Cell adhesion on nanotextured slippery superhydrophobic substrates.

PubMed

Di Mundo, Rosa; Nardulli, Marina; Milella, Antonella; Favia, Pietro; d'Agostino, Riccardo; Gristina, Roberto

2011-04-19

In this work, the response of Saos2 cells to polymeric surfaces with different roughness/density of nanometric dots produced by a tailored plasma-etching process has been studied. Topographical features have been evaluated by atomic force microscopy, while wetting behavior, in terms of water-surface adhesion energy, has been evaluated by measurements of drop sliding angle. Saos2 cytocompatibility has been investigated by scanning electron microscopy, fluorescent microscopy, and optical microscopy. The similarity in outer chemical composition has allowed isolation of the impact of the topographical features on cellular behavior. The results indicate that Saos2 cells respond differently to surfaces with different nanoscale topographical features, clearly showing a certain inhibition in cell adhesion when the nanoscale is particularly small. This effect appears to be attenuated in surfaces with relatively bigger nanofeatures, though these express a more pronounced slippery/dry wetting character. © 2011 American Chemical Society

The effect of grooves in amorphous substrates on the orientation of metal deposits. I - Carbon substrates

NASA Technical Reports Server (NTRS)

Anton, R.; Poppa, H.; Flanders, D. C.

1982-01-01

The graphoepitaxial alignment of vapor-deposited discrete metal crystallites is investigated in the nucleation and growth stages and during annealing by in situ UHV/TEM techniques. Various stages of nucleation, growth and coalescence of vapor deposits of Au, Ag, Pb, Sn, and Bi on amorphous, topographically structured C substrates are analyzed by advanced dark-field techniques to detect preferred local orientations. It is found that the topography-induced orientation of metal crystallites depends strongly on their mobility and their respective tendency to develop pronounced crystallographic shapes. Lowering of the average surface free energies and increasing the crystallographic surface energy anisotropies cause generally improved graphoepitaxial alignments.

Attachment dynamics of Photosystem I on nano-tailored surfaces for photovoltaic applications

NASA Astrophysics Data System (ADS)

Mukherjee, Dibyendu; Bruce, Barry D.; Khomami, Bamin

2010-03-01

Photosystem I (PSI), a biological photodiode, is a supra-molecular protein complex that charge separates upon exposure to light. Effective use of photo-electrochemical activities of PSI for hybrid photovoltaic (PV) device fabrications requires optimal encapsulation of these proteins onto organic/ inorganic substrates. Our results indicate that various experimental parameters alter the surface attachment dynamics of PSI deposited from colloidal aqueous buffer suspensions onto OH-terminated alkanethiolate/Au SAM substrates, thereby resulting in complex structural arrangements which affect the electron transfer and capture pathway of PSI. We present surface topographical, specific adsorption and polarization fluorescence characterizations of PSI/Au SAM substrates to elucidate the protein-surface interaction kinetics as well as the directional attachment dynamics of PSI. Our final goal is to enable site-specific homogeneous attachment of directionally aligned PSI onto chemically tailored nano-patterned substrates.

Deep-Reaching Hydrodynamic Flow Confinement: Micrometer-Scale Liquid Localization for Open Substrates With Topographical Variations.

PubMed

Oskooei, Ali; Kaigala, Govind V

2017-06-01

We present a method for nonintrusive localization and reagent delivery on immersed biological samples with topographical variation on the order of hundreds of micrometers. Our technique, which we refer to as the deep-reaching hydrodynamic flow confinement (DR-HFC), is simple and passive: it relies on a deep-reaching hydrodynamic confinement delivered through a simple microfluidic probe design to perform localized microscale alterations on substrates as deep as 600 μm. Designed to scan centimeter-scale areas of biological substrates, our method passively prevents sample intrusion by maintaining a large gap between the probe and the substrate. The gap prevents collision of the probe and the substrate and reduces the shear stress experienced by the sample. We present two probe designs: linear and annular DR-HFC. Both designs comprise a reagent-injection aperture and aspiration apertures that serve to confine the reagent. We identify the design parameters affecting reagent localization and depth by DR-HFC and study their individual influence on the operation of DR-HFC numerically. Using DR-HFC, we demonstrate localized binding of antihuman immunoglobulin G (IgG) onto an activated substrate at various depths from 50 to 600 μm. DR-HFC provides a readily implementable approach for noninvasive processing of biological samples applicable to the next generation of diagnostic and bioanalytical devices.

A miniaturized bioreactor system for the evaluation of cell interaction with designed substrates in perfusion culture.

PubMed

Sun, T; Donoghue, P S; Higginson, J R; Gadegaard, N; Barnett, S C; Riehle, M O

2012-12-01

In tissue engineering, chemical and topographical cues are normally developed using static cell cultures but then applied directly to tissue cultures in three dimensions (3D) and under perfusion. As human cells are very sensitive to changes in the culture environment, it is essential to evaluate the performance of any such cues in a perfused environment before they are applied to tissue engineering. Thus, the aim of this research was to bridge the gap between static and perfusion cultures by addressing the effect of perfusion on cell cultures within 3D scaffolds. For this we developed a scaled-down bioreactor system, which allows evaluation of the effectiveness of various chemical and topographical cues incorporated into our previously developed tubular ε-polycaprolactone scaffold under perfused conditions. Investigation of two exemplary cell types (fibroblasts and cortical astrocytes) using the miniaturized bioreactor indicated that: (a) quick and firm cell adhesion in the 3D scaffold was critical for cell survival in perfusion culture compared with static culture; thus, cell-seeding procedures for static cultures might not be applicable, therefore it was necessary to re-evaluate cell attachment on different surfaces under perfused conditions before a 3D scaffold was applied for tissue cultures; (b) continuous medium perfusion adversely influenced cell spread and survival, which could be balanced by intermittent perfusion; (c) micro-grooves still maintained their influences on cell alignment under perfused conditions, while medium perfusion demonstrated additional influence on fibroblast alignment but not on astrocyte alignment on grooved substrates. This research demonstrated that the mini-bioreactor system is crucial for the development of functional scaffolds with suitable chemical and topographical cues by bridging the gap between static culture and perfusion culture. Copyright © 2011 John Wiley & Sons, Ltd.

Fabrication of biomimetic nanomaterials and their effect on cell behavior

NASA Astrophysics Data System (ADS)

Porri, Teresa Jane

Cells in vivo respond to an intricate combination of chemical and mechanical signals. The corneal epithelium, a structure which prevents the admission of bacteria and undesirable molecules into the eye, grows on a basement membrane which presents both nanoscale topographic and adhesive chemical signals. An effective approach to biomaterials design takes advantage of the synergistic effects of the multiple cellular inputs which are available to engineer cell-substrate interactions. We have previously demonstrated the effects of nanoscale topography on a variety of corneal epithelial cell behaviors. To gain a better understanding of cell-level control in vivo, we employ a systems-level approach which looks at the effect of nanoscale topography in conjunction with a biomimetic surface chemistry. First, we discuss a novel method of fabricating nanoscale topography through templated electroless deposition of gold into PVP-coated polycarbonate membranes. This technique creates nanowires of gold with an uniform outer diameter that is dependent upon the size of the pores in the membrane used, and a nanowire length that is dependent upon the extent of etching into the polymer membrane. The gold nanowires can be modified with self-assembled monolayers (SAMs) of alkanethiols. Using these substrates, we study the effect of topographic length scale and surface chemistry on cells attached to a discontinuous nanoscale topography, and find a transition in cellular behavior at a length scale (between 600 and 2000 nm inter-wire spacing) that is commensurate with the transition length scale seen on surfaces presenting continuous grooves and ridges. Secondly, we study the effect of non-fouling peptide-modified SAMs on cellular behavior. We examine the effect of co-presented RGD and AG73 peptides and show that cell spreading is a function of the relative ratios of RGD and AG73 present on the surface. Finally, we explore the combinatorial effects of biologically relevant chemistry with anisotropic nanoscale topography with dimensions that vary from the micron to the nanoscale. We show that integrin binding, syndecan binding, and topographic length scale each independently influence epithelial cell response to nanoscale features, lending a high degree of control over cell morphologic responses.

Photosystem I assembly on chemically tailored SAM/ Au substrates for bio-hybrid device fabrication

NASA Astrophysics Data System (ADS)

Mukherjee, Dibyendu; Khomami, Bamin

2011-03-01

Photosystem I (PS I), a supra-molecular protein complex and a biological photodiode responsible for driving natural photosynthesis mechanism, charge separates upon exposure to light. Effective use of the photo-electrochemical activities of PS I for future bio-hybrid electronic devices requires controlled attachment of these proteins onto organic/ inorganic substrates. Our results indicate that various experimental parameters alter the surface topography of PS I deposited from colloidal aqueous buffer suspensions onto OH-terminated alkanethiolate SAM /Au substrates, thereby resulting in complex columnar structures that affect the electron capture pathway of PS I. Specifically, solution phase characterizations indicate that specific detergents used for PS I stabilization in buffer solutions drive the unique colloidal chemistry to tune protein-protein interactions and prevent aggregation, thereby allowing us to tailor the morphology of surface immobilized PS I. We present surface topographical, adsorption, and electrochemical characterizations of PSI /SAM/Au substrates to elucidate protein-surface attachment dynamics and its effect on the photo-activated electronic activities of surface immobilized PS I. Sustainable Energy Education and Research Center (SEERC).

Principle of topography-directed inkjet printing for functional micro-tracks in flexible substrates

NASA Astrophysics Data System (ADS)

Keum, Chang-Min; Lee, In-Ho; Park, Hea-Lim; Kim, Chiwoo; Lüssem, Björn; Choi, Jong Sun; Lee, Sin-Doo

2017-06-01

We present a general principle of topography-directed (TD) inkjet printing for functional micro-tracks embedded in a flexible elastomer substrate. The essential features of the TD inkjet printing in a micro-structured substrate with periodic grooves and ridges are described in terms of the topographic parameters for the transformation from a single droplet to a filament or an edge-disjoint pattern of ink in the groove. Silver ink, being widely used for producing conductive wires by conventional inkjet printing, is utilized as a testbed in our study. The underlying mechanisms for the spreading and drying processes of ink drops under the topographic compartment can be understood in a two-dimensional parameter space of the aspect ratio of the groove and the contact angle of ink on the substrate. The wetting morphologies of ink droplets are described in an analytical model where the Laplace pressure and the mean curvature at the vapor/ink interface are taken into account. The first principle of the TD inkjet printing would be applicable for constructing a variety of functional micro-tracks with high pattern fidelity from different classes of solutions such as conducting polymers, organic semiconductors, and colloidal nanoparticles.

Characterisation of cell-substrate interactions between Schwann cells and three-dimensional fibrin hydrogels containing orientated nanofibre topographical cues.

PubMed

Hodde, Dorothee; Gerardo-Nava, José; Wöhlk, Vanessa; Weinandy, Stefan; Jockenhövel, Stefan; Kriebel, Andreas; Altinova, Haktan; Steinbusch, Harry W M; Möller, Martin; Weis, Joachim; Mey, Jörg; Brook, Gary A

2016-02-01

The generation of complex three-dimensional bioengineered scaffolds that are capable of mimicking the molecular and topographical cues of the extracellular matrix found in native tissues is a field of expanding research. The systematic development of such scaffolds requires the characterisation of cell behaviour in response to the individual components of the scaffold. In the present investigation, we studied cell-substrate interactions between purified populations of Schwann cells and three-dimensional fibrin hydrogel scaffolds, in the presence or absence of multiple layers of highly orientated electrospun polycaprolactone nanofibres. Embedded Schwann cells remained viable within the fibrin hydrogel for up to 7 days (the longest time studied); however, cell behaviour in the hydrogel was somewhat different to that observed on the two-dimensional fibrin substrate: Schwann cells failed to proliferate in the fibrin hydrogel, whereas cell numbers increased steadily on the two-dimensional fibrin substrate. Schwann cells within the fibrin hydrogel developed complex process branching patterns, but, when presented with orientated nanofibres, showed a strong tendency to redistribute themselves onto the nanofibres, where they extended long processes that followed the longitudinal orientation of the nanofibres. The process length along nanofibre-containing fibrin hydrogel reached near-maximal levels (for the present experimental conditions) as early as 1 day after culturing. The ability of this three-dimensional, extracellular matrix-mimicking scaffold to support Schwann cell survival and provide topographical cues for rapid process extension suggest that it may be an appropriate device design for the bridging of experimental lesions of the peripheral nervous system. © 2015 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.

Decoupling indirect topographic cross-talk in band excitation piezoresponse force microscopy imaging and spectroscopy

DOE PAGES

Mazet, Lucie; Jesse, Stephen; Niu, Gang; ...

2016-06-20

Here, all scanning probe microscopies are subjected to topographic cross-talk, meaning the topography-related contrast in functional images. Here, we investigate the signatures of indirect topographic cross-talk in piezoresponse force microscopy (PFM) imaging and spectroscopy and its decoupling using band excitation (BE) method in ferroelectric BaTiO 3 deposited on the Si substrates with free standing nanopillars of diameter 50 nm. Comparison between the single-frequency PFM and BE-PFM results shows that the measured signal can be significantly distorted by topography-induced shifts in the contact resonance frequency and cantilever transfer function. However, with proper correction, such shifts do not affect PFM imaging andmore » hysteresis loop measurements. This suggests the necessity of an advanced approach, such as BE-PFM, for detection of intrinsic sample piezoresponse on the topographically non-uniform surfaces.« less

Photothermal inactivation of bacteria on plasmonic nanostructures

NASA Astrophysics Data System (ADS)

Santos, Greggy M.; Ibañez de Santi Ferrara, Felipe; Zhao, Fusheng; Rodrigues, Debora F.; Shih, Wei-Chuan

2016-03-01

Hospital-acquired bacterial infections are frequently associated with the pathogenic biofilms on surfaces of devices and instruments used in medical procedures. The utilization of thermal plasmonic agents is an innovative approach for sterilizing hospital equipment and for in vivo therapeutic treatment of bacterial infection. A photothermal inactivation technique via array of nanoporous gold disks (NPGDs) has been developed by irradiating near infrared (NIR) light onto deposited bacterial cells (Escherichia coli, Bacillus subtilis, Exiguobacterium AT1B) on the surface of metal nanostructure. The physical and photothermal properties of the NPGD substrate were investigated using topographical scanning electron microscopy (SEM) and thermographic infrared imaging. Bacterial viability studies on NPGD substrates irradiated with and without NIR light were evaluated using a fluorescence-based two-component stain assay. The results show that the heat generated from the NPGD substrate promotes high cell death counts (~100%) at short exposure durations (<25 s) even for thermally-resistant bacterial strains. The photothermal effects on NPGD substrate can lead to point-of-care applications.

Dynamics and linear stability of thermocapillary spreading films on homogeneous and micropatterned surfaces

NASA Astrophysics Data System (ADS)

Davis, Jeffrey Michael

The recent focus on microfluidic devices has generated substantial interest in small-scale transport phenomena. Because the surface to volume ratio scales inversely with the characteristic length scale, surface forces dominate in microscale systems. In particular, these forces can be manipulated to regulate the motion of thin liquid films. The dynamics and stability of thermocapillary spreading films are theoretically investigated in this dissertation for flow on homogeneous and chemically or topographically patterned substrates. Because the governing equations for spreading films driven by other forces are analogous, the approach and results are valid for general lubrication flows. Experiments have shown that films spreading on homogeneous substrates can undergo a flow transition from a uniform front at the advancing solid-liquid-vapor contact line to an array of parallel rivulets. This instability is investigated via a non-modal, transient analysis because the relevant linearized disturbance operators for spatially inhomogeneous thin films are nonnormal. Stability results for three different contact line models are compared. This investigation of thermocapillary driven spreading is also pursued in the context of characterizing a novel, open-architecture microfluidic device based on flow confinement to completely wetting microstripes through chemical micropatterning of the substrate. The resulting lateral curvature of the fluid significantly influences the dynamics of the liquid. Applied to the dip coating of these patterned substrates, hydrodynamic scaling arguments are used to derive a replacement for the classical Landau-Levich result for homogeneous substrates. Thermocapillary flow along wetting microstripes is then characterized. The lateral curvature modifies the expected spreading velocity and film profile and also suppresses the capillary ridge and instability observed at the advancing contact line on homogeneous surfaces. In addition, a lubrication-based model is derived to quantify the significant effects of lateral film curvature and fluid confinement on the transverse diffusive broadening in two microstreams merging at a ⋎ -junction. Finally, the analysis is extended to lubrication flow over chemically uniform but topographically patterned substrates. A transient analysis is employed to determine the evolution of disturbances to the capillary ridges induced by the substrate topography.

Scalable cell alignment on optical media substrates.

PubMed

Anene-Nzelu, Chukwuemeka G; Choudhury, Deepak; Li, Huipeng; Fraiszudeen, Azmall; Peh, Kah-Yim; Toh, Yi-Chin; Ng, Sum Huan; Leo, Hwa Liang; Yu, Hanry

2013-07-01

Cell alignment by underlying topographical cues has been shown to affect important biological processes such as differentiation and functional maturation in vitro. However, the routine use of cell culture substrates with micro- or nano-topographies, such as grooves, is currently hampered by the high cost and specialized facilities required to produce these substrates. Here we present cost-effective commercially available optical media as substrates for aligning cells in culture. These optical media, including CD-R, DVD-R and optical grating, allow different cell types to attach and grow well on them. The physical dimension of the grooves in these optical media allowed cells to be aligned in confluent cell culture with maximal cell-cell interaction and these cell alignment affect the morphology and differentiation of cardiac (H9C2), skeletal muscle (C2C12) and neuronal (PC12) cell lines. The optical media is amenable to various chemical modifications with fibronectin, laminin and gelatin for culturing different cell types. These low-cost commercially available optical media can serve as scalable substrates for research or drug safety screening applications in industry scales. Copyright © 2013 Elsevier Ltd. All rights reserved.

Preliminary Analysis of AIS Spectral Data Acquired from Semi-arid Shrub Communities in the Owens Valley, California

NASA Technical Reports Server (NTRS)

Ustin, S. L.; Rock, B. N.

1985-01-01

Spectral characteristics of semic-arid plant communities using 128 channel airborne imaging spectrometer (AIS) data acquired on October 30, 1984. Both field and AIS spectra of vegetation were relatively featureless and differed from substrate spectra primarily in albedo. Unvegetated sand dunes were examined to assess spectral variation resulting from topographic irregularity. Although shrub cover as low as 10% could be detected on relatively flat surfaces, such differences were obscured in more heterogeneous terrain. Sagebrush-covered fans which had been scarred by fire were studied to determine the effect of changes in plant density on reflectance. Despite noise in the atmospherically corrected spectra, these provide better resolution of differences in plant density than spectra which are solar-corrected only. A high negative correlation was found between reflectance and plant cover in areas which had uniform substrates and vegetation types. A lower correlation was found where vegetation and substrates were more diverse.

Spatial recognition test: A novel cognition task for assessing topographical memory in mice.

PubMed

Havolli, Enes; Hill, Mark Dw; Godley, Annie; Goetghebeur, Pascal Jd

2017-06-01

Dysfunction in topographical memory is a core feature of several neurological disorders. There is a large unmet medical need to address learning and memory deficits as a whole in central nervous system disease. There are considerable efforts to identify pro-cognitive compounds but current methods are either lengthy or labour intensive. Our test used a two chamber apparatus and is based on the preference of rodents to explore novel environments. It was used firstly to assess topographical memory in mice at different retention intervals (RI) and secondly to investigate the effect of three drugs reported to be beneficial for cognitive decline associated with Alzheimer's disease, namely: donepezil, memantine and levetiracetam. Animals show good memory performance at all RIs tested under four hours. At the four-hour RI, animals show a significantly poorer memory performance which can be rescued using donepezil, memantine and levetiracetam. Using this test we established and validated a spatial recognition paradigm to address topographical memory in mice by showing a decremental time-induced forgetting response and reversing this decrease in performance using pharmacological tools. The spatial recognition test differs from more commonly used visuospatial laboratory tests in both throughput capability and potentially neuroanatomical substrate. This test has the potential to be used to assess cognitive performance in transgenic animals, disease models and to screen putative cognitive enhancers or depressors.

Directed self assembly of block copolymers using chemical patterns with sidewall guiding lines, backfilled with random copolymer brushes.

PubMed

Pandav, Gunja; Durand, William J; Ellison, Christopher J; Willson, C Grant; Ganesan, Venkat

2015-12-21

Recently, alignment of block copolymer domains has been achieved using a topographically patterned substrate with a sidewall preferential to one of the blocks. This strategy has been suggested as an option to overcome the patterning resolution challenges facing chemoepitaxy strategies, which utilize chemical stripes with a width of about half the period of block copolymer to orient the equilibrium morphologies. In this work, single chain in mean field simulation methodology was used to study the self assembly of symmetric block copolymers on topographically patterned substrates with sidewall interactions. Random copolymer brushes grafted to the background region (space between patterns) were modeled explicitly. The effects of changes in pattern width, film thicknesses and strength of sidewall interaction on the resulting morphologies were examined and the conditions which led to perpendicular morphologies required for lithographic applications were identified. A number of density multiplication schemes were studied in order to gauge the efficiency with which the sidewall pattern can guide the self assembly of block copolymers. The results indicate that such a patterning technique can potentially utilize pattern widths of the order of one-two times the period of block copolymer and still be able to guide ordering of the block copolymer domains up to 8X density multiplication.

Complex, multi-scale small intestinal topography replicated in cellular growth substrates fabricated via chemical vapor deposition of Parylene C.

PubMed

Koppes, Abigail N; Kamath, Megha; Pfluger, Courtney A; Burkey, Daniel D; Dokmeci, Mehmet; Wang, Lin; Carrier, Rebecca L

2016-08-22

Native small intestine possesses distinct multi-scale structures (e.g., crypts, villi) not included in traditional 2D intestinal culture models for drug delivery and regenerative medicine. The known impact of structure on cell function motivates exploration of the influence of intestinal topography on the phenotype of cultured epithelial cells, but the irregular, macro- to submicron-scale features of native intestine are challenging to precisely replicate in cellular growth substrates. Herein, we utilized chemical vapor deposition of Parylene C on decellularized porcine small intestine to create polymeric intestinal replicas containing biomimetic irregular, multi-scale structures. These replicas were used as molds for polydimethylsiloxane (PDMS) growth substrates with macro to submicron intestinal topographical features. Resultant PDMS replicas exhibit multiscale resolution including macro- to micro-scale folds, crypt and villus structures, and submicron-scale features of the underlying basement membrane. After 10 d of human epithelial colorectal cell culture on PDMS substrates, the inclusion of biomimetic topographical features enhanced alkaline phosphatase expression 2.3-fold compared to flat controls, suggesting biomimetic topography is important in induced epithelial differentiation. This work presents a facile, inexpensive method for precisely replicating complex hierarchal features of native tissue, towards a new model for regenerative medicine and drug delivery for intestinal disorders and diseases.

Ordered to isotropic morphology transition in pattern-directed dewetting of polymer thin films on substrates with different feature heights.

PubMed

Roy, Sudeshna; Mukherjee, Rabibrata

2012-10-24

Controlled dewetting of a thin polymer film on a topographically patterned substrate is an interesting approach for aligning isotropic dewetted structures. In this article, we investigate the influence of substrate feature height (H(S)) on the dewetting pathway and final pattern morphology by studying the dewetting of polystyrene (PS) thin films on grating substrates with identical periodicity (λ(P) = 1.5 μm), but H(S) varying between 10 nm and 120 nm. We identify four distinct categories of final dewetted morphology, with different extent of ordering: (1) array of aligned droplets (H(S) ≈ 120 nm); (2) aligned undulating ribbons (H(S) ≈ 70-100 nm); (3) multilength scale structures with coexisting large droplets uncorrelated to the substrate and smaller droplets/ribbons aligned along the stripes (H(S) ≈ 40-60 nm); and (4) large droplets completely uncorrelated to the substrate (H(S) < 25 nm). The distinct morphologies across the categories are attributed to two major factors: (a) whether the as-cast film is continuous (H(S)≤ 80 nm) or discontinuous (H(S)≥ 100 nm) and (b) in case of a continuous film, whether the film ruptures along each substrate stripe (H(S)≥ 70 nm) or with nucleation of random holes that are not correlated to the substrate features (H(S)≤ 60 nm). While the ranges of H(S) values indicated in the parentheses are valid for PS films with an equivalent thickness (h(E)) ≈ 50.3 nm on a flat substrate, a change in h(E) merely alters the cut-off values of H(S), as the final dewetted morphologies and transition across categories remain generically unaltered. We finally show that the structures obtained by dewetting on different H(S) substrates exhibits different levels of hydrophobicity because of combined spatial variation of chemical and topographic contrast along the surface. Thus, the work reported in this article can find potential application in fabricating surfaces with controlled wettability.

Effects of surface topography on SERS response: Correlating nanoscopy with spectroscopy

NASA Astrophysics Data System (ADS)

Das, Sumit Kumar; Ghosh, Manash; Chowdhury, Joydeep

2018-05-01

This paper reports for the first time the hidden correlation between the topographical features of the bilayer Langmuir-Blodgett (LB) film substrates of stearic acid (SA) incubated in Au@Ag nanocolloids over various dipping times (DTs) with their corresponding SERS responses. The topographies of the as prepared substrates are investigated from the statistical considerations in terms of lateral correlation length, interface width, Hurst and Lyapnov exponents. The real space of the substrates are mapped directly from the FESEM and AFM images of the bilayer LB film of SA immersed in Au@Ag nanocolloids over various DTs ranging between 6 and 72 h. The SERS spectra of the Rhodamine 6G molecules adsorbed on the as prepared substrates have been reported. The statistical parameters of the substrates that exhibit maximum SERS efficacy have been suggested. The far field distributions in presence and in absence of Raman dipole together with spatial distribution of the near field from the hottest spot of the as prepared substrate have also been reported. To our knowledge, this is the first report that links nanoscopy with SERS spectroscopy from statistical considerations and is expected to open a new window towards the fabrication of more efficient and reproducible SERS active substrates in future endeavours.

Terrestrial Ecosystems - Topographic Moisture Potential of the Conterminous United States

USGS Publications Warehouse

Cress, Jill J.; Sayre, Roger G.; Comer, Patrick; Warner, Harumi

2009-01-01

As part of an effort to map terrestrial ecosystems, the U.S. Geological Survey has generated topographic moisture potential classes to be used in creating maps depicting standardized, terrestrial ecosystem models for the conterminous United States, using an ecosystems classification developed by NatureServe. A biophysical stratification approach, developed for South America and now being implemented globally, was used to model the ecosystem distributions. Substrate moisture regimes strongly influence the differentiation and distribution of terrestrial ecosystems, and therefore topographic moisture potential is one of the key input layers in this biophysical stratification. The method used to produce these topographic moisture potential classes was based on the derivation of ground moisture potential using a combination of computed topographic characteristics (CTI, slope, and aspect) and mapped National Wetland Inventory (NWI) boundaries. This method does not use climate or soil attributes to calculate relative topographic moisture potential since these characteristics are incorporated into the ecosystem model though other input layers. All of the topographic data used for this assessment were derived from the USGS 30-meter National Elevation Dataset (NED ) including the National Compound Topographic Index (CTI). The CTI index is a topographically derived measure of slope for a raster cell and the contributing area from upstream raster cells, and thus expresses potential for water flow to a point. In other words CTI data are 'a quantification of the position of a site in the local landscape', where the lowest values indicate ridges and the highest values indicate stream channels, lakes and ponds. These CTI values were compared to independent estimates of water accumulation by obtaining geospatial data from a number of sample locations representing two types of NWI boundaries: freshwater emergent wetlands and freshwater forested/shrub wetlands. Where these shorelines (the interface between the NWI wetlands and adjacent land) occurred, the CTI values were extracted and a histogram of their statistical distributions was calculated. Based on an evaluation of these histograms, CTI thresholds were developed to separate periodically saturated or flooded land, mesic uplands (moderately moist), and uplands. After the range of CTI values for these three different substrate moisture regimes was determined, the CTI values were grouped into three initial topographic moisture potential classes. As a final step in the generation of this national data layer, the uplands classification was subdivided into either very dry uplands or dry uplands. Very dry uplands were defined as uplands with relatively steep, south-facing slopes, and identification of this class was based on the slope and aspect datasets derived from the NED. The remaining uplands that did not meet these additional criteria were simply re-classified as dry uplands. The final National Topographic Moisture Potential dataset for the conterminous United States contains four classes: periodically saturated or flooded land (CTI = 18.5), mesic uplands (12 = 24 degrees and 91 degrees =< Aspect =< 314 degrees). This map shows a smoothed and generalized image of the four topographic moisture potential classes. Additional information about this map and any of the data developed for the ecosystems modeling of the conterminous United States is available online at http://rmgsc.cr.usgs.gov/ecosystems/.

Surface topography during neural stem cell differentiation regulates cell migration and cell morphology.

PubMed

Czeisler, Catherine; Short, Aaron; Nelson, Tyler; Gygli, Patrick; Ortiz, Cristina; Catacutan, Fay Patsy; Stocker, Ben; Cronin, James; Lannutti, John; Winter, Jessica; Otero, José Javier

2016-12-01

We sought to determine the contribution of scaffold topography to the migration and morphology of neural stem cells by mimicking anatomical features of scaffolds found in vivo. We mimicked two types of central nervous system scaffolds encountered by neural stem cells during development in vitro by constructing different diameter electrospun polycaprolactone (PCL) fiber mats, a substrate that we have shown to be topographically similar to brain scaffolds. We compared the effects of large fibers (made to mimic blood vessel topography) with those of small-diameter fibers (made to mimic radial glial process topography) on the migration and differentiation of neural stem cells. Neural stem cells showed differential migratory and morphological reactions with laminin in different topographical contexts. We demonstrate, for the first time, that neural stem cell biological responses to laminin are dependent on topographical context. Large-fiber topography without laminin prevented cell migration, which was partially reversed by treatment with rock inhibitor. Cell morphology complexity assayed by fractal dimension was inhibited in nocodazole- and cytochalasin-D-treated neural precursor cells in large-fiber topography, but was not changed in small-fiber topography with these inhibitors. These data indicate that cell morphology has different requirements on cytoskeletal proteins dependent on the topographical environment encountered by the cell. We propose that the physical structure of distinct scaffolds induces unique signaling cascades that regulate migration and morphology in embryonic neural precursor cells. J. Comp. Neurol. 524:3485-3502, 2016. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Interactions with nanoscale topography: adhesion quantification and signal transduction in cells of osteogenic and multipotent lineage.

PubMed

Biggs, Manus J P; Richards, R Geoff; Gadegaard, Nikolaj; McMurray, Rebecca J; Affrossman, Stanley; Wilkinson, Chris D W; Oreffo, Richard O C; Dalby, Mathew J

2009-10-01

Polymeric medical devices widely used in orthopedic surgery play key roles in fracture fixation and orthopedic implant design. Topographical modification and surface micro-roughness of these devices regulate cellular adhesion, a process fundamental in the initiation of osteoinduction and osteogenesis. Advances in fabrication techniques have evolved the field of surface modification; in particular, nanotechnology has allowed the development of nanoscale substrates for the investigation into cell-nanofeature interactions. In this study human osteoblasts (HOBs) were cultured on ordered nanoscale pits and random nano "craters" and "islands". Adhesion subtypes were quantified by immunofluorescent microscopy and cell-substrate interactions investigated via immuno-scanning electron microscopy. To investigate the effects of these substrates on cellular function 1.7 k microarray analysis was used to establish gene profiles of enriched STRO-1+ progenitor cell populations cultured on these nanotopographies. Nanotopographies affected the formation of adhesions on experimental substrates. Adhesion formation was prominent on planar control substrates and reduced on nanocrater and nanoisland topographies; nanopits, however, were shown to inhibit directly the formation of large adhesions. STRO-1+ progenitor cells cultured on experimental substrates revealed significant changes in genetic expression. This study implicates nanotopographical modification as a significant modulator of osteoblast adhesion and cellular function in mesenchymal populations.

Combined Effects of Substrate Topography and Stiffness on Endothelial Cytokine and Chemokine Secretion

PubMed Central

Lee, Justin H.; Park, Soojin; Mun, Kevin; Boo, Yong Chool; Kim, Deok-Ho

2016-01-01

Endothelial physiology is regulated not only by humoral factors but also by mechanical factors such as fluid shear stress and the underlying cellular matrix microenvironment. The purpose of the present study was to examine the effects of matrix topographical cues on the endothelial secretion of cytokines/chemokines in vitro. Human endothelial cells were cultured on nanopatterned polymeric substrates with different ratios of ridge to groove widths (1:1, 1:2, and 1:5) and with different stiffnesses (6.7 MPa and 2.5 GPa) in the presence and absence of 1.0 ng/mL TNF-α. The levels of cytokines/chemokines secreted into the conditioned media were analyzed with a multiplexed bead-based sandwich immunoassay. Of the nano-patterns tested, the 1:1 and 1:2 type-patterns were found to induce the greatest degree of endothelial cell elongation and directional alignment. The 1:2 type nanopatterns lowered the secretion of inflammatory cytokines such as IL-1β, IL-3 and MCP-1, compared to unpatterned substrates. Additionally, of the two polymers tested, it was found that the stiffer substrate resulted in significant decreases in the secretion of IL-3 and MCP-1. These results suggest that substrates with specific extracellular nanotopographical cues or stiffnesses may provide anti-atherogenic effects like those seen with laminar shear stresses by suppressing the endothelial secretion of cytokines and chemokines involved in vascular inflammation and remodeling. PMID:25658848

Scalable topographies to support proliferation and Oct4 expression by human induced pluripotent stem cells

PubMed Central

Reimer, Andreas; Vasilevich, Aliaksei; Hulshof, Frits; Viswanathan, Priyalakshmi; van Blitterswijk, Clemens A.; de Boer, Jan; Watt, Fiona M.

2016-01-01

It is well established that topographical features modulate cell behaviour, including cell morphology, proliferation and differentiation. To define the effects of topography on human induced pluripotent stem cells (iPSC), we plated cells on a topographical library containing over 1000 different features in medium lacking animal products (xeno-free). Using high content imaging, we determined the effect of each topography on cell proliferation and expression of the pluripotency marker Oct4 24 h after seeding. Features that maintained Oct4 expression also supported proliferation and cell-cell adhesion at 24 h, and by 4 days colonies of Oct4-positive, Sox2-positive cells had formed. Computational analysis revealed that small feature size was the most important determinant of pluripotency, followed by high wave number and high feature density. Using this information we correctly predicted whether any given topography within our library would support the pluripotent state at 24 h. This approach not only facilitates the design of substrates for optimal human iPSC expansion, but also, potentially, identification of topographies with other desirable characteristics, such as promoting differentiation. PMID:26757610

Scalable topographies to support proliferation and Oct4 expression by human induced pluripotent stem cells.

