

NASA Astrophysics Data System (ADS)

Keeler, James D.

1990-06-01

First some previous theories of cerebellar function are reviewed, and deficiencies in how they map onto the neurophysiological structure are pointed out. I hypothesize that the cerebellar cortex builds an internal model, or prediction, of the dynamics of the animal. A class of algorithms for doing prediction based on local reconstruction of attractors are described, and it is shown how this class maps very well onto the structure of the cerebellar cortex. I hypothesize that the climbing fibers multiplex between different trajectories corresponding to different modes of operation. Then the vestibulo-ocular reflex is examined, and experiments to test the proposed model are suggested. The purpose of the presentation here is twofold: (1) To enlighten physiologists to the mathematics of a class of prediction algorithms that map well onto cerebellar architecture. (2) To enlighten dynamical system theorists to the physiological and anatomical details of the cerebellum.

A 125 year history of topographic mapping and GIS in the U.S. Geological Survey 1884-2009, part 2: 1980-2009

USGS Publications Warehouse

Usery, E. Lynn; Varanka, Dalia; Finn, Michael P.

2009-01-01

The United States Geological Survey (USGS) entered the mainstream of developments in computer-assisted technology for mapping during the 1970s. The introduction by USGS of digital line graphs (DLGs), digital elevation models (DEMs), and land use data analysis (LUDA) nationwide land-cover data provided a base for the rapid expansion of the use of GIS in the 1980s. Whereas USGS had developed the topologically structured DLG data and the Geographic Information Retrieval and Analysis System (GIRAS) for land-cover data, the Map Overlay Statistical System (MOSS), a nontopologically structured GIS software package developed by Autometric, Inc., under contract to the U.S. Fish and Wildlife Service, dominated the use of GIS by federal agencies in the 1970s. Thus, USGS data was used in MOSS, but the topological structure, which later became a requirement for GIS vector datasets, was not used in early GIS applications. The introduction of Esri's ARC/INFO in 1982 changed that, and by the end of the 1980s, topological structure for vector data was essential, and ARC/INFO was the dominant GIS software package used by federal agencies.

Apport de la gravimétrie à l'étude de la structure du bassin des Triffa (Maroc nord-oriental) : implications hydrogéologiques

NASA Astrophysics Data System (ADS)

Khattach, Driss; Keating, Pierre; Mili, El Mostafa; Chennouf, Touria; Andrieux, Pierre; Milhi, Abdellah

2004-12-01

Various techniques (horizontal and vertical derivatives, upward continuation, Euler deconvolution) have been applied to the gravity data from the Triffa's plain and the north flank of the Beni-Snassen massif to delineate various major geological structures such as faults and basins. These results allow the production of a structural map showing the fault systems for the survey area. This map forms the basis for planning future hydrogeological research in this region. To cite this article: D. Khattach et al., C. R. Geoscience 336 (2004).

Comparison of Content Structure and Cognitive Structure in the Learning of Probability.

ERIC Educational Resources Information Center

Geeslin, William E.

Digraphs, graphs, and task analysis were used to map out the content structure of a programed text (SMSG) in elementary probability. Mathematical structure was defined as the relationship between concepts within a set of abstract systems. The word association technique was used to measure the existing relations (cognitive structure) in S's memory…

Crust structure beneath Jilin Province and Liaoning Province in China based on seismic ambient noise tomography

NASA Astrophysics Data System (ADS)

Pang, Guanghua; Feng, Jikun; Lin, Jun

2016-11-01

We imaged the crust structure beneath Jilin Province and Liaoning Province in China with fundamental mode Rayleigh waves recorded by 60 broadband stations deployed in the region. Surface-wave empirical Green's functions were retrieved from cross-correlations of inter-station data and phase velocity dispersions were measured using a frequency-time analysis method. Dispersion measurements were then utilized to construct 2D phase velocity maps for periods between 5 and 35 s. Subsequently, the phase-dispersion curves extracted from each cell of the 2D phase velocity maps were inverted to determine the 3D shear wave velocity structures of the crust. The phase velocity maps at different periods reflected the average velocity structures corresponding to different depth ranges. The maps in short periods, in particular, were in excellent agreement with known geological features of the surface. In addition to imaging shear wave velocity structures of the volcanoes, we show that obvious low-velocity anomalies imaged in the Changbaishan-Tianchi Volcano, the Longgang-Jinlongdingzi Volcano, and the system of the Dunmi Fault crossing the Jingbohu Volcano, all of which may be due to geothermal anomalies.

1986 Year End Report for Road Following at Carnegie-Mellon

DTIC Science & Technology

1987-05-01

how to make them work efficiently. We designed a hierarchical structure and a monitor module which manages all parts of the hierarchy (see figure 1...database, called the Local Map, is managed by a program known as the Local Map Builder (LMB). Each module stores and retrieves information in the...knowledge-intensive modules, and a database manager that synchronizes the modules-is characteristic of a traditional blackboard system. Such a system is

XMM Observations of Low Mass Groups

NASA Technical Reports Server (NTRS)

Davis, David S.

2005-01-01

The contents of this report contains discussion of the two-dimensional XMM-Newton group survey. The analysis of the NGC 2300 and Pavo observations indicated by the azimuthally averaged analysis that the temperature structure is minimal to the NGC2300 system; however, the Pavo system shows signs of a merger in progress. XMM data is used to generate two dimensional maps of the temperature and abundance used to generate maps of pressure and entropy.

On the interaction structure of linear multi-input feedback control systems. M.S. Thesis; [problem solving, lattices (mathematics)

NASA Technical Reports Server (NTRS)

Wong, P. K.

1975-01-01

The closely-related problems of designing reliable feedback stabilization strategy and coordinating decentralized feedbacks are considered. Two approaches are taken. A geometric characterization of the structure of control interaction (and its dual) was first attempted and a concept of structural homomorphism developed based on the idea of 'similarity' of interaction pattern. The idea of finding classes of individual feedback maps that do not 'interfere' with the stabilizing action of each other was developed by identifying the structural properties of nondestabilizing and LQ-optimal feedback maps. Some known stability properties of LQ-feedback were generalized and some partial solutions were provided to the reliable stabilization and decentralized feedback coordination problems. A concept of coordination parametrization was introduced, and a scheme for classifying different modes of decentralization (information, control law computation, on-line control implementation) in control systems was developed.

US Topo Maps 2014: Program updates and research

USGS Publications Warehouse

Fishburn, Kristin A.

2014-01-01

The U. S. Geological Survey (USGS) US Topo map program is now in year two of its second three-year update cycle. Since the program was launched in 2009, the product and the production system tools and processes have undergone enhancements that have made the US Topo maps a popular success story. Research and development continues with structural and content product enhancements, streamlined and more fully automated workflows, and the evaluation of a GIS-friendly US Topo GIS Packet. In addition, change detection methodologies are under evaluation to further streamline product maintenance and minimize resource expenditures for production in the future. The US Topo map program will continue to evolve in the years to come, providing traditional map users and Geographic Information System (GIS) analysts alike with a convenient, freely available product incorporating nationally consistent data that are quality assured to high standards.

Geologic and structure map of the Choteau 1 degree by 2 degrees Quadrangle, western Montana

USGS Publications Warehouse

Mudge, Melville R.; Earhart, Robert L.; Whipple, James W.; Harrison, Jack E.

1982-01-01

The geologic and structure map of Choteau 1 x 2 degree quadrangle (Mudge and others, 1982) was originally converted to a digital format by Jeff Silkwood (U.S. Forest Service and completed by the U.S. Geological Survey staff and contractor at the Spokane Field Office (WA) in 2000 for input into a geographic information system (GIS). The resulting digital geologic map (GIS) database can be queried in many ways to produce a variey of geologic maps. Digital base map data files (topography, roads, towns, rivers and lakes, etc.) are not included: they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:250,000 (e.g. 1:100,000 or 1:24,000. The digital geologic map graphics and plot files (chot250k.gra/.hp/.eps and chot-map.pdf) that are provided in the digital package are representations of the digital database. They are not designed to be cartographic products.

Bedrock geologic map of the Hartland and North Hartland quadrangles, Windsor County, Vermont, and Sullivan and Grafton Counties, New Hampshire

USGS Publications Warehouse

Walsh, Gregory J.

2016-08-16

This report consists of sheets 1 and 2 as well as an online geographic information systems database that includes contacts of bedrock geologic units, faults, outcrops, structural geologic information, and photographs. Sheet 2 of this report shows three cross sections, a tectonic map, and two brittle features maps that show measured outcrop-scale strike and dip results with summary stereonets and rose diagrams.

Hydrogeology, groundwater levels, and generalized potentiometric-surface map of the Green River Basin lower Tertiary aquifer system, 2010–14, in the northern Green River structural basin

USGS Publications Warehouse

Bartos, Timothy T.; Hallberg, Laura L.; Eddy-Miller, Cheryl

2015-07-14

The groundwater-level measurements were used to construct a generalized potentiometric-surface map of the Green River Basin lower Tertiary aquifer system. Groundwater-level altitudes measured in nonflowing and flowing wells used to construct the potentiometric-surface map ranged from 6,451 to 7,307 feet (excluding four unmeasured flowing wells used for contour construction purposes). The potentiometric-surface map indicates that groundwater in the study area generally moves from north to south, but this pattern of flow is altered locally by groundwater divides, groundwater discharge to the Green River, and possibly to a tributary river (Big Sandy River) and two reservoirs (Fontenelle and Big Sandy Reservoirs).

Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.

PubMed

Wang, Ray Yu-Ruei; Song, Yifan; Barad, Benjamin A; Cheng, Yifan; Fraser, James S; DiMaio, Frank

2016-09-26

Cryo-EM has revealed the structures of many challenging yet exciting macromolecular assemblies at near-atomic resolution (3-4.5Å), providing biological phenomena with molecular descriptions. However, at these resolutions, accurately positioning individual atoms remains challenging and error-prone. Manually refining thousands of amino acids - typical in a macromolecular assembly - is tedious and time-consuming. We present an automated method that can improve the atomic details in models that are manually built in near-atomic-resolution cryo-EM maps. Applying the method to three systems recently solved by cryo-EM, we are able to improve model geometry while maintaining the fit-to-density. Backbone placement errors are automatically detected and corrected, and the refinement shows a large radius of convergence. The results demonstrate that the method is amenable to structures with symmetry, of very large size, and containing RNA as well as covalently bound ligands. The method should streamline the cryo-EM structure determination process, providing accurate and unbiased atomic structure interpretation of such maps.

Classification and spatial mapping of riparian habitat with applications toward management of streams impacted by nonpoint source pollution

NASA Astrophysics Data System (ADS)

Delong, Michael D.; Brusven, Merlyn A.

1991-07-01

Management of riparian habitats has been recognized for its importance in reducing instream effects of agricultural nonpoint source pollution. By serving as a buffer, well structured riparian habitats can reduce nonpoint source impacts by filtering surface runoff from field to stream. A system has been developed where key characteristics of riparian habitat, vegetation type, height, width, riparian and shoreline bank slope, and land use are classified as discrete categorical units. This classification system recognizes seven riparian vegetation types, which are determined by dominant plant type. Riparian and shoreline bank slope, in addition to riparian width and height, each consist of five categories. Classification by discrete units allows for ready digitizing of information for production of spatial maps using a geographic information system (GIS). The classification system was tested for field efficiency on Tom Beall Creek watershed, an agriculturally impacted third-order stream in the Clearwater River drainage, Nez Perce County, Idaho, USA. The classification system was simple to use during field applications and provided a good inventory of riparian habitat. After successful field tests, spatial maps were produced for each component using the Professional Map Analysis Package (pMAP), a GIS program. With pMAP, a map describing general riparian habitat condition was produced by combining the maps of components of riparian habitat, and the condition map was integrated with a map of soil erosion potential in order to determine areas along the stream that are susceptible to nonpoint source pollution inputs. Integration of spatial maps of riparian classification and watershed characteristics has great potential as a tool for aiding in making management decisions for mitigating off-site impacts of agricultural nonpoint source pollution.

The First Global Geological Map of Mercury

NASA Astrophysics Data System (ADS)

Prockter, L. M.; Head, J. W., III; Byrne, P. K.; Denevi, B. W.; Kinczyk, M. J.; Fassett, C.; Whitten, J. L.; Thomas, R.; Ernst, C. M.

2015-12-01

Geological maps are tools with which to understand the distribution and age relationships of surface geological units and structural features on planetary surfaces. Regional and limited global mapping of Mercury has already yielded valuable science results, elucidating the history and distribution of several types of units and features, such as regional plains, tectonic structures, and pyroclastic deposits. To date, however, no global geological map of Mercury exists, and there is currently no commonly accepted set of standardized unit descriptions and nomenclature. With MESSENGER monochrome image data, we are undertaking the global geological mapping of Mercury at the 1:15M scale applying standard U.S. Geological Survey mapping guidelines. This map will enable the development of the first global stratigraphic column of Mercury, will facilitate comparisons among surface units distributed discontinuously across the planet, and will provide guidelines for mappers so that future mapping efforts will be consistent and broadly interpretable by the scientific community. To date we have incorporated three major datasets into the global geological map: smooth plains units, tectonic structures, and impact craters and basins >20 km in diameter. We have classified most of these craters by relative age on the basis of the state of preservation of morphological features and standard classification schemes first applied to Mercury by the Mariner 10 imaging team. Additional datasets to be incorporated include intercrater plains units and crater ejecta deposits. In some regions MESSENGER color data is used to supplement the monochrome data, to help elucidate different plains units. The final map will be published online, together with a peer-reviewed publication. Further, a digital version of the map, containing individual map layers, will be made publicly available for use within geographic information systems (GISs).

Evolution of supraglacial brittle and ductile structures and drainage systems at a partly debris-covered alpine valley glacier during a 15 yr period

NASA Astrophysics Data System (ADS)

Kellerer-Pirklbauer, Andreas; Kulmer, Bernd

2016-04-01

Based on five glacier stages (1998, 2003, 2006, 2009 and 2012) covering a period of 15 years, supraglacial crevasses and other structures as well as the drainage system at the tongue of Pasterze Glacier were mapped and interpreted. Pasterze Glacier is the largest glacier (c.16.5 km2) of the entire Eastern European Alps located in the Hohe Tauern Range, Central Austria at 47°05'N and 12°43'E. The glacier is in a stage of rapid recession and downwasting. The tongue is connected with the firn area by a mighty ice fall. 75% of the c.4.5 km long glacier tongue is covered by a supraglacial debris cover affecting glacier surface morphology related to differential ablation influencing the glacier's stress and strain field. High resolution orthoimagery and digital elevation models/DEM (both data sets with 20-50 cm grid resolution) were analysed. A structure glaciological mapping key was applied to discern relevant brittle (normal faults, thrust faults, strike-slip faults commonly associated with and en èchelon structures, and ice disintegration expressed as normal faults) and ductile structures (band ogives). Additionally, a geometric mapping key was used differentiating between chevron, splaying, transverse, and longitudinal crevasses as well as complex crevasse fields related to ice disintegration (commonly circular and semi-circular collapse features). The drainage system was mapped differentiating between supraglacial channels and moulins. Observations made during annual glacier measurement campaigns were additionally considered. Results indicate that the lower half of the glacier tongue was characterised during the observation period by ice disintegration (with semi-circular collapse features since 2003 near the glacier terminus and since 2009 in the central part) and thrust faults with downslope convexity (steady upslope migration of first occurrence during the observation period). In general, the crevasse density increased towards the left (NE), less debris covered margin. Since 2009 the number of crevasses (particularly normal faults) increased at the continuously debris-covered part of the tongue related to differential ablation. In contrast, a reduction of en èchelon structures since 2006 was observed related to decreasing glacier movement rates. The total length of mapped brittle structures increased by trend with 38.3 km in 1998, 49.4 km in 2003, 53.3 km in 2006, 64.2 km in 2009, and 56.9 km in 2012. The length of mapped supraglacial channels was 6.2 km in 1998, 11.7 km in 2003, 10.9 km in 2006, 18.1 km in 2009, and 12.1 km in 2012. Based on the mapped band ogives (in some years mappable >3km below the ice fall) three different flow units were detected related to different source areas of the glacier. However, an increase in the spatial extent of the supraglacial debris cover hampered ogive mapping for the more recent stages. DEM differencing revealed a strong correlation between high surface differences and spatial distribution of brittle structures. A large number of brittle structures can therefore be described as being increasingly independent from glacier motion. These structures can be rather seen as adjustment to high relief. Therefore, we can conclude that the tongue of Pasterze Glacier is currently slowly turning into a large dead ice body characterized by movement cessation and ice disintegration and related normal fractures.

On a useful functional representation of control system structure

NASA Technical Reports Server (NTRS)

Malchow, Harvey L.

1988-01-01

An alternative structure for control systems is proposed. The structure is represented by a three-element block diagram and three functional definitions. It is argued that the three functional elements form a canonical set. The set includes the functions description, estimation and control. General overlay of the structure on parallel state and nested-state control systems is discussed. Breakdown of two real nested-state control systems into the proposed functional format is displayed. Application of the process to the mapping of complex control systems R and D efforts is explained with the Mars Rover Sample and Return mission as an example. A previous application of this basic functional structure to Space Station performance requirements organization is discussed.

New developments in ground probing radar for Earth resource mapping and planetology

NASA Astrophysics Data System (ADS)

Cattermole, P. J.; Junkin, G.; Finkelstein, M. I.; Kingsley, S. P.

1992-07-01

Ground probing radar is a well established technique for locating buried objects and has found application in resource mapping. The development of this technology for the Mars exploration programme has lead to lightweight systems with potential applications for investigating shallow geological structures on Earth, Mars and Venus. Recent advances in ground probing radar technology for planetary exploration include the development of single-antenna systems with improved beam focussing into the ground and a move to lower frequencies which considerably extends the depth penetration in dry ground. These systems are designed for mobility and could form the basis of autonomous mapping systems for terrestrial exploration. Such systems would be particularly valuable for water resource surveying in arid and semi-arid regions, where there is a need to have lightweight instrumentation that can be moved into sometimes inhospitable terrain.

Application of Contraction Mappings to the Control of Nonlinear Systems. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Killingsworth, W. R., Jr.

1972-01-01

The theoretical and applied aspects of successive approximation techniques are considered for the determination of controls for nonlinear dynamical systems. Particular emphasis is placed upon the methods of contraction mappings and modified contraction mappings. It is shown that application of the Pontryagin principle to the optimal nonlinear regulator problem results in necessary conditions for optimality in the form of a two point boundary value problem (TPBVP). The TPBVP is represented by an operator equation and functional analytic results on the iterative solution of operator equations are applied. The general convergence theorems are translated and applied to those operators arising from the optimal regulation of nonlinear systems. It is shown that simply structured matrices and similarity transformations may be used to facilitate the calculation of the matrix Green functions and the evaluation of the convergence criteria. A controllability theory based on the integral representation of TPBVP's, the implicit function theorem, and contraction mappings is developed for nonlinear dynamical systems. Contraction mappings are theoretically and practically applied to a nonlinear control problem with bounded input control and the Lipschitz norm is used to prove convergence for the nondifferentiable operator. A dynamic model representing community drug usage is developed and the contraction mappings method is used to study the optimal regulation of the nonlinear system.

A Discrete Global Grid System Programming Language Using MapReduce

NASA Astrophysics Data System (ADS)

Peterson, P.; Shatz, I.

2016-12-01

A discrete global grid system (DGGS) is a powerful mechanism for storing and integrating geospatial information. As a "pixelization" of the Earth, many image processing techniques lend themselves to the transformation of data values referenced to the DGGS cells. It has been shown that image algebra, as an example, and advanced algebra, like Fast Fourier Transformation, can be used on the DGGS tiling structure for geoprocessing and spatial analysis. MapReduce has been shown to provide advantages for processing and generating large data sets within distributed and parallel computing. The DGGS structure is ideally suited for big distributed Earth data. We proposed that basic expressions could be created to form the atoms of a generalized DGGS language using the MapReduce programming model. We created three very efficient expressions: Selectors (aka filter) - A selection function that generate a set of cells, cell collections, or geometries; Calculators (aka map) - A computational function (including quantization of raw measurements and data sources) that generate values in a DGGS cell; and Aggregators (aka reduce) - A function that generate spatial statistics from cell values within a cell. We found that these three basic MapReduce operations along with a forth function, the Iterator, for horizontal and vertical traversing of any DGGS structure, provided simple building block resulting in very efficient operations and processes that could be used with any DGGS. We provide examples and a demonstration of their effectiveness using the ISEA3H DGGS on the PYXIS Studio.

Integration of satellite gravity data with ground-based geophysical data for a better understanding of the structural control of groundwater flow in the Nubian Sandstone Aquifer System

NASA Astrophysics Data System (ADS)

Fathy, K.; Sultan, M.; Bettadpur, S. V.; Save, H.; Ahmed, M.; Zahran, K. H.; Emil, M. K.; Helaly, A.; Abotalib, A. Z.; Ismaiel, A.

2016-12-01

The Nubian Sandstone Aquifer System (NSAS) extends beyond Egypt's political boundaries to cover eastern Libya, northern and central Sudan and northeast Chad. The optimum utilization of this resource requires a better understanding of the connectivity of the NSAS sub-basins and the structural control on groundwater flow throughout the system. We provide an integrated (geophysics, remote sensing and field) approach to address these issues. Firstly, we evaluated GOCE-based global Geopotential models (GGMs) compared to the terrestrial gravity anomalies for 21262 sites to select the optimum model for deriving Bouguer gravity datasets. The Eigen-6C4 was found to have the lowest deviation from the terrestrial gravity anomalies. Secondly, structures and uplifts were mapped on the surface and in the sub-surface. Extensive N-S to NW-SE trending grabens were delineated in areas proximal to the Nile Valley using Palsar-derived DEMs, and hill shade maps; these depressions are here interpreted as basement structures that were reactivated during the opening of the Red Sea and the Gulf of Suez. The sinistral E-W trending faults and shear zones of the Syrian Arc were mapped in northern Egypt from Sinai and across the Eastern and Western Deserts. These structures were mapped on the surface using hill shade images and their extension in the subsurface was successfully detected from Eigen-6C4 model-derived Bouguer and TDR maps. The E-W trending basement uplift (Uweinat-Aswan uplift) was mapped in southern Egypt and the N-S trending Uweinat-Howar uplift was delineated in western Sudan and eastern Chad using TDR maps. Thirdly, hydrological analysis was conducted using GRACE spherical harmonic solutions (RL05), and CSR 0.5° X 0.5°, and JPL Mascon solutions. These showed: (1) pronounced TWS depletion over the Dakhla basin (average of three solutions: -3.03 mm/yr); (2) the south to north groundwater flow from Sudan to Egypt is impeded by the E-W trending Uweinat-Aswan basement uplift, yet the southwest to northeast flow from Chad into Sudan is not obstructed by the Uweinat-Howar uplift, (3) the E-W trending faults and shear zones impede groundwater flow to the north and act as conduits for deep-seated groundwater discharge on the surface in natural depressions (e.g., Qattara) and in the overlying layers.

Three-dimensional imaging of the S-velocity structure for the crust and the upper mantle beneath the Arabian Sea from Rayleigh wave analysis

NASA Astrophysics Data System (ADS)

Corchete, V.

2017-04-01

A 3D imaging of S-velocity for the Arabian Sea crust and upper mantle structure is presented in this paper, determined by means of Rayleigh wave analysis, for depths ranging from zero to 300 km. The crust and upper mantle structure of this region of the earth never has been the subject of a surface wave tomography survey. The Moho map performed in the present study is a new result, in which a crustal thickening beneath the Arabian Fan sediments can be observed. This crustal thickening can be interpreted as a quasi-continental oceanic transitional structure. A crustal thickness of up to 20 km also can be observed for the Murray Ridge system in this Moho map. This crustal thickening can be due to that the Murray Ridge System consists of Indian continental crust. This continental crust is extremely thinned to the southwest of this region, as shown in this Moho map. This area can be interpreted as oceanic in origin. In the depth range from 30 to 60 km, the S-velocity presents its lower values at the Carlsberg Ridge region, because it is the younger region of the study area. In the depth range from 60 to 105 km of depth, the S-velocity pattern is very similar to that shown for the previous depth range, except for the regions in which the asthenosphere is reached, for these regions appear a low S-velocity pattern. The lithosphere-asthenosphere boundary (LAB), or equivalently the lithosphere thickness, determined in the present study is also a new result, in which the lithosphere thickness for the Arabian Fan can be estimated in 60-70 km. The lower lithospheric thickness observed in the LAB map, for the Arabian Fan, shows that this region may be in the transition zone between continental and oceanic structure. Finally, a low-velocity zone (LVZ) has been determined, for the whole study area, located between the LAB and the boundary of the asthenosphere base (or equivalently the lithosphere-asthenosphere system thickness). The asthenosphere-base map calculated in the present study is also a new result.

Computer-Aided Classification of Visual Ventilation Patterns in Patients with Chronic Obstructive Pulmonary Disease at Two-Phase Xenon-Enhanced CT

PubMed Central

Yoon, Soon Ho; Jung, Julip; Hong, Helen; Park, Eun Ah; Lee, Chang Hyun; Lee, Youkyung; Jin, Kwang Nam; Choo, Ji Yung; Lee, Nyoung Keun

2014-01-01

Objective To evaluate the technical feasibility, performance, and interobserver agreement of a computer-aided classification (CAC) system for regional ventilation at two-phase xenon-enhanced CT in patients with chronic obstructive pulmonary disease (COPD). Materials and Methods Thirty-eight patients with COPD underwent two-phase xenon ventilation CT with resulting wash-in (WI) and wash-out (WO) xenon images. The regional ventilation in structural abnormalities was visually categorized into four patterns by consensus of two experienced radiologists who compared the xenon attenuation of structural abnormalities with that of adjacent normal parenchyma in the WI and WO images, and it served as the reference. Two series of image datasets of structural abnormalities were randomly extracted for optimization and validation. The proportion of agreement on a per-lesion basis and receiver operating characteristics on a per-pixel basis between CAC and reference were analyzed for optimization. Thereafter, six readers independently categorized the regional ventilation in structural abnormalities in the validation set without and with a CAC map. Interobserver agreement was also compared between assessments without and with CAC maps using multirater κ statistics. Results Computer-aided classification maps were successfully generated in 31 patients (81.5%). The proportion of agreement and the average area under the curve of optimized CAC maps were 94% (75/80) and 0.994, respectively. Multirater κ value was improved from moderate (κ = 0.59; 95% confidence interval [CI], 0.56-0.62) at the initial assessment to excellent (κ = 0.82; 95% CI, 0.79-0.85) with the CAC map. Conclusion Our proposed CAC system demonstrated the potential for regional ventilation pattern analysis and enhanced interobserver agreement on visual classification of regional ventilation. PMID:24843245

Computer-aided classification of visual ventilation patterns in patients with chronic obstructive pulmonary disease at two-phase xenon-enhanced CT.

PubMed

Yoon, Soon Ho; Goo, Jin Mo; Jung, Julip; Hong, Helen; Park, Eun Ah; Lee, Chang Hyun; Lee, Youkyung; Jin, Kwang Nam; Choo, Ji Yung; Lee, Nyoung Keun

2014-01-01

To evaluate the technical feasibility, performance, and interobserver agreement of a computer-aided classification (CAC) system for regional ventilation at two-phase xenon-enhanced CT in patients with chronic obstructive pulmonary disease (COPD). Thirty-eight patients with COPD underwent two-phase xenon ventilation CT with resulting wash-in (WI) and wash-out (WO) xenon images. The regional ventilation in structural abnormalities was visually categorized into four patterns by consensus of two experienced radiologists who compared the xenon attenuation of structural abnormalities with that of adjacent normal parenchyma in the WI and WO images, and it served as the reference. Two series of image datasets of structural abnormalities were randomly extracted for optimization and validation. The proportion of agreement on a per-lesion basis and receiver operating characteristics on a per-pixel basis between CAC and reference were analyzed for optimization. Thereafter, six readers independently categorized the regional ventilation in structural abnormalities in the validation set without and with a CAC map. Interobserver agreement was also compared between assessments without and with CAC maps using multirater κ statistics. Computer-aided classification maps were successfully generated in 31 patients (81.5%). The proportion of agreement and the average area under the curve of optimized CAC maps were 94% (75/80) and 0.994, respectively. Multirater κ value was improved from moderate (κ = 0.59; 95% confidence interval [CI], 0.56-0.62) at the initial assessment to excellent (κ = 0.82; 95% CI, 0.79-0.85) with the CAC map. Our proposed CAC system demonstrated the potential for regional ventilation pattern analysis and enhanced interobserver agreement on visual classification of regional ventilation.

A New Map of Standardized Terrestrial Ecosystems of the Conterminous United States

USGS Publications Warehouse

Sayre, Roger G.; Comer, Patrick; Warner, Harumi; Cress, Jill

2009-01-01

A new map of standardized, mesoscale (tens to thousands of hectares) terrestrial ecosystems for the conterminous United States was developed by using a biophysical stratification approach. The ecosystems delineated in this top-down, deductive modeling effort are described in NatureServe's classification of terrestrial ecological systems of the United States. The ecosystems were mapped as physically distinct areas and were associated with known distributions of vegetation assemblages by using a standardized methodology first developed for South America. This approach follows the geoecosystems concept of R.J. Huggett and the ecosystem geography approach of R.G. Bailey. Unique physical environments were delineated through a geospatial combination of national data layers for biogeography, bioclimate, surficial materials lithology, land surface forms, and topographic moisture potential. Combining these layers resulted in a comprehensive biophysical stratification of the conterminous United States, which produced 13,482 unique biophysical areas. These were considered as fundamental units of ecosystem structure and were aggregated into 419 potential terrestrial ecosystems. The ecosystems classification effort preceded the mapping effort and involved the independent development of diagnostic criteria, descriptions, and nomenclature for describing expert-derived ecological systems. The aggregation and labeling of the mapped ecosystem structure units into the ecological systems classification was accomplished in an iterative, expert-knowledge-based process using automated rulesets for identifying ecosystems on the basis of their biophysical and biogeographic attributes. The mapped ecosystems, at a 30-meter base resolution, represent an improvement in spatial and thematic (class) resolution over existing ecoregionalizations and are useful for a variety of applications, including ecosystem services assessments, climate change impact studies, biodiversity conservation, and resource management.

Use of 3D vision for fine robot motion

NASA Technical Reports Server (NTRS)

Lokshin, Anatole; Litwin, Todd

1989-01-01

An integration of 3-D vision systems with robot manipulators will allow robots to operate in a poorly structured environment by visually locating targets and obstacles. However, by using computer vision for objects acquisition makes the problem of overall system calibration even more difficult. Indeed, in a CAD based manipulation a control architecture has to find an accurate mapping between the 3-D Euclidean work space and a robot configuration space (joint angles). If a stereo vision is involved, then one needs to map a pair of 2-D video images directly into the robot configuration space. Neural Network approach aside, a common solution to this problem is to calibrate vision and manipulator independently, and then tie them via common mapping into the task space. In other words, both vision and robot refer to some common Absolute Euclidean Coordinate Frame via their individual mappings. This approach has two major difficulties. First a vision system has to be calibrated over the total work space. And second, the absolute frame, which is usually quite arbitrary, has to be the same with a high degree of precision for both robot and vision subsystem calibrations. The use of computer vision to allow robust fine motion manipulation in a poorly structured world which is currently in progress is described along with the preliminary results and encountered problems.

Geologic Map of the Thaumasia Region, Mars

USGS Publications Warehouse

Dohm, Janes M.; Tanaka, Kenneth L.; Hare, Trent M.

2001-01-01

The geology of the Thaumasia region (fig. 1, sheet 3) includes a wide array of rock materials, depositional and erosional landforms, and tectonic structures. The region is dominated by the Thaumasia plateau, which includes central high lava plains ringed by highly deformed highlands; the plateau may comprise the ancestral center of Tharsis tectonism (Frey, 1979; Plescia and Saunders, 1982). The extensive structural deformation of the map region, which is without parallel on Mars in both complexity and diversity, occurred largely throughout the Noachian and Hesperian periods (Tanaka and Davis, 1988; Scott and Dohm, 1990a). The deformation produced small and large extensional and contractional structures (fig. 2, sheet 3) that resulted from stresses related to the formation of Tharsis (Frey, 1979; Wise and others, 1979; Plescia and Saunders, 1982; Banerdt and others, 1982, 1992; Watters and Maxwell, 1986; Tanaka and Davis, 1988; Francis, 1988; Watters, 1993; Schultz and Tanaka, 1994), from magmatic-driven uplifts, such as at Syria Planum (Tanaka and Davis, 1988; Dohm and others, 1998; Dohm and Tanaka, 1999) and central Valles Marineris (Dohm and others, 1998, Dohm and Tanaka, 1999), and from the Argyre impact (Wilhelms, 1973; Scott and Tanaka, 1986). In addition, volcanic, eolian, and fluvial processes have highly modified older surfaces in the map region. Local volcanic and tectonic activity often accompanied episodes of valley formation. Our mapping depicts and describes the diverse terrains and complex geologic history of this unique ancient tectonic region of Mars. The geologic (sheet 1), paleotectonic (sheet 2), and paleoerosional (sheet 3) maps of the Thaumasia region were compiled on a Viking 1:5,000,000-scale digital photomosaic base. The base is a combination of four quadrangles: the southeast part of Phoenicis Lacus (MC–17), most of the southern half of Coprates (MC–18), a large part of Thaumasia (MC–25), and the northwest margin of Argyre (MC–26). The medium-resolution Viking images used for mapping and base preparation also formed the basis of the 1:2,000,000 scale subquadrangle series. Earlier geologic maps of all or parts of the region include: (1) maps of the Phoenicis Lacus, Coprates, Thaumasia, and Argyre quadrangles at 1:5,000,000 scale based mainly on Mariner 9 images (respectively, Masursky and others, 1978; McCauley, 1978; McGill, 1978; and Hodges, 1980), (2) the global map of Mars at 1:25,000,000 (Scott and Carr, 1978) compiled largely from the 1:5,000,000 scale geologic maps, (3) maps showing lava flows in the Tharsis region at 1:2,000,000 scale compiled from Viking and Mariner 9 images (Scott, 1981; Scott and Tanaka, 1981a, b; Scott and others, 1981), (4) the map of the western equatorial region of Mars at 1:15,000,000 scale based on Viking images (Scott and Tanaka, 1986), and (5) the map of the Valles Marineris region at 1:2,000,000 scale compiled from Viking images (Witbeck and others, 1991). The previous maps have described the overall geology and geomorphology of the region but have not unraveled the detailed stratigraphy and complex evolution of this unique and geologically diverse martian province. The main purpose of this comprehensive mapping project is to reconstruct the stratigraphic, structural, and erosional histories of the Thaumasia region. The region is the last major province of the Tharsis region to undergo detailed structural mapping using Viking images; its history is essential to documenting the overall tectonic history of Tharsis. Other provinces of Tharsis that have been structurally mapped include Syria Planum (Tanaka and Davis, 1988), Tempe Terra and Ulysses Patera (Scott and Dohm, 1990b), and Alba Patera (Tanaka, 1990). Another primary mapping objective is to determine the region's volcanic history and assess the relations among fault systems and volcanoes (Wise and others, 1979; Scott and Tanaka, 1980; Whitford-Stark, 1982; Scott and Dohm, 1990a). A secondary mapping objective is to determine the distribution and ages of valleys. In our study, we incorporated detailed photogeologic mapping, comprehensive crater statistics (table 1), and geologic, paleotectonic, and paleoerosional Geographic Information System (GIS) databases. Sheets 1–3 show geologic units, faults and other significant structures, and valleys, respectively. To help unravel the complex geologic history of the Thaumasia region, we transferred the highly detailed geologic unit, paleotectonic, and paleoerosional information of sheets 1–3 into a multilayered GIS database for comparative analysis. The geologic information was transferred from hard copy into a digital format by scanning at 25 micron resolution on a drum scanner. The 2-bit scanned image was then converted to an x,y coordinate system using ARC/INFO's vectorization routine. The geologic unit, structural, and erosional data were transformed into the original map projection, Lambert Conformal. The average transformation root mean square error was 0.25 km (acceptable for the Thaumasia map base at 1:5,000,000 scale). After transformation, the features were properly attributed and tediously checked. Once digitized, the map data can be transformed into any map projection depending on the type of data analysis. For example, the equal-area sinusoidal projection was used for determining the precise area of geologic units (table 1). In addition to the geologic map and its attendant stratigraphic section, correlation chart, and description of map units, we include text sections that clarify the histories and temporal, spatial, and causal relations of the various geologic units and landforms of the Thaumasia region. The geologic summary section defines the sequence of major geologic events.

Serial turbo trellis coded modulation using a serially concatenated coder

NASA Technical Reports Server (NTRS)

Divsalar, Dariush (Inventor); Dolinar, Samuel J. (Inventor); Pollara, Fabrizio (Inventor)

2010-01-01

Serial concatenated trellis coded modulation (SCTCM) includes an outer coder, an interleaver, a recursive inner coder and a mapping element. The outer coder receives data to be coded and produces outer coded data. The interleaver permutes the outer coded data to produce interleaved data. The recursive inner coder codes the interleaved data to produce inner coded data. The mapping element maps the inner coded data to a symbol. The recursive inner coder has a structure which facilitates iterative decoding of the symbols at a decoder system. The recursive inner coder and the mapping element are selected to maximize the effective free Euclidean distance of a trellis coded modulator formed from the recursive inner coder and the mapping element. The decoder system includes a demodulation unit, an inner SISO (soft-input soft-output) decoder, a deinterleaver, an outer SISO decoder, and an interleaver.

The design and implementation of postprocessing for depth map on real-time extraction system.

PubMed

Tang, Zhiwei; Li, Bin; Li, Huosheng; Xu, Zheng

2014-01-01

Depth estimation becomes the key technology to resolve the communications of the stereo vision. We can get the real-time depth map based on hardware, which cannot implement complicated algorithm as software, because there are some restrictions in the hardware structure. Eventually, some wrong stereo matching will inevitably exist in the process of depth estimation by hardware, such as FPGA. In order to solve the problem a postprocessing function is designed in this paper. After matching cost unique test, the both left-right and right-left consistency check solutions are implemented, respectively; then, the cavities in depth maps can be filled by right depth values on the basis of right-left consistency check solution. The results in the experiments have shown that the depth map extraction and postprocessing function can be implemented in real time in the same system; what is more, the quality of the depth maps is satisfactory.

Magnetic mapping around Les Saintes islands (Lesser Antilles, Guadeloupe) for structural interpretation

NASA Astrophysics Data System (ADS)

Mercier de Lépinay, J.; Munschy, M.; Géraud, Y.; Diraison, M.; Navelot, V.; Verati, C.; Corsini, M.; Lardeaux, J. M.

2016-12-01

In Les Saintes archipelago, the outcrop analysis of Terre-de-Haut island allows to point out several fault systems and geological objects such as lava domes and lava flows. Moreover an exhumed geothermal paleo-system was identified and is thought to be an interesting analogue of the active geothermal system of Bouillante, Guadeloupe. To fully understand this area, the offshore continuation of the geological features is a major concern. The previously known onshore features are visible on airborne magnetic maps due to the highly magnetized material in Les Saintes archipelago. Moreover hydrothermal processes alter the magnetized minerals of volcanic rocks, creating a significant variation in the magnetic measurements. Therefore an adapted marine magnetic study can help the geological understanding of this particular area. In order to correctly link the offshore and onshore structures, the magnetic survey must be close enough to the shoreline and detailed enough so as to correctly outline the tectonic structures. An appropriate solution for such a survey was to use a magnetometer aboard a speedboat. Such a boat allows more navigation flexibility than a classic oceanic vessel towing a magnetometer; it can sail at higher speed on calm seas and closer to the shoreline. This kind of set up is only viable because the magnetic effect of the ship can be compensated using the same algorithms than those used for airborne magnetometry. Studies were implemented through the GEOTREF program which benefits from the support of both the ADEME and the French public funds "Investments for the future". The use of magnetic field transformations allows a large variety of structures to be highlighted, providing insights that help to build a general understanding of the nature and distribution of the magnetic sources. Using a reduction to the pole map operator we are able to prolong the volcanic structures at sea. The marine part of the paleo-geothermal system extension is also roughly delineated. Linear geological features like fault systems tend to be well revealed by the tilt angle operator. With this map transformation, the main known faults of Terre-de-Haut can be prolonged at sea. Moreover, the general directions of magnetic outlines (major and minor) are in agreement with the directions of geological structures of this area.

A computational linguistics motivated mapping of ICPC-2 PLUS to SNOMED CT.

PubMed

Wang, Yefeng; Patrick, Jon; Miller, Graeme; O'Hallaran, Julie

2008-10-27

A great challenge in sharing data across information systems in general practice is the lack of interoperability between different terminologies or coding schema used in the information systems. Mapping of medical vocabularies to a standardised terminology is needed to solve data interoperability problems. We present a system to automatically map an interface terminology ICPC-2 PLUS to SNOMED CT. Three steps of mapping are proposed in this system. The UMLS metathesaurus mapping utilises explicit relationships between ICPC-2 PLUS and SNOMED CT terms in the UMLS library to perform the first stage of the mapping. Computational linguistic mapping uses natural language processing techniques and lexical similarities for the second stage of mapping between terminologies. Finally, the post-coordination mapping allows one ICPC-2 PLUS term to be mapped into an aggregation of two or more SNOMED CT terms. A total 5,971 of all 7,410 ICPC-2 terms (80.58%) were mapped to SNOMED CT using the three stages but with different levels of accuracy. UMLS mapping achieved the mapping of 53.0% ICPC2 PLUS terms to SNOMED CT with the precision rate of 96.46% and overall recall rate of 44.89%. Lexical mapping increased the result to 60.31% and post-coordination mapping gave an increase of 20.27% in mapped terms. A manual review of a part of the mapping shows that the precision of lexical mappings is around 90%. The accuracy of post-coordination has not been evaluated yet. Unmapped terms and mismatched terms are due to the differences in the structures between ICPC-2 PLUS and SNOMED CT. Terms contained in ICPC-2 PLUS but not in SNOMED CT caused a large proportion of the failures in the mappings. Mapping terminologies to a standard vocabulary is a way to facilitate consistent medical data exchange and achieve system interoperability and data standardisation. Broad scale mapping cannot be achieved by any single method and methods based on computational linguistics can be very useful for the task. Automating as much as is possible of this process turns the searching and mapping task into a validation task, which can effectively reduce the cost and increase the efficiency and accuracy of this task over manual methods.

Growing a hypercubical output space in a self-organizing feature map.

PubMed

Bauer, H U; Villmann, T

1997-01-01

Neural maps project data from an input space onto a neuron position in a (often lower dimensional) output space grid in a neighborhood preserving way, with neighboring neurons in the output space responding to neighboring data points in the input space. A map-learning algorithm can achieve an optimal neighborhood preservation only, if the output space topology roughly matches the effective structure of the data in the input space. We here present a growth algorithm, called the GSOM or growing self-organizing map, which enhances a widespread map self-organization process, Kohonen's self-organizing feature map (SOFM), by an adaptation of the output space grid during learning. The GSOM restricts the output space structure to the shape of a general hypercubical shape, with the overall dimensionality of the grid and its extensions along the different directions being subject of the adaptation. This constraint meets the demands of many larger information processing systems, of which the neural map can be a part. We apply our GSOM-algorithm to three examples, two of which involve real world data. Using recently developed methods for measuring the degree of neighborhood preservation in neural maps, we find the GSOM-algorithm to produce maps which preserve neighborhoods in a nearly optimal fashion.

Linear maps preserving maximal deviation and the Jordan structure of quantum systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hamhalter, Jan

2012-12-15

In the algebraic approach to quantum theory, a quantum observable is given by an element of a Jordan algebra and a state of the system is modelled by a normalized positive functional on the underlying algebra. Maximal deviation of a quantum observable is the largest statistical deviation one can obtain in a particular state of the system. The main result of the paper shows that each linear bijective transformation between JBW algebras preserving maximal deviations is formed by a Jordan isomorphism or a minus Jordan isomorphism perturbed by a linear functional multiple of an identity. It shows that only onemore » numerical statistical characteristic has the power to determine the Jordan algebraic structure completely. As a consequence, we obtain that only very special maps can preserve the diameter of the spectra of elements. Nonlinear maps preserving the pseudometric given by maximal deviation are also described. The results generalize hitherto known theorems on preservers of maximal deviation in the case of self-adjoint parts of von Neumann algebras proved by Molnar.« less

Chapter 6 - Developing the LANDFIRE Vegetation and Biophysical Settings Map Unit Classifications for the LANDFIRE Prototype Project

Treesearch

Jennifer L. Long; Melanie Miller; James P. Menakis; Robert E. Keane

2006-01-01

The Landscape Fire and Resource Management Planning Tools Prototype Project, or LANDFIRE Prototype Project, required a system for classifying vegetation composition, biophysical settings, and vegetation structure to facilitate the mapping of vegetation and wildland fuel characteristics and the simulation of vegetation dynamics using landscape modeling. We developed...

Hierarchical structure in sharply divided phase space for the piecewise linear map

NASA Astrophysics Data System (ADS)

Akaishi, Akira; Aoki, Kazuki; Shudo, Akira

2017-05-01

We have studied a two-dimensional piecewise linear map to examine how the hierarchical structure of stable regions affects the slow dynamics in Hamiltonian systems. In the phase space there are infinitely many stable regions, each of which is polygonal-shaped, and the rest is occupied by chaotic orbits. By using symbolic representation of stable regions, a procedure to compute the edges of the polygons is presented. The stable regions are hierarchically distributed in phase space and the edges of the stable regions show the marginal instability. The cumulative distribution of the recurrence time obeys a power law as ˜t-2 , the same as the one for the system with phase space, which is composed of a single stable region and chaotic components. By studying the symbol sequence of recurrence trajectories, we show that the hierarchical structure of stable regions has no significant effect on the power-law exponent and that only the marginal instability on the boundary of stable regions is responsible for determining the exponent. We also discuss the relevance of the hierarchical structure to those in more generic chaotic systems.

Synchronization invariance under network structural transformations

NASA Astrophysics Data System (ADS)

Arola-Fernández, Lluís; Díaz-Guilera, Albert; Arenas, Alex

2018-06-01

Synchronization processes are ubiquitous despite the many connectivity patterns that complex systems can show. Usually, the emergence of synchrony is a macroscopic observable; however, the microscopic details of the system, as, e.g., the underlying network of interactions, is many times partially or totally unknown. We already know that different interaction structures can give rise to a common functionality, understood as a common macroscopic observable. Building upon this fact, here we propose network transformations that keep the collective behavior of a large system of Kuramoto oscillators invariant. We derive a method based on information theory principles, that allows us to adjust the weights of the structural interactions to map random homogeneous in-degree networks into random heterogeneous networks and vice versa, keeping synchronization values invariant. The results of the proposed transformations reveal an interesting principle; heterogeneous networks can be mapped to homogeneous ones with local information, but the reverse process needs to exploit higher-order information. The formalism provides analytical insight to tackle real complex scenarios when dealing with uncertainty in the measurements of the underlying connectivity structure.

Motivation, emotion regulation, and the latent structure of psychopathology: An integrative and convergent historical perspective.

PubMed

Beauchaine, Theodore P; Zisner, Aimee

2017-09-01

Motivational models of psychopathology have long been advanced by psychophysiologists, and have provided key insights into neurobiological mechanisms of a wide range of psychiatric disorders. These accounts emphasize individual differences in activity and reactivity of bottom-up, subcortical neural systems of approach and avoidance in affecting behavior. Largely independent literatures emphasize the roles of top-down, cortical deficits in emotion regulation and executive function in conferring vulnerability to psychopathology. To date however, few models effectively integrate functions performed by bottom-up emotion generation system with those performed by top-down emotion regulation systems in accounting for alternative expressions of psychopathology. In this article, we present such a model, and describe how it accommodates the well replicated bifactor structure of psychopathology. We describe how excessive approach motivation maps directly into externalizing liability, how excessive passive avoidance motivation maps directly into internalizing liability, and how emotion dysregulation and executive function map onto general liability. This approach is consistent with the Research Domain Criteria initiative, which assumes that a limited number of brain systems interact to confer vulnerability to many if not most forms of psychopathology. Copyright © 2017 Elsevier B.V. All rights reserved.

Venus Quadrangle Geological Mapping: Use of Geoscience Data Visualization Systems in Mapping and Training

NASA Technical Reports Server (NTRS)

Head, James W.; Huffman, J. N.; Forsberg, A. S.; Hurwitz, D. M.; Basilevsky, A. T.; Ivanov, M. A.; Dickson, J. L.; Kumar, P. Senthil

2008-01-01

We are currently investigating new technological developments in computer visualization and analysis in order to assess their importance and utility in planetary geological analysis and mapping [1,2]. Last year we reported on the range of technologies available and on our application of these to various problems in planetary mapping [3]. In this contribution we focus on the application of these techniques and tools to Venus geological mapping at the 1:5M quadrangle scale. In our current Venus mapping projects we have utilized and tested the various platforms to understand their capabilities and assess their usefulness in defining units, establishing stratigraphic relationships, mapping structures, reaching consensus on interpretations and producing map products. We are specifically assessing how computer visualization display qualities (e.g., level of immersion, stereoscopic vs. monoscopic viewing, field of view, large vs. small display size, etc.) influence performance on scientific analysis and geological mapping. We have been exploring four different environments: 1) conventional desktops (DT), 2) semi-immersive Fishtank VR (FT) (i.e., a conventional desktop with head-tracked stereo and 6DOF input), 3) tiled wall displays (TW), and 4) fully immersive virtual reality (IVR) (e.g., "Cave Automatic Virtual Environment," or Cave system). Formal studies demonstrate that fully immersive Cave environments are superior to desktop systems for many tasks [e.g., 4].

Photogrammetrically Measured Distortions of Composite Structure Microwave Reflectors at -90K

NASA Technical Reports Server (NTRS)

Mule, Peter; Hill, Michael D.; Sampler, Henry P.

2000-01-01

The Microwave Anisotropy Probe (MAP) Observatory, scheduled for a late 2000 launch, is designed to measure temperature fluctuations (anisotropy) and produce a high sensitivity and high spatial resolution (better than 0.3 deg. at 90 GHz.) map of the Cosmic Microwave Background (CMB) radiation over the entire sky between 22 and 90 GHz. MAP utilizes back-to-back composite Gregorian telescopes supported on a composite truss structure to focus the microwave signals into 10 differential microwave receivers. Proper position and shape of the telescope reflectors at the operating temperature of -90 K is a critical element to ensure mission success. We describe the methods and analysis used to validate the in-flight position and shape predictions for the reflectors based on photogrammetric metrology data taken under vacuum with the reflectors at -90 K. Contour maps showing reflector distortion were generated. The resulting reflector distortion data are shown to be crucial to the analytical assessment of the MAP instrument's microwave system in-flight performance.

Photogrammetrically Measured Distortions of Composite Structure Microwave Reflectors at Approximately 90 K

NASA Technical Reports Server (NTRS)

Mule, Peter; Hill, Michael D.; Sampler, Henry P.

2000-01-01

The Microwave Anisotropy Probe (MAP) Observatory, scheduled for a fall 2000 launch, is designed to measure temperature fluctuations (anisotropy) and produce a high sensitivity and high spatial resolution (better than 0.3 deg.) map of the cosmic microwave background (CMB) radiation over the entire sky between 22 and 90 GHz. MAP utilizes back-to-back composite Gregorian telescopes supported on a composite truss structure to focus the microwave signals into 10 differential microwave receivers. Proper position and shape of the telescope reflectors at the operating temperature of approximately 90 K is a critical element to ensuring mission success. We describe the methods and analysis used to validate the in-flight position and shape predictions for the reflectors based on photogrammetric (PG) metrology data taken under vacuum with the reflectors at approximately 90 K. Contour maps showing reflector distortion analytical extrapolations were generated. The resulting reflector distortion data are shown to be crucial to the analytical assessment of the MAP instrument's microwave system in-flight performance.

Improved pose and affinity predictions using different protocols tailored on the basis of data availability

NASA Astrophysics Data System (ADS)

Prathipati, Philip; Nagao, Chioko; Ahmad, Shandar; Mizuguchi, Kenji

2016-09-01

The D3R 2015 grand drug design challenge provided a set of blinded challenges for evaluating the applicability of our protocols for pose and affinity prediction. In the present study, we report the application of two different strategies for the two D3R protein targets HSP90 and MAP4K4. HSP90 is a well-studied target system with numerous co-crystal structures and SAR data. Furthermore the D3R HSP90 test compounds showed high structural similarity to existing HSP90 inhibitors in BindingDB. Thus, we adopted an integrated docking and scoring approach involving a combination of both pharmacophoric and heavy atom similarity alignments, local minimization and quantitative structure activity relationships modeling, resulting in the reasonable prediction of pose [with the root mean square deviation (RMSD) values of 1.75 Å for mean pose 1, 1.417 Å for the mean best pose and 1.85 Å for the mean all poses] and affinity (ROC AUC = 0.702 at 7.5 pIC50 cut-off and R = 0.45 for 180 compounds). The second protein, MAP4K4, represents a novel system with limited SAR and co-crystal structure data and little structural similarity of the D3R MAP4K4 test compounds to known MAP4K4 ligands. For this system, we implemented an exhaustive pose and affinity prediction protocol involving docking and scoring using the PLANTS software which considers side chain flexibility together with protein-ligand fingerprints analysis assisting in pose prioritization. This protocol through fares poorly in pose prediction (with the RMSD values of 4.346 Å for mean pose 1, 4.69 Å for mean best pose and 4.75 Å for mean all poses) and produced reasonable affinity prediction (AUC = 0.728 at 7.5 pIC50 cut-off and R = 0.67 for 18 compounds, ranked 1st among 80 submissions).

Fuzzy cognitive maps for issue identification in a water resources conflict resolution system

NASA Astrophysics Data System (ADS)

Giordano, R.; Passarella, G.; Uricchio, V. F.; Vurro, M.

In water management, conflicts of interests are inevitable due to the variety in quality demands and the number of stakeholders, which are affected in different ways by decisions concerning the use of the resources. Ignoring the differences among interests involved in water resources management and not resolving the emerging conflicts could lead to controversial strategies. In such cases, proposed solutions could generate strong opposition, making these solutions unfeasible. In our contribution, a Community Decision Support System is proposed. Such a system is able to support discussion and collaboration. The system helps participants to structure their problem, to help them learn about possible alternatives, their constraints and implications and to support the participants in the specification of their own preferences. More in detail, the proposed system helps each user in representing and communicating problem perspectives. To reach this aim, cognitive maps are used to capture parts of the stakeholders’ point of view and to enhance negotiation among individuals and organizations. The aim of the negotiation process is to define a shared cognitive map with regard to water management problems. Such a map can be called a water community cognitive map. The system performance has been tested by simulating a real conflict on water resources management that occurred some years ago in a river basin in the south of Italy.

High-resolution charge carrier mobility mapping of heterogeneous organic semiconductors

NASA Astrophysics Data System (ADS)

Button, Steven W.; Mativetsky, Jeffrey M.

2017-08-01

Organic electronic device performance is contingent on charge transport across a heterogeneous landscape of structural features. Methods are therefore needed to unravel the effects of local structure on overall electrical performance. Using conductive atomic force microscopy, we construct high-resolution out-of-plane hole mobility maps from arrays of 5000 to 16 000 current-voltage curves. To demonstrate the efficacy of this non-invasive approach for quantifying and mapping local differences in electrical performance due to structural heterogeneities, we investigate two thin film test systems, one bearing a heterogeneous crystal structure [solvent vapor annealed 5,11-Bis(triethylsilylethynyl)anthradithiophene (TES-ADT)—a small molecule organic semiconductor] and one bearing a heterogeneous chemical composition [p-DTS(FBTTh2)2:PC71BM—a high-performance organic photovoltaic active layer]. TES-ADT shows nearly an order of magnitude difference in hole mobility between semicrystalline and crystalline areas, along with a distinct boundary between the two regions, while p-DTS(FBTTh2)2:PC71BM exhibits subtle local variations in hole mobility and a nanoscale domain structure with features below 10 nm in size. We also demonstrate mapping of the built-in potential, which plays a significant role in organic light emitting diode and organic solar cell operation.

REX3DV1.0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holm, Elizabeth A.

2002-03-28

This code is a FORTRAN code for three-dimensional Monte Carol Potts Model (MCPM) Recrystallization and grain growth. A continuum grain structure is mapped onto a three-dimensional lattice. The mapping procedure is analogous to color bitmapping the grain structure; grains are clusters of pixels (sites) of the same color (spin). The total system energy is given by the Pott Hamiltonian and the kinetics of grain growth are determined through a Monte Carlo technique with a nonconserved order parameter (Glauber dynamics). The code can be compiled and run on UNIX/Linux platforms.

A Simple Hierarchical Pooling Data Structure for Loop Closure

DTIC Science & Technology

2016-10-16

ticated agglomerative schemes at a fraction of the effort. 1.1 Related work Loop closure is a key component in robotic mapping (SLAM) [37], autonomous...appearance-only slam-fab-map 2.0. In: Robotics : Science and Systems. vol. 5. Seattle, USA (2009) 7. Dong, J., Soatto, S.: Domain size pooling in local...detection with bags of binary words. In: Intelligent Robots and Systems (IROS), 2011 IEEE/RSJ Intl. Conf. on. pp. 51–58. IEEE (2011) 9. Geiger, A

Interferometric Mapping of Perseus Outflows with MASSES

NASA Astrophysics Data System (ADS)

Stephens, Ian; Dunham, Michael; Myers, Philip C.; MASSES Team

2017-01-01

The MASSES (Mass Assembly of Stellar Systems and their Evolution with the SMA) survey, a Submillimeter Array (SMA) large-scale program, is mapping molecular lines and continuum emission about the 75 known Class 0/I sources in the Perseus Molecular Cloud. In this talk, I present some of the key results of this project, with a focus on the CO(2-1) maps of the molecular outflows. In particular, I investigate how protostars inherit their rotation axes from large-scale magnetic fields and filamentary structure.

MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT

PubMed Central

Zhang, Guo-Qiang; Zhu, Wei; Sun, Mengmeng; Tao, Shiqiang; Bodenreider, Olivier; Cui, Licong

2015-01-01

Non-lattice fragments are often indicative of structural anomalies in ontological systems and, as such, represent possible areas of focus for subsequent quality assurance work. However, extracting the non-lattice fragments in large ontological systems is computationally expensive if not prohibitive, using a traditional sequential approach. In this paper we present a general MapReduce pipeline, called MaPLE (MapReduce Pipeline for Lattice-based Evaluation), for extracting non-lattice fragments in large partially ordered sets and demonstrate its applicability in ontology quality assurance. Using MaPLE in a 30-node Hadoop local cloud, we systematically extracted non-lattice fragments in 8 SNOMED CT versions from 2009 to 2014 (each containing over 300k concepts), with an average total computing time of less than 3 hours per version. With dramatically reduced time, MaPLE makes it feasible not only to perform exhaustive structural analysis of large ontological hierarchies, but also to systematically track structural changes between versions. Our change analysis showed that the average change rates on the non-lattice pairs are up to 38.6 times higher than the change rates of the background structure (concept nodes). This demonstrates that fragments around non-lattice pairs exhibit significantly higher rates of change in the process of ontological evolution. PMID:25705725

MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and Its Application to SNOMED CT.

PubMed

Zhang, Guo-Qiang; Zhu, Wei; Sun, Mengmeng; Tao, Shiqiang; Bodenreider, Olivier; Cui, Licong

2014-10-01

Non-lattice fragments are often indicative of structural anomalies in ontological systems and, as such, represent possible areas of focus for subsequent quality assurance work. However, extracting the non-lattice fragments in large ontological systems is computationally expensive if not prohibitive, using a traditional sequential approach. In this paper we present a general MapReduce pipeline, called MaPLE (MapReduce Pipeline for Lattice-based Evaluation), for extracting non-lattice fragments in large partially ordered sets and demonstrate its applicability in ontology quality assurance. Using MaPLE in a 30-node Hadoop local cloud, we systematically extracted non-lattice fragments in 8 SNOMED CT versions from 2009 to 2014 (each containing over 300k concepts), with an average total computing time of less than 3 hours per version. With dramatically reduced time, MaPLE makes it feasible not only to perform exhaustive structural analysis of large ontological hierarchies, but also to systematically track structural changes between versions. Our change analysis showed that the average change rates on the non-lattice pairs are up to 38.6 times higher than the change rates of the background structure (concept nodes). This demonstrates that fragments around non-lattice pairs exhibit significantly higher rates of change in the process of ontological evolution.

Networks of open systems

NASA Astrophysics Data System (ADS)

Lerman, Eugene

2018-08-01

Many systems of interest in science and engineering are made up of interacting subsystems. These subsystems, in turn, could be made up of collections of smaller interacting subsystems and so on. In a series of papers David Spivak with collaborators formalized these kinds of structures (systems of systems) as algebras over presentable colored operads (Spivak, 2013; Rupel and Spivak, 2013; Vagner et al., 2015). It is also very useful to consider maps between dynamical systems. This is the point of view taken by DeVille and Lerman in the study of dynamics on networks (DeVille and Lerman, 2015 [4,5]; DeVille and Lerman, 2010). The work of DeVille and Lerman was inspired by the coupled cell networks of Golubitsky, Stewart and their collaborators (Stewart et al., 2003; Golubitsky et al., 2005; Golubitsky and Stewart, 2006). The goal of this paper is to describe an algebraic structure that encompasses both approaches to systems of systems. More specifically we define a double category of open systems and construct a functor from this double category to the double category of vector spaces, linear maps and linear relations. This allows us, on one hand, to build new open systems out of collections of smaller open subsystems and on the other to keep track of maps between open systems. Consequently we obtain synchrony results for open systems which generalize the synchrony results of Golubitsky, Stewart and their collaborators for groupoid invariant vector fields on coupled cell networks.

Imaging and elemental mapping of biological specimens with a dual-EDS dedicated scanning transmission electron microscope

PubMed Central

Wu, J.S.; Kim, A. M.; Bleher, R.; Myers, B.D.; Marvin, R. G.; Inada, H.; Nakamura, K.; Zhang, X.F.; Roth, E.; Li, S.Y.; Woodruff, T. K.; O'Halloran, T. V.; Dravid, Vinayak P.