PubMed

Reimer, Andreas; Vasilevich, Aliaksei; Hulshof, Frits; Viswanathan, Priyalakshmi; van Blitterswijk, Clemens A; de Boer, Jan; Watt, Fiona M

2016-01-13

It is well established that topographical features modulate cell behaviour, including cell morphology, proliferation and differentiation. To define the effects of topography on human induced pluripotent stem cells (iPSC), we plated cells on a topographical library containing over 1000 different features in medium lacking animal products (xeno-free). Using high content imaging, we determined the effect of each topography on cell proliferation and expression of the pluripotency marker Oct4 24 h after seeding. Features that maintained Oct4 expression also supported proliferation and cell-cell adhesion at 24 h, and by 4 days colonies of Oct4-positive, Sox2-positive cells had formed. Computational analysis revealed that small feature size was the most important determinant of pluripotency, followed by high wave number and high feature density. Using this information we correctly predicted whether any given topography within our library would support the pluripotent state at 24 h. This approach not only facilitates the design of substrates for optimal human iPSC expansion, but also, potentially, identification of topographies with other desirable characteristics, such as promoting differentiation.

Hydrostatic pressure in combination with topographical cues affects the fate of bone marrow-derived human mesenchymal stem cells for bone tissue regeneration.

PubMed

Reinwald, Yvonne; El Haj, Alicia J

2018-03-01

Topographical and mechanical cues are vital for cell fate, tissue development in vivo, and to mimic the native cell growth environment in vitro. To date, the combinatory effect of mechanical and topographical cues as not been thoroughly investigated. This study investigates the effect of PCL nanofiber alignment and hydrostatic pressure on stem cell differentiation for bone tissue regeneration. Bone marrow-derived human mesenchymal stem cells were seeded onto standard tissue culture plastic and electrospun random and aligned nanofibers. These substrates were either cultured statically or subjected to intermittent hydrostatic pressure at 270 kPa, 1 Hz for 60 min daily over 21 days in osteogenic medium. Data revealed higher cell metabolic activities for all mechanically stimulated cell culture formats compared with non-stimulated controls; and random fibers compared with aligned fibers. Fiber orientation influenced cell morphology and patterns of calcium deposition. Significant up-regulation of Collagen-I, ALP, and Runx-2 were observed for random and aligned fibers following mechanical stimulation; highest levels of osteogenic markers were expressed when hydrostatic pressure was applied to random fibers. These results indicate that fiber alignment and hydrostatic pressure direct stem cell fate and are important stimulus for tissue regeneration. © 2017 The Authors Journal of Biomedical Materials Research Part A Published by Wiley Periodicals, Inc. J Biomed Mater Res Part A: A: 629-640, 2018. © 2017 The Authors Journal of Biomedical Materials Research Part A Published by Wiley Periodicals, Inc.

Hydrostatic pressure in combination with topographical cues affects the fate of bone marrow‐derived human mesenchymal stem cells for bone tissue regeneration

PubMed Central

El Haj, Alicia J.

2017-01-01

Abstract Topographical and mechanical cues are vital for cell fate, tissue development in vivo, and to mimic the native cell growth environment in vitro. To date, the combinatory effect of mechanical and topographical cues as not been thoroughly investigated. This study investigates the effect of PCL nanofiber alignment and hydrostatic pressure on stem cell differentiation for bone tissue regeneration. Bone marrow‐derived human mesenchymal stem cells were seeded onto standard tissue culture plastic and electrospun random and aligned nanofibers. These substrates were either cultured statically or subjected to intermittent hydrostatic pressure at 270 kPa, 1 Hz for 60 min daily over 21 days in osteogenic medium. Data revealed higher cell metabolic activities for all mechanically stimulated cell culture formats compared with non‐stimulated controls; and random fibers compared with aligned fibers. Fiber orientation influenced cell morphology and patterns of calcium deposition. Significant up‐regulation of Collagen‐I, ALP, and Runx‐2 were observed for random and aligned fibers following mechanical stimulation; highest levels of osteogenic markers were expressed when hydrostatic pressure was applied to random fibers. These results indicate that fiber alignment and hydrostatic pressure direct stem cell fate and are important stimulus for tissue regeneration. © 2017 The Authors Journal of Biomedical Materials Research Part A Published by Wiley Periodicals, Inc. J Biomed Mater Res Part A: A: 629–640, 2018. PMID:28984025

Electric field induced microstructures in thin films on physicochemically heterogeneous and patterned substrates.

PubMed

Srivastava, Samanvaya; Reddy, P Dinesh Sankar; Wang, Cindy; Bandyopadhyay, Dipankar; Sharma, Ashutosh

2010-05-07

We study by nonlinear simulations the electric field induced pattern formation in a thin viscous film resting on a topographically or chemically patterned substrate. The thin film microstructures can be aligned to the substrate patterns within a window of parameters where the spinodal length scale of the field induced instability is close to the substrate periodicity. We investigate systematically the change in the film morphology and order when (i) the substrate pattern periodicity is varied at a constant film thickness and (ii) the film thickness is varied at a constant substrate periodicity. Simulations show two distinct pathway of evolution when the substrate-topography changes from protrusions to cavities. The isolated substrate defects generate locally ordered ripplelike structures distinct from the structures on a periodically patterned substrate. In the latter case, film morphology is governed by a competition between the pattern periodicity and the length scale of instability. Relating the thin film morphologies to the underlying substrate pattern has implications for field induced patterning and robustness of inter-interface pattern transfer, e.g., coding-decoding of information printed on a substrate.

The design of superhydrophobic stainless steel surfaces by controlling nanostructures: A key parameter to reduce the implantation of pathogenic bacteria.

PubMed

Bruzaud, Jérôme; Tarrade, Jeanne; Celia, Elena; Darmanin, Thierry; Taffin de Givenchy, Elisabeth; Guittard, Frédéric; Herry, Jean-Marie; Guilbaud, Morgan; Bellon-Fontaine, Marie-Noëlle

2017-04-01

Reducing bacterial adhesion on substrates is fundamental for various industries. In this work, new superhydrophobic surfaces are created by electrodeposition of hydrophobic polymers (PEDOT-F 4 or PEDOT-H 8 ) on stainless steel with controlled topographical features, especially at a nano-scale. Results show that anti-bioadhesive and anti-biofilm properties require the control of the surface topographical features, and should be associated with a low adhesion of water onto the surface (Cassie-Baxter state) with limited crevice features at the scale of bacterial cells (nano-scale structures). Copyright © 2016. Published by Elsevier B.V.

Electrostatic and dispersion interactions during protein adsorption on topographic nanostructures.

PubMed

Elter, Patrick; Lange, Regina; Beck, Ulrich

2011-07-19

Recently, biomaterials research has focused on developing functional implant surfaces with well-defined topographic nanostructures in order to influence protein adsorption and cellular behavior. To enhance our understanding of how proteins interact with such surfaces, we analyze the adsorption of lysozyme on an oppositely charged nanostructure using a computer simulation. We present an algorithm that combines simulated Brownian dynamics with numerical field calculation methods to predict the preferred adsorption sites for arbitrarily shaped substrates. Either proteins can be immobilized at their initial adsorption sites or surface diffusion can be considered. Interactions are analyzed on the basis of Derjaguin-Landau-Verway-Overbeek (DLVO) theory, including electrostatic and London dispersion forces, and numerical solutions are derived using the Poisson-Boltzmann and Hamaker equations. Our calculations show that for a grooved nanostructure (i.e., groove and plateau width 8 nm, height 4 nm), proteins first contact the substrate primarily near convex edges because of better geometric accessibility and increased electric field strengths. Subsequently, molecules migrate by surface diffusion into grooves and concave corners, where short-range dispersion interactions are maximized. In equilibrium, this mechanism leads to an increased surface protein concentration in the grooves, demonstrating that the total amount of protein per surface area can be increased if substrates have concave nanostructures.

Fabrication and characterization of conductive anodic aluminum oxide substrates

NASA Astrophysics Data System (ADS)

Altuntas, Sevde; Buyukserin, Fatih

2014-11-01

Biomaterials that allow the utilization of electrical, chemical and topographic cues for improved neuron-material interaction and neural regeneration hold great promise for nerve tissue engineering applications. The nature of anodic aluminum oxide (AAO) membranes intrinsically provides delicate control over topographic and chemical cues for enhanced cell interaction; however their use in nerve regeneration is still very limited. Herein, we report the fabrication and characterization of conductive AAO (CAAO) surfaces for the ultimate goal of integrating electrical cues for improved nerve tissue behavior on the nanoporous substrate material. Parafilm was used as a protecting polymer film, for the first time, in order to obtain large area (50 cm2) free-standing AAO membranes. Carbon (C) was then deposited on the AAO surface via sputtering. Morphological characterization of the CAAO surfaces revealed that the pores remain open after the deposition process. The presence of C on the material surface and inside the nanopores was confirmed by XPS and EDX studies. Furthermore, I-V curves of the surface were used to extract surface resistance values and conductive AFM demonstrated that current signals can only be achieved where conductive C layer is present. Finally, novel nanoporous C films with controllable pore diameters and one dimensional (1-D) C nanostructures were obtained by the dissolution of the template AAO substrate.

Fabrication of cell container arrays with overlaid surface topographies.

PubMed

Truckenmüller, Roman; Giselbrecht, Stefan; Escalante-Marun, Maryana; Groenendijk, Max; Papenburg, Bernke; Rivron, Nicolas; Unadkat, Hemant; Saile, Volker; Subramaniam, Vinod; van den Berg, Albert; van Blitterswijk, Clemens; Wessling, Matthias; de Boer, Jan; Stamatialis, Dimitrios

2012-02-01

This paper presents cell culture substrates in the form of microcontainer arrays with overlaid surface topographies, and a technology for their fabrication. The new fabrication technology is based on microscale thermoforming of thin polymer films whose surfaces are topographically prepatterned on a micro- or nanoscale. For microthermoforming, we apply a new process on the basis of temporary back moulding of polymer films and use the novel concept of a perforated-sheet-like mould. Thermal micro- or nanoimprinting is applied for prepatterning. The novel cell container arrays are fabricated from polylactic acid (PLA) films. The thin-walled microcontainer structures have the shape of a spherical calotte merging into a hexagonal shape at their upper circumferential edges. In the arrays, the cell containers are arranged densely packed in honeycomb fashion. The inner surfaces of the highly curved container walls are provided with various topographical micro- and nanopatterns. For a first validation of the microcontainer arrays as in vitro cell culture substrates, C2C12 mouse premyoblasts are cultured in containers with microgrooved surfaces and shown to align along the grooves in the three-dimensional film substrates. In future stem-cell-biological and tissue engineering applications, microcontainers fabricated using the proposed technology may act as geometrically defined artificial microenvironments or niches.

The Effect of Substrate Topography on Direct Reprogramming of Fibroblasts to Induced Neurons

PubMed Central

Kulangara, Karina; Adler, Andrew F.; Wang, Hong; Chellappan, Malathi; Hammett, Ellen; Yasuda, Ryohei; Leong, Kam W.

2014-01-01

Cellular reprogramming holds tremendous potential for cell therapy and regenerative medicine. Recently, fibroblasts have been directly converted into induced neurons (iNs) by overexpression of the neuronal transcription factors Ascl1, Brn2 and Myt1L. Hypothesizing that cell-topography interactions could influence the fibroblast-to-neuron reprogramming process, we investigated the effects of various topographies on iNs produced by direct reprogramming. Final iN purity and conversion efficiency were increased on micrograting substrates. Neurite branching was increased on microposts and decreased on microgratings, with a simplified dendritic arbor characterized by the reduction of MAP2+ neurites. Neurite outgrowth increased significantly on various topographies. DNA microarray analysis detected 20 differentially expressed genes in iNs reprogrammed on smooth versus microgratings, and quantitative PCR (qPCR) confirmed the upregulation of Vip and downregulation of Thy1 and Bmp5 on microgratings. Electrophysiology and calcium imaging verified the functionality of these iNs. This study demonstrates the potential of applying topographical cues to optimize cellular reprogramming. PMID:24709523

Migration speed and directionality switch of normal epithelial cells after TGF-β1-induced EMT (tEMT) on micro-structured polydimethylsiloxane (PDMS) substrates with variations in stiffness and topographic patterning.

PubMed

Wu, Tsung-Hsien; Li, Chia-Hui; Tang, Ming-Jer; Liang, Jen-I; Chen, Chia-Hsin; Yeh, Ming-Long

2013-10-01

The epithelial to mesenchymal transition (EMT) involves several physiological and pathological phenomena and endows cells with invasive and migratory properties. However, the effects of substrate stiffness and topography on the migration of cells before or after transforming growth factor-β1 (TGF-β1)-induced EMT (tEMT) are unknown. Herein, we seed control or tEMT NMuMG cells on the 2D patterns consisted of 1 μm or 5 μm line-widths and groove or cone patterns on either 2 MPa (1.96 ± 0.48 MPa) or 4 MPa (3.70 ± 0.74 MPa) polydimethylsiloxane (PDMS) substrates. After tEMT, the increased expression of α-SMA with vinculin in focal adhesion (FA) sites led to an acceleration of tEMT cell motility. On the 2 MPa substrate, the most influenced substrate was the 1 μm, cone-patterned substrate, where the tEMT cells' motility decelerated by 0.13 μm/min (36% slower than the cells on groove pattern). However, on the 5 μm, groove-patterned substrate, where the tEMT cells demonstrated the most rapid motility relative to the control cells, with an increment of 0.18 μm/min (100%). Among the different physical cues from substrate, the cone pattern could impede the migration speed of tEMT cells. Furthermore, we recommend the groove-patterned with a 5 μm line-width substrate as a useful tool to differentiate control and tEMT cells by migration speed.

STM/STS studies of Ca-intercalated bilayer graphene

NASA Astrophysics Data System (ADS)

Shimizu, Ryota; Sugawara, Katsuaki; Kanetani, Kohei; Iwaya, Katsuya; Sato, Takafumi; Takahashi, Takashi; Hitosugi, Taro

2013-03-01

We have performed low temperature scanning tunneling microscopy/spectroscopy (STM/STS) measurements on a two-dimensional Ca-intercalated bilayer graphene epitaxially grown on a 6H-SiC(0001) substrate. The STM topographic images clearly resolve each intercalated Ca atom with graphene-based honeycomb lattice. Furthermore, we found a clear ×2.5 modulation in the topography, implying charge density wave or Moiré pattern originated from the interaction with the SiC substrate. Comparison with ARPES measurements provided us of further insight into the Fermi surface deduced from STS.

Biophysical Regulation of Cell Behavior—Cross Talk between Substrate Stiffness and Nanotopography

PubMed Central

Yang, Yong; Wang, Kai; Gu, Xiaosong; Leong, Kam W.

2017-01-01

The stiffness and nanotopographical characteristics of the extracellular matrix (ECM) influence numerous developmental, physiological, and pathological processes in vivo. These biophysical cues have therefore been applied to modulate almost all aspects of cell behavior, from cell adhesion and spreading to proliferation and differentiation. Delineation of the biophysical modulation of cell behavior is critical to the rational design of new biomaterials, implants, and medical devices. The effects of stiffness and topographical cues on cell behavior have previously been reviewed, respectively; however, the interwoven effects of stiffness and nanotopographical cues on cell behavior have not been well described, despite similarities in phenotypic manifestations. Herein, we first review the effects of substrate stiffness and nanotopography on cell behavior, and then focus on intracellular transmission of the biophysical signals from integrins to nucleus. Attempts are made to connect extracellular regulation of cell behavior with the biophysical cues. We then discuss the challenges in dissecting the biophysical regulation of cell behavior and in translating the mechanistic understanding of these cues to tissue engineering and regenerative medicine. PMID:29071164

Selective modulation of cell response on engineered fractal silicon substrates

PubMed Central

Gentile, Francesco; Medda, Rebecca; Cheng, Ling; Battista, Edmondo; Scopelliti, Pasquale E.; Milani, Paolo; Cavalcanti-Adam, Elisabetta A.; Decuzzi, Paolo

2013-01-01

A plethora of work has been dedicated to the analysis of cell behavior on substrates with ordered topographical features. However, the natural cell microenvironment is characterized by biomechanical cues organized over multiple scales. Here, randomly rough, self-affinefractal surfaces are generated out of silicon,where roughness Ra and fractal dimension Df are independently controlled. The proliferation rates, the formation of adhesion structures, and the morphology of 3T3 murine fibroblasts are monitored over six different substrates. The proliferation rate is maximized on surfaces with moderate roughness (Ra ~ 40 nm) and large fractal dimension (Df ~ 2.4); whereas adhesion structures are wider and more stable on substrates with higher roughness (Ra ~ 50 nm) and lower fractal dimension (Df ~ 2.2). Higher proliferation occurson substrates exhibiting densely packed and sharp peaks, whereas more regular ridges favor adhesion. These results suggest that randomly roughtopographies can selectively modulate cell behavior. PMID:23492898

Micropatterned Azopolymer Surfaces Modulate Cell Mechanics and Cytoskeleton Structure.

PubMed

Rianna, Carmela; Ventre, Maurizio; Cavalli, Silvia; Radmacher, Manfred; Netti, Paolo A

2015-09-30

Physical and chemical characteristics of materials are important regulators of cell behavior. In particular, cell elasticity is a fundamental parameter that reflects the state of a cell. Surface topography finely modulates cell fate and function via adhesion mediated signaling and cytoskeleton generated forces. However, how topographies alter cell mechanics is still unclear. In this work we have analyzed the mechanical properties of peripheral and nuclear regions of NIH-3T3 cells on azopolymer substrates with different topographic patterns. Micrometer scale patterns in the form of parallel ridges or square lattices of surface elevations were encoded on light responsive azopolymer films by means of contactless optical methods. Cell mechanics was investigated by atomic force microscopy (AFM). Cells and consequently the cell cytoskeleton were oriented along the linear patterns affecting cytoskeletal structures, e.g., formation of actin stress fibers. Our data demonstrate that topographic substrate patterns are recognized by cells and mechanical information is transferred by the cytoskeleton. Furthermore, cytoskeleton generated forces deform the nucleus, changing its morphology that appears to be related to different mechanical properties in the nuclear region.

Resveratrol serves as a protein-substrate interaction stabilizer in human SIRT1 activation

NASA Astrophysics Data System (ADS)

Hou, Xuben; Rooklin, David; Fang, Hao; Zhang, Yingkai

2016-11-01

Resveratrol is a natural compound found in red wine that has been suggested to exert its potential health benefit through the activation of SIRT1, a crucial member of the mammalian NAD+-dependent deacetylases. SIRT1 has emerged as an attractive therapeutic target for many aging related diseases, however, how its activity can only be activated toward some specific substrates by resveratrol has been poorly understood. Herein, by employing extensive molecular dynamics simulations as well as fragment-centric topographical mapping of binding interfaces, we have clarified current controversies in the literature and elucidated that resveratrol plays an important activation role by stabilizing SIRT1/peptide interactions in a substrate-specific manner. This new mechanism highlights the importance of the N-terminal domain in substrate recognition, explains the activity restoration role of resveratrol toward some “loose-binding” substrates of SIRT1, and has significant implications for the rational design of new substrate-specific SIRT1 modulators.

Resveratrol serves as a protein-substrate interaction stabilizer in human SIRT1 activation.

PubMed

Hou, Xuben; Rooklin, David; Fang, Hao; Zhang, Yingkai

2016-11-30

Resveratrol is a natural compound found in red wine that has been suggested to exert its potential health benefit through the activation of SIRT1, a crucial member of the mammalian NAD + -dependent deacetylases. SIRT1 has emerged as an attractive therapeutic target for many aging related diseases, however, how its activity can only be activated toward some specific substrates by resveratrol has been poorly understood. Herein, by employing extensive molecular dynamics simulations as well as fragment-centric topographical mapping of binding interfaces, we have clarified current controversies in the literature and elucidated that resveratrol plays an important activation role by stabilizing SIRT1/peptide interactions in a substrate-specific manner. This new mechanism highlights the importance of the N-terminal domain in substrate recognition, explains the activity restoration role of resveratrol toward some "loose-binding" substrates of SIRT1, and has significant implications for the rational design of new substrate-specific SIRT1 modulators.

Quantitative Photochemical Immobilization of Biomolecules on Planar and Corrugated Substrates: A Versatile Strategy for Creating Functional Biointerfaces

PubMed Central

Martin, Teresa A.; Herman, Christine T.; Limpoco, Francis T.; Michael, Madeline C.; Potts, Gregory K.; Bailey, Ryan C.

2014-01-01

Methods for the generation of substrates presenting biomolecules in a spatially controlled manner are enabling tools for applications in biosensor systems, microarray technologies, fundamental biological studies and biointerface science. We have implemented a method to create biomolecular patterns by using light to control the direct covalent immobilization of biomolecules onto benzophenone-modified glass substrates. We have generated substrates presenting up to three different biomolecules patterned in sequence, and demonstrate biomolecular photopatterning on corrugated substrates. The chemistry of the underlying monolayer was optimized to incorporate poly(ethylene glycol) to enable adhesive cell adhesion onto patterned extracellular matrix proteins. Substrates were characterized with contact angle goniometry, AFM, and immunofluorescence microscopy. Importantly, radioimmunoassays were performed to quantify the site density of immobilized biomolecules on photopatterned substrates. Retention of function of photopatterned proteins was demonstrated both by native ligand recognition and cell adhesion to photopatterned substrates, revealing that substrates generated with this method are suitable for probing specific cell receptor-ligand interactions. This molecularly general photochemical patterning method is an enabling tool that will allow the creation of substrates presenting both biochemical and topographical variation, which is an important feature of many native biointerfaces. PMID:21793535

Influence of different topographic correction strategies on mountain vegetation classification accuracy in the Lancang Watershed, China

NASA Astrophysics Data System (ADS)

Zhang, Zhiming; de Wulf, Robert R.; van Coillie, Frieke M. B.; Verbeke, Lieven P. C.; de Clercq, Eva M.; Ou, Xiaokun

2011-01-01

Mapping of vegetation using remote sensing in mountainous areas is considerably hampered by topographic effects on the spectral response pattern. A variety of topographic normalization techniques have been proposed to correct these illumination effects due to topography. The purpose of this study was to compare six different topographic normalization methods (Cosine correction, Minnaert correction, C-correction, Sun-canopy-sensor correction, two-stage topographic normalization, and slope matching technique) for their effectiveness in enhancing vegetation classification in mountainous environments. Since most of the vegetation classes in the rugged terrain of the Lancang Watershed (China) did not feature a normal distribution, artificial neural networks (ANNs) were employed as a classifier. Comparing the ANN classifications, none of the topographic correction methods could significantly improve ETM+ image classification overall accuracy. Nevertheless, at the class level, the accuracy of pine forest could be increased by using topographically corrected images. On the contrary, oak forest and mixed forest accuracies were significantly decreased by using corrected images. The results also showed that none of the topographic normalization strategies was satisfactorily able to correct for the topographic effects in severely shadowed areas.

Properties of pressure sensitive adhesives found in paper recycling operations

Treesearch

Ryan F. Verhulst; Steven J. Severtson; Jihui Guo; Carl J. Houtman

2006-01-01

Hot melt and water-based adhesives are very different materials with similar physical properties. Their ability to act as adhesives is due to physical bonds and mechanical interlocks which form as adhesive flows into topographical features on the substrate surface. Hot-melt adhesives are based on soft, rubbery polymers while water-based adhesives are usually acrylic...

Surface topographical effects on the structural growth of thick sputtered metal and alloy coatings

NASA Technical Reports Server (NTRS)

Spalvins, T.; Brainard, W. A.

1974-01-01

Thick sputtered S-Monel, silver, and 304 stainless steel coatings were deposited on mica and metal substrates with various surface finishes to investigate the structural growth of the coating by scanning electron microscopy. The geometry and the surface structure of the nodules are characterized. Compositional changes within the coating were analyzed by X-ray dispersion miscroscopy. Defects in the surface finish act as preferential nucleation sites and form isolated and complex nodules and various surface overgrowths in the coating. The nodule boundaries are very vulnerable to chemical etching, and these nodules do not disappear after full annealing. Further, they have undesirable effects on mechanical properties; cracks are initiated at the nodules when the coating is stressed by mechanical forces.

Assembly of metallic nanoparticle arrays on glass via nanoimprinting and thin-film dewetting

PubMed Central

Lee, Sun-Kyu; Hwang, Sori; Kim, Yoon-Kee

2017-01-01

We propose a nanofabrication process to generate large-area arrays of noble metal nanoparticles on glass substrates via nanoimprinting and dewetting of metallic thin films. Glass templates were made via pattern transfer from a topographic Si mold to an inorganically cross-linked sol–gel (IGSG) resist on glass using a two-layer polydimethylsiloxane (PDMS) stamp followed by annealing, which turned the imprinted resist into pure silica. The transparent, topographic glass successfully templated the assembly of Au and Ag nanoparticle arrays via thin-film deposition and dewetting at elevated temperatures. The microstructural and mechanical characteristics that developed during the processes were discussed. The results are promising for low-cost mass fabrication of devices for several photonic applications. PMID:28546899

Assembly of metallic nanoparticle arrays on glass via nanoimprinting and thin-film dewetting.

PubMed

Lee, Sun-Kyu; Hwang, Sori; Kim, Yoon-Kee; Oh, Yong-Jun

2017-01-01

We propose a nanofabrication process to generate large-area arrays of noble metal nanoparticles on glass substrates via nanoimprinting and dewetting of metallic thin films. Glass templates were made via pattern transfer from a topographic Si mold to an inorganically cross-linked sol-gel (IGSG) resist on glass using a two-layer polydimethylsiloxane (PDMS) stamp followed by annealing, which turned the imprinted resist into pure silica. The transparent, topographic glass successfully templated the assembly of Au and Ag nanoparticle arrays via thin-film deposition and dewetting at elevated temperatures. The microstructural and mechanical characteristics that developed during the processes were discussed. The results are promising for low-cost mass fabrication of devices for several photonic applications.

Application of digital terrain data to quantify and reduce the topographic effect on LANDSAT data

NASA Technical Reports Server (NTRS)

Justice, C. O.; Wharton, S. W.; Holben, B. N. (Principal Investigator)

1980-01-01

Integration of LANDSAT multispectral scanner (MSS) data with 30 m U.S. Geological Survey (USGS) digital terrain data was undertaken to quantify and reduce the topographic effect on imagery of a forested mountain ridge test site in central Pennsylvania. High Sun angle imagery revealed variation of as much as 21 pixel values in data for slopes of different angles and aspects with uniform surface cover. Large topographic effects were apparent in MSS 4 and 5 was due to a combination of high absorption by the forest cover and the MSS quantization. Four methods for reducing the topographic effect were compared. Band ratioing of MSS 6/5 and MSS 7/5 did not eliminate the topographic effect because of the lack of variation in MSS 4 and 5 radiances. The three radiance models examined to reduce the topographic effect required integration of the digital terrain data. Two Lambertian models increased the variation in the LANDSAT radiances. The nonLambertian model considerably reduced (86 per cent) the topographic effect in the LANDSAT data. The study demonstrates that high quality digital terrain data, as provided by the USGS digital elevation model data, can be used to enhance the utility of multispectral satellite data.

Directed Self-Assembly of Star-Block Copolymers by Topographic Nanopatterns through Nucleation and Growth Mechanism.

PubMed

Krishnan, Mohan Raj; Lu, Kai-Yuan; Chiu, Wen-Yu; Chen, I-Chen; Lin, Jheng-Wei; Lo, Ting-Ya; Georgopanos, Prokopios; Avgeropoulos, Apostolos; Lee, Ming-Chang; Ho, Rong-Ming

2018-04-01

Exploring the ordering mechanism and dynamics of self-assembled block copolymer (BCP) thin films under confined conditions are highly essential in the application of BCP lithography. In this study, it is aimed to examine the self-assembling mechanism and kinetics of silicon-containing 3-arm star-block copolymer composed of polystyrene (PS) and poly(dimethylsiloxane) blocks as nanostructured thin films with perpendicular cylinders and controlled lateral ordering by directed self-assembly using topographically patterned substrates. The ordering process of the star-block copolymer within fabricated topographic patterns with PS-functionalized sidewall can be carried out through the type of secondary (i.e., heterogeneous) nucleation for microphase separation initiated from the edge and/or corner of the topographic patterns, and directed to grow as well-ordered hexagonally packed perpendicular cylinders. The growth rate for the confined microphase separation is highly dependent upon the dimension and also the geometric texture of the preformed pattern. Fast self-assembly for ordering of BCP thin film can be achieved by lowering the confinement dimension and also increasing the concern number of the preformed pattern, providing a new strategy for the design of BCP lithography from the integration of top-down and bottom-up approaches. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Rapid epitaxy-free graphene synthesis on silicidated polycrystalline platinum

PubMed Central

Babenko, Vitaliy; Murdock, Adrian T.; Koós, Antal A.; Britton, Jude; Crossley, Alison; Holdway, Philip; Moffat, Jonathan; Huang, Jian; Alexander-Webber, Jack A.; Nicholas, Robin J.; Grobert, Nicole

2015-01-01

Large-area synthesis of high-quality graphene by chemical vapour deposition on metallic substrates requires polishing or substrate grain enlargement followed by a lengthy growth period. Here we demonstrate a novel substrate processing method for facile synthesis of mm-sized, single-crystal graphene by coating polycrystalline platinum foils with a silicon-containing film. The film reacts with platinum on heating, resulting in the formation of a liquid platinum silicide layer that screens the platinum lattice and fills topographic defects. This reduces the dependence on the surface properties of the catalytic substrate, improving the crystallinity, uniformity and size of graphene domains. At elevated temperatures growth rates of more than an order of magnitude higher (120 μm min−1) than typically reported are achieved, allowing savings in costs for consumable materials, energy and time. This generic technique paves the way for using a whole new range of eutectic substrates for the large-area synthesis of 2D materials. PMID:26175062

Polyethyleneimine patterns obtained by laser-transfer assisted by a Dynamic Release Layer onto Themanox soft substrates for cell adhesion study

NASA Astrophysics Data System (ADS)

Dinca, V.; Mattle, T.; Palla Papavlu, A.; Rusen, L.; Luculescu, C.; Lippert, T.; Dinescu, M.

2013-08-01

The use of LIFT (Laser Induced Forward Transfer) for localized and high spatial resolution printing of many types of functional organic and inorganic, biological or synthetic materials onto substrates is an effective method in various domains (electronics, sensors, and surface biofunctionalization). Although extensive research has been dedicated to the LIFT process in the last years, there is an increasing interest for combining the advantages of this technique with specific materials characteristics for obtaining localized structures or for creating physical guidance structures that could be used as biological scaffolds. Within this context, we aim to study a new aspect related to combining the advantages of Dynamic Release Layer assisted LIFT (DRL-LIFT) with a soft substrate (i.e. Thermanox) for obtaining surface functionalization with micro and nano "porous" polymeric structures. The structures obtained with different topographical properties were evaluated by scanning electron microscopy, atomic force microscopy, optical and fluorescence microscopy. Subsequently, the structures were used as a base for cellular behavior study platforms. Preliminary in vitro tests involving two types of cells, fibroblast and oligodendrocytes, were performed on these LIFT printed platforms.

Environmental implications of test-to-substrate attachment among some modern sublittoral foraminifera

USGS Publications Warehouse

Poag, C. Wylie

1982-01-01

The attachment mode of these species suggests that the added weight of the quartz grains may reduce displacement during the periodic resuspension of the shelf sediments by longshore and tidal current motion. The distribution of living populations of these species corroborates sedimentological inferences that little or no modern deposition takes place on the sampled topographic highs.

Polypeptides Based Molecular Electronics

DTIC Science & Technology

2008-10-06

average of 0.82 nm, corresponding to the theoretical height of a MPTMS monolayer of 0.87nm. Fourier Transform Infrared Spectroscopy (FTIR) spectrum of 3... Infrared Spectroscopy (FTIR) of 3-Mercaptopropyl trimethoxysilane (MPTMS) layer on Si wafer Figure 23a. Topographical image of peptide on MPTMS...transform infrared spectroscopy . Peptide with COOH group is proven to attach to Aminopropyltrimethoxysilane (APTES) functionalized silicon substrate

Molecular modeling of fibronectin adsorption on topographically nanostructured rutile (110) surfaces

NASA Astrophysics Data System (ADS)

Guo, Chuangqiang; Wu, Chunya; Chen, Mingjun; Zheng, Ting; Chen, Ni; Cummings, Peter T.

2016-10-01

To investigate the topographical dependency of protein adsorption, molecular dynamics simulations were employed to describe the adsorption behavior of the tenth type-III module of fibronectin (FN-III10) on nanostructured rutile (110) surfaces. The results indicated that the residence time of adsorbed FN-III10 largely relied on its binding mode (direct or indirect) with the substrate and the region for protein migration on the periphery (protrusion) or in the interior (cavity or groove) of nanostructures. In the direct binding mode, FN-III10 molecules were found to be 'trapped' at the anchoring sites of rutile surface, or even penetrate deep into the interior of nanostructures, regardless of the presented geometrical features. In the indirect binding mode, FN-III10 molecules were indirectly connected to the substrate via a hydrogen-bond network (linking FN-III10 and interfacial hydrations). The facets created by nanostructures, which exerted restraints on protein migration, were suggested to play an important role in the stability of indirect FN-III10-rutile binding. However, a doubly unfavorable situation - indirect FN-III10-rutile connections bridged by a handful of mediating waters and few constraints on movement of protein provided by nanostructures - would result in an early desorption of protein.