2013-01-01

A dedicated analytical scanning transmission electron microscope (STEM) with dual energy dispersive spectroscopy (EDS) detectors has been designed for complementary high performance imaging as well as high sensitivity elemental analysis and mapping of biological structures. The performance of this new design, based on a Hitachi HD-2300A model, was evaluated using a variety of biological specimens. With three imaging detectors, both the surface and internal structure of cells can be examined simultaneously. The whole-cell elemental mapping, especially of heavier metal species that have low cross-section for electron energy loss spectroscopy (EELS), can be faithfully obtained. Optimization of STEM imaging conditions is applied to thick sections as well as thin sections of biological cells under low-dose conditions at room- and cryogenic temperatures. Such multimodal capabilities applied to soft/biological structures usher a new era for analytical studies in biological systems. PMID:23500508

Prediction of enzymatic pathways by integrative pathway mapping

PubMed Central

Wichelecki, Daniel J; San Francisco, Brian; Zhao, Suwen; Rodionov, Dmitry A; Vetting, Matthew W; Al-Obaidi, Nawar F; Lin, Henry; O'Meara, Matthew J; Scott, David A; Morris, John H; Russel, Daniel; Almo, Steven C; Osterman, Andrei L

2018-01-01

The functions of most proteins are yet to be determined. The function of an enzyme is often defined by its interacting partners, including its substrate and product, and its role in larger metabolic networks. Here, we describe a computational method that predicts the functions of orphan enzymes by organizing them into a linear metabolic pathway. Given candidate enzyme and metabolite pathway members, this aim is achieved by finding those pathways that satisfy structural and network restraints implied by varied input information, including that from virtual screening, chemoinformatics, genomic context analysis, and ligand -binding experiments. We demonstrate this integrative pathway mapping method by predicting the L-gulonate catabolic pathway in Haemophilus influenzae Rd KW20. The prediction was subsequently validated experimentally by enzymology, crystallography, and metabolomics. Integrative pathway mapping by satisfaction of structural and network restraints is extensible to molecular networks in general and thus formally bridges the gap between structural biology and systems biology. PMID:29377793

Robust Parallel Motion Estimation and Mapping with Stereo Cameras in Underground Infrastructure

NASA Astrophysics Data System (ADS)

Liu, Chun; Li, Zhengning; Zhou, Yuan

2016-06-01

Presently, we developed a novel robust motion estimation method for localization and mapping in underground infrastructure using a pre-calibrated rigid stereo camera rig. Localization and mapping in underground infrastructure is important to safety. Yet it's also nontrivial since most underground infrastructures have poor lighting condition and featureless structure. Overcoming these difficulties, we discovered that parallel system is more efficient than the EKF-based SLAM approach since parallel system divides motion estimation and 3D mapping tasks into separate threads, eliminating data-association problem which is quite an issue in SLAM. Moreover, the motion estimation thread takes the advantage of state-of-art robust visual odometry algorithm which is highly functional under low illumination and provides accurate pose information. We designed and built an unmanned vehicle and used the vehicle to collect a dataset in an underground garage. The parallel system was evaluated by the actual dataset. Motion estimation results indicated a relative position error of 0.3%, and 3D mapping results showed a mean position error of 13cm. Off-line process reduced position error to 2cm. Performance evaluation by actual dataset showed that our system is capable of robust motion estimation and accurate 3D mapping in poor illumination and featureless underground environment.

Mapping forest canopy gaps using air-photo interpretation and ground surveys

USGS Publications Warehouse

Fox, T.J.; Knutson, M.G.; Hines, R.K.

2000-01-01

Canopy gaps are important structural components of forested habitats for many wildlife species. Recent improvements in the spatial accuracy of geographic information system tools facilitate accurate mapping of small canopy features such as gaps. We compared canopy-gap maps generated using ground survey methods with those derived from air-photo interpretation. We found that maps created from high-resolution air photos were more accurate than those created from ground surveys. Errors of omission were 25.6% for the ground-survey method and 4.7% for the air-photo method. One variable of inter est in songbird research is the distance from nests to gap edges. Distances from real and simulated nests to gap edges were longer using the ground-survey maps versus the air-photo maps, indicating that gap omission could potentially bias the assessment of spatial relationships. If research or management goals require location and size of canopy gaps and specific information about vegetation structure, we recommend a 2-fold approach. First, canopy gaps can be located and the perimeters defined using 1:15,000-scale or larger aerial photographs and the methods we describe. Mapped gaps can then be field-surveyed to obtain detailed vegetation data.

Robust Stabilization Control Based on Guardian Maps Theory for a Longitudinal Model of Hypersonic Vehicle

PubMed Central

Liu, Mengying; Sun, Peihua

2014-01-01

A typical model of hypersonic vehicle has the complicated dynamics such as the unstable states, the nonminimum phases, and the strong coupling input-output relations. As a result, designing a robust stabilization controller is essential to implement the anticipated tasks. This paper presents a robust stabilization controller based on the guardian maps theory for hypersonic vehicle. First, the guardian maps theories are provided to explain the constraint relations between the open subsets of complex plane and the eigenvalues of the state matrix of closed-loop control system. Then, a general control structure in relation to the guardian maps theories is proposed to achieve the respected design demands. Furthermore, the robust stabilization control law depending on the given general control structure is designed for the longitudinal model of hypersonic vehicle. Finally, a simulation example is provided to verify the effectiveness of the proposed methods. PMID:24795535

Robust stabilization control based on guardian maps theory for a longitudinal model of hypersonic vehicle.

PubMed

Liu, Yanbin; Liu, Mengying; Sun, Peihua

2014-01-01

A typical model of hypersonic vehicle has the complicated dynamics such as the unstable states, the nonminimum phases, and the strong coupling input-output relations. As a result, designing a robust stabilization controller is essential to implement the anticipated tasks. This paper presents a robust stabilization controller based on the guardian maps theory for hypersonic vehicle. First, the guardian maps theories are provided to explain the constraint relations between the open subsets of complex plane and the eigenvalues of the state matrix of closed-loop control system. Then, a general control structure in relation to the guardian maps theories is proposed to achieve the respected design demands. Furthermore, the robust stabilization control law depending on the given general control structure is designed for the longitudinal model of hypersonic vehicle. Finally, a simulation example is provided to verify the effectiveness of the proposed methods.

Structured light system calibration method with optimal fringe angle.

PubMed

Li, Beiwen; Zhang, Song

2014-11-20

For structured light system calibration, one popular approach is to treat the projector as an inverse camera. This is usually performed by projecting horizontal and vertical sequences of patterns to establish one-to-one mapping between camera points and projector points. However, for a well-designed system, either horizontal or vertical fringe images are not sensitive to depth variation and thus yield inaccurate mapping. As a result, the calibration accuracy is jeopardized if a conventional calibration method is used. To address this limitation, this paper proposes a novel calibration method based on optimal fringe angle determination. Experiments demonstrate that our calibration approach can increase the measurement accuracy up to 38% compared to the conventional calibration method with a calibration volume of 300(H)  mm×250(W)  mm×500(D)  mm.

The Importance of Temporal and Spatial Vegetation Structure Information in Biotope Mapping Schemes: A Case Study in Helsingborg, Sweden

NASA Astrophysics Data System (ADS)

Gao, Tian; Qiu, Ling; Hammer, Mårten; Gunnarsson, Allan

2012-02-01

Temporal and spatial vegetation structure has impact on biodiversity qualities. Yet, current schemes of biotope mapping do only to a limited extend incorporate these factors in the mapping. The purpose of this study is to evaluate the application of a modified biotope mapping scheme that includes temporal and spatial vegetation structure. A refined scheme was developed based on a biotope classification, and applied to a green structure system in Helsingborg city in southern Sweden. It includes four parameters of vegetation structure: continuity of forest cover, age of dominant trees, horizontal structure, and vertical structure. The major green structure sites were determined by interpretation of panchromatic aerial photographs assisted with a field survey. A set of biotope maps was constructed on the basis of each level of modified classification. An evaluation of the scheme included two aspects in particular: comparison of species richness between long-continuity and short-continuity forests based on identification of woodland continuity using ancient woodland indicators (AWI) species and related historical documents, and spatial distribution of animals in the green space in relation to vegetation structure. The results indicate that (1) the relationship between forest continuity: according to verification of historical documents, the richness of AWI species was higher in long-continuity forests; Simpson's diversity was significantly different between long- and short-continuity forests; the total species richness and Shannon's diversity were much higher in long-continuity forests shown a very significant difference. (2) The spatial vegetation structure and age of stands influence the richness and abundance of the avian fauna and rabbits, and distance to the nearest tree and shrub was a strong determinant of presence for these animal groups. It is concluded that continuity of forest cover, age of dominant trees, horizontal and vertical structures of vegetation should now be included in urban biotope classifications.

Extending systems thinking in planning and evaluation using group concept mapping and system dynamics to tackle complex problems.

PubMed

Hassmiller Lich, Kristen; Urban, Jennifer Brown; Frerichs, Leah; Dave, Gaurav

2017-02-01

Group concept mapping (GCM) has been successfully employed in program planning and evaluation for over 25 years. The broader set of systems thinking methodologies (of which GCM is one), have only recently found their way into the field. We present an overview of systems thinking emerging from a system dynamics (SD) perspective, and illustrate the potential synergy between GCM and SD. As with GCM, participatory processes are frequently employed when building SD models; however, it can be challenging to engage a large and diverse group of stakeholders in the iterative cycles of divergent thinking and consensus building required, while maintaining a broad perspective on the issue being studied. GCM provides a compelling resource for overcoming this challenge, by richly engaging a diverse set of stakeholders in broad exploration, structuring, and prioritization. SD provides an opportunity to extend GCM findings by embedding constructs in a testable hypothesis (SD model) describing how system structure and changes in constructs affect outcomes over time. SD can be used to simulate the hypothesized dynamics inherent in GCM concept maps. We illustrate the potential of the marriage of these methodologies in a case study of BECOMING, a federally-funded program aimed at strengthening the cross-sector system of care for youth with severe emotional disturbances. Copyright © 2016 Elsevier Ltd. All rights reserved.

Mapping uncharted territory in ice from zeolite networks to ice structures.

PubMed

Engel, Edgar A; Anelli, Andrea; Ceriotti, Michele; Pickard, Chris J; Needs, Richard J

2018-06-05

Ice is one of the most extensively studied condensed matter systems. Yet, both experimentally and theoretically several new phases have been discovered over the last years. Here we report a large-scale density-functional-theory study of the configuration space of water ice. We geometry optimise 74,963 ice structures, which are selected and constructed from over five million tetrahedral networks listed in the databases of Treacy, Deem, and the International Zeolite Association. All prior knowledge of ice is set aside and we introduce "generalised convex hulls" to identify configurations stabilised by appropriate thermodynamic constraints. We thereby rediscover all known phases (I-XVII, i, 0 and the quartz phase) except the metastable ice IV. Crucially, we also find promising candidates for ices XVIII through LI. Using the "sketch-map" dimensionality-reduction algorithm we construct an a priori, navigable map of configuration space, which reproduces similarity relations between structures and highlights the novel candidates. By relating the known phases to the tractably small, yet structurally diverse set of synthesisable candidate structures, we provide an excellent starting point for identifying formation pathways.

Spectral mapping of brain functional connectivity from diffusion imaging.

PubMed

Becker, Cassiano O; Pequito, Sérgio; Pappas, George J; Miller, Michael B; Grafton, Scott T; Bassett, Danielle S; Preciado, Victor M

2018-01-23

Understanding the relationship between the dynamics of neural processes and the anatomical substrate of the brain is a central question in neuroscience. On the one hand, modern neuroimaging technologies, such as diffusion tensor imaging, can be used to construct structural graphs representing the architecture of white matter streamlines linking cortical and subcortical structures. On the other hand, temporal patterns of neural activity can be used to construct functional graphs representing temporal correlations between brain regions. Although some studies provide evidence that whole-brain functional connectivity is shaped by the underlying anatomy, the observed relationship between function and structure is weak, and the rules by which anatomy constrains brain dynamics remain elusive. In this article, we introduce a methodology to map the functional connectivity of a subject at rest from his or her structural graph. Using our methodology, we are able to systematically account for the role of structural walks in the formation of functional correlations. Furthermore, in our empirical evaluations, we observe that the eigenmodes of the mapped functional connectivity are associated with activity patterns associated with different cognitive systems.

Ultrahigh resolution optical coherence tomography for quantitative topographic mapping of retinal and intraretinal architectural morphology

NASA Astrophysics Data System (ADS)

Ko, Tony H.; Hartl, Ingmar; Drexler, Wolfgang; Ghanta, Ravi K.; Fujimoto, James G.

2002-06-01

Quantitative, three-dimensional mapping of retinal architectural morphology was achieved using an ultrahigh resolution ophthalmic OCT system. This OCT system utilizes a broad bandwidth titanium-sapphire laser light source generating bandwidths of up to 300 nm near 800 nm center wavelength. The system enables real-time cross-sectional imaging of the retina with ~3 micrometers axial resolution. The macula and the papillomacular axis of a normal human subject were systematically mapped using a series of linear scans. Edge detection and segmentation algorithms were developed to quantify retinal and intraretinal thicknesses. Topographic mapping of the total retinal thickness and the total ganglion cell/inner plexiform layer thickness was achieved around the macula. A topographic mapping quantifying the progressive thickening of the nerve fiber layer (NFL) nasally approaching the optic disk was also demonstrated. The ability to create three-dimensional topographic mapping of retinal architectural morphology at ~3 micrometers axial resolution will be relevant for the diagnosis of many retinal diseases. The topographic quantification of these structures can serve as a powerful tool for developing algorithms and clinical scanning protocols for the screening and staging of ophthalmic diseases such as glaucoma.

High resolution spectroscopic mapping imaging applied in situ to multilayer structures for stratigraphic identification of painted art objects

NASA Astrophysics Data System (ADS)

Karagiannis, Georgios Th.

2016-04-01

The development of non-destructive techniques is a reality in the field of conservation science. These techniques are usually not so accurate, as the analytical micro-sampling techniques, however, the proper development of soft-computing techniques can improve their accuracy. In this work, we propose a real-time fast acquisition spectroscopic mapping imaging system that operates from the ultraviolet to mid infrared (UV/Vis/nIR/mIR) area of the electromagnetic spectrum and it is supported by a set of soft-computing methods to identify the materials that exist in a stratigraphic structure of paint layers. Particularly, the system acquires spectra in diffuse-reflectance mode, scanning in a Region-Of-Interest (ROI), and having wavelength range from 200 up to 5000 nm. Also, a fuzzy c-means clustering algorithm, i.e., the particular soft-computing algorithm, produces the mapping images. The evaluation of the method was tested on a byzantine painted icon.

Computational neural networks in chemistry: Model free mapping devices for predicting chemical reactivity from molecular structure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Elrod, D.W.

1992-01-01

Computational neural networks (CNNs) are a computational paradigm inspired by the brain's massively parallel network of highly interconnected neurons. The power of computational neural networks derives not so much from their ability to model the brain as from their ability to learn by example and to map highly complex, nonlinear functions, without the need to explicitly specify the functional relationship. Two central questions about CNNs were investigated in the context of predicting chemical reactions: (1) the mapping properties of neural networks and (2) the representation of chemical information for use in CNNs. Chemical reactivity is here considered an example ofmore » a complex, nonlinear function of molecular structure. CNN's were trained using modifications of the back propagation learning rule to map a three dimensional response surface similar to those typically observed in quantitative structure-activity and structure-property relationships. The computational neural network's mapping of the response surface was found to be robust to the effects of training sample size, noisy data and intercorrelated input variables. The investigation of chemical structure representation led to the development of a molecular structure-based connection-table representation suitable for neural network training. An extension of this work led to a BE-matrix structure representation that was found to be general for several classes of reactions. The CNN prediction of chemical reactivity and regiochemistry was investigated for electrophilic aromatic substitution reactions, Markovnikov addition to alkenes, Saytzeff elimination from haloalkanes, Diels-Alder cycloaddition, and retro Diels-Alder ring opening reactions using these connectivity-matrix derived representations. The reaction predictions made by the CNNs were more accurate than those of an expert system and were comparable to predictions made by chemists.« less

System of Mueller-Jones matrix polarizing mapping of blood plasma films in breast pathology

NASA Astrophysics Data System (ADS)

Zabolotna, Natalia I.; Radchenko, Kostiantyn O.; Tarnovskiy, Mykola H.

2017-08-01

The combined method of Jones-Mueller matrix mapping and blood plasma films analysis based on the system that proposed in this paper. Based on the obtained data about the structure and state of blood plasma samples the diagnostic conclusions can be make about the state of breast cancer patients ("normal" or "pathology"). Then, by using the statistical analysis obtain statistical and correlational moments for every coordinate distributions; these indicators are served as diagnostic criterias. The final step is to comparing results and choosing the most effective diagnostic indicators. The paper presents the results of Mueller-Jones matrix mapping of optically thin (attenuation coefficient ,τ≤0,1) blood plasma layers.

Lithologic discrimination and alteration mapping from AVIRIS Data, Socorro, New Mexico

NASA Technical Reports Server (NTRS)

Beratan, K. K.; Delillo, N.; Jacobson, A.; Blom, R.; Chapin, C. E.

1993-01-01

Geologic maps are, by their very nature, interpretive documents. In contrasts, images prepared from AVIRIS data can be used as uninterpreted, and thus unbiased, geologic maps. We are having significant success applying AVIRIS data in this non-quantitative manner to geologic problems. Much of our success has come from the power of the Linked Windows Interactive Data System. LinkWinds is a visual data analysis and exploration system under development at JPL which is designed to rapidly and interactively investigate large multivariate data sets. In this paper, we present information on the analysis technique, and preliminary results from research on potassium metasomatism, a distinctive and structurally significant type of alteration associated with crustal extension.

Indoor Map Aided Wi-Fi Integrated Lbs on Smartphone Platforms

NASA Astrophysics Data System (ADS)

Yu, C.; El-Sheimy, N.

2017-09-01

In this research, an indoor map aided INS/Wi-Fi integrated location based services (LBS) applications is proposed and implemented on smartphone platforms. Indoor map information together with measurements from an inertial measurement unit (IMU) and Received Signal Strength Indicator (RSSI) value from Wi-Fi are collected to obtain an accurate, continuous, and low-cost position solution. The main challenge of this research is to make effective use of various measurements that complement each other without increasing the computational burden of the system. The integrated system in this paper includes three modules: INS, Wi-Fi (if signal available) and indoor maps. A cascade structure Particle/Kalman filter framework is applied to combine the different modules. Firstly, INS position and Wi-Fi fingerprint position integrated through Kalman filter for estimating positioning information. Then, indoor map information is applied to correct the error of INS/Wi-Fi estimated position through particle filter. Indoor tests show that the proposed method can effectively reduce the accumulation positioning errors of stand-alone INS systems, and provide stable, continuous and reliable indoor location service.

A Comparison of Electromagnetic Induction Mapping to Measurements of Maximum Effluent Flow Depth for Assessing Flow Paths in Vegetative Treatment Areas

USDA-ARS?s Scientific Manuscript database

Vegetative treatment systems (VTSs) are one type of control structure that has shown potential to control runoff from open feedlots. To achieve maximum performance, sheet-flow over the width of the vegetative treatment area (VTA) is required. Tools, such as maps of flow paths through the VTA, are ne...

Variability of Protein Structure Models from Electron Microscopy.

PubMed

Monroe, Lyman; Terashi, Genki; Kihara, Daisuke

2017-04-04

An increasing number of biomolecular structures are solved by electron microscopy (EM). However, the quality of structure models determined from EM maps vary substantially. To understand to what extent structure models are supported by information embedded in EM maps, we used two computational structure refinement methods to examine how much structures can be refined using a dataset of 49 maps with accompanying structure models. The extent of structure modification as well as the disagreement between refinement models produced by the two computational methods scaled inversely with the global and the local map resolutions. A general quantitative estimation of deviations of structures for particular map resolutions are provided. Our results indicate that the observed discrepancy between the deposited map and the refined models is due to the lack of structural information present in EM maps and thus these annotations must be used with caution for further applications. Copyright © 2017 Elsevier Ltd. All rights reserved.

Dynamic edge warping - An experimental system for recovering disparity maps in weakly constrained systems

NASA Technical Reports Server (NTRS)

Boyer, K. L.; Wuescher, D. M.; Sarkar, S.

1991-01-01

Dynamic edge warping (DEW), a technique for recovering reasonably accurate disparity maps from uncalibrated stereo image pairs, is presented. No precise knowledge of the epipolar camera geometry is assumed. The technique is embedded in a system including structural stereopsis on the front end and robust estimation in digital photogrammetry on the other for the purpose of self-calibrating stereo image pairs. Once the relative camera orientation is known, the epipolar geometry is computed and the system can use this information to refine its representation of the object space. Such a system will find application in the autonomous extraction of terrain maps from stereo aerial photographs, for which camera position and orientation are unknown a priori, and for online autonomous calibration maintenance for robotic vision applications, in which the cameras are subject to vibration and other physical disturbances after calibration. This work thus forms a component of an intelligent system that begins with a pair of images and, having only vague knowledge of the conditions under which they were acquired, produces an accurate, dense, relative depth map. The resulting disparity map can also be used directly in some high-level applications involving qualitative scene analysis, spatial reasoning, and perceptual organization of the object space. The system as a whole substitutes high-level information and constraints for precise geometric knowledge in driving and constraining the early correspondence process.

Using Vegetation Maps to Provide Information on Soil Distribution

NASA Astrophysics Data System (ADS)

José Ibáñez, Juan; Pérez-Gómez, Rufino; Brevik, Eric C.; Cerdà, Artemi

2016-04-01

Many different types of maps (geology, hydrology, soil, vegetation, etc.) are created to inventory natural resources. Each of these resources is mapped using a unique set of criteria, including scales and taxonomies. Past research has indicated that comparing the results of different but related maps (e.g., soil and geology maps) may aid in identifying deficiencies in those maps. Therefore, this study was undertaken in the Almería Province (Andalusia, Spain) to (i) compare the underlying map structures of soil and vegetation maps and (ii) to investigate if a vegetation map can provide useful soil information that was not shown on a soil map. To accomplish this soil and vegetation maps were imported into ArcGIS 10.1 for spatial analysis. Results of the spatial analysis were exported to Microsoft Excel worksheets for statistical analyses to evaluate fits to linear and power law regression models. Vegetative units were grouped according to the driving forces that determined their presence or absence (P/A): (i) climatophilous (climate is the only determinant of P/A) (ii); lithologic-climate (climate and parent material determine PNV P/A); and (iii) edaphophylous (soil features determine PNV P/A). The rank abundance plots for both the soil and vegetation maps conformed to Willis or Hollow Curves, meaning the underlying structures of both maps were the same. Edaphophylous map units, which represent 58.5% of the vegetation units in the study area, did not show a good correlation with the soil map. Further investigation revealed that 87% of the edaphohygrophylous units (which demand more soil water than is supplied by other soil types in the surrounding landscape) were found in ramblas, ephemeral riverbeds that are not typically classified and mapped as soils in modern systems, even though they meet the definition of soil given by the most commonly used and most modern soil taxonomic systems. Furthermore, these edaphophylous map units tend to be islands of biodiversity that are threatened by anthropogenic activity in the region. Therefore, this study revealed areas in Almería Province that need to be revisited and studied pedologically. The vegetation mapped in these areas and the soils that support it are key components of the earth's critical zone that must be studied, understood, and preserved.

AEGIS: a wildfire prevention and management information system

NASA Astrophysics Data System (ADS)

Kalabokidis, K.; Ager, A.; Finney, M.; Athanasis, N.; Palaiologou, P.; Vasilakos, C.

2015-10-01

A Web-GIS wildfire prevention and management platform (AEGIS) was developed as an integrated and easy-to-use decision support tool (http://aegis.aegean.gr). The AEGIS platform assists with early fire warning, fire planning, fire control and coordination of firefighting forces by providing access to information that is essential for wildfire management. Databases were created with spatial and non-spatial data to support key system functionalities. Updated land use/land cover maps were produced by combining field inventory data with high resolution multispectral satellite images (RapidEye) to be used as inputs in fire propagation modeling with the Minimum Travel Time algorithm. End users provide a minimum number of inputs such as fire duration, ignition point and weather information to conduct a fire simulation. AEGIS offers three types of simulations; i.e. single-fire propagations, conditional burn probabilities and at the landscape-level, similar to the FlamMap fire behavior modeling software. Artificial neural networks (ANN) were utilized for wildfire ignition risk assessment based on various parameters, training methods, activation functions, pre-processing methods and network structures. The combination of ANNs and expected burned area maps produced an integrated output map for fire danger prediction. The system also incorporates weather measurements from remote automatic weather stations and weather forecast maps. The structure of the algorithms relies on parallel processing techniques (i.e. High Performance Computing and Cloud Computing) that ensure computational power and speed. All AEGIS functionalities are accessible to authorized end users through a web-based graphical user interface. An innovative mobile application, AEGIS App, acts as a complementary tool to the web-based version of the system.

Attractors for discrete periodic dynamical systems

Treesearch

John E. Franke; James F. Selgrade

2003-01-01

A mathematical framework is introduced to study attractors of discrete, nonautonomous dynamical systems which depend periodically on time. A structure theorem for such attractors is established which says that the attractor of a time-periodic dynamical system is the unin of attractors of appropriate autonomous maps. If the nonautonomous system is a perturbation of an...

SITE TECHNOLOGY CAPSULE: GIS\\KEY ENVIRONMENTAL DATA MANAGEMENT SYSTEM

EPA Science Inventory

GIS/Key™ is a comprehensive environmental database management system that integrates site data and graphics, enabling the user to create geologic cross-sections; boring logs; potentiometric, isopleth, and structure maps; summary tables; and hydrographs. GIS/Key™ is menu-driven an...

Design and update of a classification system: the UCSD map of science.

PubMed

Börner, Katy; Klavans, Richard; Patek, Michael; Zoss, Angela M; Biberstine, Joseph R; Light, Robert P; Larivière, Vincent; Boyack, Kevin W

2012-01-01

Global maps of science can be used as a reference system to chart career trajectories, the location of emerging research frontiers, or the expertise profiles of institutes or nations. This paper details data preparation, analysis, and layout performed when designing and subsequently updating the UCSD map of science and classification system. The original classification and map use 7.2 million papers and their references from Elsevier's Scopus (about 15,000 source titles, 2001-2005) and Thomson Reuters' Web of Science (WoS) Science, Social Science, Arts & Humanities Citation Indexes (about 9,000 source titles, 2001-2004)-about 16,000 unique source titles. The updated map and classification adds six years (2005-2010) of WoS data and three years (2006-2008) from Scopus to the existing category structure-increasing the number of source titles to about 25,000. To our knowledge, this is the first time that a widely used map of science was updated. A comparison of the original 5-year and the new 10-year maps and classification system show (i) an increase in the total number of journals that can be mapped by 9,409 journals (social sciences had a 80% increase, humanities a 119% increase, medical (32%) and natural science (74%)), (ii) a simplification of the map by assigning all but five highly interdisciplinary journals to exactly one discipline, (iii) a more even distribution of journals over the 554 subdisciplines and 13 disciplines when calculating the coefficient of variation, and (iv) a better reflection of journal clusters when compared with paper-level citation data. When evaluating the map with a listing of desirable features for maps of science, the updated map is shown to have higher mapping accuracy, easier understandability as fewer journals are multiply classified, and higher usability for the generation of data overlays, among others.

Interindividual registration and dose mapping for voxelwise population analysis of rectal toxicity in prostate cancer radiotherapy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dréan, Gaël; Acosta, Oscar, E-mail: Oscar.Acosta@univ-rennes1.fr; Simon, Antoine

2016-06-15

Purpose: Recent studies revealed a trend toward voxelwise population analysis in order to understand the local dose/toxicity relationships in prostate cancer radiotherapy. Such approaches require, however, an accurate interindividual mapping of the anatomies and 3D dose distributions toward a common coordinate system. This step is challenging due to the high interindividual variability. In this paper, the authors propose a method designed for interindividual nonrigid registration of the rectum and dose mapping for population analysis. Methods: The method is based on the computation of a normalized structural description of the rectum using a Laplacian-based model. This description takes advantage of themore » tubular structure of the rectum and its centerline to be embedded in a nonrigid registration-based scheme. The performances of the method were evaluated on 30 individuals treated for prostate cancer in a leave-one-out cross validation. Results: Performance was measured using classical metrics (Dice score and Hausdorff distance), along with new metrics devised to better assess dose mapping in relation with structural deformation (dose-organ overlap). Considering these scores, the proposed method outperforms intensity-based and distance maps-based registration methods. Conclusions: The proposed method allows for accurately mapping interindividual 3D dose distributions toward a single anatomical template, opening the way for further voxelwise statistical analysis.« less

Internet-based information system of digital geological data providing

NASA Astrophysics Data System (ADS)

Yuon, Egor; Soukhanov, Mikhail; Markov, Kirill

2015-04-01

One of the Russian Federal аgency of mineral resources problems is to provide the geological information which was delivered during the field operation for the means of federal budget. This information should be present in the current, conditional form. Before, the leading way of presenting geological information were paper geological maps, slices, borehole diagrams reports etc. Technologies of database construction, including distributed databases, technologies of construction of distributed information-analytical systems and Internet-technologies are intensively developing nowadays. Most of geological organizations create their own information systems without any possibility of integration into other systems of the same orientation. In 2012, specialists of VNIIgeosystem together with specialists of VSEGEI started the large project - creating the system of providing digital geological materials with using modern and perspective internet-technologies. The system is based on the web-server and the set of special programs, which allows users to efficiently get rasterized and vectorised geological materials. These materials are: geological maps of scale 1:1M, geological maps of scale 1:200 000 and 1:2 500 000, the fragments of seamless geological 1:1M maps, structural zoning maps inside the seamless fragments, the legends for State geological maps 1:200 000 and 1:1 000 000, full author's set of maps and also current materials for international projects «Atlas of geological maps for Circumpolar Arctic scale 1:5 000 000» and «Atlas of Geologic maps of central Asia and adjacent areas scale 1:2 500 000». The most interesting and functional block of the system - is the block of providing structured and well-formalized geological vector materials, based on Gosgeolkart database (NGKIS), managed by Oracle and the Internet-access is supported by web-subsystem NGKIS, which is currently based on MGS-Framework platform, developed by VNIIgeosystem. One of the leading elements is the web-service, which realizes the interaction of all parts of the system and controls whole the way of the request from the user to the database and back, adopted to the GeoSciML and EarthResourceML view. The experience of creation the Internet-based information system of digital geological data providing, and also previous works, including the developing of web-service of NGKIS-system, allows to tell, that technological realization of presenting Russian geological-cartographical data with using of international standards is possible. While realizing, it could be some difficulties, associated with geological material depth. Russian informational geological model is more deep and wide, than foreign. This means the main problem of using international standards and formats: Russian geological data presentation is possible only with decreasing the data detalisation. But, such a problem becomes not very important, if the service publishes also Russian vocabularies, not associated with international vocabularies. In this case, the international format could be the interchange format to change data between Russian users. The integration into the international projects reaches developing of the correlation schemes between Russian and foreign classificators and vocabularies.

GTX Reference Vehicle Structural Verification Methods and Weight Summary

NASA Technical Reports Server (NTRS)

Hunter, J. E.; McCurdy, D. R.; Dunn, P. W.

2002-01-01

The design of a single-stage-to-orbit air breathing propulsion system requires the simultaneous development of a reference launch vehicle in order to achieve the optimal mission performance. Accordingly, for the GTX study a 300-lb payload reference vehicle was preliminary sized to a gross liftoff weight (GLOW) of 238,000 lb. A finite element model of the integrated vehicle/propulsion system was subjected to the trajectory environment and subsequently optimized for structural efficiency. This study involved the development of aerodynamic loads mapped to finite element models of the integrated system in order to assess vehicle margins of safety. Commercially available analysis codes were used in the process along with some internally developed spread-sheets and FORTRAN codes specific to the GTX geometry for mapping of thermal and pressure loads. A mass fraction of 0.20 for the integrated system dry weight has been the driver for a vehicle design consisting of state-of-the-art composite materials in order to meet the rigid weight requirements. This paper summarizes the methodology used for preliminary analyses and presents the current status of the weight optimization for the structural components of the integrated system.

GTX Reference Vehicle Structural Verification Methods and Weight Summary

NASA Technical Reports Server (NTRS)

Hunter, J. E.; McCurdy, D. R.; Dunn, P. W.

2002-01-01

The design of a single-stage-to-orbit air breathing propulsion system requires the simultaneous development of a reference launch vehicle in order to achieve the optimal mission performance. Accordingly, for the GTX study a 300-lb payload reference vehicle was preliminarily sized to a gross liftoff weight (GLOW) of 238,000 lb. A finite element model of the integrated vehicle/propulsion system was subjected to the trajectory environment and subsequently optimized for structural efficiency. This study involved the development of aerodynamic loads mapped to finite element models of the integrated system in order to assess vehicle margins of safety. Commercially available analysis codes were used in the process along with some internally developed spreadsheets and FORTRAN codes specific to the GTX geometry for mapping of thermal and pressure loads. A mass fraction of 0.20 for the integrated system dry weight has been the driver for a vehicle design consisting of state-of-the-art composite materials in order to meet the rigid weight requirements. This paper summarizes the methodology used for preliminary analyses and presents the current status of the weight optimization for the structural components of the integrated system.

The HCMM system: Development and performance

NASA Technical Reports Server (NTRS)

Stuart, L. M., Jr.

1982-01-01

The structure and history of the heat capacity mapping mission program is reviewed and the spacecraft is described including engineering specifications, instrument design, data handling, and image characteristics.

Paleotectonic investigations of the Pennsylvanian System in the United States, part I: introduction and regional analyses of the Pennsylvanian System

USGS Publications Warehouse

McKee, Edwin D.; Crosby, Eleanor J.; Bachman, George O.; Bell, Kenneth G.; Dixon, George H.; Frezon, Sherwood E.; Glick, Ernest E.; Irwin, William P.; Mallory, William W.; Mapel, William J.; Maughan, Edwin K.; Prichard, George E.; Shideler, Gerald L.; Stewart, Gary F.; Wanless, Harold R.; Wilson, Richard F.

1975-01-01

The Pennsylvanian is the fourth geologic system to be analyzed and synthesized by geologists of the U.S. Geological Survey in the form of a paleotectonic study covering the conterminous United States. Earlier investigations were of the Jurassic, Triassic, and Permian Systems. Results were published as Miscellaneous Geologic Investigation Maps I-175, I-300, and I-450 and in Professional Paper 515. The objective of these investigations is to provide in graphic form the factual basis for recognition of tectonic events of each system on a countrywide scale. The maps in this publication depict rock thickness, generalized lithology, ancient geography, and other regional relations of the Pennsylvanian System. Method of preparation of the maps, the stratigraphic limits of the map units, and various stratigraphic and structural features and their probable tectonic significance are discussed. Pennsylvanian data were largely compiled between 1961 and 196 by 16 geologists, including the late Harold R. Wanless, who covered the five eastern regions and contributed to several of the special studies. The areas of responsibility of the cooperating geologists are indicated in figure 1. Work in Kansas was done by Gary F. Stewart, of the Kansas Geological Survey. Results of this investigation are presented in three units. Part I comprises an introduction and 17 chapters, each describing and discussing one of the regions in which the conterminous United States was divided for purposes of study and mapping. Part II is a synthesis of Pennsylvanian history to accompany interpretive maps of the five divisions of the Pennsylvanian System treated in this publication; it also includes a series of chapters on depositional environments, climatic conditions, and economic products of the system. The final section of part II is devoted to an index of localities and sources used in construction of the principal maps of this publication. Part III consists of the plates on which are presented the major maps and sections.

Assessment of a visually guided autonomous exploration robot

NASA Astrophysics Data System (ADS)

Harris, C.; Evans, R.; Tidey, E.

2008-10-01

A system has been developed to enable a robot vehicle to autonomously explore and map an indoor environment using only visual sensors. The vehicle is equipped with a single camera, whose output is wirelessly transmitted to an off-board standard PC for processing. Visual features within the camera imagery are extracted and tracked, and their 3D positions are calculated using a Structure from Motion algorithm. As the vehicle travels, obstacles in its surroundings are identified and a map of the explored region is generated. This paper discusses suitable criteria for assessing the performance of the system by computer-based simulation and practical experiments with a real vehicle. Performance measures identified include the positional accuracy of the 3D map and the vehicle's location, the efficiency and completeness of the exploration and the system reliability. Selected results are presented and the effect of key system parameters and algorithms on performance is assessed. This work was funded by the Systems Engineering for Autonomous Systems (SEAS) Defence Technology Centre established by the UK Ministry of Defence.

A map of abstract relational knowledge in the human hippocampal-entorhinal cortex.

PubMed

Garvert, Mona M; Dolan, Raymond J; Behrens, Timothy Ej

2017-04-27

The hippocampal-entorhinal system encodes a map of space that guides spatial navigation. Goal-directed behaviour outside of spatial navigation similarly requires a representation of abstract forms of relational knowledge. This information relies on the same neural system, but it is not known whether the organisational principles governing continuous maps may extend to the implicit encoding of discrete, non-spatial graphs. Here, we show that the human hippocampal-entorhinal system can represent relationships between objects using a metric that depends on associative strength. We reconstruct a map-like knowledge structure directly from a hippocampal-entorhinal functional magnetic resonance imaging adaptation signal in a situation where relationships are non-spatial rather than spatial, discrete rather than continuous, and unavailable to conscious awareness. Notably, the measure that best predicted a behavioural signature of implicit knowledge and blood oxygen level-dependent adaptation was a weighted sum of future states, akin to the successor representation that has been proposed to account for place and grid-cell firing patterns.

Using Concept Maps to Monitor Knowledge Structure Changes in a Science Classroom

NASA Astrophysics Data System (ADS)

Cook, Leah J.

The aim of this research is to determine what differences may exist in students' structural knowledge while using a variety of concept mapping assessments. A concept map can be used as an assessment which connects concepts in a knowledge domain. A single assessment may not be powerful enough to establish how students' new knowledge relates to prior knowledge. More research is needed to establish how various aspects of the concept mapping task influence the output of map creation by students. Using multiple concept maps and pre-instruction and post-instruction VNOS instruments during a 16-week semester, this study was designed to investigate the impact of concept map training and the impact of assessment design on the created maps. Also, this study was designed to determine what differences can be observed between expert and novice maps and if similarities and differences exist between concept maps and an open-ended assessment. Participants created individual maps and the maps were analyzed for structural complexity, overall structure, and content. The concept maps were then compared by their timing, design, and scores. The results indicate that concept mapping training does significantly impact the shape and structure complexity of the map created by students. Additionally, these data support that students should be frequently reminded of appropriate concept mapping skills and opportunities so that good mapping skills will be utilized. Changing the assessment design does appear to be able to impact the overall structure and complexity of created maps, while narrowing the content focus of the map does not necessarily restrict the overall structure or the complexity. Furthermore, significant differences in structural complexity were observed between novice and expert mappers. The fluctuations of NOS concepts identified in student created maps may suggest why some students were still confused or had incorrect conceptions of NOS, despite explicit and reflective instruction throughout the semester.

Structural analysis and thermal remote sensing of the Los Humeros Volcanic Complex: Implications for volcano structure and geothermal exploration

NASA Astrophysics Data System (ADS)

Norini, G.; Groppelli, G.; Sulpizio, R.; Carrasco-Núñez, G.; Dávila-Harris, P.; Pellicioli, C.; Zucca, F.; De Franco, R.

2015-08-01

The Los Humeros Volcanic Complex (LHVC) is an important geothermal target in the Trans-Mexican Volcanic Belt. Understanding the structure of the LHVC and its influence on the occurrence of thermal anomalies and hydrothermal fluids is important to get insights into the interplay between the volcano-tectonic setting and the characteristics of the geothermal resources in the area. In this study, we present a structural analysis of the LHVC, focused on Quaternary tectonic and volcano-tectonic features, including the areal distribution of monogenetic volcanic centers. Morphostructural analysis and structural field mapping revealed the geometry, kinematics and dynamics of the structural features in the study area. Also, thermal infrared remote sensing analysis has been applied to the LHVC for the first time, to map the main endogenous thermal anomalies. These data are integrated with newly proposed Unconformity Bounded Stratigraphic Units, to evaluate the implications for the structural behavior of the caldera complex and geothermal field. The LHVC is characterized by a multistage formation, with at least two major episodes of caldera collapse: Los Humeros Caldera (460 ka) and Los Potreros Caldera (100 ka). The study suggests that the geometry of the first collapse recalls a trap-door structure and impinges on a thick volcanic succession (10.5-1.55 Ma), now hosting the geothermal reservoir. The main ring-faults of the two calderas are buried and sealed by the widespread post-calderas volcanic products, and for this reason they probably do not have enough permeability to be the main conveyers of the hydrothermal fluid circulation. An active, previously unrecognized fault system of volcano-tectonic origin has been identified inside the Los Potreros Caldera. This fault system is the main geothermal target, probably originated by active resurgence of the caldera floor. The active fault system defines three distinct structural sectors in the caldera floor, where the occurrence of hydrothermal fluids is controlled by fault-induced secondary permeability. The resurgence of the caldera floor could be induced by an inferred magmatic intrusion, representing the heat source of the geothermal system and feeding the simultaneous monogenetic volcanic activity around the deforming area. The operation of the geothermal field and the plans for further exploration should focus on, both, the active resurgence fault system and the new endogenous thermal anomalies mapped outside the known boundaries of the geothermal field.

Grammatical complexity for two-dimensional maps

NASA Astrophysics Data System (ADS)

Hagiwara, Ryouichi; Shudo, Akira

2004-11-01

We calculate the grammatical complexity of the symbol sequences generated from the Hénon map and the Lozi map using the recently developed methods to construct the pruning front. When the map is hyperbolic, the language of symbol sequences is regular in the sense of the Chomsky hierarchy and the corresponding grammatical complexity takes finite values. It is found that the complexity exhibits a self-similar structure as a function of the system parameter, and the similarity of the pruning fronts is discussed as an origin of such self-similarity. For non-hyperbolic cases, it is observed that the complexity monotonically increases as we increase the resolution of the pruning front.

Using knowledge rules for pharmacy mapping.

PubMed

Shakib, Shaun C; Che, Chengjian; Lau, Lee Min

2006-01-01

The 3M Health Information Systems (HIS) Healthcare Data Dictionary (HDD) is used to encode and structure patient medication data for the Electronic Health Record (EHR) of the Department of Defense's (DoD's) Armed Forces Health Longitudinal Technology Application (AHLTA). HDD Subject Matter Experts (SMEs) are responsible for initial and maintenance mapping of disparate, standalone medication master files from all 100 DoD host sites worldwide to a single concept-based vocabulary, to accomplish semantic interoperability. To achieve higher levels of automation, SMEs began defining a growing set of knowledge rules. These knowledge rules were implemented in a pharmacy mapping tool, which enhanced consistency through automation and increased mapping rate by 29%.

LOFAR Lightning Imaging: Mapping Lightning With Nanosecond Precision

NASA Astrophysics Data System (ADS)

Hare, B. M.; Scholten, O.; Bonardi, A.; Buitink, S.; Corstanje, A.; Ebert, U.; Falcke, H.; Hörandel, J. R.; Leijnse, H.; Mitra, P.; Mulrey, K.; Nelles, A.; Rachen, J. P.; Rossetto, L.; Rutjes, C.; Schellart, P.; Thoudam, S.; Trinh, T. N. G.; ter Veen, S.; Winchen, T.

2018-03-01

Lightning mapping technology has proven instrumental in understanding lightning. In this work we present a pipeline that can use lightning observed by the LOw-Frequency ARray (LOFAR) radio telescope to construct a 3-D map of the flash. We show that LOFAR has unparalleled precision, on the order of meters, even for lightning flashes that are over 20 km outside the area enclosed by LOFAR antennas (˜3,200 km2), and can potentially locate over 10,000 sources per lightning flash. We also show that LOFAR is the first lightning mapping system that is sensitive to the spatial structure of the electrical current during individual lightning leader steps.

Concept mapping as an approach for expert-guided model building: The example of health literacy.

PubMed

Soellner, Renate; Lenartz, Norbert; Rudinger, Georg

2017-02-01

Concept mapping served as the starting point for the aim of capturing the comprehensive structure of the construct of 'health literacy.' Ideas about health literacy were generated by 99 experts and resulted in 105 statements that were subsequently organized by 27 experts in an unstructured card sorting. Multidimensional scaling was applied to the sorting data and a two and three-dimensional solution was computed. The three dimensional solution was used in subsequent cluster analysis and resulted in a concept map of nine "clusters": (1) self-regulation, (2) self-perception, (3) proactive approach to health, (4) basic literacy and numeracy skills, (5) information appraisal, (6) information search, (7) health care system knowledge and acting, (8) communication and cooperation, and (9) beneficial personality traits. Subsequently, this concept map served as a starting point for developing a "qualitative" structural model of health literacy and a questionnaire for the measurement of health literacy. On the basis of questionnaire data, a "quantitative" structural model was created by first applying exploratory factor analyses (EFA) and then cross-validating the model with confirmatory factor analyses (CFA). Concept mapping proved to be a highly valuable tool for the process of model building up to translational research in the "real world". Copyright © 2016 Elsevier Ltd. All rights reserved.

Mapping algorithm for freeform construction using non-ideal light sources

NASA Astrophysics Data System (ADS)

Li, Chen; Michaelis, D.; Schreiber, P.; Dick, L.; Bräuer, A.

2015-09-01

Using conventional mapping algorithms for the construction of illumination freeform optics' arbitrary target pattern can be obtained for idealized sources, e.g. collimated light or point sources. Each freeform surface element generates an image point at the target and the light intensity of an image point is corresponding to the area of the freeform surface element who generates the image point. For sources with a pronounced extension and ray divergence, e.g. an LED with a small source-freeform-distance, the image points are blurred and the blurred patterns might be different between different points. Besides, due to Fresnel losses and vignetting, the relationship between light intensity of image points and area of freeform surface elements becomes complicated. These individual light distributions of each freeform element are taken into account in a mapping algorithm. To this end the method of steepest decent procedures are used to adapt the mapping goal. A structured target pattern for a optics system with an ideal source is computed applying corresponding linear optimization matrices. Special weighting factor and smoothing factor are included in the procedures to achieve certain edge conditions and to ensure the manufacturability of the freefrom surface. The corresponding linear optimization matrices, which are the lighting distribution patterns of each of the freeform surface elements, are gained by conventional raytracing with a realistic source. Nontrivial source geometries, like LED-irregularities due to bonding or source fine structures, and a complex ray divergence behavior can be easily considered. Additionally, Fresnel losses, vignetting and even stray light are taken into account. After optimization iterations, with a realistic source, the initial mapping goal can be achieved by the optics system providing a structured target pattern with an ideal source. The algorithm is applied to several design examples. A few simple tasks are presented to discussed the ability and limitation of the this mothed. It is also presented that a homogeneous LED-illumination system design, in where, with a strongly tilted incident direction, a homogeneous distribution is achieved with a rather compact optics system and short working distance applying a relatively large LED source. It is shown that the lighting distribution patterns from the freeform surface elements can be significantly different from the others. The generation of a structured target pattern, applying weighting factor and smoothing factor, are discussed. Finally, freeform designs for much more complex sources like clusters of LED-sources are presented.

A Web-based Visualization System for Three Dimensional Geological Model using Open GIS

NASA Astrophysics Data System (ADS)

Nemoto, T.; Masumoto, S.; Nonogaki, S.

2017-12-01

A three dimensional geological model is an important information in various fields such as environmental assessment, urban planning, resource development, waste management and disaster mitigation. In this study, we have developed a web-based visualization system for 3D geological model using free and open source software. The system has been successfully implemented by integrating web mapping engine MapServer and geographic information system GRASS. MapServer plays a role of mapping horizontal cross sections of 3D geological model and a topographic map. GRASS provides the core components for management, analysis and image processing of the geological model. Online access to GRASS functions has been enabled using PyWPS that is an implementation of WPS (Web Processing Service) Open Geospatial Consortium (OGC) standard. The system has two main functions. Two dimensional visualization function allows users to generate horizontal and vertical cross sections of 3D geological model. These images are delivered via WMS (Web Map Service) and WPS OGC standards. Horizontal cross sections are overlaid on the topographic map. A vertical cross section is generated by clicking a start point and an end point on the map. Three dimensional visualization function allows users to visualize geological boundary surfaces and a panel diagram. The user can visualize them from various angles by mouse operation. WebGL is utilized for 3D visualization. WebGL is a web technology that brings hardware-accelerated 3D graphics to the browser without installing additional software. The geological boundary surfaces can be downloaded to incorporate the geologic structure in a design on CAD and model for various simulations. This study was supported by JSPS KAKENHI Grant Number JP16K00158.

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

DOE PAGES

Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos; ...

2016-02-24

The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provide d via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the associated sequence datasets consisting of scaffolds/contigs with optional coverage information and/or unassembled reads in fasta and fastq file formats. The MAP processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNAs, as well as CRISPR elements. Structural annotation ismore » followed by functional annotation including assignment of protein product names and connection to various protein family databases.« less

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huntemann, Marcel; Ivanova, Natalia N.; Mavromatis, Konstantinos

The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) system for comparative analysis. The pipeline runs on nucleotide sequences provide d via the IMG submission site. Users must first define their analysis projects in GOLD and then submit the associated sequence datasets consisting of scaffolds/contigs with optional coverage information and/or unassembled reads in fasta and fastq file formats. The MAP processing consists of feature prediction including identification of protein-coding genes, non-coding RNAs and regulatory RNAs, as well as CRISPR elements. Structural annotation ismore » followed by functional annotation including assignment of protein product names and connection to various protein family databases.« less

Analysis of ERTS imagery of Wyoming and its application to evaluation of Wyoming's natural resources

NASA Technical Reports Server (NTRS)

Houston, R. S. (Principal Investigator); Marrs, R. W.

1972-01-01

The author has identified the following significant results. The Wyoming ERTS investigation has been hindered only slightly by incomplete ERTS data sets and lack of coverage. Efforts to map cultural development, vegetation distributions, and various geomorphologic features are underway. Tectonic analysis of the Rock Springs area has isolated two linear features that may be very significant with regard to the regional structure of central Wyoming. Studies of the fracture systems of the Wind River Mountains are being completed. The fracture map, constructed from ERTS-1 interpretations, contains a great deal of structural information which was previously unavailable. Mapping of the Precambrian metasedimentary and metavolcanic terrain of the Granite Mountains is nearing completion, and interpretation of ERTS supporting aircraft data has revealed deposits of iron formation.

A large-grain mapping approach for multiprocessor systems through data flow model. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Kim, Hwa-Soo

1991-01-01

A large-grain level mapping method is presented of numerical oriented applications onto multiprocessor systems. The method is based on the large-grain data flow representation of the input application and it assumes a general interconnection topology of the multiprocessor system. The large-grain data flow model was used because such representation best exhibits inherited parallelism in many important applications, e.g., CFD models based on partial differential equations can be presented in large-grain data flow format, very effectively. A generalized interconnection topology of the multiprocessor architecture is considered, including such architectural issues as interprocessor communication cost, with the aim to identify the 'best matching' between the application and the multiprocessor structure. The objective is to minimize the total execution time of the input algorithm running on the target system. The mapping strategy consists of the following: (1) large-grain data flow graph generation from the input application using compilation techniques; (2) data flow graph partitioning into basic computation blocks; and (3) physical mapping onto the target multiprocessor using a priority allocation scheme for the computation blocks.

GIS\\KEY™ ENVIRONMENTAL DATA MANAGEMENT SYSTEM - INNOVATIVE TECHNOLOGY EVALUATION REPORT

EPA Science Inventory

GIS/Key™ is a comprehensive environmental database management system that integrates site data and graphics, enabling the user to create geologic cross-sections; boring logs; potentiometric, isopleth, and structure maps; summary tables; and hydrographs. GIS/Key™ is menu-driven an...

Metaphorical motion in mathematical reasoning: further evidence for pre-motor implementation of structure mapping in abstract domains.

PubMed

Fields, Chris

2013-08-01

The theory of computation and category theory both employ arrow-based notations that suggest that the basic metaphor "state changes are like motions" plays a fundamental role in all mathematical reasoning involving formal manipulations. If this is correct, structure-mapping inferences implemented by the pre-motor action planning system can be expected to be involved in solving any mathematics problems not solvable by table lookups and number line manipulations alone. Available functional imaging studies of multi-digit arithmetic, algebra, geometry and calculus problem solving are consistent with this expectation.

Computational methods for constructing protein structure models from 3D electron microscopy maps.

PubMed

Esquivel-Rodríguez, Juan; Kihara, Daisuke

2013-10-01

Protein structure determination by cryo-electron microscopy (EM) has made significant progress in the past decades. Resolutions of EM maps have been improving as evidenced by recently reported structures that are solved at high resolutions close to 3Å. Computational methods play a key role in interpreting EM data. Among many computational procedures applied to an EM map to obtain protein structure information, in this article we focus on reviewing computational methods that model protein three-dimensional (3D) structures from a 3D EM density map that is constructed from two-dimensional (2D) maps. The computational methods we discuss range from de novo methods, which identify structural elements in an EM map, to structure fitting methods, where known high resolution structures are fit into a low-resolution EM map. A list of available computational tools is also provided. Copyright © 2013 Elsevier Inc. All rights reserved.

Fuel loads and fuel type mapping

USGS Publications Warehouse

Chuvieco, Emilio; Riaño, David; Van Wagtendonk, Jan W.; Morsdof, Felix; Chuvieco, Emilio

2003-01-01

Correct description of fuel properties is critical to improve fire danger assessment and fire behaviour modeling, since they guide both fire ignition and fire propagation. This chapter deals with properties of fuel that can be considered static in short periods of time: biomass loads, plant geometry, compactness, etc. Mapping these properties require a detail knowledge of vegetation vertical and horizontal structure. Several systems to classify the great diversity of vegetation characteristics in few fuel types are described, as well as methods for mapping them with special emphasis on those based on remote sensing images.

Photogrammetry of the Map Instrument in a Cryogenic Vacuum Environment

NASA Technical Reports Server (NTRS)

Hill, M.; Packard, E.; Pazar, R.

2000-01-01

MAP Instrument requirements dictated that the instruments Focal Plane Assembly (FPA) and Thermal Reflector System (TRS) maintain a high degree of structural integrity at operational temperatures (< 50K). To verify integrity at these extremes, an elaborate test fixture was constructed to provide a large cryogenic (< 20K) radiative environment and a mobile photogrammetry camera. This paper will discuss MAP's Instrument requirements, how those requirements were verified using photogrammetry, and the test setup used to provide the environment and camera movement needed to verify the instrument's requirements.

Solving the Helmholtz equation in conformal mapped ARROW structures using homotopy perturbation method.

PubMed

Reck, Kasper; Thomsen, Erik V; Hansen, Ole

2011-01-31

The scalar wave equation, or Helmholtz equation, describes within a certain approximation the electromagnetic field distribution in a given system. In this paper we show how to solve the Helmholtz equation in complex geometries using conformal mapping and the homotopy perturbation method. The solution of the mapped Helmholtz equation is found by solving an infinite series of Poisson equations using two dimensional Fourier series. The solution is entirely based on analytical expressions and is not mesh dependent. The analytical results are compared to a numerical (finite element method) solution.

Dead reckoning pedometer

DOEpatents

Eakle, Jr., Robert F.; Hofstetter, Kenneth J.

2003-04-15

A system to determine the location of a person within a structure utilizes a magnetometer, magnets, pressure sensors and a CPU to calculate the length and direction of each step. The data may be displayed to the wearer, preferably on a map or floorplan and may be broadcast to persons outside the structure.

Survey on Ontology Mapping

NASA Astrophysics Data System (ADS)

Zhu, Junwu

To create a sharable semantic space in which the terms from different domain ontology or knowledge system, Ontology mapping become a hot research point in Semantic Web Community. In this paper, motivated factors of ontology mapping research are given firstly, and then 5 dominating theories and methods, such as information accessing technology, machine learning, linguistics, structure graph and similarity, are illustrated according their technology class. Before we analyses the new requirements and takes a long view, the contributions of these theories and methods are summarized in details. At last, this paper suggest to design a group of semantic connector with the ability of migration learning for OWL-2 extended with constrains and the ontology mapping theory of axiom, so as to provide a new methodology for ontology mapping.

Digital geologic map of the Spokane 1:100,000 quadrangle, Washington and Idaho: a digital database for the 1990 N.L. Joseph map

USGS Publications Warehouse

Johnson, Bruce R.; Derkey, Pamela D.

1998-01-01

Geologic data from the geologic map of the Spokane 1:100,000-scale quadrangle compiled by Joseph (1990) were entered into a geographic information system (GIS) as part of a larger effort to create regional digital geology for the Pacific Northwest. The map area is located in eastern Washington and extends across the state border into western Idaho (Fig. 1). This open-file report describes the methods used to convert the geologic map data into a digital format, documents the file structures, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet.

Cerebral cartography and connectomics

PubMed Central

Sporns, Olaf

2015-01-01

Cerebral cartography and connectomics pursue similar goals in attempting to create maps that can inform our understanding of the structural and functional organization of the cortex. Connectome maps explicitly aim at representing the brain as a complex network, a collection of nodes and their interconnecting edges. This article reflects on some of the challenges that currently arise in the intersection of cerebral cartography and connectomics. Principal challenges concern the temporal dynamics of functional brain connectivity, the definition of areal parcellations and their hierarchical organization into large-scale networks, the extension of whole-brain connectivity to cellular-scale networks, and the mapping of structure/function relations in empirical recordings and computational models. Successfully addressing these challenges will require extensions of methods and tools from network science to the mapping and analysis of human brain connectivity data. The emerging view that the brain is more than a collection of areas, but is fundamentally operating as a complex networked system, will continue to drive the creation of ever more detailed and multi-modal network maps as tools for on-going exploration and discovery in human connectomics. PMID:25823870

The role of extreme orbits in the global organization of periodic regions in parameter space for one dimensional maps

NASA Astrophysics Data System (ADS)

da Costa, Diogo Ricardo; Hansen, Matheus; Guarise, Gustavo; Medrano-T, Rene O.; Leonel, Edson D.

2016-04-01

We show that extreme orbits, trajectories that connect local maximum and minimum values of one dimensional maps, play a major role in the parameter space of dissipative systems dictating the organization for the windows of periodicity, hence producing sets of shrimp-like structures. Here we solve three fundamental problems regarding the distribution of these sets and give: (i) their precise localization in the parameter space, even for sets of very high periods; (ii) their local and global distributions along cascades; and (iii) the association of these cascades to complicate sets of periodicity. The extreme orbits are proved to be a powerful indicator to investigate the organization of windows of periodicity in parameter planes. As applications of the theory, we obtain some results for the circle map and perturbed logistic map. The formalism presented here can be extended to many other different nonlinear and dissipative systems.

TQ-bifurcations in discrete dynamical systems: Analysis of qualitative rearrangements of the oscillation mode

DOE Office of Scientific and Technical Information (OSTI.GOV)

Makarenko, A. V., E-mail: avm.science@mail.ru

A new class of bifurcations is defined in discrete dynamical systems, and methods for their diagnostics and the analysis of their properties are presented. The TQ-bifurcations considered are implemented in discrete mappings and are related to the qualitative rearrangement of the shape of trajectories in an extended space of states. Within the demonstration of the main capabilities of the toolkit, an analysis is carried out of a logistic mapping in a domain to the right of the period-doubling limit point. Five critical values of the parameter are found for which the geometric structure of the trajectories of the mapping experiencesmore » a qualitative rearrangement. In addition, an analysis is carried out of the so-called “trace map,” which arises in the problems of quantum-mechanical description of various properties of discrete crystalline and quasicrystalline lattices.« less

Brain maps 4.0-Structure of the rat brain: An open access atlas with global nervous system nomenclature ontology and flatmaps.

PubMed

Swanson, Larry W

2018-04-15

The fourth edition (following editions in 1992, 1998, 2004) of Brain maps: structure of the rat brain is presented here as an open access internet resource for the neuroscience community. One new feature is a set of 10 hierarchical nomenclature tables that define and describe all parts of the rat nervous system within the framework of a strictly topographic system devised previously for the human nervous system. These tables constitute a global ontology for knowledge management systems dealing with neural circuitry. A second new feature is an aligned atlas of bilateral flatmaps illustrating rat nervous system development from the neural plate stage to the adult stage, where most gray matter regions, white matter tracts, ganglia, and nerves listed in the nomenclature tables are illustrated schematically. These flatmaps are convenient for future development of online applications analogous to "Google Maps" for systems neuroscience. The third new feature is a completely revised Atlas of the rat brain in spatially aligned transverse sections that can serve as a framework for 3-D modeling. Atlas parcellation is little changed from the preceding edition, but the nomenclature for rat is now aligned with an emerging panmammalian neuroanatomical nomenclature. All figures are presented in Adobe Illustrator vector graphics format that can be manipulated, modified, and resized as desired, and freely used with a Creative Commons license. © 2018 The Authors The Journal of Comparative Neurology Published by Wiley Periodicals, Inc.

Proceedings of the international conference on cybernetics and societ

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1985-01-01

This book presents the papers given at a conference on artificial intelligence, expert systems and knowledge bases. Topics considered at the conference included automating expert system development, modeling expert systems, causal maps, data covariances, robot vision, image processing, multiprocessors, parallel processing, VLSI structures, man-machine systems, human factors engineering, cognitive decision analysis, natural language, computerized control systems, and cybernetics.

BESIU Physical Analysis on Hadoop Platform

NASA Astrophysics Data System (ADS)

Huo, Jing; Zang, Dongsong; Lei, Xiaofeng; Li, Qiang; Sun, Gongxing

2014-06-01

In the past 20 years, computing cluster has been widely used for High Energy Physics data processing. The jobs running on the traditional cluster with a Data-to-Computing structure, have to read large volumes of data via the network to the computing nodes for analysis, thereby making the I/O latency become a bottleneck of the whole system. The new distributed computing technology based on the MapReduce programming model has many advantages, such as high concurrency, high scalability and high fault tolerance, and it can benefit us in dealing with Big Data. This paper brings the idea of using MapReduce model to do BESIII physical analysis, and presents a new data analysis system structure based on Hadoop platform, which not only greatly improve the efficiency of data analysis, but also reduces the cost of system building. Moreover, this paper establishes an event pre-selection system based on the event level metadata(TAGs) database to optimize the data analyzing procedure.

SPED light sheet microscopy: fast mapping of biological system structure and function

PubMed Central

Tomer, Raju; Lovett-Barron, Matthew; Kauvar, Isaac; Andalman, Aaron; Burns, Vanessa M.; Sankaran, Sethuraman; Grosenick, Logan; Broxton, Michael; Yang, Samuel; Deisseroth, Karl

2016-01-01

The goal of understanding living nervous systems has driven interest in high-speed and large field-of-view volumetric imaging at cellular resolution. Light-sheet microscopy approaches have emerged for cellular-resolution functional brain imaging in small organisms such as larval zebrafish, but remain fundamentally limited in speed. Here we have developed SPED light sheet microscopy, which combines large volumetric field-of-view via an extended depth of field with the optical sectioning of light sheet microscopy, thereby eliminating the need to physically scan detection objectives for volumetric imaging. SPED enables scanning of thousands of volumes-per-second, limited only by camera acquisition rate, through the harnessing of optical mechanisms that normally result in unwanted spherical aberrations. We demonstrate capabilities of SPED microscopy by performing fast sub-cellular resolution imaging of CLARITY mouse brains and cellular-resolution volumetric Ca2+ imaging of entire zebrafish nervous systems. Together, SPED light sheet methods enable high-speed cellular-resolution volumetric mapping of biological system structure and function. PMID:26687363

MAP Propulsion System Thermal Design

NASA Technical Reports Server (NTRS)

Mosier, Carol L.

2003-01-01

The propulsion system of the Microwave Anisotropy Probe (MAP) had stringent requirements that made the thermal design unique. To meet instrument stability requirements the system had to be designed to keep temperatures of all components within acceptable limits without heater cycling. Although the spacecraft remains at a fixed 22 sun angle at L2, the variations in solar constant, property degradation, and bus voltage range all significantly affect the temperature. Large portions of the fuel lines are external to the structure and all components are mounted to non-conductive composite structure. These two facts made the sensitivity to the MLI effective emissivity and bus temperature very high. Approximately two years prior to launch the propulsion system was redesigned to meet MAP requirements. The new design utilized hardware that was already installed in order to meet schedule constraints. The spacecraft design and the thermal requirements were changed to compensate for inadequacies of the existing hardware. The propulsion system consists of fuel lines, fill and drain lines/valve, eight thrusters, a HXCM, and a propulsion tank. A voltage regulator was added to keep critical components within limits. Software was developed to control the operational heaters. Trim resistors were put in series with each operational heater circuits and the tank survival heater. A highly sophisticated test program, which included real time model correlation, was developed to determine trim resistors sizes. These trim resistors were installed during a chamber break and verified during thermal balance testing.

The intercrater plains of Mercury and the Moon: Their nature, origin and role in terrestrial planet evolution. Geologic mapping of Mercury and the Moon. Ph.D. Thesis

NASA Technical Reports Server (NTRS)

Leake, M. A.

1982-01-01

The geologic framework of the intercrater plains on Mercury and the Moon as determined through geologic mapping is presented. The strategies used in such mapping are discussed first. Then, because the degree of crater degradation is applied to both mapping and crater statistics, the correlation of degradation classification of lunar and Mercurian craters is thoroughly addressed. Different imaging systems can potentially affect this classification, and are therefore also discussed. The techniques used in mapping Mercury are discussed in Section 2, followed by presentation of the Geologic Map of Mercury in Section 3. Material units, structures, and relevant albedo and color data are discussed therein. Preliminary conclusions regarding plains' origins are given there. The last section presents the mapping analyses of the lunar intercrater plains, including tentative conclusions of their origin.

Automated mapping of clinical terms into SNOMED-CT. An application to codify procedures in pathology.

PubMed

Allones, J L; Martinez, D; Taboada, M

2014-10-01

Clinical terminologies are considered a key technology for capturing clinical data in a precise and standardized manner, which is critical to accurately exchange information among different applications, medical records and decision support systems. An important step to promote the real use of clinical terminologies, such as SNOMED-CT, is to facilitate the process of finding mappings between local terms of medical records and concepts of terminologies. In this paper, we propose a mapping tool to discover text-to-concept mappings in SNOMED-CT. Name-based techniques were combined with a query expansion system to generate alternative search terms, and with a strategy to analyze and take advantage of the semantic relationships of the SNOMED-CT concepts. The developed tool was evaluated and compared to the search services provided by two SNOMED-CT browsers. Our tool automatically mapped clinical terms from a Spanish glossary of procedures in pathology with 88.0% precision and 51.4% recall, providing a substantial improvement of recall (28% and 60%) over other publicly accessible mapping services. The improvements reached by the mapping tool are encouraging. Our results demonstrate the feasibility of accurately mapping clinical glossaries to SNOMED-CT concepts, by means a combination of structural, query expansion and named-based techniques. We have shown that SNOMED-CT is a great source of knowledge to infer synonyms for the medical domain. Results show that an automated query expansion system overcomes the challenge of vocabulary mismatch partially.

Mapping care processes within a hospital: a web-based proposal merging enterprise modelling and ISO normative principles.

PubMed

Staccini, Pascal; Joubert, Michel; Quaranta, Jean-François; Fieschi, Marius

2003-01-01

Today, the economic and regulatory environment are pressuring hospitals and healthcare professionals to account for their results and methods of care delivery. The evaluation of the quality and the safety of care, the traceability of the acts performed and the evaluation of practices are some of the reasons underpinning current interest in clinical and hospital information systems. The structured collection of users' needs and system requirements is fundamental when installing such systems. This stage takes time and is generally misconstrued by caregivers and is of limited efficacy to analysis. We used a modelling technique designed for manufacturing processes (SADT: Structured Analysis and Design Technique). We enhanced the initial model of activity of this method and programmed a web-based tool in an object-oriented environment. This tool makes it possible to extract the data dictionary from the description of a given process and to locate documents (procedures, recommendations, instructions). Aimed at structuring needs and storing information provided by teams directly involved regarding the workings of an institution (or at least part of it), the process mapping approach has an important contribution to make in the analysis of clinical information systems.

Expert networks in CLIPS

NASA Technical Reports Server (NTRS)

Hruska, S. I.; Dalke, A.; Ferguson, J. J.; Lacher, R. C.

1991-01-01

Rule-based expert systems may be structurally and functionally mapped onto a special class of neural networks called expert networks. This mapping lends itself to adaptation of connectionist learning strategies for the expert networks. A parsing algorithm to translate C Language Integrated Production System (CLIPS) rules into a network of interconnected assertion and operation nodes has been developed. The translation of CLIPS rules to an expert network and back again is illustrated. Measures of uncertainty similar to those rules in MYCIN-like systems are introduced into the CLIPS system and techniques for combining and hiring nodes in the network based on rule-firing with these certainty factors in the expert system are presented. Several learning algorithms are under study which automate the process of attaching certainty factors to rules.

Hydrogeologic aspects of the Knippa Gap area in eastern Uvalde and western Medina counties, Texas

USGS Publications Warehouse

Lambert, Rebecca B.; Clark, Allan K.; Pedraza, Diana E.; Morris, Robert R.

2014-01-01

The Edwards aquifer is the primary source of potable water for the San Antonio area in south-central Texas. The Knippa Gap area is a structural low (trough) postulated to channel or restrict flow in the Edwards aquifer in eastern Uvalde and western Medina Counties, Tex. To better understand the function of the Knippa Gap, the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, developed the first detailed surficial geologic map of the Knippa Gap area with data and information obtained from previous investigations and field observations. A simplified version of the detailed geologic map depicting the hydrologic units, faulting, and structural dips of the Knippa Gap area is provided in this fact sheet. The map shows that groundwater flow in the Edwards aquifer is influenced by the Balcones Fault Zone, a structurally complex area of the aquifer that contains relay ramps that have formed in extensional fault systems and allowed for deformational changes along fault blocks. Faulting in southeast Uvalde and southwest Medina Counties has produced relay-ramp structures that dip downgradient to the structural low (trough) of the Knippa Gap.

Integration of QSAR and SAR methods for the mechanistic interpretation of predictive models for carcinogenicity

PubMed Central

Fjodorova, Natalja; Novič, Marjana

2012-01-01

The knowledge-based Toxtree expert system (SAR approach) was integrated with the statistically based counter propagation artificial neural network (CP ANN) model (QSAR approach) to contribute to a better mechanistic understanding of a carcinogenicity model for non-congeneric chemicals using Dragon descriptors and carcinogenic potency for rats as a response. The transparency of the CP ANN algorithm was demonstrated using intrinsic mapping technique specifically Kohonen maps. Chemical structures were represented by Dragon descriptors that express the structural and electronic features of molecules such as their shape and electronic surrounding related to reactivity of molecules. It was illustrated how the descriptors are correlated with particular structural alerts (SAs) for carcinogenicity with recognized mechanistic link to carcinogenic activity. Moreover, the Kohonen mapping technique enables one to examine the separation of carcinogens and non-carcinogens (for rats) within a family of chemicals with a particular SA for carcinogenicity. The mechanistic interpretation of models is important for the evaluation of safety of chemicals. PMID:24688639

Imaging and elemental mapping of biological specimens with a dual-EDS dedicated scanning transmission electron microscope.

PubMed

Wu, J S; Kim, A M; Bleher, R; Myers, B D; Marvin, R G; Inada, H; Nakamura, K; Zhang, X F; Roth, E; Li, S Y; Woodruff, T K; O'Halloran, T V; Dravid, Vinayak P

2013-05-01

A dedicated analytical scanning transmission electron microscope (STEM) with dual energy dispersive spectroscopy (EDS) detectors has been designed for complementary high performance imaging as well as high sensitivity elemental analysis and mapping of biological structures. The performance of this new design, based on a Hitachi HD-2300A model, was evaluated using a variety of biological specimens. With three imaging detectors, both the surface and internal structure of cells can be examined simultaneously. The whole-cell elemental mapping, especially of heavier metal species that have low cross-section for electron energy loss spectroscopy (EELS), can be faithfully obtained. Optimization of STEM imaging conditions is applied to thick sections as well as thin sections of biological cells under low-dose conditions at room and cryogenic temperatures. Such multimodal capabilities applied to soft/biological structures usher a new era for analytical studies in biological systems. Copyright © 2013 Elsevier B.V. All rights reserved.

Mapping the band structure of a surface phononic crystal

NASA Astrophysics Data System (ADS)

Maznev, A. A.; Wright, O. B.; Matsuda, O.

2011-01-01

We map the band structure of surface acoustic modes of a periodic array of copper lines embedded in a SiO2 film on a silicon substrate by means of the laser-induced transient grating technique. A detailed map of the lowest sheet of the ω(k) surface and partial maps of two higher-order sheets are obtained. We discuss the topology of the ω(k) surface and explain how it arises from the Rayleigh and Sezawa modes of the film/substrate system. In the vicinity of the bandgap formed at the Brillouin zone boundary, the first and second dispersion sheets take the form of a saddle and a bowl, respectively, in agreement with a weak perturbation model. The shape of the third dispersion sheet, however, appears to defy expectations based on the perturbation approach. In particular, it contains minima located off the symmetry directions, which implies the existence of zero group velocity modes with an obliquely directed wavevector.

Automated clustering of probe molecules from solvent mapping of protein surfaces: new algorithms applied to hot-spot mapping and structure-based drug design

NASA Astrophysics Data System (ADS)

Lerner, Michael G.; Meagher, Kristin L.; Carlson, Heather A.

2008-10-01

Use of solvent mapping, based on multiple-copy minimization (MCM) techniques, is common in structure-based drug discovery. The minima of small-molecule probes define locations for complementary interactions within a binding pocket. Here, we present improved methods for MCM. In particular, a Jarvis-Patrick (JP) method is outlined for grouping the final locations of minimized probes into physical clusters. This algorithm has been tested through a study of protein-protein interfaces, showing the process to be robust, deterministic, and fast in the mapping of protein "hot spots." Improvements in the initial placement of probe molecules are also described. A final application to HIV-1 protease shows how our automated technique can be used to partition data too complicated to analyze by hand. These new automated methods may be easily and quickly extended to other protein systems, and our clustering methodology may be readily incorporated into other clustering packages.

Identification of areas of recharge and discharge using Landsat-TM satellite imagery and aerial photography mapping techniques

NASA Astrophysics Data System (ADS)

Salama, R. B.; Tapley, I.; Ishii, T.; Hawkes, G.

1994-10-01

Aerial photographs (AP) and Landsat (TM) colour composites were used to map the geomorphology, geology and structures of the Salt River System of Western Australia. Geomorphic features identified are sand plains, dissected etchplain, colluvium, lateritic duricrust and rock outcrops. The hydrogeomorphic units include streams, lakes and playas, palaeochannels and palaeodeltas. The structural features are linear and curvilinear lineaments, ring structures and dolerite dykes. Suture lines control the course of the main river channel. Permeable areas around the circular granitic plutons were found to be the main areas of recharge in the uplands. Recharge was also found to occur in the highly permeable areas of the sandplains. Discharge was shown to be primarily along the main drainage lines, on the edge of the circular sandplains, in depressions and in lakes. The groundwater occurrence and hydrogeological classification of the recharge potential of the different units were used to classify the mapped areas into recharge and discharge zones. The results also show that TM colour composites provide a viable source of data comparable with AP for mapping and delineating areas of recharge and discharge on a regional scale.

Predicting kinetics of polymorphic transformations from structure mapping and coordination analysis

NASA Astrophysics Data System (ADS)

Stevanović, Vladan; Trottier, Ryan; Musgrave, Charles; Therrien, Félix; Holder, Aaron; Graf, Peter

2018-03-01

To extend materials design and discovery into the space of metastable polymorphs, rapid and reliable assessment of transformation kinetics to lower energy structures is essential. Herein we focus on diffusionless polymorphic transformations and investigate routes to assess their kinetics using solely crystallographic arguments. As part of this investigation we developed a general algorithm to map crystal structures onto each other, and ascertain the low-energy (fast-kinetics) transformation pathways between them. Pathways with minimal dissociation of chemical bonds, along which the number of bonds (in ionic systems the first-shell coordination) does not decrease below that in the end structures, are shown to always be the fast-kinetics pathways. These findings enable the rapid assessment of the kinetics of polymorphic transformation and the identification of long-lived metastable structures. The utility is demonstrated on a number of transformations including those between high-pressure SnO2 phases, which lack a detailed atomic-level understanding.

Substrate stiffness-modulated registry phase correlations in cardiomyocytes map structural order to coherent beating

NASA Astrophysics Data System (ADS)

Dasbiswas, K.; Majkut, S.; Discher, D. E.; Safran, Samuel A.

2015-01-01

Recent experiments show that both striation, an indication of the structural registry in muscle fibres, as well as the contractile strains produced by beating cardiac muscle cells can be optimized by substrate stiffness. Here we show theoretically how the substrate rigidity dependence of the registry data can be mapped onto that of the strain measurements. We express the elasticity-mediated structural registry as a phase-order parameter using a statistical physics approach that takes the noise and disorder inherent in biological systems into account. By assuming that structurally registered myofibrils also tend to beat in phase, we explain the observed dependence of both striation and strain measurements of cardiomyocytes on substrate stiffness in a unified manner. The agreement of our ideas with experiment suggests that the correlated beating of heart cells may be limited by the structural order of the myofibrils, which in turn is regulated by their elastic environment.

Evaluation of equipment and methods to map lost circulation zones in geothermal wells

DOE Office of Scientific and Technical Information (OSTI.GOV)

McDonald, W.J.; Leon, P.A.; Pittard, G.

A study and evaluation of methods to locate, characterize, and quantify lost circulation zones are described. Twenty-five methods of mapping and quantifying lost circulation zones were evaluated, including electrical, acoustical, mechanical, radioactive, and optical systems. Each tool studied is described. The structured, numerical evaluation plan, used as the basis for comparing the 25 tools, and the resulting ranking among the tools is presented.

Risk Mapping of Cutaneous Leishmaniasis via a Fuzzy C Means-based Neuro-Fuzzy Inference System

NASA Astrophysics Data System (ADS)

Akhavan, P.; Karimi, M.; Pahlavani, P.

2014-10-01

Finding pathogenic factors and how they are spread in the environment has become a global demand, recently. Cutaneous Leishmaniasis (CL) created by Leishmania is a special parasitic disease which can be passed on to human through phlebotomus of vector-born. Studies show that economic situation, cultural issues, as well as environmental and ecological conditions can affect the prevalence of this disease. In this study, Data Mining is utilized in order to predict CL prevalence rate and obtain a risk map. This case is based on effective environmental parameters on CL and a Neuro-Fuzzy system was also used. Learning capacity of Neuro-Fuzzy systems in neural network on one hand and reasoning power of fuzzy systems on the other, make it very efficient to use. In this research, in order to predict CL prevalence rate, an adaptive Neuro-fuzzy inference system with fuzzy inference structure of fuzzy C Means clustering was applied to determine the initial membership functions. Regarding to high incidence of CL in Ilam province, counties of Ilam, Mehran, and Dehloran have been examined and evaluated. The CL prevalence rate was predicted in 2012 by providing effective environmental map and topography properties including temperature, moisture, annual, rainfall, vegetation and elevation. Results indicate that the model precision with fuzzy C Means clustering structure rises acceptable RMSE values of both training and checking data and support our analyses. Using the proposed data mining technology, the pattern of disease spatial distribution and vulnerable areas become identifiable and the map can be used by experts and decision makers of public health as a useful tool in management and optimal decision-making.

Leveraging medical taxonomies to improve knowledge management within online communities of practice: The knowledge maps system.

PubMed

Stewart, Samuel Alan; Abidi, Syed Sibte Raza

2017-05-01

Online communities of practice contain a wealth of information, stored in the free text of shared communications between community members. The Knowledge Maps (KMaps) system is designed to facilitate Knowledge Translation in online communities through multi-level analyses of the shared messages of these communications. Using state-of-the-art semantic mapping technologies (Metamap) the contents of the messages shared within an online community are mapped to terms from the MeSH medical lexicon, providing a multi-level topic-specific summary of the knowledge being shared within the community. Using the inherent hierarchical structure of the lexicon important insights can be found within the community. The KMaps system was applied to two medical mailing lists, the PPML (archives from 2009-02 to 2013-02) and SURGINET (archives from 2012-01 to 2013-04), identifying 27,924 and 50,597 medical terms respectively. KMaps identified content areas where both communities found interest, specifically around Diseases, 22% and 24% of the total terms, while also identifying field-specific areas that were more popular: SURGINET expressed an interest in Anatomy (14% vs 4%) while the PPML was more interested in Drugs (19% vs 9%). At the level of the individual KMaps identified 6 PPML users and 9 SURGINET users that had noticeably more contributions to the community than their peers, and investigated their personal areas of interest. The KMaps system provides valuable insights into the structure of both communities, identifying topics of interest/shared content areas and defining content-profiles for individual community members. The system provides a valuable addition to the online KT process. Copyright © 2017 Elsevier B.V. All rights reserved.

44 CFR 65.10 - Mapping of areas protected by levee systems.

Code of Federal Regulations, 2010 CFR

2010-10-01

... requirement described in paragraph (b)(1)(i) of this section, may be approved. Appropriate engineering... paragraph (b)(1)(iii) of this section, may be approved. Appropriate engineering analyses demonstrating... are structural parts of the system during operation and design according to sound engineering practice...

Effect of basement structure and salt tectonics on deformation styles along strike: An example from the Kuqa fold-thrust belt, West China

NASA Astrophysics Data System (ADS)

Neng, Yuan; Xie, Huiwen; Yin, Hongwei; Li, Yong; Wang, Wei

2018-04-01

The Kuqa fold-thrust belt (KFTB) has a complex thrust-system geometry and comprises basement-involved thrusts, décollement thrusts, triangle zones, strike-slip faults, transpressional faults, and pop-up structures. These structures, combined with the effects of Paleogene salt tectonics and Paleozoic basement uplift form a complex structural zone trending E-W. Interpretation and comprehensive analysis of recent high-quality seismic data, field observations, boreholes, and gravity data covering the KFTB has been performed to understand the characteristics and mechanisms of the deformation styles along strike. Regional sections, fold-thrust system maps of the surface and the sub-salt layer, salt and basement structure distribution maps have been created, and a comprehensive analysis of thrust systems performed. The results indicate that the thrust-fold system in Paleogene salt range can be divided into five segments from east to west: the Kela-3, Keshen, Dabei, Bozi, and Awate segments. In the easternmost and westernmost parts of the Paleogene salt range, strike-slip faulting and basement-involved thrusting are the dominant deformation styles, as basement uplift and the limits of the Cenozoic evaporite deposit are the main controls on deformation. Salt-core detachment fold-thrust systems coincide with areas of salt tectonics, and pop-up, imbricate, and duplex structures are associated with the main thrust faults in the sub-salt layer. Distribution maps of thrust systems, basement structures, and salt tectonics show that Paleozoic basement uplift controlled the Paleozoic foreland basin morphology and the distribution of Cenozoic salt in the KFTB, and thus had a strong influence on the segmented structural deformation and evolution of the fold-thrust belt. Three types of transfer zone are identified, based on the characteristics of the salt layer and basement uplift, and the effects of these zones on the fault systems are evaluated. Basement uplift and the boundary of the salt deposit generated strike-slip faults in the sub-salt layer and supra-salt layers at the basin boundary (Model A). When changes in the basement occurred within the salt basin, strike-slip faults controlled the deformation styles in the sub-salt layer and shear-zone dominated in the supra-salt layer (Model B). A homogeneous basement and discontinues salt layer formed different accommodation zones in the sub- and supra-salt layers (Model C). In the sub-salt layer the thrusts form imbricate structures on the basal décollement, whereas the supra-salt layer shows overlapping, discontinuous faults and folds with kinds of salt tectonics, and has greater structural variation than the sub-salt layer.

Brief Communication: Mapping river ice using drones and structure from motion

NASA Astrophysics Data System (ADS)

Alfredsen, Knut; Haas, Christian; Tuhtan, Jeffrey A.; Zinke, Peggy

2018-02-01

In cold climate regions, the formation and break-up of river ice is important for river morphology, winter water supply, and riparian and instream ecology as well as for hydraulic engineering. Data on river ice is therefore significant, both to understand river ice processes directly and to assess ice effects on other systems. Ice measurement is complicated due to difficult site access, the inherent complexity of ice formations, and the potential danger involved in carrying out on-ice measurements. Remote sensing methods are therefore highly useful, and data from satellite-based sensors and, increasingly, aerial and terrestrial imagery are currently applied. Access to low cost drone systems with quality cameras and structure from motion software opens up a new possibility for mapping complex ice formations. Through this method, a georeferenced surface model can be built and data on ice thickness, spatial distribution, and volume can be extracted without accessing the ice, and with considerably fewer measurement efforts compared to traditional surveying methods. A methodology applied to ice mapping is outlined here, and examples are shown of how to successfully derive quantitative data on ice processes.

Novel Passive Clearing Methods for the Rapid Production of Optical Transparency in Whole CNS Tissue.

PubMed

Woo, Jiwon; Lee, Eunice Yoojin; Park, Hyo-Suk; Park, Jeong Yoon; Cho, Yong Eun

2018-05-08

Since the development of CLARITY, a bioelectrochemical clearing technique that allows for three-dimensional phenotype mapping within transparent tissues, a multitude of novel clearing methodologies including CUBIC (clear, unobstructed brain imaging cocktails and computational analysis), SWITCH (system-wide control of interaction time and kinetics of chemicals), MAP (magnified analysis of the proteome), and PACT (passive clarity technique), have been established to further expand the existing toolkit for the microscopic analysis of biological tissues. The present study aims to improve upon and optimize the original PACT procedure for an array of intact rodent tissues, including the whole central nervous system (CNS), kidneys, spleen, and whole mouse embryos. Termed psPACT (process-separate PACT) and mPACT (modified PACT), these novel techniques provide highly efficacious means of mapping cell circuitry and visualizing subcellular structures in intact normal and pathological tissues. In the following protocol, we provide a detailed, step-by-step outline on how to achieve maximal tissue clearance with minimal invasion of their structural integrity via psPACT and mPACT.

High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast

PubMed Central

Liachko, Ivan; Youngblood, Rachel A.; Keich, Uri; Dunham, Maitreya J.

2013-01-01

DNA replication origins are necessary for the duplication of genomes. In addition, plasmid-based expression systems require DNA replication origins to maintain plasmids efficiently. The yeast autonomously replicating sequence (ARS) assay has been a valuable tool in dissecting replication origin structure and function. However, the dearth of information on origins in diverse yeasts limits the availability of efficient replication origin modules to only a handful of species and restricts our understanding of origin function and evolution. To enable rapid study of origins, we have developed a sequencing-based suite of methods for comprehensively mapping and characterizing ARSs within a yeast genome. Our approach finely maps genomic inserts capable of supporting plasmid replication and uses massively parallel deep mutational scanning to define molecular determinants of ARS function with single-nucleotide resolution. In addition to providing unprecedented detail into origin structure, our data have allowed us to design short, synthetic DNA sequences that retain maximal ARS function. These methods can be readily applied to understand and modulate ARS function in diverse systems. PMID:23241746

Side-looking airborne radar image interpretation and geological mapping: Problems and results

NASA Technical Reports Server (NTRS)

Scanvic, J. Y.; Soubari, E. H.

1980-01-01

Geological experiments and surveys conducted by BRGM and GDTA members to evaluate interest in SLAR image interpretation are summarized. Two surveys were selected for presentation: Les Vans (Massif central, France) and Guyana (South America). They have permitted a comparison between different types of SLAR: Goodyear, Motorola, JPL, and Vigie in term of lithological and structural applications. On the Les Vans test site conclusions reached concern radiometry, which is better on L-band imagery, polarization, HV being more useful than HH for geological mapping in an L-band system, wavelength and illuminations. Over Guyana, the use of Goodyear X-band SLAR enables satisfactory geological and structural mapping under heavy equatorial forest with cloud cover conditions. A differential program was developed for fracture filtering and image enhancement with a coherent light laser, and significant results were obtained.

The semantic connectivity map: an adapting self-organising knowledge discovery method in data bases. Experience in gastro-oesophageal reflux disease.

PubMed

Buscema, Massimo; Grossi, Enzo

2008-01-01

We describe here a new mapping method able to find out connectivity traces among variables thanks to an artificial adaptive system, the Auto Contractive Map (AutoCM), able to define the strength of the associations of each variable with all the others in a dataset. After the training phase, the weights matrix of the AutoCM represents the map of the main connections between the variables. The example of gastro-oesophageal reflux disease data base is extremely useful to figure out how this new approach can help to re-design the overall structure of factors related to complex and specific diseases description.

Using Knowledge Rules for Pharmacy Mapping

PubMed Central

Shakib, Shaun C.; Che, Chengjian; Lau, Lee Min

2006-01-01

The 3M Health Information Systems (HIS) Healthcare Data Dictionary (HDD) is used to encode and structure patient medication data for the Electronic Health Record (EHR) of the Department of Defense’s (DoD’s) Armed Forces Health Longitudinal Technology Application (AHLTA). HDD Subject Matter Experts (SMEs) are responsible for initial and maintenance mapping of disparate, standalone medication master files from all 100 DoD host sites worldwide to a single concept-based vocabulary, to accomplish semantic interoperability. To achieve higher levels of automation, SMEs began defining a growing set of knowledge rules. These knowledge rules were implemented in a pharmacy mapping tool, which enhanced consistency through automation and increased mapping rate by 29%. PMID:17238709

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fielding, E.J.; Barazangi, M.; Isacks, B.L.

Topography and heterogeneous crustal structure have major effects on the propagation of regional seismic phases. We are collecting topographical, geological, and geophysical datasets for Eurasia into an information system that can be accessed via Internet connections. Now available are digital topography, satellite imagery, and data on sedimentary basins and crustal structure thicknesses. New datasets for Eurasia include maps of depth to Moho beneath Europe and Scandinavia. We have created regularly spaced grids of the crustal thickness values from these maps that can be used to create profiles of crustal structure. These profiles can be compared by an analyst or anmore » automatic program with the crustal seismic phases received along the propagation path to better understand and predict the path effects on phase amplitudes, a key to estimating magnitudes and yields, and for understanding variations in travel-time delays for phases such as Pn, important for improving regional event locations. The gridded data could also be used to model propagation of crustal phases in three dimensions. Digital elevation models, Satellite imagery, Geographic information systems, Lg Propagation, Moho, Geology, Crustal structure, Topographic relief.« less

Structural-geophysical model of the basement complex of the Aden-Red Sea region

NASA Astrophysics Data System (ADS)

Isaev, E. N.

1987-11-01

A relief map of the basement complex underlying the volcanogenic sedimentary cover has been constructed on the basis of composite Bouguer anomaly maps and maps of magnetic anomalies ΔT. Seismic and geological data on the Gulf of Aden and the Red Sea as well as on adjacent areas of Africa and Arabia have also been used. The mid-Red Sea and mid-Aden uplifts (similar to the mid-oceanic ones) as well as the foredeep have been identified. The thickness of cover in the foredeeps is 6-8 km. A regional negative Bouguer anomaly crosses the Aden-Red Sea rift system and includes the area of young volcanism. Intensive linear magnetic anomalies are traceable only within the area of overlap of the rift system and the zone of young volcanism. Rift system apophyses have advanced into the continent and their nature is similar to that of the Afar triangle.

Defining the global health system and systematically mapping its network of actors.

PubMed

Hoffman, Steven J; Cole, Clarke B

2018-04-17

The global health system has faced significant expansion over the past few decades, including continued increase in both the number and diversity of actors operating within it. However, without a stronger understanding of what the global health system encompasses, coordination of actors and resources to address today's global health challenges will not be possible. This study presents a conceptually sound and operational definition of the global health system. Importantly, this definition can be applied in practice to facilitate analysis of the system. The study tested the analytical helpfulness of this definition through a network mapping exercise, whereby the interconnected nature of websites representing actors in the global health system was studied. Using a systematic methodology and related search functions, 203 global health actors were identified, representing the largest and most transparent list of its kind to date. Identified global health actors were characterized and the structure of their social network revealed intriguing patterns in relationships among actors. These findings provide a foundation for future inquiries into the global health system's structure and dynamics that are critical if we are to better coordinate system activities and ensure successful response to our most pressing global health challenges.

An archiving system for Planetary Mapping Data - Availability of derived information and knowledge in Planetary Science!

NASA Astrophysics Data System (ADS)

Nass, A.

2017-12-01

Since the late 1950s a huge number of planetary missions started to explore our solar system. The data resulting from this robotic exploration and remote sensing varies in data type, resolution and target. After data preprocessing, and referencing, the released data are available for the community on different portals and archiving systems, e.g. PDS or PSA. One major usage for these data is mapping, i.e. the extraction and filtering of information by combining and visualizing different kind of base data. Mapping itself is conducted either for mission planning (e.g. identification of landing site) or fundamental research (e.g. reconstruction of surface). The mapping results for mission planning are directly managed within the mission teams. The derived data for fundamental research - also describable as maps, diagrams, or analysis results - are mainly project-based and exclusively available in scientific papers. Within the last year, first steps have been taken to ensure a sustainable use of these derived data by finding an archiving system comparable to the data portals, i.e. reusable, well-documented, and sustainable. For the implementation three tasks are essential. Two tasks have been treated in the past 1. Comparability and interoperability has been made possible by standardized recommendations for visual, textual, and structural description of mapping data. 2. Interoperability between users, information- and graphic systems is possible by templates and guidelines for digital GIS-based mapping. These two steps are adapted e.g. within recent mapping projects for the Dawn mission. The third task hasn`t been implemented thus far: Establishing an easily detectable and accessible platform that holds already acquired information and published mapping results for future investigations or mapping projects. An archive like this would support the scientific community significantly by a constant rise of knowledge and understanding based on recent discussions within Information Science and Management, and Data Warehousing. This contribution describes the necessary map archive components that have to be considered for an efficient establishment and user-oriented accessibility. It will be described how already existing developments could be used, and which components will have to be developed yet.

The Rock Engineering System (RES) applied to landslide susceptibility zonation of the northeastern flank of Etna: methodological approach and results

NASA Astrophysics Data System (ADS)

Apuani, Tiziana; Corazzato, Claudia

2015-04-01

Ground deformations in the northeastern flank of Etna are well known. Despite only a few landslide events have been documented, these have significantly involved and damaged lifelines and buildings. These events are mainly related to the activity of the volcano-tectonic structures and associated seismicity, as in the case of the 2002 reactivation of the Presa landslide during an increased activity of the Pernicana fault system. In order to highlight the areal distribution of potentially unstable slopes based on a detailed, site-specific study of the factors responsible for landslide, and to ultimately contribute to risk management, a landslide susceptibility analysis of the northeastern flank of Etna in the Pernicana area was carried out, and a susceptibility map at 1:10.000 scale was produced, extending over an area of 168 km2. Different methods are proposed in the literature to obtain the regional distribution of potentially unstable slopes, depending on the problem scale, the slope dynamic evolution in the geological context, and the availability of data. Among semi-quantitative approaches, the present research combines the Rock Engineering System (RES) methodology with parameter zonation mapping in a GIS environment. The RES method represents a structured approach to manage a high number of interacting factors involved in the instability problem. A numerically coded, site-specific interaction matrix (IM) analyzes the cause-effect relationship in these factors, and calculates the degree of interactivity of each parameter, normalized by the overall interactivity of the system (weight factor). In the specific Etna case, the considered parameters are: slope attitude, lithotechnical properties (lithology, structural complexity, soil and rock mass quality), land use, tectonic structures, seismic activity (horizontal acceleration) and hydrogeological conditions (groundwater and drainage). Thematic maps are prepared at 1:10.000 scale for each of these parameters, and instability-related numerical ratings are assigned to classes. An instability index map is then produced by assigning, to each areal elementary cell (in our case a 10 m pixel), the sum of the products of each weight factor to the normalized parameter rating coming from each input zonation map. This map is then opportunely classified in landslide susceptibility classes (expressed as a percentage), enabling to discriminate areas prone to instability. Overall, the study area is characterized by a low propensity to slope instability. Few areas have an instability index of more than 45% of the theoretical maximum imposed by the matrix. These are located in the few steep slopes associated with active faults, and strongly depending on the seismic activity. Some other areas correspond to limited outcrops characterized by significantly reduced lithotechnical properties (low shear strength). The produced susceptibility map combines the application of the RES with the parameter zonation, following methodology which had never been applied up to now in in active volcanic environments. The comparison of the results with the ground deformation evidence coming from monitoring networks suggests the validity of the approach.

Structural Mapping and Geomorphology of Ireland's Southwest Continental Shelf Using High Resolution Sonar

NASA Astrophysics Data System (ADS)

Bowden, S.; Wireman, R.

2016-02-01

Bathymetric surveys were conducted on the continental shelf off the southwest coast of County Cork, Ireland by the Marine Institute of Ireland, the Geological Survey of Ireland, and the INFOMAR project. Data were collected from July 2006 through September 2014 using a Kongsberg EM2040 multibeam echosounder aboard the R/Vs Celtic Voyager and Keary, and a Kongsberg EM1002 on the R/V Celtic Explorer. Sonar data were post-processed with CARIS HIPS and SIPS 9.0 to create 2D and 3D bathymetric and backscatter intensity surfaces with a resolution of 1 m. The offshore study site is part of the 286 Ma western Variscian orogenic front and has several massive outcrops, exhibiting 5 to 20 m of near-vertical relief. These outcrops were structurally mapped and relatively aged, and exhibit significant folding, rotation, tilting, and joint systems. Google Earth, ArcGIS, and previous terrestrial studies were used to further analyze how geomorphology is controlled by seafloor composition and structural features. Rock type and age were interpreted by comparing fracture analysis of the joints and fold trends to similar onshore outcrops documented previously, to determine an age of 416-299 Ma for the shelf's outcropping strata and associated structural features. The oldest features observed are regional anticlines and synclines containing Upper Devonian Old Red Sandstone and Lower Carboniferous shales. Within the shale layers are NE-SW plunging parasitic chevron folds. Jointing is observed in both sandstone and shale layers and is superimposed on chevron folding, with cross joints appearing to influence shallow current patterns. Rotation of the regional folds is the youngest structural feature, as both the parasitic folds and joint systems are warped. Our study shows that high resolution sonar is an effective tool for offshore structural mapping and is an important resource for understanding the geomorphology and geologic history of submerged outcrops on continental shelf systems.

Offshore Energy Mapping for Northeast Atlantic and Mediterranean: MARINA PLATFORM project

NASA Astrophysics Data System (ADS)

Kallos, G.; Galanis, G.; Spyrou, C.; Kalogeri, C.; Adam, A.; Athanasiadis, P.

2012-04-01

Deep offshore ocean energy mapping requires detailed modeling of the wind, wave, tidal and ocean circulation estimations. It requires also detailed mapping of the associated extremes. An important issue in such work is the co-generation of energy (generation of wind, wave, tides, currents) in order to design platforms on an efficient way. For example wind and wave fields exhibit significant phase differences and therefore the produced energy from both sources together requires special analysis. The other two sources namely tides and currents have different temporal scales from the previous two. Another important issue is related to the estimation of the environmental frequencies in order to avoid structural problems. These are issues studied at the framework of the FP7 project MARINA PLATFORM. The main objective of the project is to develop deep water structures that can exploit the energy from wind, wave, tidal and ocean current energy sources. In particular, a primary goal will be the establishment of a set of equitable and transparent criteria for the evaluation of multi-purpose platforms for marine renewable energy. Using these criteria, a novel system set of design and optimisation tools will be produced addressing new platform design, component engineering, risk assessment, spatial planning, platform-related grid connection concepts, all focussed on system integration and reducing costs. The University of Athens group is in charge for estimation and mapping of wind, wave, tidal and ocean current resources, estimate available energy potential, map extreme event characteristics and provide any additional environmental parameter required.

Geologic map of Lake Mead and surrounding regions, southern Nevada, southwestern Utah, and northwestern Arizona

USGS Publications Warehouse

Felger, Tracey J.; Beard, Sue

2010-01-01

Regional stratigraphic units and structural features of the Lake Mead region are presented as a 1:250,000 scale map, and as a Geographic Information System database. The map, which was compiled from existing geologic maps of various scales, depicts geologic units, bedding and foliation attitudes, faults and folds. Units and structural features were generalized to highlight the regional stratigraphic and tectonic aspects of the geology of the Lake Mead region. This map was prepared in support of the papers presented in this volume, Special Paper 463, as well as to facilitate future investigations in the region. Stratigraphic units exposed within the area record 1800 million years of geologic history and include Proterozoic crystalline rocks, Paleozoic and Mesozoic sedimentary rocks, Mesozoic plutonic rocks, Cenozoic volcanic and intrusive rocks, sedimentary rocks and surfi cial deposits. Following passive margin sedimentation in the Paleozoic and Mesozoic, late Mesozoic (Sevier) thrusting and Late Cretaceous and early Tertiary compression produced major folding, reverse faulting, and thrust faulting in the Basin and Range, and resulted in regional uplift and monoclinal folding in the Colorado Plateau. Cenozoic extensional deformation, accompanied by sedimentation and volcanism, resulted in large-magnitude high- and low-angle normal faulting and strike-slip faulting in the Basin and Range; on the Colorado Plateau, extension produced north-trending high-angle normal faults. The latest history includes integration of the Colorado River system, dissection, development of alluvial fans, extensive pediment surfaces, and young faulting.

Classification of damage in structural systems using time series analysis and supervised and unsupervised pattern recognition techniques

NASA Astrophysics Data System (ADS)

Omenzetter, Piotr; de Lautour, Oliver R.

2010-04-01

Developed for studying long, periodic records of various measured quantities, time series analysis methods are inherently suited and offer interesting possibilities for Structural Health Monitoring (SHM) applications. However, their use in SHM can still be regarded as an emerging application and deserves more studies. In this research, Autoregressive (AR) models were used to fit experimental acceleration time histories from two experimental structural systems, a 3- storey bookshelf-type laboratory structure and the ASCE Phase II SHM Benchmark Structure, in healthy and several damaged states. The coefficients of the AR models were chosen as damage sensitive features. Preliminary visual inspection of the large, multidimensional sets of AR coefficients to check the presence of clusters corresponding to different damage severities was achieved using Sammon mapping - an efficient nonlinear data compression technique. Systematic classification of damage into states based on the analysis of the AR coefficients was achieved using two supervised classification techniques: Nearest Neighbor Classification (NNC) and Learning Vector Quantization (LVQ), and one unsupervised technique: Self-organizing Maps (SOM). This paper discusses the performance of AR coefficients as damage sensitive features and compares the efficiency of the three classification techniques using experimental data.

Mapping three-dimensional geological features from remotely-sensed images and digital elevation models

NASA Astrophysics Data System (ADS)

Morris, Kevin Peter

Accurate mapping of geological structures is important in numerous applications, ranging from mineral exploration through to hydrogeological modelling. Remotely sensed data can provide synoptic views of study areas enabling mapping of geological units within the area. Structural information may be derived from such data using standard manual photo-geologic interpretation techniques, although these are often inaccurate and incomplete. The aim of this thesis is, therefore, to compile a suite of automated and interactive computer-based analysis routines, designed to help a the user map geological structure. These are examined and integrated in the context of an expert system. The data used in this study include Digital Elevation Model (DEM) and Airborne Thematic Mapper images, both with a spatial resolution of 5m, for a 5 x 5 km area surrounding Llyn Cow lyd, Snowdonia, North Wales. The geology of this area comprises folded and faulted Ordo vician sediments intruded throughout by dolerite sills, providing a stringent test for the automated and semi-automated procedures. The DEM is used to highlight geomorphological features which may represent surface expressions of the sub-surface geology. The DEM is created from digitized contours, for which kriging is found to provide the best interpolation routine, based on a number of quantitative measures. Lambertian shading and the creation of slope and change of slope datasets are shown to provide the most successful enhancement of DEMs, in terms of highlighting a range of key geomorphological features. The digital image data are used to identify rock outcrops as well as lithologically controlled features in the land cover. To this end, a series of standard spectral enhancements of the images is examined. In this respect, the least correlated 3 band composite and a principal component composite are shown to give the best visual discrimination of geological and vegetation cover types. Automatic edge detection (followed by line thinning and extraction) and manual interpretation techniques are used to identify a set of 'geological primitives' (linear or arc features representing lithological boundaries) within these data. Inclusion of the DEM data provides the three-dimensional co-ordinates of these primitives enabling a least-squares fit to be employed to calculate dip and strike values, based, initially, on the assumption of a simple, linearly dipping structural model. A very large number of scene 'primitives' is identified using these procedures, only some of which have geological significance. Knowledge-based rules are therefore used to identify the relevant. For example, rules are developed to identify lake edges, forest boundaries, forest tracks, rock-vegetation boundaries, and areas of geomorphological interest. Confidence in the geological significance of some of the geological primitives is increased where they are found independently in both the DEM and remotely sensed data. The dip and strike values derived in this way are compared to information taken from the published geological map for this area, as well as measurements taken in the field. Many results are shown to correspond closely to those taken from the map and in the field, with an error of < 1°. These data and rules are incorporated into an expert system which, initially, produces a simple model of the geological structure. The system also provides a graphical user interface for manual control and interpretation, where necessary. Although the system currently only allows a relatively simple structural model (linearly dipping with faulting), in the future it will be possible to extend the system to model more complex features, such as anticlines, synclines, thrusts, nappes, and igneous intrusions.

Map of the Pluto System - Children's Edition

NASA Astrophysics Data System (ADS)

Hargitai, H. I.

2016-12-01

Cartography is a powerful tool in the scientific visualization and communication of spatial data. Cartographic visualization for children requires special methods. Although almost all known solid surface bodies in the Solar System have been mapped in detail during the last more than 5 decades, books and publications that target children, tweens and teens never include any of the cartographic results of these missions. We have developed a series of large size planetary maps with the collaboration of planetary scientists, cartographers and graphic artists. The maps are based on photomosaics and DTMs that were redrawn as artwork. This process necessarily involved generalization, interpretation and transformation into the visual language that can be understood by children. In the first project we selected six planetary bodies (Venus, the Moon, Mars, Io, Europa and Titan) and invited six illustrators of childrens'books. Although the overall structure of the maps look similar, the visual approach was significantly different. An important addition was that the maps contained a narrative: different characters - astronauts or "alien-like lifeforms" - interacted with the surface. The map contents were translated into 11 languages and published online at https://childrensmaps.wordpress.com.We report here on the new map of the series. Following the New Horizons' Pluto flyby we have started working on a map that, unlike the others, depicts a planetary system, not only one body. Since only one hemisphere was imaged in high resolution, this map is showing the encounter hemispheres of Pluto and Charon. Projected high resolution image mosaics with informal nomenclature were provided by the New Horizons Team. The graphic artist is Adrienn Gyöngyösi. Our future plan is to produce a book format Children's Atlas of Solar System bodies that makes planetary cartographic and astrogeologic results more accessible for children, and the next generation of planetary scientists among them.

Structural controls on geothermal circulation in Surprise Valley, California: A re-evaluation of the Lake City fault zone

USGS Publications Warehouse

Anne E. Egger,; Glen, Jonathan; McPhee, Darcy K.

2014-01-01

Faults and fractures play an important role in the circulation of geothermal fluids in the crust, and the nature of that role varies according to structural setting and state of stress. As a result, detailed geologic and geophysical mapping that relates thermal springs to known structural features is essential to modeling geothermal systems. Published maps of Surprise Valley in northeastern California suggest that the “Lake City fault” or “Lake City fault zone” is a significant structural feature, cutting obliquely across the basin and connecting thermal springs across the valley. Newly acquired geophysical data (audio-magnetotelluric, gravity, and magnetic), combined with existing geochemical and geological data, suggest otherwise. We examine potential field profiles and resistivity models that cross the mapped Lake City fault zone. While there are numerous geophysical anomalies that suggest subsurface structures, they mostly do not coincide with the mapped traces of the Lake City fault zone, nor do they show a consistent signature in gravity, magnetics, or resistivities that would suggest a through-going fault that would promote connectivity through lateral fluid flow. Instead of a single, continuous fault, we propose the presence of a deformation zone associated with the growth of the range-front Surprise Valley fault. The implication for geothermal circulation is that this is a zone of enhanced porosity but lacks length-wise connectivity that could conduct fluids across the valley. Thermal fluid circulation is most likely controlled primarily by interactions between N-S–trending normal faults.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bower, J.C.; Burford, M.J.; Downing, T.R.

The Integrated Baseline System (IBS) is an emergency management planning and analysis tool that is being developed under the direction of the US Army Nuclear and Chemical Agency (USANCA). The IBS Data Management Guide provides the background, as well as the operations and procedures needed to generate and maintain a site-specific map database. Data and system managers use this guide to manage the data files and database that support the administrative, user-environment, database management, and operational capabilities of the IBS. This document provides a description of the data files and structures necessary for running the IBS software and using themore » site map database.« less

The Price of Precision: Large-Scale Mapping of Forest Structure and Biomass Using Airborne Lidar

NASA Astrophysics Data System (ADS)

Dubayah, R.

2015-12-01

Lidar remote sensing provides one of the best means for acquiring detailed information on forest structure. However, its application over large areas has been limited largely because of its expense. Nonetheless, extant data exist over many states in the U.S., funded largely by state and federal consortia and mainly for infrastructure, emergency response, flood plain and coastal mapping. These lidar data are almost always acquired in leaf-off seasons, and until recently, usually with low point count densities. Even with these limitations, they provide unprecedented wall-to-wall mappings that enable development of appropriate methodologies for large-scale deployment of lidar. In this talk we summarize our research and lessons learned in deriving forest structure over regional areas as part of NASA's Carbon Monitoring System (CMS). We focus on two areas: the entire state of Maryland and Sonoma County, California. The Maryland effort used low density, leaf-off data acquired by each county in varying epochs, while the on-going Sonoma work employs state-of-the-art, high density, wall-to-wall, leaf-on lidar data. In each area we combine these lidar coverages with high-resolution multispectral imagery from the National Agricultural Imagery Program (NAIP) and in situ plot data to produce maps of canopy height, tree cover and biomass, and compare our results against FIA plot data and national biomass maps. Our work demonstrates that large-scale mapping of forest structure at high spatial resolution is achievable but products may be complex to produce and validate over large areas. Furthermore, fundamental issues involving statistical approaches, plot types and sizes, geolocation, modeling scales, allometry, and even the definitions of "forest" and "non-forest" must be approached carefully. Ultimately, determining the "price of precision", that is, does the value of wall-to-wall forest structure data justify their expense, should consider not only carbon market applications, but the other ways the underlying lidar data may be used.

A map of abstract relational knowledge in the human hippocampal–entorhinal cortex

PubMed Central

Garvert, Mona M; Dolan, Raymond J; Behrens, Timothy EJ

2017-01-01

The hippocampal–entorhinal system encodes a map of space that guides spatial navigation. Goal-directed behaviour outside of spatial navigation similarly requires a representation of abstract forms of relational knowledge. This information relies on the same neural system, but it is not known whether the organisational principles governing continuous maps may extend to the implicit encoding of discrete, non-spatial graphs. Here, we show that the human hippocampal–entorhinal system can represent relationships between objects using a metric that depends on associative strength. We reconstruct a map-like knowledge structure directly from a hippocampal–entorhinal functional magnetic resonance imaging adaptation signal in a situation where relationships are non-spatial rather than spatial, discrete rather than continuous, and unavailable to conscious awareness. Notably, the measure that best predicted a behavioural signature of implicit knowledge and blood oxygen level-dependent adaptation was a weighted sum of future states, akin to the successor representation that has been proposed to account for place and grid-cell firing patterns. DOI: http://dx.doi.org/10.7554/eLife.17086.001 PMID:28448253

Image processing of HCMM-satellite thermal images for superposition with other satellite imagery and topographic and thematic maps. [Upper Rhine River Valley and surrounding highlands Switzerland, Germany, and France

NASA Technical Reports Server (NTRS)

Gossmann, H.; Haberaecker, P. (Principal Investigator)

1980-01-01

The southwestern part of Central Europe between Basal and Frankfurt was used in a study to determine the accuracy with which a regionally bounded HCMM scene could be rectified with respect to a preassigned coordinate system. The scale to which excerpts from HCMM data can be sensibly enlarged and the question of how large natural structures must be in order to be identified in a satellite thermal image with the given resolution were also examined. Relief and forest and population distribution maps and a land use map derived from LANDSAT data were digitalized and adapted to a common reference system and then combined in a single multichannel data system. The control points for geometrical rectification were determined using the coordinates of the reference system. The multichannel scene was evaluated in several different manners such as the correlation of surface temperature and relief, surface temperature and land use, or surface temperature and built up areas.

Petroleum system of Northwest Java basin based on gravity data analysis

NASA Astrophysics Data System (ADS)

Widianto, E.

2018-01-01

Energy management in the upstream oil and gas sector becomes very important for the country’s energy security. The renewal of energy resources and reserves becomes necessary and is a must. In the oil and gas industry, gravity data is usually used only for regional surveys, but with the development of instrumentation technology and gravity software development, this method can be used for assessing oil and gas survey stages from exploration to production. This study was conducted to evaluate aspects of petroleum system and exploration play concept in the part of Northwest Java Basin, covering source rock deposition regions (source kitchen area, migration direction), development of reservoirs, structural and stratigraphic trap, based on gravity data. This study uses data from Bouguer gravity anomaly map by filtering process to produce a residual map depicting sedimentation basin configuration. The mapping generated 20 sedimentary basins in Java Island with the total hydrocarbon resources of 113 BBOE (Billion Barrel of Oil Equivalent). The petroleum system analysis was conducted in the Northwest Basin section. The final map produced illustrates the condition of petroleum system and play concept that can be used as exploration direction, expectedly reducing the risk of drilling failure.

Lessons in modern digital field geology: Open source software, 3D techniques, and the new world of digital mapping

NASA Astrophysics Data System (ADS)

Pavlis, Terry; Hurtado, Jose; Langford, Richard; Serpa, Laura

2014-05-01

Although many geologists refuse to admit it, it is time to put paper-based geologic mapping into the historical archives and move to the full potential of digital mapping techniques. For our group, flat map digital geologic mapping is now a routine operation in both research and instruction. Several software options are available, and basic proficiency with the software can be learned in a few hours of instruction and practice. The first practical field GIS software, ArcPad, remains a viable, stable option on Windows-based systems. However, the vendor seems to be moving away from ArcPad in favor of mobile software solutions that are difficult to implement without GIS specialists. Thus, we have pursued a second software option based on the open source program QGIS. Our QGIS system uses the same shapefile-centric data structure as our ArcPad system, including similar pop-up data entry forms and generic graphics for easy data management in the field. The advantage of QGIS is that the same software runs on virtually all common platforms except iOS, although the Android version remains unstable as of this writing. A third software option we are experimenting with for flat map-based field work is Fieldmove, a derivative of the 3D-capable program Move developed by Midland Valley. Our initial experiments with Fieldmove are positive, particularly with the new, inexpensive (<300Euros) Windows tablets. However, the lack of flexibility in data structure makes for cumbersome workflows when trying to interface our existing shapefile-centric data structures to Move. Nonetheless, in spring 2014 we will experiment with full-3D immersion in the field using the full Move software package in combination with ground based LiDAR and photogrammetry. One new workflow suggested by our initial experiments is that field geologists should consider using photogrammetry software to capture 3D visualizations of key outcrops. This process is now straightforward in several software packages, and it affords a previously unheard of potential for communicating the complexity of key exposures. For example, in studies of metamorphic structures we often search for days to find "Rosetta Stone" outcrops that display key geometric relationships. While conventional photographs rarely can capture the essence of the field exposure, capturing a true 3D representation of the exposure with multiple photos from many orientations can solve this communication problem. As spatial databases evolve these 3D models should be readily importable into the database.

Water Induced Hazard Mapping in Nepal: A Case Study of East Rapti River Basin

NASA Astrophysics Data System (ADS)

Neupane, N.

2010-12-01

This paper presents illustration on typical water induced hazard mapping of East Rapti River Basin under the DWIDP, GON. The basin covers an area of 2398 sq km. The methodology includes making of base map of water induced disaster in the basin. Landslide hazard maps were prepared by SINMAP approach. Debris flow hazard maps were prepared by considering geology, slope, and saturation. Flood hazard maps were prepared by using two approaches: HEC-RAS and Satellite Imagery Interpretation. The composite water-induced hazard maps were produced by compiling the hazards rendered by landslide, debris flow, and flood. The monsoon average rainfall in the basin is 1907 mm whereas maximum 24 hours precipitation is 456.8 mm. The peak discharge of the Rapati River in the year of 1993 at station was 1220 cu m/sec. This discharge nearly corresponds to the discharge of 100-year return period. The landslides, floods, and debris flows triggered by the heavy rain of July 1993 claimed 265 lives, affected 148516 people, and damaged 1500 houses in the basin. The field investigation and integrated GIS interpretation showed that the very high and high landslide hazard zones collectively cover 38.38% and debris flow hazard zone constitutes 6.58%. High flood hazard zone occupies 4.28% area of the watershed. Mitigation measures are recommendated according to Integrated Watershed Management Approach under which the non-structural and structural measures are proposed. The non-structural measures includes: disaster management training, formulation of evacuation system (arrangement of information plan about disaster), agriculture management practices, protection of water sources, slope protections and removal of excessive bed load from the river channel. Similarly, structural measures such as dike, spur, rehabilitation of existing preventive measures and river training at some locations are recommendated. The major factors that have contributed to induce high incidences of various types of mass movements and inundation in the basin are rock and soil properties, prolonged and high-intensity rainfall, steep topography and various anthropogenic factors.

Personnel controlling system principles and structural goals of the industrial companies

NASA Astrophysics Data System (ADS)

Pimenova, Anna; Kuzmina, Svetlana; Zavialov, Kirill; Ushakova, Elena

2017-10-01

This article peruses the basics of the controlling system, its functions and structural phases of the industrial companies. The personnel controlling of the industrial companies (for examples transportation or energy company) is examined in detail. Controlling system occurs applicable within various activity fields of an enterprise. Modern approaches of the domestic scholars are inspected. Goals and focuses of the personnel controlling system of the industrial companies have been analyzed. Foremost it occurs crucial to analyze and define the entire labor process to figure out primary requirements issued to the labor and employees. In article is offered the road map to follow to structure the purposes of all management system of personnel in the specific organization - in the transportation or energy company or other enterprises.

J-SHIS - an integrated system for knowing seismic hazard information in Japan

NASA Astrophysics Data System (ADS)

Azuma, H.; Fujiwara, H.; Kawai, S.; Hao, K. X.; Morikawa, N.

2015-12-01

An integrated system of Japan seismic hazard information station (J-SHIS) was established in 2005 for issuing and exchanging information of the National Seismic Hazard Maps for Japan that are based on seismic hazard assessment (SHA). A simplified app, also named J-SHIS, for smartphones is popularly used in Japan based on the integrated system of http://www.j-shis.bosai.go.jp/map/?lang=en. "Smartphone tells hazard" is realized on a cellphone, a tablet and/or a PC. At a given spot, the comprehensive information of SHA map can be easily obtained as below: 1) A SHA probability at given intensity (JMA=5-, 5+, 6-, 6+) within 30 years. 2) A site amplification factor varies within 0.5 ~ 3.0 and expectation is 1 based on surface geology map information. 3) A depth of seismic basement down to ~3,000m based on deeper borehole and geological structure. 4) Scenario earthquake maps: By choosing an active fault, one got the average case for different parameters of the modeling. Then choose a case, you got the shaking map of intensity with color scale. "Seismic Hazard Karte tells more hazard" is another app based on website of http://www.j-shis.bosai.go.jp/labs/karte/. (1) For every mesh of 250m x 250m, professional service SHA information is provided over national-world. (2) With five ranks for eight items, comprehensive SHA information could be delivered. (3) Site amplification factor with an average index is given. (4) Deeper geologic structure modeling is provided with borehole profiling. (5) A SHA probability is assessed within 30 and/or 50 years for the given site. (6) Seismic Hazard curves are given for earthquake sources from inland active fault, subduction zone, undetermined and their summarization. (7) The JMA seismic intensities are assessed in long-term averaged periods of 500-years to ~100,000 years. The app of J-SHIS can be downloaded freely from http://www.j-shis.bosai.go.jp/app-jshis.

A cotton Raf-like MAP3K gene, GhMAP3K40, mediates reduced tolerance to biotic and abiotic stress in Nicotiana benthamiana by negatively regulating growth and development.

PubMed

Chen, Xiaobo; Wang, Ji; Zhu, Ming; Jia, Haihong; Liu, Dongdong; Hao, Lili; Guo, Xingqi

2015-11-01

Mitogen-activated protein kinase (MAPK) cascades mediate various responses in plants. As the top component, MAP3Ks deserve more attention; however, little is known about the role of MAP3Ks, especially in cotton, a worldwide economic crop. In this study, a gene encoding a putative Raf-like MAP3K, GhMAP3K40, was isolated. GhMAP3K40 expression was induced by stress and multiple signal molecules. The plants overexpressing GhMAP3K40 had an enhanced tolerance to drought and salt stress at the germination stage. However, at the seedling stage, the transgenic plants suffered more severe damage after drought, exposure to pathogens and oxidative stress. The defence-related genes and the antioxidant system were activated in transgenic palnts, suggesting that GhMAP3K40 positively regulate the defence response. The transgenic plants were less able to prevent pathogenic invasion, which was due to defects in the cell structure of the leaves. The root system of the control plants were stronger compared with the transgenic plants. These results indicated a negative role of GhMAP3K40 in growth and development and GhMAP3K40 possibly caused the defects by down-regulating the lignin biosynthesis. Overall, these results suggest that GhMAP3K40 may positively regulate defence response but cause reduced tolerance to biotic and abiotic stress by negatively regulating growth and development. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Dynamic resource allocation in a hierarchical multiprocessor system: A preliminary study

NASA Technical Reports Server (NTRS)

Ngai, Tin-Fook

1986-01-01

An integrated system approach to dynamic resource allocation is proposed. Some of the problems in dynamic resource allocation and the relationship of these problems to system structures are examined. A general dynamic resource allocation scheme is presented. A hierarchial system architecture which dynamically maps between processor structure and programs at multiple levels of instantiations is described. Simulation experiments were conducted to study dynamic resource allocation on the proposed system. Preliminary evaluation based on simple dynamic resource allocation algorithms indicates that with the proposed system approach, the complexity of dynamic resource management could be significantly reduced while achieving reasonable effective dynamic resource allocation.

Bifurcation and Fractal of the Coupled Logistic Map

NASA Astrophysics Data System (ADS)

Wang, Xingyuan; Luo, Chao

The nature of the fixed points of the coupled Logistic map is researched, and the boundary equation of the first bifurcation of the coupled Logistic map in the parameter space is given out. Using the quantitative criterion and rule of system chaos, i.e., phase graph, bifurcation graph, power spectra, the computation of the fractal dimension, and the Lyapunov exponent, the paper reveals the general characteristics of the coupled Logistic map transforming from regularity to chaos, the following conclusions are shown: (1) chaotic patterns of the coupled Logistic map may emerge out of double-periodic bifurcation and Hopf bifurcation, respectively; (2) during the process of double-period bifurcation, the system exhibits self-similarity and scale transform invariability in both the parameter space and the phase space. From the research of the attraction basin and Mandelbrot-Julia set of the coupled Logistic map, the following conclusions are indicated: (1) the boundary between periodic and quasiperiodic regions is fractal, and that indicates the impossibility to predict the moving result of the points in the phase plane; (2) the structures of the Mandelbrot-Julia sets are determined by the control parameters, and their boundaries have the fractal characteristic.

Statistical characterization of discrete conservative systems: The web map

NASA Astrophysics Data System (ADS)

Ruiz, Guiomar; Tirnakli, Ugur; Borges, Ernesto P.; Tsallis, Constantino

2017-10-01

We numerically study the two-dimensional, area preserving, web map. When the map is governed by ergodic behavior, it is, as expected, correctly described by Boltzmann-Gibbs statistics, based on the additive entropic functional SB G[p (x ) ] =-k ∫d x p (x ) lnp (x ) . In contrast, possible ergodicity breakdown and transitory sticky dynamical behavior drag the map into the realm of generalized q statistics, based on the nonadditive entropic functional Sq[p (x ) ] =k 1/-∫d x [p(x ) ] q q -1 (q ∈R ;S1=SB G ). We statistically describe the system (probability distribution of the sum of successive iterates, sensitivity to the initial condition, and entropy production per unit time) for typical values of the parameter that controls the ergodicity of the map. For small (large) values of the external parameter K , we observe q -Gaussian distributions with q =1.935 ⋯ (Gaussian distributions), like for the standard map. In contrast, for intermediate values of K , we observe a different scenario, due to the fractal structure of the trajectories embedded in the chaotic sea. Long-standing non-Gaussian distributions are characterized in terms of the kurtosis and the box-counting dimension of chaotic sea.