Tuning Material Properties of Oxides and Nitrides by Substrate Biasing during Plasma-Enhanced Atomic Layer Deposition on Planar and 3D Substrate Topographies

PubMed Central

2018-01-01

Oxide and nitride thin-films of Ti, Hf, and Si serve numerous applications owing to the diverse range of their material properties. It is therefore imperative to have proper control over these properties during materials processing. Ion-surface interactions during plasma processing techniques can influence the properties of a growing film. In this work, we investigated the effects of controlling ion characteristics (energy, dose) on the properties of the aforementioned materials during plasma-enhanced atomic layer deposition (PEALD) on planar and 3D substrate topographies. We used a 200 mm remote PEALD system equipped with substrate biasing to control the energy and dose of ions by varying the magnitude and duration of the applied bias, respectively, during plasma exposure. Implementing substrate biasing in these forms enhanced PEALD process capability by providing two additional parameters for tuning a wide range of material properties. Below the regimes of ion-induced degradation, enhancing ion energies with substrate biasing during PEALD increased the refractive index and mass density of TiOx and HfOx and enabled control over their crystalline properties. PEALD of these oxides with substrate biasing at 150 °C led to the formation of crystalline material at the low temperature, which would otherwise yield amorphous films for deposition without biasing. Enhanced ion energies drastically reduced the resistivity of conductive TiNx and HfNx films. Furthermore, biasing during PEALD enabled the residual stress of these materials to be altered from tensile to compressive. The properties of SiOx were slightly improved whereas those of SiNx were degraded as a function of substrate biasing. PEALD on 3D trench nanostructures with biasing induced differing film properties at different regions of the 3D substrate. On the basis of the results presented herein, prospects afforded by the implementation of this technique during PEALD, such as enabling new routes for topographically selective deposition on 3D substrates, are discussed. PMID:29554799

The effects of nanophase ceramic materials on select functions of human mesenchymal stem cells

NASA Astrophysics Data System (ADS)

Dulgar-Tulloch, Aaron Joseph

2005-11-01

Modification of the chemistry and surface topography of nanophase ceramics can provide biomaterial formulations capable of directing the functions of adherent cells. This effect relies on the type, amount, and conformation of adsorbed proteins that mediate the adhesion of mesenchymally-descended lineages. The mechanisms driving this response are not yet well-understood and have not been investigated for human mesenchymal stem cells (HMSCs), a progenitor-lineage critical to orthopaedic biomaterials. The present study addressed these needs by examining the in vitro adhesion, proliferation, and osteogenic differentiation of HMSCs as a function of substrate chemistry and grain size, with particular attention to the protein-mediated mechanisms of cell adhesion. Alumina, titania, and hydroxyapatite substrates were prepared with 1500, 200, 50, and 24 (alumina only) nm grain sizes, and characterized with respect to surface properties, porosity, composition, and phase. Adhesion of HMSCs was dependent upon both chemistry and grain size. Specifically, adhesion on alumina and hydroxyapatite was reduced on 50 and 24 (alumina only) nm surfaces, as compared to 1500 and 200 nm surfaces, while adhesion on titania substrates was independent of grain size. Investigation into the protein-mediated mechanisms of this response identified vitronectin as the dominant adhesive protein, demonstrated random protein distribution across the substrate surface without aggregation or segregation, and confirmed the importance of the type, amount, and conformation of adsorbed proteins in cell adhesion. Minimal cell proliferation was observed on 50 and 24 (alumina only) nm substrates of any chemistry. Furthermore, cell proliferation was up-regulated on 200 nm substrates after 7 days of culture. Osteogenic differentiation was not detected on 50 nm substrates throughout the 28 day culture period. In contrast, osteogenic differentiation was strongly enhanced on 200 nm substrates, occurring approximately 7 days earlier and in greater magnitude than that observed on 1500 nm substrates. In summary, the current study elucidated the chemical and topographical cues necessary to optimize the vitronectin-mediated adhesion, proliferation, and differentiation of human mesenchymal stem cells on ceramic surfaces. These results expand the understanding of surface-mediated cell functions and provide information pertinent to the design of next-generation orthopaedic and tissue engineering biomaterials.

Nonequilibrium spin crossover in copper phthalocyanine

NASA Astrophysics Data System (ADS)

Siegert, Benjamin; Donarini, Andrea; Grifoni, Milena

2016-03-01

We demonstrate the nonequilibrium tip induced control of the spin state of copper phthalocyanine on an insulator coated substrate. We find that, under the condition of energetic proximity of many-body neutral excited states to the anionic ground state, the system can undergo a population inversion towards these excited states. The resulting state of the system is accompanied by a change in the total spin quantum number. Experimental signatures of the crossover are the appearance of additional nodal planes in the topographical scanning tunneling microscopy images as well as a strong suppression of the current near the center of the molecule. The robustness of the effect against moderate charge conserving relaxation processes has also been tested.

Afforestation contribution to Carbon and Nitrogen budgets of forest in a natural park in south Spain

NASA Astrophysics Data System (ADS)

Lozano-García, Beatriz; Parras-Alcántara, Luis

2015-04-01

Forests are important ecosystems because they provide wood products to society as well as many services (recreation, habitat functions, the regulation of water, erosion, and air quality). However, the society has recently focused its attention on forests for two reasons; sequestration of carbon, on the one hand, and provision of biomass for bioenergy, on the other, also illustrates the possible trade-off even within the theme of climate change mitigation. Due to this fact, the forest surface has increased in Spain, as well in Europe in the last decades. The area covered by forest represents 34% in Europe and 35.6% in Spain compared to the total surface. A powerful afforestation policy was carried out in Spain from the 40's decade in forward. The main objective was to increase the forest surface with trees. Two main actions were developed under these repopulations, the transformation of pasture land in forest, on the one hand, and the introduction of fast-growing tree species, on the second hand. Therefore, currently, there are a lot of forest areas in Spain in which the introduced species coexist with native. In addition, the spatial variation of soil properties is significantly influenced by some environmental factors such as topographic aspect that induced microclimate differences, topographic (landscape) positions, parent materials, and vegetation communities. Topographic aspect induces local variation in temperature and precipitation solar radiation and relative humidity, which along with chemical and physical composition of the substrate, are the main regulators of decomposition rates of organic matter. The aim of this study were, i) to evaluate the effect of afforestation policies on carbon and nitrogen budgets in a natural park in Spain and ii) to study the topographic aspect effect on the capacity of SOC and N storage. Our results show how the afforestated areas (in which there are simultaneously both, natural species and introduced species) had higher soil organic carbon (SOC) and nitrogen (N) concentrations and SOC and N stocks than the natural areas.

Topographic, optical and chemical properties of zinc particle coatings deposited by means of atmospheric pressure plasma

NASA Astrophysics Data System (ADS)

Wallenhorst, L. M.; Loewenthal, L.; Avramidis, G.; Gerhard, C.; Militz, H.; Ohms, G.; Viöl, W.

2017-07-01

In this research, topographic, optical and chemical properties of zinc oxide layers deposited by a cold plasma-spray process were measured. Here, zinc micro particles were fed to the afterglow of a plasma spark discharge whereas the substrates were placed in a quite cold zone of the effluent plasma jet. In this vein, almost closed layers were realised on different samples. As ascertained by laser scanning and atomic force microscopic measurements the particle size of the basic layer is in the nanometre scale. Additionally, larger particles and agglomerates were found on its top. The results indicate a partial plasma-induced diminishment of the initial particles, most probably due to melting or vaporisation. It is further shown that the plasma gives rise to an increased oxidation of such particles as confirmed by X-ray photoelectron spectroscopy. Quantitative analysis of the resulting mixed layer was performed. It is shown that the deposited layers consist of zinc oxide and elemental zinc in approximately equal shares. In addition, the layer's band gap energy was determined by spectroscopic analysis. Here, considerable UV blocking properties of the deposited layers were observed. Possible underlying effects as well as potential applications are presented.

Dual Imprinted Polymer Thin Films via Pattern Directed Self-Organization.

PubMed

Grolman, Danielle; Bandyopadhyay, Diya; Al-Enizi, Abdullah; Elzatahry, Ahmed; Karim, Alamgir

2017-06-21

Synthetic topographically patterned films and coatings are typically contoured on one side, yet many of nature's surfaces have distinct textures on different surfaces of the same object. Common examples are the top and bottom sides of the butterfly wing or lotus leaf, onion shells, and the inside versus outside of the stem of a flower. Inspired by nature, we create dual (top and bottom) channel patterned polymer films. To this end, we first develop a novel fabrication method to create ceramic line channel relief structures by converting the oligomeric residue of stamped poly(dimethylsiloxane) (PDMS) nanopatterns on silicon substrates to glass (SiOx, silica) by ultraviolet-ozone (UVO) exposure. These silica patterned substrates are flow coated with polystyrene (PS) films and confined within an identically patterned top confining soft PDMS elastomer film. Annealing of the sandwich structures drives the PS to rapidly mold fill the top PDMS pattern in conjunction with a dewetting tendency of the PS on the silica pattern. Varying the film thickness h, from less than to greater than the pattern height, and varying the relative angle between the top-down and bottom-up patterned confinement surfaces create interesting uniform and nonuniform digitized defects in PS channel patterns, as also a defect-free channel regime. Our dual patterned polymer channels provide a novel fabrication route to topographically imprinted Moiré patterns (whose applications range from security encrypting holograms to sensitive strain gauges), and their basic laser light diffractions properties are illustrated and compared to graphical simulations and 2D-FFT of real-space AFM channel patterns. While traditional "geometrical" and "fringe" Moiré patterns function by superposition of two misaligned optical patterned transmittance gratings, our topographic pattern gratings are quite distinct and may allow for more unique holographic optical characteristics with further development.

Interpreting locomotor biomechanics from the morphology of human footprints.

PubMed

Hatala, Kevin G; Wunderlich, Roshna E; Dingwall, Heather L; Richmond, Brian G

2016-01-01

Fossil hominin footprints offer unique direct windows to the locomotor behaviors of our ancestors. These data could allow a clearer understanding of the evolution of human locomotion by circumventing issues associated with indirect interpretations of habitual locomotor patterns from fossil skeletal material. However, before we can use fossil hominin footprints to understand better the evolution of human locomotion, we must first develop an understanding of how locomotor biomechanics are preserved in, and can be inferred from, footprint morphologies. In this experimental study, 41 habitually barefoot modern humans created footprints under controlled conditions in which variables related to locomotor biomechanics could be quantified. Measurements of regional topography (depth) were taken from 3D models of those footprints, and principal components analysis was used to identify orthogonal axes that described the largest proportions of topographic variance within the human experimental sample. Linear mixed effects models were used to quantify the influences of biomechanical variables on the first five principal axes of footprint topographic variation, thus providing new information on the biomechanical variables most evidently expressed in the morphology of human footprints. The footprint's overall depth was considered as a confounding variable, since biomechanics may be linked to the extent to which a substrate deforms. Three of five axes showed statistically significant relationships with variables related to both locomotor biomechanics and substrate displacement; one axis was influenced only by biomechanics and another only by the overall depth of the footprint. Principal axes of footprint morphological variation were significantly related to gait type (walking or running), kinematics of the hip and ankle joints and the distribution of pressure beneath the foot. These results provide the first quantitative framework for developing hypotheses regarding the biomechanical patterns reflected by fossil hominin footprints by demonstrating the statistically significant effects of specific kinematic variables on patterns of variation in footprint topography. Copyright © 2015 Elsevier Ltd. All rights reserved.

Material properties of viral nanocages explored by atomic force microscopy.

PubMed

van Rosmalen, Mariska G M; Roos, Wouter H; Wuite, Gijs J L

2015-01-01

Single-particle nanoindentation by atomic force microscopy (AFM) is an emergent technique to characterize the material properties of nano-sized proteinaceous systems. AFM uses a very small tip attached to a cantilever to scan the surface of the substrate. As a result of the sensitive feedback loop of AFM, the force applied by the tip on the substrate during scanning can be controlled and monitored. By accurately controlling this scanning force, topographical maps of fragile substrates can be acquired to study the morphology of the substrate. In addition, mechanical properties of the substrate like stiffness and breaking point can be determined by using the force spectroscopy capability of AFM. Here we discuss basics of AFM operation and how this technique is used to determine the structure and mechanical properties of protein nanocages, in particular viral particles. Knowledge of morphology as well as mechanical properties is essential for understanding viral life cycles, including genome packaging, capsid maturation, and uncoating, but also contributes to the development of diagnostics, vaccines, imaging modalities, and targeted therapeutic devices based on viruslike particles.

Transparent, biocompatible nanostructured surfaces for cancer cell capture and culture

PubMed Central

Cheng, Boran; He, Zhaobo; Zhao, Libo; Fang, Yuan; Chen, Yuanyuan; He, Rongxiang; Chen, Fangfang; Song, Haibin; Deng, Yuliang; Zhao, Xingzhong; Xiong, Bin

2014-01-01

Circulating tumor cells (CTCs) in the blood which have detached from both the primary tumor and any metastases may be considered as a “liquid biopsy” and are expected to replace tumor biopsies in the monitoring of treatment response and determining patient prognosis. Here, we introduce a facile and efficient CTC detection material made of hydroxyapatite/chitosan (HA/CTS), which is beneficial because of its transparency and excellent biological compatibility. Atomic force microscopy images show that the roughness of the HA/CTS nanofilm (HA/CTSNF) substrates can be controlled by changing the HA:CTS ratio. Enhanced local topographic interactions between nano-components on cancer cell membranes, and the antibody coated nanostructured substrate lead to improved CTC capture and separation. This remarkable nanostructured substrate has the potential for CTC culture in situ and merits further analysis. CTCs captured from artificial blood samples were observed in culture on HA/CTSNF substrates over a period of 14 days by using conventional staining methods (hematoxylin eosin and Wright’s stain). We conclude that these substrates are multifunctional materials capable of isolating and culturing CTCs for subsequent studies. PMID:24904216

Topography effect on soil organic carbon pool in Mediterranean natural areas (Southern Spain)

NASA Astrophysics Data System (ADS)

Parras-Alcántara, Luis; Lozan-García, Beatriz; Galán-Espejo, Arantxa

2014-05-01

Soils are important reservoirs of carbon, in fact, the primary terrestrial pool of organic carbon (OC) that accounts more than 75% of the Earth's terrestrial OC are the soils. In addition, soils have the ability to store carbon for a long time, playing a crucial role in the overall carbon cycle. In Spanish soils, climate, use and management are very influential in the carbon variability, mainly in the soils in Mediterranean dry climate, characterized by its low OC content, weak structure and readily degradable. Generally, the capacity to soil carbon store depends on abiotic factors such as the climate and mineralogical composition, but also depends on soil use and management. The principal factors that affect to forest soils carbon concentration and stock are: climate, landscape, landscape position, slope, latitude, chemical properties, texture and aggregation, anthropogenic factors, natural disturbance - wind, fire, drought, insects and diseases…etc. The soil organic matter (SOM), given by the total organic carbon content (TOC) is one of the main indicators of soil quality. Several studies have been carried out to estimate differences in SOC in relation to soil properties, land uses and climate. Although the impact of topographic aspect on soil properties is widely recognized, relatively few studies have been conducted to examine the role of aspect on SOC content globally. Studies indicate some variations in soil properties related to topographic. Topographic aspect induces local variation in temperature and precipitation solar radiation and relative humidity, which along with chemical and physical composition of the substrate, are the main regulators of decomposition rates of SOM. The spatial variation of soil properties is significantly influenced by some environmental factors such as topographic aspect that induced microclimate differences, topographic (landscape) positions, parent materials, and vegetation communities. Many attempts have been made to quantify the relationships between topographical parameters and soil properties. Researchers suggested some promising indicators such as pH, organic matter, exchangeable cations, total exchangeable basis, ratio of primary to secondary minerals, free oxides, carbonates and physical properties such as, particle size distribution, moisture content, color, bulk density and depth to specific horizon. If we considered SOC and TN how indicators of soil quality it is necessary to explain the relationship between the soil properties and topographic position, furthermore, is necessary establish indicator of the soil quality. In this regard, the stratification ratio (SR) is the most used. Soil development in this region is genetically complicated by three important soil forming factors: relief, fragility of this environment and absence of good vegetation (erosion by water) and the use and management (CT). Very little literature is published on soil variability and its relationship with topographic positions within such fragile environment. There are few reports on stratification of the SOC, TN and C:N ratio as affected by topography in natural areas. In this context, the objectives of this study were; assess the SOC in the soils, its vertical distribution in the profile and analyze the accumulation and SR of SOC along a topographic gradient and their relationship to soil depth in arid Mediterranean climate in Spain.

The contribution of the diffuse light component to the topographic effect on remotely sensed data

NASA Technical Reports Server (NTRS)

Justice, C.; Holben, B.

1980-01-01

The topographic effect is measured by the difference between the global radiance from inclined surfaces as a function of their orientation relative to the sensor position and light source. The short wave radiant energy incident on a surface is composed of direct sunlight, scattered skylight, and light reflected from surrounding terrain. The latter two components are commonly known as the diffuse component. The contribution of the diffuse light component to the topographic effect was examined and the significance of this diffuse component with respect to two direct radiance models was assessed. Diffuse and global spectral radiances were measured for a series of slopes and aspects of a uniform and surface in the red and photographic infrared parts of the spectrum, using a nadir pointing two channel handheld radiometer. The diffuse light was found to produce a topographic effect which varied from the topographic effect for direct light. The topographic effect caused by diffuse light was found to increase slightly with solar elevation and wavelength for the channels examined. The correlations between data derived from two simple direct radiance simulation models and the field data were not significantly affected when the diffuse component was removed from the radiances. Radiances from a 60 percent reflective surface, assuming no atmospheric path radiance, the diffuse light topographic effect contributed a maximum range of 3 pixel values in simulated LANDSAT data from all aspects with slopes up to 30 degrees.

Enhanced osteogenic differentiation of MC3T3-E1 cells on grid-topographic surface and evidence for involvement of YAP mediator.

PubMed

Zhang, Yingying; Gong, He; Sun, Yan; Huang, Yan; Fan, Yubo

2016-05-01

Numerous studies have shown that surface topography can promote cell-substrate associations and deeply influence cell fate. The intracellular mechanism or how micro- or nano-patterned extracellular signal is ultimately linked to activity of nuclear transcription factors remains unknown. It has been reported that Yes-associated protein (YAP) can respond to extracellular matrix microenvironment signals, thus regulates stem cell differentiation process. We propose that YAP may play a role in mediating the topography induced cell differentiation. To this end, we fabricated polydimethylsiloxane (PDMS) micropatterns with grid topology (GT) (3 μm pattern width, 2 μm pattern interval length, 7 μm pattern height); nonpatterned PDMS substrates were used as the planar controls. The MC3T3-E1 cells were then cultured on these surfaces, respectively, in osteogenic inducing medium. Cell differentiation in terms of osteogenesis related gene expression, protein levels, alkaline phosphatase activity and extracellular matrix mineralization was assessed. It was shown that the cells on GT surfaces had stronger osteogenesis capacity. In addition, expression level of YAP was increased when MC3T3-E1 cells grew on GT substrates, which was similar to the levels of osteogenic differentiation markers. It was also shown that YAP knockdown attenuated GT substrates-induced MC3T3-E1 differentiation, which reduced the osteogenic differentiation effect of the GT substrates. Collectively, our findings indicate that GT substrates-induced MC3T3-E1 differentiation may be associated with YAP. This paper provides new target points for transcriptional mechanism research of microenvironment induced cell differentiation and a useful approach to obtain more biofunctionalization scaffolds for tissue engineering. © 2016 Wiley Periodicals, Inc.

Surface topographical effects on the structural growth of thick sputtered metal and alloy coatings

NASA Technical Reports Server (NTRS)

Spalvins, T.; Brainard, W. A.

1974-01-01

Thick sputtered S-Monel, silver, and 304 stainless steel coatings were deposited on mica and metal substrates with various surface finishes to investigate the structural growth of the coating by scanning electron microscopy. The geometry and the surface structure of the nodules are characterized. Compositional changes within the coating were analyzed by X-ray dispersion microscopy. Defects in the surface finish (i.e., scratches, inclusions, etc.) act as preferential nucleation sites and form isolated and complex nodules and various surface overgrowths in the coating. The nodule boundaries are very vulnerable to chemical etching and these nodules do not disappear after full annealing. Further, they have undesirable effects on mechanical properties; cracks are initiated at the nodules when the coating is stressed by mechanical forces. These effects are illustrated by micrographs. Nodular growth within a coating can be minimized or eliminated by reducing the surface roughness.

Effect of surface roughness and subsurface damage on grazing-incidence x-ray scattering and specular reflectance.

PubMed

Lodha, G S; Yamashita, K; Kunieda, H; Tawara, Y; Yu, J; Namba, Y; Bennett, J M

1998-08-01

Grazing-incidence specular reflectance and near-specular scattering were measured at Al-K(alpha) (1.486-keV, 8.34-?) radiation on uncoated dielectric substrates whose surface topography had been measured with a scanning probe microscope and a mechanical profiler. Grazing-incidence specular reflectance was also measured on selected substrates at the Cu-K(alpha) (8.047-keV, 1.54-?) wavelength. Substrates included superpolished and conventionally polished fused silica; SiO(2) wafers; superpolished and precision-ground Zerodur; conventionally polished, float-polished, and precision-ground BK-7 glass; and superpolished and precision-ground silicon carbide. Roughnesses derived from x-ray specular reflectance and scattering measurements were in good agreement with topographic roughness values measured with a scanning probe microscope (atomic force microscope) and a mechanical profiler that included similar ranges of surface spatial wavelengths. The specular reflectance was also found to be sensitive to the density of polished surface layers and subsurface damage down to the penetration depth of the x rays. Density gradients and subsurface damage were found in the superpolished fused-silica and precision-ground Zerodur samples. These results suggest that one can nondestructively evaluate subsurface damage in transparent materials using grazing-incidence x-ray specular reflectance in the 1.5-8-keV range.

Characterization of a commercialized SERS-active substrate and its application to the identification of intact Bacillus endospores

NASA Astrophysics Data System (ADS)

Alexander, Troy A.; Le, Dianna M.

2007-06-01

Surface-enhanced-Raman-spectroscopy (SERS) can be made an attractive approach for the identification of Raman-active compounds and biological materials (i.e., toxins, viruses, or intact bacterial cells or spores) through development of reproducible, spatially uniform SERS-active substrates. Recently, reproducible (from substrate to substrate), spatially homogeneous (over large areas) SERS-active substrates have been commercialized and are now available in the marketplace. Scanning electron microscopy and high-resolution, tapping-mode atomic force microscopy have been used to analyze these novel plasmonic surfaces for topographical consistency. Additionally, we have assessed, by wavelength-tunable microreflectance spectrometry, the spatial distribution of the localized surface plasmon resonance (LSPR) across a single substrate surface as well as the LSPR λMAX variance from substrate to substrate. These analyses reveal that these surfaces are topologically uniform with small LSPR variance from substrate to substrate. Further, we have utilized these patterned surfaces to acquire SERS spectral signatures of four intact, genetically distinct Bacillus spore species cultivated under identical growth conditions. Salient spectral signature features make it possible to discriminate among these genetically distinct spores. Additionally, partial least squares, a multivariate calibration method, has been used to develop personal-computer-borne algorithms useful for classification of unknown spore samples based solely on SERS spectral signatures. To our knowledge, this is the first report detailing application of these commercially available SERS-active substrates to identification of intact Bacillus spores.

Visualizing cell extracellular matrix (ECM) deposited by cells cultured on aligned bacteriophage M13 thin films.

PubMed

Wu, Laying; Lee, L Andrew; Niu, Zhongwei; Ghoshroy, Soumitra; Wang, Qian

2011-08-02

Topographical features ranging from micro- to nanometers can affect cell orientation and migratory pathways, which are important factors in tissue engineering and tumor migration. In our previous study, a convective assembly of bacteriophage M13 resulted in thin films which could be used to control the alignment of cells. However, several questions regarding its underlying reasons to dictate cell alignment remained unanswered. Here, we further study the nanometer topographical features generated by the bacteriophage M13 crystalline film, which results in the alignment of the cells and extracellular matrix (ECM) proteins. Sequential imaging analyses at micro- and nanoscale levels of aligned cells and fibrillar matrix proteins were documented using scanning electron microscopy and immunofluorescence microscopy. As a result, we observed baby hamster kidney cells with higher degree of alignment on the ordered M13 substrates than NIH-3T3 fibroblasts, a difference which could be attributed to the intrinsic nature of the cells' production of ECM proteins. The results from this study provide a crucial insight into the topographical features of a biological thin film, which can be utilized to control the orientation of cells and surrounding ECM proteins.

Tilt Grain Boundary Topology Induced by Substrate Topography.

PubMed

Yu, Henry; Gupta, Nitant; Hu, Zhili; Wang, Kai; Srijanto, Bernadeta R; Xiao, Kai; Geohegan, David B; Yakobson, Boris I

2017-09-26

Synthesis of two-dimensional (2D) crystals is a topic of great current interest, since their chemical makeup, electronic, mechanical, catalytic, and optical properties are so diverse. A universal challenge, however, is the generally random formation of defects caused by various growth factors on flat surfaces. Here we show through theoretical analysis and experimental demonstration that nonplanar, curved-topography substrates permit the intentional and controllable creation of topological defects within 2D materials. We augment a common phase-field method by adding a geometric phase to track the crystal misorientation on a curved surface and to detect the formation of grain boundaries, especially when a growing monocrystal "catches its own tail" on a nontrivial topographical feature. It is specifically illustrated by simulated growth of a trigonal symmetry crystal on a conical-planar substrate, to match the experimental synthesis of WS 2 on silicon template, with satisfactory and in some cases remarkable agreement of theory predictions and experimental evidence.

Overview of topographic effects based on experimental observations: meaning, causes and possible interpretations

NASA Astrophysics Data System (ADS)

Massa, Marco; Barani, Simone; Lovati, Sara

2014-06-01

The paper presents an extensive review of topographic effects in seismology taking into account the knowledge of 40 yr of scientific literature. An overview of topographic effects based on experimental observations and numerical modelling is presented with the aim of highlighting meaning and causes of these phenomena as well as possible correlations between site response (fundamental frequency, amplification level) and geometrical (width and shape ratio of a relief) parameters. After a thorough summary of topographic effects, the paper focuses on five Italian sites whose seismic response is potentially affected by local morphology, as already evidenced by previous studies. In this study, seismic data recorded at these sites are analysed computing directional spectral ratios both in terms of horizontal to vertical spectral ratios (HVSRs) and, wherever possible, in terms of standard spectral ratios (SSRs). The analysis lead to the conclusion that wavefield tends to be polarized along a direction perpendicular to the main axis of a topographic irregularity, direction along which ground motion amplification is maximum. The final section of the article compares and contrasts different spectral ratio techniques in order to examine their effectiveness and reliability in detecting topographic effects. The examples discussed in the paper show that site responses based on HVSRs rather than SSR measurements could lead to misinterpretation of ground response results, both as concerns the definition of the site fundamental frequency and amplification level. Results and findings of this work will be used as starting point to discuss the influence of topographic effects on ground motion prediction equations and regulations for design. These topics will be discussed in the companion article.

Quantifying Spiral Ganglion Neurite and Schwann Behavior on Micropatterned Polymer Substrates.

PubMed

Cheng, Elise L; Leigh, Braden; Guymon, C Allan; Hansen, Marlan R

2016-01-01

The first successful in vitro experiments on the cochlea were conducted in 1928 by Honor Fell (Fell, Arch Exp Zellforsch 7(1):69-81, 1928). Since then, techniques for culture of this tissue have been refined, and dissociated primary culture of the spiral ganglion has become a widely accepted in vitro model for studying nerve damage and regeneration in the cochlea. Additionally, patterned substrates have been developed that facilitate and direct neural outgrowth. A number of automated and semi-automated methods for quantifying this neurite outgrowth have been utilized in recent years (Zhang et al., J Neurosci Methods 160(1):149-162, 2007; Tapias et al., Neurobiol Dis 54:158-168, 2013). Here, we describe a method to study the effect of topographical cues on spiral ganglion neurite and Schwann cell alignment. We discuss our microfabrication process, characterization of pattern features, cell culture techniques for both spiral ganglion neurons and spiral ganglion Schwann cells. In addition, we describe protocols for reducing fibroblast count, immunocytochemistry, and methods for quantifying neurite and Schwann cell alignment.

Effect of lattice-gas atoms on the adsorption behaviour of thioether molecules.

PubMed

Pan, Yi; Yang, Bing; Hulot, Catherine; Blechert, Siegfried; Nilius, Niklas; Freund, Hans-Joachim

2012-08-21

Using STM topographic imaging and spectroscopy, we have investigated the adsorption of two thioether molecules, 1,2-bis(phenylthio)benzene and (bis(3-phenylthio)-phenyl)sulfane, on noble and transition metal surfaces. The two substrates show nearly antipodal behaviour. Whereas complexes with one or two protruding centres are observed on Au(111), only flat and uniform ad-structures are found on NiAl(110). The difference is ascribed to the possibility of the thioethers to form metal-organic complexes by coordinating lattice-gas atoms on the Au(111), while only the pristine molecules adsorb on the alloy surface. The metal coordination in the first case is driven by the formation of strong Au-S bonds and enables the formation of characteristic monomer, dimer and chain-like structures of the thioethers, using the Au atoms as linkers. A similar mechanism is not available on the NiAl, because no lattice gas develops at this surface at room temperature. Our work demonstrates how surface properties, i.e. the availability of mobile ad-species, determine the interaction of organic molecules with metallic substrates.

Topographic Distributions of Emergent Trees in Tropical Forests of the Osa Peninsula, Costa Rica

NASA Astrophysics Data System (ADS)

Balzotti, C.; Asner, G. P.; Taylor, P.; Cole, R. J.; Osborne, B. B.; Cleveland, C. C.; Porder, S.; Townsend, A. R.

2015-12-01

Tropical rainforests are reservoirs of terrestrial carbon and biodiversity. Large and often emergent trees store disproportionately large amounts of aboveground carbon and greatly influence the structure and functioning of tropical rainforests. Despite their importance, controls on the abundance and distribution of emergent trees are largely unknown across tropical landscapes. Conventional field approaches are limited in their ability to characterize patterns in emergent trees across vast landscapes with varying environmental conditions and floristic composition. Here we used a high-resolution light detection and ranging (LiDAR) sensor, aboard the Carnegie Airborne Observatory Airborne Taxonomic Mapping System (CAO-AToMS), to examine the abundance and distribution of tall emergent tree canopies (ETC) relative to surrounding tree canopies (STC), across the Osa Peninsula, a geologically and topographically diverse region of Costa Rica. The abundance of ETC was clearly influenced by fine-scale topographic variation, with distribution patterns that held across a variety of geologic substrates. Specifically, the density of ETC was much greater on lower slopes and in valleys, compared to upper slopes and ridges. Furthermore, using the CAO high-fidelity imaging spectrometer, ETC had a different spectral signature than that of the STC. Most notably, ETC had lower foliar N than STC, which was verified with an independent field survey of canopy leaf chemistry. The underlying mechanisms to explain the topographic-dependence of ETCs and linkages to canopy N are unknown, and remain an important area of research.

LIDAR optical rugosity of coral reefs in Biscayne National Park, Florida

USGS Publications Warehouse

Brock, J.C.; Wright, C.W.; Clayton, T.D.; Nayegandhi, A.

2004-01-01

The NASA Experimental Advanced Airborne Research Lidar (EAARL), a temporal waveform-resolving, airborne, green wavelength LIDAR (light detection and ranging), is designed to measure the submeter-scale topography of shallow reef substrates. Topographic variability is a prime component of habitat complexity, an ecological factor that both expresses and controls the abundance and distribution of many reef organisms. Following the acquisition of EAARL coverage over both mid-platform patch reefs and shelf-margin bank reefs within Biscayne National Park in August 2002, EAARL-based optical indices of topographic variability were evaluated at 15 patch reef and bank reef sites. Several sites were selected to match reefs previously evaluated in situ along underwater video and belt transects. The analysis used large populations of submarine topographic transects derived from the examination of closely spaced laser spot reflections along LIDAR raster scans. At all 15 sites, each LIDAR transect was evaluated separately to determine optical rugosity (Rotran), and the average elevation difference between adjacent points (Av(??E ap)). Further, the whole-site mean and maximum values of Ro tran and Av(??Eap) for the entire population of transects at each analysis site, along with their standard deviations, were calculated. This study revealed that the greater habitat complexity of inshore patch reefs versus outer bank reefs results in relative differences in topographic complexity that can be discerned in the laser returns. Accordingly, LIDAR sensing of optical rugosity is proposed as a complementary new technique for the rapid assessment of shallow coral reefs. ?? Springer-Verlag 2004.

Fast synthesis of topographic mask effects based on rigorous solutions

NASA Astrophysics Data System (ADS)

Yan, Qiliang; Deng, Zhijie; Shiely, James

2007-10-01

Topographic mask effects can no longer be ignored at technology nodes of 45 nm, 32 nm and beyond. As feature sizes become comparable to the mask topographic dimensions and the exposure wavelength, the popular thin mask model breaks down, because the mask transmission no longer follows the layout. A reliable mask transmission function has to be derived from Maxwell equations. Unfortunately, rigorous solutions of Maxwell equations are only manageable for limited field sizes, but impractical for full-chip optical proximity corrections (OPC) due to the prohibitive runtime. Approximation algorithms are in demand to achieve a balance between acceptable computation time and tolerable errors. In this paper, a fast algorithm is proposed and demonstrated to model topographic mask effects for OPC applications. The ProGen Topographic Mask (POTOMAC) model synthesizes the mask transmission functions out of small-sized Maxwell solutions from a finite-difference-in-time-domain (FDTD) engine, an industry leading rigorous simulator of topographic mask effect from SOLID-E. The integral framework presents a seamless solution to the end user. Preliminary results indicate the overhead introduced by POTOMAC is contained within the same order of magnitude in comparison to the thin mask approach.

Tuning Material Properties of Oxides and Nitrides by Substrate Biasing during Plasma-Enhanced Atomic Layer Deposition on Planar and 3D Substrate Topographies.

PubMed

Faraz, Tahsin; Knoops, Harm C M; Verheijen, Marcel A; van Helvoirt, Cristian A A; Karwal, Saurabh; Sharma, Akhil; Beladiya, Vivek; Szeghalmi, Adriana; Hausmann, Dennis M; Henri, Jon; Creatore, Mariadriana; Kessels, Wilhelmus M M

2018-04-18

Oxide and nitride thin-films of Ti, Hf, and Si serve numerous applications owing to the diverse range of their material properties. It is therefore imperative to have proper control over these properties during materials processing. Ion-surface interactions during plasma processing techniques can influence the properties of a growing film. In this work, we investigated the effects of controlling ion characteristics (energy, dose) on the properties of the aforementioned materials during plasma-enhanced atomic layer deposition (PEALD) on planar and 3D substrate topographies. We used a 200 mm remote PEALD system equipped with substrate biasing to control the energy and dose of ions by varying the magnitude and duration of the applied bias, respectively, during plasma exposure. Implementing substrate biasing in these forms enhanced PEALD process capability by providing two additional parameters for tuning a wide range of material properties. Below the regimes of ion-induced degradation, enhancing ion energies with substrate biasing during PEALD increased the refractive index and mass density of TiO x and HfO x and enabled control over their crystalline properties. PEALD of these oxides with substrate biasing at 150 °C led to the formation of crystalline material at the low temperature, which would otherwise yield amorphous films for deposition without biasing. Enhanced ion energies drastically reduced the resistivity of conductive TiN x and HfN x films. Furthermore, biasing during PEALD enabled the residual stress of these materials to be altered from tensile to compressive. The properties of SiO x were slightly improved whereas those of SiN x were degraded as a function of substrate biasing. PEALD on 3D trench nanostructures with biasing induced differing film properties at different regions of the 3D substrate. On the basis of the results presented herein, prospects afforded by the implementation of this technique during PEALD, such as enabling new routes for topographically selective deposition on 3D substrates, are discussed.

Topographical effects of climate dataset and their impacts on the estimation of regional net primary productivity

NASA Astrophysics Data System (ADS)

Sun, L. Qing; Feng, Feng X.

2014-11-01

In this study, we first built and compared two different climate datasets for Wuling mountainous area in 2010, one of which considered topographical effects during the ANUSPLIN interpolation was referred as terrain-based climate dataset, while the other one did not was called ordinary climate dataset. Then, we quantified the topographical effects of climatic inputs on NPP estimation by inputting two different climate datasets to the same ecosystem model, the Boreal Ecosystem Productivity Simulator (BEPS), to evaluate the importance of considering relief when estimating NPP. Finally, we found the primary contributing variables to the topographical effects through a series of experiments given an overall accuracy of the model output for NPP. The results showed that: (1) The terrain-based climate dataset presented more reliable topographic information and had closer agreements with the station dataset than the ordinary climate dataset at successive time series of 365 days in terms of the daily mean values. (2) On average, ordinary climate dataset underestimated NPP by 12.5% compared with terrain-based climate dataset over the whole study area. (3) The primary climate variables contributing to the topographical effects of climatic inputs for Wuling mountainous area were temperatures, which suggest that it is necessary to correct temperature differences for estimating NPP accurately in such a complex terrain.

Changes in Cortical Activity During Real and Imagined Movements: an ERP Study

PubMed Central

Machado, Sergio; Arias-Carrión, Oscar; Paes, Flávia; Ribeiro, Pedro; Cagy, Mauricio; Piedade, Roberto; Almada, Leonardo Ferreira; Anghinah, Renato; Basile, Luis; Moro, Maria Francesca; Orsini, Marco; Silva, Julio Guilherme; Silva, Adriana Cardoso; Nardi, Antonio E.

2013-01-01

This study aims to compare the topographic distribution of cortical activation between real and imagined movement through event-related potential (ERP). We are specifically interested in identifying, the topographic distribution of activated areas, the intensity of activated areas, and the temporal occurrence of these activations on preparation and motor response phases. Twelve healthy and right handed subjects were instructed to perform a task under real and imagery conditions. The task was performed simultaneously to electroencephalographic (EEG) recording. When compared the conditions, we found a statistically significant difference in favor of real condition revealed by performing an unpaired t-test with multiple corrections of Bonferroni, demonstrating negative activity on electrode C3 and positive activity on the electrode C4 only in motor response phase. These findings revealed similar functional connections established during real and imagery conditions, suggesting that there are common neural substrate and similar properties of functional integration shared by conditions. PMID:24358049

Changes in Cortical Activity During Real and Imagined Movements: an ERP Study.

PubMed

Machado, Sergio; Arias-Carrión, Oscar; Paes, Flávia; Ribeiro, Pedro; Cagy, Mauricio; Piedade, Roberto; Almada, Leonardo Ferreira; Anghinah, Renato; Basile, Luis; Moro, Maria Francesca; Orsini, Marco; Silva, Julio Guilherme; Silva, Adriana Cardoso; Nardi, Antonio E

2013-11-15

This study aims to compare the topographic distribution of cortical activation between real and imagined movement through event-related potential (ERP). We are specifically interested in identifying, the topographic distribution of activated areas, the intensity of activated areas, and the temporal occurrence of these activations on preparation and motor response phases. Twelve healthy and right handed subjects were instructed to perform a task under real and imagery conditions. The task was performed simultaneously to electroencephalographic (EEG) recording. When compared the conditions, we found a statistically significant difference in favor of real condition revealed by performing an unpaired t-test with multiple corrections of Bonferroni, demonstrating negative activity on electrode C3 and positive activity on the electrode C4 only in motor response phase. These findings revealed similar functional connections established during real and imagery conditions, suggesting that there are common neural substrate and similar properties of functional integration shared by conditions.

Nanostructural characterization of amorphous diamondlike carbon films

DOE Office of Scientific and Technical Information (OSTI.GOV)

SIEGAL,MICHAEL P.; TALLANT,DAVID R.; MARTINEZ-MIRANDA,L.J.

2000-01-27

Nanostructural characterization of amorphous diamondlike carbon (a-C) films grown on silicon using pulsed-laser deposition (PLD) is correlated to both growth energetic and film thickness. Raman spectroscopy and x-ray reflectivity probe both the topological nature of 3- and 4-fold coordinated carbon atom bonding and the topographical clustering of their distributions within a given film. In general, increasing the energetic of PLD growth results in films becoming more ``diamondlike'', i.e. increasing mass density and decreasing optical absorbance. However, these same properties decrease appreciably with thickness. The topology of carbon atom bonding is different for material near the substrate interface compared to materialmore » within the bulk portion of an a-C film. A simple model balancing the energy of residual stress and the free energies of resulting carbon topologies is proposed to provide an explanation of the evolution of topographical bonding clusters in a growing a-C film.« less

Simultaneous topographic and amperometric membrane mapping using an AFM probe integrated biosensor.

PubMed

Stanca, Sarmiza Elena; Csaki, Andrea; Urban, Matthias; Nietzsche, Sandor; Biskup, Christoph; Fritzsche, Wolfgang

2011-02-15

The investigation of the plasma membrane with intercorrelated multiparameter techniques is a prerequisite for understanding its function. Presented here, is a simultaneous electrochemical and topographic study of the cell membrane using a miniaturized amperometric enzymatic biosensor. The fabrication of this biosensor is also reported. The biosensor combines a scanning force microscopy (AFM) gold-coated cantilever and an enzymatic transducer layer of peroxidases (PODs). When these enzymes are brought in contact with the substrate, the specific redox reaction produces an electric current. The intensity of this current is detected simultaneously with the surface imaging. For sensor characterization, hydroquinone-2-carboxylic acid (HQ) is selected as an intrinsic source of H(2)O(2). HQ has been electrochemically regenerated by the reduction of antraquinone-2-carboxylic acid (AQ). The biosensor reaches the steady state value of the current intensity in 1 ± 0.2s. Copyright © 2010 Elsevier B.V. All rights reserved.

Templated assembly of Co-Pt nanoparticles via thermal and laser-induced dewetting of bilayer metal films.

PubMed

Oh, Yong-Jun; Kim, Jung-Hwan; Thompson, Carl V; Ross, Caroline A

2013-01-07

Templated dewetting of a Co/Pt metal bilayer film on a topographic substrate was used to assemble arrays of Co-Pt alloy nanoparticles, with highly uniform particle size, shape and notably composition compared to nanoparticles formed on an untemplated substrate. Solid-state and liquid-state dewetting processes, using furnace annealing and laser irradiation respectively, were compared. Liquid state dewetting produced more uniform, conformal nanoparticles but they had a polycrystalline disordered fcc structure and relatively low magnetic coercivity. In contrast, solid state dewetting enabled formation of magnetically hard, ordered L1(0) Co-Pt single-crystal particles with coercivity >12 kOe. Furnace annealing converted the nanoparticles formed by liquid state dewetting into the L1(0) phase.

Method and Apparatus for the Quantification of Particulate Adhesion Forces on Various Substrates

NASA Technical Reports Server (NTRS)

Wohl, Christopher J.; Atkins, Brad M.; Connell, John W.

2011-01-01

Mitigation strategies for lunar dust adhesion have typically been limited to qualitative analysis. This technical memorandum describes the generation and operation of an adhesion testing device capable of quantitative assessment of adhesion forces between particulates and substrates. An aerosolization technique is described to coat a surface with a monolayer of particulates. Agitation of this surface, via sonication, causes particles to dislodge and be gravitationally fed into an optical particle counter. Experimentally determined adhesion force values are compared to forces calculated from van der Waals interactions and are used to calculate the work of adhesion using Johnson-Kendall-Roberts (JKR) theory. Preliminary results indicate that a reduction in surface energy and available surface area, through topographical modification, improve mitigation of particulate adhesion.

Impacts of Topographic Shading on Surface Energy Balance of High Mountain Asia Glaciers

NASA Astrophysics Data System (ADS)

Olson, M.; Rupper, S.

2016-12-01

Topographic shading plays an important role in the energy balance of valley glaciers. While previous studies incorporate shading of varying complexity in surface energy balance models, to date, no large-scale studies have explored in depth the effects of topographic shading on glacier surface energy balance, and how these vary geographically within High Mountain Asia (HMA). Here we develop a model to examine the variability in potential insolation during the summer melt season using the ASTER GDEM and multi-hour solar geometry to simulate topographic shading on an idealized glacier. Shading is calculated in simulations utilizing a range of slopes, aspects, and latitudes. We test glacier mass balance sensitivity to these parameters for a suite of glaciers throughout HMA. Our results show that shading impacts on glaciers in HMA are highly variable across different geographic regions, but that they are largely predictable based on topographic characteristics such as slope and aspect. For example, we find in regions with steep topography and high relief that shading frequently dominates in the ablation zone rather than the accumulation zone, contrary to the findings of some previous studies. In these regions, topographic shading may play a more significant role in glacier energy balance. These results will better define the effects of topographic shading on surface energy balance, and improve model accuracy within HMA. Additionally, this topographic shading model provides a framework to quantify how shading effects vary for advancing or retreating glaciers as they respond to fluctuations in climate across HMA.

Sensitivity of the Enhanced Vegetation Index (EVI) and Normalized Difference Vegetation Index (NDVI) to Topographic Effects: A Case Study in High-density Cypress Forest.

PubMed

Matsushita, Bunkei; Yang, Wei; Chen, Jin; Onda, Yuyichi; Qiu, Guoyu

2007-11-05

Vegetation indices play an important role in monitoring variations in vegetation.The Enhanced Vegetation Index (EVI) proposed by the MODIS Land Discipline Groupand the Normalized Difference Vegetation Index (NDVI) are both global-based vegetationindices aimed at providing consistent spatial and temporal information regarding globalvegetation. However, many environmental factors such as atmospheric conditions and soilbackground may produce errors in these indices. The topographic effect is another veryimportant factor, especially when the indices are used in areas of rough terrain. In thispaper, we theoretically analyzed differences in the topographic effect on the EVI and theNDVI based on a non-Lambertian model and two airborne-based images acquired from amountainous area covered by high-density Japanese cypress plantation were used as a casestudy. The results indicate that the soil adjustment factor "L" in the EVI makes it moresensitive to topographic conditions than is the NDVI. Based on these results, we stronglyrecommend that the topographic effect should be removed in the reflectance data beforethe EVI was calculated-as well as from other vegetation indices that similarly include a term without a band ratio format (e.g., the PVI and SAVI)-when these indices are used in the area of rough terrain, where the topographic effect on the vegetation indices having only a band ratio format (e.g., the NDVI) can usually be ignored.

Topographical maps as complex networks

NASA Astrophysics Data System (ADS)

da Fontoura Costa, Luciano; Diambra, Luis

2005-02-01

The neuronal networks in the mammalian cortex are characterized by the coexistence of hierarchy, modularity, short and long range interactions, spatial correlations, and topographical connections. Particularly interesting, the latter type of organization implies special demands on developing systems in order to achieve precise maps preserving spatial adjacencies, even at the expense of isometry. Although the object of intensive biological research, the elucidation of the main anatomic-functional purposes of the ubiquitous topographical connections in the mammalian brain remains an elusive issue. The present work reports on how recent results from complex network formalism can be used to quantify and model the effect of topographical connections between neuronal cells over the connectivity of the network. While the topographical mapping between two cortical modules is achieved by connecting nearest cells from each module, four kinds of network models are adopted for implementing intramodular connections, including random, preferential-attachment, short-range, and long-range networks. It is shown that, though spatially uniform and simple, topographical connections between modules can lead to major changes in the network properties in some specific cases, depending on intramodular connections schemes, fostering more effective intercommunication between the involved neuronal cells and modules. The possible implications of such effects on cortical operation are discussed.

Molecular plasma deposition: biologically inspired nanohydroxyapatite coatings on anodized nanotubular titanium for improving osteoblast density

PubMed Central

Balasundaram, Ganesan; Storey, Daniel M; Webster, Thomas J

2015-01-01

In order to begin to prepare a novel orthopedic implant that mimics the natural bone environment, the objective of this in vitro study was to synthesize nanocrystalline hydroxyapatite (NHA) and coat it on titanium (Ti) using molecular plasma deposition (MPD). NHA was synthesized through a wet chemical process followed by a hydrothermal treatment. NHA and micron sized hydroxyapatite (MHA) were prepared by processing NHA coatings at 500°C and 900°C, respectively. The coatings were characterized before and after sintering using scanning electron microscopy, atomic force microscopy, and X-ray diffraction. The results revealed that the post-MPD heat treatment of up to 500°C effectively restored the structural and topographical integrity of NHA. In order to determine the in vitro biological responses of the MPD-coated surfaces, the attachment and spreading of osteoblasts (bone-forming cells) on the uncoated, NHA-coated, and MHA-coated anodized Ti were investigated. Most importantly, the NHA-coated substrates supported a larger number of adherent cells than the MHA-coated and uncoated substrates. The morphology of these cells was assessed by scanning electron microscopy and the observed shapes were different for each substrate type. The present results are the first reports using MPD in the framework of hydroxyapatite coatings on Ti to enhance osteoblast responses and encourage further studies on MPD-based hydroxyapatite coatings on Ti for improved orthopedic applications. PMID:25609958

Controlling droplet spreading with topography

NASA Astrophysics Data System (ADS)

Kant, P.; Hazel, A. L.; Dowling, M.; Thompson, A. B.; Juel, A.

2017-09-01

We present an experimental system that can be used to study the dynamics of a picoliter droplet (in-flight radius of 12.2 μ m ) as it spreads over substrates with topographic variations. We concentrate on the spreading of a droplet within a recessed stadium-shaped pixel, with applications to the manufacture of polymer organic light-emitting-diode displays, and find that the sloping sidewall of the pixel can either locally enhance or hinder spreading depending on whether the topography gradient ahead of the contact line is positive or negative, respectively. Locally enhanced spreading occurs via the formation of thin pointed rivulets along the sidewalls of the pixel through a mechanism similar to capillary rise in sharp corners. We demonstrate that a simplified model involving quasistatic surface-tension effects within the framework of a thin-film approximation combined with an experimentally measured dynamic spreading law, relating the speed of the contact line to the contact angle, provides excellent predictions of the evolving liquid morphologies. A key feature of the liquid-substrate interaction studied here is the presence of significant contact angle hysteresis, which enables the persistence of noncircular fluid morphologies. We also show that the spreading law for an advancing contact line can be adequately approximated by a Cox-Voinov law for the majority of the evolution. The model does not include viscous effects in the bulk of the droplet and hence the time scales for the propagation of the thin pointed rivulets are not captured. Nonetheless, this simple model can be used very effectively to predict the areas covered by the liquid and may serve as a useful design tool for systems that require precise control of liquid on substrates.

Polycrystalline silicon on tungsten substrates

NASA Technical Reports Server (NTRS)

Bevolo, A. J.; Schmidt, F. A.; Shanks, H. R.; Campisi, G. J.

1979-01-01

Thin films of electron-beam-vaporized silicon were deposited on fine-grained tungsten substrates under a pressure of about 1 x 10 to the -10th torr. Mass spectra from a quadrupole residual-gas analyzer were used to determine the partial pressure of 13 residual gases during each processing step. During separate silicon depositions, the atomically clean substrates were maintained at various temperatures between 400 and 780 C, and deposition rates were between 20 and 630 A min. Surface contamination and interdiffusion were monitored by in situ Auger electron spectrometry before and after cleaning, deposition, and annealing. Auger depth profiling, X-ray analysis, and SEM in the topographic and channeling modes were utilized to characterize the samples with respect to silicon-metal interface, interdiffusion, silicide formation, and grain size of silicon. The onset of silicide formation was found to occur at approximately 625 C. Above this temperature tungsten silicides were formed at a rate faster than the silicon deposition. Fine-grain silicon films were obtained at lower temperatures.

Comparison of Topographic Effects between the Enhanced Vegetation Index (EVI) and Normalized Difference Vegetation Index (NDVI)

NASA Astrophysics Data System (ADS)

Matsushita, B.; Yang, W.; Chen, J.; Onda, Y.

2007-12-01

Vegetation indices play an important role in monitoring variations in vegetation. The Enhanced Vegetation Index (EVI) proposed by the MODIS Land Discipline Group and the Normalized Difference Vegetation Index (NDVI) are both global-based vegetation indices aimed at providing consistent spatial and temporal information regarding global vegetation. However, many environmental factors such as atmospheric conditions and soil background may produce errors in these indices. The topographic effect is another very important factor, especially when the indices are used in areas of rough terrain. In this paper, we analyzed differences in the topographic effect between the EVI and the NDVI based on a non-Lambertian model and using two airborne-based images with a spatial resolution of 1.5m acquired from a mountainous area covered by a homogeneous Japanese cypress plantation. The results indicate that the soil adjustment factor "L" in the EVI makes it more sensitive to topographic conditions than is the NDVI. Based on these results, we strongly recommend that the topographic effect be removed from the EVI--as well as from other vegetation indices that similarly include a term without a band ratio format (e.g., the PVI and SAVI)--when these indices are used in conjunction with a high spatial resolution image of an area of rough terrain, where the topographic effect on the vegetarian indices having only a band ratio format (e.g., the NDVI) can usually be ignored.

Teaching Topographic Map Skills and Geomorphology Concepts with Google Earth in a One-Computer Classroom

ERIC Educational Resources Information Center

Hsu, Hsiao-Ping; Tsai, Bor-Wen; Chen, Che-Ming

2018-01-01

Teaching high-school geomorphological concepts and topographic map reading entails many challenges. This research reports the applicability and effectiveness of Google Earth in teaching topographic map skills and geomorphological concepts, by a single teacher, in a one-computer classroom. Compared to learning via a conventional instructional…

Reduction of Topographic Effect for Curve Number Estimated from Remotely Sensed Imagery

NASA Astrophysics Data System (ADS)

Zhang, Wen-Yan; Lin, Chao-Yuan

2016-04-01

The Soil Conservation Service Curve Number (SCS-CN) method is commonly used in hydrology to estimate direct runoff volume. The CN is the empirical parameter which corresponding to land use/land cover, hydrologic soil group and antecedent soil moisture condition. In large watersheds with complex topography, satellite remote sensing is the appropriate approach to acquire the land use change information. However, the topographic effect have been usually found in the remotely sensed imageries and resulted in land use classification. This research selected summer and winter scenes of Landsat-5 TM during 2008 to classified land use in Chen-You-Lan Watershed, Taiwan. The b-correction, the empirical topographic correction method, was applied to Landsat-5 TM data. Land use were categorized using K-mean classification into 4 groups i.e. forest, grassland, agriculture and river. Accuracy assessment of image classification was performed with national land use map. The results showed that after topographic correction, the overall accuracy of classification was increased from 68.0% to 74.5%. The average CN estimated from remotely sensed imagery decreased from 48.69 to 45.35 where the average CN estimated from national LULC map was 44.11. Therefore, the topographic correction method was recommended to normalize the topographic effect from the satellite remote sensing data before estimating the CN.

Effects of topographic position and geology on shaking damage to residential wood-framed structures during the 2003 San Simeon earthquake, western San Luis obispo county, California

USGS Publications Warehouse

McCrink, T.P.; Wills, C.J.; Real, C.R.; Manson, M.W.

2010-01-01

A statistical evaluation of shaking damage to wood-framed houses caused by the 2003 M6.5 San Simeon earthquake indicates that both the rate and severity of damage, independent of structure type, are significantly greater on hilltops compared to hill slopes when underlain by Cretaceous or Tertiary sedimentary rocks. This increase in damage is interpreted to be the result of topographic amplification. An increase in the damage rate is found for all structures built on Plio-Pleistocene rocks independent of topographic position, and this is interpreted to be the result of amplified shaking caused by geologic site response. Damage rate and severity to houses built on Tertiary rocks suggest that amplification due to both topographic position and geologic site response may be occurring in these rocks, but effects from other topographic parameters cannot be ruled out. For all geologic and topographic conditions, houses with raised foundations are more frequently damaged than those with slab foundations. However, the severity of damage to houses on raised foundations is only significantly greater for those on hill slopes underlain by Tertiary rocks. Structures with some damage-resistant characteristics experienced greater damage severity on hilltops, suggesting a spectral response to topographic amplification. ?? 2010, Earthquake Engineering Research Institute.

Nanowell-Trapped Charged Ligand-Bearing Nanoparticle Surfaces – A Novel Method of Enhancing Flow-Resistant Cell Adhesion

PubMed Central

Tran, Phat L.; Gamboa, Jessica R.; McCracken, Katherine E.; Riley, Mark R.

2014-01-01

Assuring cell adhesion to an underlying biomaterial surface is vital in implant device design and tissue engineering, particularly under circumstances where cells are subjected to potential detachment from overriding fluid flow. Cell-substrate adhesion is a highly regulated process involving the interplay of mechanical properties, surface topographic features, electrostatic charge, and biochemical mechanisms. At the nanoscale level the physical properties of the underlying substrate are of particular importance in cell adhesion. Conventionally, natural, pro-adhesive, and often thrombogenic, protein biomaterials are frequently utilized to facilitate adhesion. In the present study nanofabrication techniques are utilized to enhance the biological functionality of a synthetic polymer surface, polymethymethacrylate, with respect to cell adhesion. Specifically we examine the effect on cell adhesion of combining: 1. optimized surface texturing, 2. electrostatic charge and 3. cell adhesive ligands, uniquely assembled on the substrata surface, as an ensemble of nanoparticles trapped in nanowells. Our results reveal that the ensemble strategy leads to enhanced, more than simply additive, endothelial cell adhesion under both static and flow conditions. This strategy may be of particular utility for enhancing flow-resistant endothelialization of blood-contacting surfaces of cardiovascular devices subjected to flow-mediated shear. PMID:23225491

Real-time sensing of epithelial cell-cell and cell-substrate interactions by impedance spectroscopy on porous substrates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mondal, D.; RoyChaudhuri, C., E-mail: chirosreepram@yahoo.com; Pal, D.

2015-07-28

Oxidized porous silicon (PS) is a common topographical biocompatible substrate that potentially provides a distinct in vitro environment for better understanding of in vivo behavior. But in the reported studies on oxidized PS, cell-cell and cell-substrate interactions have been detected only by fluorescent labeling. This paper is the first attempt to investigate real-time sensing of these interactions on HaCaT cells by label-free impedance spectroscopy on oxidized PS of two pore diameters (50 and 500 nm). One of the major requirements for successful impedance spectroscopy measurement is to restrict the channeling of electric field lines through the pores. To satisfy this criterion,more » we have designed the pore depths after analyzing the penetration of the medium by using computational fluid dynamics simulation. A distributed electrical model was also developed for estimating the various cellular attributes by considering a pseudorandom distribution of pores. It is observed from the impedance measurements and from the model that the proliferation rate increases for 50 nm pores but decreases for 500 nm pores compared to that for planar substrates. The rate of decrease in cell substrate separation (h) in the initial stage is more than the rate of increase in cell-cell junction resistance (R{sub b}) corresponding to the initial adhesion phase of cells. It is observed that R{sub b} and h are higher for 50 nm pores than those for planar substrates, corresponding to the fact that substrates more conducive toward cell adhesion encourage cell-cell interactions than direct cell-substrate interactions. Thus, the impedance spectroscopy coupled with the proposed theoretical framework for PS substrates can sense and quantify the cellular interactions.« less

Seabed maps showing topography, ruggedness, backscatter intensity, sediment mobility, and the distribution of geologic substrates in Quadrangle 6 of the Stellwagen Bank National Marine Sanctuary Region offshore of Boston, Massachusetts

USGS Publications Warehouse

Valentine, Page C.; Gallea, Leslie B.

2015-11-10

The U.S. Geological Survey (USGS), in cooperation with the National Oceanic and Atmospheric Administration's National Marine Sanctuary Program, has conducted seabed mapping and related research in the Stellwagen Bank National Marine Sanctuary (SBNMS) region since 1993. The area is approximately 3,700 square kilometers (km2) and is subdivided into 18 quadrangles. Seven maps, at a scale of 1:25,000, of quadrangle 6 (211 km2) depict seabed topography, backscatter, ruggedness, geology, substrate mobility, mud content, and areas dominated by fine-grained or coarse-grained sand. Interpretations of bathymetric and seabed backscatter imagery, photographs, video, and grain-size analyses were used to create the geology-based maps. In all, data from 420 stations were analyzed, including sediment samples from 325 locations. The seabed geology map shows the distribution of 10 substrate types ranging from boulder ridges to immobile, muddy sand to mobile, rippled sand. Mapped substrate types are defined on the basis of sediment grain-size composition, surface morphology, sediment layering, the mobility or immobility of substrate surfaces, and water depth range. This map series is intended to portray the major geological elements (substrates, topographic features, processes) of environments within quadrangle 6. Additionally, these maps will be the basis for the study of the ecological requirements of invertebrate and vertebrate species that utilize these substrates and guide seabed management in the region.

Simultaneous Nanoscale Surface Charge and Topographical Mapping.

PubMed

Perry, David; Al Botros, Rehab; Momotenko, Dmitry; Kinnear, Sophie L; Unwin, Patrick R

2015-07-28

Nanopipettes are playing an increasingly prominent role in nanoscience, for sizing, sequencing, delivery, detection, and mapping interfacial properties. Herein, the question of how to best resolve topography and surface charge effects when using a nanopipette as a probe for mapping in scanning ion conductance microscopy (SICM) is addressed. It is shown that, when a bias modulated (BM) SICM scheme is used, it is possible to map the topography faithfully, while also allowing surface charge to be estimated. This is achieved by applying zero net bias between the electrode in the SICM tip and the one in bulk solution for topographical mapping, with just a small harmonic perturbation of the potential to create an AC current for tip positioning. Then, a net bias is applied, whereupon the ion conductance current becomes sensitive to surface charge. Practically this is optimally implemented in a hopping-cyclic voltammetry mode where the probe is approached at zero net bias at a series of pixels across the surface to reach a defined separation, and then a triangular potential waveform is applied and the current response is recorded. Underpinned with theoretical analysis, including finite element modeling of the DC and AC components of the ionic current flowing through the nanopipette tip, the powerful capabilities of this approach are demonstrated with the probing of interfacial acid-base equilibria and high resolution imaging of surface charge heterogeneities, simultaneously with topography, on modified substrates.

Topographical Control of Ocular Cell Types for Tissue Engineering

PubMed Central

McHugh, Kevin J.; Saint-Geniez, Magali; Tao, Sarah L.

2014-01-01

Visual impairment affects over 285 million people worldwide and has a major impact on an individual’s quality of life. Tissue engineering has the potential to increase quality of life for many of these patients by preventing vision loss or restoring vision using cell-based therapies. However, these strategies will require an understanding of the microenvironmental factors that influence cell behavior. The eye is a well-organized organ whose structural complexity is essential for proper function. Interactions between ocular cells and their highly ordered extracellular matrix are necessary for maintaining key tissue properties including corneal transparency and retinal lamination. Therefore, it is not surprising that culturing these cells in vitro on traditional flat substrates result in irregular morphology. Instead, topographically patterned biomaterials better mimic native extracellular matrix and have been shown to elicit in vivo-like morphology and gene expression which is essential for tissue engineering. Herein we review multiple methods for producing well-controlled topography and discuss optimal biomaterial scaffold design for cells of the cornea, retina, and lens. PMID:23744715

Mantle flow tectonics - The influence of a ductile lower crust and implications for the formation of topographic uplands on Venus

NASA Technical Reports Server (NTRS)

Bindschadler, Duane L.; Parmentier, E. Marc

1990-01-01

The crust and mantle of Venus can be represented by a model of a layered structure stratified in both density and viscosity. This structure consists of a brittle-elastic upper crustal layer; a ductile weaker crustal layer; a strong upper mantle layer, about 10 percent denser than the crust; and a weaker substrate, representing the portion of the mantle in which convective flow occurs which is a primary source of large-scale topographic and tectonic features. This paper examines the interactions between these four layers and the mantle flow driven by thermal or compositional variations. Solutions are found for a flow driven by a buoyancy-force distribution within the mantle and by relief at the surface and crust-mantle boundary. It is shown that changes in crustal thickness are driven by vertical normal stresses due to mantle flow and by shear coupling of horizontal mantle flow into the crust.

Neural components of topographical representation

PubMed Central

Aguirre, Geoffrey K.; Zarahn, Eric; D’Esposito, Mark

1998-01-01

Studies of patients with focal brain damage suggest that topographical representation is subserved by dissociable neural subcomponents. This article offers a condensed review of the literature of “topographical disorientation” and describes several functional MRI studies designed to test hypotheses generated by that review. Three hypotheses are considered: (i) The parahippocampal cortex is critically involved in the acquisition of exocentric spatial information in humans; (ii) separable, posterior, dorsal, and ventral cortical regions subserve the perception and long term representation of position and identity, respectively, of landmarks; and (iii) there is a distinct area of the ventral occipitotemporal cortex that responds maximally to building stimuli and may play a role in the perception of salient landmarks. We conclude with a discussion of the inferential limitations of neuroimaging and lesion studies. It is proposed that combining these two approaches allows for inferences regarding the computational involvement of a neuroanatomical substrate in a given cognitive process although neither method can strictly support this conclusion alone. PMID:9448249

Nanotopographic Substrates of Poly (Methyl Methacrylate) Do Not Strongly Influence the Osteogenic Phenotype of Mesenchymal Stem Cells In Vitro

PubMed Central

Janson, Isaac A.; Kong, Yen P.; Putnam, Andrew J.

2014-01-01

The chemical, mechanical, and topographical features of the extracellular matrix (ECM) have all been documented to influence cell adhesion, gene expression, migration, proliferation, and differentiation. Topography plays a key role in the architecture and functionality of various tissues in vivo, thus raising the possibility that topographic cues can be instructive when incorporated into biomaterials for regenerative applications. In the literature, there are discrepancies regarding the potential roles of nanotopography to enhance the osteogenic phenotype of mesenchymal stem cells (MSC). In this study, we used thin film substrates of poly(methyl methacrylate) (PMMA) with nanoscale gratings to investigate the influence of nanotopography on the osteogenic phenotype of MSCs, focusing in particular on their ability to produce mineral similar to native bone. Topography influenced focal adhesion size and MSC alignment, and enhanced MSC proliferation after 14 days of culture. However, the osteogenic phenotype was minimally influenced by surface topography. Specifically, alkaline phosphatase (ALP) expression was not increased on nanotopographic films, nor was calcium deposition improved after 21 days in culture. Ca: P ratios were similar to native mouse bone on films with gratings of 415 nm width and 200 nm depth (G415) and 303 nm width and 190 nm depth (G303). Notably, all surfaces had Ca∶P ratios significantly lower than G415 films. Collectively, these data suggest that, PMMA films with nanogratings are poor drivers of an osteogenic phenotype. PMID:24594848

Directed Magnetic Particle Transport above Artificial Magnetic Domains Due to Dynamic Magnetic Potential Energy Landscape Transformation.

PubMed

Holzinger, Dennis; Koch, Iris; Burgard, Stefan; Ehresmann, Arno

2015-07-28

An approach for a remotely controllable transport of magnetic micro- and/or nanoparticles above a topographically flat exchange-bias (EB) thin film system, magnetically patterned into parallel stripe domains, is presented where the particle manipulation is achieved by sub-mT external magnetic field pulses. Superparamagnetic core-shell particles are moved stepwise by the dynamic transformation of the particles' magnetic potential energy landscape due to the external magnetic field pulses without affecting the magnetic state of the thin film system. The magnetic particle velocity is adjustable in the range of 1-100 μm/s by the design of the substrate's magnetic field landscape (MFL), the particle-substrate distance, and the magnitude of the applied external magnetic field pulses. The agglomeration of magnetic particles is avoided by the intrinsic magnetostatic repulsion of particles due to the parallel alignment of the particles' magnetic moments perpendicular to the transport direction and parallel to the surface normal of the substrate during the particle motion. The transport mechanism is modeled by a quantitative theory based on the precise knowledge of the sample's MFL and the particle-substrate distance.

Soil and substrate morphology as witnesses of present and former agricultural landscape management

NASA Astrophysics Data System (ADS)

Chartin, C.; Salvador-Blanes, S.; Hinschberger, F.; Bourennane, H.; Macaire, J.-J.

2009-04-01

Water and tillage erosion, combined with the effect of successive regrouping of the land campaigns, have sensibly modified the morphology of cultivated hillslopes. Nowadays, we can still observe over cultivated landscapes various anthropogenic structures (e.g. lynchets) that correspond to former and/or present field limits. The aim of this work is to spatially characterise the geometry of these various structures, and to assess their relation with soil variability. The 10 ha studied site corresponds to an hillslope located in a small calcareous watershed near Tours in the Parisian Basin (France). Soils are mainly Cambisols (calcaric), Epileptic cambisols (calcaric) and Colluvic cambisols. This watershed is characterised by the presence of many soil accumulation structures and has been submitted to an important regrouping of the lands since the 1960's. The existing structures were accurately located and defined through a topographical analysis (slope, profile curvature...), and then related to past and present field limits using aerial photographies and cadastral maps. Two main morphological structures, deeply marked in the topography, are identified. The most remarkable type corresponds to well developed lynchets located at the lower part of field limits. Secondary structures, less marked than lynchets, are linked to field limits which existed at least since 1836, but that disappeared from the 1960's. These secondary structures look like longitudinal bulges placed perpendicularly to the direction of the main slope. A soil survey on these two geomorphic structure types has been performed in order to determine their specific geometry. Lynchets are characterised by a large increase in the thickness of soils: from 35 cm at 24 m upslope to more than 120 cm on its top. But, in some cases, the elevation study shows a topographical discontinuity between the top of the accumulation and the field or road below, discontinuity that is more important than the maximum soil thickness observed in the lynchet. This implies that the substrate, which is mostly homogeneous, has been largely excavated below these limits certainly due to repeated tillage operations. Concerning the secondary structures, soil thickness increases slightly from 35 cm at 16 m up- and downslope the former field limit to 70 cm at the maximum of the bulges convexity. However, the slope morphology seems to show larger soil accumulation considering a regular substrate morphology along the hillslope profile. Here too, by combining soil thickness and surface topography, we show that the substrate has certainly been strongly remodelled at these former field limits by tillage erosion. The spatial variability of the various soils types is closely linked to the sequence of structures oriented perpendicularly to the direction of the main slope. Although the current topography is clearly marked by various structures linked to former and present field limits, it appears that soil thickness is not the only factor explaining these large variations in the slope morphology: long-term agricultural practices, certainly tillage, "shape" the substrate as well. It is thus important to take into account these substrate excavations for sediment budget studies. The use of tracers such as 137Cs will allow to understand the intensity of these morphological changes at the slope scale within the last decades.