Neotectonics and geomorphic evolution of the northwestern arm of the Yellowstone Tectonic Parabola: Controls on intra-cratonic extensional regimes, southwest Montana

USGS Publications Warehouse

Ruleman, Chester A.; Larsen, Mort; Stickney, Michael C.

2014-01-01

The catastrophic Hebgen Lake earthquake of 18 August 1959 (MW 7.3) led many geoscientists to develop new methods to better understand active tectonics in extensional tectonic regimes that address seismic hazards. The Madison Range fault system and adjacent Hebgen Lake–Red Canyon fault system provide an intermountain active tectonic analog for regional analyses of extensional crustal deformation. The Madison Range fault system comprises fault zones (~100 km in length) that have multiple salients and embayments marked by preexisting structures exposed in the footwall. Quaternary tectonic activity rates differ along the length of the fault system, with less displacement to the north. Within the Hebgen Lake basin, the 1959 earthquake is the latest slip event in the Hebgen Lake–Red Canyon fault system and southern Madison Range fault system. Geomorphic and paleoseismic investigations indicate previous faulting events on both fault systems. Surficial geologic mapping and historic seismicity support a coseismic structural linkage between the Madison Range and Hebgen Lake–Red Canyon fault systems. On this trip, we will look at Quaternary surface ruptures that characterize prehistoric earthquake magnitudes. The one-day field trip begins and ends in Bozeman, and includes an overview of the active tectonics within the Madison Valley and Hebgen Lake basin, southwestern Montana. We will also review geologic evidence, which includes new geologic maps and geomorphic analyses that demonstrate preexisting structural controls on surface rupture patterns along the Madison Range and Hebgen Lake–Red Canyon fault systems.

Structural Control and Groundwater Flow in the Nubian Aquifer

NASA Astrophysics Data System (ADS)

Fathy, K.; Sultan, M.; Ahmed, M.; Save, H.; Emil, M. K.; Elkaliouby, B.

2017-12-01

An integrated research approach (remote sensing, field, geophysics) was conducted to investigate the structural control on groundwater flow in large aquifers using the less studied Nubian Sandstone Aquifer System (NSAS) of NE Africa as a test site. The aquifer extends over 2.2 x 106 km2 in Egypt, Libya, Chad, and Sudan and consists of thick (> 3 kms), water-bearing, Paleozoic and Mesozoic sandstone with intercalations of Tertiary shale and clay. It is subdivided into three sub-basins (Northern Sudan Platform [NSP], Dakhla [DAS], and Kufra) that are separated by basement uplifts (e.g., E-W trending Uweinat-Aswan uplift that separates DAS from the NSP). Aquifer recharge occurs in the south (NSP and southern Kufra) where the aquifer is unconfined and precipitation is high (Average Annual Precipitation [AAP]: 117 mm/yr.) and discharge is concentrated in the north (DAS and northern Kufra). Our approach is a three-fold exercise. Firstly, we compared GOCE-based Global Geopotential Models (GGMs) to terrestrial gravity anomalies for 21262 sites to select the optimum model for deriving Bouguer gravity anomalies. Secondly, structures and uplifts were mapped using hill shade images and their extension in the subsurface were mapped using the Eigen_6C4 model-derived Bouguer anomalies and their Tilt Derivative products (TDR). Thirdly, hydrological analysis was conducted using GRACE CSR 1° x 1° mascon solutions to investigate the mass variations in relation to the mapped structures. Our findings include: (1) The Eigen-6C4 is the optimum model having the lowest deviation (9.122 mGal) from the terrestrial gravity anomalies; (2) the surface expressions of structures matched fairly well with their postulated extensions in the subsurface; (3) identified fault systems include: Red Sea rift-related N-S to NW-SE trending grabens formed by reactivating basement structures during Red Sea opening and Syrian arc-related NE-SW trending dextral shear systems; (4) TWS patterns are uniform throughout the length (hundreds of kilometers) of the identified shear systems but are dissimilar from those extracted in areas proximal to, but outside of, the shear zones; and (5) basement uplifts impede or redirect the groundwater flow.

3-Dimensional Geologic Modeling Applied to the Structural Characterization of Geothermal Systems: Astor Pass, Nevada, USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siler, Drew L; Faulds, James E; Mayhew, Brett

2013-04-16

Geothermal systems in the Great Basin, USA, are controlled by a variety of fault intersection and fault interaction areas. Understanding the specific geometry of the structures most conducive to broad-scale geothermal circulation is crucial to both the mitigation of the costs of geothermal exploration (especially drilling) and to the identification of geothermal systems that have no surface expression (blind systems). 3-dimensional geologic modeling is a tool that can elucidate the specific stratigraphic intervals and structural geometries that host geothermal reservoirs. Astor Pass, NV USA lies just beyond the northern extent of the dextral Pyramid Lake fault zone near the boundarymore » between two distinct structural domains, the Walker Lane and the Basin and Range, and exhibits characteristics of each setting. Both northwest-striking, left-stepping dextral faults of the Walker Lane and kinematically linked northerly striking normal faults associated with the Basin and Range are present. Previous studies at Astor Pass identified a blind geothermal system controlled by the intersection of west-northwest and north-northwest striking dextral-normal faults. Wells drilled into the southwestern quadrant of the fault intersection yielded 94°C fluids, with geothermometers suggesting a maximum reservoir temperature of 130°C. A 3-dimensional model was constructed based on detailed geologic maps and cross-sections, 2-dimensional seismic data, and petrologic analysis of the cuttings from three wells in order to further constrain the structural setting. The model reveals the specific geometry of the fault interaction area at a level of detail beyond what geologic maps and cross-sections can provide.« less

Geological evaluation of Radarsat data: Plans and preliminary results

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berger, Z.; Irving, R.E.L.; Thompson, M.D.

1996-01-01

Radarsat, the Canadian synthetic aperture radar satellite to be launched in September 1995, is anticipated to become the prime active imaging system for geological mapping of tropical areas and other humid areas. Radarsat will provide adequate spatial resolution, stereo capabilities and relatively low incidence angles to reduce the geometric distortions of geological structures due to layover effects. As part of the Radarsat User Development Program of the Canadian Space Agency, it has been proposed to conduct an evaluation program of the terrain surface mapping capabilities of Radarsat and its application to hydrocarbon exploration, coal development, geological hazard mapping and environmentalmore » monitoring. The evaluation program will be carried out in three test sites: (1) Western Canadian Basin (a mature exploration area in Alberta with a range of geology/topography), (2) Andean Foothills (frontier tropical sedimentary basins in Columbia representing prototype active exploration areas), and (3) Philippine volcanic region (frontier tropical earthquake-prone geohazard area of Philippine wrench fault system on Luzon Island, in a typical structural setting of the sedimentary basins of southeast Asia). The paper will include the project plans, illustrate the structural setting and the relationships between surface and subsurface structures for each of the three test sites, and present a preliminary evaluation of simulated and actual Radarsat data as compared to data from ERS-1, airborne SAR, Landsat Thematic Mapper and SPOT. The preliminary application of Radarsat for exploration will be discussed.« less

Geological evaluation of Radarsat data: Plans and preliminary results

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berger, Z.; Irving, R.E.L.; Thompson, M.D.

1996-12-31

Radarsat, the Canadian synthetic aperture radar satellite to be launched in September 1995, is anticipated to become the prime active imaging system for geological mapping of tropical areas and other humid areas. Radarsat will provide adequate spatial resolution, stereo capabilities and relatively low incidence angles to reduce the geometric distortions of geological structures due to layover effects. As part of the Radarsat User Development Program of the Canadian Space Agency, it has been proposed to conduct an evaluation program of the terrain surface mapping capabilities of Radarsat and its application to hydrocarbon exploration, coal development, geological hazard mapping and environmentalmore » monitoring. The evaluation program will be carried out in three test sites: (1) Western Canadian Basin (a mature exploration area in Alberta with a range of geology/topography), (2) Andean Foothills (frontier tropical sedimentary basins in Columbia representing prototype active exploration areas), and (3) Philippine volcanic region (frontier tropical earthquake-prone geohazard area of Philippine wrench fault system on Luzon Island, in a typical structural setting of the sedimentary basins of southeast Asia). The paper will include the project plans, illustrate the structural setting and the relationships between surface and subsurface structures for each of the three test sites, and present a preliminary evaluation of simulated and actual Radarsat data as compared to data from ERS-1, airborne SAR, Landsat Thematic Mapper and SPOT. The preliminary application of Radarsat for exploration will be discussed.« less

Effects of mistuning and matrix structure on the topology of frequency response curves

NASA Technical Reports Server (NTRS)

Afolabi, Dare

1989-01-01

The stability of a frequency response curve under mild perturbations of the system's matrix is investigated. Using recent developments in the theory of singularities of differentiable maps, it is shown that the stability of a response curve depends on the structure of the system's matrix. In particular, the frequency response curves of a cylic system are shown to be unstable. Consequently, slight parameter variations engendered by mistuning will induce a significant difference in the topology of the forced response curves, if the mistuning transformation crosses the bifurcation set.

Color image cryptosystem using Fresnel diffraction and phase modulation in an expanded fractional Fourier transform domain

NASA Astrophysics Data System (ADS)

Chen, Hang; Liu, Zhengjun; Chen, Qi; Blondel, Walter; Varis, Pierre

2018-05-01

In this letter, what we believe is a new technique for optical color image encryption by using Fresnel diffraction and a phase modulation in an extended fractional Fourier transform domain is proposed. Different from the RGB component separation based method, the color image is converted into one component by improved Chirikov mapping. The encryption system is addressed with Fresnel diffraction and phase modulation. A pair of lenses is placed into the fractional Fourier transform system for the modulation of beam propagation. The structure parameters of the optical system and parameters in Chirikov mapping serve as extra keys. Some numerical simulations are given to test the validity of the proposed cryptosystem.

Coordinated Optimization of Visual Cortical Maps (I) Symmetry-based Analysis

PubMed Central

Reichl, Lars; Heide, Dominik; Löwel, Siegrid; Crowley, Justin C.; Kaschube, Matthias; Wolf, Fred

2012-01-01

In the primary visual cortex of primates and carnivores, functional architecture can be characterized by maps of various stimulus features such as orientation preference (OP), ocular dominance (OD), and spatial frequency. It is a long-standing question in theoretical neuroscience whether the observed maps should be interpreted as optima of a specific energy functional that summarizes the design principles of cortical functional architecture. A rigorous evaluation of this optimization hypothesis is particularly demanded by recent evidence that the functional architecture of orientation columns precisely follows species invariant quantitative laws. Because it would be desirable to infer the form of such an optimization principle from the biological data, the optimization approach to explain cortical functional architecture raises the following questions: i) What are the genuine ground states of candidate energy functionals and how can they be calculated with precision and rigor? ii) How do differences in candidate optimization principles impact on the predicted map structure and conversely what can be learned about a hypothetical underlying optimization principle from observations on map structure? iii) Is there a way to analyze the coordinated organization of cortical maps predicted by optimization principles in general? To answer these questions we developed a general dynamical systems approach to the combined optimization of visual cortical maps of OP and another scalar feature such as OD or spatial frequency preference. From basic symmetry assumptions we obtain a comprehensive phenomenological classification of possible inter-map coupling energies and examine representative examples. We show that each individual coupling energy leads to a different class of OP solutions with different correlations among the maps such that inferences about the optimization principle from map layout appear viable. We systematically assess whether quantitative laws resembling experimental observations can result from the coordinated optimization of orientation columns with other feature maps. PMID:23144599

Selecting healthcare information systems provided by third-party vendors: a mind map beyond the manuals.

PubMed

Gortzis, Lefteris G

2010-01-01

The selection of a new healthcare information system (HIS) has always been a daunting process for clinicians, health care providers and policy makers. The objective of this study is to present the lessons learned and the main findings from several relevant case studies to support this process. Data were collected by retrospectively reviewing the summative results of three well-established systems, acquiring feedback from two E.U. projects, and conducting semi-structured interviews with a number of collaborators involved in electronic healthcare interventions. Selection issues were identified and classified into the following five categories: (i) data creation, (ii) data management, (iii) data sharing, (iv) data presentation and (v) modules management. A mind map was also structured to provide a more manageable list of issues concerning the most common electronic clinical technologies (e-CT). The vendor manual is intended as an overview of the merchandise e-CT and therefore has limited potential in supporting effectively the selection process of a new HIS. The present classification and the mind map - based on lessons learned - provide a ready-to-use toolkit for supporting the HIS selection process when healthcare organisations are unable to employ research development groups to lay the groundwork for building a new HIS from scratch.

Fine Structure Genetic and Physical Map of the Gene 3 to 10 Region of the Bacteriophage P22 Chromosome

PubMed Central

Casjens, S.; Eppler, K.; Sampson, L.; Parr, R.; Wyckoff, E.

1991-01-01

The mechanism by which dsDNA is packaged by viruses is not yet understood in any system. Bacteriophage P22 has been a productive system in which to study the molecular genetics of virus particle assembly and DNA packaging. Only five phage encoded proteins, the products of genes 3, 2, 1, 8 and 5, are required for packaging the virus chromosome inside the coat protein shell. We report here the construction of a detailed genetic and physical map of these genes, the neighboring gene 4 and a portion of gene 10, in which 289 conditional lethal amber, opal, temperature sensitive and cold sensitive mutations are mapped into 44 small (several hundred base pair) intervals of known sequence. Knowledge of missense mutant phenotypes and information on the location of these mutations allows us to begin the assignment of partial protein functions to portions of these genes. The map and mapping strains will be of use in the further genetic dissection of the P22 DNA packaging and prohead assembly processes. PMID:2029965

Spatial Collective Intelligence? credibility, accuracy, and Volunteered Geographic Information

PubMed Central

Spielman, Seth E.

2014-01-01

Collective intelligence is the idea that under the right circumstances collections of individuals are smarter than even the smartest individuals in the group (Suroweiki 2004), that is a group has an “intelligence” that is independent of the intelligence of its members. The ideology of collective intelligence undergirds much of the enthusiasm about the use of “volunteered” or crowdsourced geographic information. Literature from a variety of fields makes clear that not all groups possess collective intelligence, this paper identifies four pre-conditions for the emergence of collective intelligence and then examine the extent to which collectively generated mapping systems satisfy these conditions. However, the “intelligence” collectively generated maps is hard to assess because there are two difficult to reconcile perspectives on map quality- the credibility perspective and the accuracy perspective. Much of the current literature on user generated maps focuses on assessing the quality of individual contributions. However, because user generated maps are complex social systems and because the quality of a contribution is difficult to assess this strategy may not yield an “intelligent” end product. The existing literature on collective intelligence suggests that the structure of groups more important that the intelligence of group members. Applying this idea to user generated suggests that systems should be designed to foster conditions known to produce collective intelligence rather than privileging particular contributions/contributors. The paper concludes with some design recommendations and by considering the implications of collectively generated maps for both expert knowledge and traditional state sponsored mapping programs. PMID:25419184

Airborne EM survey in volcanoes : Application to a volcanic hazards assessment

NASA Astrophysics Data System (ADS)

Mogi, T.

2010-12-01

Airborne electromagnetics (AEM) is a useful tool for investigating subsurface structures of volcanoes because it can survey large areas involving inaccessible areas. Disadvantages include lower accuracy and limited depth of investigation. AEM has been widely used in mineral exploration in frontier areas, and have been applying to engineering and environmental fields, particularly in studies involving active volcanoes. AEM systems typically comprise a transmitter and a receiver on an aircraft or in a towed bird, and although effective for surveying large areas, their penetration depth is limited because the distance between the transmitter and receiver is small and higher-frequency signals are used. To explore deeper structures using AEM, a semi-airborne system called GRounded Electrical source Airborne Transient ElectroMagnetics (GREATEM) has been developed. The system uses a grounded-electrical-dipole as the transmitter and generates horizontal electric fields. The GREATEM technology, first proposed by Mogi et al. (1998), has recently been improved and used in practical surveys (Mogi et al., 2009). The GREATEM survey system was developed to increase the depth of investigation possible using AEM. The method was tested in some volcanoes at 2004-2005. Here I will talk about some results of typical AEM surveys and GREATEM surveys in some volcanoes in Japan to mitigate hazards associated with volcano eruption. Geologic hazards caused by volcanic eruptions can be mitigated by a combination of prediction, preparedness and land-use control. Risk management depends on the identification of hazard zones and forecasting of eruptions. Hazard zoning involves the mapping of deposits which have formed during particular phases of volcanic activity and their extrapolation to identify the area which would be likely to suffer a similar hazard at some future time. The mapping is usually performed by surface geological surveys of volcanic deposits. Resistivity mapping by AEM is useful tool to identify each volcanic deposit on the surface and at shallower depth as well. This suggests that more efficient hazard map involving subsurface information can be supplied by AEM resistivity mapping.

A fine structure genomic map of the region of 12q13 containing SAS and CDK4

DOE Office of Scientific and Technical Information (OSTI.GOV)

Linder, C.Y.; Elkahloun, A.G.; Su, Y.A.

1994-09-01

We have recently adapted a method, originally described by Rackwitz, to the rapid restriction mapping of multiple cosmid DNA samples. Linearization of the cosmids at the lambda cohesive site using lambda terminase is followed by partial digestion with selected restriction enzymes and hybridization to oligonucleotides specific for the right or left hand termini. Partial digestions are performed in a microtiter plate thus allowing up to 12 cosmid clones to be digested with one restriction enzyme. We have applied this rapid restriction mapping method to cosmids derived from a region of chromosome 12q13 that has recently been shown to be amplifiedmore » in a variety of cancers including malignant fibrous histiocytoma, fibrosarcoma, liposarcoma, osteosarcoma and brain tumors. A small segment of this amplification unit containing three genes, SAS (a membrane protein), CDK4 (a cyclin dependent kinase) and OS-9 (a recently described cDNA) has been analyzed with the system described above. This fine structure genomic map will be useful for completing the expression map of this region as well as characterizing its pattern of amplification in tumor specimens.« less

Cerebral cartography and connectomics.

PubMed

Sporns, Olaf

2015-05-19

Cerebral cartography and connectomics pursue similar goals in attempting to create maps that can inform our understanding of the structural and functional organization of the cortex. Connectome maps explicitly aim at representing the brain as a complex network, a collection of nodes and their interconnecting edges. This article reflects on some of the challenges that currently arise in the intersection of cerebral cartography and connectomics. Principal challenges concern the temporal dynamics of functional brain connectivity, the definition of areal parcellations and their hierarchical organization into large-scale networks, the extension of whole-brain connectivity to cellular-scale networks, and the mapping of structure/function relations in empirical recordings and computational models. Successfully addressing these challenges will require extensions of methods and tools from network science to the mapping and analysis of human brain connectivity data. The emerging view that the brain is more than a collection of areas, but is fundamentally operating as a complex networked system, will continue to drive the creation of ever more detailed and multi-modal network maps as tools for on-going exploration and discovery in human connectomics. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Genetic subpopulation structuring and its implications in a mature eastern white pine stand

Treesearch

Samuel E. Nijensohn; Paul G. Schaberg; Gary J. Hawley; Donald H. DeHayes; Donald H. DeHayes

2005-01-01

We examined patterns of genetic structuring within a mature eastern white pine (Pinus strobus L.) forest, using geographic information system (GIS)-based data and maps that combined genetic (isozyme analysis of 46 loci) and other tree-specific information (e.g., size, growth, age, and location) for 220 trees in Jericho, Vermont. Interconnections between genotypic...

PDB2Graph: A toolbox for identifying critical amino acids map in proteins based on graph theory.

PubMed

Niknam, Niloofar; Khakzad, Hamed; Arab, Seyed Shahriar; Naderi-Manesh, Hossein

2016-05-01

The integrative and cooperative nature of protein structure involves the assessment of topological and global features of constituent parts. Network concept takes complete advantage of both of these properties in the analysis concomitantly. High compatibility to structural concepts or physicochemical properties in addition to exploiting a remarkable simplification in the system has made network an ideal tool to explore biological systems. There are numerous examples in which different protein structural and functional characteristics have been clarified by the network approach. Here, we present an interactive and user-friendly Matlab-based toolbox, PDB2Graph, devoted to protein structure network construction, visualization, and analysis. Moreover, PDB2Graph is an appropriate tool for identifying critical nodes involved in protein structural robustness and function based on centrality indices. It maps critical amino acids in protein networks and can greatly aid structural biologists in selecting proper amino acid candidates for manipulating protein structures in a more reasonable and rational manner. To introduce the capability and efficiency of PDB2Graph in detail, the structural modification of Calmodulin through allosteric binding of Ca(2+) is considered. In addition, a mutational analysis for three well-identified model proteins including Phage T4 lysozyme, Barnase and Ribonuclease HI, was performed to inspect the influence of mutating important central residues on protein activity. Copyright © 2016 Elsevier Ltd. All rights reserved.

Structural and stratigraphic framework and spatial distribution of permeability of the Atlantic coastal plain, North Carolina to New York

USGS Publications Warehouse

Brown, Philip Monroe; Miller, James A.; Swain, Frederick Morrill

1972-01-01

This report describes and interprets the results of a detailed subsurface mapping program undertaken in that part of the Atlantic Coastal Plain which extends from the South Carolina and North Carolina border through Long Island, N.Y. Data obtained from more than 2,200 wells are analyzed. Seventeen chronostratigraphic units are mapped in the subsurface. They range in age from Jurassic(?) to post-Miocene. The purpose of the mapping program was to determine the external and internal geometry of mappable chronostratigraphic units and to derive and construct a permeability-distribution network for each unit based upon contrasts in the textures and compositions of its contained sediments. The report contains a structure map and a combined isopach, lithofacies, and permeability-distribution map for each of the chronostratigraphic units delineated in the subsurface. In addition, it contains a map of the top of the basement surface. These maps, together with 36 stratigraphic cross sections, present a three-dimensional view of the regional subsurface hydrogeology. They provide focal points of reference for a discussion of regional tectonics, structure, stratigraphy, and permeability distribution. Taken together and in chronologic sequence, the maps constitute a detailed sedimentary model, the first such model to be constructed for the middle Atlantic Coastal Plain. The chronostratigraphic units mapped record a structural history dominated by lateral and vertical movement along a system of intersecting hinge zones. Taphrogeny, related to transcurrent faulting, is the dominant type of deformation that controlled the geometry of the sedimentary model. Twelve of the seventeen chronostratigraphic units mapped have depositional alinements and thickening trends that are independent of the present-day configuration of the underlying basement surface. These 12 units, classified as genetically unrooted units, are assigned to a first-order tectonic stage. A structural model is proposed whose alinements of positive and negative structural features are accordant with the depositional geometry of the chronostratigraphic units assigned to this tectonic stage. The dominant features of the structural model are northeast-plunging half grabens arranged en echelon and bordered by northeast-plunging fault-block anticlines. Tension-type hinge zones that strike north lie athwart the half grabens. Five of the seventeen chronostratigraphic units mapped have depositional alinements and thickening trends that are accordant with the present-day configuration of the underlying basement surface. These five units, classified as genetically rooted units, are assigned to a second-order tectonic stage. A structural model is proposed whose alinements of positive and negative features are accordant with the depositional geometry of the chronostratigraphic units assigned to this tectonic stage. The dominant feature of this model is a graben that stands tangential to southeast-plunging asymmetrical anticlines. Tension-type hinge zones that strike northeast lie athwart the graben. To account for the semiperiodic realinement of structural features that has characterized the history of the region and as a working hypothesis, we propose that the dominant tectonic element, which is present in the area between north Florida and Long Island, N.Y., is a unit-structural block, a ?basement? block, bounded by wrench-fault zones. We propose that forces derived principally from the rotation and precession of the earth act on the unit-structural block and deform it. Two tectonic models are proposed. One model is compatible with the structural and sedimentary geometries that are associated with chronostratigraphic units assigned to a first-order tectonic stage. It features tension-type hinge zones that strike north and shear-type hinge zones that strike northeast. The other model is compatible with the structural and sedimentary geometries associated with chronostratigraphi

The Wasp-Waist Nebula: VLA Ammonia Observations of the Molecular Core Envelope In a Unique Class 0 Protostellar System

NASA Technical Reports Server (NTRS)

Wiseman, Jennifer

2010-01-01

The Wasp-Waist Nebula was discovered in the IRAC c2d survey of the Ophiuchus starforming clouds. It is powered by a well-isolated, low-luminosity, low-mass Class 0 object. Its weak outflow has been mapped in the CO (3-2) transition with the JCMT, in 2.12 micron H2 emission with WIRC (the Wide-Field Infrared Camera) on the Hale 5-meter, and, most recently, in six H2 mid-infrared lines with the IRS (InfraRed Spectrograph) on-board the Spitzer Space Telescope; possible jet twisting structure may be evidence of unique core dynamics. Here, we report results of recent VLA ammonia mapping observations of the dense gas envelope feeding the central core protostellar system. We describe the morphology, kinematics, and angular momentum characteristics of this unique system. The results are compared with the envelope structure deduced from IRAC 8-micron absorption of the PAH (polycyclic aromatic hydrocarbon) background emission from the cloud.

Targeted Deletion of ERK5 MAP Kinase in the Developing Nervous System Impairs Development of GABAergic Interneurons in the Main Olfactory Bulb and Behavioral Discrimination between Structurally Similar Odorants

PubMed Central

Zou, Junhui; Pan, Yung-Wei; Wang, Zhenshan; Chang, Shih-Yu; Wang, Wenbin; Wang, Xin; Tournier, Cathy; Storm, Daniel R.; Xia, Zhengui

2012-01-01

ERK5 MAP kinase is highly expressed in the developing nervous system and has been implicated in promoting the survival of immature neurons in culture. However, its role in the development and function of the mammalian nervous system has not been established in vivo. Here, we report that conditional deletion of the erk5 gene in mouse neural stem cells during development reduces the number of GABAergic interneurons in the main olfactory bulb (OB). Our data suggest that this is due to a decrease in proliferation and an increase in apoptosis in the subventricular zone (SVZ) and rostral migratory stream (RMS) of ERK5 mutant mice. Interestingly, ERK5 mutant mice have smaller OB and are impaired in odor discrimination between structurally similar odorants. We conclude that ERK5 is a novel signaling pathway regulating developmental OB neurogenesis and olfactory behavior. PMID:22442076

NOAA Office of Exploration and Research > About OER > Organization > Map of

Science.gov Websites

About OER Overview Organization Guiding Documents Organizational Structure Map of Staff and Affiliate Overview Website & Social Media News Room OER Symposium Guiding Documents Organizational Structure Map About OER Overview Organization Guiding Documents Organizational Structure Map of Staff and Affiliate

Automatic transfer function design for medical visualization using visibility distributions and projective color mapping.

PubMed

Cai, Lile; Tay, Wei-Liang; Nguyen, Binh P; Chui, Chee-Kong; Ong, Sim-Heng

2013-01-01

Transfer functions play a key role in volume rendering of medical data, but transfer function manipulation is unintuitive and can be time-consuming; achieving an optimal visualization of patient anatomy or pathology is difficult. To overcome this problem, we present a system for automatic transfer function design based on visibility distribution and projective color mapping. Instead of assigning opacity directly based on voxel intensity and gradient magnitude, the opacity transfer function is automatically derived by matching the observed visibility distribution to a target visibility distribution. An automatic color assignment scheme based on projective mapping is proposed to assign colors that allow for the visual discrimination of different structures, while also reflecting the degree of similarity between them. When our method was tested on several medical volumetric datasets, the key structures within the volume were clearly visualized with minimal user intervention. Copyright © 2013 Elsevier Ltd. All rights reserved.

Complex Networks in Psychological Models

NASA Astrophysics Data System (ADS)

Wedemann, R. S.; Carvalho, L. S. A. V. D.; Donangelo, R.

We develop schematic, self-organizing, neural-network models to describe mechanisms associated with mental processes, by a neurocomputational substrate. These models are examples of real world complex networks with interesting general topological structures. Considering dopaminergic signal-to-noise neuronal modulation in the central nervous system, we propose neural network models to explain development of cortical map structure and dynamics of memory access, and unify different mental processes into a single neurocomputational substrate. Based on our neural network models, neurotic behavior may be understood as an associative memory process in the brain, and the linguistic, symbolic associative process involved in psychoanalytic working-through can be mapped onto a corresponding process of reconfiguration of the neural network. The models are illustrated through computer simulations, where we varied dopaminergic modulation and observed the self-organizing emergent patterns at the resulting semantic map, interpreting them as different manifestations of mental functioning, from psychotic through to normal and neurotic behavior, and creativity.

The dynamics of phase locking and points of resonance in a forced magnetic oscillator

NASA Astrophysics Data System (ADS)

Bryant, Paul; Jeffries, Carson

1987-03-01

We report data on an experimental system: a forced symmetric oscillator containing a saturable inductor with magnetic hysteresis. It displays a Hopf bifurcation to quasiperiodicity, entrainment horns, and chaos. We study in detail the bifurcations and hysteresis occurring near points of resonance (particularly “ strong resonance”) and show how the observed behavior can be understood using Arnold's theory. Much of the behavior relating to the entrainment horns is explored: period doubling and symmetry breaking bifurcations; homoclinic bifurcations; and crises and other bifurcations taking place at the horn boundaries. Important features of the behavior related to symmetry properties of the oscillator are studied and explained through the concept of a half-cycle map. The system is shown to exhibit a Hopf bifurcation from a phase-locked state to periodic “islands”, similar to those found in Hamiltonian systems. An initialization technique is used to observe the manifolds of saddle orbits and other hidden structure. An unusual differential equation model is developed which is irreversible and generates a noninvertible Poincaré map of the plane. Noninvertibility of this planar map has important effects on the behavior observed. The Poincaré map may also be approximated through experimental measurements, resulting in a planar map with parameter dependence. This model gives good correspondence with the system in a region of the parameter space.

NOTE: The feasibility of an infrared system for real-time visualization and mapping of ultrasound fields

NASA Astrophysics Data System (ADS)

Shaw, Adam; Nunn, John

2010-06-01

In treatment planning for ultrasound therapy, it is desirable to know the 3D structure of the ultrasound field. However, mapping an ultrasound field in 3D is very slow, with even a single planar raster scan taking typically several hours. Additionally, hydrophones that are used for field mapping are expensive and can be damaged in some therapy fields. So there is value in rapid methods which enable visualization and mapping of the ultrasound field in about 1 min. In this note we explore the feasibility of mapping the intensity distribution by measuring the temperature distribution produced in a thin sheet of absorbing material. A 0.2 mm thick acetate sheet forms a window in the wall of a water tank containing the transducer. The window is oriented at 45° to the beam axis, and the distance from the transducer to the window can be varied. The temperature distribution is measured with an infrared camera; thermal images of the inclined plane could be viewed in real time or images could be captured for later analysis and 3D field reconstruction. We conclude that infrared thermography can be used to gain qualitative information about ultrasound fields. Thermal images are easily visualized with good spatial and thermal resolutions (0.044 mm and 0.05 °C in our system). The focus and field structure such as side lobes can be identified in real time from the direct video output. 3D maps and image planes at arbitrary orientations to the beam axis can be obtained and reconstructed within a few minutes. In this note we are primarily interested in the technique for characterization of high intensity focused ultrasound (HIFU) fields, but other applications such as physiotherapy fields are also possible.

The feasibility of an infrared system for real-time visualization and mapping of ultrasound fields.

PubMed

Shaw, Adam; Nunn, John

2010-06-07

In treatment planning for ultrasound therapy, it is desirable to know the 3D structure of the ultrasound field. However, mapping an ultrasound field in 3D is very slow, with even a single planar raster scan taking typically several hours. Additionally, hydrophones that are used for field mapping are expensive and can be damaged in some therapy fields. So there is value in rapid methods which enable visualization and mapping of the ultrasound field in about 1 min. In this note we explore the feasibility of mapping the intensity distribution by measuring the temperature distribution produced in a thin sheet of absorbing material. A 0.2 mm thick acetate sheet forms a window in the wall of a water tank containing the transducer. The window is oriented at 45 degrees to the beam axis, and the distance from the transducer to the window can be varied. The temperature distribution is measured with an infrared camera; thermal images of the inclined plane could be viewed in real time or images could be captured for later analysis and 3D field reconstruction. We conclude that infrared thermography can be used to gain qualitative information about ultrasound fields. Thermal images are easily visualized with good spatial and thermal resolutions (0.044 mm and 0.05 degrees C in our system). The focus and field structure such as side lobes can be identified in real time from the direct video output. 3D maps and image planes at arbitrary orientations to the beam axis can be obtained and reconstructed within a few minutes. In this note we are primarily interested in the technique for characterization of high intensity focused ultrasound (HIFU) fields, but other applications such as physiotherapy fields are also possible.

Using Commercial Digital Cameras and Structure-for-Motion Software to Map Snow Cover Depth from Small Aircraft

NASA Astrophysics Data System (ADS)

Sturm, M.; Nolan, M.; Larsen, C. F.

2014-12-01

A long-standing goal in snow hydrology has been to map snow cover in detail, either mapping snow depth or snow water equivalent (SWE) with sub-meter resolution. Airborne LiDAR and air photogrammetry have been used successfully for this purpose, but both require significant investments in equipment and substantial processing effort. Here we detail a relatively inexpensive and simple airborne photogrammetric technique that can be used to measure snow depth. The main airborne hardware consists of a consumer-grade digital camera attached to a survey-quality, dual-frequency GPS. Photogrammetric processing is done using commercially available Structure from Motion (SfM) software that does not require ground control points. Digital elevation models (DEMs) are made from snow-free acquisitions in the summer and snow-covered acquisitions in winter, and the maps are then differenced to arrive at snow thickness. We tested the accuracy and precision of snow depths measured using this system through 1) a comparison with airborne scanning LiDAR, 2) a comparison of results from two independent and slightly different photogrameteric systems, and 3) comparison to extensive on-the-ground measured snow depths. Vertical accuracy and precision are on the order of +/-30 cm and +/- 8 cm, respectively. The accuracy can be made to approach that of the precision if suitable snow-free ground control points exists and are used to co-register summer to winter DEM maps. Final snow depth accuracy from our series of tests was on the order of ±15 cm. This photogrammetric method substantially lowers the economic and expertise barriers to entry for mapping snow.

Optimal contact definition for reconstruction of contact maps.

PubMed

Duarte, Jose M; Sathyapriya, Rajagopal; Stehr, Henning; Filippis, Ioannis; Lappe, Michael

2010-05-27

Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being preferred by a number of researchers for the description and study of protein structures. Inspired by the model's simplicity many groups have dedicated a considerable amount of effort towards contact prediction as a proxy for protein structure prediction. However a contact map's biological interest is subject to the availability of reliable methods for the 3-dimensional reconstruction of the structure. We use an implementation of the well-known distance geometry protocol to build realistic protein 3-dimensional models from contact maps, performing an extensive exploration of many of the parameters involved in the reconstruction process. We try to address the questions: a) to what accuracy does a contact map represent its corresponding 3D structure, b) what is the best contact map representation with regard to reconstructability and c) what is the effect of partial or inaccurate contact information on the 3D structure recovery. Our results suggest that contact maps derived from the application of a distance cutoff of 9 to 11A around the Cbeta atoms constitute the most accurate representation of the 3D structure. The reconstruction process does not provide a single solution to the problem but rather an ensemble of conformations that are within 2A RMSD of the crystal structure and with lower values for the pairwise average ensemble RMSD. Interestingly it is still possible to recover a structure with partial contact information, although wrong contacts can lead to dramatic loss in reconstruction fidelity. Thus contact maps represent a valid approximation to the structures with an accuracy comparable to that of experimental methods. The optimal contact definitions constitute key guidelines for methods based on contact maps such as structure prediction through contacts and structural alignments based on maximum contact map overlap.

Optimal contact definition for reconstruction of Contact Maps

PubMed Central

2010-01-01

Background Contact maps have been extensively used as a simplified representation of protein structures. They capture most important features of a protein's fold, being preferred by a number of researchers for the description and study of protein structures. Inspired by the model's simplicity many groups have dedicated a considerable amount of effort towards contact prediction as a proxy for protein structure prediction. However a contact map's biological interest is subject to the availability of reliable methods for the 3-dimensional reconstruction of the structure. Results We use an implementation of the well-known distance geometry protocol to build realistic protein 3-dimensional models from contact maps, performing an extensive exploration of many of the parameters involved in the reconstruction process. We try to address the questions: a) to what accuracy does a contact map represent its corresponding 3D structure, b) what is the best contact map representation with regard to reconstructability and c) what is the effect of partial or inaccurate contact information on the 3D structure recovery. Our results suggest that contact maps derived from the application of a distance cutoff of 9 to 11Å around the Cβ atoms constitute the most accurate representation of the 3D structure. The reconstruction process does not provide a single solution to the problem but rather an ensemble of conformations that are within 2Å RMSD of the crystal structure and with lower values for the pairwise average ensemble RMSD. Interestingly it is still possible to recover a structure with partial contact information, although wrong contacts can lead to dramatic loss in reconstruction fidelity. Conclusions Thus contact maps represent a valid approximation to the structures with an accuracy comparable to that of experimental methods. The optimal contact definitions constitute key guidelines for methods based on contact maps such as structure prediction through contacts and structural alignments based on maximum contact map overlap. PMID:20507547

Marsh canopy leaf area and orientation calculated for improved marsh structure mapping

USGS Publications Warehouse

Ramsey, Elijah W.; Rangoonwala, Amina; Jones, Cathleen E.; Bannister, Terri

2015-01-01

An approach is presented for producing the spatiotemporal estimation of leaf area index (LAI) of a highly heterogeneous coastal marsh without reliance on user estimates of marsh leaf-stem orientation. The canopy LAI profile derivation used three years of field measured photosynthetically active radiation (PAR) vertical profiles at seven S. alterniflora marsh sites and iterative transform of those PAR attenuation profiles to best-fit light extinction coefficients (KM). KM sun zenith dependency was removed obtaining the leaf angle distribution (LAD) representing the average marsh orientation and the LAD used to calculate the LAI canopy profile. LAI and LAD reproduced measured PAR profiles with 99% accuracy and corresponded to field documented structures. LAI and LAD better reflect marsh structure and results substantiate the need to account for marsh orientation. The structure indexes are directly amenable to remote sensing spatiotemporal mapping and offer a more meaningful representation of wetland systems promoting biophysical function understanding.

STOCK: Structure mapper and online coarse-graining kit for molecular simulations

DOE PAGES

Bevc, Staš; Junghans, Christoph; Praprotnik, Matej

2015-03-15

We present a web toolkit STructure mapper and Online Coarse-graining Kit for setting up coarse-grained molecular simulations. The kit consists of two tools: structure mapping and Boltzmann inversion tools. The aim of the first tool is to define a molecular mapping from high, e.g. all-atom, to low, i.e. coarse-grained, resolution. Using a graphical user interface it generates input files, which are compatible with standard coarse-graining packages, e.g. VOTCA and DL_CGMAP. Our second tool generates effective potentials for coarse-grained simulations preserving the structural properties, e.g. radial distribution functions, of the underlying higher resolution model. The required distribution functions can be providedmore » by any simulation package. Simulations are performed on a local machine and only the distributions are uploaded to the server. The applicability of the toolkit is validated by mapping atomistic pentane and polyalanine molecules to a coarse-grained representation. Effective potentials are derived for systems of TIP3P (transferable intermolecular potential 3 point) water molecules and salt solution. The presented coarse-graining web toolkit is available at http://stock.cmm.ki.si.« less

Beta Testing StraboSpot: Perspectives on mobile field mapping and data collection

NASA Astrophysics Data System (ADS)

Bunse, E.; Graham, K. A.; Rufledt, C.; Walker, J. D.; Müller, A.; Tikoff, B.

2017-12-01

Geologic field mapping has recently transitioned away from traditional techniques (e.g. field notebooks, paper mapping, Brunton compasses) and towards mobile `app' mapping technology. The StraboSpot system (Strabo) is an open-source solution for collection and storage for geologic field, microstructural, and lab-based data. Strabo's mission is to "enable recording and sharing data within the geoscience community, encourage interdisciplinary research, and facilitate the investigation of scientific questions that cannot currently be addressed" (Walker et al., 2015). Several mobile application beta tests of the system, on both Android and Apple iOS platforms using smartphones and tablets, began in Summer 2016. Students at the 2016 and 2017 University of Kansas Field Camps used Strabo in place of ArcGIS for Desktop on Panasonic Toughbooks, to field map two study areas. Strabo was also field tested by students of graduate and undergraduate level for both geo/thermochronologic sample collection and reconnaissance mapping associated with regional tectonic analysis in California. Throughout this period of testing, the app was geared toward structural and tectonic geologic data collection, but is versatile enough for other communities to currently use and is expanding to accommodate the sedimentology and petrology communities. Overall, users in each of the beta tests acclimated quickly to using Strabo for field data collection. Some key advantages to using Strabo over traditional mapping methods are: (1) Strabo allows for consolidation of materials in the field; (2) helps students track their position in the field with integrated GPS; and (3) Strabo data is in a uniform format making it simple for geologists to collaborate. While traditional field methods are not likely to go out of style in the near future, Strabo acts as a bridge between professional and novice geologists by providing a tool that is intuitive on all levels of geological and technological experience and allows for more effective collaboration in the field. Walker, J. Douglas, et al. (2015), Development of Structural Geology and Tectonics Data System with Field and Lab Interface, Abstract IN21E-04 presented at 2015 Fall Meeting, AGU, San Francisco, Calif., 14-18 Dec.

GPR in Ramboll

NASA Astrophysics Data System (ADS)

Ringgaard, Jørgen; Wisén, Roger

2014-05-01

The Ramboll Group is a large (10.000 employees worldwide) engineering and consultancy company, with offices in 21 countries. Ramboll has been working with geophysics for about 20 years and at the time of writing there are about 25 geophysicist employed in the group, 20 of these are employed in Ramboll Denmark. Ramboll offers an extensive range of geophysical methods: different types of seismic, borehole wireline logging, electric and electromagnetic surveys, magnetic resonance soundings and well as marine geophysical and hydrographic surveys. The geophysical group at Ramboll operates in different industries comprising: Infrastructure, environmental assessments, mineral exploration, energy and offshore constructions. In the recent years our GPR activities has increased significantly. Today Ramboll Denmark owns three separate GPR systems: One GSSI SIR-3000 with antennas ranging from 16MHz to 2GHz, One Mala geoscience ProEx system with a 100MHz RTA antenna and one 3D-radar Geoscope MKIV system with two DX antennas of different size. The main services are geological mapping with our ProEx system from Malå Geoscience, road mapping with a GSSI system and different shallow mapping with our 3D system from 3D Radar. With our 2D systems we have performed mapping of peat in different places in Norway, mapping of sediments at various places in the Nordic countries and mapping of glacier thickness in Greenland. In this type of investigations we often combine GPR with resistivity imaging (CVES) and refraction seismic to ensure a more reliable interpretation. We have performed occasional utility or UXO surveys where GPR has been used together with EM or magnetic measurements. The mapping on roads with the GSSI system is performed by our RST (Road Surface Testing) department in Malmö, Sweden. The measurements on roads are often combined with laser scanning and photo registration of the surface. Various software have been developed to automatize the interpretation. The RST group has contributed to aninternational collaboration between several countries about preparation of guidelines for application of GPR on roads, the Mara Nord Project. Our 3D system is used for various types of surveys. In airports mapping has been performed both on runways, taxiways and aprons with the aim of mapping layer thicknesses and delamination for planning of maintenance work. Acquisition has also been done on roads for control of asphalt works and mapping of the road bed. On bridges mapping of rebars and structure has been performed. The 3D system is also used for determination of space behind frost insulation walls in tunnels in Norway. This work is based on a pilot project made by SINTEF in Norway. This abstract is a contribution to COST Action TU1208.

Developing custom fire behavior fuel models from ecologically complex fuel structures for upper Atlantic Coastal Plain forests

Treesearch

Bernard R. Parresol; Joe H. Scott; Anne Andreu; Susan Prichard; Laurie Kurth

2012-01-01

Currently geospatial fire behavior analyses are performed with an array of fire behavior modeling systems such as FARSITE, FlamMap, and the Large Fire Simulation System. These systems currently require standard or customized surface fire behavior fuel models as inputs that are often assigned through remote sensing information. The ability to handle hundreds or...

An ISVD-based Euclidian structure from motion for smartphones

NASA Astrophysics Data System (ADS)

Masiero, A.; Guarnieri, A.; Vettore, A.; Pirotti, F.

2014-06-01

The development of Mobile Mapping systems over the last decades allowed to quickly collect georeferenced spatial measurements by means of sensors mounted on mobile vehicles. Despite the large number of applications that can potentially take advantage of such systems, because of their cost their use is currently typically limited to certain specialized organizations, companies, and Universities. However, the recent worldwide diffusion of powerful mobile devices typically embedded with GPS, Inertial Navigation System (INS), and imaging sensors is enabling the development of small and compact mobile mapping systems. More specifically, this paper considers the development of a 3D reconstruction system based on photogrammetry methods for smartphones (or other similar mobile devices). The limited computational resources available in such systems and the users' request for real time reconstructions impose very stringent requirements on the computational burden of the 3D reconstruction procedure. This work takes advantage of certain recently developed mathematical tools (incremental singular value decomposition) and of photogrammetry techniques (structure from motion, Tomasi-Kanade factorization) to access very computationally efficient Euclidian 3D reconstruction of the scene. Furthermore, thanks to the presence of instrumentation for localization embedded in the device, the obtained 3D reconstruction can be properly georeferenced.

Structure contour map of the greater Green River basin, Wyoming, Colorado, and Utah

USGS Publications Warehouse

Lickus, M.R.; Law, B.E.

1988-01-01

The Greater Green River basin of Wyoming, Colorado, and Utah contains five basins and associated major uplifts (fig. 1). Published structure maps of the region have commonly used the top of the Lower Cretaceous Dakota Sandstone as a structural datum (Petroleum Ownership Map Company (POMCO), 1984; Rocky Mountain Association of Geologists, 1972). However, because relatively few wells in this area penetrate the Dakota, the Dakota structural datum has to be constructed by projecting down from shallower wells. Extrapolating in this manner may produce errors in the map. The primary purpose of this report is to present a more reliable structure contour map of the Greater Green River basin based on datums that are penetrated by many wells. The final map shows the large- to small-scale structures present in the Greater Green River basin. The availability of subsurface control and the map scale determined whether or not a structural feature was included on the map. In general, large structures such as the Moxa arch, Pinedale anticline, and other large folds were placed on the map based solely on the structure contours. In comparison, smaller folds and some faults were placed on the map based on structure contours and other reports (Bader 1987; Bradley 1961; Love and Christiansen, 1985; McDonald, 1975; Roehler, 1979; Wyoming Geological Association Oil and Gas Symposium Committee, 1979). State geologic maps and other reports were used to position basin margin faults (Bryant, 1985; Gries, 1983a, b; Hansen 1986; Hintze, 1980; Love and Christiansen, 1985; Tweto, 1979, 1983). In addition, an interpreted east-west-trending regional seismic line by Garing and Tainter (1985), which shows the basin configuration in cross-section, was helpful in locating buried faults, such as the high-angle reverse or thrust fault along the west flank of the Rock Springs uplift.

Volcanic Gas Emissions Mapping Using a Mass Spectrometer System

NASA Technical Reports Server (NTRS)

Griffin, Timothy P.; Diaz, J. Andres

2008-01-01

The visualization of hazardous gaseous emissions at volcanoes using in-situ mass spectrometry (MS) is a key step towards a better comprehension of the geophysical phenomena surrounding eruptive activity. In-Situ gas data consisting of helium, carbon dioxide, sulfur dioxide, and other gas species, were acquired with an MS system. MS and global position system (GPS) data were plotted on ground imagery, topography, and remote sensing data collected by a host of instruments during the second Costa Rica Airborne Research and Technology Applications (CARTA) mission This combination of gas and imaging data allowed 3-dimensional (3-D) visualization of the volcanic plume end the mapping of gas concentration at several volcanic structures and urban areas This combined set of data has demonstrated a better tool to assess hazardous conditions by visualizing and modeling of possible scenarios of volcanic activity. The MS system is used for in-situ measurement of three-dimensional gas concentrations at different volcanic locations with three different transportation platforms, aircraft, auto, and hand carried. The demonstration for urban contamination mapping is also presented as another possible use for the MS system.

Design of a laser navigation system for the inspection robot used in substation

NASA Astrophysics Data System (ADS)

Zhu, Jing; Sun, Yanhe; Sun, Deli

2017-01-01

Aimed at the deficiency of the magnetic guide and RFID parking system used by substation inspection robot now, a laser navigation system is designed, and the system structure, the method of map building and positioning are all introduced. The system performance is tested in a 500kV substation, and the result show that the repetitive precision of navigation system is precise enough to help the robot fulfill inspection tasks.

Geologic map and structural analysis of the Victoria quadrangle (H2) of Mercury based on NASA MESSENGER images

NASA Astrophysics Data System (ADS)

Galluzzi, V.; Di Achille, G.; Ferranti, L.; Rothery, D. A.; Palumbo, P.

The first stratigraphic and geologic study of Mercury was released by Trask & Guest (1975) followed by Spudis & Guest (1988, and references therein), whose work was based on the images taken by Mariner 10 covering 42% of the total surface of Mercury. The planet has been officially divided into fifteen quadrangles: 2 polar, 5 equatorial and 8 at midlatitudes. Quadrangle H2 (= Hermes sheet n.2), named ``Victoria'' (20oN - 65oN Lon.; 270oE - 0o Lat.), was partially mapped by McGill & King (1983), though a wide area (˜64%) remained unmapped due to the lack of imagery. Following the terrain units recognized and described by the above authors, we have produced a geologic map of the entire quadrangle using MESSENGER (MErcury Surface, Space ENvironment, GEochemistry and Ranging) images. The images taken by the Mercury Dual Imaging System (MDIS) Wide Angle Camera (WAC) and Narrow Angle Camera (NAC) allowed us to map geologic and tectonic features in much greater detail than the previously published map (mapping scale range between 1:300k and 1:600k). We classified craters larger than 20 km using three relative age classes, which are a simplification of the past five degradation classes defined by McCauley et al. (1981). Victoria quadrangle is characterized by a localized N-S thrust array constituted by Victoria Rupes, Endeavour Rupes and Antoniadi Dorsum to the East and by a more diffuse system of NE-SW oriented fault arrays to the West: the two systems seem to be separated by a tectonic bulge. The Victoria-Endeavour-Antoniadi system has been interpreted as a fold-and-thrust belt by Byrne et al. (2014) and a previous study made on craters cross-cut by its thrusts reveals fault dips of 15-20o and a near dip slip motion (Galluzzi et al., 2015). This geologic map has the aim to build a regional model of its structural framework. Deciphering the geological setting of this quadrangle will bring important insights for understanding the tectonic evolution of the whole planet. Moreover, the results obtained with this study can help in the future targeting choices of the BepiColombo SIMBIOSYS instruments.

Structural Mapping of Paterae and Mountains on Io: Implications for Crustal Stresses and Feature Evolution

NASA Astrophysics Data System (ADS)

Ahern, A.; Radebaugh, J.; Christiansen, E. H.; Harris, R. A.

2015-12-01

Paterae and mountains are some of the most distinguishing and well-distributed surface features on Io, and they reveal the role of tectonism in Io's crust. Paterae, similar to calderas, are volcano-tectonic collapse features that often have straight margins. Io's mountains are some of the highest in the solar system and contain linear features that reveal crustal stresses. Paterae and mountains are often found adjacent to one another, suggesting possible genetic relationships. We have produced twelve detailed regional structural maps from high-resolution images of relevant features, where available, as well as a global structural map from the Io Global Color Mosaic. The regional structural maps identify features such as fractures, lineations, folds, faults, and mass wasting scarps, which are then interpreted in the context of global and regional stress regimes. A total of 1048 structural lineations have been identified globally. Preliminary analyses of major thrust and normal fault orientations are dominantly 90° offset from each other, suggesting the maximum contractional stresses leading to large mountain formation are not a direct result of tidal extension. Rather, these results corroborate the model of volcanic loading of the crust and global shortening, leading to thrust faulting and uplift of coherent crustal blocks. Several paterae, such as Hi'iaka and Tohil, are found adjacent to mountains inside extensional basins where lava has migrated up normal faults to erupt onto patera floors. Over time, mass wasting and volcanic resurfacing can change mountains from young, steep, and angular peaks to older, gentler, and more rounded hills. Mass wasting scarps make up 53% of all features identified. The structural maps highlight the significant effect of mass wasting on Io's surface, the evolution of mountains through time, the role of tectonics in the formation of paterae, and the formation of mountains through global contraction due to volcanism.

CAVEman: Standardized Anatomical Context for Biomedical Data Mapping

ERIC Educational Resources Information Center

Turinsky, Andrei L.; Fanea, Elena; Trinh, Quang; Wat, Stephen; Hallgrimsson, Benedikt; Dong, Xiaoli; Shu, Xueling; Stromer, Julie N.; Hill, Jonathan W.; Edwards, Carol; Grosenick, Brenda; Yajima, Masumi; Sensen, Christoph W.

2008-01-01

The authors have created a software system called the CAVEman, for the visual integration and exploration of heterogeneous anatomical and biomedical data. The CAVEman can be applied for both education and research tasks. The main component of the system is a three-dimensional digital atlas of the adult male human anatomy, structured according to…

Using System Dynamics as an Evaluation Tool: Experience from a Demonstration Program

ERIC Educational Resources Information Center

Fredericks, Kimberly A.; Deegan, Michael; Carman, Joanne G.

2008-01-01

Evaluators are often faced with many challenges in the design and implementation of a program's evaluation. Because programs are entangled in complex networks of structures and stakeholders, they can be challenging to understand, and they often pose issues of competing and conflicting goals. However, by using a systems mapping approach to…

Rise and Decline of Education Systems: A Contribution to the History of the Modern State

ERIC Educational Resources Information Center

Mitter, Wolfgang

2004-01-01

If by 'education systems' we understand institutional units, constituted by common legal provisions, organizational structures, curricular goals and value foundations, the current period signals their decline. This indicates the decline of the modern nation state, which has characterized the political map of Europe for 300 years and gradually…

Quantitative classification of a historic northern Wisconsin (U.S.A.) landscape: mapping forests at regional scales

Treesearch

Lisa A. Schulte; David J. Mladenoff; Erik V. Nordheim

2002-01-01

We developed a quantitative and replicable classification system to improve understanding of historical composition and structure within northern Wisconsin's forests. The classification system was based on statistical cluster analysis and two forest metrics, relative dominance (% basal area) and relative importance (mean of relative dominance and relative density...

The Effect of Functional Flow Diagrams on Apprentice Aircraft Mechanics' Technical System Understanding.

ERIC Educational Resources Information Center

Johnson, Scott D.; Satchwell, Richard E.

1993-01-01

Describes an experimental study that tested the impact of a conceptual illustration on college students' understanding of the structure, function, and behavior of complex technical systems. The use of functional flow diagrams in aircraft mechanics' training is explained, a concept map analysis is discussed, and implications for technical training…

Mapping of spin wave propagation in a one-dimensional magnonic crystal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ordóñez-Romero, César L., E-mail: cloro@fisica.unam.mx; Lazcano-Ortiz, Zorayda; Aguilar-Huerta, Melisa

2016-07-28

The formation and evolution of spin wave band gaps in the transmission spectrum of a magnonic crystal have been studied. A time and space resolved magneto inductive probing system has been used to map the spin wave propagation and evolution in a geometrically structured yttrium iron garnet film. Experiments have been carried out using (1) a chemically etched magnonic crystal supporting the propagation of magnetostatic surface spin waves, (2) a short microwave pulsed excitation of the spin waves, and (3) direct spin wave detection using a movable magneto inductive probe connected to a synchronized fast oscilloscope. The results show thatmore » the periodic structure not only modifies the spectra of the transmitted spin waves but also influences the distribution of the spin wave energy inside the magnonic crystal as a function of the position and the transmitted frequency. These results comprise an experimental confirmation of Bloch′s theorem in a spin wave system and demonstrate good agreement with theoretical observations in analogue phononic and photonic systems. Theoretical prediction of the structured transmission spectra is achieved using a simple model based on microwave transmission lines theory. Here, a spin wave system illustrates in detail the evolution of a much more general physical concept: the band gap.« less

Coming To Know: The Role of the Concept Map--Mirror, Assistant, Master?

ERIC Educational Resources Information Center

McAleese, Ray

This paper explains the process of creating and managing concept maps, using reflection as a focus for its argument. Section 1, What is a Concept Map?, highlights the background and definition of concept mapping, explains how maps signify virtual conceptual structures, looks at structural knowledge, provides an example of a concept map, and…

Concept Map Structure, Gender and Teaching Methods: An Investigation of Students' Science Learning

ERIC Educational Resources Information Center

Gerstner, Sabine; Bogner, Franz X.

2009-01-01

Background: This study deals with the application of concept mapping to the teaching and learning of a science topic with secondary school students in Germany. Purpose: The main research questions were: (1) Do different teaching approaches affect concept map structure or students' learning success? (2) Is the structure of concept maps influenced…

Response phase mapping of nonlinear joint dynamics using continuous scanning LDV measurement method

NASA Astrophysics Data System (ADS)

Di Maio, D.; Bozzo, A.; Peyret, Nicolas

2016-06-01

This study aims to present a novel work aimed at locating discrete nonlinearities in mechanical assemblies. The long term objective is to develop a new metric for detecting and locating nonlinearities using Scanning LDV systems (SLDV). This new metric will help to improve the modal updating, or validation, of mechanical assemblies presenting discrete and sparse nonlinearities. It is well established that SLDV systems can scan vibrating structures with high density of measurement points and produc e highly defined Operational Deflection Shapes (ODSs). This paper will present some insights on how to use response phase mapping for locating nonlinearities of a bolted flange. This type of structure presents two types of nonlinearities, which are geometr ical and frictional joints. The interest is focussed on the frictional joints and, therefore, the ability to locate which joint s are responsible for nonlinearity is seen highly valuable for the model validation activities.

4D blood flow mapping using SPIM-microPIV in the developing zebrafish heart

NASA Astrophysics Data System (ADS)

Zickus, Vytautas; Taylor, Jonathan M.

2018-02-01

Fluid-structure interaction in the developing heart is an active area of research in developmental biology. However, investigation of heart dynamics is mostly limited to computational uid dynamics simulations using heart wall structure information only, or single plane blood ow information - so there is a need for 3D + time resolved data to fully understand cardiac function. We present an imaging platform combining selective plane illumination microscopy (SPIM) with micro particle image velocimetry (μPIV) to enable 3D-resolved flow mapping in a microscopic environment, free from many of the sources of error and bias present in traditional epi uorescence-based μPIV systems. By using our new system in conjunction with optical heart beat synchronization, we demonstrate the ability obtain non-invasive 3D + time resolved blood flow measurements in the heart of a living zebrafish embryo.

Vector representation of user's view using self-organizing map

NASA Astrophysics Data System (ADS)

Ae, Tadashi; Yamaguchi, Tomohisa; Monden, Eri; Kawabata, Shunji; Kamitani, Motoki

2004-05-01

There exist various objects, such as pictures, music, texts, etc., around our environment. We have a view for these objects by looking, reading or listening. Our view is concerned with our behaviors deeply, and is very important to understand our behaviors. Therefore, we propose a method which acquires a view as a vector, and apply the vector to sequence generation. We focus on sequences of the data of which a user selects from a multimedia database containing pictures, music, movie, etc.. These data cannot be stereotyped because user's view for them changes by each user. Therefore, we represent the structure of the multimedia database as the vector representing user's view and the stereotyped vector, and acquire sequences containing the structure as elements. We demonstrate a city-sequence generation system which reflects user's intension as an application of sequence generation containing user's view. We apply the self-organizing map to this system to represent user's view.

Iconicity as structure mapping

PubMed Central

Emmorey, Karen

2014-01-01

Linguistic and psycholinguistic evidence is presented to support the use of structure-mapping theory as a framework for understanding effects of iconicity on sign language grammar and processing. The existence of structured mappings between phonological form and semantic mental representations has been shown to explain the nature of metaphor and pronominal anaphora in sign languages. With respect to processing, it is argued that psycholinguistic effects of iconicity may only be observed when the task specifically taps into such structured mappings. In addition, language acquisition effects may only be observed when the relevant cognitive abilities are in place (e.g. the ability to make structural comparisons) and when the relevant conceptual knowledge has been acquired (i.e. information key to processing the iconic mapping). Finally, it is suggested that iconicity is better understood as a structured mapping between two mental representations than as a link between linguistic form and human experience. PMID:25092669

Modular and Adaptive Control of Sound Processing

NASA Astrophysics Data System (ADS)

van Nort, Douglas

This dissertation presents research into the creation of systems for the control of sound synthesis and processing. The focus differs from much of the work related to digital musical instrument design, which has rightly concentrated on the physicality of the instrument and interface: sensor design, choice of controller, feedback to performer and so on. Often times a particular choice of sound processing is made, and the resultant parameters from the physical interface are conditioned and mapped to the available sound parameters in an exploratory fashion. The main goal of the work presented here is to demonstrate the importance of the space that lies between physical interface design and the choice of sound manipulation algorithm, and to present a new framework for instrument design that strongly considers this essential part of the design process. In particular, this research takes the viewpoint that instrument designs should be considered in a musical control context, and that both control and sound dynamics must be considered in tandem. In order to achieve this holistic approach, the work presented in this dissertation assumes complementary points of view. Instrument design is first seen as a function of musical context, focusing on electroacoustic music and leading to a view on gesture that relates perceived musical intent to the dynamics of an instrumental system. The important design concept of mapping is then discussed from a theoretical and conceptual point of view, relating perceptual, systems and mathematically-oriented ways of examining the subject. This theoretical framework gives rise to a mapping design space, functional analysis of pertinent existing literature, implementations of mapping tools, instrumental control designs and several perceptual studies that explore the influence of mapping structure. Each of these reflect a high-level approach in which control structures are imposed on top of a high-dimensional space of control and sound synthesis parameters. In this view, desired gestural dynamics and sonic response are achieved through modular construction of mapping layers that are themselves subject to parametric control. Complementing this view of the design process, the work concludes with an approach in which the creation of gestural control/sound dynamics are considered in the low-level of the underlying sound model. The result is an adaptive system that is specialized to noise-based transformations that are particularly relevant in an electroacoustic music context. Taken together, these different approaches to design and evaluation result in a unified framework for creation of an instrumental system. The key point is that this framework addresses the influence that mapping structure and control dynamics have on the perceived feel of the instrument. Each of the results illustrate this using either top-down or bottom-up approaches that consider musical control context, thereby pointing to the greater potential for refined sonic articulation that can be had by combining them in the design process.

The heart, macrocirculation and microcirculation in hypertension: a unifying hypothesis.

PubMed

Struijker Boudier, Harry A J; Cohuet, Géraldine M S; Baumann, Marcus; Safar, Michel E

2003-06-01

Epidemiological studies in the past decade have stressed the importance of both pulse pressure and mean arterial pressure (MAP) as important risk factors in hypertension-related cardiovascular disease. Pulse pressure and MAP are determined by different segments of the cardiovascular system. Pulse pressure is the pulsatile component of the blood pressure curve. It is determined by left ventricular ejection, the cushioning capacity (compliance) of the large arteries, and the timing and intensity of wave reflections from the microcirculation. MAP is the steady component; it is determined by cardiac output and peripheral (micro)vascular resistance. To a large degree, the structural design of the heart and vascular tree determine the pulse pressure and MAP, in addition to the propagation of the pressure wave through the vasculature. Pressure and flow, in contrast, influence the composition and geometry of the heart and vasculature. Hypertensive disease is associated with important structural alterations of the heart, such as hypertrophy and fibrosis, and of the vasculature, such as large artery stiffening, small artery remodelling and microvascular rarefaction. Recent basic research has revealed some of the molecular pathways involved in the remodelling of the cardiovascular system under the influence of physical forces. For correct understanding of the pathophysiology of hypertensive disease, its risks for target-organ damage and its effective treatment, both the pulsatile and steady components of the blood pressure curve must be considered.

Accurate Damage Location in Complex Composite Structures and Industrial Environments using Acoustic Emission

NASA Astrophysics Data System (ADS)

Eaton, M.; Pearson, M.; Lee, W.; Pullin, R.

2015-07-01

The ability to accurately locate damage in any given structure is a highly desirable attribute for an effective structural health monitoring system and could help to reduce operating costs and improve safety. This becomes a far greater challenge in complex geometries and materials, such as modern composite airframes. The poor translation of promising laboratory based SHM demonstrators to industrial environments forms a barrier to commercial up take of technology. The acoustic emission (AE) technique is a passive NDT method that detects elastic stress waves released by the growth of damage. It offers very sensitive damage detection, using a sparse array of sensors to detect and globally locate damage within a structure. However its application to complex structures commonly yields poor accuracy due to anisotropic wave propagation and the interruption of wave propagation by structural features such as holes and thickness changes. This work adopts an empirical mapping technique for AE location, known as Delta T Mapping, which uses experimental training data to account for such structural complexities. The technique is applied to a complex geometry composite aerospace structure undergoing certification testing. The component consists of a carbon fibre composite tube with varying wall thickness and multiple holes, that was loaded under bending. The damage location was validated using X-ray CT scanning and the Delta T Mapping technique was shown to improve location accuracy when compared with commercial algorithms. The onset and progression of damage were monitored throughout the test and used to inform future design iterations.

Spatial digital database of the geologic map of Catalina Core Complex and San Pedro Trough, Pima, Pinal, Gila, Graham, and Cochise counties, Arizona

USGS Publications Warehouse

Dickinson, William R.; digital database by Hirschberg, Douglas M.; Pitts, G. Stephen; Bolm, Karen S.

2002-01-01

The geologic map of Catalina Core Complex and San Pedro Trough by Dickinson (1992) was digitized for input into a geographic information system (GIS) by the U.S. Geological Survey staff and contractors in 2000-2001. This digital geospatial database is one of many being created by the U.S. Geological Survey as an ongoing effort to provide geologic information in a geographic information system (GIS) for use in spatial analysis. The resulting digital geologic map database data can be queried in many ways to produce a variety of geologic maps and derivative products. Digital base map data (topography, roads, towns, rivers, lakes, and so forth) are not included; they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:125,000 (for example, 1:100,000 or 1:24,000). The digital geologic map plot files that are provided herein are representations of the database. The map area is located in southern Arizona. This report lists the geologic map units, the methods used to convert the geologic map data into a digital format, the ArcInfo GIS file structures and relationships, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet. The manuscript and digital data review by Lorre Moyer (USGS) is greatly appreciated.

Optimal slew path planning for the Sino-French Space-based multiband astronomical Variable Objects Monitor mission

NASA Astrophysics Data System (ADS)

She, Yuchen; Li, Shuang

2018-01-01

The planning algorithm to calculate a satellite's optimal slew trajectory with a given keep-out constraint is proposed. An energy-optimal formulation is proposed for the Space-based multiband astronomical Variable Objects Monitor Mission Analysis and Planning (MAP) system. The innovative point of the proposed planning algorithm lies in that the satellite structure and control limitation are not considered as optimization constraints but are formulated into the cost function. This modification is able to relieve the burden of the optimizer and increases the optimization efficiency, which is the major challenge for designing the MAP system. Mathematical analysis is given to prove that there is a proportional mapping between the formulation and the satellite controller output. Simulations with different scenarios are given to demonstrate the efficiency of the developed algorithm.

Likelihood-based modification of experimental crystal structure electron density maps

DOEpatents

Terwilliger, Thomas C [Sante Fe, NM

2005-04-16

A maximum-likelihood method for improves an electron density map of an experimental crystal structure. A likelihood of a set of structure factors {F.sub.h } is formed for the experimental crystal structure as (1) the likelihood of having obtained an observed set of structure factors {F.sub.h.sup.OBS } if structure factor set {F.sub.h } was correct, and (2) the likelihood that an electron density map resulting from {F.sub.h } is consistent with selected prior knowledge about the experimental crystal structure. The set of structure factors {F.sub.h } is then adjusted to maximize the likelihood of {F.sub.h } for the experimental crystal structure. An improved electron density map is constructed with the maximized structure factors.

The Evolution of Dwarf-Irregular Galaxy NGC 1569: A Kinematic Study of the Stars and Gas

NASA Astrophysics Data System (ADS)

Johnson, Megan C.

2011-12-01

The evolution and formation of dwarf galaxies has great importance to our knowledge of cosmological history from the Big Bang through the present day structure we observe in our local universe. Dwarf galaxies are believed to be the "building blocks" of larger galaxies, which implies that interactions and mergers of these small systems must have occurred frequently in the early universe. There is a population of starburst dwarf irregular (dIm) galaxies that seem to have characteristics indicative of interactions or mergers. One of these dIm galaxies is the nearby post-starburst NGC 1569. This dissertation project explores the stellar and gas kinematics of NGC 1569 as well as examines a deep neutral Hydrogen (HI) map made using the Robert C. Byrd Green Bank Telescope (GBT). From these observations, this dissertation analyzes the evolution of NGC 1569 by understanding the three-dimensional shape of this dIm system for the first time. The structure of dIm galaxies is an important fundamental, physical property necessary to understand the evolution and formation of these common systems. However, the intrinsic shape of dIm galaxies remains controversial. Projected minor-to-major axis ratios provide insufficient data to determine the shapes of dIm galaxies. Fortunately, there is another method by which accurate structures can be measured. The stellar velocity dispersion, coupled with the maximum rotational velocity derived from HI observations, gives a measure of how kinematically hot a system is, and, therefore, indicates its structure. In this dissertation, we present the stellar kinematics, including the stellar velocity dispersion, of NGC 1569 obtained using the Kitt Peak National Observatory (KPNO) Mayall 4-m+Echelle spectrograph. These data are combined with an in depth analysis of high resolution HI data and a discussion of the nature of this starburst dwarf system. The dissertation concludes with a deep HI map of NGC 1569 and three of its nearest neighbors in the IC 342 galaxy group. Extended HI structures are observed in this map and are likely associated with NGC 1569. However, distinguishing if these structures are from an interaction or a merger is not possible and hydrodynamic simulations are needed. These simulations are for future work.

Camera system for multispectral imaging of documents

NASA Astrophysics Data System (ADS)

Christens-Barry, William A.; Boydston, Kenneth; France, Fenella G.; Knox, Keith T.; Easton, Roger L., Jr.; Toth, Michael B.

2009-02-01

A spectral imaging system comprising a 39-Mpixel monochrome camera, LED-based narrowband illumination, and acquisition/control software has been designed for investigations of cultural heritage objects. Notable attributes of this system, referred to as EurekaVision, include: streamlined workflow, flexibility, provision of well-structured data and metadata for downstream processing, and illumination that is safer for the artifacts. The system design builds upon experience gained while imaging the Archimedes Palimpsest and has been used in studies of a number of important objects in the LOC collection. This paper describes practical issues that were considered by EurekaVision to address key research questions for the study of fragile and unique cultural objects over a range of spectral bands. The system is intended to capture important digital records for access by researchers, professionals, and the public. The system was first used for spectral imaging of the 1507 world map by Martin Waldseemueller, the first printed map to reference "America." It was also used to image sections of the Carta Marina 1516 map by the same cartographer for comparative purposes. An updated version of the system is now being utilized by the Preservation Research and Testing Division of the Library of Congress.

Synthetic Modeling of A Geothermal System Using Audio-magnetotelluric (AMT) and Magnetotelluric (MT)

NASA Astrophysics Data System (ADS)

Mega Saputra, Rifki; Widodo

2017-04-01

Indonesia has 40% of the world’s potential geothermal resources with estimated capacity of 28,910 MW. Generally, the characteristic of the geothermal system in Indonesia is liquid-dominated systems, which driven by volcanic activities. In geothermal exploration, electromagnetic methods are used to map structures that could host potential reservoirs and source rocks. We want to know the responses of a geothermal system using synthetic data of Audio-magnetotelluric (AMT) and Magnetotelluric (MT). Due to frequency range, AMT and MT data can resolve the shallow and deeper structure, respectively. 1-D models have been performed using AMT and MT data. The results indicate that AMT and MT data give detailed conductivity distribution of geothermal structure.

LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures.

PubMed

Ryan, Michael; Diekhans, Mark; Lien, Stephanie; Liu, Yun; Karchin, Rachel

2009-06-01

LS-SNP/PDB is a new WWW resource for genome-wide annotation of human non-synonymous (amino acid changing) SNPs. It serves high-quality protein graphics rendered with UCSF Chimera molecular visualization software. The system is kept up-to-date by an automated, high-throughput build pipeline that systematically maps human nsSNPs onto Protein Data Bank structures and annotates several biologically relevant features. LS-SNP/PDB is available at (http://ls-snp.icm.jhu.edu/ls-snp-pdb) and via links from protein data bank (PDB) biology and chemistry tabs, UCSC Genome Browser Gene Details and SNP Details pages and PharmGKB Gene Variants Downloads/Cross-References pages.

Observing Quantum Monodromy: AN Energy-Momentum Map Built from Experimentally-Determined Level Energies Obtained from the νb{7} Far-Infrared Band System of Ncncs

NASA Astrophysics Data System (ADS)

Tokaryk, Dennis W.; Ross, Stephen Cary; Winnewisser, Brenda P.; Winnewisser, Manfred; De Lucia, Frank C.; Billinghurst, Brant E.

2016-06-01

The concept of Quantum Monodromy (QM) provides a fresh insight into the structure of rovibrational levels in those flexible molecules for which a bending mode can carry the molecule through the linear configuration. To confirm the existence of QM in a molecule required the fruits of several strands of development: the formulation of the abstract mathematical concept of monodromy, including the exploration of its relevance to systems described by classical mechanics and its manifestation in quantum molecular applications; the development of the required spectroscopic technology and computer-aided assignment; and the development of a theoretical model to apply in fitting to the observed data. We present a timeline for each of these strands, converging in our initial confirmation of QM in NCNCS from pure rotational data alone. In that work a Generalised SemiRigid Bender (GSRB) Hamiltonian was fitted to the experimental rotational structure. Rovibrational energies calculated from the fitted GSRB parameters allowed us to construct an ``Energy-Momentum" map and confirm the presence of QM in NCNCS. In further experimental work at the Canadian Light Source Synchrotron we have identified a network of transitions directly connecting the relevant energy levels and thereby have produced a refined Energy Momentum map for NCNCS from experimental measurements alone. This map extends from the ground vibrational level to well above the potential energy barrier, beautifully illustrating the characteristic signature of QM in a system uncomplicated by interaction with other vibrational modes. B. P. Winnewisser et al., Phys. Rev. Lett. 95, 243002 (2005)

Sequence-structure mapping errors in the PDB: OB-fold domains

PubMed Central

Venclovas, Česlovas; Ginalski, Krzysztof; Kang, Chulhee

2004-01-01

The Protein Data Bank (PDB) is the single most important repository of structural data for proteins and other biologically relevant molecules. Therefore, it is critically important to keep the PDB data, as much as possible, error-free. In this study, we have analyzed PDB crystal structures possessing oligonucleotide/oligosaccharide binding (OB)-fold, one of the highly populated folds, for the presence of sequence-structure mapping errors. Using energy-based structure quality assessment coupled with sequence analyses, we have found that there are at least five OB-structures in the PDB that have regions where sequences have been incorrectly mapped onto the structure. We have demonstrated that the combination of these computation techniques is effective not only in detecting sequence-structure mapping errors, but also in providing guidance to correct them. Namely, we have used results of computational analysis to direct a revision of X-ray data for one of the PDB entries containing a fairly inconspicuous sequence-structure mapping error. The revised structure has been deposited with the PDB. We suggest use of computational energy assessment and sequence analysis techniques to facilitate structure determination when homologs having known structure are available to use as a reference. Such computational analysis may be useful in either guiding the sequence-structure assignment process or verifying the sequence mapping within poorly defined regions. PMID:15133161

Geological mapping of the Kuiper quadrangle (H06) of Mercury

NASA Astrophysics Data System (ADS)

Giacomini, Lorenza; Massironi, Matteo; Galluzzi, Valentina

2017-04-01

Kuiper quadrangle (H06) is located at the equatorial zone of Mercury and encompasses the area between longitudes 288°E - 360°E and latitudes 22.5°N - 22.5°S. The quadrangle was previously mapped for its most part by De Hon et al. (1981) that, using Mariner10 data, produced a final 1:5M scale map of the area. In this work we present the preliminary results of a more detailed geological map (1:3M scale) of the Kuiper quadrangle that we compiled using the higher resolution of MESSENGER data. The main basemap used for the mapping is the MDIS (Mercury Dual Imaging System) 166 m/pixel BDR (map-projected Basemap reduced Data Record) mosaic. Additional datasets were also taken into account, such as DLR stereo-DEM of the region (Preusker et al., 2016), global mosaics with high-incidence illumination from the east and west (Chabot et al., 2016) and MDIS global color mosaic (Denevi et al., 2016). The preliminary geological map shows that the western part of the quadrangle is characterized by a prevalence of crater materials (i.e. crater floor, crater ejecta) which were distinguished into three classes on the basis of their degradation degree (Galluzzi et al., 2016). Different plain units were also identified and classified as: (i) intercrater plains, represented by densely cratered terrains, (ii) intermediate plains, which are terrains with a moderate density of superposed craters, and (iii) smooth plains, which are poorly cratered volcanic deposits emplaced mainly on the larger crater floors. Finally, several structures were mapped all over the quadrangle. Most of these features are represented by thrusts, some of which appear to form systematic alignments. In particular, two main thrust systems have been identified: i) the "Thakur" system, a 1500 km-long system including several scarps with a NNE-SSW orientation, located at the edge between the Kuiper and Beethoven (H07) quadrangles; ii) the "Santa Maria" system, located at the centre of the quadrangle. It is a 1700 km-long system encompassing faults with a prevalent NNW-SSE orientation. Once the mapping activity is accomplished, the geological map of Kuiper quadrangle will be integrated into the global 1:3M geological map of Mercury (Galluzzi et al., 2017). References Chabot et al., 2016, LPS XLVII, #1256. De Hon et al., 1981, IMAP #1233. Denevi et al., 2016 LPS XLVII, #1264. Galluzzi et al., 2016, Geology, J. Maps, 12, 226-238. Galluzzi et al., 2017, EGU General Assembly 2017, #13822. Preusker et al., 2016, Earth and Planet. Astrophys., arXiv:1608.08487.

LETTER TO THE EDITOR: Fractal diffusion coefficient from dynamical zeta functions

NASA Astrophysics Data System (ADS)

Cristadoro, Giampaolo

2006-03-01

Dynamical zeta functions provide a powerful method to analyse low-dimensional dynamical systems when the underlying symbolic dynamics is under control. On the other hand, even simple one-dimensional maps can show an intricate structure of the grammar rules that may lead to a non-smooth dependence of global observables on parameters changes. A paradigmatic example is the fractal diffusion coefficient arising in a simple piecewise linear one-dimensional map of the real line. Using the Baladi-Ruelle generalization of the Milnor-Thurnston kneading determinant, we provide the exact dynamical zeta function for such a map and compute the diffusion coefficient from its smallest zero.

Navigating 3D electron microscopy maps with EM-SURFER.

PubMed

Esquivel-Rodríguez, Juan; Xiong, Yi; Han, Xusi; Guang, Shuomeng; Christoffer, Charles; Kihara, Daisuke

2015-05-30

The Electron Microscopy DataBank (EMDB) is growing rapidly, accumulating biological structural data obtained mainly by electron microscopy and tomography, which are emerging techniques for determining large biomolecular complex and subcellular structures. Together with the Protein Data Bank (PDB), EMDB is becoming a fundamental resource of the tertiary structures of biological macromolecules. To take full advantage of this indispensable resource, the ability to search the database by structural similarity is essential. However, unlike high-resolution structures stored in PDB, methods for comparing low-resolution electron microscopy (EM) density maps in EMDB are not well established. We developed a computational method for efficiently searching low-resolution EM maps. The method uses a compact fingerprint representation of EM maps based on the 3D Zernike descriptor, which is derived from a mathematical series expansion for EM maps that are considered as 3D functions. The method is implemented in a web server named EM-SURFER, which allows users to search against the entire EMDB in real-time. EM-SURFER compares the global shapes of EM maps. Examples of search results from different types of query structures are discussed. We developed EM-SURFER, which retrieves structurally relevant matches for query EM maps from EMDB within seconds. The unique capability of EM-SURFER to detect 3D shape similarity of low-resolution EM maps should prove invaluable in structural biology.

Photo-multiplier Tube Based Hybrid MRI and Frequency Domain Fluorescence Tomography System for Small Animal Imaging

PubMed Central

Lin, Y; Ghijsen, M T; Gao, H; Liu, N; Nalcioglu, O; Gulsen, G

2014-01-01

Fluorescence tomography (FT) is a promising molecular imaging technique that can spatially resolve both fluorophore concentration and lifetime parameters. However, recovered fluorophore parameters highly depend on the size and depth of the object due to the ill-posedness of the FT inverse problem. Structural a priori information from another high spatial resolution imaging modality has been demonstrated to significantly improve FT reconstruction accuracy. In this study, we have constructed a combined magnetic resonance imaging (MRI) and FT system for small animal imaging. A photo-multiplier tube (PMT) is used as the detector to acquire frequency domain FT measurements. This is the first MR-compatible time-resolved FT system that can reconstruct both fluorescence concentration and lifetime maps simultaneously. The performance of the hybrid system is evaluated with phantom studies. Two different fluorophores, Indocyanine Green (ICG) and 3-3′ Diethylthiatricarbocyanine Iodide (DTTCI), which have similar excitation and emission spectra but different lifetimes, are utilized. The fluorescence concentration and lifetime maps are both reconstructed with and without the structural a priori information obtained from MRI for comparison. We show that the hybrid system can accurately recover both fluorescence intensity and lifetime within 10% error for two 4.2 mm-diameter cylindrical objects embedded in a 38 mm-diameter cylindrical phantom when MRI structural a priori information is utilized. PMID:21753235

Combining automated peak tracking in SAR by NMR with structure-based backbone assignment from 15N-NOESY

PubMed Central

2012-01-01

Background Chemical shift mapping is an important technique in NMR-based drug screening for identifying the atoms of a target protein that potentially bind to a drug molecule upon the molecule's introduction in increasing concentrations. The goal is to obtain a mapping of peaks with known residue assignment from the reference spectrum of the unbound protein to peaks with unknown assignment in the target spectrum of the bound protein. Although a series of perturbed spectra help to trace a path from reference peaks to target peaks, a one-to-one mapping generally is not possible, especially for large proteins, due to errors, such as noise peaks, missing peaks, missing but then reappearing, overlapped, and new peaks not associated with any peaks in the reference. Due to these difficulties, the mapping is typically done manually or semi-automatically, which is not efficient for high-throughput drug screening. Results We present PeakWalker, a novel peak walking algorithm for fast-exchange systems that models the errors explicitly and performs many-to-one mapping. On the proteins: hBclXL, UbcH5B, and histone H1, it achieves an average accuracy of over 95% with less than 1.5 residues predicted per target peak. Given these mappings as input, we present PeakAssigner, a novel combined structure-based backbone resonance and NOE assignment algorithm that uses just 15N-NOESY, while avoiding TOCSY experiments and 13C-labeling, to resolve the ambiguities for a one-to-one mapping. On the three proteins, it achieves an average accuracy of 94% or better. Conclusions Our mathematical programming approach for modeling chemical shift mapping as a graph problem, while modeling the errors directly, is potentially a time- and cost-effective first step for high-throughput drug screening based on limited NMR data and homologous 3D structures. PMID:22536902

Complexity and dynamics of topological and community structure in complex networks

NASA Astrophysics Data System (ADS)

Berec, Vesna

2017-07-01

Complexity is highly susceptible to variations in the network dynamics, reflected on its underlying architecture where topological organization of cohesive subsets into clusters, system's modular structure and resulting hierarchical patterns, are cross-linked with functional dynamics of the system. Here we study connection between hierarchical topological scales of the simplicial complexes and the organization of functional clusters - communities in complex networks. The analysis reveals the full dynamics of different combinatorial structures of q-th-dimensional simplicial complexes and their Laplacian spectra, presenting spectral properties of resulting symmetric and positive semidefinite matrices. The emergence of system's collective behavior from inhomogeneous statistical distribution is induced by hierarchically ordered topological structure, which is mapped to simplicial complex where local interactions between the nodes clustered into subcomplexes generate flow of information that characterizes complexity and dynamics of the full system.

Retinal Structure of Birds of Prey Revealed by Ultra-High Resolution Spectral-Domain Optical Coherence Tomography

PubMed Central

Ruggeri, Marco; Major, James C.; McKeown, Craig; Knighton, Robert W.; Puliafito, Carmen A.

2010-01-01

Purpose. To reveal three-dimensional (3-D) information about the retinal structures of birds of prey in vivo. Methods. An ultra-high resolution spectral-domain optical coherence tomography (SD-OCT) system was built for in vivo imaging of retinas of birds of prey. The calibrated imaging depth and axial resolution of the system were 3.1 mm and 2.8 μm (in tissue), respectively. 3-D segmentation was performed for calculation of the retinal nerve fiber layer (RNFL) map. Results. High-resolution OCT images were obtained of the retinas of four species of birds of prey: two diurnal hawks (Buteo platypterus and Buteo brachyurus) and two nocturnal owls (Bubo virginianus and Strix varia). These images showed the detailed retinal anatomy, including the retinal layers and the structure of the deep and shallow foveae. The calculated thickness map showed the RNFL distribution. Traumatic injury to one bird's retina was also successfully imaged. Conclusions. Ultra-high resolution SD-OCT provides unprecedented high-quality 2-D and 3-D in vivo visualization of the retinal structures of birds of prey. SD-OCT is a powerful imaging tool for vision research in birds of prey. PMID:20554605

The Topography Tub Learning Activity

NASA Astrophysics Data System (ADS)

Glesener, G. B.

2014-12-01

Understanding the basic elements of a topographic map (i.e. contour lines and intervals) is just a small part of learning how to use this abstract representational system as a resource in geologic mapping. Interpretation of a topographic map and matching its features with real-world structures requires that the system is utilized for visualizing the shapes of these structures and their spatial orientation. To enrich students' skills in visualizing topography from topographic maps a spatial training activity has been developed that uses 3D objects of various shapes and sizes, a sighting tool, a plastic basin, water, and transparencies. In the first part of the activity, the student is asked to draw a topographic map of one of the 3D objects. Next, the student places the object into a plastic tub in which water is added to specified intervals of height. The shoreline at each interval is used to reference the location of the contour line the student draws on a plastic inkjet transparency directly above the object. A key part of this activity is the use of a sighting tool by the student to assist in keeping the pencil mark directly above the shoreline. It (1) ensures the accurate positioning of the contour line and (2) gives the learner experience with using a sight before going out into the field. Finally, after the student finishes drawing the contour lines onto the transparency, the student can compare and contrast the two maps in order to discover where improvements in their visualization of the contours can be made. The teacher and/or peers can also make suggestions on ways to improve. A number of objects with various shapes and sizes are used in this exercise to produce contour lines representing the different types of topography the student may encounter while field mapping. The intended outcome from using this visualization training activity is improvement in performance of visualizing topography as the student moves between the topographic representation and corresponding topography in the field.

Reverse bifurcation and fractal of the compound logistic map

NASA Astrophysics Data System (ADS)

Wang, Xingyuan; Liang, Qingyong

2008-07-01

The nature of the fixed points of the compound logistic map is researched and the boundary equation of the first bifurcation of the map in the parameter space is given out. Using the quantitative criterion and rule of chaotic system, the paper reveal the general features of the compound logistic map transforming from regularity to chaos, the following conclusions are shown: (1) chaotic patterns of the map may emerge out of double-periodic bifurcation and (2) the chaotic crisis phenomena and the reverse bifurcation are found. At the same time, we analyze the orbit of critical point of the compound logistic map and put forward the definition of Mandelbrot-Julia set of compound logistic map. We generalize the Welstead and Cromer's periodic scanning technology and using this technology construct a series of Mandelbrot-Julia sets of compound logistic map. We investigate the symmetry of Mandelbrot-Julia set and study the topological inflexibility of distributing of period region in the Mandelbrot set, and finds that Mandelbrot set contain abundant information of structure of Julia sets by founding the whole portray of Julia sets based on Mandelbrot set qualitatively.

Digital geologic map of part of the Thompson Falls 1:100,000 quadrangle, Idaho

USGS Publications Warehouse

Lewis, Reed S.; Derkey, Pamela D.

1999-01-01

The geology of the Thompson Falls 1:100,000 quadrangle, Idaho was compiled by Reed S. Lewis in 1997 onto a 1:100,000-scale greenline mylar of the topographic base map for input into a geographic information system (GIS). The resulting digital geologic map GIS can be queried in many ways to produce a variety of geologic maps. Digital base map data files (topography, roads, towns, rivers and lakes, etc.) are not included: they may be obtained from a variety of commercial and government sources. This database is not meant to be used or displayed at any scale larger than 1:100,000 (e.g., 1:62,500 or 1:24,000). The map area is located in north Idaho. This open-file report describes the geologic map units, the methods used to convert the geologic map data into a digital format, the Arc/Info GIS file structures and relationships, and explains how to download the digital files from the U.S. Geological Survey public access World Wide Web site on the Internet.

Parallel algorithms for mapping pipelined and parallel computations

NASA Technical Reports Server (NTRS)

Nicol, David M.

1988-01-01

Many computational problems in image processing, signal processing, and scientific computing are naturally structured for either pipelined or parallel computation. When mapping such problems onto a parallel architecture it is often necessary to aggregate an obvious problem decomposition. Even in this context the general mapping problem is known to be computationally intractable, but recent advances have been made in identifying classes of problems and architectures for which optimal solutions can be found in polynomial time. Among these, the mapping of pipelined or parallel computations onto linear array, shared memory, and host-satellite systems figures prominently. This paper extends that work first by showing how to improve existing serial mapping algorithms. These improvements have significantly lower time and space complexities: in one case a published O(nm sup 3) time algorithm for mapping m modules onto n processors is reduced to an O(nm log m) time complexity, and its space requirements reduced from O(nm sup 2) to O(m). Run time complexity is further reduced with parallel mapping algorithms based on these improvements, which run on the architecture for which they create the mappings.

Hypogeal geological survey in the "Grotta del Re Tiberio" natural cave (Apennines, Italy): a valid tool for reconstructing the structural setting

NASA Astrophysics Data System (ADS)

Ghiselli, Alice; Merazzi, Marzio; Strini, Andrea; Margutti, Roberto; Mercuriali, Michele

2011-06-01

As karst systems are natural windows to the underground, speleology, combined with geological surveys, can be useful tools for helping understand the geological evolution of karst areas. In order to enhance the reconstruction of the structural setting in a gypsum karst area (Vena del Gesso, Romagna Apennines), a detailed analysis has been carried out on hypogeal data. Structural features (faults, fractures, tectonic foliations, bedding) have been mapped in the "Grotta del Re Tiberio" cave, in the nearby gypsum quarry tunnels and open pit benches. Five fracture systems and six fault systems have been identified. The fault systems have been further analyzed through stereographic projections and geometric-kinematic evaluations in order to reconstruct the relative chronology of these structures. This analysis led to the detection of two deformation phases. The results permitted linking of the hypogeal data with the surface data both at a local and regional scale. At the local scale, fracture data collected in the underground have been compared with previous authors' surface data coming from the quarry area. The two data sets show a very good correspondence, as every underground fracture system matches with one of the surface fracture system. Moreover, in the cave, a larger number of fractures belonging to each system could be mapped. At the regional scale, the two deformation phases detected can be integrated in the structural setting of the study area, thereby enhancing the tectonic interpretation of the area ( e.g., structures belonging to a new deformation phase, not reported before, have been identified underground). The structural detailed hypogeal survey has, thus, provided very useful data, both by integrating the existing information and revealing new data not detected at the surface. In particular, some small structures ( e.g., displacement markers and short fractures) are better preserved in the hypogeal environment than on the surface where the outcropping gypsum is more exposed to dissolution and recrystallization. The hypogeal geological survey, therefore, can be considered a powerful tool for integrating the surface and log data in order to enhance the reconstruction of the deformational history and to get a three-dimensional model of the bedrock in karst areas.

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm.

PubMed

Ethier, Jean-François; Dameron, Olivier; Curcin, Vasa; McGilchrist, Mark M; Verheij, Robert A; Arvanitis, Theodoros N; Taweel, Adel; Delaney, Brendan C; Burgun, Anita

2013-01-01

Biomedical research increasingly relies on the integration of information from multiple heterogeneous data sources. Despite the fact that structural and terminological aspects of interoperability are interdependent and rely on a common set of requirements, current efforts typically address them in isolation. We propose a unified ontology-based knowledge framework to facilitate interoperability between heterogeneous sources, and investigate if using the LexEVS terminology server is a viable implementation method. We developed a framework based on an ontology, the general information model (GIM), to unify structural models and terminologies, together with relevant mapping sets. This allowed a uniform access to these resources within LexEVS to facilitate interoperability by various components and data sources from implementing architectures. Our unified framework has been tested in the context of the EU Framework Program 7 TRANSFoRm project, where it was used to achieve data integration in a retrospective diabetes cohort study. The GIM was successfully instantiated in TRANSFoRm as the clinical data integration model, and necessary mappings were created to support effective information retrieval for software tools in the project. We present a novel, unifying approach to address interoperability challenges in heterogeneous data sources, by representing structural and semantic models in one framework. Systems using this architecture can rely solely on the GIM that abstracts over both the structure and coding. Information models, terminologies and mappings are all stored in LexEVS and can be accessed in a uniform manner (implementing the HL7 CTS2 service functional model). The system is flexible and should reduce the effort needed from data sources personnel for implementing and managing the integration.

Predicting climate change: Uncertainties and prospects for surmounting them

NASA Astrophysics Data System (ADS)

Ghil, Michael

2008-03-01

General circulation models (GCMs) are among the most detailed and sophisticated models of natural phenomena in existence. Still, the lack of robust and efficient subgrid-scale parametrizations for GCMs, along with the inherent sensitivity to initial data and the complex nonlinearities involved, present a major and persistent obstacle to narrowing the range of estimates for end-of-century warming. Estimating future changes in the distribution of climatic extrema is even more difficult. Brute-force tuning the large number of GCM parameters does not appear to help reduce the uncertainties. Andronov and Pontryagin (1937) proposed structural stability as a way to evaluate model robustness. Unfortunately, many real-world systems proved to be structurally unstable. We illustrate these concepts with a very simple model for the El Niño--Southern Oscillation (ENSO). Our model is governed by a differential delay equation with a single delay and periodic (seasonal) forcing. Like many of its more or less detailed and realistic precursors, this model exhibits a Devil's staircase. We study the model's structural stability, describe the mechanisms of the observed instabilities, and connect our findings to ENSO phenomenology. In the model's phase-parameter space, regions of smooth dependence on parameters alternate with rough, fractal ones. We then apply the tools of random dynamical systems and stochastic structural stability to the circle map and a torus map. The effect of noise with compact support on these maps is fairly intuitive: it is the most robust structures in phase-parameter space that survive the smoothing introduced by the noise. The nature of the stochastic forcing matters, thus suggesting that certain types of stochastic parametrizations might be better than others in achieving GCM robustness. This talk represents joint work with M. Chekroun, E. Simonnet and I. Zaliapin.

A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm

PubMed Central

Ethier, Jean-François; Dameron, Olivier; Curcin, Vasa; McGilchrist, Mark M; Verheij, Robert A; Arvanitis, Theodoros N; Taweel, Adel; Delaney, Brendan C; Burgun, Anita

2013-01-01

Objective Biomedical research increasingly relies on the integration of information from multiple heterogeneous data sources. Despite the fact that structural and terminological aspects of interoperability are interdependent and rely on a common set of requirements, current efforts typically address them in isolation. We propose a unified ontology-based knowledge framework to facilitate interoperability between heterogeneous sources, and investigate if using the LexEVS terminology server is a viable implementation method. Materials and methods We developed a framework based on an ontology, the general information model (GIM), to unify structural models and terminologies, together with relevant mapping sets. This allowed a uniform access to these resources within LexEVS to facilitate interoperability by various components and data sources from implementing architectures. Results Our unified framework has been tested in the context of the EU Framework Program 7 TRANSFoRm project, where it was used to achieve data integration in a retrospective diabetes cohort study. The GIM was successfully instantiated in TRANSFoRm as the clinical data integration model, and necessary mappings were created to support effective information retrieval for software tools in the project. Conclusions We present a novel, unifying approach to address interoperability challenges in heterogeneous data sources, by representing structural and semantic models in one framework. Systems using this architecture can rely solely on the GIM that abstracts over both the structure and coding. Information models, terminologies and mappings are all stored in LexEVS and can be accessed in a uniform manner (implementing the HL7 CTS2 service functional model). The system is flexible and should reduce the effort needed from data sources personnel for implementing and managing the integration. PMID:23571850

Geologic and geophysical maps of the Las Vegas 30' x 60' quadrangle, Clark and Nye counties, Nevada, and Inyo County, California

USGS Publications Warehouse

Page, William R.; Lundstrom, Scott C.; Harris, Anita G.; Langenheim, V.E.; Workman, Jeremiah B.; Mahan, Shannon; Paces, James B.; Dixon, Gary L.; Rowley, Peter D.; Burchfiel, B.C.; Bell, John W.; Smith, Eugene I.

2005-01-01

Las Vegas and Pahrump are two of the fastest growing cities in the US, and the shortage of water looms as among the greatest future problems for these cities. These new maps of the Las Vegas 30 x 60-minute quadrangle provide a geologic and geophysical framework and fundamental earth science database needed to address societal issues such as ground water supply and contamination, surface flood, landslide, and seismic hazards, and soil properties and their changing impact by and on urbanization. The mountain ranges surrounding Las Vegas and Pahrump consist of Mesozoic, Paleozoic and Proterozoic rocks. A majority of these rocks are Paleozoic carbonate rocks that are part of Nevada's carbonate rock aquifer province. The Spring Mountains represent a major recharge site in the province, where maximum altitude is 3,632 m (Charleston Peak) above sea level. Rocks in the Sheep and Las Vegas Ranges and Spring Mountains contain correlative, northeast-striking, southeast-verging thrust faults that are part of the Cretaceous, Sevier orogenic belt. These thrusts were offset during the Miocene by the Las Vegas Valley shear system (LVVSZ). We conducted new mapping in the Blue Diamond area, highlighting refined work on the Bird Spring thrust, newly studied ancient landslides, and gravity-slide blocks. We conducted new mapping in the Las Vegas Range and mapped previously unrecognized structures such as the Valley thrust and fold belt; recognition of these structures has led to a refined correlation of Mesozoic thrust faults across the LVVSZ. New contributions in the quadrangle also include a greatly refined stratigraphy of Paleozoic bedrock units based on conodont biostragraphy. We collected over 200 conodont samples in the quadrangle and established stratigraphic reference sections used to correlate units across the major Mesozoic thrust faults. Quaternary deposits cover about half of the map area and underlie most of the present urbanized area. Deposits consist of large coalescing alluvial fans that grade downslope to extensive areas of fine-grained sediment indicative of groundwater-discharge during the Pleistocene. In the central areas of Las Vegas and Pahrump valleys, Quaternary fault scarps associated with past ground-water discharge deposits suggest a genetic relationship. In collaboration with NBMG and University of Nevada, a variety of ages of gravelly alluvium are newly mapped using surficial characteristics and soil development, along with reassessment of previously published mapping during compilation. Reconnaissance geochronology (thermoluminescence and U-series) of eolian and authigenic components of surficial and buried soils and spring deposits is applied to test hypotheses of geomorphic and hydrologic response to climate change over the past 100 k.y.). The major structure in the Las Vegas quadrangle is the LVVSZ. Because the LVVSZ is concealed by thick basin-fill deposits of Quaternary and Tertiary age, it was characterized primarily based on geophysics. Likewise, the newly described State line fault system in Pahrump Valley has also been characterized by geophysics, where geophysically inferred structures correlate remarkably with surface structures defined by our new geologic mapping in the Mound Spring and Hidden Hills Ranch 7.5-minute quadrangles.

Developing Visualization Techniques for Semantics-based Information Networks

NASA Technical Reports Server (NTRS)

Keller, Richard M.; Hall, David R.

2003-01-01

Information systems incorporating complex network structured information spaces with a semantic underpinning - such as hypermedia networks, semantic networks, topic maps, and concept maps - are being deployed to solve some of NASA s critical information management problems. This paper describes some of the human interaction and navigation problems associated with complex semantic information spaces and describes a set of new visual interface approaches to address these problems. A key strategy is to leverage semantic knowledge represented within these information spaces to construct abstractions and views that will be meaningful to the human user. Human-computer interaction methodologies will guide the development and evaluation of these approaches, which will benefit deployed NASA systems and also apply to information systems based on the emerging Semantic Web.

Mutations affecting transport of the hexitols D-mannitol, D-glucitol, and galactitol in Escherichia coli K-12: isolation and mapping.

PubMed Central

Lengeler, J

1975-01-01

Mutants of Escherichia coli K-12 unable to grow on any of the three naturally occurring hexitols D-manitol, D-glucitol, and galactitol and, among these specifically, mutants with altered transport and phosphorylating activity have been isolated. Different isolation procedures have been utilized, including suicide by D-[3H]mannitol, chemotaxis, and resistance to the toxic hexitol analogue 2-deoxy-arabino-hexitol. Mutations thus obtained have been mapped in four distinct operons. (i) Mutations affecting an enzyme II-complexmt1 activity of the phosphoenolpyruvate-dependent phosphotransferase system all map in gene mtlA. This gene has previously been shown (Solomon and Lin, 1972) to be part of an operon, mtl, located at 71 min on the E. coli linkage map containing, in addition to mtlA, the cis-dominant regulatory gene mtlC and mtlD, the structural gene for the enzyme D-mannitol-1-phosphate dehydrogenase. The gene order in this operon, induced by D-mannitol, is mtlC A D. (ii) Mutations in gene gutA affecting a second enzyme II-complexgut of the phosphotransferase system map at 51 min, clustered in operon gutC A D together with the cis-dominant regulatory gene gutC and the structural gene gutD for the enzyme D-glucitol-6-phosphate dehydrogenase. The gut operon, previously called sbl or srl, is induced by D-glucitol. (iii) Mutations affecting the transport and catabolism of galactitol are clustered in a third operon, gatC A D, located at 40.5 min. This operon again contains a cis-dominant regulatory gene, gatC, the structural gene gatD for galactitol-1-phosphate dehydrogenase, and gene gatA coding for a thrid hexitol-specific enzyme II-complexgat. Other genes coding for two additional enzymes involved in galactitol catabolism apparently are not linked to gatC A D. (iv) A fourth class of mutants pleiotropically negative for hexitol growth and transport maps in the pts operon. Triple-negative mutants (mtlA gutA gatA) do not have further transport or phosphorylating activity for any of the three hexitols. PMID:1100602

Numerical Aspects of Eigenvalue and Eigenfunction Computations for Chaotic Quantum Systems

NASA Astrophysics Data System (ADS)

Bäcker, A.

Summary: We give an introduction to some of the numerical aspects in quantum chaos. The classical dynamics of two-dimensional area-preserving maps on the torus is illustrated using the standard map and a perturbed cat map. The quantization of area-preserving maps given by their generating function is discussed and for the computation of the eigenvalues a computer program in Python is presented. We illustrate the eigenvalue distribution for two types of perturbed cat maps, one leading to COE and the other to CUE statistics. For the eigenfunctions of quantum maps we study the distribution of the eigenvectors and compare them with the corresponding random matrix distributions. The Husimi representation allows for a direct comparison of the localization of the eigenstates in phase space with the corresponding classical structures. Examples for a perturbed cat map and the standard map with different parameters are shown. Billiard systems and the corresponding quantum billiards are another important class of systems (which are also relevant to applications, for example in mesoscopic physics). We provide a detailed exposition of the boundary integral method, which is one important method to determine the eigenvalues and eigenfunctions of the Helmholtz equation. We discuss several methods to determine the eigenvalues from the Fredholm equation and illustrate them for the stadium billiard. The occurrence of spurious solutions is discussed in detail and illustrated for the circular billiard, the stadium billiard, and the annular sector billiard. We emphasize the role of the normal derivative function to compute the normalization of eigenfunctions, momentum representations or autocorrelation functions in a very efficient and direct way. Some examples for these quantities are given and discussed.

Geologic Map of the Summit Region of Kilauea Volcano, Hawaii

USGS Publications Warehouse

Neal, Christina A.; Lockwood, John P.

2003-01-01

This report consists of a large map sheet and a pamphlet. The map shows the geology, some photographs, description of map units, and correlation of map units. The pamphlet gives the full text about the geologic map. The area covered by this map includes parts of four U.S. Geological Survey 7.5' topographic quadrangles (Kilauea Crater, Volcano, Ka`u Desert, and Makaopuhi). It encompasses the summit, upper rift zones, and Koa`e Fault System of Kilauea Volcano and a part of the adjacent, southeast flank of Mauna Loa Volcano. The map is dominated by products of eruptions from Kilauea Volcano, the southernmost of the five volcanoes on the Island of Hawai`i and one of the world's most active volcanoes. At its summit (1,243 m) is Kilauea Crater, a 3 km-by-5 km collapse caldera that formed, possibly over several centuries, between about 200 and 500 years ago. Radiating away from the summit caldera are two linear zones of intrusion and eruption, the east and the southwest rift zones. Repeated subaerial eruptions from the summit and rift zones have built a gently sloping, elongate shield volcano covering approximately 1,500 km2. Much of the volcano lies under water; the east rift zone extends 110 km from the summit to a depth of more than 5,000 m below sea level; whereas the southwest rift zone has a more limited submarine continuation. South of the summit caldera, mostly north-facing normal faults and open fractures of the Koa`e Fault System extend between the two rift zones. The Koa`e Fault System is interpreted as a tear-away structure that accommodates southward movement of Kilauea's flank in response to distension of the volcano perpendicular to the rift zones.

GIS Integration for Quantitatively Determining the Capabilities of Five Remote Sensors for Resource Exploration

NASA Technical Reports Server (NTRS)

Pascucci, R. F.; Smith, A.

1982-01-01

To assist the U.S. Geological Survey in carrying out a Congressional mandate to investigate the use of side-looking airborne radar (SLAR) for resources exploration, a research program was conducted to define the contribution of SLAR imagery to structural geologic mapping and to compare this with contributions from other remote sensing systems. Imagery from two SLAR systems and from three other remote sensing systems was interpreted, and the resulting information was digitized, quantified and intercompared using a computer-assisted geographic information system (GIS). The study area covers approximately 10,000 square miles within the Naval Petroleum Reserve, Alaska, and is situated between the foothills of the Brooks Range and the North Slope. The principal objectives were: (1) to establish quantitatively, the total information contribution of each of the five remote sensing systems to the mapping of structural geology; (2) to determine the amount of information detected in common when the sensors are used in combination; and (3) to determine the amount of unique, incremental information detected by each sensor when used in combination with others. The remote sensor imagery that was investigated included real-aperture and synthetic-aperture radar imagery, standard and digitally enhanced LANDSAT MSS imagery, and aerial photos.

Polarization-Sensitive Hyperspectral Imaging in vivo: A Multimode Dermoscope for Skin Analysis

NASA Astrophysics Data System (ADS)

Vasefi, Fartash; MacKinnon, Nicholas; Saager, Rolf B.; Durkin, Anthony J.; Chave, Robert; Lindsley, Erik H.; Farkas, Daniel L.

2014-05-01

Attempts to understand the changes in the structure and physiology of human skin abnormalities by non-invasive optical imaging are aided by spectroscopic methods that quantify, at the molecular level, variations in tissue oxygenation and melanin distribution. However, current commercial and research systems to map hemoglobin and melanin do not correlate well with pathology for pigmented lesions or darker skin. We developed a multimode dermoscope that combines polarization and hyperspectral imaging with an efficient analytical model to map the distribution of specific skin bio-molecules. This corrects for the melanin-hemoglobin misestimation common to other systems, without resorting to complex and computationally intensive tissue optical models. For this system's proof of concept, human skin measurements on melanocytic nevus, vitiligo, and venous occlusion conditions were performed in volunteers. The resulting molecular distribution maps matched physiological and anatomical expectations, confirming a technologic approach that can be applied to next generation dermoscopes and having biological plausibility that is likely to appeal to dermatologists.

Averaged kick maps: less noise, more signal…and probably less bias

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pražnikar, Jure; Afonine, Pavel V.; Gunčar, Gregor

2009-09-01

Averaged kick maps are the sum of a series of individual kick maps, where each map is calculated from atomic coordinates modified by random shifts. These maps offer the possibility of an improved and less model-biased map interpretation. Use of reliable density maps is crucial for rapid and successful crystal structure determination. Here, the averaged kick (AK) map approach is investigated, its application is generalized and it is compared with other map-calculation methods. AK maps are the sum of a series of kick maps, where each kick map is calculated from atomic coordinates modified by random shifts. As such, theymore » are a numerical analogue of maximum-likelihood maps. AK maps can be unweighted or maximum-likelihood (σ{sub A}) weighted. Analysis shows that they are comparable and correspond better to the final model than σ{sub A} and simulated-annealing maps. The AK maps were challenged by a difficult structure-validation case, in which they were able to clarify the problematic region in the density without the need for model rebuilding. The conclusion is that AK maps can be useful throughout the entire progress of crystal structure determination, offering the possibility of improved map interpretation.« less

Feasibility evaluation and study of adapting the attitude reference system to the Orbiter camera payload system's large format camera

NASA Technical Reports Server (NTRS)

1982-01-01

A design concept that will implement a mapping capability for the Orbital Camera Payload System (OCPS) when ground control points are not available is discussed. Through the use of stellar imagery collected by a pair of cameras whose optical axis are structurally related to the large format camera optical axis, such pointing information is made available.

Characterization of Geologic Structures and Host Rock Properties Relevant to the Hydrogeology of the Standard Mine in Elk Basin, Gunnison County, Colorado

USGS Publications Warehouse

Caine, Jonathan S.; Manning, Andrew H.; Berger, Byron R.; Kremer, Yannick; Guzman, Mario A.; Eberl, Dennis D.; Schuller, Kathryn

2010-01-01

The Standard Mine Superfund Site is a source of mine drainage and associated heavy metal contamination of surface and groundwaters. The site contains Tertiary polymetallic quartz veins and fault zones that host precious and base metal sulfide mineralization common in Colorado. To assist the U.S. Environmental Protection Agency in its effort to remediate mine-related contamination, we characterized geologic structures, host rocks, and their potential hydraulic properties to better understand the sources of contaminants and the local hydrogeology. Real time kinematic and handheld global positioning systems were used to locate and map precisely the geometry of the surface traces of structures and mine-related features, such as portals. New reconnaissance geologic mapping, field and x-ray diffraction mineralogy, rock sample collection, thin-section analysis, and elemental geochemical analysis were completed to characterize hydrothermal alteration, mineralization, and subsequent leaching of metallic phases. Surface and subsurface observations, fault vein and fracture network characterization, borehole geophysical logging, and mercury injection capillary entry pressure data were used to document potential controls on the hydrologic system.

3D indoor modeling using a hand-held embedded system with multiple laser range scanners

NASA Astrophysics Data System (ADS)

Hu, Shaoxing; Wang, Duhu; Xu, Shike

2016-10-01

Accurate three-dimensional perception is a key technology for many engineering applications, including mobile mapping, obstacle detection and virtual reality. In this article, we present a hand-held embedded system designed for constructing 3D representation of structured indoor environments. Different from traditional vehicle-borne mobile mapping methods, the system presented here is capable of efficiently acquiring 3D data while an operator carrying the device traverses through the site. It consists of a simultaneous localization and mapping(SLAM) module, a 3D attitude estimate module and a point cloud processing module. The SLAM is based on a scan matching approach using a modern LIDAR system, and the 3D attitude estimate is generated by a navigation filter using inertial sensors. The hardware comprises three 2D time-flight laser range finders and an inertial measurement unit(IMU). All the sensors are rigidly mounted on a body frame. The algorithms are developed on the frame of robot operating system(ROS). The 3D model is constructed using the point cloud library(PCL). Multiple datasets have shown robust performance of the presented system in indoor scenarios.

Development of Mobile Mapping System for 3D Road Asset Inventory.

PubMed

Sairam, Nivedita; Nagarajan, Sudhagar; Ornitz, Scott

2016-03-12

Asset Management is an important component of an infrastructure project. A significant cost is involved in maintaining and updating the asset information. Data collection is the most time-consuming task in the development of an asset management system. In order to reduce the time and cost involved in data collection, this paper proposes a low cost Mobile Mapping System using an equipped laser scanner and cameras. First, the feasibility of low cost sensors for 3D asset inventory is discussed by deriving appropriate sensor models. Then, through calibration procedures, respective alignments of the laser scanner, cameras, Inertial Measurement Unit and GPS (Global Positioning System) antenna are determined. The efficiency of this Mobile Mapping System is experimented by mounting it on a truck and golf cart. By using derived sensor models, geo-referenced images and 3D point clouds are derived. After validating the quality of the derived data, the paper provides a framework to extract road assets both automatically and manually using techniques implementing RANSAC plane fitting and edge extraction algorithms. Then the scope of such extraction techniques along with a sample GIS (Geographic Information System) database structure for unified 3D asset inventory are discussed.

Development of Mobile Mapping System for 3D Road Asset Inventory

PubMed Central

Sairam, Nivedita; Nagarajan, Sudhagar; Ornitz, Scott

2016-01-01

Asset Management is an important component of an infrastructure project. A significant cost is involved in maintaining and updating the asset information. Data collection is the most time-consuming task in the development of an asset management system. In order to reduce the time and cost involved in data collection, this paper proposes a low cost Mobile Mapping System using an equipped laser scanner and cameras. First, the feasibility of low cost sensors for 3D asset inventory is discussed by deriving appropriate sensor models. Then, through calibration procedures, respective alignments of the laser scanner, cameras, Inertial Measurement Unit and GPS (Global Positioning System) antenna are determined. The efficiency of this Mobile Mapping System is experimented by mounting it on a truck and golf cart. By using derived sensor models, geo-referenced images and 3D point clouds are derived. After validating the quality of the derived data, the paper provides a framework to extract road assets both automatically and manually using techniques implementing RANSAC plane fitting and edge extraction algorithms. Then the scope of such extraction techniques along with a sample GIS (Geographic Information System) database structure for unified 3D asset inventory are discussed. PMID:26985897

Analysis of the time structure of synchronization in multidimensional chaotic systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Makarenko, A. V., E-mail: avm.science@mail.ru

2015-05-15

A new approach is proposed to the integrated analysis of the time structure of synchronization of multidimensional chaotic systems. The method allows one to diagnose and quantitatively evaluate the intermittency characteristics during synchronization of chaotic oscillations in the T-synchronization mode. A system of two identical logistic mappings with unidirectional coupling that operate in the developed chaos regime is analyzed. It is shown that the widely used approach, in which only synchronization patterns are subjected to analysis while desynchronization areas are considered as a background signal and removed from analysis, should be regarded as methodologically incomplete.

Knowledge acquisition from natural language for expert systems based on classification problem-solving methods

NASA Technical Reports Server (NTRS)

Gomez, Fernando

1989-01-01

It is shown how certain kinds of domain independent expert systems based on classification problem-solving methods can be constructed directly from natural language descriptions by a human expert. The expert knowledge is not translated into production rules. Rather, it is mapped into conceptual structures which are integrated into long-term memory (LTM). The resulting system is one in which problem-solving, retrieval and memory organization are integrated processes. In other words, the same algorithm and knowledge representation structures are shared by these processes. As a result of this, the system can answer questions, solve problems or reorganize LTM.

A database paradigm for the management of DICOM-RT structure sets using a geographic information system

NASA Astrophysics Data System (ADS)

Shao, Weber; Kupelian, Patrick A.; Wang, Jason; Low, Daniel A.; Ruan, Dan

2014-03-01

We devise a paradigm for representing the DICOM-RT structure sets in a database management system, in such way that secondary calculations of geometric information can be performed quickly from the existing contour definitions. The implementation of this paradigm is achieved using the PostgreSQL database system and the PostGIS extension, a geographic information system commonly used for encoding geographical map data. The proposed paradigm eliminates the overhead of retrieving large data records from the database, as well as the need to implement various numerical and data parsing routines, when additional information related to the geometry of the anatomy is desired.

Hydroacoustic mapping to define sedimentation rates and characterize lentic habitats in DeSoto Lake, DeSoto National Wildlife Refuge

USGS Publications Warehouse

Elliott, Caroline M.; Jacobson, Robert B.; Chojnacki, Kimberly A.

2006-01-01

Hydroacoustic tools were used to map depth, elevation, and substrate on DeSoto Lake in March 2006. DeSoto Lake, located on the DeSoto National Wildlife Refuge in Iowa and Nebraska, is one of the largest oxbow lakes of the Missouri River system. It is used by over 500,000 migratory birds each fall and spring and is also an important aquatic resource for anglers. Management concerns at the lake include the effects of erosion and sedimentation, aquatic vegetation establishment, shorebird habitat availability at different lake levels, and fish habitat structure. DeSoto Lake was cut off from the Missouri River in 1960, and the current mapping updates previous lower-resolution bathymetric maps created from lake surveys in 1967 and 1979. The new maps provide managers tools to assess aquatic habitats and provide a baseline for future monitoring of lake sedimentation and erosion.

Geohydrologic units of the Gulf Coastal Plain in Arkansas

USGS Publications Warehouse

Petersen, J.C.; Broom, M.E.; Bush, W.V.

1985-01-01

This report describes geohydrologic units of the Jurassic, Cretaceous, Tertiary and Quaternary Systems and of the Paleozoic Era in the Gulf Coastal Plain in Arkansas. Structure contour maps on top of the Paleozoic rocks, Trinity Group, Tokio Formation, Nacatoch Sand, Midway Group, Wilcox Group, Carrizo Sand, Cane River Formation. Sparta Sand, and the Memphis Sand are included. Thickness maps of the Wilcox Group, Carrizo Sand, Cane River Formation, Sparta Sand, and the Memphis Sand and maps showing lines of equal dissolved-solids concentrations of the Nacatoch Sand, Wilcox Group, Carrizo Sand, Cane River Formation, and Sparta Sand are also included. The dissolved-solids maps are at about a 1:2 million scale. All other maps are at a 1:1 million scale. Brief descriptions of the geohydrologic units mentioned above and of the Cook Mountain and Cockfield Formations and the Jackson Group are also included. (USGS)

The Updating of Geospatial Base Data

NASA Astrophysics Data System (ADS)

Alrajhi, Muhamad N.; Konecny, Gottfried

2018-04-01

Topopographic mapping issues concern the area coverage at different scales and their age. The age of the map is determined by the system of updating. The United Nations (UNGGIM) have attempted to track the global map coverage at various scale ranges, which has greatly improved in recent decades. However the poor state of updating of base maps is still a global problem. In Saudi Arabia large scale mapping is carried out for all urban, suburban and rural areas by aerial surveys. Updating is carried out by remapping every 5 to 10 years. Due to the rapid urban development this is not satisfactory, but faster update methods are forseen by use of high resolution satellite imagery and the improvement of object oriented geodatabase structures, which will permit to utilize various survey technologies to update the photogrammetry established geodatabases. The longterm goal is to create an geodata infrastructure, which exists in Great Britain or Germany.

Mapping Sub-pc Structure in AGNs with Water Vapor Megamasers

NASA Astrophysics Data System (ADS)

Braatz, James; Reid, Mark; Condon, James; Lo, K. Y.; Henkel, Christian; Kuo, Cheng-Yu; Impellizzeri, Violette; Gao, Feng; Zhao, Wei; Greene, Jenny; Constantin, Anca

2012-12-01

VLBI observations of water vapor megamasers provide the only direct means of mapping gas in AGNs on sub-parsec scales. Altogether, megamasers have been detected in about 150 galaxies, most of them nearby (z < 0.05), type 2 AGNs. Twenty one of these systems have now been mapped with VLBI. In about 25% of all maser-detected galaxies, the single-dish spectrum of the emission reveals a triple-peaked profile characteristic of masers in a thin, circumnuclear, edge-on accretion disk, and VLBI observations of these megamasers confirm the disk geometry. The maps reveal the size, shape (i.e. warp), and orientation of the disks, they provide gold-standard black hole masses and, in several cases, they enable the measurement of geometric distances to the host galaxies. In a few megamasers with more ambiguous single-dish profiles, VLBI maps show that some of the emission originates not in a disk, but rather from clouds that appear to be associated with an outflow. In these megamasers, and possibly many of the systems not yet mapped with VLBI, the masers may be directly associated with optically opaque, dusty gas believed to obscure some AGNs. Here we summarize results from VLBI imaging of megamasers and discuss the prospects for using observations of masers to understand the nature of obscuring gas in AGNs.

US GeoData

USGS Publications Warehouse

,

1992-01-01

US GeoData tapes are computer tapes which contain cartographic data in digital form. The 1:2,000,000-scale data are available in two forms. The graphic form can be used to generate computer-plotted maps. The content and scale of the maps can be varied to meet your needs. The topologically-structured form of US GeoData is suitable for input to geographic information systems for use in spatial analysis and geographic studies. Both forms must be used in conjunction with appropriate software. US GeoData tapes offer convenience, accuracy, flexibility, and cost effectiveness to many map users. Business, industry, and government users who are involved in network planning and analysis, transportation, demography, land use, or any activity where data can be related to, or plotted on a map will find US GeoData a valuable resource.

Integrating Evolutionary Game Theory into Mechanistic Genotype-Phenotype Mapping.

PubMed

Zhu, Xuli; Jiang, Libo; Ye, Meixia; Sun, Lidan; Gragnoli, Claudia; Wu, Rongling

2016-05-01

Natural selection has shaped the evolution of organisms toward optimizing their structural and functional design. However, how this universal principle can enhance genotype-phenotype mapping of quantitative traits has remained unexplored. Here we show that the integration of this principle and functional mapping through evolutionary game theory gains new insight into the genetic architecture of complex traits. By viewing phenotype formation as an evolutionary system, we formulate mathematical equations to model the ecological mechanisms that drive the interaction and coordination of its constituent components toward population dynamics and stability. Functional mapping provides a procedure for estimating the genetic parameters that specify the dynamic relationship of competition and cooperation and predicting how genes mediate the evolution of this relationship during trait formation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Epitope mapping of the U1 small nuclear ribonucleoprotein particle in patients with systemic lupus erythematosus and mixed connective tissue disease.

PubMed

Somarelli, J A; Mesa, A; Rodriguez, R; Avellan, R; Martinez, L; Zang, Y J; Greidinger, E L; Herrera, R J

2011-03-01

Systemic lupus erythematosus (SLE) and mixed connective tissue disease (MCTD) are autoimmune illnesses characterized by the presence of high titers of autoantibodies directed against a wide range of 'self ' antigens. Proteins of the U1 small nuclear ribonucleoprotein particle (U1 snRNP) are among the most immunogenic molecules in patients with SLE and MCTD. The recent release of a crystallized U1 snRNP provides a unique opportunity to evaluate the effects of tertiary and quaternary structures on autoantigenicity within the U1 snRNP. In the present study, an epitope map was created using the U1 snRNP crystal structure. A total of 15 peptides were tested in a cohort of 68 patients with SLE, 29 with MCTD and 26 healthy individuals and mapped onto the U1 snRNP structure. Antigenic sites were detected in a variety of structures and appear to include RNA binding domains, but mostly exclude regions necessary for protein-protein interactions. These data suggest that while some autoantibodies may target U1 snRNP proteins as monomers or apoptosis-induced, protease-digested fragments, others may recognize epitopes on assembled protein subcomplexes of the U1 snRNP. Although nearly all of the peptides are strong predictors of autoimmune illness, none were successful at distinguishing between SLE and MCTD. The antigenicity of some peptides significantly correlated with several clinical symptoms. This investigation implicitly highlights the complexities of autoimmune epitopes, and autoimmune illnesses in general, and demonstrates the variability of antigens in patient populations, all of which contribute to difficult clinical diagnoses.

Feedback-Equivalence of Nonlinear Systems with Applications to Power System Equations.