The effect of topography on arctic-alpine aboveground biomass and NDVI patterns

NASA Astrophysics Data System (ADS)

Riihimäki, Henri; Heiskanen, Janne; Luoto, Miska

2017-04-01

Topography is a key factor affecting numerous environmental phenomena, including Arctic and alpine aboveground biomass (AGB) distribution. Digital Elevation Model (DEM) is a source of topographic information which can be linked to local growing conditions. Here, we investigated the effect of DEM derived variables, namely elevation, topographic position, radiation and wetness on AGB and Normalized Difference Vegetation Index (NDVI) in a Fennoscandian forest-alpine tundra ecotone. Boosted regression trees were used to derive non-parametric response curves and relative influences of the explanatory variables. Elevation and potential incoming solar radiation were the most important explanatory variables for both AGB and NDVI. In the NDVI models, the response curves were smooth compared with AGB models. This might be caused by large contribution of field and shrub layer to NDVI, especially at the treeline. Furthermore, radiation and elevation had a significant interaction, showing that the highest NDVI and biomass values are found from low-elevation, high-radiation sites, typically on the south-southwest facing valley slopes. Topographic wetness had minor influence on AGB and NDVI. Topographic position had generally weak effects on AGB and NDVI, although protected topographic position seemed to be more favorable below the treeline. The explanatory power of the topographic variables, particularly elevation and radiation demonstrates that DEM-derived land surface parameters can be used for exploring biomass distribution resulting from landform control on local growing conditions.

An experimental topographic amplification study at Los Alamos National Laboratory using ambient vibrations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stolte, Andrew C.; Cox, Brady R.; Lee, Richard C.

An experimental study aimed at investigating potential topographic amplification of seismic waves was conducted on a 50-m-tall and 185-m-wide soft-rock ridge located at Los Alamos National Laboratory near Los Alamos, New Mexico. Ten portable broadband seismograph stations were placed in arrays across the ridge and left to record ambient vibration data for ~9 hours. Clear evidence of topographic amplification was observed by comparing spectral ratios calculated from ambient noise recordings at the toe, slope, and crest of the instrumented ridge. The inferred resonance frequency of the ridge obtained from the experimental recordings was found to agree well with several simplemore » estimates of the theoretical resonance frequency based on its geometry and stiffness. Results support the feasibility of quantifying the frequency range of topographic amplification solely using ambient vibrations, rather than strong or weak ground motions. Additionally, comparisons have been made between a number of widely used experimental methods for quantifying topographic effects, such as the standard spectral ratio, median reference method, and horizontal-to-vertical spectral ratio. As a result, differences in the amplification and frequency range of topographic effects indicated by these methods highlight the importance of choosing a reference condition that is appropriate for the site-specific conditions and goals associated with an experimental topographic amplification study.« less

An experimental topographic amplification study at Los Alamos National Laboratory using ambient vibrations

DOE PAGES

Stolte, Andrew C.; Cox, Brady R.; Lee, Richard C.

2017-03-14

An experimental study aimed at investigating potential topographic amplification of seismic waves was conducted on a 50-m-tall and 185-m-wide soft-rock ridge located at Los Alamos National Laboratory near Los Alamos, New Mexico. Ten portable broadband seismograph stations were placed in arrays across the ridge and left to record ambient vibration data for ~9 hours. Clear evidence of topographic amplification was observed by comparing spectral ratios calculated from ambient noise recordings at the toe, slope, and crest of the instrumented ridge. The inferred resonance frequency of the ridge obtained from the experimental recordings was found to agree well with several simplemore » estimates of the theoretical resonance frequency based on its geometry and stiffness. Results support the feasibility of quantifying the frequency range of topographic amplification solely using ambient vibrations, rather than strong or weak ground motions. Additionally, comparisons have been made between a number of widely used experimental methods for quantifying topographic effects, such as the standard spectral ratio, median reference method, and horizontal-to-vertical spectral ratio. As a result, differences in the amplification and frequency range of topographic effects indicated by these methods highlight the importance of choosing a reference condition that is appropriate for the site-specific conditions and goals associated with an experimental topographic amplification study.« less

Synergetic topography and chemistry cues guiding osteogenic differentiation in bone marrow stromal cells through ERK1/2 and p38 MAPK signaling pathway.

PubMed

Zhang, Xinran; Li, Haotian; Lin, Chucheng; Ning, Congqin; Lin, Kaili

2018-01-30

Both the topographic surface and chemical composition modification can enhance rapid osteogenic differentiation and bone formation. Till now, the synergetic effects of topography and chemistry cues guiding biological responses have been rarely reported. Herein, the ordered micro-patterned topography and classically essential trace element of strontium (Sr) ion doping were selected to imitate topography and chemistry cues, respectively. The ordered micro-patterned topography on Sr ion-doped bioceramics was successfully duplicated using the nylon sieve as the template. Biological response results revealed that the micro-patterned topography design or Sr doping could promote cell attachment, ALP activity, and osteogenic differentiation of bone marrow-derived mesenchymal stem cells (BMSCs). Most importantly, the samples both with micro-patterned topography and Sr doping showed the highest promotion effects, and could synergistically activate the ERK1/2 and p38 MAPK signaling pathways. The results suggested that the grafts with both specific topography and chemistry cues have synergetic effects on osteogenic activity of BMSCs and provide an effective approach to design functional bone grafts and cell culture substrates.

Regeneration Patterns in Canopy Gaps of Mixed-oak Forests of the Southern Appalachians: Influences of Topographic Position and Evergreen Understory

Treesearch

Barton D. Clinton; Lindsay R. Boring; Wayne T. Swank

1994-01-01

Canopy gaps in southern Appalachian mixed-oak forests were assessed for the effects of topographic, gap and stand variables on density of wood seedlings. Seedling density was significantly correlated with percent slope and positively with gap age (l-5 yr). Density varied substantially among topographic positions and increased with gap size. Species richness...

Spatial patterns in the effects of fire on savanna vegetation three-dimensional structure.

PubMed

Levick, Shaun R; Asner, Gregory P; Smit, Izak P J

2012-12-01

Spatial variability in the effects of fire on savanna vegetation structure is seldom considered in ecology, despite the inherent heterogeneity of savanna landscapes. Much has been learned about the effects of fire on vegetation structure from long-term field experiments, but these are often of limited spatial extent and do not encompass different hillslope catena elements. We mapped vegetation three-dimensional (3-D) structure over 21 000 ha in nine savanna landscapes (six on granite, three on basalt), each with contrasting long-term fire histories (higher and lower fire frequency), as defined from a combination of satellite imagery and 67 years of management records. Higher fire frequency areas contained less woody canopy cover than their lower fire frequency counterparts in all landscapes, and woody cover reduction increased linearly with increasing difference in fire frequency (r2 = 0.58, P = 0.004). Vegetation height displayed a more heterogeneous response to difference in fire frequency, with taller canopies present in the higher fire frequency areas of the wetter sites. Vegetation 3-D structural differences between areas of higher and lower fire frequency differed between geological substrates and varied spatially across hillslopes. Fire had the greatest relative impact on vegetation structure on nutrient-rich basalt substrates, and it imparted different structural responses upon vegetation in upland, midslope, and lowland topographic positions. These results highlight the complexity of fire vegetation relationships in savanna systems, and they suggest that underlying landscape heterogeneity needs more explicit incorporation into fire management policies.

Topographic correction realization based on the CBERS-02B image

NASA Astrophysics Data System (ADS)

Qin, Hui-ping; Yi, Wei-ning; Fang, Yong-hua

2011-08-01

The special topography of mountain terrain will induce the retrieval distortion in same species and surface spectral lines. In order to improve the research accuracy of topographic surface characteristic, many researchers have focused on topographic correction. Topographic correction methods can be statistical-empirical model or physical model, in which the methods based on the digital elevation model data are most popular. Restricted by spatial resolution, previous model mostly corrected topographic effect based on Landsat TM image, whose spatial resolution is 30 meter that can be easily achieved from internet or calculated from digital map. Some researchers have also done topographic correction based on high spatial resolution images, such as Quickbird and Ikonos, but there is little correlative research on the topographic correction of CBERS-02B image. In this study, liao-ning mountain terrain was taken as the objective. The digital elevation model data was interpolated to 2.36 meter by 15 meter original digital elevation model one meter by one meter. The C correction, SCS+C correction, Minnaert correction and Ekstrand-r were executed to correct the topographic effect. Then the corrected results were achieved and compared. The images corrected with C correction, SCS+C correction, Minnaert correction and Ekstrand-r were compared, and the scatter diagrams between image digital number and cosine of solar incidence angel with respect to surface normal were shown. The mean value, standard variance, slope of scatter diagram, and separation factor were statistically calculated. The analysed result shows that the shadow is weakened in corrected images than the original images, and the three-dimensional affect is removed. The absolute slope of fitting lines in scatter diagram is minished. Minnaert correction method has the most effective result. These demonstrate that the former correction methods can be successfully adapted to CBERS-02B images. The DEM data can be interpolated step by step to get the corresponding spatial resolution approximately for the condition that high spatial resolution elevation data is hard to get.

Multiple Scales of Control on the Structure and Spatial Distribution of Woody Vegetation in African Savanna Watersheds

PubMed Central

Vaughn, Nicholas R.; Asner, Gregory P.; Smit, Izak P. J.; Riddel, Edward S.

2015-01-01

Factors controlling savanna woody vegetation structure vary at multiple spatial and temporal scales, and as a consequence, unraveling their combined effects has proven to be a classic challenge in savanna ecology. We used airborne LiDAR (light detection and ranging) to map three-dimensional woody vegetation structure throughout four savanna watersheds, each contrasting in geologic substrate and climate, in Kruger National Park, South Africa. By comparison of the four watersheds, we found that geologic substrate had a stronger effect than climate in determining watershed-scale differences in vegetation structural properties, including cover, height and crown density. Generalized Linear Models were used to assess the spatial distribution of woody vegetation structural properties, including cover, height and crown density, in relation to mapped hydrologic, topographic and fire history traits. For each substrate and climate combination, models incorporating topography, hydrology and fire history explained up to 30% of the remaining variation in woody canopy structure, but inclusion of a spatial autocovariate term further improved model performance. Both crown density and the cover of shorter woody canopies were determined more by unknown factors likely to be changing on smaller spatial scales, such as soil texture, herbivore abundance or fire behavior, than by our mapped regional-scale changes in topography and hydrology. We also detected patterns in spatial covariance at distances up to 50–450 m, depending on watershed and structural metric. Our results suggest that large-scale environmental factors play a smaller role than is often attributed to them in determining woody vegetation structure in southern African savannas. This highlights the need for more spatially-explicit, wide-area analyses using high resolution remote sensing techniques. PMID:26660502

Multiple Scales of Control on the Structure and Spatial Distribution of Woody Vegetation in African Savanna Watersheds.

PubMed

Vaughn, Nicholas R; Asner, Gregory P; Smit, Izak P J; Riddel, Edward S

2015-01-01

Factors controlling savanna woody vegetation structure vary at multiple spatial and temporal scales, and as a consequence, unraveling their combined effects has proven to be a classic challenge in savanna ecology. We used airborne LiDAR (light detection and ranging) to map three-dimensional woody vegetation structure throughout four savanna watersheds, each contrasting in geologic substrate and climate, in Kruger National Park, South Africa. By comparison of the four watersheds, we found that geologic substrate had a stronger effect than climate in determining watershed-scale differences in vegetation structural properties, including cover, height and crown density. Generalized Linear Models were used to assess the spatial distribution of woody vegetation structural properties, including cover, height and crown density, in relation to mapped hydrologic, topographic and fire history traits. For each substrate and climate combination, models incorporating topography, hydrology and fire history explained up to 30% of the remaining variation in woody canopy structure, but inclusion of a spatial autocovariate term further improved model performance. Both crown density and the cover of shorter woody canopies were determined more by unknown factors likely to be changing on smaller spatial scales, such as soil texture, herbivore abundance or fire behavior, than by our mapped regional-scale changes in topography and hydrology. We also detected patterns in spatial covariance at distances up to 50-450 m, depending on watershed and structural metric. Our results suggest that large-scale environmental factors play a smaller role than is often attributed to them in determining woody vegetation structure in southern African savannas. This highlights the need for more spatially-explicit, wide-area analyses using high resolution remote sensing techniques.

Mode characteristics of nonplanar double-heterojunction and large-optical-cavity laser structures

NASA Technical Reports Server (NTRS)

Butler, J. K.; Botez, D.

1982-01-01

Mode behavior of nonplanar double-heterojunction (DH) and large-optical-cavity (LOC) lasers is investigated using the effective index method to model the lateral field distribution. The thickness variations of various layers for the devices discussed are correlated with the growth characteristics of liquid-phase epitaxy over topographical features (channels, mesas) etched into the substrate. The effective dielectric profiles of constricted double-heterojunction (CDH)-LOC lasers show a strong influence on transverse mode operation: the fundamental transverse mode (i.e., in the plane perpendicular to the junction) may be laterally index-guided, while the first (high)-order mode is laterally index-antiguided. The analytical model developed uses a smoothly varying hyperbolic cosine distribution to characterize lateral index variations. The waveguide model is applied to several lasers to illustrate conditions necessary to convert leaky modes to trapped ones via the active-region gain distribution. Theoretical radiation patterns are calculated using model parameters, and matched to an experimental far-field pattern.

Cell-like features imprinted in the physical nano- and micro-topography of the environment modify the responses to anti-cancer drugs of endometrial cancer cells.

PubMed

Tan, Li Hui; Sykes, Peter H; Alkaisi, Maan M; Evans, John J

2017-02-14

Topographical features of cells at nanometre resolution were fabricated in polystyrene. The study investigated the effect of physical topography on the response of cancer cells to the common anticancer drugs, paclitaxel and doxorubicin. Human endometrial cancer cells (Ishikawa) were incubated on substrates containing cell-like features that had been fabricated using our bioimprint methodology to create moulds of cells with positive (convex) and negative (concave) topography. Control cultures were performed on flat substrates. Effects of the drugs on caspase-3 expression, proliferating nuclear antigen (PCNA) expression, cell number and vascular endothelial growth factor (VEGF) secretion were determined. Results revealed that the topography influenced the cell responses in a drug-dependent manner i.e. paclitaxel effects were sensitive to topography differently to those of doxorubicin. In addition, function signalling pathways were sensitive to the detailed topography i.e. positive imprint and negative imprint induced distinct response patterns. The results in this study show for the first time that a culture surface with cell-like topography, that has both nano- and micro-resolution, influences endometrial cancer cell responses to chemotherapy drugs. The effects are dependent on the topography and also on the chemotherapy drug. In particular, the platforms described have potential to provide substrates with high physical relevancy on which to undertake preclinical testing of new drugs. The method also allows for use of different cell types to provide cell-specific topography. The results imply that physical architecture of the cancer cell environment may be a suitable prospective target to enhance clinical activity of traditional drugs. Additionally or alternatively we provide compelling support for the notion that understanding the physical component of the nano- and micro-environment may encourage a redirection of drug development. Further, our observation that the cells distinguish between the different cell-like topographies (positive and negative bioimprints) indicates that a realistic topography is advantageous as growth platforms in experiment design.

Localized damage caused by topographic amplification during the 2010 M7.0 Haiti earthquake

USGS Publications Warehouse

Hough, S.E.; Altidor, J.R.; Anglade, D.; Given, D.; Janvier, M.G.; Maharrey, J.Z.; Meremonte, M.; Mildor, B.S.-L.; Prepetit, C.; Yong, A.

2010-01-01

Local geological conditions, including both near-surface sedimentary layers and topographic features, are known to significantly influence ground motions caused by earthquakes. Microzonation maps use local geological conditions to characterize seismic hazard, but commonly incorporate the effect of only sedimentary layers. Microzonation does not take into account local topography, because significant topographic amplification is assumed to be rare. Here we show that, although the extent of structural damage in the 2010 Haiti earthquake was primarily due to poor construction, topographic amplification contributed significantly to damage in the district of Petionville, south of central Port-au-Prince. A large number of substantial, relatively well-built structures situated along a foothill ridge in this district sustained serious damage or collapse. Using recordings of aftershocks, we calculate the ground motion response at two seismic stations along the topographic ridge and at two stations in the adjacent valley. Ground motions on the ridge are amplified relative to both sites in the valley and a hard-rock reference site, and thus cannot be explained by sediment-induced amplification. Instead, the amplitude and predominant frequencies of ground motion indicate the amplification of seismic waves by a narrow, steep ridge. We suggest that microzonation maps can potentially be significantly improved by incorporation of topographic effects. ?? 2010 Macmillan Publishers Limited. All rights reserved.

FILMPAR: A parallel algorithm designed for the efficient and accurate computation of thin film flow on functional surfaces containing micro-structure

NASA Astrophysics Data System (ADS)

Lee, Y. C.; Thompson, H. M.; Gaskell, P. H.

2009-12-01

FILMPAR is a highly efficient and portable parallel multigrid algorithm for solving a discretised form of the lubrication approximation to three-dimensional, gravity-driven, continuous thin film free-surface flow over substrates containing micro-scale topography. While generally applicable to problems involving heterogeneous and distributed features, for illustrative purposes the algorithm is benchmarked on a distributed memory IBM BlueGene/P computing platform for the case of flow over a single trench topography, enabling direct comparison with complementary experimental data and existing serial multigrid solutions. Parallel performance is assessed as a function of the number of processors employed and shown to lead to super-linear behaviour for the production of mesh-independent solutions. In addition, the approach is used to solve for the case of flow over a complex inter-connected topographical feature and a description provided of how FILMPAR could be adapted relatively simply to solve for a wider class of related thin film flow problems. Program summaryProgram title: FILMPAR Catalogue identifier: AEEL_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEEL_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 530 421 No. of bytes in distributed program, including test data, etc.: 1 960 313 Distribution format: tar.gz Programming language: C++ and MPI Computer: Desktop, server Operating system: Unix/Linux Mac OS X Has the code been vectorised or parallelised?: Yes. Tested with up to 128 processors RAM: 512 MBytes Classification: 12 External routines: GNU C/C++, MPI Nature of problem: Thin film flows over functional substrates containing well-defined single and complex topographical features are of enormous significance, having a wide variety of engineering, industrial and physical applications. However, despite recent modelling advances, the accurate numerical solution of the equations governing such problems is still at a relatively early stage. Indeed, recent studies employing a simplifying long-wave approximation have shown that highly efficient numerical methods are necessary to solve the resulting lubrication equations in order to achieve the level of grid resolution required to accurately capture the effects of micro- and nano-scale topographical features. Solution method: A portable parallel multigrid algorithm has been developed for the above purpose, for the particular case of flow over submerged topographical features. Within the multigrid framework adopted, a W-cycle is used to accelerate convergence in respect of the time dependent nature of the problem, with relaxation sweeps performed using a fixed number of pre- and post-Red-Black Gauss-Seidel Newton iterations. In addition, the algorithm incorporates automatic adaptive time-stepping to avoid the computational expense associated with repeated time-step failure. Running time: 1.31 minutes using 128 processors on BlueGene/P with a problem size of over 16.7 million mesh points.

Topographic position, but not slope aspect, drives the dominance of functional strategies of tropical dry forest trees

NASA Astrophysics Data System (ADS)

Méndez-Toribio, M.; Ibarra-Manríquez, G.; Navarrete-Segueda, A.; Paz, H.

2017-08-01

In seasonal plant communities, it is recognized that topography-related variation in water availability and solar radiation determine vegetation structure and community composition; however, the effects on functional structure, particularly through changes in resource use strategies of plants are still poorly understood. This study examines the effects of slope aspect and topographic position on functional trait dominance in a tropical dry forest landscape and explores whether strategies for coping with drought (avoidance vs. tolerance) segregate spatially along the water stress gradient created by the interaction of these two topographic factors. The study was conducted in the Balsas river basin in south-central Mexico. Functional traits were evaluated in 63 species of trees (≥ 2.5 cm diameter at breast height) dominant in plots located at three topographic positions (low, medium and high) and on two slope aspects (north and south). Eight leaf and four stem functional traits, relating to the plants’ ability to avoid or tolerate water and temperature stress, were measured. Community-level functional traits were strongly affected by topographic position while only a weak signal was detected by the slope aspect. Contrary to our expectations, attributes associated with drought tolerance predominated on the lower topographic positions of the slopes, (moister and warmer sites), while on the upper parts with drier soil, but cooler air, attributes associated with water stress avoidance dominated. In addition, variation in the dominance of leaf pulvini and trichomes along the topographic gradient suggests environmental filtering by elevated air temperatures and water stress, respectively. Overall, our results suggest that the upper topographic positions that generate a shorter and more fluctuating water-availability window, favor readily-deciduous plants with high levels of water storage in their tissues, traits allowing for a rapid avoid of water stress, whereas on the lower topographic positions, where the soil remains moist for longer periods of time, tardily-deciduous species thrive with dense, low-water content tissues, attributes that are associated with physiological tolerance to drought.

Evolution of nanodot morphology on polycarbonate (PC) surfaces by 40 keV Ar{sup +}

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goyal, Meetika, E-mail: meetika89@gmail.com; Chawla, Mahak; Gupta, Divya

In the present paper we have discussed the effect of 40 keV Ar{sup +} ions irradiation on nanoscale surface morphology of Polycarbonate (PC) substrate. Specimens were sputtered at off normal incidences of 30°, 40° and 50° with the fluence of 1 × 10{sup 16} Ar{sup +}cm{sup −2}. The topographical behaviour of specimens was studied by using Atomic Force Microscopy (AFM) technique. AFM study demonstrates the evolution of nano dot morphology on PC specimens on irradiating with 1 × 10{sup 16} Ar{sup +}cm{sup −2}. Average size of dots varied from 37-95 nm in this specified range of incidence while density of dotsmore » varied from 0.17-3.0 × 107 dotscm{sup −2}. Such variations in morphological features have been supported by estimation of ion range and sputtering yield through SRIM simulations.« less

Effect of surface topography and bioactive properties on early adhesion and growth behavior of mouse preosteoblast MC3T3-E1 cells.

PubMed

Li, Na; Chen, Gang; Liu, Jue; Xia, Yang; Chen, Hanbang; Tang, Hui; Zhang, Feimin; Gu, Ning

2014-10-08

The effects of bioactive properties and surface topography of biomaterials on the adhesion and spreading properties of mouse preosteoblast MC3T3-E1 cells was investigated by preparation of different surfaces. Poly lactic-co-glycolic acid (PLGA) electrospun fibers (ES) were produced as a porous rough surface. In our study, coverslips were used as a substrate for the immobilization of 3,4-dihydroxyphenylalanine (DOPA) and collagen type I (COL I) in the preparation of bioactive surfaces. In addition, COL I was immobilized onto porous electrospun fibers surfaces (E-COL) to investigate the combined effects of bioactive molecules and topography. Untreated coverslips were used as controls. Early adhesion and growth behavior of MC3T3-E1 cells cultured on the different surfaces were studied at 6, 12, and 24 h. Evaluation of cell adhesion and morphological changes showed that the all the surfaces were favorable for promoting the adhesion and spreading of cells. CCK-8 assays and flow cytometry revealed that both topography and bioactive properties were favorable for cell growth. Analysis of β1, α1, α2, α5, α10 and α11 integrin expression levels by immunofluorescence, real-time RT-PCR, and Western blot and indicated that surface topography plays an important role in the early stage of cell adhesion. However, the influence of topography and bioactive properties of surfaces on integrins is variable. Compared with any of the topographic or bioactive properties in isolation, the combined effect of both types of properties provided an advantage for the growth and spreading of MC3T3-E1 cells. This study provides a new insight into the functions and effects of topographic and bioactive modifications of surfaces at the interface between cells and biomaterials for tissue engineering.

Using Potential Vorticity to Characterize the Forcing of a Coastally Trapped Wind Reversal Along the California Coast

DTIC Science & Technology

2015-03-01

inversion technique yielded mixed results, heavily influenced by diurnal effects and subjected to instability due to topographical interactions... effects and subjected to instability due to topographical interactions. vi THIS PAGE INTENTIONALLY LEFT BLANK vii TABLE OF CONTENTS I...3 A. DEFINITION AND CLIMATOLOGY OF A CTWR

Role of Cellulose Nanocrystals on the Microstructure of Maleic Anhydride Plasma Polymer Thin Films.

PubMed

Brioude, Michel M; Roucoules, Vincent; Haidara, Hamidou; Vonna, Laurent; Laborie, Marie-Pierre

2015-07-01

Recently, it was shown that the microstructure of a maleic anhydride plasma polymer (MAPP) could be tailored ab initio by adjusting the plasma process parameters. In this work, we aim to investigate the ability of cellulose nanocrystals (CNCs) to induce topographical structuration. Thus, a new approach was designed based on the deposition of MAPP on CNCs model surfaces. The nanocellulosic surfaces were produced by spin-coating the CNC suspension on a silicon wafer substrate and on a hydrophobic silicon wafer substrate patterned with circular hydrophilic microsized domains (diameter of 86.9 ± 4.9 μm), resulting in different degrees of CNC aggregation. By depositing the MAPP over these surfaces, it was possible to observe that the surface fraction of nanostructures increased from 20% to 35%. This observation suggests that CNCs can act as nucleation points resulting in more structures, although a critical density of the CNCs is required.

Ordered alternating binary polymer nanodroplet array by sequential spin dewetting.

PubMed

Bhandaru, Nandini; Das, Anuja; Salunke, Namrata; Mukherjee, Rabibrata

2014-12-10

We report a facile technique for fabricating an ordered array of nearly equal-sized mesoscale polymer droplets of two constituent polymers (polystyrene, PS and poly(methyl methacrylate), PMMA) arranged in an alternating manner on a topographically patterned substrate. The self-organized array of binary polymers is realized by sequential spin dewetting. First, a dilute solution of PMMA is spin-dewetted on a patterned substrate, resulting in an array of isolated PMMA droplets arranged along the substrate grooves due to self-organization during spin coating itself. The sample is then silanized with octadecyltrichlorosilane (OTS), and subsequently, a dilute solution of PS is spin-coated on to it, which also undergoes spin dewetting. The spin-dewetted PS drops having a size nearly equal to the pre-existing PMMA droplets position themselves between two adjacent PMMA drops under appropriate conditions, forming an alternating binary polymer droplet array. The alternating array formation takes place for a narrow range of solution concentration for both the polymers and depends on the geometry of the substrate. The size of the droplets depends on the extent of confinement, and droplets as small as 100 nm can be obtained by this method, on a suitable template. The findings open up the possibility of creating novel surfaces having ordered multimaterial domains with a potential multifunctional capability.

Three dimensional topography correction applied to magnetotelluric data from Sikkim Himalayas

NASA Astrophysics Data System (ADS)

Kumar, Sushil; Patro, Prasanta K.; Chaudhary, B. S.

2018-06-01

Magnetotelluric (MT) method is one of the powerful tools to investigate the deep crustal image of mountainous regions such as Himalayas. Topographic variations due to irregular surface terrain distort the resistivity curves and hence may not give accurate interpretation of magnetotelluric data. The two-dimensional (2-D) topographic effects in Transverse Magnetic (TM) mode is only galvanic whereas inductive in Transverse Electric (TE) mode, thus TM mode responses is much more important than TE mode responses in 2-D. In three-dimensional (3-D), the topography effect is both galvanic and inductive in each element of impedance tensor and hence the interpretation is complicated. In the present work, we investigate the effects of three-dimensional (3-D) topography for a hill model. This paper presents the impedance tensor correction algorithm to reduce the topographic effects in MT data. The distortion caused by surface topography effectively decreases by using homogeneous background resistivity in impedance correction method. In this study, we analyze the response of ramp, distance from topographic edges, conductive and resistive dykes. The new correction method is applied to the real data from Sikkim Himalayas, which brought out the true nature of the basement in this region.

Significant effect of topographic normalization of airborne LiDAR data on the retrieval of plant area index profile in mountainous forests

NASA Astrophysics Data System (ADS)

Liu, Jing; Skidmore, Andrew K.; Heurich, Marco; Wang, Tiejun

2017-10-01

As an important metric for describing vertical forest structure, the plant area index (PAI) profile is used for many applications including biomass estimation and wildlife habitat assessment. PAI profiles can be estimated with the vertically resolved gap fraction from airborne LiDAR data. Most research utilizes a height normalization algorithm to retrieve local or relative height by assuming the terrain to be flat. However, for many forests this assumption is not valid. In this research, the effect of topographic normalization of airborne LiDAR data on the retrieval of PAI profile was studied in a mountainous forest area in Germany. Results show that, although individual tree height may be retained after topographic normalization, the spatial arrangement of trees is changed. Specifically, topographic normalization vertically condenses and distorts the PAI profile, which consequently alters the distribution pattern of plant area density in space. This effect becomes more evident as the slope increases. Furthermore, topographic normalization may also undermine the complexity (i.e., canopy layer number and entropy) of the PAI profile. The decrease in PAI profile complexity is not solely determined by local topography, but is determined by the interaction between local topography and the spatial distribution of each tree. This research demonstrates that when calculating the PAI profile from airborne LiDAR data, local topography needs to be taken into account. We therefore suggest that for ecological applications, such as vertical forest structure analysis and modeling of biodiversity, topographic normalization should not be applied in non-flat areas when using LiDAR data.

Effects of uncertain topographic input data on two-dimensional flow modeling in a gravel-bed river

USGS Publications Warehouse

Legleiter, C.J.; Kyriakidis, P.C.; McDonald, R.R.; Nelson, J.M.

2011-01-01

Many applications in river research and management rely upon two-dimensional (2D) numerical models to characterize flow fields, assess habitat conditions, and evaluate channel stability. Predictions from such models are potentially highly uncertain due to the uncertainty associated with the topographic data provided as input. This study used a spatial stochastic simulation strategy to examine the effects of topographic uncertainty on flow modeling. Many, equally likely bed elevation realizations for a simple meander bend were generated and propagated through a typical 2D model to produce distributions of water-surface elevation, depth, velocity, and boundary shear stress at each node of the model's computational grid. Ensemble summary statistics were used to characterize the uncertainty associated with these predictions and to examine the spatial structure of this uncertainty in relation to channel morphology. Simulations conditioned to different data configurations indicated that model predictions became increasingly uncertain as the spacing between surveyed cross sections increased. Model sensitivity to topographic uncertainty was greater for base flow conditions than for a higher, subbankfull flow (75% of bankfull discharge). The degree of sensitivity also varied spatially throughout the bend, with the greatest uncertainty occurring over the point bar where the flow field was influenced by topographic steering effects. Uncertain topography can therefore introduce significant uncertainty to analyses of habitat suitability and bed mobility based on flow model output. In the presence of such uncertainty, the results of these studies are most appropriately represented in probabilistic terms using distributions of model predictions derived from a series of topographic realizations. Copyright 2011 by the American Geophysical Union.

Cellular Scale Anisotropic Topography Guides Schwann Cell Motility

PubMed Central

Mitchel, Jennifer A.; Hoffman-Kim, Diane

2011-01-01

Directed migration of Schwann cells (SC) is critical for development and repair of the peripheral nervous system. Understanding aspects of motility specific to SC, along with SC response to engineered biomaterials, may inform strategies to enhance nerve regeneration. Rat SC were cultured on laminin-coated microgrooved poly(dimethyl siloxane) platforms that were flat or presented repeating cellular scale anisotropic topographical cues, 30 or 60 µm in width, and observed with timelapse microscopy. SC motion was directed parallel to the long axis of the topography on both the groove floor and the plateau, with accompanying differences in velocity and directional persistence in comparison to SC motion on flat substrates. In addition, feature dimension affected SC morphology, alignment, and directional persistence. Plateaus and groove floors presented distinct cues which promoted differential motility and variable interaction with the topographical features. SC on the plateau surfaces tended to have persistent interactions with the edge topography, while SC on the groove floors tended to have infrequent contact with the corners and walls. Our observations suggest the capacity of SC to be guided without continuous contact with a topographical cue. SC exhibited a range of distinct motile morphologies, characterized by their symmetry and number of extensions. Across all conditions, SC with a single extension traveled significantly faster than cells with more or no extensions. We conclude that SC motility is complex, where persistent motion requires cellular asymmetry, and that anisotropic topography with cellular scale features can direct SC motility. PMID:21949703

Controls on the spatial variability of supraglacial channel morphology and network characteristics

NASA Astrophysics Data System (ADS)

King, L.

2015-12-01

Supraglacial streams are widespread and ubiquitous features of glacial ice surfaces around the world. They play an important role in the spatial and temporal distribution of meltwater on a glacier, moderating the flux of meltwater to the bed. They are themselves unique fluvial features in which erosion and deposition is achieved through thermal erosion of ice rather than alluvial substrate. As such, they are of both glaciological and fluvial geomorphological interest for both practical and theoretical reasons. However, little is known about their characteristics through space and time, or how these characteristics reflect external driving forces. This research aims to address these gaps by characterizing the spatial variability of supraglacial stream morphology across a range of glacier types and environmental conditions and identifying forcings that control channel form. Topographic data was analyzed from a range of glacier surface types including icesheets, pocket alpine glaciers, and outlet valley glaciers spanning a range of latitudes and elevations, comprising glaciers from Greenland, British Columbia, Alaska, Iceland and Sweden. Channels were extracted from the topographic data using an automated approach based on identifying topographic depressions at different size scales, in which the method was tested relative to manually digitized stream networks. Channel geomorphology was subsequently characterized according to planimetric and drainage network geometries. Resulting morphometric characteristics were analyzed with regards to endo and exogenic environmental forcings such as ice topography and characteristics and climatic forcings to identify the primary controls on supraglacial channel morphology and the response of these channels with respect to these controls.

Effects of light intensity on components and topographical structures of extracellular polysaccharides from the cyanobacteria Nostoc sp.

PubMed

Ge, Hongmei; Xia, Ling; Zhou, Xuping; Zhang, Delu; Hu, Chunxiang

2014-02-01

A study on the effects of light intensity (40 and 80 μE/m(2)/sec) on the components and topographical structures of extracellular polysaccharides (EPS) was carried out in cyanobacteria Nostoc sp.. EPS yield increased with light intensity. However, light intensity did not significantly affect the EPS fractions and monosaccharide composition. Higher light intensity generally resulted in higher protein content of EPS in similar fractions. The topographical structure of EPS, investigated by atomic force microscopy, appeared as spherical lumps, chains and networks. The long chains were observed at higher light intensity. Thus, light intensity affected the yield and nature of EPS.

Sandmeier model based topographic correction to lunar spectral profiler (SP) data from KAGUYA satellite.

PubMed

Chen, Sheng-Bo; Wang, Jing-Ran; Guo, Peng-Ju; Wang, Ming-Chang

2014-09-01

The Moon may be considered as the frontier base for the deep space exploration. The spectral analysis is one of the key techniques to determine the lunar surface rock and mineral compositions. But the lunar topographic relief is more remarkable than that of the Earth. It is necessary to conduct the topographic correction for lunar spectral data before they are used to retrieve the compositions. In the present paper, a lunar Sandmeier model was proposed by considering the radiance effect from the macro and ambient topographic relief. And the reflectance correction model was also reduced based on the Sandmeier model. The Spectral Profile (SP) data from KAGUYA satellite in the Sinus Iridum quadrangle was taken as an example. And the digital elevation data from Lunar Orbiter Laser Altimeter are used to calculate the slope, aspect, incidence and emergence angles, and terrain-viewing factor for the topographic correction Thus, the lunar surface reflectance from the SP data was corrected by the proposed model after the direct component of irradiance on a horizontal surface was derived. As a result, the high spectral reflectance facing the sun is decreased and low spectral reflectance back to the sun is compensated. The statistical histogram of reflectance-corrected pixel numbers presents Gaussian distribution Therefore, the model is robust to correct lunar topographic effect and estimate lunar surface reflectance.