NASA Astrophysics Data System (ADS)

Marino, Riccardo

The key concept of the dissertation is feedback equivalence among systems affine in control. Feedback equivalence to linear systems in Brunovsky canonical form and the construction of the corresponding feedback transformation are used to: (i) design a nonlinear regulator for a detailed nonlinear model of a synchronous generator connected to an infinite bus; (ii) establish which power system network structures enjoy the feedback linearizability property and design a stabilizing control law for these networks with a constraint on the control space which comes from the use of d.c. lines. It is also shown that the feedback linearizability property allows the use of state feedback to contruct a linear controllable system with a positive definite linear Hamiltonian structure for the uncontrolled part if the state space is even; a stabilizing control law is derived for such systems. Feedback linearizability property is characterized by the involutivity of certain nested distributions for strongly accessible analytic systems; if the system is defined on a manifold M diffeomorphic to the Euclidean space, it is established that the set where the property holds is a submanifold open and dense in M. If an analytic output map is defined, a set of nested involutive distributions can be always defined and that allows the introduction of an observability property which is the dual concept, in some sense, to feedback linearizability: the goal is to investigate when a nonlinear system affine in control with an analytic output map is feedback equivalent to a linear controllable and observable system. Finally a nested involutive structure of distributions is shown to guarantee the existence of a state feedback that takes a nonlinear system affine in control to a single input one, both feedback equivalent to linear controllable systems, preserving one controlled vector field.

Fuzzy associative memories

NASA Technical Reports Server (NTRS)

Kosko, Bart

1991-01-01

Mappings between fuzzy cubes are discussed. This level of abstraction provides a surprising and fruitful alternative to the propositional and predicate-calculas reasoning techniques used in expert systems. It allows one to reason with sets instead of propositions. Discussed here are fuzzy and neural function estimators, neural vs. fuzzy representation of structured knowledge, fuzzy vector-matrix multiplication, and fuzzy associative memory (FAM) system architecture.

MAPPING TOXICANT-INDUCED NERVOUS SYSTEM DAMAGE WITH A CUPRIC SILVER STAIN: A QUANTITATIVE ANALYSIS OF NEURAL DEGENERATION INDUCED BY 3,4-METHYLENEDIOXYMETHAMPETHAMINE (MDMA)

EPA Science Inventory

The purpose of structural assessments in neurotoxicology is to provide a convincing picture of the location and extent of damage to the nervous system. ilver stains that selectively reveal neural degeneration hold particular promise in this regard. n this chapter we describe resu...

A financial market model with two discontinuities: Bifurcation structures in the chaotic domain

NASA Astrophysics Data System (ADS)

Panchuk, Anastasiia; Sushko, Iryna; Westerhoff, Frank

2018-05-01

We continue the investigation of a one-dimensional piecewise linear map with two discontinuity points. Such a map may arise from a simple asset-pricing model with heterogeneous speculators, which can help us to explain the intricate bull and bear behavior of financial markets. Our focus is on bifurcation structures observed in the chaotic domain of the map's parameter space, which is associated with robust multiband chaotic attractors. Such structures, related to the map with two discontinuities, have been not studied before. We show that besides the standard bandcount adding and bandcount incrementing bifurcation structures, associated with two partitions, there exist peculiar bandcount adding and bandcount incrementing structures involving all three partitions. Moreover, the map's three partitions may generate intriguing bistability phenomena.

Electricity Consumption Risk Map - The use of Urban Climate Mapping for smarter analysis: Case study for Birmingham, UK.

NASA Astrophysics Data System (ADS)

Antunes Azevedo, Juliana; Burghardt, René; Chapman, Lee; Katzchner, Lutz; Muller, Catherine L.

2015-04-01

Climate is a key driving factor in energy consumption. However, income, vegetation, building mass structure, topography also impact on the amount of energy consumption. In a changing climate, increased temperatures are likely to lead to increased electricity consumption, affecting demand, distribution and generation. Furthermore, as the world population becomes more urbanized, increasing numbers of people will need to deal with not only increased temperatures from climate change, but also from the unintentional modification of the urban climate in the form of urban heat islands. Hence, climate and climate change needs to be taken into account for future urban planning aspects to increase the climate and energy resilience of the community and decrease the future social and economic costs. Geographical Information Systems provide a means to create urban climate maps as part of the urban planning process. Geostatistical analyses linking these maps with demographic and social data, enables a geo-statistical analysis to identify linkages to high-risk groups of the community and vulnerable areas of town and cities. Presently, the climatope classification is oriented towards thermal aspects and the ventilation quality (roughness) of the urban areas but can also be adapted to take into account other structural "environmental factors". This study aims to use the climatope approach to predict areas of potential high electricity consumption in Birmingham, UK. Several datasets were used to produce an average surface temperature map, vegetation map, land use map, topography map, building height map, built-up area roughness calculations, an average air temperature map and a domestic electricity consumption map. From the correlations obtained between the layers it is possible to average the importance of each factor and create a map for domestic electricity consumption to understand the influence of environmental aspects on spatial energy consumption. Based on these results city planners and local authorities can guide their directives and policies towards electricity consumption, demand, generation and distribution.

Geologic map of the Oasis Valley basin and vicinity, Nye County, Nevada

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fridrich, C.J.; Minor, S.A.; Ryder, P.L.

2000-01-13

This map and accompanying cross sections present an updated synthesis of the geologic framework of the Oasis Valley area, a major groundwater discharge site located about 15 km west of the Nevada Test Site. Most of the data presented in this compilation is new geologic map data, as discussed below. In addition, the cross sections incorporate new geophysical data that have become available in the last three years (Grauch and others, 1997; written comm., 1999; Hildenbrand and others, 1999; Mankinen and others, 1999). Geophysical data are used to estimate the thickness of the Tertiary volcanic and sedimentary rocks on themore » cross sections, and to identify major concealed structures. Large contiguous parts of the map area are covered either by alluvium or by volcanic units deposited after development of the major structures present at the depth of the water table and below. Hence, geophysical data provide critical constraints on our geologic interpretations. A companion paper by Fridrich and others (1999) and the above-cited reports by Hildenbrand and others (1999) and Mankinen and others (1999) provide explanations of the interpretations that are presented graphically on this map. This map covers nine 7.5-minute quadrangles in Nye County, Nevada, centered on the Thirsty Canyon SW quadrangle, and is a compilation of one published quadrangle map (O'Connor and others, 1966) and eight new quadrangle maps, two of which have been previously released (Minor and others, 1997; 1998). The cross sections that accompany this map were drawn to a depth of about 5 km below land surface at the request of hydrologists who are modeling the Death Valley groundwater system.« less

Mapping Subsea Permafrost Using Suface-Towed Electromagnetic Methods Near Prudhoe Bay, AK

NASA Astrophysics Data System (ADS)

Sherman, D.; Constable, S.

2017-12-01

We have developed a surface-towed electric dipole-dipole system capable of operating in shallow water and deployable from small boats. Our system uses electromagnetic energy from a modulated manmade source to interrogate the underlying resistivity structure of the seafloor. We used this system in the summers of 2014 and 2015 to map subsea ice-bonded permafrost on the Beaufort Shelf along 200 km of coastline, from Tigvariak Island to Harrison Bay. Permafrost is resistive and was found to be anisotropic, likely due to interbedded layers of frozen and unfrozen sediment. Maps of depth to permafrost and its thickness were produced and results compared to borehole logs in the area. We observed elevated resistivity values offshore the Sagavanirktok River outflow, supporting the idea that fresh groundwater flow has a preserving effect on submerged permafrost. This system provides a cost effective method that could be used to further quantify permafrost extent, provide a baseline for measurements of future degradation, answer questions about the relationship between coastal erosion rates and offshore permafrost, and provide observational constraints on pore water salinity to aid in permafrost modeling studies.

Method for removing atomic-model bias in macromolecular crystallography

DOEpatents

Terwilliger, Thomas C [Santa Fe, NM

2006-08-01

Structure factor bias in an electron density map for an unknown crystallographic structure is minimized by using information in a first electron density map to elicit expected structure factor information. Observed structure factor amplitudes are combined with a starting set of crystallographic phases to form a first set of structure factors. A first electron density map is then derived and features of the first electron density map are identified to obtain expected distributions of electron density. Crystallographic phase probability distributions are established for possible crystallographic phases of reflection k, and the process is repeated as k is indexed through all of the plurality of reflections. An updated electron density map is derived from the crystallographic phase probability distributions for each one of the reflections. The entire process is then iterated to obtain a final set of crystallographic phases with minimum bias from known electron density maps.

Semi-automated extraction of landslides in Taiwan based on SPOT imagery and DEMs

NASA Astrophysics Data System (ADS)

Eisank, Clemens; Hölbling, Daniel; Friedl, Barbara; Chen, Yi-Chin; Chang, Kang-Tsung

2014-05-01

The vast availability and improved quality of optical satellite data and digital elevation models (DEMs), as well as the need for complete and up-to-date landslide inventories at various spatial scales have fostered the development of semi-automated landslide recognition systems. Among the tested approaches for designing such systems, object-based image analysis (OBIA) stepped out to be a highly promising methodology. OBIA offers a flexible, spatially enabled framework for effective landslide mapping. Most object-based landslide mapping systems, however, have been tailored to specific, mainly small-scale study areas or even to single landslides only. Even though reported mapping accuracies tend to be higher than for pixel-based approaches, accuracy values are still relatively low and depend on the particular study. There is still room to improve the applicability and objectivity of object-based landslide mapping systems. The presented study aims at developing a knowledge-based landslide mapping system implemented in an OBIA environment, i.e. Trimble eCognition. In comparison to previous knowledge-based approaches, the classification of segmentation-derived multi-scale image objects relies on digital landslide signatures. These signatures hold the common operational knowledge on digital landslide mapping, as reported by 25 Taiwanese landslide experts during personal semi-structured interviews. Specifically, the signatures include information on commonly used data layers, spectral and spatial features, and feature thresholds. The signatures guide the selection and implementation of mapping rules that were finally encoded in Cognition Network Language (CNL). Multi-scale image segmentation is optimized by using the improved Estimation of Scale Parameter (ESP) tool. The approach described above is developed and tested for mapping landslides in a sub-region of the Baichi catchment in Northern Taiwan based on SPOT imagery and a high-resolution DEM. An object-based accuracy assessment is conducted by quantitatively comparing extracted landslide objects with landslide polygons that were visually interpreted by local experts. The applicability and transferability of the mapping system are evaluated by comparing initial accuracies with those achieved for the following two tests: first, usage of a SPOT image from the same year, but for a different area within the Baichi catchment; second, usage of SPOT images from multiple years for the same region. The integration of the common knowledge via digital landslide signatures is new in object-based landslide studies. In combination with strategies to optimize image segmentation this may lead to a more objective, transferable and stable knowledge-based system for the mapping of landslides from optical satellite data and DEMs.

Map showing geology, oil and gas fields, and geologic provinces of the Gulf of Mexico region

USGS Publications Warehouse

French, Christopher D.; Schenk, Christopher J.

2006-01-01

This map was created as part of a worldwide series of geologic maps for the U.S. Geological Survey's World Energy Project. These products are available on CD-ROM and the Internet. The goal of the project is to assess the undiscovered, technically recoverable oil and gas resources of the world. Two previously published digital geologic data sets (U.S. and Caribbean) were clipped to the map extent, while the dataset for Mexico was digitized for this project. Original attributes for all data layers were maintained, and in some cases, graphically merged with common symbology for presentation purposes. The world has been divided into geologic provinces that are used for allocation and prioritization of oil and gas assessments. For the World Energy Project, a subset of those provinces is shown on this map. Each province has a set of geologic characteristics that distinguish it from surrounding provinces. These characteristics may include dominant lithologies, the age of the strata, and/or structural type. The World Geographic Coordinate System of 1984 is used for data storage, and the data are presented in a Lambert Conformal Conic Projection on the OFR 97-470-L map product. Other details about the map compilation and data sources are provided in metadata documents in the data section on this CD-ROM. Several software packages were used to create this map including: Environmental Systems Research Institute, Inc. (ESRI) ArcGIS 8.3, ArcInfo software, Adobe Photoshop CS, Illustrator CS, and Acrobat 6.0.

Middle Atmosphere Program. Handbook for MAP. Volume 13: Ground-based Techniques

NASA Technical Reports Server (NTRS)

Vincent, R. A. (Editor)

1984-01-01

Topics of activities in the middle Atmosphere program covered include: lidar systems of aerosol studies; mesosphere temperature; upper atmosphere temperatures and winds; D region electron densities; nitrogen oxides; atmospheric composition and structure; and optical sounding of ozone.

Hydrostructural maps of the Death Valley regional flow system, Nevada and California

USGS Publications Warehouse

Potter, C.J.; Sweetkind, D.S.; Dickerson, R.P.; Killgore, M.L.

2002-01-01

The locations of principal faults and structural zones that may influence ground-water flow were compiled in support of a three-dimensional ground-water model for the Death Valley regional flow system (DVRFS), which covers 80,000 square km in southwestern Nevada and southeastern California. Faults include Neogene extensional and strike-slip faults and pre-Tertiary thrust faults. Emphasis was given to characteristics of faults and deformed zones that may have a high potential for influencing hydraulic conductivity. These include: (1) faulting that results in the juxtaposition of stratigraphic units with contrasting hydrologic properties, which may cause ground-water discharge and other perturbations in the flow system; (2) special physical characteristics of the fault zones, such as brecciation and fracturing, that may cause specific parts of the zone to act either as conduits or as barriers to fluid flow; (3) the presence of a variety of lithologies whose physical and deformational characteristics may serve to impede or enhance flow in fault zones; (4) orientation of a fault with respect to the present-day stress field, possibly influencing hydraulic conductivity along the fault zone; and (5) faults that have been active in late Pleistocene or Holocene time and areas of contemporary seismicity, which may be associated with enhanced permeabilities. The faults shown on maps A and B are largely from Workman and others (in press), and fit one or more of the following criteria: (1) faults that are more than 10 km in map length; (2) faults with more than 500 m of displacement; and (3) faults in sets that define a significant structural fabric that characterizes a particular domain of the DVRFS. The following fault types are shown: Neogene normal, Neogene strike-slip, Neogene low-angle normal, pre-Tertiary thrust, and structural boundaries of Miocene calderas. We have highlighted faults that have late Pleistocene to Holocene displacement (Piety, 1996). Areas of thick Neogene basin-fill deposits (thicknesses 1-2 km, 2-3 km, and >3 km) are shown on map A, based on gravity anomalies and depth-to-basement modeling by Blakely and others (1999). We have interpreted the positions of faults in the subsurface, generally following the interpretations of Blakely and others (1999). Where geophysical constraints are not present, the faults beneath late Tertiary and Quaternary cover have been extended based on geologic reasoning. Nearly all of these concealed faults are shown with continuous solid lines on maps A and B, in order to provide continuous structures for incorporation into the hydrogeologic framework model (HFM). Map A also shows the potentiometric surface, regional springs (25-35 degrees Celsius, D'Agnese and others, 1997), and cold springs (Turner and others, 1996).

3D Geological Mapping - uncovering the subsurface to increase environmental understanding

NASA Astrophysics Data System (ADS)

Kessler, H.; Mathers, S.; Peach, D.

2012-12-01

Geological understanding is required for many disciplines studying natural processes from hydrology to landscape evolution. The subsurface structure of rocks and soils and their properties occupies three-dimensional (3D) space and geological processes operate in time. Traditionally geologists have captured their spatial and temporal knowledge in 2 dimensional maps and cross-sections and through narrative, because paper maps and later two dimensional geographical information systems (GIS) were the only tools available to them. Another major constraint on using more explicit and numerical systems to express geological knowledge is the fact that a geologist only ever observes and measures a fraction of the system they study. Only on rare occasions does the geologist have access to enough real data to generate meaningful predictions of the subsurface without the input of conceptual understanding developed from and knowledge of the geological processes responsible for the deposition, emplacement and diagenesis of the rocks. This in turn has led to geology becoming an increasingly marginalised science as other disciplines have embraced the digital world and have increasingly turned to implicit numerical modelling to understand environmental processes and interactions. Recent developments in geoscience methodology and technology have gone some way to overcoming these barriers and geologists across the world are beginning to routinely capture their knowledge and combine it with all available subsurface data (of often highly varying spatial distribution and quality) to create regional and national geological three dimensional geological maps. This is re-defining the way geologists interact with other science disciplines, as their concepts and knowledge are now expressed in an explicit form that can be used downstream to design process models structure. For example, groundwater modellers can refine their understanding of groundwater flow in three dimensions or even directly parameterize their numerical models using outputs from 3D mapping. In some cases model code is being re-designed in order to deal with the increasing geological complexity expressed by Geologists. These 3D maps contain have inherent uncertainty, just as their predecessors, 2D geological maps had, and there remains a significant body of work to quantify and effectively communicate this uncertainty. Here we present examples of regional and national 3D maps from Geological Survey Organisations worldwide and how these are being used to better solve real-life environmental problems. The future challenge for geologists is to make these 3D maps easily available in an accessible and interoperable form so that the environmental science community can truly integrate the hidden subsurface into a common understanding of the whole geosphere.

GIS Application Management for Disabled People

NASA Astrophysics Data System (ADS)

Tongkaw, Sasalak

2017-08-01

This research aimed to develop and design Geographical Information Systems (GIS) for facilitating disabled people by presenting some useful disabled information on the Google Map. The map could provide information about disabled types of people such as blind, deaf and physical movement. This research employed the Multiview 2 theory and method to plan and find out the problems in real world situation. This research used many designing data structure methods such as Data Flow Diagram, and ER-Diagram. The research focused into two parts: server site and client site which included the interface for Web-based application. The clear information of disable people on the map was useful for facilitating disabled people to find some useful information. In addition, it provided specialized data for company and government officers for managing and planning local facilities for disabled people in the cities. The disable could access the system through the Internet access at any time by using mobile or portable devices.

A symbolic/subsymbolic interface protocol for cognitive modeling

PubMed Central

Simen, Patrick; Polk, Thad

2009-01-01

Researchers studying complex cognition have grown increasingly interested in mapping symbolic cognitive architectures onto subsymbolic brain models. Such a mapping seems essential for understanding cognition under all but the most extreme viewpoints (namely, that cognition consists exclusively of digitally implemented rules; or instead, involves no rules whatsoever). Making this mapping reduces to specifying an interface between symbolic and subsymbolic descriptions of brain activity. To that end, we propose parameterization techniques for building cognitive models as programmable, structured, recurrent neural networks. Feedback strength in these models determines whether their components implement classically subsymbolic neural network functions (e.g., pattern recognition), or instead, logical rules and digital memory. These techniques support the implementation of limited production systems. Though inherently sequential and symbolic, these neural production systems can exploit principles of parallel, analog processing from decision-making models in psychology and neuroscience to explain the effects of brain damage on problem solving behavior. PMID:20711520

A Design of Irregular Grid Map for Large-Scale Wi-Fi LAN Fingerprint Positioning Systems

PubMed Central

Kim, Jae-Hoon; Min, Kyoung Sik; Yeo, Woon-Young

2014-01-01

The rapid growth of mobile communication and the proliferation of smartphones have drawn significant attention to location-based services (LBSs). One of the most important factors in the vitalization of LBSs is the accurate position estimation of a mobile device. The Wi-Fi positioning system (WPS) is a new positioning method that measures received signal strength indication (RSSI) data from all Wi-Fi access points (APs) and stores them in a large database as a form of radio fingerprint map. Because of the millions of APs in urban areas, radio fingerprints are seriously contaminated and confused. Moreover, the algorithmic advances for positioning face computational limitation. Therefore, we present a novel irregular grid structure and data analytics for efficient fingerprint map management. The usefulness of the proposed methodology is presented using the actual radio fingerprint measurements taken throughout Seoul, Korea. PMID:25302315

A design of irregular grid map for large-scale Wi-Fi LAN fingerprint positioning systems.

PubMed

Kim, Jae-Hoon; Min, Kyoung Sik; Yeo, Woon-Young

2014-01-01

The rapid growth of mobile communication and the proliferation of smartphones have drawn significant attention to location-based services (LBSs). One of the most important factors in the vitalization of LBSs is the accurate position estimation of a mobile device. The Wi-Fi positioning system (WPS) is a new positioning method that measures received signal strength indication (RSSI) data from all Wi-Fi access points (APs) and stores them in a large database as a form of radio fingerprint map. Because of the millions of APs in urban areas, radio fingerprints are seriously contaminated and confused. Moreover, the algorithmic advances for positioning face computational limitation. Therefore, we present a novel irregular grid structure and data analytics for efficient fingerprint map management. The usefulness of the proposed methodology is presented using the actual radio fingerprint measurements taken throughout Seoul, Korea.

Structure and shale gas production patterns from eastern Kentucky field

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shumaker, R.C.

Computer-derived subsurface structure, isopach, and gas-flow maps, based on 4000 drillers logs, have been generated for eastern Kentucky under a project sponsored by the Gas Research Institute. Structure maps show low-relief flextures related to basement structure. Some structures have been mapped at the surface, others have not. Highest final open-flow (fof) of shale gas from wells in Martin County follow a structural low between (basement) anticlines. From there, elevated gas flows (fof) extend westward along the Warfield monocline to Floyd County where the high flow (fof) trend extends southward along the Floyd County channel. In Knott County, the number ofmore » wells with high gas flow (fof) decreases abruptly. The center of highest gas flow (fof) in Floyd County spreads eastward to Pike County, forming a triangular shaped area of high production (fof). The center of highest gas flow (fof) is in an area where possible (basement) structure trends intersect and where low-relief surface folds (probably detached structure) were mapped and shown on the 1922 version of the Floyd County structure map. Modern regional maps, based on geophysical logs from widely spaced wells, do not define the low-relief structures that have been useful in predicting gas flow trends. Detailed maps based on drillers logs can be misleading unless carefully edited. Comparative analysis of high gas flows (fof) and 10-year cumulative production figures in a small area confirms that there is a relationship between gas flow (fof) values and long-term cumulative production.« less

Geology of the Cape Mendocino, Eureka, Garberville, and Southwestern Part of the Hayfork 30 x 60 Minute Quadrangles and Adjacent Offshore Area, Northern California

USGS Publications Warehouse

McLaughlin, Robert J.; Ellen, S.D.; Blake, M.C.; Jayko, Angela S.; Irwin, W.P.; Aalto, K.R.; Carver, G.A.; Clarke, S.H.; Barnes, J.B.; Cecil, J.D.; Cyr, K.A.

2000-01-01

Introduction These geologic maps and accompanying structure sections depict the geology and structure of much of northwestern California and the adjacent continental margin. The map area includes the Mendocino triple junction, which is the juncture of the North American continental plate with two plates of the Pacific ocean basin. The map area also encompasses major geographic and geologic provinces of northwestern California. The maps incorporate much previously unpublished geologic mapping done between 1980 and 1995, as well as published mapping done between about 1950 and 1978. To construct structure sections to mid-crustal depths, we integrate the surface geology with interpretations of crustal structure based on seismicity, gravity and aeromagnetic data, offshore structure, and seismic reflection and refraction data. In addition to describing major geologic and structural features of northwestern California, the geologic maps have the potential to address a number of societally relevant issues, including hazards from earthquakes, landslides, and floods and problems related to timber harvest, wildlife habitat, and changing land use. All of these topics will continue to be of interest in the region, as changing land uses and population density interact with natural conditions. In these interactions, it is critical that the policies and practices affecting man and the environment integrate an adequate understanding of the geology. This digital map database, compiled from previously published and unpublished data, and new mapping by the authors, represents the general distribution of bedrock and surficial deposits in the mapped area. Together with the accompanying text file (ceghmf.ps, ceghmf.pdf, ceghmf.txt), it provides current information on the geologic structure and stratigraphy of the area covered. The database delineates map units that are identified by general age and lithology following the stratigraphic nomenclature of the U.S. Geological Survey. The scale of the source maps limits the spatial resolution (scale) of the database to 1:100,000 or smaller.

Geologic map of Chickasaw National Recreation Area, Murray County, Oklahoma

USGS Publications Warehouse

Blome, Charles D.; Lidke, David J.; Wahl, Ronald R.; Golab, James A.

2013-01-01

This 1:24,000-scale geologic map is a compilation of previous geologic maps and new geologic mapping of areas in and around Chickasaw National Recreation Area. The geologic map includes revisions of numerous unit contacts and faults and a number of previously “undifferentiated” rock units were subdivided in some areas. Numerous circular-shaped hills in and around Chickasaw National Recreation Area are probably the result of karst-related collapse and may represent the erosional remnants of large, exhumed sinkholes. Geospatial registration of existing, smaller scale (1:72,000- and 1:100,000-scale) geologic maps of the area and construction of an accurate Geographic Information System (GIS) database preceded 2 years of fieldwork wherein previously mapped geology (unit contacts and faults) was verified and new geologic mapping was carried out. The geologic map of Chickasaw National Recreation Area and this pamphlet include information pertaining to how the geologic units and structural features in the map area relate to the formation of the northern Arbuckle Mountains and its Arbuckle-Simpson aquifer. The development of an accurate geospatial GIS database and the use of a handheld computer in the field greatly increased both the accuracy and efficiency in producing the 1:24,000-scale geologic map.

LMSD: LIPID MAPS structure database

PubMed Central

Sud, Manish; Fahy, Eoin; Cotter, Dawn; Brown, Alex; Dennis, Edward A.; Glass, Christopher K.; Merrill, Alfred H.; Murphy, Robert C.; Raetz, Christian R. H.; Russell, David W.; Subramaniam, Shankar

2007-01-01

The LIPID MAPS Structure Database (LMSD) is a relational database encompassing structures and annotations of biologically relevant lipids. Structures of lipids in the database come from four sources: (i) LIPID MAPS Consortium's core laboratories and partners; (ii) lipids identified by LIPID MAPS experiments; (iii) computationally generated structures for appropriate lipid classes; (iv) biologically relevant lipids manually curated from LIPID BANK, LIPIDAT and other public sources. All the lipid structures in LMSD are drawn in a consistent fashion. In addition to a classification-based retrieval of lipids, users can search LMSD using either text-based or structure-based search options. The text-based search implementation supports data retrieval by any combination of these data fields: LIPID MAPS ID, systematic or common name, mass, formula, category, main class, and subclass data fields. The structure-based search, in conjunction with optional data fields, provides the capability to perform a substructure search or exact match for the structure drawn by the user. Search results, in addition to structure and annotations, also include relevant links to external databases. The LMSD is publicly available at PMID:17098933

Using concept mapping to evaluate knowledge structure in problem-based learning.

PubMed

Hung, Chia-Hui; Lin, Chen-Yung

2015-11-27

Many educational programs incorporate problem-based learning (PBL) to promote students' learning; however, the knowledge structure developed in PBL remains unclear. The aim of this study was to use concept mapping to generate an understanding of the use of PBL in the development of knowledge structures. Using a quasi-experimental study design, we employed concept mapping to illustrate the effects of PBL by examining the patterns of concepts and differences in the knowledge structures of students taught with and without a PBL approach. Fifty-two occupational therapy undergraduates were involved in the study and were randomly divided into PBL and control groups. The PBL group was given two case scenarios for small group discussion, while the control group continued with ordinary teaching and learning. Students were asked to make concept maps after being taught about knowledge structure. A descriptive analysis of the morphology of concept maps was conducted in order to compare the integration of the students' knowledge structures, and statistical analyses were done to understand the differences between groups. Three categories of concept maps were identified as follows: isolated, departmental, and integrated. The students in the control group constructed more isolated maps, while the students in the PBL group tended toward integrated mapping. Concept Relationships, Hierarchy Levels, and Cross Linkages in the concept maps were significantly greater in the PBL group; however, examples of concept maps did not differ significantly between the two groups. The data indicated that PBL had a strong effect on the acquisition and integration of knowledge. The important properties of PBL, including situational learning, problem spaces, and small group interactions, can help students to acquire more concepts, achieve an integrated knowledge structure, and enhance clinical reasoning.

High resolution and high sensitivity methods for oligosaccharide mapping and characterization by normal phase high performance liquid chromatography following derivatization with highly fluorescent anthranilic acid.

PubMed

Anumula, K R; Dhume, S T

1998-07-01

Facile labeling of oligosaccharides (acidic and neutral) in a nonselective manner was achieved with highly fluorescent anthranilic acid (AA, 2-aminobenzoic acid) (more than twice the intensity of 2-aminobenzamide, AB) for specific detection at very high sensitivity. Quantitative labeling in acetate-borate buffered methanol (approximately pH 5.0) at 80 degreesC for 60 min resulted in negligible or no desialylation of the oligosaccharides. A high resolution high performance liquid chromatographic method was developed for quantitative oligosaccharide mapping on a polymeric-NH2bonded (Astec) column operating under normal phase and anion exchange (NP-HPAEC) conditions. For isolation of oligosaccharides from the map by simple evaporation, the chromatographic conditions developed use volatile acetic acid-triethylamine buffer (approximately pH 4.0) systems. The mapping and characterization technology was developed using well characterized standard glycoproteins. The fluorescent oligosaccharide maps were similar to the maps obtained by the high pH anion-exchange chromatography with pulsed amperometric detection (HPAEC-PAD), except that the fluorescent maps contained more defined peaks. In the map, the oligosaccharides separated into groups based on charge, size, linkage, and overall structure in a manner similar to HPAEC-PAD with contribution of -COOH function from the label, anthranilic acid. However, selectivity of the column for sialic acid linkages was different. A second dimension normal phase HPLC (NP-HPLC) method was developed on an amide column (TSK Gel amide-80) for separation of the AA labeled neutral complex type and isomeric structures of high mannose type oligosaccharides. The oligosaccharides labeled with AA are compatible with biochemical and biophysical techniques, and use of matrix assisted laser desorption mass spectrometry for rapid determination of oligosaccharide mass map of glycoproteins is demonstrated. High resolution of NP-HPAEC and NP-HPLC methods combined with mass spectrometry (MALDI-TOF) can provide an effective technology for analyzing a wide repertoire of oligosaccharide structures and for determining the action of both transferases and glycosidases.

Cytological maps of lampbrush chromosomes of European water frogs (Pelophylax esculentus complex) from the Eastern Ukraine

PubMed Central

2013-01-01

Background Hybridogenesis (hemiclonal inheritance) is a kind of clonal reproduction in which hybrids between parental species are reproduced by crossing with one of the parental species. European water frogs (Pelophylax esculentus complex) represent an appropriate model for studying interspecies hybridization, processes of hemiclonal inheritance and polyploidization. P. esculentus complex consists of two parental species, P. ridibundus (the lake frog) and P. lessonae (the pool frog), and their hybridogenetic hybrid – P. esculentus (the edible frog). Parental and hybrid frogs can reproduce syntopically and form hemiclonal population systems. For studying mechanisms underlying the maintenance of water frog population systems it is required to characterize the karyotypes transmitted in gametes of parental and different hybrid animals of both sexes. Results In order to obtain an instrument for characterization of oocyte karyotypes in hybrid female frogs, we constructed cytological maps of lampbrush chromosomes from oocytes of both parental species originating in Eastern Ukraine. We further identified certain molecular components of chromosomal marker structures and mapped coilin-rich spheres and granules, chromosome associated nucleoli and special loops accumulating splicing factors. We recorded the dissimilarities between P. ridibundus and P. lessonae lampbrush chromosomes in the length of orthologous chromosomes, number and location of marker structures and interstitial (TTAGGG)n-repeat sites as well as activity of nucleolus organizer. Satellite repeat RrS1 was mapped in centromere regions of lampbrush chromosomes of the both species. Additionally, we discovered transcripts of RrS1 repeat in oocytes of P. ridibundus and P. lessonae. Moreover, G-rich transcripts of telomere repeat were revealed in association with terminal regions of P. ridibundus and P. lessonae lampbrush chromosomes. Conclusions The constructed cytological maps of lampbrush chromosomes of P. ridibundus and P. lessonae provide basis to define the type of genome transmitted within individual oocytes of P. esculentus females with different ploidy and from various population systems. PMID:23590698

Computation of statistical secondary structure of nucleic acids.

PubMed Central

Yamamoto, K; Kitamura, Y; Yoshikura, H

1984-01-01

This paper presents a computer analysis of statistical secondary structure of nucleic acids. For a given single stranded nucleic acid, we generated "structure map" which included all the annealing structures in the sequence. The map was transformed into "energy map" by rough approximation; here, the energy level of every pairing structure consisting of more than 2 successive nucleic acid pairs was calculated. By using the "energy map", the probability of occurrence of each annealed structure was computed, i.e., the structure was computed statistically. The basis of computation was the 8-queen problem in the chess game. The validity of our computer programme was checked by computing tRNA structure which has been well established. Successful application of this programme to small nuclear RNAs of various origins is demonstrated. PMID:6198622

Many-to-one form-to-function mapping weakens parallel morphological evolution.

PubMed

Thompson, Cole J; Ahmed, Newaz I; Veen, Thor; Peichel, Catherine L; Hendry, Andrew P; Bolnick, Daniel I; Stuart, Yoel E

2017-11-01

Evolutionary ecologists aim to explain and predict evolutionary change under different selective regimes. Theory suggests that such evolutionary prediction should be more difficult for biomechanical systems in which different trait combinations generate the same functional output: "many-to-one mapping." Many-to-one mapping of phenotype to function enables multiple morphological solutions to meet the same adaptive challenges. Therefore, many-to-one mapping should undermine parallel morphological evolution, and hence evolutionary predictability, even when selection pressures are shared among populations. Studying 16 replicate pairs of lake- and stream-adapted threespine stickleback (Gasterosteus aculeatus), we quantified three parts of the teleost feeding apparatus and used biomechanical models to calculate their expected functional outputs. The three feeding structures differed in their form-to-function relationship from one-to-one (lower jaw lever ratio) to increasingly many-to-one (buccal suction index, opercular 4-bar linkage). We tested for (1) weaker linear correlations between phenotype and calculated function, and (2) less parallel evolution across lake-stream pairs, in the many-to-one systems relative to the one-to-one system. We confirm both predictions, thus supporting the theoretical expectation that increasing many-to-one mapping undermines parallel evolution. Therefore, sole consideration of morphological variation within and among populations might not serve as a proxy for functional variation when multiple adaptive trait combinations exist. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

NASA-ISRO synthetic aperture radar (NISAR) for temporal tracking of iceberg calving events in the Antarctica

NASA Astrophysics Data System (ADS)

Jawak, S. D.; Luis, A. J.

2017-12-01

Estimating mass loss of the Antarctic ice sheet caused by iceberg calving is a challenging job. Antarctica is surrounded by a variety of large, medium and small sized ice shelves, glacier tongues and coastal areas without offshore floating ice masses. It is possible to monitor surface structures on the continental ice and the ice shelves as well as calved icebergs using NASA-ISRO synthetic aperture radar (NISAR) satellite images in future. The NISAR, which is planned to be launched in 2020, can be used as an all-weather and all-season system to classify the coastline of Antarctica to map patterns of surface structures close to the calving front. Additionally, classifying patterns and density of surface structures distributed over the ice shelves and ice tongues can be a challenging research where NISAR can be of a great advantage. So this work explores use of NISAR to map surface structures visible on ice shelves which can provide advisories to field teams. The ice shelf fronts has been categorized into various classes based on surface structures relative to the calving front within a 30 km-wide seaward strip. The resulting map of the classified calving fronts around Antarctica and their description would provide a detailed representation of crevasse formation and dominant iceberg in the southern ocean which pose a threat to navigation of Antarctic bound ships.

Telomere Organization in the Ligninolytic Basidiomycete Pleurotus ostreatus▿ †

PubMed Central

Pérez, Gúmer; Pangilinan, Jasmyn; Pisabarro, Antonio G.; Ramírez, Lucía

2009-01-01

Telomeres are structural and functional chromosome regions that are essential for the cell cycle to proceed normally. They are, however, difficult to map genetically and to identify in genome-wide sequence programs because of their structure and repetitive nature. We studied the telomeric and subtelomeric organization in the basidiomycete Pleurotus ostreatus using a combination of molecular and bioinformatics tools that permitted us to determine 19 out of the 22 telomeres expected in this fungus. The telomeric repeating unit in P. ostreatus is TTAGGG, and the numbers of repetitions of this unit range between 25 and 150. The mapping of the telomere restriction fragments to linkage groups 6 and 7 revealed polymorphisms compatible with those observed by pulsed field gel electrophoresis separation of the corresponding chromosomes. The subtelomeric regions in Pleurotus contain genes similar to those described in other eukaryotic systems. The presence of a cluster of laccase genes in chromosome 6 and a bipartite structure containing a Het-related protein and an alcohol dehydrogenase are especially relevant; this bipartite structure is characteristic of the Pezizomycotina fungi Neurospora crassa and Aspergillus terreus. As far as we know, this is the first report describing the presence of such structures in basidiomycetes and the location of a laccase gene cluster in the subtelomeric region, where, among others, species-specific genes allowing the organism to adapt rapidly to the environment usually map. PMID:19114509

A general natural-language text processor for clinical radiology.

PubMed Central

Friedman, C; Alderson, P O; Austin, J H; Cimino, J J; Johnson, S B

1994-01-01

OBJECTIVE: Development of a general natural-language processor that identifies clinical information in narrative reports and maps that information into a structured representation containing clinical terms. DESIGN: The natural-language processor provides three phases of processing, all of which are driven by different knowledge sources. The first phase performs the parsing. It identifies the structure of the text through use of a grammar that defines semantic patterns and a target form. The second phase, regularization, standardizes the terms in the initial target structure via a compositional mapping of multi-word phrases. The third phase, encoding, maps the terms to a controlled vocabulary. Radiology is the test domain for the processor and the target structure is a formal model for representing clinical information in that domain. MEASUREMENTS: The impression sections of 230 radiology reports were encoded by the processor. Results of an automated query of the resultant database for the occurrences of four diseases were compared with the analysis of a panel of three physicians to determine recall and precision. RESULTS: Without training specific to the four diseases, recall and precision of the system (combined effect of the processor and query generator) were 70% and 87%. Training of the query component increased recall to 85% without changing precision. PMID:7719797

A numerical study of defect detection in a plaster dome ceiling using structural acoustics.

PubMed

Bucaro, J A; Romano, A J; Valdivia, N; Houston, B H; Dey, S

2009-07-01

A numerical study is carried out to evaluate the effectiveness of using measured surface displacements resulting from acoustic speaker excitation to detect and localize flaws in a domed, plaster ceiling. The response of the structure to an incident acoustic pressure is obtained at four frequencies between 100 and 400 Hz using a parallel h-p structural acoustic finite element-based code. Three ceiling conditions are modeled: the pristine ceiling considered rigidly attached to the domed-shape support, partial detachment of a segment of the plaster layer from the support, and an interior pocket of plaster deconsolidation modeled as a heavy fluid. Spatial maps of the normal displacement resulting from speaker excitation are interpreted with the help of predictions based on static analysis. It is found that acoustic speaker excitation can provide displacement levels readily detected by commercially available laser Doppler vibrometer systems. Further, it is concluded that for 1 in. thick plaster layers, detachment sizes as small as 4 cm are detectable by direct observation of the measured displacement maps. Finally, spatial structure differences are observed in the displacement maps beneath the two defect types, which may provide a wavenumber-based feature useful for distinguishing plaster detachment from other defects such as deconsolidation.

The Structure-Mapping Engine: Algorithm and Examples.

ERIC Educational Resources Information Center

Falkenhainer, Brian; And Others

This description of the Structure-Mapping Engine (SME), a flexible, cognitive simulation program for studying analogical processing which is based on Gentner's Structure-Mapping theory of analogy, points out that the SME provides a "tool kit" for constructing matching algorithms consistent with this theory. This report provides: (1) a…

Mapping forest structure, species gradients and growth in an urban area using lidar and hyperspectral imagery

NASA Astrophysics Data System (ADS)

Gu, Huan

Urban forests play an important role in the urban ecosystem by providing a range of ecosystem services. Characterization of forest structure, species variation and growth in urban forests is critical for understanding the status, function and process of urban ecosystems, and helping maximize the benefits of urban ecosystems through management. The development of methods and applications to quantify urban forests using remote sensing data has lagged the study of natural forests due to the heterogeneity and complexity of urban ecosystems. In this dissertation, I quantify and map forest structure, species gradients and forest growth in an urban area using discrete-return lidar, airborne imaging spectroscopy and thermal infrared data. Specific objectives are: (1) to demonstrate the utility of leaf-off lidar originally collected for topographic mapping to characterize and map forest structure and associated uncertainties, including aboveground biomass, basal area, diameter, height and crown size; (2) to map species gradients using forest structural variables estimated from lidar and foliar functional traits, vegetation indices derived from AVIRIS hyperspectral imagery in conjunction with field-measured species data; and (3) to identify factors related to relative growth rates in aboveground biomass in the urban forests, and assess forest growth patterns across areas with varying degree of human interactions. The findings from this dissertation are: (1) leaf-off lidar originally acquired for topographic mapping provides a robust, potentially low-cost approach to quantify spatial patterns of forest structure and carbon stock in urban areas; (2) foliar functional traits and vegetation indices from hyperspectral data capture gradients of species distributions in the heterogeneous urban landscape; (3) species gradients, stand structure, foliar functional traits and temperature are strongly related to forest growth in the urban forests; and (4) high uncertainties in our ability to map forest structure, species gradient and growth rate occur in residential neighborhoods and along forest edges. Maps generated from this dissertation provide estimates of broad-scale spatial variations in forest structure, species distributions and growth to the city forest managers. The associated maps of uncertainty help managers understand the limitations of the maps and identify locations where the maps are more reliable and where more data are needed.

The Effect of Concept Mapping on Student Understanding and Correlation with Student Learning Styles

NASA Astrophysics Data System (ADS)

Mosley, William G.

This study investigated the use of concept mapping as a pedagogical strategy to promote change in the learning styles of pre-nursing students. Students' individual learning styles revealed two subsets of students; those who demonstrated a learning style that favors abstract conceptualization and those who demonstrated a learning style that favors concrete experience. Students in the experimental groups performed concept mapping activities designed to facilitate an integrative understanding of interactions between various organ systems of the body while the control group received a traditional didactic instruction without performing concept mapping activities. Both qualitative and quantitative data were collected in order to measure differences in student achievement. Analysis of the quantitative data revealed no significant change in the learning styles of students in either the control or experimental groups. Learning style groups were analyzed qualitatively for recurring or emergent themes that students identified as facilitating their learning. An analysis of qualitative data revealed that most students in the pre-nursing program were able to identify concepts within the class based upon visual cues, and a majority of these students exhibited the learning style of abstract conceptualization. As the laboratory experience for the course involves an examination of the anatomical structures of the human body, a visual identification of these structures seemed to be the most logical method to measure students' ability to identify anatomical structures.

Evaluation of carrier collection probability in bifacial interdigitated-back-contact crystalline silicon solar cells by the internal quantum efficiency mapping method

NASA Astrophysics Data System (ADS)

Tachibana, Tomihisa; Tanahashi, Katsuto; Mochizuki, Toshimitsu; Shirasawa, Katsuhiko; Takato, Hidetaka

2018-04-01

Bifacial interdigitated-back-contact (IBC) silicon solar cells with a high bifaciality of 0.91 were fabricated. Screen printing and firing technology were used to reduce the production cost. For the first time, the relationship between the rear side structure and carrier collection probability was evaluated using internal quantum efficiency (IQE) mapping. The measurement results showed that the screen-printed electrode and back surface field (BSF) area led to low IQE. The low carrier collection probability by BSF area can be explained by electrical shading effects. Thus, it is clear that the IQE mapping system is useful to evaluate the IBC cell.

Mapping Mathematics in Classroom Discourse

ERIC Educational Resources Information Center

Herbel-Eisenmann, Beth A.; Otten, Samuel

2011-01-01

This article offers a particular analytic method from systemic functional linguistics, "thematic analysis," which reveals the mathematical meaning potentials construed in discourse. Addressing concerns that discourse analysis is too often content-free, thematic analysis provides a way to represent semantic structures of mathematical content,…

How to implement a new strategy without disrupting your organization.

PubMed

Kaplan, Robert S; Norton, David P

2006-03-01

Throughout most of modern busi ness history, corporations have attempted to unlock value by matching their structures to their strategies: Centralization by function. Decentralization by product category or geographic region. Matrix organizations that attempt both at once. Virtual organizations. Networked organizations. Velcro organizations. But none of these approaches has worked very well. Restructuring churn is expensive, and new structures often create new organizational problems that are as troublesome as the ones they try to solve. It takes time for employees to adapt to them, they create legacy systems that refuse to die, and a great deal of tacit knowledge gets lost in the process. Given the costs and difficulties involved in finding structural ways to unlock value, it's fair to raise the question: Is structural change the right tool for the job? The answer is usually no, Kaplan and Norton contend. It's far less disruptive to choose an organizational design that works without major conflicts and then design a customized strategic system to align that structure to the strategy. A management system based on the balanced scorecard framework is the best way to align strategy and structure, the authors suggest. Managers can use the tools of the framework to drive their unit's performance: strategy maps to define and communicate the company's value proposition and the scorecard to implement and monitor the strategy. In this article, the originators of the balanced scorecard describe how two hugely different organizations--DuPont and the Royal Canadian Mounted Police-used corporate scorecards and strategy maps organized around strategic themes to realize the enormous value that their portfolios of assets, people, and skills represented. As a result, they did not have to endure a painful series of changes that simply replaced one rigid structure with another.

Application of Research on the Metallogenic Background in the Assessment of Mineral Resources Potentiality

NASA Astrophysics Data System (ADS)

Jia, D.; Feng, Y.; Liu, J.; Yao, X.; Zhang, Z.; Ye, T.

2017-12-01

1. Working BackgroundCurrent Status of Geological Prospecting: Detecting boundaries and bottoms, making ore search nearby; Seeing the stars, not seeing the Moon; Deep prospecting, undesirable results. The reasons of these problems are the regional metallogenic backgroud unclear and the metallogenic backgroud of the exploration regions unknown. Accordingly, Development and Research Center, CGS organized a geological setting research, in detail investigate metallogenic geological features and acquire mineralization information. 2. Technical SchemeCore research content is prediction elements of Metallogenic Structure. Adopt unified technical requirements from top to bottom, and technical route from bottom to top; Divide elements of mineral forecast and characteristics of geological structure into five elements for research and expression; Make full use of geophysical, geochemical and remote sensing inferences for the interpretation of macro information. After eight years the great project was completed. 3. Main AchievementsInnovation of basic maps compilation content of geological background, reinforce of geological structure data base of potentiality valuation. Preparation of geotectonic facies maps in different scales and professions, providing brand-new geologic background for potentiality assessment, promoting Chinese geotectonic research to the new height. Preparation of 3,375 geological structure thematic base maps of detecting working area in 6 kinds of prediction methods, providing base working maps, rock assemblage, structure of the protolith of geologic body / mineralization / ore controlling for mineral prediction of 25 ores. Enrichment and development of geotectonic facies analysis method, establishment of metallogenic background research thoughts and approach system for assessment of national mineral resources potentiality for the first time. 4. Application EffectOrientation——More and better results with less effort. Positioning——Have a definite object in view. Heart calm down——Confidence.

[Application of biotope mapping model integrated with vegetation cover continuity attributes in urban biodiversity conservation].

PubMed

Gao, Tian; Qiu, Ling; Chen, Cun-gen

2010-09-01

Based on the biotope classification system with vegetation structure as the framework, a modified biotope mapping model integrated with vegetation cover continuity attributes was developed, and applied to the study of the greenbelts in Helsingborg in southern Sweden. An evaluation of the vegetation cover continuity in the greenbelts was carried out by the comparisons of the vascular plant species richness in long- and short-continuity forests, based on the identification of woodland continuity by using ancient woodland indicator species (AWIS). In the test greenbelts, long-continuity woodlands had more AWIS. Among the forests where the dominant trees were more than 30-year-old, the long-continuity ones had a higher biodiversity of vascular plants, compared with the short-continuity ones with the similar vegetation structure. The modified biotope mapping model integrated with the continuity features of vegetation cover could be an important tool in investigating urban biodiversity, and provide corresponding strategies for future urban biodiversity conservation.

Roche tomography of cataclysmic variables - VIII. The irradiated and spotted dwarf nova, SS Cygni

NASA Astrophysics Data System (ADS)

Hill, C. A.; Smith, Robert Connon; Hebb, L.; Szkody, P.

2017-12-01

We present the results of our spectroscopic study of the dwarf nova SS Cyg, using Roche tomography to map the stellar surface and derive the system parameters. Given that this technique takes into account the inhomogeneous brightness distribution on the surface of the secondary star, our derived parameters are (in principle) the most robust yet found for this system. Furthermore, our surface maps reveal that the secondary star is highly spotted, with strongly asymmetric irradiation on the inner hemisphere. Moreover, by constructing Doppler tomograms of several Balmer emission lines, we find strong asymmetric emission from the irradiated secondary star, and an asymmetric accretion disc that exhibits spiral structures.

The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science

PubMed Central

Klie, Sebastian; Nikoloski, Zoran

2012-01-01

Since the introduction of the Gene Ontology (GO), the analysis of high-throughput data has become tightly coupled with the use of ontologies to establish associations between knowledge and data in an automated fashion. Ontologies provide a systematic description of knowledge by a controlled vocabulary of defined structure in which ontological concepts are connected by pre-defined relationships. In plant science, MapMan and GO offer two alternatives for ontology-driven analyses. Unlike GO, initially developed to characterize microbial systems, MapMan was specifically designed to cover plant-specific pathways and processes. While the dependencies between concepts in MapMan are modeled as a tree, in GO these are captured in a directed acyclic graph. Therefore, the difference in ontologies may cause discrepancies in data reduction, visualization, and hypothesis generation. Here provide the first systematic comparative analysis of GO and MapMan for the case of the model plant species Arabidopsis thaliana (Arabidopsis) with respect to their structural properties and difference in distributions of information content. In addition, we investigate the effect of the two ontologies on the specificity and sensitivity of automated gene function prediction via the coupling of co-expression networks and the guilt-by-association principle. Automated gene function prediction is particularly needed for the model plant Arabidopsis in which only half of genes have been functionally annotated based on sequence similarity to known genes. The results highlight the need for structured representation of species-specific biological knowledge, and warrants caution in the design principles employed in future ontologies. PMID:22754563

Self-organizing linear output map (SOLO): An artificial neural network suitable for hydrologic modeling and analysis

NASA Astrophysics Data System (ADS)

Hsu, Kuo-Lin; Gupta, Hoshin V.; Gao, Xiaogang; Sorooshian, Soroosh; Imam, Bisher

2002-12-01

Artificial neural networks (ANNs) can be useful in the prediction of hydrologic variables, such as streamflow, particularly when the underlying processes have complex nonlinear interrelationships. However, conventional ANN structures suffer from network training issues that significantly limit their widespread application. This paper presents a multivariate ANN procedure entitled self-organizing linear output map (SOLO), whose structure has been designed for rapid, precise, and inexpensive estimation of network structure/parameters and system outputs. More important, SOLO provides features that facilitate insight into the underlying processes, thereby extending its usefulness beyond forecast applications as a tool for scientific investigations. These characteristics are demonstrated using a classic rainfall-runoff forecasting problem. Various aspects of model performance are evaluated in comparison with other commonly used modeling approaches, including multilayer feedforward ANNs, linear time series modeling, and conceptual rainfall-runoff modeling.

Maps and streams in the auditory cortex: nonhuman primates illuminate human speech processing

PubMed Central

Rauschecker, Josef P; Scott, Sophie K

2010-01-01

Speech and language are considered uniquely human abilities: animals have communication systems, but they do not match human linguistic skills in terms of recursive structure and combinatorial power. Yet, in evolution, spoken language must have emerged from neural mechanisms at least partially available in animals. In this paper, we will demonstrate how our understanding of speech perception, one important facet of language, has profited from findings and theory in nonhuman primate studies. Chief among these are physiological and anatomical studies showing that primate auditory cortex, across species, shows patterns of hierarchical structure, topographic mapping and streams of functional processing. We will identify roles for different cortical areas in the perceptual processing of speech and review functional imaging work in humans that bears on our understanding of how the brain decodes and monitors speech. A new model connects structures in the temporal, frontal and parietal lobes linking speech perception and production. PMID:19471271

Volcano-tectonic structures, gravity and helium in geothermal areas of Tuscany and Latium (Vulsini volcanic district), Italy

USGS Publications Warehouse

Di, Filippo M.; Lombardi, S.; Nappi, G.; Reimer, G.M.; Renzulli, A.; Toro, B.

1999-01-01

Since the early 1980s, geological and structural mapping, gravity, and helium soil-gas studies have been performed in the eastern sector of the Vulsini Volcanic District (Roman Magmatic Province) in an attempt to locate potential geothermal reservoirs. This area is characterised by an anomalous geothermal gradient of > 100??C/km, and by widespread hydrothermal mineralization, thermal springs, high gas fluxes, and fossil and current travertine deposits. The results of these surveys indicate the existence of a number of fault systems, with N-S and E-W structures that appear to be superimposed on older NW-SE and NE-SW features. Comparison of the results of the various studies also reveals differences in permeability and potential reservoir structures at depth.Since the early 1980s, geological and structural mapping, gravity, and helium soil-gas studies have been performed in the eastern sector of the Vulsini Volcanic District (Roman Magmatic Province) in an attempt to locate potential geothermal reservoirs. This area is characterised by an anomalous geothermal gradient of > 100??C/km, and by widespread hydrothermal mineralization, thermal springs, high gas fluxes, and fossil and current travertine deposits. The results of these surveys indicate the existence of a number of fault systems, with N-S and E-W structures that appear to be superimposed on older NW-SE and NE-SW features. Comparison of the results of the various studies also reveals differences in permeability and potential reservoir structures at depth.

The development of flood map in Malaysia

NASA Astrophysics Data System (ADS)

Zakaria, Siti Fairus; Zin, Rosli Mohamad; Mohamad, Ismail; Balubaid, Saeed; Mydin, Shaik Hussein; MDR, E. M. Roodienyanto

2017-11-01

In Malaysia, flash floods are common occurrences throughout the year in flood prone areas. In terms of flood extent, flash floods affect smaller areas but because of its tendency to occur in densely urbanized areas, the value of damaged property is high and disruption to traffic flow and businesses are substantial. However, in river floods especially the river floods of Kelantan and Pahang, the flood extent is widespread and can extend over 1,000 square kilometers. Although the value of property and density of affected population is lower, the damage inflicted by these floods can also be high because the area affected is large. In order to combat these floods, various flood mitigation measures have been carried out. Structural flood mitigation alone can only provide protection levels from 10 to 100 years Average Recurrence Intervals (ARI). One of the economically effective non-structural approaches in flood mitigation and flood management is using a geospatial technology which involves flood forecasting and warning services to the flood prone areas. This approach which involves the use of Geographical Information Flood Forecasting system also includes the generation of a series of flood maps. There are three types of flood maps namely Flood Hazard Map, Flood Risk Map and Flood Evacuation Map. Flood Hazard Map is used to determine areas susceptible to flooding when discharge from a stream exceeds the bank-full stage. Early warnings of incoming flood events will enable the flood victims to prepare themselves before flooding occurs. Properties and life's can be saved by keeping their movable properties above the flood levels and if necessary, an early evacuation from the area. With respect to flood fighting, an early warning with reference through a series of flood maps including flood hazard map, flood risk map and flood evacuation map of the approaching flood should be able to alert the organization in charge of the flood fighting actions and the authority to undertake the necessary decisions, and the general public to be aware of the impending danger. However this paper will only discuss on the generations of Flood Hazard Maps and the use of Flood Risk Map and Flood Evacuation Map by using geospatial data.

Satellites, tweets, forecasts: the future of flood disaster management?

NASA Astrophysics Data System (ADS)

Dottori, Francesco; Kalas, Milan; Lorini, Valerio; Wania, Annett; Pappenberger, Florian; Salamon, Peter; Ramos, Maria Helena; Cloke, Hannah; Castillo, Carlos

2017-04-01

Floods have devastating effects on lives and livelihoods around the world. Structural flood defence measures such as dikes and dams can help protect people. However, it is the emerging science and technologies for flood disaster management and preparedness, such as increasingly accurate flood forecasting systems, high-resolution satellite monitoring, rapid risk mapping, and the unique strength of social media information and crowdsourcing, that are most promising for reducing the impacts of flooding. Here, we describe an innovative framework which integrates in real-time two components of the Copernicus Emergency mapping services, namely the European Flood Awareness System and the satellite-based Rapid Mapping, with new procedures for rapid risk assessment and social media and news monitoring. The integrated framework enables improved flood impact forecast, thanks to the real-time integration of forecasting and monitoring components, and increases the timeliness and efficiency of satellite mapping, with the aim of capturing flood peaks and following the evolution of flooding processes. Thanks to the proposed framework, emergency responders will have access to a broad range of timely and accurate information for more effective and robust planning, decision-making, and resource allocation.

A multispectral study of an extratropical cyclone with Nimbus 3 medium resolution infrared radiometer data

NASA Technical Reports Server (NTRS)

Holub, R.; Shenk, W. E.

1973-01-01

Four registered channels (0.2 to 4, 6.5 to 7, 10 to 11, and 20 to 23 microns) of the Nimbus 3 Medium Resolution Infrared Radiometer (MRIR) were used to study 24-hr changes in the structure of an extratropical cyclone during a 6-day period in May 1969. Use of a stereographic-horizon map projection insured that the storm was mapped with a single perspective throughout the series and allowed the convenient preparation of 24-hr difference maps of the infrared radiation fields. Single-channel and multispectral analysis techniques were employed to establish the positions and vertical slopes of jetstreams, large cloud systems, and major features of middle and upper tropospheric circulation. Use of these techniques plus the difference maps and continuity of observation allowed the early detection of secondary cyclones developing within the circulation of the primary cyclone. An automated, multispectral cloud-type identification technique was developed, and comparisons that were made with conventional ship reports and with high-resolution visual data from the image dissector camera system showed good agreement.

A new method for mapping the three-dimensional atomic distribution within nanoparticles by atom probe tomography (APT).

PubMed

Kim, Se-Ho; Kang, Phil Woong; Park, O Ok; Seol, Jae-Bok; Ahn, Jae-Pyoung; Lee, Ji Yeong; Choi, Pyuck-Pa

2018-07-01

We present a new method of preparing needle-shaped specimens for atom probe tomography from freestanding Pd and C-supported Pt nanoparticles. The method consists of two steps, namely electrophoresis of nanoparticles on a flat Cu substrate followed by electrodeposition of a Ni film acting as an embedding matrix for the nanoparticles. Atom probe specimen preparation can be subsequently carried out by means of focused-ion-beam milling. Using this approach, we have been able to perform correlative atom probe tomography and transmission electron microscopy analyses on both nanoparticle systems. Reliable mass spectra and three-dimensional atom maps could be obtained for Pd nanoparticle specimens. In contrast, atom probe samples prepared from C-supported Pt nanoparticles showed uneven field evaporation and hence artifacts in the reconstructed atom maps. Our developed method is a viable means of mapping the three-dimensional atomic distribution within nanoparticles and is expected to contribute to an improved understanding of the structure-composition-property relationships of various nanoparticle systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Mapping optical path length and image enhancement using quantitative orientation-independent differential interference contrast microscopy

PubMed Central

Shribak, Michael; Larkin, Kieran G.; Biggs, David

2017-01-01

Abstract. We describe the principles of using orientation-independent differential interference contrast (OI-DIC) microscopy for mapping optical path length (OPL). Computation of the scalar two-dimensional OPL map is based on an experimentally received map of the OPL gradient vector field. Two methods of contrast enhancement for the OPL image, which reveal hardly visible structures and organelles, are presented. The results obtained can be used for reconstruction of a volume image. We have confirmed that a standard research grade light microscope equipped with the OI-DIC and 100×/1.3 NA objective lens, which was not specially selected for minimum wavefront and polarization aberrations, provides OPL noise level of ∼0.5  nm and lateral resolution if ∼300  nm at a wavelength of 546 nm. The new technology is the next step in the development of the DIC microscopy. It can replace standard DIC prisms on existing commercial microscope systems without modification. This will allow biological researchers that already have microscopy setups to expand the performance of their systems. PMID:28060991

Insights into Photosystem II from Isomorphous Difference Fourier Maps of Femtosecond X-ray Diffraction Data and Quantum Mechanics/Molecular Mechanics Structural Models.

PubMed

Wang, Jimin; Askerka, Mikhail; Brudvig, Gary W; Batista, Victor S

2017-02-10

Understanding structure-function relations in photosystem II (PSII) is important for the development of biomimetic photocatalytic systems. X-ray crystallography, computational modeling, and spectroscopy have played central roles in elucidating the structure and function of PSII. Recent breakthroughs in femtosecond X-ray crystallography offer the possibility of collecting diffraction data from the X-ray free electron laser (XFEL) before radiation damage of the sample, thereby overcoming the main challenge of conventional X-ray diffraction methods. However, the interpretation of XFEL data from PSII intermediates is challenging because of the issues regarding data-processing, uncertainty on the precise positions of light oxygen atoms next to heavy metal centers, and different kinetics of the S-state transition in microcrystals compared to solution. Here, we summarize recent advances and outstanding challenges in PSII structure-function determination with emphasis on the implementation of quantum mechanics/molecular mechanics techniques combined with isomorphous difference Fourier maps, direct methods, and high-resolution spectroscopy.

Mapping higher-order relations between brain structure and function with embedded vector representations of connectomes.

PubMed

Rosenthal, Gideon; Váša, František; Griffa, Alessandra; Hagmann, Patric; Amico, Enrico; Goñi, Joaquín; Avidan, Galia; Sporns, Olaf

2018-06-05

Connectomics generates comprehensive maps of brain networks, represented as nodes and their pairwise connections. The functional roles of nodes are defined by their direct and indirect connectivity with the rest of the network. However, the network context is not directly accessible at the level of individual nodes. Similar problems in language processing have been addressed with algorithms such as word2vec that create embeddings of words and their relations in a meaningful low-dimensional vector space. Here we apply this approach to create embedded vector representations of brain networks or connectome embeddings (CE). CE can characterize correspondence relations among brain regions, and can be used to infer links that are lacking from the original structural diffusion imaging, e.g., inter-hemispheric homotopic connections. Moreover, we construct predictive deep models of functional and structural connectivity, and simulate network-wide lesion effects using the face processing system as our application domain. We suggest that CE offers a novel approach to revealing relations between connectome structure and function.

Probing Protein Structure by Amino Acid-Specific Covalent Labeling and Mass Spectrometry

PubMed Central

Mendoza, Vanessa Leah; Vachet, Richard W.

2009-01-01

For many years, amino acid-specific covalent labeling has been a valuable tool to study protein structure and protein interactions, especially for systems that are difficult to study by other means. These covalent labeling methods typically map protein structure and interactions by measuring the differential reactivity of amino acid side chains. The reactivity of amino acids in proteins generally depends on the accessibility of the side chain to the reagent, the inherent reactivity of the label and the reactivity of the amino acid side chain. Peptide mass mapping with ESI- or MALDI-MS and peptide sequencing with tandem MS are typically employed to identify modification sites to provide site-specific structural information. In this review, we describe the reagents that are most commonly used in these residue-specific modification reactions, details about the proper use of these covalent labeling reagents, and information about the specific biochemical problems that have been addressed with covalent labeling strategies. PMID:19016300

Semi-automatic mapping of geological Structures using UAV-based photogrammetric data: An image analysis approach

NASA Astrophysics Data System (ADS)

Vasuki, Yathunanthan; Holden, Eun-Jung; Kovesi, Peter; Micklethwaite, Steven

2014-08-01

Recent advances in data acquisition technologies, such as Unmanned Aerial Vehicles (UAVs), have led to a growing interest in capturing high-resolution rock surface images. However, due to the large volumes of data that can be captured in a short flight, efficient analysis of this data brings new challenges, especially the time it takes to digitise maps and extract orientation data. We outline a semi-automated method that allows efficient mapping of geological faults using photogrammetric data of rock surfaces, which was generated from aerial photographs collected by a UAV. Our method harnesses advanced automated image analysis techniques and human data interaction to rapidly map structures and then calculate their dip and dip directions. Geological structures (faults, joints and fractures) are first detected from the primary photographic dataset and the equivalent three dimensional (3D) structures are then identified within a 3D surface model generated by structure from motion (SfM). From this information the location, dip and dip direction of the geological structures are calculated. A structure map generated by our semi-automated method obtained a recall rate of 79.8% when compared against a fault map produced using expert manual digitising and interpretation methods. The semi-automated structure map was produced in 10 min whereas the manual method took approximately 7 h. In addition, the dip and dip direction calculation, using our automated method, shows a mean±standard error of 1.9°±2.2° and 4.4°±2.6° respectively with field measurements. This shows the potential of using our semi-automated method for accurate and efficient mapping of geological structures, particularly from remote, inaccessible or hazardous sites.

Abstracts of the Annual Meeting of Planetary Geologic Mappers, Flagstaff, AZ, 2008

NASA Technical Reports Server (NTRS)

Bleamaster, Leslie F., III (Editor); Tanaka, Kenneth L. (Editor); Kelley, Michael S. (Editor)

2008-01-01

Topics discussed include: Merging of the USGS Atlas of Mercury 1:5,000,000 Geologic Series; Geologic Mapping of the V-36 Thetis Regio Quadrangle: 2008 Progress Report; Structural Maps of the V-17 Beta Regio Quadrangle, Venus; Geologic Mapping of Isabella Quadrangle (V-50) and Helen Planitia, Venus; Renewed Mapping of the Nepthys Mons Quadrangle (V-54), Venus; Mapping the Sedna-Lavinia Region of Venus; Geologic Mapping of the Guinevere Planitia Quadrangle of Venus; Geological Mapping of Fortuna Tessera (V-2): Venus and Earth's Archean Process Comparisons; Geological Mapping of the North Polar Region of Venus (V-1 Snegurochka Planitia): Significant Problems and Comparisons to the Earth's Archean; Venus Quadrangle Geological Mapping: Use of Geoscience Data Visualization Systems in Mapping and Training; Geologic Map of the V-1 Snegurochka Planitia Quadrangle: Progress Report; The Fredegonde (V-57) Quadrangle, Venus: Characterization of the Venus Midlands; Formation and Evolution of Lakshmi Planum (V-7), Venus: Assessment of Models using Observations from Geological Mapping; Geologic Map of the Meskhent Tessera Quadrangle (V-3), Venus: Evidence for Early Formation and Preservation of Regional Topography; Geological Mapping of the Lada Terra (V-56) Quadrangle, Venus: A Progress Report; Geology of the Lachesis Tessera Quadrangle (V-18), Venus; Geologic Mapping of the Juno Chasma Quadrangle, Venus: Establishing the Relation Between Rifting and Volcanism; Geologic Mapping of V-19, V-28, and V-53; Lunar Geologic Mapping Program: 2008 Update; Geologic Mapping of the Marius Quadrangle, the Moon; Geologic Mapping along the Arabia Terra Dichotomy Boundary: Mawrth Vallis and Nili Fossae, Mars: Introductory Report; New Geologic Map of the Argyre Region of Mars; Geologic Evolution of the Martian Highlands: MTMs -20002, -20007, -25002, and -25007; Mapping Hesperia Planum, Mars; Geologic Mapping of the Meridiani Region, Mars; Geology of Holden Crater and the Holden and Ladon Multi-Ring Impact Basins, Margaritifer Terra, Mars; Geologic Mapping of Athabasca Valles; Geologic Mapping of MTM -30247, -35247 and -40247 Quadrangles, Reull Vallis Region of Mars; Geologic Mapping of the Martian Impact Crater Tooting; Geology of the Southern Utopia Planitia Highland-Lowland Boundary Plain: First Year Results and Second Year Plan; Mars Global Geologic Mapping: Amazonian Results; Recent Geologic Mapping Results for the Polar Regions of Mars; Geologic Mapping of the Medusae Fossae Formation on Mars (MC-8 SE and MC-23 NW) and the Northern Lowlands of Venus (V-16 and V-15); Geologic Mapping of the Zal, Hi'iaka, and Shamshu Regions of Io; Global Geologic Map of Europa; Material Units, Structures/Landforms, and Stratigraphy for the Global Geologic Map of Ganymede (1:15M); and Global Geologic Mapping of Io: Preliminary Results.

NOAA Office of Exploration and Research > About OER > Strategic Plan

Science.gov Websites

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NOAA Office of Exploration and Research > About OER > Overview

Science.gov Websites

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NOAA Office of Exploration and Research > About OER > Contact Us

Science.gov Websites

Organization Guiding Documents Organizational Structure Map of Staff and Affiliate Locations Strategic Plan Media News Room OER Symposium Overview Organization Guiding Documents Organizational Structure Map of Contact Us Home About OER Overview Organization Guiding Documents Organizational Structure Map of Staff

NOAA Office of Exploration and Research > About OER > Program Review

Science.gov Websites

Organization Guiding Documents Organizational Structure Map of Staff and Affiliate Locations Strategic Plan Media News Room OER Symposium Overview Organization Guiding Documents Organizational Structure Map of Program Review Home About OER Overview Organization Guiding Documents Organizational Structure Map of

Advances in detection of diffuse seafloor venting using structured light imaging.

NASA Astrophysics Data System (ADS)

Smart, C.; Roman, C.; Carey, S.

2016-12-01

Systematic, remote detection and high resolution mapping of low temperature diffuse hydrothermal venting is inefficient and not currently tractable using traditional remotely operated vehicle (ROV) mounted sensors. Preliminary results for hydrothermal vent detection using a structured light laser sensor were presented in 2011 and published in 2013 (Smart) with continual advancements occurring in the interim. As the structured light laser passes over active venting, the projected laser line effectively blurs due to the associated turbulence and density anomalies in the vent fluid. The degree laser disturbance is captured by a camera collecting images of the laser line at 20 Hz. Advancements in the detection of the laser and fluid interaction have included extensive normalization of the collected laser data and the implementation of a support vector machine algorithm to develop a classification routine. The image data collected over a hydrothermal vent field is then labeled as seafloor, bacteria or a location of venting. The results can then be correlated with stereo images, bathymetry and backscatter data. This sensor is a component of an ROV mounted imaging suite which also includes stereo cameras and a multibeam sonar system. Originally developed for bathymetric mapping, the structured light laser sensor, and other imaging suite components, are capable of creating visual and bathymetric maps with centimeter level resolution. Surveys are completed in a standard mowing the lawn pattern completing a 30m x 30m survey with centimeter level resolution in under an hour. Resulting co-registered data includes, multibeam and structured light laser bathymetry and backscatter, stereo images and vent detection. This system allows for efficient exploration of areas with diffuse and small point source hydrothermal venting increasing the effectiveness of scientific sampling and observation. Recent vent detection results collected during the 2013-2015 E/V Nautilus seasons will be presented. Smart, C. J. and Roman, C. and Carey, S. N. (2013) Detection of diffuse seafloor venting using structured light imaging, Geochemistry, Geophysics, Geosystems, 14, 4743-4757

Implementation of structure-mapping inference by event-file binding and action planning: a model of tool-improvisation analogies.

PubMed

Fields, Chris

2011-03-01

Structure-mapping inferences are generally regarded as dependent upon relational concepts that are understood and expressible in language by subjects capable of analogical reasoning. However, tool-improvisation inferences are executed by members of a variety of non-human primate and other species. Tool improvisation requires correctly inferring the motion and force-transfer affordances of an object; hence tool improvisation requires structure mapping driven by relational properties. Observational and experimental evidence can be interpreted to indicate that structure-mapping analogies in tool improvisation are implemented by multi-step manipulation of event files by binding and action-planning mechanisms that act in a language-independent manner. A functional model of language-independent event-file manipulations that implement structure mapping in the tool-improvisation domain is developed. This model provides a mechanism by which motion and force representations commonly employed in tool-improvisation structure mappings may be sufficiently reinforced to be available to inwardly directed attention and hence conceptualization. Predictions and potential experimental tests of this model are outlined.

Self-Consistent Chaotic Transport in a High-Dimensional Mean-Field Hamiltonian Map Model

DOE PAGES

Martínez-del-Río, D.; del-Castillo-Negrete, D.; Olvera, A.; ...

2015-10-30

We studied the self-consistent chaotic transport in a Hamiltonian mean-field model. This model provides a simplified description of transport in marginally stable systems including vorticity mixing in strong shear flows and electron dynamics in plasmas. Self-consistency is incorporated through a mean-field that couples all the degrees-of-freedom. The model is formulated as a large set of N coupled standard-like area-preserving twist maps in which the amplitude and phase of the perturbation, rather than being constant like in the standard map, are dynamical variables. Of particular interest is the study of the impact of periodic orbits on the chaotic transport and coherentmore » structures. Furthermore, numerical simulations show that self-consistency leads to the formation of a coherent macro-particle trapped around the elliptic fixed point of the system that appears together with an asymptotic periodic behavior of the mean field. To model this asymptotic state, we introduced a non-autonomous map that allows a detailed study of the onset of global transport. A turnstile-type transport mechanism that allows transport across instantaneous KAM invariant circles in non-autonomous systems is discussed. As a first step to understand transport, we study a special type of orbits referred to as sequential periodic orbits. Using symmetry properties we show that, through replication, high-dimensional sequential periodic orbits can be generated starting from low-dimensional periodic orbits. We show that sequential periodic orbits in the self-consistent map can be continued from trivial (uncoupled) periodic orbits of standard-like maps using numerical and asymptotic methods. Normal forms are used to describe these orbits and to find the values of the map parameters that guarantee their existence. Numerical simulations are used to verify the prediction from the asymptotic methods.« less

Self-Consistent Chaotic Transport in a High-Dimensional Mean-Field Hamiltonian Map Model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martínez-del-Río, D.; del-Castillo-Negrete, D.; Olvera, A.

We studied the self-consistent chaotic transport in a Hamiltonian mean-field model. This model provides a simplified description of transport in marginally stable systems including vorticity mixing in strong shear flows and electron dynamics in plasmas. Self-consistency is incorporated through a mean-field that couples all the degrees-of-freedom. The model is formulated as a large set of N coupled standard-like area-preserving twist maps in which the amplitude and phase of the perturbation, rather than being constant like in the standard map, are dynamical variables. Of particular interest is the study of the impact of periodic orbits on the chaotic transport and coherentmore » structures. Furthermore, numerical simulations show that self-consistency leads to the formation of a coherent macro-particle trapped around the elliptic fixed point of the system that appears together with an asymptotic periodic behavior of the mean field. To model this asymptotic state, we introduced a non-autonomous map that allows a detailed study of the onset of global transport. A turnstile-type transport mechanism that allows transport across instantaneous KAM invariant circles in non-autonomous systems is discussed. As a first step to understand transport, we study a special type of orbits referred to as sequential periodic orbits. Using symmetry properties we show that, through replication, high-dimensional sequential periodic orbits can be generated starting from low-dimensional periodic orbits. We show that sequential periodic orbits in the self-consistent map can be continued from trivial (uncoupled) periodic orbits of standard-like maps using numerical and asymptotic methods. Normal forms are used to describe these orbits and to find the values of the map parameters that guarantee their existence. Numerical simulations are used to verify the prediction from the asymptotic methods.« less

Mapping the magnonic landscape in patterned magnetic structures

NASA Astrophysics Data System (ADS)

Davies, C. S.; Poimanov, V. D.; Kruglyak, V. V.

2017-09-01

We report the development of a hybrid numerical/analytical model capable of mapping the spatially varying distributions of the local ferromagnetic resonance (FMR) frequency and dynamic magnetic susceptibility in a wide class of patterned and compositionally modulated magnetic structures. Starting from the numerically simulated static micromagnetic state, the magnetization is deliberately deflected orthogonally to its equilibrium orientation, and the magnetic fields generated in response to this deflection are evaluated using micromagnetic software. This allows us to calculate the elements of the effective demagnetizing tensor, which are then used within a linear analytical formalism to map the local FMR frequency and dynamic magnetic susceptibility. To illustrate the typical results that one can obtain using this model, we analyze three micromagnetic systems boasting nonuniformity in either one or two dimensions, and successfully explain the spin-wave emission observed in each case, demonstrating the ubiquitous nature of the Schlömann excitation mechanism underpinning the observations. Finally, the developed model of local FMR frequency can be used to explain how spin waves could be confined and steered using magnetic nonuniformities of various origins, rendering it a powerful tool for the mapping of the graded magnonic index in magnonics.

Surface-Constrained Volumetric Brain Registration Using Harmonic Mappings

PubMed Central

Joshi, Anand A.; Shattuck, David W.; Thompson, Paul M.; Leahy, Richard M.

2015-01-01

In order to compare anatomical and functional brain imaging data across subjects, the images must first be registered to a common coordinate system in which anatomical features are aligned. Intensity-based volume registration methods can align subcortical structures well, but the variability in sulcal folding patterns typically results in misalignment of the cortical surface. Conversely, surface-based registration using sulcal features can produce excellent cortical alignment but the mapping between brains is restricted to the cortical surface. Here we describe a method for volumetric registration that also produces an accurate one-to-one point correspondence between cortical surfaces. This is achieved by first parameterizing and aligning the cortical surfaces using sulcal landmarks. We then use a constrained harmonic mapping to extend this surface correspondence to the entire cortical volume. Finally, this mapping is refined using an intensity-based warp. We demonstrate the utility of the method by applying it to T1-weighted magnetic resonance images (MRI). We evaluate the performance of our proposed method relative to existing methods that use only intensity information; for this comparison we compute the inter-subject alignment of expert-labeled sub-cortical structures after registration. PMID:18092736

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karabacak, Özkan, E-mail: ozkan2917@gmail.com; Department of Electronic Systems, Aalborg University, 9220 Aalborg East; Alikoç, Baran, E-mail: alikoc@itu.edu.tr

Motivated by the chaos suppression methods based on stabilizing an unstable periodic orbit, we study the stability of synchronized periodic orbits of coupled map systems when the period of the orbit is the same as the delay in the information transmission between coupled units. We show that the stability region of a synchronized periodic orbit is determined by the Floquet multiplier of the periodic orbit for the uncoupled map, the coupling constant, the smallest and the largest Laplacian eigenvalue of the adjacency matrix. We prove that the stabilization of an unstable τ-periodic orbit via coupling with delay τ is possiblemore » only when the Floquet multiplier of the orbit is negative and the connection structure is not bipartite. For a given coupling structure, it is possible to find the values of the coupling strength that stabilizes unstable periodic orbits. The most suitable connection topology for stabilization is found to be the all-to-all coupling. On the other hand, a negative coupling constant may lead to destabilization of τ-periodic orbits that are stable for the uncoupled map. We provide examples of coupled logistic maps demonstrating the stabilization and destabilization of synchronized τ-periodic orbits as well as chaos suppression via stabilization of a synchronized τ-periodic orbit.« less

High-resolution forest mapping for behavioural studies in the Nature Reserve ‘Les Nouragues’, French Guiana

PubMed Central

Ringler, Max; Mangione, Rosanna; Pašukonis, Andrius; Rainer, Gerhard; Gyimesi, Kristin; Felling, Julia; Kronaus, Hannes; Réjou-Méchain, Maxime; Chave, Jérôme; Reiter, Karl; Ringler, Eva

2015-01-01

For animals with spatially complex behaviours at relatively small scales, the resolution of a global positioning system (GPS) receiver location is often below the resolution needed to correctly map animals’ spatial behaviour. Natural conditions such as canopy cover, canyons or clouds can further degrade GPS receiver reception. Here we present a detailed, high-resolution map of a 4.6 ha Neotropical river island and a 8.3 ha mainland plot with the location of every tree >5 cm DBH and all structures on the forest floor, which are relevant to our study species, the territorial frog Allobates femoralis (Dendrobatidae). The map was derived using distance- and compass-based survey techniques, rooted on dGPS reference points, and incorporates altitudinal information based on a LiDAR survey of the area. PMID:27053943

GIS-mapping of environmental assessment of the territories in the region of intense activity for the oil and gas complex for achievement the goals of the Sustainable Development (on the example of Russia)

NASA Astrophysics Data System (ADS)

Yermolaev, Oleg

2014-05-01

The uniform system of complex scientific-reference ecological-geographical should act as a base for the maintenance of the Sustainable Development (SD) concept in the territories of the Russian Federation subjects or certain regions. In this case, the assessment of the ecological situation in the regions can be solved by the conjugation of the two interrelated system - the mapping and the geoinformational. The report discusses the methodological aspects of the Atlas-mapping for the purposes of SD in the regions of Russia. The Republic of Tatarstan viewed as a model territory where a large-scale oil-gas complex "Tatneft" PLC works. The company functions for more than 60 years. Oil fields occupy an area of more than 38 000 km2; placed in its territory about 40 000 oil wells, more than 55 000 km of pipelines; more than 3 billion tons of oil was extracted. Methods for to the structure and requirements for the Atlas's content were outlined. The approaches to mapping of "an ecological dominant" of SD conceptually substantiated following the pattern of a large region of Russia. Several trends of thematically mapping were suggested to be distinguished in the Atlas's structure: • The background history of oil-fields mine working; • The nature preservation technologies while oil extracting; • The assessment of natural conditions of a humans vital activity; • Unfavorable and dangerous natural processes and phenomena; • The anthropogenic effect and environmental surroundings change; • The social-economical processes and phenomena. • The medical-ecological and geochemical processes and phenomena; Within these groups the other numerous groups can distinguished. The maps of unfavorable and dangerous processes and phenomena subdivided in accordance with the types of processes - of endogenous and exogenous origin. Among the maps of the anthropogenic effects on the natural surroundings one can differentiate the maps of the influence on different nature's spheres - atmosphere, hydrosphere, lithosphere, biosphere, etc. In this way, all thematic groups brought together into four main sections: • The introduction (the maps of a general condition and social-economical state, a region's rating in Republic; • The components of natural, social-economics systems that form the conditions for the ecological situations; • The integrated maps of exertion and change of the environment; • The strategy to reach an ecological equilibrium. The following data confirm that: more than 200 electronic analytical, complex and synthetic maps; more than 1000 small rivers basins, 6000 landscapes areas, 500 anthropogenic pollutions source, etc. The extensive information, richness and diversity of the maps content, objective indices used in the maps, open the door to wide opportunities to apply different methods of cartography analysis comprising both usual visional one and the geographical constructions, cartometry statistical data treatment, respectively. The methods of mathematical-mapping and computer modeling presume to compute spatial correlations and mutual conformity of phenomena and to estimate the homogeneity of the ecological conditions, to reveal the leading factors of distribution and phenomena and processes development using the means of multidimensional statistical analysis.

Toward digital geologic map standards: a progress report

USGS Publications Warehouse

Ulrech, George E.; Reynolds, Mitchell W.; Taylor, Richard B.

1992-01-01

Establishing modern scientific and technical standards for geologic maps and their derivative map products is vital to both producers and users of such maps as we move into an age of digital cartography. Application of earth-science data in complex geographic information systems, acceleration of geologic map production, and reduction of population costs require that national standards be developed for digital geologic cartography and computer analysis. Since December 1988, under commission of the Chief Geologic of the U.S. Geological Survey and the mandate of the National Geologic Mapping Program (with added representation from the Association of American State Geologists), a committee has been designing a comprehensive set of scientific map standards. Three primary issues were: (1) selecting scientific symbology and its digital representation; (2) creating an appropriate digital coding system that characterizes geologic features with respect to their physical properties, stratigraphic and structural relations, spatial orientation, and interpreted mode of origin; and (3) developing mechanisms for reporting levels of certainty for descriptive as well as measured properties. Approximately 650 symbols for geoscience maps, including present usage of the U.S Geological Survey, state geological surveys, industry, and academia have been identified and tentatively adopted. A proposed coding system comprises four-character groupings of major and minor codes that can identify all attributes of a geologic feature. Such a coding system allows unique identification of as many as 105 geologic names and values on a given map. The new standard will track closely the latest developments of the Proposed Standard for Digital Cartographic Data soon to be submitted to the National Institute of Standards and Technology by the Federal Interagency Coordinating Committee on Digital Cartography. This standard will adhere generally to the accepted definitions and specifications for spatial data transfer. It will require separate specifications of digital cartographic quality relating to positional accuracy and ranges of measured and interpreted values such as geologic age and rock composition. Provisional digital geologic map standards will be published for trial implementation. After approximately two years, when comments on the proposed standards have been solicited and modifications made, formal adoption of the standards will be recommended. Widespread acceptance of the new standards will depend on their applicability to the broadest range of earth-science map products and their adaptability to changing cartographic technology.

ASTER, ALI and Hyperion sensors data for lithological mapping and ore minerals exploration.

PubMed

Beiranvand Pour, Amin; Hashim, Mazlan

2014-01-01

This paper provides a review of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER), Advanced Land Imager (ALI), and Hyperion data and applications of the data as a tool for ore minerals exploration, lithological and structural mapping. Spectral information extraction from ASTER, ALI, and Hyperion data has great ability to assist geologists in all disciplines to map the distribution and detect the rock units exposed at the earth's surface. The near coincidence of Earth Observing System (EOS)/Terra and Earth Observing One (EO-1) platforms allows acquiring ASTER, ALI, and Hyperion imagery of the same ground areas, resulting accurate information for geological mapping applications especially in the reconnaissance stages of hydrothermal copper and gold exploration, chromite, magnetite, massive sulfide and uranium ore deposits, mineral components of soils and structural interpretation at both regional and district scales. Shortwave length infrared and thermal infrared bands of ASTER have sufficient spectral resolution to map fundamental absorptions of hydroxyl mineral groups and silica and carbonate minerals for regional mapping purposes. Ferric-iron bearing minerals can be discriminated using six unique wavelength bands of ALI spanning the visible and near infrared. Hyperion visible and near infrared bands (0.4 to 1.0 μm) and shortwave infrared bands (0.9 to 2.5 μm) allowed to produce image maps of iron oxide minerals, hydroxyl-bearing minerals, sulfates and carbonates in association with hydrothermal alteration assemblages, respectively. The techniques and achievements reviewed in the present paper can further introduce the efficacy of ASTER, ALI, and Hyperion data for future mineral and lithological mapping and exploration of the porphyry copper, epithermal gold, chromite, magnetite, massive sulfide and uranium ore deposits especially in arid and semi-arid territory.

Structured polarized light microscopy (SPLM) for mapping collagen fiber orientation of ocular tissues

NASA Astrophysics Data System (ADS)

Yang, Bin; Brazile, Bryn; Jan, Ning-Jiun; Voorhees, Andrew P.; Sigal, Ian A.

2018-02-01

Glaucoma is a disease characterized by progressive and irreversible vision loss leading to blindness. This vision loss is believed to be largely determined by the biomechanics of the optic nerve head region. Optic nerve head biomechanics, in turn, is determined by the properties of the constituent collagen. However, it is challenging to visualize and quantify collagen morphology and orientation in situ, and therefore often studies of the region collagen have used histological sections. Here we describe SPLM, a novel imaging technique that combines structured light illumination and polarized light microscopy (PLM) to enable collagen fiber visualization and fiber orientation mapping without requiring tissue sectioning. We developed a custom automated SPLM imaging system based on an upright microscope and a digital micromirror device (DMD) projector. The high spatial frequency patterns were used to achieve effective background suppression. Enhanced scattering sensitivity with SPLM resulted in images with highly improved visibility of collagen structures, even of tissues covered by pigment. SPLM produced improved fiber orientation maps from superficial layers compared to depth-averaged orientation from regular PLM. SPLM imaging provides valuable information of collagen fiber morphology and orientation in situ thus strengthening the study of ocular collagen fiber biomechanics and glaucoma.

Surficial geology, structure, and thickness of selected geohydrologic units in the Columbia Plateau, Washington

USGS Publications Warehouse

Drost, B.W.; Whiteman, K.J.

1986-01-01

A 2-1/2 year study of the Columbia Plateau in Washington was begun in March 1982 to define spatial and temporal variations in dissolved sodium in the Columbia River Basalt Group aquifers and to relate these variations to the groundwater system and its geologic framework. This report describes the geologic framework , including the vertical and areal extent of the major basalt units, interbeds, and overlying materials. Thickness and structure of the Grande Ronde, Wanapum, and Saddle Mountains Basalts, thickness of the interbeds between the Grande Ronde and Wanapum, and Wanapum and Saddle Mountains Basalts, and thickness of the overburden were mapped at a scale of 1:500,000. Information was compiled from 2,500 well records using chemical analyses of core or drill chips, geophysical logs, and driller 's logs, in decreasing order of reliability. Surficial geology and surficial expression of structural features were simplified from published maps to provide maps with this information at the 1:500,000 scale. This report is intended to serve as a base for evaluating the distribution of dissolved sodium in basalt aquifers and as a base for future water resource studies. (USGS)

Structure-function analysis of the extracellular domain of the pneumococcal cell division site positioning protein MapZ

NASA Astrophysics Data System (ADS)

Manuse, Sylvie; Jean, Nicolas L.; Guinot, Mégane; Lavergne, Jean-Pierre; Laguri, Cédric; Bougault, Catherine M.; Vannieuwenhze, Michael S.; Grangeasse, Christophe; Simorre, Jean-Pierre

2016-06-01

Accurate placement of the bacterial division site is a prerequisite for the generation of two viable and identical daughter cells. In Streptococcus pneumoniae, the positive regulatory mechanism involving the membrane protein MapZ positions precisely the conserved cell division protein FtsZ at the cell centre. Here we characterize the structure of the extracellular domain of MapZ and show that it displays a bi-modular structure composed of two subdomains separated by a flexible serine-rich linker. We further demonstrate in vivo that the N-terminal subdomain serves as a pedestal for the C-terminal subdomain, which determines the ability of MapZ to mark the division site. The C-terminal subdomain displays a patch of conserved amino acids and we show that this patch defines a structural motif crucial for MapZ function. Altogether, this structure-function analysis of MapZ provides the first molecular characterization of a positive regulatory process of bacterial cell division.

Development of an Unmanned Aerial System (UAS) for Scaling Terrestrial Ecosystem Traits

NASA Astrophysics Data System (ADS)

Meng, R.; McMahon, A. M.; Serbin, S.; Rogers, A.

2015-12-01

The next generation of Ecosystem and Earth System Models (EESMs) will require detailed information on ecosystem structure and function, including properties of vegetation related to carbon (C), water, and energy cycling, in order to project the future state of ecosystems. High spatial-temporal resolution measurements of terrestrial ecosystem are also important for EESMs, because they can provide critical inputs and benchmark datasets for evaluation of EESMs simulations across scales. The recent development of high-quality, low-altitude remote sensing platforms or small UAS (< 25 kg) enables measurements of terrestrial ecosystems at unprecedented temporal and spatial scales. Specifically, these new platforms can provide detailed information on patterns and processes of terrestrial ecosystems at a critical intermediate scale between point measurements and suborbital and satellite platforms. Given their potential for sub-decimeter spatial resolution, improved mission safety, high revisit frequency, and reduced operation cost, these platforms are of particular interest in the development of ecological scaling algorithms to parameterize and benchmark EESMs, particularly over complex and remote terrain. Our group is developing a small UAS platform and integrated sensor package focused on measurement needs for scaling and informing ecosystem modeling activities, as well as scaling and mapping plant functional traits. To do this we are developing an integrated software workflow and hardware package using off-the-shelf instrumentation including a high-resolution digital camera for Structure from Motion, spectroradiometer, and a thermal infrared camera. Our workflow includes platform design, measurement, image processing, data management, and information extraction. The fusion of 3D structure information, thermal-infrared imagery, and spectroscopic measurements, will provide a foundation for the development of ecological scaling and mapping algorithms. Our initial focus is in temperate forests but near-term research will expand into the high-arctic and eventually tropical systems. The results of this prototype study show that off-the-shelf technology can be used to develop a low-cost alternative for mapping plant traits and three-dimensional structure for ecological research.

Direct and accelerated parameter mapping using the unscented Kalman filter.

PubMed

Zhao, Li; Feng, Xue; Meyer, Craig H

2016-05-01

To accelerate parameter mapping using a new paradigm that combines image reconstruction and model regression as a parameter state-tracking problem. In T2 mapping, the T2 map is first encoded in parameter space by multi-TE measurements and then encoded by Fourier transformation with readout/phase encoding gradients. Using a state transition function and a measurement function, the unscented Kalman filter can describe T2 mapping as a dynamic system and directly estimate the T2 map from the k-space data. The proposed method was validated with a numerical brain phantom and volunteer experiments with a multiple-contrast spin echo sequence. Its performance was compared with a conjugate-gradient nonlinear inversion method at undersampling factors of 2 to 8. An accelerated pulse sequence was developed based on this method to achieve prospective undersampling. Compared with the nonlinear inversion reconstruction, the proposed method had higher precision, improved structural similarity and reduced normalized root mean squared error, with acceleration factors up to 8 in numerical phantom and volunteer studies. This work describes a new perspective on parameter mapping by state tracking. The unscented Kalman filter provides a highly accelerated and efficient paradigm for T2 mapping. © 2015 Wiley Periodicals, Inc.

Cross-correlation between the 170 GHz survey map and the COBE differential microwave radiometer first-year maps

NASA Technical Reports Server (NTRS)

Ganga, Ken; Cheng, ED; Meyer, Stephan; Page, Lyman

1993-01-01

This letter describes results of a cross-correlation between the 170 GHz partial-sky survey, made with a 3.8 deg beam balloon-borne instrument, and the COBE DMR 'Fit Technique' reduced galaxy all-sky map with a beam of 7 deg. The strong correlation between the data sets implies that the observed structure is consistent with thermal variations in a 2.7 K emitter. A chi-square analysis applied to the correlation function rules out the assumption that there is no structure in either of the two maps. A second test shows that if the DMR map has structure but the 170 GHz map does not, the probability of obtaining the observed correlation is small. Further analyses support the assumption that both maps have structure and that the 170 GHz-DMR cross-correlation is consistent with the analogous DMR correlation function. Maps containing various combinations of noise and Harrison-Zel'dovich power spectra are simulated and correlated to reinforce the result. The correlation provides compelling evidence that both instruments have observed fluctuations consistent with anisotropies in the cosmic microwave background.

[Road map for health and safety management systems in healthcare facilities, according to the OHSAS 18001:2007 standard].

PubMed

Pugliese, F; Albini, E; Serio, O; Apostoli, P

2011-01-01

The 81/2008 Act has defined a model of a health and safety management system that can contribute to prevent the occupational health and safety risks. We have developed the structure of a health and safety management system model and the necessary tools for its implementation in health care facilities. The realization of a model is structured in various phases: initial review, safety policy, planning, implementation, monitoring, management review and continuous improvement. Such a model, in continuous evolution, is based on the responsibilities of the different corporate characters and on an accurate analysis of risks and involved norms.

A critical review of seismotectonic setting of the Campanian Plain (Southern Italy) in GIS environment.

NASA Astrophysics Data System (ADS)

Gaudiosi, Germana; Alessio, Giuliana; Luiso, Paola; Nappi, Rosa; Ricciolino, Patrizia

2010-05-01

The Plio-Pleistocene Campanian Plain is a structural depression of the Southern Italy located between the eastern side of the Tyrrhenian Sea and the Southern Apennine chain. It is surrounded to the North, East and South by the Mesozoic carbonate massifs of the Apennine chain and, to the West, by the Tyrrhenian Sea. The graben origin is similar to other peri-Tyrrhenian regions and is related to a stretching and thinning of the continental crust by the counterclockwise rotation of the Italian peninsula and the contemporaneous opening of the Tyrrhenian sea. The consequent subsidence of the Campanian carbonate platform took place along the Tyrrhenian coast during the Plio-Pleistocene with a maximum vertical extent of 5 km. The plain is filled by volcanic and clastic, continental and marine deposits. Voluminous volcanic activity of Roccamonfina, Campi Flegrei, Ischia, Procida and Vesuvio occurred in the Plain during the Quaternary. In the middle of the plain lies the city of Naples, bordered by the two active volcanoes of Campi Flegrei and Vesuvio. It is a very densely inhabited area that is exposed to high potential volcanic risk. The stress field acting in the Campanian area is poorly known. Structural observations on the Pleistocene faults suggest normal to sinistral movements for the NW- SE-trending faults and normal to dextral for the NE-SW-trending structures. These movements are consistent with those of the structures affecting the inner margin of the Southern Apennines. The Campanian Plain is characterized by seismicity of energy lower than the seismic activity of the Southern Apennine chain. The earthquakes mainly occur along the margin of the plain, in the volcanic areas and a minor seismicity spreads out inside the Plain. The aim of this paper is an attempt to identify active, outcropping and buried fault systems of the Campanian plain through the correlation between seismicity and tectonic structures. Seismic, geologic and geomorphologic data have been analysed in GIS environment. In particular, the seismological data used in this study are relative both to the historical and recent seismic activity, collected by the following Catalogues: CPTI04 Catalogue of Parametric Italian Earthquakes, 2004 (217 b.C to 2002); CSI Catalogue of Instrumental Italian Earthquakes (1981-2002); CNT Seismic Bulletin of Istituto Nazionale di Geofisica e Vulcanologia (2003-2008); Data Base of Seismic Laboratory of Osservatorio Vesuviano (Istituto Nazionale di Geofisica e Vulcanologia) (2000-2009); SisCam Catalogue (Seismotectonic Information System of the Campanian Region) (1980-2000). Seismic data were homogenized in an only one Catalogue. The seismicity of Campi Flegrei and Vesuvio volcanoes have not been studied. The Geological Dataset consists of a merge of all outcropping and buried faults extracted from the available geological and structural maps: Geological map of Italy 1:100.000; Geological map of Southern Italy 1:250.000; Neotectonic Map of Italy 1:500.000; Structural Map of Italy 1:500.000. Two main NW-SE and NE-SW active fault systems have been identified from the joined analysis of seismic epicentres and faults. Moreover, tectonic structure without correlated seismic activity and a spread seismicity, apparently not linked with already known structures (buried faults?), have been identified.

Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile, and accurate RNA structure analysis

PubMed Central

Smola, Matthew J.; Rice, Greggory M.; Busan, Steven; Siegfried, Nathan A.; Weeks, Kevin M.

2016-01-01

SHAPE chemistries exploit small electrophilic reagents that react with the 2′-hydroxyl group to interrogate RNA structure at single-nucleotide resolution. Mutational profiling (MaP) identifies modified residues based on the ability of reverse transcriptase to misread a SHAPE-modified nucleotide and then counting the resulting mutations by massively parallel sequencing. The SHAPE-MaP approach measures the structure of large and transcriptome-wide systems as accurately as for simple model RNAs. This protocol describes the experimental steps, implemented over three days, required to perform SHAPE probing and construct multiplexed SHAPE-MaP libraries suitable for deep sequencing. These steps include RNA folding and SHAPE structure probing, mutational profiling by reverse transcription, library construction, and sequencing. Automated processing of MaP sequencing data is accomplished using two software packages. ShapeMapper converts raw sequencing files into mutational profiles, creates SHAPE reactivity plots, and provides useful troubleshooting information, often within an hour. SuperFold uses these data to model RNA secondary structures, identify regions with well-defined structures, and visualize probable and alternative helices, often in under a day. We illustrate these algorithms with the E. coli thiamine pyrophosphate riboswitch, E. coli 16S rRNA, and HIV-1 genomic RNAs. SHAPE-MaP can be used to make nucleotide-resolution biophysical measurements of individual RNA motifs, rare components of complex RNA ensembles, and entire transcriptomes. The straightforward MaP strategy greatly expands the number, length, and complexity of analyzable RNA structures. PMID:26426499

Mapping Collaborative Relations among Canada's Chronic Disease Prevention Organizations

PubMed Central

Hanusaik, Nancy; Maximova, Katerina; Paradis, Gilles; O'Loughlin, Jennifer L.

2016-01-01

In the field of chronic disease prevention (CDP), collaborations between organizations provide a vital framework for intersectoral engagement and exchanges of knowledge, expertise and resources. However, little is known about how the structures of preventive health systems actually articulate with CDP capacity and outcomes. Drawing upon data from the Public Health Organizational Capacity Study – a repeat census of all public health organizations in Canada – we used social network analysis to map and examine interorganizational collaborative relationships in the Canadian preventive health system. The network of relationships obtained through our study shows that provincial boundaries remain a major factor influencing collaborative patterns. Not only are collaborations scarce on the interprovincial level but they are also mostly limited to links with federal and multi-provincial organizations. Given this finding, federal or multi-provincial organizations that occupy central bridging positions in the Canadian CDP collaborative structure should serve as key players for shaping CDP practices in the country. PMID:27585030

Cascades of alternating pitchfork and flip bifurcations in H-bridge inverters

NASA Astrophysics Data System (ADS)

Avrutin, Viktor; Zhusubaliyev, Zhanybai T.; Mosekilde, Erik

2017-04-01

Power electronic DC/AC converters (inverters) play an important role in modern power engineering. These systems are also of considerable theoretical interest because their dynamics is influenced by the presence of two vastly different forcing frequencies. As a consequence, inverter systems may be modeled in terms of piecewise smooth maps with an extremely high number of switching manifolds. We have recently shown that models of this type can demonstrate a complicated bifurcation structure associated with the occurrence of border collisions. Considering the example of a PWM H-bridge single-phase inverter, the present paper discusses a number of unusual phenomena that can occur in piecewise smooth maps with a very large number of switching manifolds. We show in particular how smooth (pitchfork and flip) bifurcations may form a macroscopic pattern that stretches across the overall bifurcation structure. We explain the observed bifurcation phenomena, show under which conditions they occur, and describe them quantitatively by means of an analytic approximation.

Mapping Collaborative Relations among Canada's Chronic Disease Prevention Organizations.

PubMed

Contandriopoulos, Damien; Hanusaik, Nancy; Maximova, Katerina; Paradis, Gilles; O'Loughlin, Jennifer L

2016-08-01

In the field of chronic disease prevention (CDP), collaborations between organizations provide a vital framework for intersectoral engagement and exchanges of knowledge, expertise and resources. However, little is known about how the structures of preventive health systems actually articulate with CDP capacity and outcomes. Drawing upon data from the Public Health Organizational Capacity Study - a repeat census of all public health organizations in Canada - we used social network analysis to map and examine interorganizational collaborative relationships in the Canadian preventive health system. The network of relationships obtained through our study shows that provincial boundaries remain a major factor influencing collaborative patterns. Not only are collaborations scarce on the interprovincial level but they are also mostly limited to links with federal and multi-provincial organizations. Given this finding, federal or multi-provincial organizations that occupy central bridging positions in the Canadian CDP collaborative structure should serve as key players for shaping CDP practices in the country. Copyright © 2016 Longwoods Publishing.

Development of Improved Modeling and Analysis Techniques for Dynamics of Shell Structures

DTIC Science & Technology

1991-07-24

Engineering Sciences and Center for Space Structures and Control University of Colorado,Campus Box 429 Boulder, Colorado 80309 Accesion :or -.... ... i...system architecture ; third, to implement a decomposi- tion/mapping procedure that matches as far as possible the layout of the processors to the...element computations. In particular. we address issues that are related to the processor memory size. to the SIMD architecture and to the fast

A strand graph semantics for DNA-based computation

PubMed Central

Petersen, Rasmus L.; Lakin, Matthew R.; Phillips, Andrew

2015-01-01

DNA nanotechnology is a promising approach for engineering computation at the nanoscale, with potential applications in biofabrication and intelligent nanomedicine. DNA strand displacement is a general strategy for implementing a broad range of nanoscale computations, including any computation that can be expressed as a chemical reaction network. Modelling and analysis of DNA strand displacement systems is an important part of the design process, prior to experimental realisation. As experimental techniques improve, it is important for modelling languages to keep pace with the complexity of structures that can be realised experimentally. In this paper we present a process calculus for modelling DNA strand displacement computations involving rich secondary structures, including DNA branches and loops. We prove that our calculus is also sufficiently expressive to model previous work on non-branching structures, and propose a mapping from our calculus to a canonical strand graph representation, in which vertices represent DNA strands, ordered sites represent domains, and edges between sites represent bonds between domains. We define interactions between strands by means of strand graph rewriting, and prove the correspondence between the process calculus and strand graph behaviours. Finally, we propose a mapping from strand graphs to an efficient implementation, which we use to perform modelling and simulation of DNA strand displacement systems with rich secondary structure. PMID:27293306

Paleostress Analysis with Reflection Seismic Data: Example from the Songliao Basin, Northeast China

NASA Astrophysics Data System (ADS)

Liu, G.; Persaud, P.; Zhang, Y.

2017-12-01

Currently paleostress inversion using fault-slip data is a well established approach. However, the deformation history contained in folds has not yet been fully utilized to determine the paleostress field. By applying a 2D FFT-based algorithm to a structure or isopach map derived from reflection seismic data, we find a new way of exploiting the information preserved in folds to determine the paleostress. Our method requires that the strata have a large areal extent and are well preserved. After pre-processing the maps, we find that in the frequency-wavenumber (F-K) domain, folds with similar strikes are grouped into spectrum belts. Each belt parallels the short axis of the fold group and can therefore indicate the direction of the associated maximum horizontal stress. Some information on the relative chronology of stresses can be deduced by comparing the structure and isopach spectrum maps, e.g., if the structure spectrum map has one more spectrum belt than that of the isopach map (an approximate paleo-structure map of the corresponding stratum), we can conclude that the indicated stress postdated the deposition of the stratum. We selected three Late Cretaceous strata from a 3D seismic survey located in the intracontinental Songliao Basin, northeast China. The Songliao has experienced four episodes of deformation: mantle upwelling, rifting, postrift thermal subsidence and structural inversion (Feng et al., 2009). The selected strata were deposited during the third stage. Three structure and two isopach maps were decomposed in the F-K domain. Spectral analysis of the lower isopach map shows eight paleostress directions. We also identify a ninth paleostress in addition to the previous eight from the structure maps and the upper isopach map. The eight stress directions that exist in both the isopach and structure maps may have been active throughout the time period spanned by the strata. We interpret the ninth paleostress as being active after the deposition of the lower stratum. The derived paleostress field fits well with the interpretations of other workers and provides more accurate stress directions and chronology. We further apply this technique to the Central Sichuan basin, southwest China, and confirm the multi-directional compressional tectonics of that basin.

Zirconium phosphatidylcholine-based nanocapsules as an in vivo degradable drug delivery system of MAP30, a momordica anti-HIV protein.

PubMed

Caizhen, Guo; Yan, Gao; Ronron, Chang; Lirong, Yang; Panpan, Chu; Xuemei, Hu; Yuanbiao, Qiao; Qingshan, Li

2015-04-10

An essential in vivo drug delivery system of a momordica anti-HIV protein, MAP30, was developed through encapsulating in chemically synthesized matrices of zirconium egg- and soy-phosphatidylcholines, abbreviated to Zr/EPC and Zr/SPC, respectively. Matrices were characterized by transmission electron microscopy and powder X-ray diffractometry studies. Zr/EPC granule at an approximate diameter of 69.43±7.78 nm was a less efficient encapsulator than the granule of Zr/SPC. Interlayer spacing of the matrices encapsulating MAP30 increased from 8.8 and 9.7 Å to 7.4 and 7.9 nm, respectively. In vivo kinetics on degradation and protein release was performed by analyzing the serum sampling of intravenously injected SPF chickens. The first order and biphasic variations were obtained for in vivo kinetics using equilibrium dialysis. Antimicrobial and anti-HIV assays yielded greatly decreased MIC50 and EC50 values of nanoformulated MAP30. An acute toxicity of MAP30 encapsulated in Zr/EPC occurred at a single intravenous dose above 14.24 mg/kg bw in NIH/KM/ICR mice. The folding of MAP30 from Zr/EPC sustained in vivo chickens for more than 8 days in high performance liquid chromatography assays. These matrices could protect MAP30 efficiently with strong structure retention, lowered toxicity and prolonged in vivo life. Copyright © 2015 Elsevier B.V. All rights reserved.

Abstracts of the Annual Meeting of Planetary Geologic Mappers, San Antonio, TX, 2009

NASA Technical Reports Server (NTRS)

Bleamaster, Leslie F., III (Editor); Tanaka, Kenneth L.; Kelley, Michael S.

2009-01-01

Topics covered include: Geologic Mapping of the Beta-Atla-Themis (BAT) Region of Venus: A Progress Report; Geologic Map of the Snegurochka Planitia Quadrangle (V-1): Implications for Tectonic and Volcanic History of the North Polar Region of Venus; Preliminary Geological Map of the Fortuna Tessera (V-2) Quadrangle, Venus; Geological Map of the Fredegonde (V-57) Quadrangle, Venus; Geological Mapping of the Lada Terra (V-56) Quadrangle, Venus; Geologic Mapping of V-19; Lunar Geologic Mapping: A Preliminary Map of a Portion of the LQ-10 ("Marius") Quadrangle; Geologic Mapping of the Lunar South Pole, Quadrangle LQ-30: Volcanic History and Stratigraphy of Schr dinger Basin; Geologic Mapping along the Arabia Terra Dichotomy Boundary: Mawrth Vallis and Nili Fossae, Mars; Geologic Mapping Investigations of the Northwest Rim of Hellas Basin, Mars; Geologic Mapping of the Meridiani Region of Mars; Geology of a Portion of the Martian Highlands: MTMs -20002, -20007, -25002 and -25007; Geologic Mapping of Holden Crater and the Uzboi-Ladon-Morava Outflow System; Mapping Tyrrhena Patera and Hesperia Planum, Mars; Geologic Mapping of Athabaca Valles; Geologic Mapping of MTM -30247, -35247 and -40247 Quadrangles, Reull Vallis Region, Mars Topography of the Martian Impact Crater Tooting; Mars Structural and Stratigraphic Mapping along the Coprates Rise; Geology of Libya Montes and the Interbasin Plains of Northern Tyrrhena Terra, Mars: Project Introduction and First Year Work Plan; Geology of the Southern Utopia Planitia Highland-Lowland Boundary Plain: Second Year Results and Third Year Plan; Mars Global Geologic Mapping: About Half Way Done; New Geologic Map of the Scandia Region of Mars; Geologic Mapping of the Medusae Fossae Formation on Mars and the Northern Lowland Plains of Venus; Volcanism on Io: Insights from Global Geologic Mapping; and Planetary Geologic Mapping Handbook - 2009.

Electron crystallography reveals that substrate release from the PTS IIC glucose transporter is coupled to a subtle conformational change.

PubMed

Kalbermatter, David; Chiu, Po-Lin; Jeckelmann, Jean-Marc; Ucurum, Zöhre; Walz, Thomas; Fotiadis, Dimitrios

2017-07-01

The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) is a structurally and functionally complex system that mediates sugar uptake in bacteria. Besides several soluble subunits, the glucose-specific PTS includes the integral membrane protein IICB that couples the transmembrane transport of glucose to its phosphorylation. Here, we used electron crystallography of sugar-embedded tubular crystals of the glucose-specific IIC transport domain from Escherichia coli (ecIIC glc ) to visualize the structure of the transporter in the presence and absence of its substrate. Using an in vivo transport assay and binding competition experiments, we first established that, while it transports d-glucose, ecIIC glc does not bind l-glucose. We then determined the projection structure of ecIIC glc from tubular crystals embedded in d- and l-glucose and found a subtle conformational change. From comparison of the ecIIC glc projection maps with crystal structures of other IIC transporters, we can deduce that the transporter adopts an inward-facing conformation, and that the maps in the presence and absence of the substrate reflect the transporter before and after release of the transported glucose into the cytoplasm. The transition associated with substrate release appears to require a subtle structural rearrangement in the region that includes hairpin 1. Copyright © 2017 Elsevier Inc. All rights reserved.

Mediastinal lymph node detection and station mapping on chest CT using spatial priors and random forest

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Jiamin; Hoffman, Joanne; Zhao, Jocelyn

2016-07-15

Purpose: To develop an automated system for mediastinal lymph node detection and station mapping for chest CT. Methods: The contextual organs, trachea, lungs, and spine are first automatically identified to locate the region of interest (ROI) (mediastinum). The authors employ shape features derived from Hessian analysis, local object scale, and circular transformation that are computed per voxel in the ROI. Eight more anatomical structures are simultaneously segmented by multiatlas label fusion. Spatial priors are defined as the relative multidimensional distance vectors corresponding to each structure. Intensity, shape, and spatial prior features are integrated and parsed by a random forest classifiermore » for lymph node detection. The detected candidates are then segmented by the following curve evolution process. Texture features are computed on the segmented lymph nodes and a support vector machine committee is used for final classification. For lymph node station labeling, based on the segmentation results of the above anatomical structures, the textual definitions of mediastinal lymph node map according to the International Association for the Study of Lung Cancer are converted into patient-specific color-coded CT image, where the lymph node station can be automatically assigned for each detected node. Results: The chest CT volumes from 70 patients with 316 enlarged mediastinal lymph nodes are used for validation. For lymph node detection, their system achieves 88% sensitivity at eight false positives per patient. For lymph node station labeling, 84.5% of lymph nodes are correctly assigned to their stations. Conclusions: Multiple-channel shape, intensity, and spatial prior features aggregated by a random forest classifier improve mediastinal lymph node detection on chest CT. Using the location information of segmented anatomic structures from the multiatlas formulation enables accurate identification of lymph node stations.« less

Structural and mechanical heterogeneity of the erythrocyte membrane reveals hallmarks of membrane stability.

PubMed

Picas, Laura; Rico, Félix; Deforet, Maxime; Scheuring, Simon

2013-02-26

The erythrocyte membrane, a metabolically regulated active structure that comprises lipid molecules, junctional complexes, and the spectrin network, enables the cell to undergo large passive deformations when passing through the microvascular system. Here we use atomic force microscopy (AFM) imaging and quantitative mechanical mapping at nanometer resolution to correlate structure and mechanics of key components of the erythrocyte membrane, crucial for cell integrity and function. Our data reveal structural and mechanical heterogeneity modulated by the metabolic state at unprecedented nanometer resolution. ATP-depletion, reducing skeletal junction phosphorylation in RBC cells, leads to membrane stiffening. Analysis of ghosts and shear-force opened erythrocytes show that, in the absence of cytosolic kinases, spectrin phosphorylation results in membrane stiffening at the extracellular face and a reduced junction remodeling in response to loading forces. Topography and mechanical mapping of single components at the cytoplasmic face reveal that, surprisingly, spectrin phosphorylation by ATP softens individual filaments. Our findings suggest that, besides the mechanical signature of each component, the RBC membrane mechanics is regulated by the metabolic state and the assembly of its structural elements.

Generation of Well-Relaxed All-Atom Models of Large Molecular Weight Polymer Melts: A Hybrid Particle-Continuum Approach Based on Particle-Field Molecular Dynamics Simulations.

PubMed

De Nicola, Antonio; Kawakatsu, Toshihiro; Milano, Giuseppe

2014-12-09

A procedure based on Molecular Dynamics (MD) simulations employing soft potentials derived from self-consistent field (SCF) theory (named MD-SCF) able to generate well-relaxed all-atom structures of polymer melts is proposed. All-atom structures having structural correlations indistinguishable from ones obtained by long MD relaxations have been obtained for poly(methyl methacrylate) (PMMA) and poly(ethylene oxide) (PEO) melts. The proposed procedure leads to computational costs mainly related on system size rather than to the chain length. Several advantages of the proposed procedure over current coarse-graining/reverse mapping strategies are apparent. No parametrization is needed to generate relaxed structures of different polymers at different scales or resolutions. There is no need for special algorithms or back-mapping schemes to change the resolution of the models. This characteristic makes the procedure general and its extension to other polymer architectures straightforward. A similar procedure can be easily extended to the generation of all-atom structures of block copolymer melts and polymer nanocomposites.

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures.

PubMed

McGreevy, Ryan; Singharoy, Abhishek; Li, Qufei; Zhang, Jingfen; Xu, Dong; Perozo, Eduardo; Schulten, Klaus

2014-09-01

X-ray crystallography remains the most dominant method for solving atomic structures. However, for relatively large systems, the availability of only medium-to-low-resolution diffraction data often limits the determination of all-atom details. A new molecular dynamics flexible fitting (MDFF)-based approach, xMDFF, for determining structures from such low-resolution crystallographic data is reported. xMDFF employs a real-space refinement scheme that flexibly fits atomic models into an iteratively updating electron-density map. It addresses significant large-scale deformations of the initial model to fit the low-resolution density, as tested with synthetic low-resolution maps of D-ribose-binding protein. xMDFF has been successfully applied to re-refine six low-resolution protein structures of varying sizes that had already been submitted to the Protein Data Bank. Finally, via systematic refinement of a series of data from 3.6 to 7 Å resolution, xMDFF refinements together with electrophysiology experiments were used to validate the first all-atom structure of the voltage-sensing protein Ci-VSP.

Bifurcation structure of successive torus doubling

NASA Astrophysics Data System (ADS)

Sekikawa, Munehisa; Inaba, Naohiko; Yoshinaga, Tetsuya; Tsubouchi, Takashi

2006-01-01

The authors discuss the “embryology” of successive torus doubling via the bifurcation theory, and assert that the coupled map of a logistic map and a circle map has a structure capable of generating infinite number of torus doublings.

A hybrid short read mapping accelerator

PubMed Central

2013-01-01

Background The rapid growth of short read datasets poses a new challenge to the short read mapping problem in terms of sensitivity and execution speed. Existing methods often use a restrictive error model for computing the alignments to improve speed, whereas more flexible error models are generally too slow for large-scale applications. A number of short read mapping software tools have been proposed. However, designs based on hardware are relatively rare. Field programmable gate arrays (FPGAs) have been successfully used in a number of specific application areas, such as the DSP and communications domains due to their outstanding parallel data processing capabilities, making them a competitive platform to solve problems that are “inherently parallel”. Results We present a hybrid system for short read mapping utilizing both FPGA-based hardware and CPU-based software. The computation intensive alignment and the seed generation operations are mapped onto an FPGA. We present a computationally efficient, parallel block-wise alignment structure (Align Core) to approximate the conventional dynamic programming algorithm. The performance is compared to the multi-threaded CPU-based GASSST and BWA software implementations. For single-end alignment, our hybrid system achieves faster processing speed than GASSST (with a similar sensitivity) and BWA (with a higher sensitivity); for pair-end alignment, our design achieves a slightly worse sensitivity than that of BWA but has a higher processing speed. Conclusions This paper shows that our hybrid system can effectively accelerate the mapping of short reads to a reference genome based on the seed-and-extend approach. The performance comparison to the GASSST and BWA software implementations under different conditions shows that our hybrid design achieves a high degree of sensitivity and requires less overall execution time with only modest FPGA resource utilization. Our hybrid system design also shows that the performance bottleneck for the short read mapping problem can be changed from the alignment stage to the seed generation stage, which provides an additional requirement for the future development of short read aligners. PMID:23441908

Automated integration of lidar into the LANDFIRE product suite

USGS Publications Warehouse

Peterson, Birgit; Nelson, Kurtis; Seielstad, Carl; Stoker, Jason M.; Jolly, W. Matt; Parsons, Russell

2015-01-01

Accurate information about three-dimensional canopy structure and wildland fuel across the landscape is necessary for fire behaviour modelling system predictions. Remotely sensed data are invaluable for assessing these canopy characteristics over large areas; lidar data, in particular, are uniquely suited for quantifying three-dimensional canopy structure. Although lidar data are increasingly available, they have rarely been applied to wildland fuels mapping efforts, mostly due to two issues. First, the Landscape Fire and Resource Planning Tools (LANDFIRE) program, which has become the default source of large-scale fire behaviour modelling inputs for the US, does not currently incorporate lidar data into the vegetation and fuel mapping process because spatially continuous lidar data are not available at the national scale. Second, while lidar data are available for many land management units across the US, these data are underutilized for fire behaviour applications. This is partly due to a lack of local personnel trained to process and analyse lidar data. This investigation addresses these issues by developing the Creating Hybrid Structure from LANDFIRE/lidar Combinations (CHISLIC) tool. CHISLIC allows individuals to automatically generate a suite of vegetation structure and wildland fuel parameters from lidar data and infuse them into existing LANDFIRE data sets. CHISLIC will become available for wider distribution to the public through a partnership with the U.S. Forest Service’s Wildland Fire Assessment System (WFAS) and may be incorporated into the Wildland Fire Decision Support System (WFDSS) with additional design and testing. WFAS and WFDSS are the primary systems used to support tactical and strategic wildland fire management decisions.

Supporting creativity and appreciation of uncertainty in exploring geo-coded public health data.

PubMed

Thew, S L; Sutcliffe, A; de Bruijn, O; McNaught, J; Procter, R; Jarvis, Paul; Buchan, I

2011-01-01

We present a prototype visualisation tool, ADVISES (Adaptive Visualization for e-Science), designed to support epidemiologists and public health practitioners in exploring geo-coded datasets and generating spatial epidemiological hypotheses. The tool is designed to support creative thinking while providing the means for the user to evaluate the validity of the visualization in terms of statistical uncertainty. We present an overview of the application and the results of an evaluation exploring public health researchers' responses to maps as a new way of viewing familiar data, in particular the use of thematic maps with adjoining descriptive statistics and forest plots to support the generation and evaluation of new hypotheses. A series of qualitative evaluations involved one experienced researcher asking 21 volunteers to interact with the system to perform a series of relatively complex, realistic map-building and exploration tasks, using a 'think aloud' protocol, followed by a semi-structured interview The volunteers were academic epidemiologists and UK National Health Service analysts. All users quickly and confidently created maps, and went on to spend substantial amounts of time exploring and interacting with system, generating hypotheses about their maps. Our findings suggest that the tool is able to support creativity and statistical appreciation among public health professionals and epidemiologists building thematic maps. Software such as this, introduced appropriately, could increase the capability of existing personnel for generating public health intelligence.

Bottom-up derivation of conservative and dissipative interactions for coarse-grained molecular liquids with the conditional reversible work method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Deichmann, Gregor; Marcon, Valentina; Vegt, Nico F. A. van der, E-mail: vandervegt@csi.tu-darmstadt.de

Molecular simulations of soft matter systems have been performed in recent years using a variety of systematically coarse-grained models. With these models, structural or thermodynamic properties can be quite accurately represented while the prediction of dynamic properties remains difficult, especially for multi-component systems. In this work, we use constraint molecular dynamics simulations for calculating dissipative pair forces which are used together with conditional reversible work (CRW) conservative forces in dissipative particle dynamics (DPD) simulations. The combined CRW-DPD approach aims to extend the representability of CRW models to dynamic properties and uses a bottom-up approach. Dissipative pair forces are derived frommore » fluctuations of the direct atomistic forces between mapped groups. The conservative CRW potential is obtained from a similar series of constraint dynamics simulations and represents the reversible work performed to couple the direct atomistic interactions between the mapped atom groups. Neopentane, tetrachloromethane, cyclohexane, and n-hexane have been considered as model systems. These molecular liquids are simulated with atomistic molecular dynamics, coarse-grained molecular dynamics, and DPD. We find that the CRW-DPD models reproduce the liquid structure and diffusive dynamics of the liquid systems in reasonable agreement with the atomistic models when using single-site mapping schemes with beads containing five or six heavy atoms. For a two-site representation of n-hexane (3 carbons per bead), time scale separation can no longer be assumed and the DPD approach consequently fails to reproduce the atomistic dynamics.« less

Geographic Resources Analysis Support System (GRASS) Version 4.0 User’s Reference Manual

DTIC Science & Technology

1992-06-01

inpur-image need not be square; before processing, the X and Y dimensions of the input-image are padded with zeroes to the next highest power of two in...structures an input kowledge /control script with an appropriate combination of map layer category values (GRASS raster map layers that contain data on...F cos(x) cosine of x (x is in degrees) F exp(x) exponential function of x F exp(x,y) x to the power y F float(x) convert x to floating point F if

The crystallography of correlated disorder.

PubMed

Keen, David A; Goodwin, Andrew L

2015-05-21

Classical crystallography can determine structures as complicated as multi-component ribosomal assemblies with atomic resolution, but is inadequate for disordered systems--even those as simple as water ice--that occupy the complex middle ground between liquid-like randomness and crystalline periodic order. Correlated disorder nevertheless has clear crystallographic signatures that map to the type of disorder, irrespective of the underlying physical or chemical interactions and material involved. This mapping hints at a common language for disordered states that will help us to understand, control and exploit the disorder responsible for many interesting physical properties.

A hemicyanine based ratiometric fluorescence probe for mapping lysosomal pH during heat stroke in living cells.

PubMed

Wu, Luling; Wang, Yang; James, Tony D; Jia, Nengqin; Huang, Chusen

2018-05-29

Heat stroke is a lethal condition which can cause dysfunction in the central nervous system, multi-organ damage and even death. However, there is still limited knowledge of the detailed mechanism about the roles of lysosomes in heat stroke due to lack of effective tools. Herein, we introduce our previously developed hemicyanine with a large D-π-A structure as the key fluorophore to develop a new fluorescent probe (CPY) for ratiometric mapping of lysosomal pH changes in live cells under a heat shock stimulus.