A dedicated system for topographical working memory: evidence from domain-specific interference tests.

PubMed

Piccardi, L; Nori, R; Boccia, M; Barbetti, S; Verde, P; Guariglia, C; Ferlazzo, F

2015-08-01

In the present study, we used single- and dual-task conditions to investigate the nature of topographical working memory to better understand what type of task can hamper performance during navigation. During dual-task conditions, we considered four different sources of interference: motor (M), spatial motor (SM), verbal (i.e. articulatory suppression AS) and spatial environmental (SE). In order to assess the nature of topographical working memory, we used the Walking Corsi Test, asking the participants to perform two tasks simultaneously (M, SM, AS and SE). Our results showed that only spatial-environmental interference hampers the execution of a topographical working memory task, suggesting a task-domain-specific effect. We also found general gender differences in the topographical working memory capabilities: men were more proficient than women, regardless of the type of interferences. However, like men, women performed worse when a spatial-environmental interference was present.

Topographic effects on denitrification in drained agricultural fields

USDA-ARS?s Scientific Manuscript database

Denitrification is affected by soil moisture, while soil moisture can be affected by topography. Therefore, denitrification can be spatially correlated to topographic gradients. Three prior converted fields on the Delmarva Peninsula were sampled spatially for denitrification enzyme activity. The up...

a Semi-Empirical Topographic Correction Model for Multi-Source Satellite Images

NASA Astrophysics Data System (ADS)

Xiao, Sa; Tian, Xinpeng; Liu, Qiang; Wen, Jianguang; Ma, Yushuang; Song, Zhenwei

2018-04-01

Topographic correction of surface reflectance in rugged terrain areas is the prerequisite for the quantitative application of remote sensing in mountainous areas. Physics-based radiative transfer model can be applied to correct the topographic effect and accurately retrieve the reflectance of the slope surface from high quality satellite image such as Landsat8 OLI. However, as more and more images data available from various of sensors, some times we can not get the accurate sensor calibration parameters and atmosphere conditions which are needed in the physics-based topographic correction model. This paper proposed a semi-empirical atmosphere and topographic corrction model for muti-source satellite images without accurate calibration parameters.Based on this model we can get the topographic corrected surface reflectance from DN data, and we tested and verified this model with image data from Chinese satellite HJ and GF. The result shows that the correlation factor was reduced almost 85 % for near infrared bands and the classification overall accuracy of classification increased 14 % after correction for HJ. The reflectance difference of slope face the sun and face away the sun have reduced after correction.

Topographic map of Golden Gate Estates, Collier County, Florida

USGS Publications Warehouse

Jurado, Antonio

1981-01-01

Construction of canals related to land development in the Golden Gate Estates area of Collier County, Fla., has altered the natural drainage pattern of the watershed. The area of approximately 300 square miles was topographically mapped with a contour interval of 0.5 foot to assist in determining the effects of canal construction on the surface-water and ground-water resources in the watershed. The topographic map was prepared at a scale of 1:48,000 using aerial photography and ground-control points. (USGS)

Deposition and characterization of molybdenum thin films using dc-plasma magnetron sputtering

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khan, Majid, E-mail: majids@hotmail.com; Islam, Mohammad, E-mail: mohammad.islam@gmail.com

2013-12-15

Molebdenum (Mo) thin films were deposited on well-cleaned soda-lime glass substrates using DC-plasma magnetron sputtering. In the design of experiment deposition was optimized for maximum beneficial characteristics by monitoring effect of process variables such as deposition power (100–200 W). Their electrical, structural and morphological properties were analyzed to study the effect of these variables. The electrical resistivity of Mo thin films could be reduced by increasing deposition power. Within the range of analyzed deposition power, Mo thin films showed a mono crystalline nature and the crystallites were found to have an orientation along [110] direction. The surface morphology of thinmore » films showed that a highly dense micro structure has been obtained. The surface roughness of films increased with deposition power. The adhesion of Mo thin films could be improved by increasing the deposition power. Atomic force microscopy was used for the topographical study of the films and to determine the roughness of the films. X-ray diffractrometer and scanning electron microscopy analysis were used to investigate the crystallinity and surface morphology of the films. Hall effect measurement system was used to find resistivity, carrier mobility and carrier density of deposited films. The adhesion test was performed using scotch hatch tape adhesion test. Mo thin films prepared at deposition power of 200 W, substrate temperature of 23°C and Ar pressure of 0.0123 mbar exhibited a mono crystalline structure with an orientation along (110) direction, thickness of ∼550 nm and electrical resistivity value of 0.57 × 10{sup −4} Ω cm.« less

Simulation and Analysis of Topographic Effect on Land Surface Albedo over Mountainous Areas

NASA Astrophysics Data System (ADS)

Hao, D.; Wen, J.; Xiao, Q.

2017-12-01

Land surface albedo is one of the significant geophysical variables affecting the Earth's climate and controlling the surface radiation budget. Topography leads to the formation of shadows and the redistribution of incident radiation, which complicates the modeling and estimation of the land surface albedo. Some studies show that neglecting the topography effect may lead to significant bias in estimating the land surface albedo for the sloping terrain. However, for the composite sloping terrain, the topographic effects on the albedo remain unclear. Accurately estimating the sub-topographic effect on the land surface albedo over the composite sloping terrain presents a challenge for remote sensing modeling and applications. In our study, we focus on the development of a simplified estimation method for land surface albedo including black-sky albedo (BSA) and white-sky albedo (WSA) of the composite sloping terrain at a kilometer scale based on the fine scale DEM (30m) and quantitatively investigate and understand the topographic effects on the albedo. The albedo is affected by various factors such as solar zenith angle (SZA), solar azimuth angle (SAA), shadows, terrain occlusion, and slope and aspect distribution of the micro-slopes. When SZA is 30°, the absolute and relative deviations between the BSA of flat terrain and that of rugged terrain reaches 0.12 and 50%, respectively. When the mean slope of the terrain is 30.63° and SZA=30°, the absolute deviation of BSA caused by SAA can reach 0.04. The maximal relative and relative deviation between the WSA of flat terrain and that of rugged terrain reaches 0.08 and 50%. These results demonstrate that the topographic effect has to be taken into account in the albedo estimation.

A theoretical study of topographic effects on coastal upwelling and cross-shore exchange

NASA Astrophysics Data System (ADS)

Song, Y. Tony; Chao, Yi

The effects of topographic variations on coastal upwelling and cross-shore exchange are examined with a theoretical, continuously stratified, three-dimensional coastal ocean model. The model takes into account topographic variations in both alongshore and cross-shore directions and allows analytical solutions with an Ekman surface layer that faithfully represents the physical nature of the coastal upwelling system. Theoretical solutions with any analytical form of alongshore-varying topography can be solved based on the perturbation method of Killworth [J. Phys. Oceanogr. 8 (1978) 188]. Analyses of the model solutions lead to the following conclusions: The variation of upwelling fronts and currents is shown to be caused by the combined effect of topography and stratification. Topographic variation causes uneven upwelling distribution and leads to density variation, which results in a varying horizontal pressure gradient field that causes the meandering currents. The variation index is dependent upon a bilinear function of their physical parameters--the ratio of the topographic variation depth to the total depth and Burger's number of stratification. Cross-shore slope is found to play a role in maintaining the meandering structure of the alongshore currents. The anticyclonic circulations can further induce downwelling on the offshore side of the current, while the cyclonic circulations enhance upwelling and form upwelling centers on the inshore side of the current. Alongshore topography does not change the total upwelled water, i.e., the total Ekman pumping is conserved. However, it increases cross-exchange of water masses by transporting inshore (offshore) water near topographic features far offshore (inshore) from the mean position of the front. The applicability and limitations of the theory are also discussed.

Topographical Hill Shading Map Production Based Tianditu (map World)

NASA Astrophysics Data System (ADS)

Wang, C.; Zha, Z.; Tang, D.; Yang, J.

2018-04-01

TIANDITU (Map World) is the public version of National Platform for Common Geospatial Information Service, and the terrain service is an important channel for users on the platform. With the development of TIANDITU, topographical hill shading map production for providing and updating global terrain map on line becomes necessary for the characters of strong intuition, three-dimensional sense and aesthetic effect. As such, the terrain service of TIANDITU focuses on displaying the different scales of topographical data globally. And this paper mainly aims to research the method of topographical hill shading map production globally using DEM (Digital Elevation Model) data between the displaying scales about 1 : 140,000,000 to 1 : 4,000,000, corresponded the display level from 2 to 7 on TIANDITU website.

Strain-Engineering of Giant Pseudo-Magnetic Fields in Graphene/Boron Nitride (BN) Periodic Nanostructures

NASA Astrophysics Data System (ADS)

Hsu, Chen-Chih; Wang, Jiaqing; Teague, Marcus; Chen, Chien-Chang; Yeh, Nai-Chang

2015-03-01

Ideal graphene is strain-free whereas non-trivial strain can induce pseudo-magnetic fields as predicted theoretically and manifested experimentally. Here we employ nearly strain-free single-domain graphene, grown by plasma-enhanced chemical vapor deposition (PECVD) at low temperatures, to induce controlled strain by placing the PECVD-graphene on substrates containing engineered nanostructures. We fabricate periodic pyramid nanostructures (typically 100 ~ 200 nm laterally and 10 ~ 60 nm in height) on Si substrates by focused ion beam, and determine the topography of these nanostructures using atomic force microscopy and scanning electron microscopy after we transferred monolayer h-BN followed by PECVD-graphene onto these substrates. We find both layers conform well to the nanostructures so that we can control the size, arrangement, separation, and shape of the nanostructures to generate desirable pseudo-magnetic fields. We also employ molecular dynamics simulation to determine the displacement of carbon atoms under a given nanostructure. The pseudo-magnetic field thus obtained is ~150T in the center, relatively homogeneous over 50% of the area, and drops off precipitously near the edge. These findings are extended to arrays of nanostructures and compared with topographic and spectroscopic studies by STM. Supported by NSF.

Initial contact guidance during cell spreading is contractility-independent.

PubMed

Sales, Adrià; Holle, Andrew W; Kemkemer, Ralf

2017-08-02

A wide variety of cell types exhibit substrate topography-based behavior, also known as contact guidance. However, the precise cellular mechanisms underlying this process are still unknown. In this study, we investigated contact guidance by studying the reaction of human endothelial cells (ECs) to well-defined microgroove topographies, both during and after initial cell spreading. As the cytoskeleton plays a major role in cellular adaptation to topographical features, two methods were used to perturb cytoskeletal structures. Inhibition of actomyosin contractility with the chemical inhibitor blebbistatatin demonstrated that initial contact guidance events are independent of traction force generation. However, cell alignment to the grooved substrate was altered at later time points, suggesting an initial 'passive' phase of contact guidance, followed by a contractility-dependent 'active' phase that relies on mechanosensitive feedback. The actin cytoskeleton was also perturbed in an indirect manner by culturing cells upside down, resulting in decreased levels of contact guidance and suggesting that a possible loss of contact between the actin cytoskeleton and the substrate could lead to cytoskeleton impairment. The process of contact guidance at the microscale was found to be primarily lamellipodia driven, as no bias in filopodia extension was observed on micron-scale grooves.

Theoretical evaluation of accuracy in position and size of brain activity obtained by near-infrared topography

NASA Astrophysics Data System (ADS)

Kawaguchi, Hiroshi; Hayashi, Toshiyuki; Kato, Toshinori; Okada, Eiji

2004-06-01

Near-infrared (NIR) topography can obtain a topographical distribution of the activated region in the brain cortex. Near-infrared light is strongly scattered in the head, and the volume of tissue sampled by a source-detector pair on the head surface is broadly distributed in the brain. This scattering effect results in poor resolution and contrast in the topographic image of the brain activity. In this study, a one-dimensional distribution of absorption change in a head model is calculated by mapping and reconstruction methods to evaluate the effect of the image reconstruction algorithm and the interval of measurement points for topographic imaging on the accuracy of the topographic image. The light propagation in the head model is predicted by Monte Carlo simulation to obtain the spatial sensitivity profile for a source-detector pair. The measurement points are one-dimensionally arranged on the surface of the model, and the distance between adjacent measurement points is varied from 4 mm to 28 mm. Small intervals of the measurement points improve the topographic image calculated by both the mapping and reconstruction methods. In the conventional mapping method, the limit of the spatial resolution depends upon the interval of the measurement points and spatial sensitivity profile for source-detector pairs. The reconstruction method has advantages over the mapping method which improve the results of one-dimensional analysis when the interval of measurement points is less than 12 mm. The effect of overlapping of spatial sensitivity profiles indicates that the reconstruction method may be effective to improve the spatial resolution of a two-dimensional reconstruction of topographic image obtained with larger interval of measurement points. Near-infrared topography with the reconstruction method potentially obtains an accurate distribution of absorption change in the brain even if the size of absorption change is less than 10 mm.

Genesis Contingency Planning and Mishap Recovery: The Sample Curation View

NASA Technical Reports Server (NTRS)

Stansbery, E. K.; Allton, J. H.; Allen, C. C.; McNamara, K. M.; Calaway, M.; Rodriques, M. C.

2007-01-01

Planning for sample preservation and curation was part of mission design from the beginning. One of the scientific objectives for Genesis included collecting samples of three regimes of the solar wind in addition to collecting bulk solar wind during the mission. Collectors were fabricated in different thicknesses for each regime of the solar wind and attached to separate frames exposed to the solar wind during specific periods of solar activity associated with each regime. The original plan to determine the solar regime sampled for specific collectors was to identify to which frame the collector was attached. However, the collectors were dislodged during the hard landing making identification by frame attachment impossible. Because regimes were also identified by thickness of the collector, the regime sampled is identified by measuring fragment thickness. A variety of collector materials and thin films applied to substrates were selected and qualified for flight. This diversity provided elemental measurement in more than one material, mitigating effects of diffusion rates and/or radiation damage. It also mitigated against different material and substrate strengths resulting in differing effects of the hard landing. For example, silicon crystal substrates broke into smaller fragments than sapphire-based substrates and diamond surfaces were more resilient to flying debris damage than gold. The primary responsibility of the curation team for recovery was process documentation. Contingency planning for the recovery phase expanded this responsibility to include not only equipment to document, but also gather, contain and identify samples from the landing area and the recovered spacecraft. The team developed contingency plans for various scenarios as part of mission planning that included topographic maps to aid in site recovery and identification of different modes of transport and purge capability depending on damage. A clean tent, set-up at Utah Test & Training Range to control the environment for processing the sample return capsule and cleanly installing a nitrogen purge to the canister, was used to control the environment for extracting collector fragments from the damaged canister and to document and package over 10,000 collector fragments.

Direct laser writing of topographic features in semiconductor-doped glass

NASA Astrophysics Data System (ADS)

Smuk, Andrei Y.

2000-11-01

Patterning of glass and silica surfaces is important for a number of modern technologies, which depend on these materials for manufacturing of both final products, such as optics, and prototypes for casting and molding. Among the fields that require glass processing on microscopic scale are optics (lenses and arrays, diffractive/holographic elements, waveguides), biotechnology (capillary electrophoresis chips and biochemical libraries) and magnetic media (landing zones for magnetic heads). Currently, standard non-laser techniques for glass surface patterning require complex multi-step processes, such as photolithography. Work carried out at Brown has shown that semiconductor- doped glasses (SDG) allow a single-step patterning process using low power continuous-wave visible lasers. SDG are composite materials, which consist of semiconductor crystallites embedded into glass matrix. In this study, borosilicate glasses doped with CdSxSe1-x nanocrystals were used. Exposure of these materials to a low-power above- the-energy gap laser beam leads to local softening, and subsequent expansion and rapid solidification of the exposed volume, resulting in a nearly spherical topographic feature on the surface. The effects of the incident power, beam configuration, and the exposure time on the formation and final parameters of the microlens were studied. Based on the numerical simulation of the temperature distribution produced by the absorbed Gaussian beam, and the ideas of viscous flow at the temperatures around the glass transition point, a model of lens formation is suggested. The light intensity distribution in the near-field of the growing lens is shown to have a significant effect on the final lens height. Fabrication of dense arrays of microlenses is shown, and the thermal and structural interactions between the neighboring lenses were also studied. Two-dimensional continuous-profile topographic features are achieved by exposure of the moving substrates to the writing beam. By controlling the translation speed and the position of the sample, predefined extended structures, such as diffractive optical elements (blazed gratings, Dammann generators, Fresnel zone plates) can be produced with resolution of ~1μm. Below-the-surface patterning is achieved due to a selective etching of laser-written structures in hydrofluoric acid. Similar selective etching technique was developed for undoped borosilicate glasses by exposure to intense visible and UV radiation.

Raman spectroscopy and atomic force microscopy study of interfacial polytypism in GaP/Ge(111) heterostructures

NASA Astrophysics Data System (ADS)

Aggarwal, R.; Ingale, Alka A.; Dixit, V. K.

2018-01-01

Effects of lattice and polar/nonpolar mismatch between the GaP layer and Ge(111) substrate are investigated by spatially resolved Raman spectroscopy. The red shifted transverse optical (TO) and longitudinal optical (LO) phonons due to residual strain, along with asymmetry to TO phonon ∼358 cm-1 are observed in GaP/Ge(111). The peak intensity variation of mode ∼358 cm-1 with respect to TO phonon across the crystallographic morphed surface of GaP micro structures is associated with the topographical variations using atomic force microscopy mapping and Raman spectroscopy performed on both in plane and cross-sectional surface. Co-existence of GaP allotropes, i.e. wurtzite phase near heterojunction interface and dominant zinc-blende phase near surface is established using the spatially resolved polarized Raman spectroscopy from the cross sectional surface of heterostructures. This consistently explains effect of surface morphology on Raman spectroscopy from GaP(111). The study shows the way to identify crystalline phases in other advanced semiconductor heterostructures without any specific sample preparation.

Effect of moderate intraocular pressure changes on topographic measurements with confocal scanning laser tomography in patients with glaucoma.

PubMed

Nicolela, Marcelo T; Soares, Adael S; Carrillo, Monica M; Chauhan, Balwantray C; LeBlanc, Raymond P; Artes, Paul H

2006-05-01

To evaluate optic disc topography changes after intraocular pressure (IOP) modulation in patients with glaucoma. Twenty-three patients with glaucoma were studied. Three mean optic disc topography images were obtained with the Heidelberg Retina Tomograph II at baseline and weeks 1, 2, 4, and 8 (visits 1, 2, 3, 4, and 5, respectively). Topical medications were discontinued in the study eye after visit 1 and resumed after visit 4 but maintained in the contralateral control eye. Central corneal thickness was measured at the last visit. Topographic changes were determined by stereometric parameters (rim area and mean cup depth) and at discrete topographic locations using the Topographic Change Analysis program (from the Heidelberg Retina Tomograph II). In the study eyes, IOP increased significantly (5.4 mm Hg at visit 4; P<.001) after withdrawal of topical medications but returned to baseline levels after resuming medications; no statistically significant topographic changes, however, were observed. Moreover, no relationship between change in IOP and stereometric parameters was observed. Central corneal thickness was not associated with changes in optic disc topography induced by IOP modulation. In patients with glaucoma, significant but relatively moderate IOP increases and decreases on the order of 5 mm Hg did not appear to have an effect on optic disc topography.

Nanostructured Substrates for Capturing Circulating Tumor Cells in Whole Blood

NASA Astrophysics Data System (ADS)

Tseng, Hsian-Rong

2009-03-01

Over the past decade, circulating tumor cells (CTCs) has become an emerging ``biomarker'' for detecting early-stage cancer metastasis, predicting patient prognosis, as well as monitoring disease progression and therapeutic outcomes. However, isolation of CTCs has been technically challenging due to the extremely low abundance (a few to hundreds per ml) of CTCs among a high number of hematologic cells (109 per mL) in the blood. Our joint research team at UCLA has developed a new cell capture technology for quantification of CTCs in whole blood samples. Similar to most of the existing approaches, epithelial cell adhesion molecule antibody (anti-EpCAM) was grafted onto the surfaces to distinguish CTCs from the surrounding hematologic cells. The uniqueness of our technology is the use of nanostructured surfaces, which facilitates local topographical interactions between CTCs and substrates at the very first cell/substrate contacting time point. We demonstrated the ability of these nanostructured substrates to capture CTCs in whole blood samples with significantly improved efficiency and selectivity. The successful demonstration of this cell capture technology using brain, breast and prostate cancer cell lines encouraged us to test this approach in clinical setting. We have been able to bond our first validation study with a commercialized technology based on the use of immunomagnetic nanoparticles. A group of clinically well-characterized prostate cancer patients at UCLA hospital have been recruited and tested in parallel by these two technologies.

Navigating neurites utilize cellular topography of Schwann cell somas and processes for optimal guidance

PubMed Central

Lopez-Fagundo, Cristina; Mitchel, Jennifer A.; Ramchal, Talisha D.; Dingle, Yu-Ting L.; Hoffman-Kim, Diane

2013-01-01

The path created by aligned Schwann cells (SCs) after nerve injury underlies peripheral nerve regeneration. We developed geometric bioinspired substrates to extract key information needed for axon guidance by deconstructing the topographical cues presented by SCs. We have previously reported materials that directly replicate SC topography with micro- and nanoscale resolution, but a detailed explanation of the means of directed axon extension on SC topography has not yet been described. Here, using neurite tracing and time-lapse microscopy, we analyzed the SC features that influence axon guidance. Novel poly(dimethylsiloxane) materials, fabricated via photolithography, incorporated bioinspired topographical components with the shapes and sizes of aligned SCs, namely somas and processes, where the length of the processes were varied but the soma geometry and dimensions were kept constant. Rat dorsal root ganglia neurites aligned to all materials presenting bioinspired topography after a 5 days in culture and to bioinspired materials presenting soma and process features after only 17 hours in culture. Key findings of this study were: Neurite response to underlying bioinspired topographical features was time dependent, where at 5 days, neurites aligned most strongly to materials presenting combinations of soma and process features, with higher than average density of either process or soma features; but at 17 hours they aligned more strongly to materials presenting average densities of soma and process features and to materials presenting process features only. These studies elucidate the influence of SC topography on axon guidance in a time-dependent setting and have implications for the optimization of nerve regeneration strategies. PMID:23557939

Compositional Signatures in Acoustic Backscatter Over Vegetated and Unvegetated Mixed Sand-Gravel Riverbeds

NASA Astrophysics Data System (ADS)

Buscombe, D.; Grams, P. E.; Kaplinski, M. A.

2017-10-01

Multibeam acoustic backscatter has considerable utility for remote characterization of spatially heterogeneous bed sediment composition over vegetated and unvegetated riverbeds of mixed sand and gravel. However, the use of high-frequency, decimeter-resolution acoustic backscatter for sediment classification in shallow water is hampered by significant topographic contamination of the signal. In mixed sand-gravel riverbeds, changes in the abiotic composition of sediment (such as homogeneous sand to homogeneous gravel) tend to occur over larger spatial scales than is characteristic of small-scale bedform topography (ripples, dunes, and bars) or biota (such as vascular plants and periphyton). A two-stage method is proposed to filter out the morphological contributions to acoustic backscatter. First, the residual supragrain-scale topographic effects in acoustic backscatter with small instantaneous insonified areas, caused by ambiguity in the local (beam-to-beam) bed-sonar geometry, are removed. Then, coherent scales between high-resolution topography and backscatter are identified using cospectra, which are used to design a frequency domain filter that decomposes backscatter into the (unwanted) high-pass component associated with bedform topography (ripples, dunes, and sand waves) and vegetation, and the (desired) low-frequency component associated with the composition of sediment patches superimposed on the topography. This process strengthens relationships between backscatter and sediment composition. A probabilistic framework is presented for classifying vegetated and unvegetated substrates based on acoustic backscatter at decimeter resolution. This capability is demonstrated using data collected from diverse settings within a 386 km reach of a canyon river whose bed varies among sand, gravel, cobbles, boulders, and submerged vegetation.

Electronic structure and switching behavior of the metastable silicene domain boundary

NASA Astrophysics Data System (ADS)

Oh, Youngtek; Cho, Yeonchoo; Kwon, Hyeokshin; Lee, Junsu; Jeon, Insu; Ko, Wonhee; Kim, Hyo Won; Ku, JiYeon; Kim, Gunn; Suh, Hwansoo; Hwang, Sung Woo

2017-06-01

Silicene, a silicon allotrope with a buckled honeycomb lattice, has been extensively studied in the search for materials with graphene-like properties. Here, we study the domain boundaries of a silicene 4 × 4 superstructure on an Ag(111) surface at the atomic resolution using scanning tunneling microscopy (STM) and spectroscopy (STS) along with density functional theory calculations. The silicene domain boundaries (β-phases) are formed at the interface between misaligned domains (α-phases) and show a bias dependence, forming protrusions or depressions as the sample bias changes. In particular, the STM topographs of the silicene-substrate system at a bias of ˜2.0 V show brightly protruding domain boundaries, which can be explained by an energy state originating from the Si 3s and 3pz orbitals. In addition, the topographs depicting the vicinity of the domain boundaries show that the structure does not follow the buckled geometry of the atomic ball-and-stick model. Inside the domain, STS data showed a step-up at ˜0.4 V, which originated from the Si 3p orbitals. We found this step-up to have shifted, which may be attributed to the strain effect at the interface regions between silver and silicene and between the domain and its boundary upon performing spatially resolved STS measurements. The metastable characteristic of the domain boundary (β-phase) causes changes, such as creation or annihilation, in the buckling structures (switching behavior). The observed low activation energy for the buckling change between distinct states may find applications in the electronic control of properties related to domain boundary structures in silicene.

Compositional signatures in acoustic backscatter over vegetated and unvegetated mixed sand-gravel riverbeds

USGS Publications Warehouse

Buscombe, Daniel; Grams, Paul E.; Kaplinski, Matt A.

2017-01-01

Multibeam acoustic backscatter has considerable utility for remote characterization of spatially heterogeneous bed sediment composition over vegetated and unvegetated riverbeds of mixed sand and gravel. However, the use of high-frequency, decimeter-resolution acoustic backscatter for sediment classification in shallow water is hampered by significant topographic contamination of the signal. In mixed sand-gravel riverbeds, changes in the abiotic composition of sediment (such as homogeneous sand to homogeneous gravel) tend to occur over larger spatial scales than is characteristic of small-scale bedform topography (ripples, dunes, and bars) or biota (such as vascular plants and periphyton). A two-stage method is proposed to filter out the morphological contributions to acoustic backscatter. First, the residual supragrain-scale topographic effects in acoustic backscatter with small instantaneous insonified areas, caused by ambiguity in the local (beam-to-beam) bed-sonar geometry, are removed. Then, coherent scales between high-resolution topography and backscatter are identified using cospectra, which are used to design a frequency domain filter that decomposes backscatter into the (unwanted) high-pass component associated with bedform topography (ripples, dunes, and sand waves) and vegetation, and the (desired) low-frequency component associated with the composition of sediment patches superimposed on the topography. This process strengthens relationships between backscatter and sediment composition. A probabilistic framework is presented for classifying vegetated and unvegetated substrates based on acoustic backscatter at decimeter resolution. This capability is demonstrated using data collected from diverse settings within a 386 km reach of a canyon river whose bed varies among sand, gravel, cobbles, boulders, and submerged vegetation.

Effect of topographic characteristics on compound topographic index for identification of gully channel initiation locations

USDA-ARS?s Scientific Manuscript database

Sediment loads from gully erosion can be a significant sediment source within watershed resulting in major contributions to water quality problems, reduction of crop productivity by removal of nutrient rich top soil, and damaging downstream ecosystems. Areas containing a high probability of forming ...

Measurements of Form and Frictional Drags over a Rough Topographic Bank

DTIC Science & Technology

2014-09-01

processes, Topographic effects Unclassified Unclassified Unclassified UU 24 Hemantha Wijesekera (228) 688-4845 Reset I PAI!fElNTATION RELEASE...sea surface height associated with the sea surface slope resulting from rota- tional effects . Here barotropic pressure gradients associ- ated with...surface elevation are balanced by the Coriolis force; hTi(x, y, t) is the surface elevation resulting from accelerations/decelerations of flow over the

Effect of scene illumination conditions on digital enhancement techniques of multispectral scanner LANDSAT images

NASA Technical Reports Server (NTRS)

Parada, N. D. J.; Novo, E. M. L. M.

1983-01-01

Two sets of MSS/LANDSAT data with solar elevation ranging from 22 deg to 41 deg were used at the Image-100 System to implement the Eliason et alii technique for extracting the topographic modulation component. An unsupervised cluster analysis was used to obtain an average brightness image for each channel. Analysis of the enhanced imaged shows that the technique for extracting topographic modulation component is more appropriated to MSS data obtained under high sun elevation ngles. Low sun elevation increases the variance of each cluster so that the average brightness doesn't represent its albedo proprties. The topographic modulation component applied to low sun elevation angle damages rather than enhance topographic information. Better results were produced for channels 4 and 5 than for channels 6 and 7.

Polymer blend lithography: A versatile method to fabricate nanopatterned self-assembled monolayers.

PubMed

Huang, Cheng; Moosmann, Markus; Jin, Jiehong; Heiler, Tobias; Walheim, Stefan; Schimmel, Thomas

2012-01-01

A rapid and cost-effective lithographic method, polymer blend lithography (PBL), is reported to produce patterned self-assembled monolayers (SAM) on solid substrates featuring two or three different chemical functionalities. For the pattern generation we use the phase separation of two immiscible polymers in a blend solution during a spin-coating process. By controlling the spin-coating parameters and conditions, including the ambient atmosphere (humidity), the molar mass of the polystyrene (PS) and poly(methyl methacrylate) (PMMA), and the mass ratio between the two polymers in the blend solution, the formation of a purely lateral morphology (PS islands standing on the substrate while isolated in the PMMA matrix) can be reproducibly induced. Either of the formed phases (PS or PMMA) can be selectively dissolved afterwards, and the remaining phase can be used as a lift-off mask for the formation of a nanopatterned functional silane monolayer. This "monolayer copy" of the polymer phase morphology has a topographic contrast of about 1.3 nm. A demonstration of tuning of the PS island diameter is given by changing the molar mass of PS. Moreover, polymer blend lithography can provide the possibility of fabricating a surface with three different chemical components: This is demonstrated by inducing breath figures (evaporated condensed entity) at higher humidity during the spin-coating process. Here we demonstrate the formation of a lateral pattern consisting of regions covered with 1H,1H,2H,2H-perfluorodecyltrichlorosilane (FDTS) and (3-aminopropyl)triethoxysilane (APTES), and at the same time featuring regions of bare SiO(x). The patterning process could be applied even on meter-sized substrates with various functional SAM molecules, making this process suitable for the rapid preparation of quasi two-dimensional nanopatterned functional substrates, e.g., for the template-controlled growth of ZnO nanostructures [1].

Process solutions for reducing PR residue over non-planar wafer

NASA Astrophysics Data System (ADS)

Lin, C. H.; Huang, C. H.; Yang, Elvis; Yang, T. H.; Chen, K. C.; Lu, Chih-Yuan

2011-03-01

SAS (Self-Aligned Source) process has been widely adopted on manufacturing NOR Flash devices. To form the SAS structure, the compromise between small space patterning and sufficiently removing photo resist residue in topographical substrate has been a critical challenge as the device scaling down. In this study, photo simulation, layout optimization, resist processing and tri-layer materials were evaluated to form defect-free and highly extendible SAS structure for NOR Flash devices. Photo simulation suggested more coherent light source allowed the incident light to reach the trench bottom that facilitates the removal of photo resist. Mask bias also benefited the process latitude extension for residue-free SAS printing. In the photo resist processing, both lowering the SB (Soft Bake) and raising PEB (Post-Exposure Bake) temperature of photo resist were helpful to broaden the process window but the final pattern profile was not good enough. Thermal flow for pos-exposure pattern shrinkage achieved small CD (Critical Dimension) patterning with residue-free, however the materials loading effect is another issue to be addressed at memory array boundary. Tri-layer scheme demonstrated good results in terms of free from residue, better substrate reflectivity control, enabling smaller space printing to loosen overlay specification and minimizing the poly gate clipping defect. It was finally proposed to combine with etch effort to from the SAS structure. Besides it is also promising to extend to even smaller technology nodes.

Significance of novel bioinorganic anodic aluminum oxide nanoscaffolds for promoting cellular response

PubMed Central

Poinern, Gérrard Eddy Jai; Shackleton, Robert; Mamun, Shariful Islam; Fawcett, Derek

2011-01-01

Tissue engineering is a multidisciplinary field that can directly benefit from the many advancements in nanotechnology and nanoscience. This article reviews a novel biocompatible anodic aluminum oxide (AAO, alumina) membrane in terms of tissue engineering. Cells respond and interact with their natural environment, the extracellular matrix, and the landscape of the substrate. The interaction with the topographical features of the landscape occurs both in the micrometer and nanoscales. If all these parameters are favorable to the cell, the cell will respond in terms of adhesion, proliferation, and migration. The role of the substrate/scaffold is crucial in soliciting a favorable response from the cell. The size and type of surface feature can directly influence the response and behavior of the cell. In the case of using an AAO membrane, the surface features and porosity of the membrane can be dictated at the nanoscale during the manufacturing stage. This is achieved by using general laboratory equipment to perform a relatively straightforward electrochemical process. During this technique, changing the operational parameters of the process directly controls the nanoscale features produced. For example, the pore size, pore density, and, hence, density can be effectively controlled during the synthesis of the AAO membrane. In addition, being able to control the pore size and porosity of a biomaterial such as AAO significantly broadens its application in tissue engineering. PMID:24198483

Significance of novel bioinorganic anodic aluminum oxide nanoscaffolds for promoting cellular response.

PubMed

Poinern, Gérrard Eddy Jai; Shackleton, Robert; Mamun, Shariful Islam; Fawcett, Derek

2011-01-14

Tissue engineering is a multidisciplinary field that can directly benefit from the many advancements in nanotechnology and nanoscience. This article reviews a novel biocompatible anodic aluminum oxide (AAO, alumina) membrane in terms of tissue engineering. Cells respond and interact with their natural environment, the extracellular matrix, and the landscape of the substrate. The interaction with the topographical features of the landscape occurs both in the micrometer and nanoscales. If all these parameters are favorable to the cell, the cell will respond in terms of adhesion, proliferation, and migration. The role of the substrate/scaffold is crucial in soliciting a favorable response from the cell. The size and type of surface feature can directly influence the response and behavior of the cell. In the case of using an AAO membrane, the surface features and porosity of the membrane can be dictated at the nanoscale during the manufacturing stage. This is achieved by using general laboratory equipment to perform a relatively straightforward electrochemical process. During this technique, changing the operational parameters of the process directly controls the nanoscale features produced. For example, the pore size, pore density, and, hence, density can be effectively controlled during the synthesis of the AAO membrane. In addition, being able to control the pore size and porosity of a biomaterial such as AAO significantly broadens its application in tissue engineering.