Software Engineering Laboratory (SEL) database organization and user's guide, revision 2

NASA Technical Reports Server (NTRS)

Morusiewicz, Linda; Bristow, John

1992-01-01

The organization of the Software Engineering Laboratory (SEL) database is presented. Included are definitions and detailed descriptions of the database tables and views, the SEL data, and system support data. The mapping from the SEL and system support data to the base table is described. In addition, techniques for accessing the database through the Database Access Manager for the SEL (DAMSEL) system and via the ORACLE structured query language (SQL) are discussed.

Software Engineering Laboratory (SEL) database organization and user's guide

NASA Technical Reports Server (NTRS)

So, Maria; Heller, Gerard; Steinberg, Sandra; Spiegel, Douglas

1989-01-01

The organization of the Software Engineering Laboratory (SEL) database is presented. Included are definitions and detailed descriptions of the database tables and views, the SEL data, and system support data. The mapping from the SEL and system support data to the base tables is described. In addition, techniques for accessing the database, through the Database Access Manager for the SEL (DAMSEL) system and via the ORACLE structured query language (SQL), are discussed.

Mapping Ionic Currents and Reactivity on the Nanoscale: Electrochemical Strain Microscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kalinin, S.V.

2010-10-19

Solid-state electrochemical processes in oxides underpin a broad spectrum of energy and information storage devices, ranging from Li-ion and Li-air batteries, to solid oxide fuel cells (SOFC) to electroresistive and memristive systems. These functionalities are controlled by the bias-driven diffusive and electromigration transport of mobile ionic species, as well as intricate a set of electrochemical and defect-controlled reactions at interfaces and in bulk. Despite the wealth of device-level and atomistic studies, little is known on the mesoscopic mechanisms of ion diffusion and electronic transport on the level of grain clusters, individual grains, and extended defects. The development of the capabilitymore » for probing ion transport on the nanometer scale is a key to deciphering complex interplay between structure, functionality, and performance in these systems. Here we introduce Electrochemical Strain Microscopy, a scanning probe microscopy technique based on strong strain-bias coupling in the systems in which local ion concentrations are changed by electrical fields. The imaging capability, as well as time- and voltage spectroscopies analogous to traditional current based electrochemical characterization methods are developed. The reversible intercalation of Li and mapping electrochemical activity in LiCoO2 is demonstrated, illustrating higher Li diffusivity at non-basal planes and grain boundaries. In Si-anode device structure, the direct mapping of Li diffusion at extended defects and evolution of Li-activity with charge state is explored. The electrical field-dependence of Li mobility is studied to determine the critical bias required for the onset of electrochemical transformation, allowing reaction and diffusion processes in the battery system to be separated at each location. Finally, the applicability of ESM for probing oxygen vacancy diffusion and oxygen reduction/evolution reactions is illustrated, and the high resolution ESM maps are correlated with aberration corrected scanning transmission electron microscopy imaging. The future potential for deciphering mechanisms of electrochemical transformations on an atomically-defined single-defect level is discussed.« less

Information flow and causality as rigorous notions ab initio

NASA Astrophysics Data System (ADS)

Liang, X. San

2016-11-01

Information flow or information transfer the widely applicable general physics notion can be rigorously derived from first principles, rather than axiomatically proposed as an ansatz. Its logical association with causality is firmly rooted in the dynamical system that lies beneath. The principle of nil causality that reads, an event is not causal to another if the evolution of the latter is independent of the former, which transfer entropy analysis and Granger causality test fail to verify in many situations, turns out to be a proven theorem here. Established in this study are the information flows among the components of time-discrete mappings and time-continuous dynamical systems, both deterministic and stochastic. They have been obtained explicitly in closed form, and put to applications with the benchmark systems such as the Kaplan-Yorke map, Rössler system, baker transformation, Hénon map, and stochastic potential flow. Besides unraveling the causal relations as expected from the respective systems, some of the applications show that the information flow structure underlying a complex trajectory pattern could be tractable. For linear systems, the resulting remarkably concise formula asserts analytically that causation implies correlation, while correlation does not imply causation, providing a mathematical basis for the long-standing philosophical debate over causation versus correlation.

The 'cube' meta-model for the information system of large health sector organizations--a (platform neutral) mapping tool to integrate information system development with changing business functions and organizational development.

PubMed

Balkányi, László

2002-01-01

To develop information systems (IS) in the changing environment of the health sector, a simple but throughout model, avoiding the techno-jargon of informatics, might be useful for the top management. A platform neutral, extensible, transparent conceptual model should be established. Limitations of current methods lead to a simple, but comprehensive mapping, in the form of a three-dimensional cube. The three 'orthogonal' views are (a) organization functionality, (b) organizational structures and (c) information technology. Each of the cube-sides is described according to its nature. This approach enables to define any kind of an IS component as a certain point/layer/domain of the cube and enables also the management to label all IS components independently form any supplier(s) and/or any specific platform. The model handles changes in organization structure, business functionality and the serving info-system independently form each other. Practical application extends to (a) planning complex, new ISs, (b) guiding development of multi-vendor, multi-site ISs, (c) supporting large-scale public procurement procedures and the contracting, implementation phase by establishing a platform neutral reference, (d) keeping an exhaustive inventory of an existing large-scale system, that handles non-tangible aspects of the IS.

A special purpose silicon compiler for designing supercomputing VLSI systems

NASA Technical Reports Server (NTRS)

Venkateswaran, N.; Murugavel, P.; Kamakoti, V.; Shankarraman, M. J.; Rangarajan, S.; Mallikarjun, M.; Karthikeyan, B.; Prabhakar, T. S.; Satish, V.; Venkatasubramaniam, P. R.

1991-01-01

Design of general/special purpose supercomputing VLSI systems for numeric algorithm execution involves tackling two important aspects, namely their computational and communication complexities. Development of software tools for designing such systems itself becomes complex. Hence a novel design methodology has to be developed. For designing such complex systems a special purpose silicon compiler is needed in which: the computational and communicational structures of different numeric algorithms should be taken into account to simplify the silicon compiler design, the approach is macrocell based, and the software tools at different levels (algorithm down to the VLSI circuit layout) should get integrated. In this paper a special purpose silicon (SPS) compiler based on PACUBE macrocell VLSI arrays for designing supercomputing VLSI systems is presented. It is shown that turn-around time and silicon real estate get reduced over the silicon compilers based on PLA's, SLA's, and gate arrays. The first two silicon compiler characteristics mentioned above enable the SPS compiler to perform systolic mapping (at the macrocell level) of algorithms whose computational structures are of GIPOP (generalized inner product outer product) form. Direct systolic mapping on PLA's, SLA's, and gate arrays is very difficult as they are micro-cell based. A novel GIPOP processor is under development using this special purpose silicon compiler.

Mapping care processes within a hospital: from theory to a web-based proposal merging enterprise modelling and ISO normative principles.

PubMed

Staccini, Pascal; Joubert, Michel; Quaranta, Jean-François; Fieschi, Marius

2005-03-01

Today, the economic and regulatory environment, involving activity-based and prospective payment systems, healthcare quality and risk analysis, traceability of the acts performed and evaluation of care practices, accounts for the current interest in clinical and hospital information systems. The structured gathering of information relative to users' needs and system requirements is fundamental when installing such systems. This stage takes time and is generally misconstrued by caregivers and is of limited efficacy to analysts. We used a modelling technique designed for manufacturing processes (IDEF0/SADT). We enhanced the basic model of an activity with descriptors extracted from the Ishikawa cause-and-effect diagram (methods, men, materials, machines, and environment). We proposed an object data model of a process and its components, and programmed a web-based tool in an object-oriented environment. This tool makes it possible to extract the data dictionary of a given process from the description of its elements and to locate documents (procedures, recommendations, instructions) according to each activity or role. Aimed at structuring needs and storing information provided by directly involved teams regarding the workings of an institution (or at least part of it), the process-mapping approach has an important contribution to make in the analysis of clinical information systems.

Data Structures in Natural Computing: Databases as Weak or Strong Anticipatory Systems

NASA Astrophysics Data System (ADS)

Rossiter, B. N.; Heather, M. A.

2004-08-01

Information systems anticipate the real world. Classical databases store, organise and search collections of data of that real world but only as weak anticipatory information systems. This is because of the reductionism and normalisation needed to map the structuralism of natural data on to idealised machines with von Neumann architectures consisting of fixed instructions. Category theory developed as a formalism to explore the theoretical concept of naturality shows that methods like sketches arising from graph theory as only non-natural models of naturality cannot capture real-world structures for strong anticipatory information systems. Databases need a schema of the natural world. Natural computing databases need the schema itself to be also natural. Natural computing methods including neural computers, evolutionary automata, molecular and nanocomputing and quantum computation have the potential to be strong. At present they are mainly at the stage of weak anticipatory systems.

Mapping Foliar Traits Across Biomes Using Imaging Spectroscopy: A Synthesis

NASA Astrophysics Data System (ADS)

Townsend, P. A.; Singh, A.; Wang, Z.

2016-12-01

One of the great promises of imaging spectroscopy - also known as hyperspectral remote sensing - is the ability to map the spatial variation in foliar functional traits, such as nitrogen concentration, pigments, leaf structure, photosynthetic capacity and secondary biochemistry, that drive terrestrial ecosystem processes. A remote-sensing approach enables characterization of within- and between-biome variations that may be crucial to understanding ecosystem responses to pests, pathogens and environmental change. We provide a synthesis of the foliar traits that can be mapped from imaging spectroscopy, as well as an overview of both the major applications of trait maps derived from hyperspectral imagery and current gaps in our knowledge and capacity. Specifically, we make the case that a global imaging spectroscopy mission will provide unique and urgent measurements necessary to understand the response of agricultural and natural systems to rapid global changes. Finally, we present a quantitative framework to utilize imaging spectroscopy to characterize spatial and temporal variation in foliar traits within and between biomes. From this we can infer the dynamics of vegetation function across ecosystems, especially in transition zones and environmentally sensitive systems. Eventual launch of a global imaging spectroscopy mission will enable collection of narrowband VSWIR measurements that will help close major gaps in our understanding of biogeochemical cycles and improve representation of vegetated biomes in Earth system process models.

A methodology for eliciting, representing, and analysing stakeholder knowledge for decision making on complex socio-ecological systems: from cognitive maps to agent-based models.

PubMed

Elsawah, Sondoss; Guillaume, Joseph H A; Filatova, Tatiana; Rook, Josefine; Jakeman, Anthony J

2015-03-15

This paper aims to contribute to developing better ways for incorporating essential human elements in decision making processes for modelling of complex socio-ecological systems. It presents a step-wise methodology for integrating perceptions of stakeholders (qualitative) into formal simulation models (quantitative) with the ultimate goal of improving understanding and communication about decision making in complex socio-ecological systems. The methodology integrates cognitive mapping and agent based modelling. It cascades through a sequence of qualitative/soft and numerical methods comprising: (1) Interviews to elicit mental models; (2) Cognitive maps to represent and analyse individual and group mental models; (3) Time-sequence diagrams to chronologically structure the decision making process; (4) All-encompassing conceptual model of decision making, and (5) computational (in this case agent-based) Model. We apply the proposed methodology (labelled ICTAM) in a case study of viticulture irrigation in South Australia. Finally, we use strengths-weakness-opportunities-threats (SWOT) analysis to reflect on the methodology. Results show that the methodology leverages the use of cognitive mapping to capture the richness of decision making and mental models, and provides a combination of divergent and convergent analysis methods leading to the construction of an Agent Based Model. Copyright © 2014 Elsevier Ltd. All rights reserved.

Discrete-Time Mapping for an Impulsive Goodwin Oscillator with Three Delays

NASA Astrophysics Data System (ADS)

Churilov, Alexander N.; Medvedev, Alexander; Zhusubaliyev, Zhanybai T.

A popular biomathematics model of the Goodwin oscillator has been previously generalized to a more biologically plausible construct by introducing three time delays to portray the transport phenomena arising due to the spatial distribution of the model states. The present paper addresses a similar conversion of an impulsive version of the Goodwin oscillator that has found application in mathematical modeling, e.g. in endocrine systems with pulsatile hormone secretion. While the cascade structure of the linear continuous part pertinent to the Goodwin oscillator is preserved in the impulsive Goodwin oscillator, the static nonlinear feedback of the former is substituted with a pulse modulation mechanism thus resulting in hybrid dynamics of the closed-loop system. To facilitate the analysis of the mathematical model under investigation, a discrete mapping propagating the continuous state variables through the firing times of the impulsive feedback is derived. Due to the presence of multiple time delays in the considered model, previously developed mapping derivation approaches are not applicable here and a novel technique is proposed and applied. The mapping captures the dynamics of the original hybrid system and is instrumental in studying complex nonlinear phenomena arising in the impulsive Goodwin oscillator. A simulation example is presented to demonstrate the utility of the proposed approach in bifurcation analysis.

Structural Modeling Using "Scanning and Mapping" Technique

NASA Technical Reports Server (NTRS)

Amos, Courtney L.; Dash, Gerald S.; Shen, J. Y.; Ferguson, Frederick; Noga, Donald F. (Technical Monitor)

2000-01-01

Supported by NASA Glenn Center, we are in the process developing a structural damage diagnostic and monitoring system for rocket engines, which consists of five modules: Structural Modeling, Measurement Data Pre-Processor, Structural System Identification, Damage Detection Criterion, and Computer Visualization. The function of the system is to detect damage as it is incurred by the engine structures. The scientific principle to identify damage is to utilize the changes in the vibrational properties between the pre-damaged and post-damaged structures. The vibrational properties of the pre-damaged structure can be obtained based on an analytic computer model of the structure. Thus, as the first stage of the whole research plan, we currently focus on the first module - Structural Modeling. Three computer software packages are selected, and will be integrated for this purpose. They are PhotoModeler-Pro, AutoCAD-R14, and MSC/NASTRAN. AutoCAD is the most popular PC-CAD system currently available in the market. For our purpose, it plays like an interface to generate structural models of any particular engine parts or assembly, which is then passed to MSC/NASTRAN for extracting structural dynamic properties. Although AutoCAD is a powerful structural modeling tool, the complexity of engine components requires a further improvement in structural modeling techniques. We are working on a so-called "scanning and mapping" technique, which is a relatively new technique. The basic idea is to producing a full and accurate 3D structural model by tracing on multiple overlapping photographs taken from different angles. There is no need to input point positions, angles, distances or axes. Photographs can be taken by any types of cameras with different lenses. With the integration of such a modeling technique, the capability of structural modeling will be enhanced. The prototypes of any complex structural components will be produced by PhotoModeler first based on existing similar components, then passed to AutoCAD for modification and correction of any discrepancies seen in the Photomodeler version of the 3Dmodel. These three software packages are fully compatible. The DXF file can be used to transfer drawings among those packages. To begin this entire process, we are using a small replica of an actual engine blade as a test object. This paper introduces the accomplishment of our recent work.

Cooperative Autonomous Observation of Volcanic Environments with sUAS

NASA Astrophysics Data System (ADS)

Ravela, S.

2015-12-01

The Cooperative Autonomous Observing System Project (CAOS) at the MIT Earth Signals and Systems Group has developed methodology and systems for dynamically mapping coherent fluids such as plumes using small unmanned aircraft systems (sUAS). In the CAOS approach, two classes of sUAS, one remote the other in-situ, implement a dynamic data-driven mapping system by closing the loop between Modeling, Estimation, Sampling, Planning and Control (MESPAC). The continually gathered measurements are assimilated to produce maps/analyses which also guide the sUAS network to adaptively resample the environment. Rather than scan the volume in fixed Eulerian or Lagrangian flight plans, the adaptive nature of the sampling process enables objectives for efficiency and resilience to be incorporated. Modeling includes realtime prediction using two types of reduced models, one based on nowcasting remote observations of plume tracer using scale-cascaded alignment, and another based on dynamically-deformable EOF/POD developed for coherent structures. Ensemble-based Information-theoretic machine learning approaches are used for the highly non-linear/non-Gaussian state/parameter estimation, and for planning. Control of the sUAS is based on model reference control coupled with hierarchical PID. MESPAC is implemented in part on a SkyCandy platform, and implements an airborne mesh that provides instantaneous situational awareness and redundant communication to an operating fleet. SkyCandy is deployed on Itzamna Aero's I9X/W UAS with low-cost sensors, and is currently being used to study the Popocatepetl volcano. Results suggest that operational communities can deploy low-cost sUAS to systematically monitor whilst optimizing for efficiency/maximizing resilience. The CAOS methodology is applicable to many other environments where coherent structures are present in the background. More information can be found at caos.mit.edu.

Combining 3D structure of real video and synthetic objects

NASA Astrophysics Data System (ADS)

Kim, Man-Bae; Song, Mun-Sup; Kim, Do-Kyoon

1998-04-01

This paper presents a new approach of combining real video and synthetic objects. The purpose of this work is to use the proposed technology in the fields of advanced animation, virtual reality, games, and so forth. Computer graphics has been used in the fields previously mentioned. Recently, some applications have added real video to graphic scenes for the purpose of augmenting the realism that the computer graphics lacks in. This approach called augmented or mixed reality can produce more realistic environment that the entire use of computer graphics. Our approach differs from the virtual reality and augmented reality in the manner that computer- generated graphic objects are combined to 3D structure extracted from monocular image sequences. The extraction of the 3D structure requires the estimation of 3D depth followed by the construction of a height map. Graphic objects are then combined to the height map. The realization of our proposed approach is carried out in the following steps: (1) We derive 3D structure from test image sequences. The extraction of the 3D structure requires the estimation of depth and the construction of a height map. Due to the contents of the test sequence, the height map represents the 3D structure. (2) The height map is modeled by Delaunay triangulation or Bezier surface and each planar surface is texture-mapped. (3) Finally, graphic objects are combined to the height map. Because 3D structure of the height map is already known, Step (3) is easily manipulated. Following this procedure, we produced an animation video demonstrating the combination of the 3D structure and graphic models. Users can navigate the realistic 3D world whose associated image is rendered on the display monitor.

Sentinel lymph node detection in gynecologic malignancies by a handheld fluorescence camera

NASA Astrophysics Data System (ADS)

Hirsch, Ole; Szyc, Lukasz; Muallem, Mustafa Zelal; Ignat, Iulia; Chekerov, Radoslav; Macdonald, Rainer; Sehouli, Jalid; Braicu, Ioana; Grosenick, Dirk

2017-02-01

Near-infrared fluorescence imaging using indocyanine green (ICG) as a tracer is a promising technique for mapping the lymphatic system and for detecting sentinel lymph nodes (SLN) during cancer surgery. In our feasibility study we have investigated the application of a custom-made handheld fluorescence camera system for the detection of lymph nodes in gynecological malignancies. It comprises a low cost CCD camera with enhanced NIR sensitivity and two groups of LEDs emitting at wavelengths of 735 nm and 830 nm for interlaced recording of fluorescence and reflectance images of the tissue, respectively. With the help of our system, surgeons can observe fluorescent tissue structures overlaid onto the anatomical image on a monitor in real-time. We applied the camera system for intraoperative lymphatic mapping in 5 patients with vulvar cancer, 5 patients with ovarian cancer, 3 patients with cervical cancer, and 3 patients with endometrial cancer. ICG was injected at four loci around the primary malignant tumor during surgery. After a residence time of typically 15 min fluorescence images were taken in order to visualize the lymph nodes closest to the carcinomas. In cases with vulvar cancer about half of the lymph nodes detected by routinely performed radioactive SLN mapping have shown fluorescence in vivo as well. In the other types of carcinomas several lymph nodes could be detected by fluorescence during laparotomy. We conclude that our low cost camera system has sufficient sensitivity for lymphatic mapping during surgery.

Swath sonar mapping of Earth's submarine plate boundaries

NASA Astrophysics Data System (ADS)

Carbotte, S. M.; Ferrini, V. L.; Celnick, M.; Nitsche, F. O.; Ryan, W. B. F.

2014-12-01

The recent loss of Malaysia Airlines flight MH370 in an area of the Indian Ocean where less than 5% of the seafloor is mapped with depth sounding data (Smith and Marks, EOS 2014) highlights the striking lack of detailed knowledge of the topography of the seabed for much of the worlds' oceans. Advances in swath sonar mapping technology over the past 30 years have led to dramatic improvements in our capability to map the seabed. However, the oceans are vast and only an estimated 10% of the seafloor has been mapped with these systems. Furthermore, the available coverage is highly heterogeneous and focused within areas of national strategic priority and community scientific interest. The major plate boundaries that encircle the globe, most of which are located in the submarine environment, have been a significant focus of marine geoscience research since the advent of swath sonar mapping. While the location of these plate boundaries are well defined from satellite-derived bathymetry, significant regions remain unmapped at the high-resolutions provided by swath sonars and that are needed to study active volcanic and tectonic plate boundary processes. Within the plate interiors, some fossil plate boundary zones, major hotspot volcanoes, and other volcanic provinces have been the focus of dedicated research programs. Away from these major tectonic structures, swath mapping coverage is limited to sparse ocean transit lines which often reveal previously unknown deep-sea channels and other little studied sedimentary structures not resolvable in existing low-resolution global compilations, highlighting the value of these data even in the tectonically quiet plate interiors. Here, we give an overview of multibeam swath sonar mapping of the major plate boundaries of the globe as extracted from public archives. Significant quantities of swath sonar data acquired from deep-sea regions are in restricted-access international archives. Open access to more of these data sets would enable global comparisons of plate boundary structures and processes and could facilitate a more coordinated approach to optimizing the future acquisition of these high-value data by the global research community.

Brain maps 4.0—Structure of the rat brain: An open access atlas with global nervous system nomenclature ontology and flatmaps

PubMed Central

2018-01-01

Abstract The fourth edition (following editions in 1992, 1998, 2004) of Brain maps: structure of the rat brain is presented here as an open access internet resource for the neuroscience community. One new feature is a set of 10 hierarchical nomenclature tables that define and describe all parts of the rat nervous system within the framework of a strictly topographic system devised previously for the human nervous system. These tables constitute a global ontology for knowledge management systems dealing with neural circuitry. A second new feature is an aligned atlas of bilateral flatmaps illustrating rat nervous system development from the neural plate stage to the adult stage, where most gray matter regions, white matter tracts, ganglia, and nerves listed in the nomenclature tables are illustrated schematically. These flatmaps are convenient for future development of online applications analogous to “Google Maps” for systems neuroscience. The third new feature is a completely revised Atlas of the rat brain in spatially aligned transverse sections that can serve as a framework for 3‐D modeling. Atlas parcellation is little changed from the preceding edition, but the nomenclature for rat is now aligned with an emerging panmammalian neuroanatomical nomenclature. All figures are presented in Adobe Illustrator vector graphics format that can be manipulated, modified, and resized as desired, and freely used with a Creative Commons license. PMID:29277900

a Distributed Online 3D-LIDAR Mapping System

NASA Astrophysics Data System (ADS)

Schmiemann, J.; Harms, H.; Schattenberg, J.; Becker, M.; Batzdorfer, S.; Frerichs, L.

2017-08-01

In this paper we are presenting work done within the joint development project ANKommEn. It deals with the development of a highly automated robotic system for fast data acquisition in civil disaster scenarios. One of the main requirements is a versatile system, hence the concept embraces a machine cluster consisting of multiple fundamentally different robotic platforms. To cover a large variety of potential deployment scenarios, neither the absolute amount of participants, nor the precise individual layout of each platform shall be restricted within the conceptual design. Thus leading to a variety of special requirements, like onboard and online data processing capabilities for each individual participant and efficient data exchange structures, allowing reliable random data exchange between individual robots. We are demonstrating the functionality and performance by means of a distributed mapping system evaluated with real world data in a challenging urban and rural indoor/outdoor scenarios.

Visual analytics as a translational cognitive science.

PubMed

Fisher, Brian; Green, Tera Marie; Arias-Hernández, Richard

2011-07-01

Visual analytics is a new interdisciplinary field of study that calls for a more structured scientific approach to understanding the effects of interaction with complex graphical displays on human cognitive processes. Its primary goal is to support the design and evaluation of graphical information systems that better support cognitive processes in areas as diverse as scientific research and emergency management. The methodologies that make up this new field are as yet ill defined. This paper proposes a pathway for development of visual analytics as a translational cognitive science that bridges fundamental research in human/computer cognitive systems and design and evaluation of information systems in situ. Achieving this goal will require the development of enhanced field methods for conceptual decomposition of human/computer cognitive systems that maps onto laboratory studies, and improved methods for conducting laboratory investigations that might better map onto real-world cognitive processes in technology-rich environments. Copyright © 2011 Cognitive Science Society, Inc.

Using the small alignment index chaos indicator to characterize the vibrational dynamics of a molecular system: LiNC-LiCN.

PubMed

Benitez, P; Losada, J C; Benito, R M; Borondo, F

2015-10-01

A study of the dynamical characteristics of the phase space corresponding to the vibrations of the LiNC-LiCN molecule using an analysis based on the small alignment index (SALI) is presented. SALI is a good indicator of chaos that can easily determine whether a given trajectory is regular or chaotic regardless of the dimensionality of the system, and can also provide a wealth of dynamical information when conveniently implemented. In two-dimensional (2D) systems SALI maps are computed as 2D phase space representations, where the SALI asymptotic values are represented in color scale. We show here how these maps provide full information on the dynamical phase space structure of the LiNC-LiCN system, even quantifying numerically the volume of the different zones of chaos and regularity as a function of the molecule excitation energy.

Multidisciplinary exploration of the Tendaho Graben geothermal fields

NASA Astrophysics Data System (ADS)

Armadillo, Egidio; Rizzello, Daniele; Verdoya, Massimo; Pasqua, Claudio; Marini, Luigi; Meqbel, Naser; Stimac, Jim; Kebede, Solomon; Mengiste, Andarge; Hailegiorgis, Getenesch; Abera, Fitsum; Mengesha, Kebede

2017-04-01

The NW-SE trending Tendaho Graben is the major extensional feature of the Afar, Ethiopia. Rifting and volcanic activity within the graben occurred mostly between 1.8 and 0.6 Ma, but extended to at least 0.2 Ma. Very recent (0.22- 0.03 Ma) activity is focused along the southern part of the younger and active Manda Hararo Rift, which is included in the north-western part of the graben. Extension gave rise to about 1600 m of vertical displacement (verified by drilling) of the basaltic Afar Stratoid sequence, over a crust with a mean thickness of about 23 km. The infill of graben, overlying the Stratoids, consists of volcanic and sedimentary deposits that have been drilled by six exploratory wells. Within the graben, two main geothermal fields have been explored by intensive geological, geochemical and geophysical surveys over an area that approximately covers a square sector of 40x40 km. Both new and existing data sets have been integrated. The Dubti-Ayrobera system is located along the central axis of the graben. Available data, acquired in the last three decades, comprise more than two thousands gravity and magnetic stations, 229 magnetotelluric stations and structural-geological and geochemical observations. The Alalobeda system is located along the SW flank of the graben, at about 25 km from the Dubti-Ayrobera system and has been very recently studied by means of gravimetric (300 stations), magnetotelluric and TDEM (140 stations) geological and geochemical surveys. The new residual magnetic anomaly map has been used to map the younger normal polarity basalt distribution and infer the location of the unknown main rift axis. The bedrock surface resulting by the 3D inversion of the new residual Bouguer anomaly enlightens the main normal faults hindered by sediments and the secondary structures represented by horsts and grabens. The three-dimensional resistivity models allow mapping the sedimentary infill of the graben, fracture zones in the Afar Stradoids bedrock and the dome-shape structure of the clay cap layer. The 2D and 3D gravimetric, magnetic and resistivity models have been integrated with the structural, geological and geochemical outcomings in order to get an updated conceptual model of the geothermal systems.

Shallow Geothermal Admissibility Maps: a Methodology to Achieve a Sustainable Development of Shallow Geothermal Energy with Regards to Groundwater Resources

NASA Astrophysics Data System (ADS)

Bréthaut, D.; Parriaux, A.; Tacher, L.

2009-04-01

Implantation and use of shallow geothermal systems may have environmental impacts. Traditionally, risks are divided into 2 categories: direct and indirect. Direct risks are linked with the leakage of the circulating fluid (usually water with anti-freeze) of ground source heat pumps into the underground which may be a source of contamination. Indirect risks are linked with the borehole itself and the operation of the systems which can modify the groundwater flow, change groundwater temperature and chemistry, create bypasses from the surfaces to the aquifers or between two aquifers. Groundwater source heat pumps (GWSHP) may provoke indirect risks, while ground source heat pumps (GSHP) may provoke both direct and indirect risks. To minimize those environmental risks, the implantation of shallow geothermal systems must be regulated. In 2007, more than 7000 GSHP have been installed in Switzerland, which represents 1.5 Mio drilled meters. In the canton of Vaud, each shallow geothermal project has to be approved by the Department of the Environment. Approximately 1500 demands have been treated during 2007, about 15 times more than in 1990. Mapping shallow geothermal systems implantation restrictions due to environmental constrains permits: 1) to optimize the management and planning of the systems, 2) to minimize their impact on groundwater resources and 3) to facilitate administrative procedures for treating implantation demands. Such maps are called admissibility maps. Here, a methodology to elaborate them is presented and tested. Interactions between shallow geothermal energy and groundwater resources have been investigated. Admissibility criteria are proposed and structured into a flow chart which provides a decision making tool for shallow geothermal systems implantation. This approach has been applied to three areas of West Switzerland ranging from 2 to 6 km2. For each area, a geological investigation has been realized and complementary territorial information (e.g. map of contaminated areas) was gathered in order to produce the admissibility maps. For one area, a more detailed study has been performed and a complete 3D geological model has been constructed using an in-house modelling software called GeoShape. The model was then imported into a geographical information system which has been used to realize the admissibility map. Resulting maps were judged to be consistent and satisfying. In a second part of the project, this method will be applied at a larger scale. An admissibility map of the canton of Vaud (3200 km2) will be created. Considering the fast growth of the number of implanted GSHP and GWSHP throughout the world, it is clear that admissibility maps will play a major role in developing shallow geothermal energy as an environmentally friendly and sustainable resource.

Tag-mediated cooperation with non-deterministic genotype-phenotype mapping

NASA Astrophysics Data System (ADS)

Zhang, Hong; Chen, Shu

2016-01-01

Tag-mediated cooperation provides a helpful framework for resolving evolutionary social dilemmas. However, most of the previous studies have not taken into account genotype-phenotype distinction in tags, which may play an important role in the process of evolution. To take this into consideration, we introduce non-deterministic genotype-phenotype mapping into a tag-based model with spatial prisoner's dilemma. By our definition, the similarity between genotypic tags does not directly imply the similarity between phenotypic tags. We find that the non-deterministic mapping from genotypic tag to phenotypic tag has non-trivial effects on tag-mediated cooperation. Although we observe that high levels of cooperation can be established under a wide variety of conditions especially when the decisiveness is moderate, the uncertainty in the determination of phenotypic tags may have a detrimental effect on the tag mechanism by disturbing the homophilic interaction structure which can explain the promotion of cooperation in tag systems. Furthermore, the non-deterministic mapping may undermine the robustness of the tag mechanism with respect to various factors such as the structure of the tag space and the tag flexibility. This observation warns us about the danger of applying the classical tag-based models to the analysis of empirical phenomena if genotype-phenotype distinction is significant in real world. Non-deterministic genotype-phenotype mapping thus provides a new perspective to the understanding of tag-mediated cooperation.

One perspective on spatial variability in geologic mapping

USGS Publications Warehouse

Markewich, H.W.; Cooper, S.C.

1991-01-01

This paper discusses some of the differences between geologic mapping and soil mapping, and how the resultant maps are interpreted. The role of spatial variability in geologic mapping is addressed only indirectly because in geologic mapping there have been few attempts at quantification of spatial differences. This is largely because geologic maps deal with temporal as well as spatial variability and consider time, age, and origin, as well as composition and geometry. Both soil scientists and geologists use spatial variability to delineate mappable units; however, the classification systems from which these mappable units are defined differ greatly. Mappable soil units are derived from systematic, well-defined, highly structured sets of taxonomic criteria; whereas mappable geologic units are based on a more arbitrary heirarchy of categories that integrate many features without strict values or definitions. Soil taxonomy is a sorting tool used to reduce heterogeneity between soil units. Thus at the series level, soils in any one series are relatively homogeneous because their range of properties is small and well-defined. Soil maps show the distribution of soils on the land surface. Within a map area, soils, which are often less than 2 m thick, show a direct correlation to topography and to active surface processes as well as to parent material.

Biological basis for space-variant sensor design I: parameters of monkey and human spatial vision

NASA Astrophysics Data System (ADS)

Rojer, Alan S.; Schwartz, Eric L.

1991-02-01

Biological sensor design has long provided inspiration for sensor design in machine vision. However relatively little attention has been paid to the actual design parameters provided by biological systems as opposed to the general nature of biological vision architectures. In the present paper we will provide a review of current knowledge of primate spatial vision design parameters and will present recent experimental and modeling work from our lab which demonstrates that a numerical conformal mapping which is a refinement of our previous complex logarithmic model provides the best current summary of this feature of the primate visual system. In this paper we will review recent work from our laboratory which has characterized some of the spatial architectures of the primate visual system. In particular we will review experimental and modeling studies which indicate that: . The global spatial architecture of primate visual cortex is well summarized by a numerical conformal mapping whose simplest analytic approximation is the complex logarithm function . The columnar sub-structure of primate visual cortex can be well summarized by a model based on a band-pass filtered white noise. We will also refer to ongoing work in our lab which demonstrates that: . The joint columnar/map structure of primate visual cortex can be modeled and summarized in terms of a new algorithm the ''''proto-column'''' algorithm. This work provides a reference-point for current engineering approaches to novel architectures for

Unmanned aerial vehicle acquisition of three-dimensional digital image correlation measurements for structural health monitoring of bridges

NASA Astrophysics Data System (ADS)

Reagan, Daniel; Sabato, Alessandro; Niezrecki, Christopher

2017-04-01

Civil engineering structures such as bridges, buildings, and tunnels continue to be used despite aging and deterioration well past their design life. In 2013, the American Society of Civil Engineers (ASCE) rated the state of the U.S. bridges as mediocre, despite the $12.8 billion USD annually invested. Traditional inspection and monitoring techniques may produce inconsistent results, are labor intensive and too time-consuming to be considered effective for large-scale monitoring. Therefore, new structural health monitoring systems must be developed that are automated, highly accurate, minimally invasive, and cost effective. Three-dimensional (3D) digital image correlation (DIC) systems possess the capability of extracting full-field strain, displacement, and geometry profiles. Furthermore, as this measurement technique is implemented within an Unmanned Aerial Vehicle (UAV) the capability to expedite the optical-based measurement process is increased as well as the infrastructure downtime being reduced. These resulting integrity maps of the structure of interest can be easily interpreted by trained personal. Within this paper, the feasibility of performing DIC measurements using a pair of cameras installed on a UAV is shown. Performance is validated with in-flight measurements. Also, full-field displacement monitoring, 3D measurement stitching, and 3D point-tracking techniques are employed in conjunction with 3D mapping and data management software. The results of these experiments show that the combination of autonomous flight with 3D DIC and other non-contact measurement systems provides a highly valuable and effective civil inspection platform.

Semi-automatic mapping of cultural heritage from airborne laser scanning using deep learning

NASA Astrophysics Data System (ADS)

Due Trier, Øivind; Salberg, Arnt-Børre; Holger Pilø, Lars; Tonning, Christer; Marius Johansen, Hans; Aarsten, Dagrun

2016-04-01

This paper proposes to use deep learning to improve semi-automatic mapping of cultural heritage from airborne laser scanning (ALS) data. Automatic detection methods, based on traditional pattern recognition, have been applied in a number of cultural heritage mapping projects in Norway for the past five years. Automatic detection of pits and heaps have been combined with visual interpretation of the ALS data for the mapping of deer hunting systems, iron production sites, grave mounds and charcoal kilns. However, the performance of the automatic detection methods varies substantially between ALS datasets. For the mapping of deer hunting systems on flat gravel and sand sediment deposits, the automatic detection results were almost perfect. However, some false detections appeared in the terrain outside of the sediment deposits. These could be explained by other pit-like landscape features, like parts of river courses, spaces between boulders, and modern terrain modifications. However, these were easy to spot during visual interpretation, and the number of missed individual pitfall traps was still low. For the mapping of grave mounds, the automatic method produced a large number of false detections, reducing the usefulness of the semi-automatic approach. The mound structure is a very common natural terrain feature, and the grave mounds are less distinct in shape than the pitfall traps. Still, applying automatic mound detection on an entire municipality did lead to a new discovery of an Iron Age grave field with more than 15 individual mounds. Automatic mound detection also proved to be useful for a detailed re-mapping of Norway's largest Iron Age grave yard, which contains almost 1000 individual graves. Combined pit and mound detection has been applied to the mapping of more than 1000 charcoal kilns that were used by an iron work 350-200 years ago. The majority of charcoal kilns were indirectly detected as either pits on the circumference, a central mound, or both. However, kilns with a flat interior and a shallow ditch along the circumference were often missed by the automatic detection method. The successfulness of automatic detection seems to depend on two factors: (1) the density of ALS ground hits on the cultural heritage structures being sought, and (2) to what extent these structures stand out from natural terrain structures. The first factor may, to some extent, be improved by using a higher number of ALS pulses per square meter. The second factor is difficult to change, and also highlights another challenge: how to make a general automatic method that is applicable in all types of terrain within a country. The mixed experience with traditional pattern recognition for semi-automatic mapping of cultural heritage led us to consider deep learning as an alternative approach. The main principle is that a general feature detector has been trained on a large image database. The feature detector is then tailored to a specific task by using a modest number of images of true and false examples of the features being sought. Results of using deep learning are compared with previous results using traditional pattern recognition.

Systematic methods for defining coarse-grained maps in large biomolecules.

PubMed

Zhang, Zhiyong

2015-01-01

Large biomolecules are involved in many important biological processes. It would be difficult to use large-scale atomistic molecular dynamics (MD) simulations to study the functional motions of these systems because of the computational expense. Therefore various coarse-grained (CG) approaches have attracted rapidly growing interest, which enable simulations of large biomolecules over longer effective timescales than all-atom MD simulations. The first issue in CG modeling is to construct CG maps from atomic structures. In this chapter, we review the recent development of a novel and systematic method for constructing CG representations of arbitrarily complex biomolecules, in order to preserve large-scale and functionally relevant essential dynamics (ED) at the CG level. In this ED-CG scheme, the essential dynamics can be characterized by principal component analysis (PCA) on a structural ensemble, or elastic network model (ENM) of a single atomic structure. Validation and applications of the method cover various biological systems, such as multi-domain proteins, protein complexes, and even biomolecular machines. The results demonstrate that the ED-CG method may serve as a very useful tool for identifying functional dynamics of large biomolecules at the CG level.

Testing the FLI in the region of the Pallas asteroid family

NASA Astrophysics Data System (ADS)

Todorović, N.; Novaković, B.

2015-08-01

Computation of the fast Lyapunov indicator (FLI) is one of the most efficient numerical ways to characterize dynamical nature of motion and to detect phase-space structures in a large variety of dynamical models. Despite its effectiveness, FLI was mainly used for symplectic maps or simple Hamiltonians, but it has never been used to study dynamics of asteroids to a greater extent. This research shows that FLI could also be successfully applied to real (Solar system) dynamics. For this purpose, we focus on the main belt region where the Pallas asteroid family is located. By using the full Solar system model, different sets of initial conditions and different integration times, we managed not only to visualize a large multiplet of resonances located in the region, but also their structures, chaotic boundaries, stability islands therein and the positions of their mutual interaction. In the end, we have identified some of the most dominant resonances present in the region and established a link between these resonances and chaotic areas visible in our maps. We have illustrated that FLI once again has shown its efficiency to detect dynamical structures in the main belt, e.g. in the Pallas asteroid family, with a surprisingly good clarity.

Simplified molecular input line entry system-based: QSAR modelling for MAP kinase-interacting protein kinase (MNK1).

PubMed

Begum, S; Achary, P Ganga Raju

2015-01-01

Quantitative structure-activity relationship (QSAR) models were built for the prediction of inhibition (pIC50, i.e. negative logarithm of the 50% effective concentration) of MAP kinase-interacting protein kinase (MNK1) by 43 potent inhibitors. The pIC50 values were modelled with five random splits, with the representations of the molecular structures by simplified molecular input line entry system (SMILES). QSAR model building was performed by the Monte Carlo optimisation using three methods: classic scheme; balance of correlations; and balance correlation with ideal slopes. The robustness of these models were checked by parameters as rm(2), r(*)m(2), [Formula: see text] and randomisation technique. The best QSAR model based on single optimal descriptors was applied to study in vitro structure-activity relationships of 6-(4-(2-(piperidin-1-yl) ethoxy) phenyl)-3-(pyridin-4-yl) pyrazolo [1,5-a] pyrimidine derivatives as a screening tool for the development of novel potent MNK1 inhibitors. The effects of alkyl group, -OH, -NO2, F, Cl, Br, I, etc. on the IC50 values towards the inhibition of MNK1 were also reported.

Assessment of dosimetric impact of system specific geometric distortion in an MRI only based radiotherapy workflow for prostate

NASA Astrophysics Data System (ADS)

Gustafsson, C.; Nordström, F.; Persson, E.; Brynolfsson, J.; Olsson, L. E.

2017-04-01

Dosimetric errors in a magnetic resonance imaging (MRI) only radiotherapy workflow may be caused by system specific geometric distortion from MRI. The aim of this study was to evaluate the impact on planned dose distribution and delineated structures for prostate patients, originating from this distortion. A method was developed, in which computer tomography (CT) images were distorted using the MRI distortion field. The displacement map for an optimized MRI treatment planning sequence was measured using a dedicated phantom in a 3 T MRI system. To simulate the distortion aspects of a synthetic CT (electron density derived from MR images), the displacement map was applied to CT images, referred to as distorted CT images. A volumetric modulated arc prostate treatment plan was applied to the original CT and the distorted CT, creating a reference and a distorted CT dose distribution. By applying the inverse of the displacement map to the distorted CT dose distribution, a dose distribution in the same geometry as the original CT images was created. For 10 prostate cancer patients, the dose difference between the reference dose distribution and inverse distorted CT dose distribution was analyzed in isodose level bins. The mean magnitude of the geometric distortion was 1.97 mm for the radial distance of 200-250 mm from isocenter. The mean percentage dose differences for all isodose level bins, were  ⩽0.02% and the radiotherapy structure mean volume deviations were  <0.2%. The method developed can quantify the dosimetric effects of MRI system specific distortion in a prostate MRI only radiotherapy workflow, separated from dosimetric effects originating from synthetic CT generation. No clinically relevant dose difference or structure deformation was found when 3D distortion correction and high acquisition bandwidth was used. The method could be used for any MRI sequence together with any anatomy of interest.

Assessment of dosimetric impact of system specific geometric distortion in an MRI only based radiotherapy workflow for prostate.

PubMed

Gustafsson, C; Nordström, F; Persson, E; Brynolfsson, J; Olsson, L E

2017-04-21

Dosimetric errors in a magnetic resonance imaging (MRI) only radiotherapy workflow may be caused by system specific geometric distortion from MRI. The aim of this study was to evaluate the impact on planned dose distribution and delineated structures for prostate patients, originating from this distortion. A method was developed, in which computer tomography (CT) images were distorted using the MRI distortion field. The displacement map for an optimized MRI treatment planning sequence was measured using a dedicated phantom in a 3 T MRI system. To simulate the distortion aspects of a synthetic CT (electron density derived from MR images), the displacement map was applied to CT images, referred to as distorted CT images. A volumetric modulated arc prostate treatment plan was applied to the original CT and the distorted CT, creating a reference and a distorted CT dose distribution. By applying the inverse of the displacement map to the distorted CT dose distribution, a dose distribution in the same geometry as the original CT images was created. For 10 prostate cancer patients, the dose difference between the reference dose distribution and inverse distorted CT dose distribution was analyzed in isodose level bins. The mean magnitude of the geometric distortion was 1.97 mm for the radial distance of 200-250 mm from isocenter. The mean percentage dose differences for all isodose level bins, were  ⩽0.02% and the radiotherapy structure mean volume deviations were  <0.2%. The method developed can quantify the dosimetric effects of MRI system specific distortion in a prostate MRI only radiotherapy workflow, separated from dosimetric effects originating from synthetic CT generation. No clinically relevant dose difference or structure deformation was found when 3D distortion correction and high acquisition bandwidth was used. The method could be used for any MRI sequence together with any anatomy of interest.

Geologic map of the Devore 7.5' quadrangle, San Bernardino County, California

USGS Publications Warehouse

Morton, Douglas M.; Matti, Jonathan C.

2001-01-01

This Open-File Report contains a digital geologic map database of the Devore 7.5' quadrangle, San Bernardino County, California, that includes: 1. ARC/INFO (Environmental Systems Research Institute) version 7.2.1 coverages of the various components of the geologic map 2. A PostScript (.ps) file to plot the geologic map on a topographic base, containing a Correlation of Map Units diagram, a Description of Map Units, an index map, and a regional structure map 3. Portable Document Format (.pdf) files of: a. This Readme; includes an Appendix, containing metadata details found in devre_met.txt b. The same graphic as plotted in 2 above. (Test plots from this .pdf do not produce 1:24,000-scale maps. Adobe Acrobat page-size settings control map scale.) The Correlation of Map Units and Description of Map Units are in the editorial format of USGS Miscellaneous Investigations Series maps (I-maps) but have not been edited to comply with I-map standards. Within the geologic-map data package, map units are identified by such standard geologic-map criteria as formation name, age, and lithology. Even though this is an author-prepared report, every attempt has been made to closely adhere to the stratigraphic nomenclature of the U.S. Geological Survey. Descriptions of units can be obtained by viewing or plotting the .pdf file (3b above) or plotting the postscript file (2 above). If roads in some areas, especially forest roads that parallel topographic contours, do not show well on plots of the geologic map, we recommend use of the USGS Devore 7.5’ topographic quadrangle in conjunction with the geologic map.

Determinants of woody cover in African savannas

USGS Publications Warehouse

Sankaran, M.; Hanan, N.P.; Scholes, Robert J.; Ratnam, J.; Augustine, D.J.; Cade, B.S.; Gignoux, J.; Higgins, S.I.; Le, Roux X.; Ludwig, F.; Ardo, J.; Banyikwa, F.; Bronn, A.; Bucini, G.; Caylor, K.K.; Coughenour, M.B.; Diouf, A.; Ekaya, W.; Feral, C.J.; February, E.C.; Frost, P.G.H.; Hiernaux, P.; Hrabar, H.; Metzger, K.L.; Prins, H.H.T.; Ringrose, S.; Sea, W.; Tews, J.; Worden, J.; Zambatis, N.

2005-01-01

Savannas are globally important ecosystems of great significance to human economies. In these biomes, which are characterized by the co-dominance of trees and grasses, woody cover is a chief determinant of ecosystem properties 1-3. The availability of resources (water, nutrients) and disturbance regimes (fire, herbivory) are thought to be important in regulating woody cover1,2,4,5, but perceptions differ on which of these are the primary drivers of savanna structure. Here we show, using data from 854 sites across Africa, that maximum woody cover in savannas receiving a mean annual precipitation (MAP) of less than ???650 mm is constrained by, and increases linearly with, MAP. These arid and semi-arid savannas may be considered 'stable' systems in which water constrains woody cover and permits grasses to coexist, while fire, herbivory and soil properties interact to reduce woody cover below the MAP-controlled upper bound. Above a MAP of ???650 mm, savannas are 'unstable' systems in which MAP is sufficient for woody canopy closure, and disturbances (fire, herbivory) are required for the coexistence of trees and grass. These results provide insights into the nature of African savannas and suggest that future changes in precipitation 6 may considerably affect their distribution and dynamics. ?? 2005 Nature Publishing Group.

VeLoc: Finding Your Car in Indoor Parking Structures.

PubMed

Gao, Ruipeng; He, Fangpu; Li, Teng

2018-05-02

While WiFi-based indoor localization is attractive, there are many indoor places without WiFi coverage with a strong demand for localization capability. This paper describes a system and associated algorithms to address the indoor vehicle localization problem without the installation of additional infrastructure. In this paper, we propose VeLoc, which utilizes the sensor data of smartphones in the vehicle together with the floor map of the parking structure to track the vehicle in real time. VeLoc simultaneously harnesses constraints imposed by the map and environment sensing. All these cues are codified into a novel augmented particle filtering framework to estimate the position of the vehicle. Experimental results show that VeLoc performs well when even the initial position and the initial heading direction of the vehicle are completely unknown.

Dark Matter and Extragalactic Gas Clouds in the NGC 4532/DDO 137 System

NASA Technical Reports Server (NTRS)

Hoffman, G. L.; Lu, N. Y.; Salpeter, E. E.; Connell, B. M.

1998-01-01

H I synthesis mapping of NGC 4532 and DDO 137, a pair of Sm galaxies on the edge of the Virgo cluster, is used to determine rotation curves for each of the galaxies and to resolve the structure and kinematics of three extragalactic H I clouds embedded in an extended envelope of diffuse HI discovered in earlier Arecibo studies of the system.

Data Model for Multi Hazard Risk Assessment Spatial Support Decision System

NASA Astrophysics Data System (ADS)

Andrejchenko, Vera; Bakker, Wim; van Westen, Cees

2014-05-01

The goal of the CHANGES Spatial Decision Support System is to support end-users in making decisions related to risk reduction measures for areas at risk from multiple hydro-meteorological hazards. The crucial parts in the design of the system are the user requirements, the data model, the data storage and management, and the relationships between the objects in the system. The implementation of the data model is carried out entirely with an open source database management system with a spatial extension. The web application is implemented using open source geospatial technologies with PostGIS as the database, Python for scripting, and Geoserver and javascript libraries for visualization and the client-side user-interface. The model can handle information from different study areas (currently, study areas from France, Romania, Italia and Poland are considered). Furthermore, the data model handles information about administrative units, projects accessible by different types of users, user-defined hazard types (floods, snow avalanches, debris flows, etc.), hazard intensity maps of different return periods, spatial probability maps, elements at risk maps (buildings, land parcels, linear features etc.), economic and population vulnerability information dependent on the hazard type and the type of the element at risk, in the form of vulnerability curves. The system has an inbuilt database of vulnerability curves, but users can also add their own ones. Included in the model is the management of a combination of different scenarios (e.g. related to climate change, land use change or population change) and alternatives (possible risk-reduction measures), as well as data-structures for saving the calculated economic or population loss or exposure per element at risk, aggregation of the loss and exposure using the administrative unit maps, and finally, producing the risk maps. The risk data can be used for cost-benefit analysis (CBA) and multi-criteria evaluation (SMCE). The data model includes data-structures for CBA and SMCE. The model is at the stage where risk and cost-benefit calculations can be stored but the remaining part is currently under development. Multi-criteria information, user management and the relation of these with the rest of the model is our next step. Having a carefully designed data model plays a crucial role in the development of the whole system for rapid development, keeping the data consistent, and in the end, support the end-user in making good decisions in risk-reduction measures related to multiple natural hazards. This work is part of the EU FP7 Marie Curie ITN "CHANGES"project (www.changes-itn.edu)

Longitudinal structure of the equatorial ionosphere: Time evolution of the four-peaked EIA structure

NASA Astrophysics Data System (ADS)

Lin, C. H.; Hsiao, C. C.; Liu, J. Y.; Liu, C. H.

2007-12-01

Longitudinal structure of the equatorial ionosphere during the 24 h local time period is observed by the FORMOSAT-3/COSMIC (F3/C) satellite constellation. By binning the F3/C radio occultation observations during September and October 2006, global ionospheric total electron content (TEC) maps at a constant local time map (local time TEC map, referred as LT map) can be obtained to monitor the development and subsidence of the four-peaked longitudinal structure of the equatorial ionosphere. From LT maps, the four-peaked structure starts to develop at 0800-1000 LT and becomes most prominent at 1200-1600 LT. The longitudinal structure starts to subside after 2200-2400 LT and becomes indiscernible after 0400-0600 LT. In addition to TEC, ionospheric peak altitude also shows a four-peaked longitudinal structure with variation very similar to TEC during daytime. The four-peaked structure of the ionospheric peak altitude is indiscernible at night. With global local time maps of ionospheric TEC and peak altitude, we compare temporal variations of the longitudinal structure with variations of E × B drift from the empirical model. Our results indicate that the observations are consistent with the hypothesis that the four-peaked longitudinal structure is caused by the equatorial plasma fountain modulated by the E3 nonmigrating tide. Additionally, the four maximum regions show a tendency of moving eastward with propagation velocity of several 10 s m/s.

The multiscale coarse-graining method. XI. Accurate interactions based on the centers of charge of coarse-grained sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cao, Zhen; Voth, Gregory A., E-mail: gavoth@uchicago.edu

It is essential to be able to systematically construct coarse-grained (CG) models that can efficiently and accurately reproduce key properties of higher-resolution models such as all-atom. To fulfill this goal, a mapping operator is needed to transform the higher-resolution configuration to a CG configuration. Certain mapping operators, however, may lose information related to the underlying electrostatic properties. In this paper, a new mapping operator based on the centers of charge of CG sites is proposed to address this issue. Four example systems are chosen to demonstrate this concept. Within the multiscale coarse-graining framework, CG models that use this mapping operatormore » are found to better reproduce the structural correlations of atomistic models. The present work also demonstrates the flexibility of the mapping operator and the robustness of the force matching method. For instance, important functional groups can be isolated and emphasized in the CG model.« less

Merging IceSAT GLAS and Terra MODIS Data in Order to Derive Forest Type Specific Tree Heights in the Central Siberian Boreal Forest

NASA Technical Reports Server (NTRS)

Ranson, K. Jon; Sun, Guoqing; Kimes, Daniel; Kovacs, Katalin; Kharuk, Viatscheslav

2006-01-01

Mapping of boreal forest's type, biomass, and other structural parameters are critical for understanding of the boreal forest's significance in the carbon cycle, its response to and impact on global climate change. We believe the nature of the forest structure information available from MISR and GLAS can be used to help identify forest type, age class, and estimate above ground biomass levels beyond that now possible with MODIS alone. The ground measurements will be used to develop relationships between remote sensing observables and forest characteristics and provide new information for understanding forest changes with respect to environmental change. Lidar is a laser altimeter that determines the distance from the instrument to the physical surface by measuring the time elapsed between the pulse emission and the reflected return. Other studies have shown that the returned signal may identify multiple returns originating from trees, building and other objects and permits the calculation of their height. Studies using field data have shown that lidar data can provide estimates of structural parameters such as biomass, stand volume and leaf area index and allows remarkable differentiation between primary and secondary forest. NASA's IceSAT Geoscience Laser Altimeter System (GLAS) was launched in January 2003 and collected data during February and September of that year. This study used data acquired over our study sites in central Siberia to examine the GLAS signal as a source of forest height and other structural characteristics. The purpose of our Siberia project is to improve forest cover maps and produce above-ground biomass maps of the boreal forest in Northern Eurasia from MODIS by incorporating structural information inherent in the Terra MISR and ICESAT Geoscience Laser Altimeter System (GLAS) instruments. A number of forest cover classifications exist for the boreal forest. We believe the limiting factor in these products is the lack of structural information, particularly in the vertical dimension. The emphasis of this project is to improve upon satellite maps of boreal forest structure parameters (i.e. height and biomass) using temporal, multi-angle, and vertical profile information of GLAS data. The existing and near future lidar data is useful for demonstrating these techniques and pursuing current estimates. Future lidar missions may be several years in the future, so we will work other new data sets that may aide in biomass estimates such as ALOS PALSAR We will continue this work to produce an accurate map of current above ground forest phytomass/carbon storage possible for the study area. We plan to develop, test, and integrate remote sensing methods for extracting forest canopy structure measures. We are compiling our field measurements and will compare them with the remote sensing methods where possible. We also be able to produce a realistic error bound on the remotely sensed carbon estimates.

Reflecting on the efficacy of cognitive mapping for decision-making in intellectual disability care: a case study.

PubMed

Duryan, Meri; Nikolik, Dragan; van Merode, Godefridus; Curfs, Leopold M G

2015-01-01

The central aspect of this study is a set of reflections on the efficacy of soft operational research techniques in understanding the dynamics of a complex system such as intellectual disability (ID) care providers. Organizations providing services to ID patients are complex and have many interacting stakeholders with often different and competing interests. Understanding the causes for failures in complex systems is crucial for appreciating the multiple perspectives of the key stakeholders of the system. Knowing the factors that adversely affect delivery of a patient-centred care by ID provider organizations offers the potential for identifying more effective resource-allocation solutions. The authors suggest cognitive mapping as a starting point for system dynamics modelling of optimal resource-allocation projects in ID care. The application of the method is illustrated via a case study in one of the ID care providers in the Netherlands. The paper discusses some of the practical implications of applying problem-structuring methods that support gathering feedback from vulnerable service users and front-line workers. The authors concluded that cognitive mapping technique can assist the management of healthcare organizations in strategic decision-making. Copyright © 2013 John Wiley & Sons, Ltd.

System identification of smart structures using a wavelet neuro-fuzzy model

NASA Astrophysics Data System (ADS)

Mitchell, Ryan; Kim, Yeesock; El-Korchi, Tahar

2012-11-01

This paper proposes a complex model of smart structures equipped with magnetorheological (MR) dampers. Nonlinear behavior of the structure-MR damper systems is represented by the use of a wavelet-based adaptive neuro-fuzzy inference system (WANFIS). The WANFIS is developed through the integration of wavelet transforms, artificial neural networks, and fuzzy logic theory. To evaluate the effectiveness of the WANFIS model, a three-story building employing an MR damper under a variety of natural hazards is investigated. An artificial earthquake is used for training the input-output mapping of the WANFIS model. The artificial earthquake is generated such that the characteristics of a variety of real recorded earthquakes are included. It is demonstrated that this new WANFIS approach is effective in modeling nonlinear behavior of the structure-MR damper system subjected to a variety of disturbances while resulting in shorter training times in comparison with an adaptive neuro-fuzzy inference system (ANFIS) model. Comparison with high fidelity data proves the viability of the proposed approach in a structural health monitoring setting, and it is validated using known earthquake signals such as El-Centro, Kobe, Northridge, and Hachinohe.

Geomatics for Mapping of Groundwater Potential Zones in Northern Part of the United Arab Emiratis - Sharjah City

NASA Astrophysics Data System (ADS)

Al-Ruzouq, R.; Shanableh, A.; Merabtene, T.

2015-04-01

In United Arab Emirates (UAE) domestic water consumption has increased rapidly over the last decade. The increased demand for high-quality water, create an urgent need to evaluate the groundwater production of aquifers. The development of a reasonable model for groundwater potential is therefore crucial for future systematic developments, efficient management, and sustainable use of groundwater resources. The objective of this study is to map the groundwater potential zones in northern part of UAE and assess the contributing factors for exploration of potential groundwater resources. Remote sensing data and geographic information system will be used to locate potential zones for groundwater. Various maps (i.e., base, soil, geological, Hydro-geological, Geomorphologic Map, structural, drainage, slope, land use/land cover and average annual rainfall map) will be prepared based on geospatial techniques. The groundwater availability of the basin will qualitatively classified into different classes based on its hydro-geo-morphological conditions. The land use/land cover map will be also prepared for the different seasons using a digital classification technique with a ground truth based on field investigation.

Geologic map of the Basque-Cantabrian Basin and a new tectonic interpretation of the Basque Arc

NASA Astrophysics Data System (ADS)

Ábalos, B.

2016-11-01

A new printable 1/200.000 bedrock geological map of the onshore Basque-Cantabrian Basin is presented, aimed to contribute to future geologic developments in the central segment of the Pyrenean-Cantabrian Alpine orogenic system. It is accompanied in separate appendixes by a historic report on the precedent geological maps and by a compilation above 350 bibliographic citations of maps and academic reports (usually overlooked or ignored) that are central to this contribution. Structural scrutiny of the map permits to propose a new tectonic interpretation of the Basque Arc, implementing previously published partial reconstructions. It is presented as a printable 1/400.000 tectonic map. The Basque Arc consists of various thrust slices that can expose at the surface basement rocks (Palaeozoic to Lower Triassic) and their sedimentary cover (uppermost Triassic to Tertiary), from which they are detached by intervening (Upper Triassic) evaporites and associated rocks. The slice-bounding thrusts are in most cases reactivated normal faults active during Meso-Cenozoic sedimentation that can be readily related to basement discontinuities generated during the Hercynian orogeny.

SSMap: a new UniProt-PDB mapping resource for the curation of structural-related information in the UniProt/Swiss-Prot Knowledgebase.

PubMed

David, Fabrice P A; Yip, Yum L

2008-09-23

Sequences and structures provide valuable complementary information on protein features and functions. However, it is not always straightforward for users to gather information concurrently from the sequence and structure levels. The UniProt knowledgebase (UniProtKB) strives to help users on this undertaking by providing complete cross-references to Protein Data Bank (PDB) as well as coherent feature annotation using available structural information. In this study, SSMap - a new UniProt-PDB residue-residue level mapping - was generated. The primary objective of this mapping is not only to facilitate the two tasks mentioned above, but also to palliate a number of shortcomings of existent mappings. SSMap is the first isoform sequence-specific mapping resource and is up-to-date for UniProtKB annotation tasks. The method employed by SSMap differs from the other mapping resources in that it stresses on the correct reconstruction of the PDB sequence from structures, and on the correct attribution of a UniProtKB entry to each PDB chain by using a series of post-processing steps. SSMap was compared to other existing mapping resources in terms of the correctness of the attribution of PDB chains to UniProtKB entries, and of the quality of the pairwise alignments supporting the residue-residue mapping. It was found that SSMap shared about 80% of the mappings with other mapping sources. New and alternative mappings proposed by SSMap were mostly good as assessed by manual verification of data subsets. As for local pairwise alignments, it was shown that major discrepancies (both in terms of alignment lengths and boundaries), when present, were often due to differences in methodologies used for the mappings. SSMap provides an independent, good quality UniProt-PDB mapping. The systematic comparison conducted in this study allows the further identification of general problems in UniProt-PDB mappings so that both the coverage and the quality of the mappings can be systematically improved for the benefit of the scientific community. SSMap mapping is currently used to provide PDB cross-references in UniProtKB.