Biological Behaviour and Enhanced Anticorrosive Performance of the Nitrided Superelastic Ti-23Nb-0.7Ta-2Zr-0.5N Alloy

PubMed Central

Osiceanu, Petre; Gloriant, Thierry

2015-01-01

The influence of gas nitriding surface treatment on the superelastic Ti-23Nb-0.7Ta-2Zr-0.5N alloy was evaluated. A thorough characterization of bare and nitrided Ti-based alloy and pure Ti was performed in terms of surface film composition and morphology, electrochemical behaviour, and short term osteoblast response. XPS analysis showed that the nitriding treatment strongly influenced the composition (nitrides and oxynitrides) and surface properties both of the substrate and of the bulk alloy. SEM images revealed that the nitrided surface appears as a similar dotted pattern caused by the formation of N-rich domains coexisting with less nitrided domains, while before treatment only topographical features could be observed. All the electrochemical results confirmed the high chemical stability of the nitride and oxynitride coating and the superiority of the applied treatment. The values of the corrosion parameters ascertained the excellent corrosion resistance of the coated alloy in the real functional conditions from the human body. Cell culture experiments with MG63 osteoblasts demonstrated that the studied biomaterials do not elicit any toxic effects and support cell adhesion and enhanced cell proliferation. Altogether, these data indicate that the nitrided Ti-23Nb-0.7Ta-2Zr-0.5N alloy is the most suitable substrate for application in bone implantology. PMID:26583096

Can dynamite-blasted reefs recover? A novel, low-tech approach to stimulating natural recovery in fish and coral populations.

PubMed

Raymundo, L J; Maypa, A P; Gomez, E D; Cadiz, Pablina

2007-07-01

Throughout Southeast Asia, blast fishing creates persistent rubble fields with low coral cover and depauperate fish communities. We stabilized a 20-year-old rubble field in a Marine Protected Area in the Philippines, using plastic mesh and rock piles in replicated 17.5m(2) plots, thereby increasing topographic complexity, fish habitat, and recruitment substrate surface area. Multivariate analysis revealed fish community shifts within the rehabilitated area from that characteristic of rubble fields to one similar to the adjacent healthy reef within three years, as measured by changes in fish abundance and body size. Coral recruitment and percent cover increased over time, with 63.5% recruit survivorship within plots, compared with 6% on rubble. Our low-cost approach created a stable substrate favoring natural recovery processes. Both rehabilitation and the elimination of poaching were integral to success, emphasizing the synergism between the two and the need to incorporate both when considering mitigation.

Preparing Al-Mg Substrate for Thermal Spraying: Evaluation of Surface State After Different Pretreatments

NASA Astrophysics Data System (ADS)

Lukauskaitė, R.; Valiulis, A. V.; Černašėjus, O.; Škamat, J.; Rębiś, J. A.

2016-08-01

The article deals with the pretreatment technique for preparing the surface of aluminum alloy EN AW 5754 before thermal spray. The surface after different pretreatments, including degreasing with acetone, chemical etching with acidic and alkali solutions, grit-blasting, cathodic cleaning, and some combinations of these techniques, has been studied. The investigation of pre-treated surfaces covered the topographical study (using scanning electron microscopy, atomic force microscopy, and 3D profilometry), the chemical analysis by x-ray photoelectron spectroscopy, the evaluation of surface wettability (sessile drop method), and the assessment of surface free energy. Compared with all the techniques used in present work, the cathodic cleaning and its combination with grit-blasting provide the most preferable chemistry of the surface. Due to the absence of hydroxides at the surface and, possible, due to the diffusion of magnesium to the surface of substrate, the surface wettability and the surface free energy have been significantly improved. No direct correlation between the surface topography and the surface wettability has been established.

Piezo-thermal Probe Array for High Throughput Applications

PubMed Central

Gaitas, Angelo; French, Paddy

2012-01-01

Microcantilevers are used in a number of applications including atomic-force microscopy (AFM). In this work, deflection-sensing elements along with heating elements are integrated onto micromachined cantilever arrays to increase sensitivity, and reduce complexity and cost. An array of probes with 5–10 nm gold ultrathin film sensors on silicon substrates for high throughput scanning probe microscopy is developed. The deflection sensitivity is 0.2 ppm/nm. Plots of the change in resistance of the sensing element with displacement are used to calibrate the probes and determine probe contact with the substrate. Topographical scans demonstrate high throughput and nanometer resolution. The heating elements are calibrated and the thermal coefficient of resistance (TCR) is 655 ppm/K. The melting temperature of a material is measured by locally heating the material with the heating element of the cantilever while monitoring the bending with the deflection sensing element. The melting point value measured with this method is in close agreement with the reported value in literature. PMID:23641125

Analysis and characterization of Cu2CdSnS4 quaternary alloy nanostructures deposited on GaN

NASA Astrophysics Data System (ADS)

Odeh, Ali Abu; Al-Douri, Y.; Ameri, M.; Bouhemadou, A.

2018-06-01

Through using spin coating technique, Cu2CdSnS4 (CCTS) quaternary alloy nanostructures were successfully deposited on GaN substrate using a wide range of spin coating speeds; 1500, 2000, 2500, 3000 and 3500 RPM at annealing temperature 300 °C. The optical properties were investigated through UV-vis which revealed the changing of energy band gap as the spin coating speed increases, in addition, to verify specific models of refractive index and optical dielectric constant. The structural properties were studied by X-ray diffraction which indicated that the number and intensity of the peaks were changed as the spin coating speed changes. The morphological and topographical studies of CCTS were elaborated by field emission-scanning electron microscopy and atomic force microscopy. The obtained results suggest that CCTS nanostructures deposited on GaN substrate are very suitable for optoelectronic applications, that are in accordance with the available theoretical and experimental data.

Self-assembled molecular magnets on patterned silicon substrates: bridging bio-molecules with nanoelectronics.

PubMed

Chang, Chia-Ching; Sun, Kien Wen; Lee, Shang-Fan; Kan, Lou-Sing

2007-04-01

The paper reports the methods of preparing molecular magnets and patterning of the molecules on a semiconductor surface. A highly magnetically aligned metallothionein containing Mn and Cd (Mn,Cd-MT-2) is first synthesized, and the molecules are then placed into nanopores prepared on silicon (001) surfaces using electron beam lithography and reactive ion-etching techniques. We have observed the self-assemble growth of the MT molecules on the patterned Si surface such that the MT molecules have grown into rod or ring type three-dimensional nanostructures, depending on the patterned nanostructures on the surface. We also provide scanning electron microscopy, atomic force microscopy, and magnetic force microscope studies of the molecular nanostructures. This engineered molecule shows molecular magnetization and is biocompatible with conventional semiconductors. These features make Mn,Cd-MT-2 a good candidate for biological applications and sensing sources of new nanodevices. Using molecular self-assembly and topographical patterning of the semiconductor substrate, we can close the gap between bio-molecules and nanoelectronics built into the semiconductor chip.

The role of tortuosity on ion conduction in block copolymer electrolyte thin films

NASA Astrophysics Data System (ADS)

Kambe, Yu; Arges, Christopher G.; Nealey, Paul F.

This talk discusses the role of grain tortuosity on ion conductivity in block copolymer electrolyte (BCE) thin films. In particular, we studied lamellae forming BCEs with both domains oriented perpendicular to the substrate surface and connected directly from one electrode to another - i.e., tortuosity of one. The BCE is composed of ion-conducting, poly(2-vinyl n-methylpyridinium) blocks and non-ionic polystyrene blocks. Prior to creating the BCE, the pristine block copolymer, poly(styrene- b-2-vinyl pyridine), was directly self-assembled (DSA) on topographical or chemical patterns via graphoepitaxy and chemoepitaxy. A chemical vapor infiltration reaction modified the P2VP block into positively charged, fixed quaternary ammonium groups paired with mobile counteranions. The graphoepitaxy process utilized topographical interdigitated gold nanoelectrodes (100s of nanometers spacing between electrodes) created via e-beam lithography. Alternatively, chemical patterns had gold electrodes incorporated into them with 10s to 100s of microns spacing using conventional optical lithography. The interdigitated gold electrodes enabled in-plane ion conductivity measurements of the DSA BCEs to study the role of grain tortuosity on ion conductivity. U.S. Department of Energy Office of Science: Contract No. DE-AC02-06CH11357.

Character of shell beds flanking Herod Point shoal, southeastern Long Island Sound, New York

USGS Publications Warehouse

Poppe, L.J.; Williams, S.J.; Babb, Ivar G.

2011-01-01

High biogenic productivity, strong tidal currents, shoal topography, and short transport distances combine to favor shell-bed formation along the lower flanks of a cape-associated shoal off Herod Point on Long Island, New York. This shell bed has a densely packed, clast-supported fabric composed largely of undegraded surf clam (Spisula solidissima) valves. It is widest along the central part of the western flank of the shoal where topographic gradients are steep and a stronger flood tide results in residual flow. The bed is narrower and thinner toward the landward margins where currents are too weak to transport larger valves and topographic gradients are gentle, limiting bed-load transport mechanisms by which the shells are concentrated. Reconnaissance mapping off Roanoke Point suggests that shell beds are also present at the other cape-associated shoals off northeastern Long Island, where relatively similar geomorphic and oceanographic conditions exist. These shell beds are important to the Long Island Sound ecosystem because they provide complex benthic habitats of rough and hard substrates at the boundary between the muddy basin floor and mobile sand of the shoals. ?? 2011, the Coastal Education & Research Foundation (CERF).

Geologic implications and potential hazards of scour depressions on bering shelf, Alaska

USGS Publications Warehouse

Larsen, M.C.; Nelson, H.; Thor, D.R.

1979-01-01

Flat-bottomed depression 50-150 m in diameter and 60-80 cm deep occur in the floor of Norton Sound, Bering Sea. These large erosional bedforms and associated current ripples are found in areas where sediment grain size is 0.063-0.044 mm (4-4.5 ??), speeds of bottom currents are greatest (20-30 cm/s mean speeds under nonstorm conditions, 70 cm/s during typical storms), circulation of water is constricted by major topographic shoals (kilometers in scale), and small-scale topographic disruptions, such as ice gouges, occur locally on slopes of shoals. These local obstructions on shoals appear to disrupt currents, causing separation of flow and generating eddies that produce large-scale scour. Offshore artificial structures also may disrupt bottom currents in these same areas and have the potential to generate turbulence and induce extensive scour in the area of disrupted flow. The size and character of natural scour depressions in areas of ice gouging suggest that large-scale regions of scour may develop from enlargement of local scour sites around pilings, platforms, or pipelines. Consequently, loss of substrate support for pipelines and gravity structures is possible during frequent autumn storms. ?? 1979 Springer-Verlag New York Inc.

Wrinkled, wavelength-tunable graphene-based surface topographies for directing cell alignment and morphology

PubMed Central

Wang, Zhongying; Tonderys, Daniel; Leggett, Susan E.; Williams, Evelyn Kendall; Kiani, Mehrdad T.; Steinberg, Ruben Spitz; Qiu, Yang; Wong, Ian Y.; Hurt, Robert H.

2015-01-01

Textured surfaces with periodic topographical features and long-range order are highly attractive for directing cell-material interactions. They mimic physiological environments more accurately than planar surfaces and can fundamentally alter cell alignment, shape, gene expression, and cellular assembly into superstructures or microtissues. Here we demonstrate for the first time that wrinkled graphene-based surfaces are suitable as textured cell attachment substrates, and that engineered wrinkling can dramatically alter cell alignment and morphology. The wrinkled surfaces are fabricated by graphene oxide wet deposition onto pre-stretched elastomers followed by relaxation and mild thermal treatment to stabilize the films in cell culture medium. Multilayer graphene oxide films form periodic, delaminated buckle textures whose wavelengths and amplitudes can be systematically tuned by variation in the wet deposition process. Human and murine fibroblasts attach to these textured films and remain viable, while developing pronounced alignment and elongation relative to those on planar graphene controls. Compared to lithographic patterning of nanogratings, this method has advantages in the simplicity and scalability of fabrication, as well as the opportunity to couple the use of topographic cues with the unique conductive, adsorptive, or barrier properties of graphene materials for functional biomedical devices. PMID:25848137

Producing lasting amphiphobic building surfaces with self-cleaning properties

NASA Astrophysics Data System (ADS)

Facio, Dario S.; Carrascosa, Luis A. M.; Mosquera, María J.

2017-06-01

Nowadays, producing building surfaces that prevent water and oil uptake and which present self-cleaning activity is still a challenge. In this study, amphiphobic (superhydrophobic and oleophobic) building surfaces were successfully produced. A simple and low-cost process was developed, which is applicable to large-scale building surfaces, according the following procedure: (1) by spraying a SiO2 nanocomposite which produces a closely-packed nanoparticle uniform topography; (2) by functionalizing the previous coating with a fluorinated alkoxysilane, producing high hydrophobicity and oleophobicity. The formation of a Cassie-Baxter regime, in which air pockets could be trapped between the aggregates of particles, was confirmed by topographic study. The building surface demonstrated an excellent self-cleaning performance. Finally, the surface presented lasting superhydrophobicity with high stability against successive attachment/detachment force cycles. This high durability can be explained by the effective grafting of the silica nanocomposite coating skeleton with the substrate, and with the additional fluorinated coating produced by condensation reactions.

Regulation of osteogenesis by micro/nano hierarchical titanium surfaces through a Rock-Wnt5a feedback loop.

PubMed

Yu, Yonglin; Shen, Xinkun; Liu, Junjie; Hu, Yan; Ran, Qichun; Mu, Caiyun; Cai, Kaiyong

2018-05-28

Titanium substrates with micro/nano hierarchical features could positively mediate the osteogenesis of a titanium implant; nevertheless, the underlying molecular mechanism needs to be further revealed. In this work, we fabricated a micro/nano hierarchically structured Ti (MNT) sample and attempted to evaluate its topography-mediated biological effects and potential molecular mechanisms in vitro. The results proved that MNT could not only affect cell morphology and osteogenic differentiation, but also regulate ROCK activity cell biological functions of osteoblasts involved in ROCK activation, β-catenin accumulation, and high-Wnt5a expression in respect to topographical features. Moreover, blockade of ROCK activation resulted in significant inhibition of cell differentiation and Wnt5a expression. Furthermore, the anti-Wnt5a significantly down-regulated ROCK activity. In short, these results indicate the important role of ROCK-Wnt5a feedback loop in regulating cell differentiation by topographies. Copyright © 2018. Published by Elsevier B.V.

Gadolinium nanoparticle based switchable mirrors: quenching of hydrogenation-dehydrogenation hysteresis.

PubMed

Aruna, I; Mehta, B R; Malhotra, L K

2007-06-01

A continuous and reversible 'structural, optical, and electronic' transition between the reflecting metallic dihydride and transparent semiconducting trihydride states observed in rare earth metals on hydrogenation make these materials and their hydrides suitable for switchable mirror, sensing, and other technological applications. Recently Pd capped Gd nanoparticle based 'new generation' switchable mirrors have been fabricated with extended color neutrality, better optical contrast, and faster kinetics in comparison to the polycrystalline, epitaxial, alloy, and multilayer films. The present report aims at investigating the effect of nanoparticle nature on the hydrogenation-dehydrogenation hysteresis in switchable mirrors by carrying out in situ measurement of optical transmittance and electrode potentials during electrochemical hydrogen loading-deloading of Gd nanoparticle samples. Interestingly, Gd nanoparticle samples were observed to exhibit quenched hysteresis. The quenching of hysteresis in hydrogen-induced properties has been attributed to the absence of structural transition upon hydrogenation, reduction in topographical interlocking of the grains and elimination of lateral clamping of the slack nanoparticle layer to the substrate.

Effects of Na Doping on Structural, Optical, and Electronic Properties of ZnO Thin Films Fabricated by Sol-Gel Technique

NASA Astrophysics Data System (ADS)

Fan, Heliang; Yao, Zhen; Xu, Cheng; Wang, Xinqiang; Yu, Zhichao

2018-04-01

Undoped and Na-doped ZnO thin films were fabricated by sol-gel technique on quartz glass substrates and annealed at 500°C for 1 h. The structural properties of the films were characterized using x-ray diffraction analysis, which revealed hexagonal wurtzite structure with no peaks corresponding to Na2O or other Na phases being found. Surface morphology observations by scanning electron microscopy revealed that the crystallite size and topographical properties of the ZnO films were influenced by the Na doping concentration. X-ray photoelectron spectra revealed presence of Na+ in ZnO regime. The transmittance spectra indicated that the average transmittance of Na-doped ZnO film was above 80% in the visible range, superior to that of the undoped film. There was a blue-shift in the ultraviolet absorption edge with increase of the Na content. Photoluminescence spectra illustrated two peaks, corresponding to ultraviolet near-band-edge and visible emission.

Nanoscale observation of local bound charges of patterned protein arrays by scanning force microscopy

NASA Astrophysics Data System (ADS)

Oh, Y. J.; Jo, W.; Kim, S.; Park, S.; Kim, Y. S.

2008-09-01

A protein patterned surface using micro-contact printing methods has been investigated by scanning force microscopy. Electrostatic force microscopy (EFM) was utilized for imaging the topography and detecting the electrical properties such as the local bound charge distribution of the patterned proteins. It was found that the patterned IgG proteins are arranged down to 1 µm, and the 90° rotation of patterned anti-IgG proteins was successfully undertaken. Through the estimation of the effective areas, it was possible to determine the local bound charges of patterned proteins which have opposite electrostatic force behaviors. Moreover, we studied the binding probability between IgG and anti-IgG in a 1 µm2 MIMIC system by topographic and electrostatic signals for applicable label-free detections. We showed that the patterned proteins can be used for immunoassay of proteins on the functional substrate, and that they can also be used for bioelectronics device application, indicating distinct advantages with regard to accuracy and a label-free detection.

Ground motion in the presence of complex Topography II: Earthquake sources and 3D simulations

USGS Publications Warehouse

Hartzell, Stephen; Ramirez-Guzman, Leonardo; Meremonte, Mark; Leeds, Alena L.

2017-01-01

Eight seismic stations were placed in a linear array with a topographic relief of 222 m over Mission Peak in the east San Francisco Bay region for a period of one year to study topographic effects. Seventy‐two well‐recorded local earthquakes are used to calculate spectral amplitude ratios relative to a reference site. A well‐defined fundamental resonance peak is observed with individual station amplitudes following the theoretically predicted progression of larger amplitudes in the upslope direction. Favored directions of vibration are also seen that are related to the trapping of shear waves within the primary ridge dimensions. Spectral peaks above the fundamental one are also related to topographic effects but follow a more complex pattern. Theoretical predictions using a 3D velocity model and accurate topography reproduce many of the general frequency and time‐domain features of the data. Shifts in spectral frequencies and amplitude differences, however, are related to deficiencies of the model and point out the importance of contributing factors, including the shear‐wave velocity under the topographic feature, near‐surface velocity gradients, and source parameters.

CFD Prediction on the Pressure Distribution and Streamlines around an Isolated Single-Storey House Considering the Effect of Topographic Characteristics

NASA Astrophysics Data System (ADS)

Abdullah, J.; Zaini, S. S.; Aziz, M. S. A.; Majid, T. A.; Deraman, S. N. C.; Yahya, W. N. W.

2018-04-01

Single-storey houses are classified as low rise building and vulnerable to damages under windstorm event. This study was carried out with the aim to investigate the pressure distribution and streamlines around an isolated house by considering the effect of terrain characteristics. The topographic features such as flat, depression, ridge, and valley, are considered in this study. This simulation were analysed with Ansys FLUENT 14.0 software package. The result showed the topography characteristics influence the value of pressure coefficient and streamlines especially when the house was located at ridge terrain. The findings strongly suggested that wind analysis should include all topographic features in the analysis in order to establish the true wind force exerted on any structure.

Tropical forest tree stands characterization with L-band polarimetric radar

NASA Technical Reports Server (NTRS)

Wu, Shih-Tseng

1990-01-01

The effectiveness of using L-band polarimetric data to determine tropical tree-stand parameters is discussed with specific attention given to the correction of the radar data. Tree-parameter data from ground studies is compared to L-band polarimetric data (in both uncorrected and topographically corrected forms) for two test areas. The test sites are at two different elevations but both include 81 test plots with topographic data and tree-characteristic data given. Synthetic-aperture radar (SAR) data are found to be related to bole volume and tree volume, and the topographically corrected data show results similar to the uncorrected data. Similar r-values are given for both data sets because the data with incidence-angle values below 35 and above 55 are removed. Topographical correction is important when local incidence angles exceed the limits.

Modeling of light distribution in the brain for topographical imaging

NASA Astrophysics Data System (ADS)

Okada, Eiji; Hayashi, Toshiyuki; Kawaguchi, Hiroshi

2004-07-01

Multi-channel optical imaging system can obtain a topographical distribution of the activated region in the brain cortex by a simple mapping algorithm. Near-infrared light is strongly scattered in the head and the volume of tissue that contributes to the change in the optical signal detected with source-detector pair on the head surface is broadly distributed in the brain. This scattering effect results in poor resolution and contrast in the topographic image of the brain activity. We report theoretical investigations on the spatial resolution of the topographic imaging of the brain activity. The head model for the theoretical study consists of five layers that imitate the scalp, skull, subarachnoid space, gray matter and white matter. The light propagation in the head model is predicted by Monte Carlo simulation to obtain the spatial sensitivity profile for a source-detector pair. The source-detector pairs are one dimensionally arranged on the surface of the model and the distance between the adjoining source-detector pairs are varied from 4 mm to 32 mm. The change in detected intensity caused by the absorption change is obtained by Monte Carlo simulation. The position of absorption change is reconstructed by the conventional mapping algorithm and the reconstruction algorithm using the spatial sensitivity profiles. We discuss the effective interval between the source-detector pairs and the choice of reconstruction algorithms to improve the topographic images of brain activity.

Dissociable effects of reward and expectancy during evaluative feedback processing revealed by topographic ERP mapping analysis.

PubMed

Gheza, Davide; Paul, Katharina; Pourtois, Gilles

2017-11-24

Evaluative feedback provided during performance monitoring (PM) elicits either a positive or negative deflection ~250-300ms after its onset in the event-related potential (ERP) depending on whether the outcome is reward-related or not, as well as expected or not. However, it remains currently unclear whether these two deflections reflect a unitary process, or rather dissociable effects arising from non-overlapping brain networks. To address this question, we recorded 64-channel EEG in healthy adult participants performing a standard gambling task where valence and expectancy were manipulated in a factorial design. We analyzed the feedback-locked ERP data using a conventional ERP analysis, as well as an advanced topographic ERP mapping analysis supplemented with distributed source localization. Results reveal two main topographies showing opposing valence effects, and being differently modulated by expectancy. The first one was short-lived and sensitive to no-reward irrespective of expectancy. Source-estimation associated with this topographic map comprised mainly regions of the dorsal anterior cingulate cortex. The second one was primarily driven by reward, had a prolonged time-course and was monotonically influenced by expectancy. Moreover, this reward-related topographical map was best accounted for by intracranial generators estimated in the posterior cingulate cortex. These new findings suggest the existence of dissociable brain systems depending on feedback valence and expectancy. More generally, they inform about the added value of using topographic ERP mapping methods, besides conventional ERP measurements, to characterize qualitative changes occurring in the spatio-temporal dynamic of reward processing during PM. Copyright © 2017 Elsevier B.V. All rights reserved.

VFMA: Topographic Analysis of Sensitivity Data From Full-Field Static Perimetry

PubMed Central

Weleber, Richard G.; Smith, Travis B.; Peters, Dawn; Chegarnov, Elvira N.; Gillespie, Scott P.; Francis, Peter J.; Gardiner, Stuart K.; Paetzold, Jens; Dietzsch, Janko; Schiefer, Ulrich; Johnson, Chris A.

2015-01-01

Purpose: To analyze static visual field sensitivity with topographic models of the hill of vision (HOV), and to characterize several visual function indices derived from the HOV volume. Methods: A software application, Visual Field Modeling and Analysis (VFMA), was developed for static perimetry data visualization and analysis. Three-dimensional HOV models were generated for 16 healthy subjects and 82 retinitis pigmentosa patients. Volumetric visual function indices, which are measures of quantity and comparable regardless of perimeter test pattern, were investigated. Cross-validation, reliability, and cross-sectional analyses were performed to assess this methodology and compare the volumetric indices to conventional mean sensitivity and mean deviation. Floor effects were evaluated by computer simulation. Results: Cross-validation yielded an overall R2 of 0.68 and index of agreement of 0.89, which were consistent among subject groups, indicating good accuracy. Volumetric and conventional indices were comparable in terms of test–retest variability and discriminability among subject groups. Simulated floor effects did not negatively impact the repeatability of any index, but large floor changes altered the discriminability for regional volumetric indices. Conclusions: VFMA is an effective tool for clinical and research analyses of static perimetry data. Topographic models of the HOV aid the visualization of field defects, and topographically derived indices quantify the magnitude and extent of visual field sensitivity. Translational Relevance: VFMA assists with the interpretation of visual field data from any perimetric device and any test location pattern. Topographic models and volumetric indices are suitable for diagnosis, monitoring of field loss, patient counseling, and endpoints in therapeutic trials. PMID:25938002

a Standardized Approach to Topographic Data Processing and Workflow Management

NASA Astrophysics Data System (ADS)

Wheaton, J. M.; Bailey, P.; Glenn, N. F.; Hensleigh, J.; Hudak, A. T.; Shrestha, R.; Spaete, L.

2013-12-01

An ever-increasing list of options exist for collecting high resolution topographic data, including airborne LIDAR, terrestrial laser scanners, bathymetric SONAR and structure-from-motion. An equally rich, arguably overwhelming, variety of tools exists with which to organize, quality control, filter, analyze and summarize these data. However, scientists are often left to cobble together their analysis as a series of ad hoc steps, often using custom scripts and one-time processes that are poorly documented and rarely shared with the community. Even when literature-cited software tools are used, the input and output parameters differ from tool to tool. These parameters are rarely archived and the steps performed lost, making the analysis virtually impossible to replicate precisely. What is missing is a coherent, robust, framework for combining reliable, well-documented topographic data-processing steps into a workflow that can be repeated and even shared with others. We have taken several popular topographic data processing tools - including point cloud filtering and decimation as well as DEM differencing - and defined a common protocol for passing inputs and outputs between them. This presentation describes a free, public online portal that enables scientists to create custom workflows for processing topographic data using a number of popular topographic processing tools. Users provide the inputs required for each tool and in what sequence they want to combine them. This information is then stored for future reuse (and optionally sharing with others) before the user then downloads a single package that contains all the input and output specifications together with the software tools themselves. The user then launches the included batch file that executes the workflow on their local computer against their topographic data. This ZCloudTools architecture helps standardize, automate and archive topographic data processing. It also represents a forum for discovering and sharing effective topographic processing workflows.

Micro-topographic hydrologic variability due to vegetation acclimation under climate change

NASA Astrophysics Data System (ADS)

Le, P. V.; Kumar, P.

2012-12-01

Land surface micro-topography and vegetation cover have fundamental effects on the land-atmosphere interactions. The altered temperature and precipitation variability associated with climate change will affect the water and energy processes both directly and that mediated through vegetation. Since climate change induces vegetation acclimation that leads to shifts in evapotranspiration and heat fluxes, it further modifies microclimate and near-surface hydrological processes. In this study, we investigate the impacts of vegetation acclimation to climate change on micro-topographic hydrologic variability. The ability to accurately predict these impacts requires the simultaneous considerations of biochemical, ecophysiological and hydrological processes. A multilayer canopy-root-soil system model coupled with a conjunctive surface-subsurface flow model is used to capture the acclimatory responses and analyze the changes in dynamics of structure and connectivity of micro-topographic storage and in magnitudes of runoff. The study is performed using Light Detection and Ranging (LiDAR) topographic data in the Birds Point-New Madrid floodway in Missouri, U.S.A. The result indicates that both climate change and its associated vegetation acclimation play critical roles in altering the micro-topographic hydrological responses.

Adapting forest management to climate change using bioclimate models with topographic drivers

Treesearch

Gerald E. Rehfeldt; James J. Worrall; Suzanne B. Marchetti; Nicholas L. Crookston

2015-01-01

Bioclimate models incorporating topographic predictors as surrogates for microclimate effects are developed for Populus tremuloides and Picea engelmannii to provide the fine-grained specificity to local terrain required for adapting management of three Colorado (USA) national forests (1.28 million ha) and their periphery to climate change. Models were built with the...

Substrate topography: A valuable in vitro tool, but a clinical red herring for in vivo tenogenesis.

PubMed

English, Andrew; Azeem, Ayesha; Spanoudes, Kyriakos; Jones, Eleanor; Tripathi, Bhawana; Basu, Nandita; McNamara, Karrina; Tofail, Syed A M; Rooney, Niall; Riley, Graham; O'Riordan, Alan; Cross, Graham; Hutmacher, Dietmar; Biggs, Manus; Pandit, Abhay; Zeugolis, Dimitrios I

2015-11-01

Controlling the cell-substrate interactions at the bio-interface is becoming an inherent element in the design of implantable devices. Modulation of cellular adhesion in vitro, through topographical cues, is a well-documented process that offers control over subsequent cellular functions. However, it is still unclear whether surface topography can be translated into a clinically functional response in vivo at the tissue/device interface. Herein, we demonstrated that anisotropic substrates with a groove depth of ∼317nm and ∼1988nm promoted human tenocyte alignment parallel to the underlying topography in vitro. However, the rigid poly(lactic-co-glycolic acid) substrates used in this study upregulated the expression of chondrogenic and osteogenic genes, indicating possible tenocyte trans-differentiation. Of significant importance is that none of the topographies assessed (∼37nm, ∼317nm and ∼1988nm groove depth) induced extracellular matrix orientation parallel to the substrate orientation in a rat patellar tendon model. These data indicate that two-dimensional imprinting technologies are useful tools for in vitro cell phenotype maintenance, rather than for organised neotissue formation in vivo, should multifactorial approaches that consider both surface topography and substrate rigidity be established. Herein, we ventured to assess the influence of parallel groves, ranging from nano- to micro-level, on tenocytes response in vitro and on host response using a tendon and a subcutaneous model. In vitro analysis indicates that anisotropically ordered micro-scale grooves, as opposed to nano-scale grooves, maintain physiological cell morphology. The rather rigid PLGA substrates appeared to induce trans-differentiation towards chondrogenic and/or steogenic lineage, as evidence by TILDA gene analysis. In vivo data in both tendon and subcutaneous models indicate that none of the substrates induced bidirectional host cell and tissue growth. Collective, these observations indicate that two-dimensional imprinting technologies are useful tools for in vitro cell phenotype maintenance, rather than for directional neotissue formation, should multifactorial approaches that consider both surface topography and substrate rigidity be established. Copyright © 2015 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

The microstructure of laterally seeded silicon-on-oxide

NASA Astrophysics Data System (ADS)

Pinizzotto, R. F.; Lam, H. W.; Vaandrager, B. L.

1982-03-01

The production of large scale integrated circuits in thin silicon films on insulating substrates is currently of much interest in the electronics industry. One of the most promising techniques of forming this composite structure is by lateral seeding. We have used optical microscopy and transmission electron microscopy to characterize the microstructure of silicon-on-oxide formed by scanning CW laser induced lateral epitaxy. The primary defects are dislocations. Dislocation rearrangement leads to the formation of both small angle boundaries (stable, regular dislocation arrays) and grain boundaries. The grains were found to be misoriented to the <100> direction perpendicular to the film plane by ≤ 4° and to the <100> directions in the plane of the film by ≤ 2°. Internal reflection twins are a common defect. Microtwinning was found to occur at the vertical step caused by the substrate-oxide interface if the substrate to oxide step height was > 120 nm. The microstructure is continuous across successive scan lines. Microstructural defects are found to initiate at the same topographical location in different oxide pads. We propose that this is due to the meeting of two crystallization growth fronts. The liquid silicon between the fronts causes large stresses in this area because of the 9% volume increase during solidification. The defects observed in the bulk may form by a similar mechanism or by dislocation generation at substrate-oxide interface irregularities. The models predict that slower growth leads to improved material quality. This has been observed experimentally.

Mapping Arid Vegetation Species Distributions in the White Mountains, Eastern California, Using AVIRIS, Topography, and Geology

NASA Technical Reports Server (NTRS)

VandeVen, C.; Weiss, S. B.

2001-01-01

Our challenge is to model plant species distributions in complex montane environments using disparate sources of data, including topography, geology, and hyperspectral data. From an ecologist's point of view, species distributions are determined by local environment and disturbance history, while spectral data are 'ancillary.' However, a remote sensor's perspective says that spectral data provide picture of what vegetation is there, topographic and geologic data are ancillary. In order to bridge the gap, all available data should be used to get the best possible prediction of species distributions using complex multivariate techniques implemented on a GIS. Vegetation reflects local climatic and nutrient conditions, both of which can be modeled, allowing predictive mapping of vegetation distributions. Geologic substrate strongly affects chemical, thermal, and physical properties of soils, while climatic conditions are determined by local topography. As elevation increases, precipitation increases and temperature decreases. Aspect, slope, and surrounding topography determine potential insolation, so that south-facing slopes are warmer and north-facing slopes cooler at a given elevation. Topographic position (ridge, slope, canyon, or meadow) and slope angle affect sediment accumulation and soil depth. These factors combine as complex environmental gradients, and underlie many features of plant distributions. Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data, digital elevation models, digitized geologic maps, and 378 ground control points were used to predictively map species distributions in the central and southern White Mountains, along the western boundary of the Basin and Range province. Minimum Noise Fraction (MNF) bands were calculated from the visible and near-infrared AVIRIS bands, and combined with digitized geologic maps and topographic variables using Canonical Correspondence Analysis (CCA). CCA allows for modeling species 'envelopes' in multidimensional environmental space, which can then be projected across entire landscapes.

Evaluating Topographic Effects on Ground Deformation: Insights from Finite Element Modeling

NASA Astrophysics Data System (ADS)

Ronchin, Erika; Geyer, Adelina; Martí, Joan

2015-07-01

Ground deformation has been demonstrated to be one of the most common signals of volcanic unrest. Although volcanoes are commonly associated with significant topographic relief, most analytical models assume the Earth's surface as flat. However, it has been confirmed that this approximation can lead to important misinterpretations of the recorded surface deformation data. Here we perform a systematic and quantitative analysis of how topography may influence ground deformation signals generated by a spherical pressure source embedded in an elastic homogeneous media and how these variations correlate with the different topographic parameters characterizing the terrain form (e.g., slope, aspect, curvature). For this, we bring together the results presented in previous published papers and complement them with new axisymmetric and 3D finite element (FE) model results. First, we study, in a parametric way, the influence of a volcanic edifice centered above the pressure source axis. Second, we carry out new 3D FE models simulating the real topography of three different volcanic areas representative of topographic scenarios common in volcanic regions: Rabaul caldera (Papua New Guinea) and the volcanic islands of Tenerife and El Hierro (Canary Islands). The calculated differences are then correlated with a series of topographic parameters. The final aim is to investigate the artifacts that might arise from the use of half-space models at volcanic areas due to diverse topographic features (e.g., collapse caldera structures, prominent central edifices, large landslide scars).

Simple stochastic cellular automaton model for starved beds and implications about formation of sand topographic features in terms of sand flux

NASA Astrophysics Data System (ADS)

Endo, Noritaka

2016-12-01

A simple stochastic cellular automaton model is proposed for simulating bedload transport, especially for cases with a low transport rate and where available sediments are very sparse on substrates in a subaqueous system. Numerical simulations show that the bed type changes from sheet flow through sand patches to ripples as the amount of sand increases; this is consistent with observations in flume experiments and in the field. Without changes in external conditions, the sand flux calculated for a given amount of sand decreases over time as bedforms develop from a flat bed. This appears to be inconsistent with the general understanding that sand flux remains unchanged under the constant-fluid condition, but it is consistent with the previous experimental data. For areas of low sand abundance, the sand flux versus sand amount (flux-density relation) in the simulation shows a single peak with an abrupt decrease, followed by a long tail; this is very similar to the flux-density relation seen in automobile traffic flow. This pattern (the relation between segments of the curve and the corresponding bed states) suggests that sand sheets, sand patches, and sand ripples correspond respectively to the free-flow phase, congested phase, and jam phase of traffic flows. This implies that sand topographic features on starved beds are determined by the degree of interference between sand particles. Although the present study deals with simple cases only, this can provide a simplified but effective modeling of the more complicated sediment transport processes controlled by interference due to contact between grains, such as the pulsatory migration of grain-size bimodal mixtures with repetition of clustering and scattering.

Effects of topographic features on postfire exposed mineral soil in small watersheds

Treesearch

Mariana Dobre; Joan Q. Wu; William J. Elliot; Ina S. Miller; Theresa B. Jain

2014-01-01

Exposed mineral soil is an immediate result of forest fires with direct relevance on surface runoff and soil erosion. The goal of this study was to determine which topographic features influence the distribution of exposed mineral soil following wildfire in forested watersheds. In a field investigation 2 months after a simulated wildfire, ground cover was measured and...

Augmented Affordances Support Learning: Comparing the Instructional Effects of the Augmented Reality Sandbox and Conventional Maps to Teach Topographic Map Skills

ERIC Educational Resources Information Center

Richardson, R. Thomas; Sammons, Dotty; Del-Parte, Donna

2018-01-01

This study compared learning performance during and following AR and non-AR topographic map instruction and practice Two-way ANOVA testing indicated no significant differences on a posttest assessment between map type and spatial ability. Prior learning activity results revealed a significant performance difference between AR and non-AR treatment…

Dendrochronological analysis of white oak growth patterns across a topographic moisture gradient in southern Ohio

Treesearch

Alexander K. Anning; Darrin L. Rubino; Elaine K. Sutherland; Brian C. McCarthy

2013-01-01

Moisture availability is a key factor that influences white oak (Quercus alba L.) growth and wood production. In unglaciated eastern North America, available soil moisture varies greatly along topographic and edaphic gradients. This study was aimed at determining the effects of soil moisture variability and macroclimate on white oak growth in mixed-oak forests of...

Tools and perspectives for a unified approach to understanding microbial ecology in the critical zone

NASA Astrophysics Data System (ADS)

Gallery, R. E.; Aronson, E. L.; Fairbanks, D.; Murphy, M. A.; Rich, V. I.; Hart, S. C.

2015-12-01

Microbial communities that control nutrient transformation and storage in ecosystems are themselves influenced by landscape topography and vegetative cover. Globally, disturbances such as fires and insect outbreaks are increasing in frequency and severity with enormous impacts on global carbon cycling. The resiliency of soil microbial communities to these heterogeneous disturbances determines rates of nutrient transformations as well as ecosystem structure and recovery. Natural and anthropogenic disturbances are a common thread throughout Critical Zone Observatories and ecosystems in general. Using the 2013 Thompson Ridge Fire in the Jemez River Basin CZO as a case study, we examine the effect of a wildfire disturbance regime on successional changes in soil microbiota and ecosystem fluxes across a landscape with high topographic variation. We find that, layered over the topographic controls of hotspots of biogeochemical activity, fire alters organic substrate quality, microbial biomass, community structure, and activity. For example, fire increases soil pH, which is commonly found as an explanatory variable describing bacterial community structure. Soil microbes excrete exoenzymes to decompose polymers and acquire nutrients, and these activities can indicate changing microbial function or soil quality. In these mixed conifer forests, we find shifts from carbon to nitrogen-dominated exoenzyme activities in burned forests with alkaline soils, suggesting shifts of microbial taxa and function that correspond with recovering soil microbial biomass. More generally we ask - what combination of tools and perspectives is needed to fully understand soil microbial ecology and biogeochemistry of the critical zone? Results from an NSF Science Across Virtual Institutes (SAVI) CZO Network Biogeochemistry Workshop highlight the importance of incorporating a standard suite of microbial activity and community assays along with soil biogeochemical and flux measurements to enable comparisons across the broader CZO network. These characterizations would provide regional microbial function and biodiversity data in a standardized framework that can be used to enable more effective management and valuation of critical zone services and inform projections under global change scenarios.

Biomimetic engineering of a generic cell-on-membrane architecture by microfluidic engraving for on-chip bioassays.

PubMed

Lee, Sang-Wook; Noh, Ji-Yoon; Park, Seung Chul; Chung, Jin-Ho; Lee, Byoungho; Lee, Sin-Doo

2012-05-22

We develop a biomimetic cell-on-membrane architecture in close-volume format which allows the interfacial biocompatibility and the reagent delivery capability for on-chip bioassays. The key concept lies in the microfluidic engraving of lipid membranes together with biological cells on a supported substrate with topographic patterns. The simultaneous engraving process of a different class of fluids is promoted by the front propagation of an air-water interface inside a flow-cell. This highly parallel, microfluidic cell-on-membrane approach opens a door to the natural biocompatibility in mimicking cellular stimuli-response behavior essential for diverse on-chip bioassays that can be precisely controlled in the spatial and temporal manner.

Structure and optical properties of TiO2 thin films deposited by ALD method

NASA Astrophysics Data System (ADS)

Szindler, Marek; Szindler, Magdalena M.; Boryło, Paulina; Jung, Tymoteusz

2017-12-01

This paper presents the results of study on titanium dioxide thin films prepared by atomic layer deposition method on a silicon substrate. The changes of surface morphology have been observed in topographic images performed with the atomic force microscope (AFM) and scanning electron microscope (SEM). Obtained roughness parameters have been calculated with XEI Park Systems software. Qualitative studies of chemical composition were also performed using the energy dispersive spectrometer (EDS). The structure of titanium dioxide was investigated by X-ray crystallography. A variety of crystalline TiO2 was also confirmed by using the Raman spectrometer. The optical reflection spectra have been measured with UV-Vis spectrophotometry.

Tip-enhanced Raman scattering of DNA aptamers for Listeria monocytogenes.

PubMed

He, Siyu; Li, Hongyuan; Gomes, Carmen L; Voronine, Dmitri V

2018-05-03

Optical detection and conformational mapping of aptamers are important for improving medical and biosensing technologies and for better understanding of biological processes at the molecular level. The authors investigate the vibrational signals of deoxyribonucleic acid aptamers specific to Listeria monocytogenes immobilized on gold substrates using tip-enhanced Raman scattering (TERS) spectroscopy and nanoscale imaging. The authors compare topographic and nano-optical signals and investigate the fluctuations of the position-dependent TERS spectra. They perform spatial TERS mapping with 3 nm step size and discuss the limitation of the resulting spatial resolution under the ambient conditions. TERS mapping provides information about the chemical composition and conformation of aptamers and paves the way to future label-free biosensing.

Re-evaluation of heat flow data near Parkfield, CA: Evidence for a weak San Andreas Fault

USGS Publications Warehouse

Fulton, P.M.; Saffer, D.M.; Harris, Reid N.; Bekins, B.A.

2004-01-01

Improved interpretations of the strength of the San Andreas Fault near Parkfield, CA based on thermal data require quantification of processes causing significant scatter and uncertainty in existing heat flow data. These effects include topographic refraction, heat advection by topographically-driven groundwater flow, and uncertainty in thermal conductivity. Here, we re-evaluate the heat flow data in this area by correcting for full 3-D terrain effects. We then investigate the potential role of groundwater flow in redistributing fault-generated heat, using numerical models of coupled heat and fluid flow for a wide range of hydrologic scenarios. We find that a large degree of the scatter in the data can be accounted for by 3-D terrain effects, and that for plausible groundwater flow scenarios frictional heat generated along a strong fault is unlikely to be redistributed by topographically-driven groundwater flow in a manner consistent with the 3-D corrected data. Copyright 2004 by the American Geophysical Union.

Detecting and Quantifying Topography in Neural Maps

PubMed Central

Yarrow, Stuart; Razak, Khaleel A.; Seitz, Aaron R.; Seriès, Peggy

2014-01-01

Topographic maps are an often-encountered feature in the brains of many species, yet there are no standard, objective procedures for quantifying topography. Topographic maps are typically identified and described subjectively, but in cases where the scale of the map is close to the resolution limit of the measurement technique, identifying the presence of a topographic map can be a challenging subjective task. In such cases, an objective topography detection test would be advantageous. To address these issues, we assessed seven measures (Pearson distance correlation, Spearman distance correlation, Zrehen's measure, topographic product, topological correlation, path length and wiring length) by quantifying topography in three classes of cortical map model: linear, orientation-like, and clusters. We found that all but one of these measures were effective at detecting statistically significant topography even in weakly-ordered maps, based on simulated noisy measurements of neuronal selectivity and sparse sampling of the maps. We demonstrate the practical applicability of these measures by using them to examine the arrangement of spatial cue selectivity in pallid bat A1. This analysis shows that significantly topographic arrangements of interaural intensity difference and azimuth selectivity exist at the scale of individual binaural clusters. PMID:24505279

A Watered-Down Topographic Map. Submarine Ring of Fire--Grades 6-8. Topographic and Bathymetric Maps.

ERIC Educational Resources Information Center

National Oceanic and Atmospheric Administration (DOC), Rockville, MD.

This activity is designed to teach about topographic maps and bathymetric charts. Students are expected to create a topographic map from a model landform, interpret a simple topographic map, and explain the difference between topographic and bathymetric maps. The activity provides learning objectives, a list of needed materials, key vocabulary…

Theory connecting nonlocal sediment transport, earth surface roughness, and the Sadler effect

NASA Astrophysics Data System (ADS)

Schumer, Rina; Taloni, Alessandro; Furbish, David Jon

2017-03-01

Earth surface evolution, like many natural phenomena typified by fluctuations on a wide range of scales and deterministic smoothing, results in a statistically rough surface. We present theory demonstrating that scaling exponents of topographic and stratigraphic statistics arise from long-time averaging of noisy surface evolution rather than specific landscape evolution processes. This is demonstrated through use of "elastic" Langevin equations that generically describe disturbance from a flat earth surface using a noise term that is smoothed deterministically via sediment transport. When smoothing due to transport is a local process, the geologic record self organizes such that a specific Sadler effect and topographic power spectral density (PSD) emerge. Variations in PSD slope reflect the presence or absence and character of nonlocality of sediment transport. The range of observed stratigraphic Sadler slopes captures the same smoothing feature combined with the presence of long-range spatial correlation in topographic disturbance.

The importance of topographic corrections on magnetotelluric response data from rugged regions of Anatolia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guerer, A.; Ilkisik, O.M.

1997-01-01

Topographic irregularities cause some distortions of magnetotelluric (MT) fields. In the vicinity of a topographic feature, the TM-mode distortion increases with the height and inclination of the slope. It is well-known that TM-mode topographic effects are much greater than TE-mode distortions. The authors have made a study of MT anomalies in TM-mode due to two-dimensional topography. In order to reduce these effects, the distortion tensor stripping technique was used. After corrections, the resulting data can be interpreted as if they were obtained over a flat surface and depend only on the subsurface structure. However, this technique sometimes causes some geometricalmore » distortions of the real subsurface structure. One of the aims is to overcome this failure. The authors have modified the correction coefficients by considering the actual one-dimensional geology. Model studies showed that this approach is especially useful in removing the terrain effects on complex 2D subsurface structures. The other purpose of this study is to emphasize the importance of a proper terrain correction for data from sites having mountainous topography over complex geology, e.g., strike-slip faults, suture zones and rift valleys. Some examples of MT data sets collected from the North Anatolian Fault Zone and from the thrust regions of the Western Taurides will be presented.« less

Lateral topography for reducing effective dose in low-dose chest CT.

PubMed

Bang, Dong-Ho; Lim, Daekeon; Hwang, Wi-Sub; Park, Seong-Hoon; Jeong, Ok-man; Kang, Kyung Wook; Kang, Hohyung

2013-06-01

The purposes of this study were to assess radiation exposure during low-dose chest CT by using lateral topography and to compare the lateral topographic findings with findings obtained with anteroposterior topography alone and anteroposterior and lateral topography combined. From November 2011 to February 2012, 210 male subjects were enrolled in the study. Age, weight, and height of the men were recorded. All subjects were placed into one of three subgroups based on the type of topographic image obtained: anteroposterior topography, lateral topography, and both anteroposterior and lateral topography. Imaging was performed with a 128-MDCT scanner. CT, except for topography, was the same for all subjects. A radiologist analyzed each image, recorded scan length, checked for any insufficiencies in the FOV, and calculated the effective radiation dose. One-way analysis of variance and multiple comparisons were used to compare the effective radiation exposure and scan length between groups. The mean scan length in the anteroposterior topography group was significantly greater than that of the lateral topography group and the combined anteroposterior and lateral topography group (p < 0.001). The mean effective radiation dose for the lateral topography group (0.735 ± 0.033 mSv) was significantly lower than that for the anteroposterior topography group (0.763 ± 0.038 mSv) and the combined anteroposterior and lateral topography group (0.773 ± 0.038) (p < 0.001). Lateral topographic low-dose CT was associated with a lower effective radiation dose and scan length than either anteroposterior topographic low-dose chest CT or low-dose chest CT with both anteroposterior and lateral topograms.

Topography Mediates the Influence of Cover Crops on Soil Nitrate Levels in Row Crop Agricultural Systems

PubMed Central

Ladoni, Moslem; Kravchenko, Alexandra N.; Robertson, G. Phillip

2015-01-01

Supplying adequate amounts of soil N for plant growth during the growing season and across large agricultural fields is a challenge for conservational agricultural systems with cover crops. Knowledge about cover crop effects on N comes mostly from small, flat research plots and performance of cover crops across topographically diverse agricultural land is poorly understood. Our objective was to assess effects of both leguminous (red clover) and non-leguminous (winter rye) cover crops on potentially mineralizable N (PMN) and NO3--N levels across a topographically diverse landscape. We studied conventional, low-input, and organic managements in corn-soybean-wheat rotation. The rotations of low-input and organic managements included rye and red clover cover crops. The managements were implemented in twenty large undulating fields in Southwest Michigan starting from 2006. The data collection and analysis were conducted during three growing seasons of 2011, 2012 and 2013. Observational micro-plots with and without cover crops were laid within each field on three contrasting topographical positions of depression, slope and summit. Soil samples were collected 4–5 times during each growing season and analyzed for NO3--N and PMN. The results showed that all three managements were similar in their temporal and spatial distributions of NO3 —N. Red clover cover crop increased NO3--N by 35% on depression, 20% on slope and 32% on summit positions. Rye cover crop had a significant 15% negative effect on NO3--N in topographical depressions but not in slope and summit positions. The magnitude of the cover crop effects on soil mineral nitrogen across topographically diverse fields was associated with the amount of cover crop growth and residue production. The results emphasize the potential environmental and economic benefits that can be generated by implementing site-specific topography-driven cover crop management in row-crop agricultural systems. PMID:26600462

Topography Mediates the Influence of Cover Crops on Soil Nitrate Levels in Row Crop Agricultural Systems.

PubMed

Ladoni, Moslem; Kravchenko, Alexandra N; Robertson, G Phillip

2015-01-01

Supplying adequate amounts of soil N for plant growth during the growing season and across large agricultural fields is a challenge for conservational agricultural systems with cover crops. Knowledge about cover crop effects on N comes mostly from small, flat research plots and performance of cover crops across topographically diverse agricultural land is poorly understood. Our objective was to assess effects of both leguminous (red clover) and non-leguminous (winter rye) cover crops on potentially mineralizable N (PMN) and [Formula: see text] levels across a topographically diverse landscape. We studied conventional, low-input, and organic managements in corn-soybean-wheat rotation. The rotations of low-input and organic managements included rye and red clover cover crops. The managements were implemented in twenty large undulating fields in Southwest Michigan starting from 2006. The data collection and analysis were conducted during three growing seasons of 2011, 2012 and 2013. Observational micro-plots with and without cover crops were laid within each field on three contrasting topographical positions of depression, slope and summit. Soil samples were collected 4-5 times during each growing season and analyzed for [Formula: see text] and PMN. The results showed that all three managements were similar in their temporal and spatial distributions of NO3-N. Red clover cover crop increased [Formula: see text] by 35% on depression, 20% on slope and 32% on summit positions. Rye cover crop had a significant 15% negative effect on [Formula: see text] in topographical depressions but not in slope and summit positions. The magnitude of the cover crop effects on soil mineral nitrogen across topographically diverse fields was associated with the amount of cover crop growth and residue production. The results emphasize the potential environmental and economic benefits that can be generated by implementing site-specific topography-driven cover crop management in row-crop agricultural systems.

Object-Based Classification and Change Detection of Hokkaido, Japan

NASA Astrophysics Data System (ADS)

Park, J. G.; Harada, I.; Kwak, Y.

2016-06-01

Topography and geology are factors to characterize the distribution of natural vegetation. Topographic contour is particularly influential on the living conditions of plants such as soil moisture, sunlight, and windiness. Vegetation associations having similar characteristics are present in locations having similar topographic conditions unless natural disturbances such as landslides and forest fires or artificial disturbances such as deforestation and man-made plantation bring about changes in such conditions. We developed a vegetation map of Japan using an object-based segmentation approach with topographic information (elevation, slope, slope direction) that is closely related to the distribution of vegetation. The results found that the object-based classification is more effective to produce a vegetation map than the pixel-based classification.

Natural gas pipeline leak detector based on NIR diode laser absorption spectroscopy.

PubMed

Gao, Xiaoming; Fan, Hong; Huang, Teng; Wang, Xia; Bao, Jian; Li, Xiaoyun; Huang, Wei; Zhang, Weijun

2006-09-01

The paper reports on the development of an integrated natural gas pipeline leak detector based on diode laser absorption spectroscopy. The detector transmits a 1.653 microm DFB diode laser with 10 mW and detects a fraction of the backscatter reflected from the topographic targets. To eliminate the effect of topographic scatter targets, a ratio detection technique was used. Wavelength modulation and harmonic detection were used to improve the detection sensitivity. The experimental detection limit is 50 ppmm, remote detection for a distance up to 20 m away topographic scatter target is demonstrated. Using a known simulative leak pipe, minimum detectable pipe leak flux is less than 10 ml/min.

Single-Molecule Interfacial Electron Transfer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, H. Peter

This project is focused on the use of single-molecule high spatial and temporal resolved techniques to study molecular dynamics in condensed phase and at interfaces, especially, the complex reaction dynamics associated with electron and energy transfer rate processes. The complexity and inhomogeneity of the interfacial ET dynamics often present a major challenge for a molecular level comprehension of the intrinsically complex systems, which calls for both higher spatial and temporal resolutions at ultimate single-molecule and single-particle sensitivities. Combined single-molecule spectroscopy and electrochemical atomic force microscopy approaches are unique for heterogeneous and complex interfacial electron transfer systems because the static andmore » dynamic inhomogeneities can be identified and characterized by studying one molecule at a specific nanoscale surface site at a time. The goal of our project is to integrate and apply these spectroscopic imaging and topographic scanning techniques to measure the energy flow and electron flow between molecules and substrate surfaces as a function of surface site geometry and molecular structure. We have been primarily focusing on studying interfacial electron transfer under ambient condition and electrolyte solution involving both single crystal and colloidal TiO 2 and related substrates. The resulting molecular level understanding of the fundamental interfacial electron transfer processes will be important for developing efficient light harvesting systems and broadly applicable to problems in fundamental chemistry and physics. We have made significant advancement on deciphering the underlying mechanism of the complex and inhomogeneous interfacial electron transfer dynamics in dyesensitized TiO 2 nanoparticle systems that strongly involves with and regulated by molecule-surface interactions. We have studied interfacial electron transfer on TiO 2 nanoparticle surfaces by using ultrafast single-molecule spectroscopy and electrochemical AFM metal tip scanning microscopy, focusing on understanding the interfacial electron transfer dynamics at specific nanoscale electron transfer sites with high-spatially and temporally resolved topographic-and-spectroscopic characterization at individual molecule basis, characterizing single-molecule rate processes, reaction driving force, and molecule-substrate electronic coupling. One of the most significant characteristics of our new approach is that we are able to interrogate the complex interfacial electron transfer dynamics by actively pin-point energetic manipulation of the surface interaction and electronic couplings, beyond the conventional excitation and observation.« less

Nitrogen and carbon dynamics in prairie vegetation strips across topographical gradients in mixed Central Iowa agroecosystems

Treesearch

Marlín Pérez-Suárez; Michael J. Castellano; Randall Kolka; Heidi Asbjornsen; Matthew Helmers

2014-01-01

Reductions of nitrogen (N) export from agricultural lands because of changes in specific N stocks andfluxes by incorporation of small amounts of prairie vegetation strips (PVS) are poorly understood. Theprimary objective of this study was to evaluate the effect of the presence and topographical position of PVSon soil and plant carbon (C) and N stocks relative to annual...

The characteristic and changes of the event-related potentials (ERP) and brain topographic maps before and after treatment with rTMS in subjective tinnitus patients.

PubMed

Yang, Haidi; Xiong, Hao; Yu, Rongjun; Wang, Changming; Zheng, Yiqing; Zhang, Xueyuan

2013-01-01

To compare the event-related potentials (ERPs) and brain topographic maps characteristic and change in normal controls and subjective tinnitus patients before and after repetitive transcranial magnetic stimulation (rTMS) treatment. The ERPs and brain topographic maps elicited by target stimulus were compared before and after 1-week treatment with rTMS in 20 subjective tinnitus patients and 16 healthy controls. Before rTMS, target stimulus elicited a larger N1 component than the standard stimuli (repeating sounds)in control group but not in tinnitus patients. Instead, the tinnitus group pre-treatment exhibited larger amplitude of N1 in response to standard stimuli than to deviant stimuli. Furthermore tinnitus patients had smaller mismatch negativity (MMN) and late discriminative negativity (LDN)component at Fz compared with the control group. After rTMS treatment, tinnitus patients showed increased N1 response to deviant stimuli and larger MMN and LDN compared with pre-treatment. The topographic maps for the tinnitus group before rTMS -treatment demonstrated global asymmetry between the left and right cerebral hemispheres with more negative activities in left side and more positive activities in right side. In contrast, the brain topographic maps for patients after rTMS-treatment and controls seem roughly symmetrical. The ERP amplitudes and brain topographic maps in post-treatment patient group showed no significant difference with those in controls. The characterical changes in ERP and brain topographic maps in tinnitus patients maybe related with the electrophysiological mechanism of tinnitus induction and development. It can be used as an objective biomarker for the evaluation of auditory central in subjective tinnitus patients. These findings support the notion that rTMS treatment in tinnitus patients may exert a beneficial effect.

Synthesis and photosensor study of as-grown CuZnO thin film by facile chemical bath deposition

NASA Astrophysics Data System (ADS)

Gubari, Ghamdan M. M.; Ibrahim Mohammed S., M.; Huse, Nanasaheb P.; Dive, Avinash S.; Sharma, Ramphal

2018-05-01

We have successfully deposited CuZnO thin film on a glass substrate by facile chemical bath deposition method at 85 °C for 1 hr. Structural, topographical, Optical and Electrical properties of the prepared Thin Films were investigated by XRD, Raman spectrum, AFM, UV-Visible Spectrophotometer and I-V Measurement System respectively. The X-ray diffraction (XRD) pattern confirmed the formation of the CuZnO composition when compared with standard JCPDS card (JCPDF # 75-0576 & # 36-1451). The Raman analysis shows a major peak at 458 cm-1 with E2 (High) vibrational mode. AFM images revealed uniform deposition over an entire glass substrate with 66.2 nm average roughness of the film. From the optical absorption spectrum, clear band edge around ˜407 nm was observed which results in a wide energy band gap of ˜3.04 eV. The electrical properties were measured at room temperature in the voltage range ±5 V, showed a drastic enhancement in current under light illumination with the highest photosensitivity of ˜99.9 % for 260 W.

Aligned and Electrospun Piezoelectric Polymer Fiber Assembly and Scaffold

NASA Technical Reports Server (NTRS)

Holloway, Nancy M. (Inventor); Scott-Carnell, Lisa A. (Inventor); Siochi, Emilie J. (Inventor); Leong, Kam W. (Inventor); Kulangara, Karina (Inventor)

2015-01-01

A scaffold assembly and related methods of manufacturing and/or using the scaffold for stem cell culture and tissue engineering applications are disclosed which at least partially mimic a native biological environment by providing biochemical, topographical, mechanical and electrical cues by using an electroactive material. The assembly includes at least one layer of substantially aligned, electrospun polymer fiber having an operative connection for individual voltage application. A method of cell tissue engineering and/or stem cell differentiation uses the assembly seeded with a sample of cells suspended in cell culture media, incubates and applies voltage to one or more layers, and thus produces cells and/or a tissue construct. In another aspect, the invention provides a method of manufacturing the assembly including the steps of providing a first pre-electroded substrate surface; electrospinning a first substantially aligned polymer fiber layer onto the first surface; providing a second pre-electroded substrate surface; electrospinning a second substantially aligned polymer fiber layer onto the second surface; and, retaining together the layered surfaces with a clamp and/or an adhesive compound.

Aligned and Electrospun Piezoelectric Polymer Fiber Assembly and Scaffold

NASA Technical Reports Server (NTRS)

Kulangara, Karina (Inventor); Scott Carnell, Lisa A. (Inventor); Holloway, Nancy M. (Inventor); Leong, Kam W. (Inventor); Siochi, Emilie J. (Inventor)

2017-01-01

A method of manufacturing and/or using a scaffold assembly for stem cell culture and tissue engineering applications is disclosed. The scaffold at least partially mimics a native biological environment by providing biochemical, topographical, mechanical and electrical cues by using an electroactive material. The assembly includes at least one layer of substantially aligned, electrospun polymer fiber having an operative connection for individual voltage application. A method of cell tissue engineering and/or stem cell differentiation that uses the assembly seeded with a sample of cells suspended in cell culture media, incubates and applies voltage to one or more layers, and thus produces cells and/or a tissue construct. In another aspect, the invention provides a method of manufacturing the assembly including the steps of providing a first pre-electroded substrate surface; electrospinning a first substantially aligned polymer fiber layer onto the first surface; providing a second pre-electroded substrate surface; electrospinning a second substantially aligned polymer fiber layer onto the second surface; and, retaining together the layered surfaces with a clamp and/or an adhesive compound.

Atomic structure of a metal-supported two-dimensional germania film

NASA Astrophysics Data System (ADS)

Lewandowski, Adrián Leandro; Schlexer, Philomena; Büchner, Christin; Davis, Earl M.; Burrall, Hannah; Burson, Kristen M.; Schneider, Wolf-Dieter; Heyde, Markus; Pacchioni, Gianfranco; Freund, Hans-Joachim

2018-03-01

The growth and microscopic characterization of two-dimensional germania films is presented. Germanium oxide monolayer films were grown on Ru(0001) by physical vapor deposition and subsequent annealing in oxygen. We obtain a comprehensive image of the germania film structure by combining intensity-voltage low-energy electron diffraction (I/V-LEED) and ab initio density functional theory (DFT) analysis with atomic-resolution scanning tunneling microscopy (STM) imaging. For benchmarking purposes, the bare Ru(0001) substrate and the (2 ×2 )3 O covered Ru(0001) were analyzed with I/V-LEED with respect to previous reports. STM topographic images of the germania film reveal a hexagonal network where the oxygen and germanium atom positions appear in different imaging contrasts. For quantitative LEED, the best agreement has been achieved with DFT structures where the germanium atoms are located preferentially on the top and fcc hollow sites of the Ru(0001) substrate. Moreover, in these atomically flat germania films, local site geometries, i.e., tetrahedral building blocks, ring structures, and domain boundaries, have been identified, indicating possible pathways towards two-dimensional amorphous networks.

Dielectric properties of thin C r2O3 films grown on elemental and oxide metallic substrates

NASA Astrophysics Data System (ADS)

Mahmood, Ather; Street, Michael; Echtenkamp, Will; Kwan, Chun Pui; Bird, Jonathan P.; Binek, Christian

2018-04-01

In an attempt to optimize leakage characteristics of α-C r2O3 thin films, its dielectric properties were investigated at local and macroscopic scale. The films were grown on Pd(111), Pt(111), and V2O3 (0001), supported on A l2O3 substrate. The local conductivity was measured by conductive atomic force microscopy mapping of C r2O3 surfaces, which revealed the nature of defects that formed conducting paths with the bottom Pd or Pt layer. A strong correlation was found between these electrical defects and the grain boundaries revealed in the corresponding topographic scans. In comparison, the C r2O3 film on V2O3 exhibited no leakage paths at similar tip bias value. Electrical resistance measurements through e-beam patterned top electrodes confirmed the resistivity mismatch between the films grown on different electrodes. The x-ray analysis attributes this difference to the twin free C r2O3 growth on V2O3 seeding.

Hierarchical Materials Design by Pattern Transfer Printing of Self-Assembled Binary Nanocrystal Superlattices

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paik, Taejong; Yun, Hongseok; Fleury, Blaise

We demonstrate the fabrication of hierarchical materials by controlling the structure of highly ordered binary nanocrystal superlattices (BNSLs) on multiple length scales. Combinations of magnetic, plasmonic, semiconducting, and insulating colloidal nanocrystal (NC) building blocks are self-assembled into BNSL membranes via the liquid–interfacial assembly technique. Free-standing BNSL membranes are transferred onto topographically structured poly(dimethylsiloxane) molds via the Langmuir–Schaefer technique and then deposited in patterns onto substrates via transfer printing. BNSLs with different structural motifs are successfully patterned into various meso- and microstructures such as lines, circles, and even three-dimensional grids across large-area substrates. A combination of electron microscopy and grazing incidencemore » small-angle X-ray scattering (GISAXS) measurements confirm the ordering of NC building blocks in meso- and micropatterned BNSLs. This technique demonstrates structural diversity in the design of hierarchical materials by assembling BNSLs from NC building blocks of different composition and size by patterning BNSLs into various size and shape superstructures of interest for a broad range of applications.« less

Confinement induced ordering in dewetting of ultra-thin polymer bilayers on nanopatterned substrates.

PubMed

Bhandaru, Nandini; Das, Anuja; Mukherjee, Rabibrata

2016-01-14

We report the dewetting of a thin bilayer of polystyrene (PS) and poly(methylmethacrylate) (PMMA) on a topographically patterned nonwettable substrate comprising an array of pillars, arranged in a square lattice. With a gradual increase in the concentration of the PMMA solution (Cn-PMMA), the morphology of the bottom layer changes to: (1) an aligned array of spin dewetted droplets arranged along substrate grooves at very low Cn-PMMA; (2) an interconnected network of threads surrounding each pillar at intermediate Cn-PMMA; and (3) a continuous bottom layer at higher Cn-PMMA. On the other hand the morphology of the PS top layer depends largely on the nature of the pre-existing bottom layer, in addition to Cn-PS. An ordered array of PMMA core-PS shell droplets forms right after spin coating when both Cn-PMMA and Cn-PS are very low. Bilayers with all other initial configurations evolve during thermal annealing, resulting in a variety of ordered structures. Unique morphologies realized include laterally coexisting structures of the two polymers confined within the substrate grooves due to initial rupture of the bottom layer on the substrate followed by a squeezing flow of the top layer; an array of core-shell and single polymer droplets arranged in an alternating order etc., to highlight a few. Such structures cannot be fabricated by any stand-alone lithography technique. On the other hand, in some cases the partially dewetted bottom layer imparts stability to an intact top PS layer against dewetting. Apart from ordering, under certain specific conditions significant miniaturization and downsizing of dewetted feature periodicity and dimension as compared to dewetting of a single layer on a flat substrate is observed. With the help of a morphology phase diagram we show that ordering is achieved over a wide combination of Cn-PMMA and Cn-PS, though the morphology and dewetting pathway differs significantly with variation in the thickness of the individual layers.

Topographical and geological amplification: case studies and engineering implications

USGS Publications Warehouse

Celebi, M.

1991-01-01

Topographical and geological amplification that occurred during past earthquakes are quantified using spectral ratios of recorded motions. Several cases are presented from the 1985 Chilean and Mexican earthquakes as well as the 1983 Coalinga (California) and 1987 Supersition Hills (California) earthquake. The strong motions recorded in Mexico City during the 1985 Michoacan earthquake are supplemented by ambient motions recorded within Mexico City to quantify the now well known resonating frequencies of the Mexico City lakebed. Topographical amplification in Canal Beagle (Chile), Coalinga and Superstition Hills (California) are quantified using the ratios derived from the aftershocks following the earthquakes. A special dense array was deployed to record the aftershocks in each case. The implications of both geological and topographical amplification are discussed in light of current code provisions. The observed geological amplifications has already influenced the code provisions. Suggestions are made to the effect that the codes should include further provisions to take the amplification due to topography into account. ?? 1991.

Relative Importance of Coral Cover, Habitat Complexity and Diversity in Determining the Structure of Reef Fish Communities

PubMed Central

Komyakova, Valeriya; Munday, Philip L.; Jones, Geoffrey P.

2013-01-01

The structure of coral reef habitat has a pronounced influence on the diversity, composition and abundance of reef-associated fishes. However, the particular features of the habitat that are most critical are not always known. Coral habitats can vary in many characteristics, notably live coral cover, topographic complexity and coral diversity, but the relative effects of these habitat characteristics are often not distinguished. Here, we investigate the strength of the relationships between these habitat features and local fish diversity, abundance and community structure in the lagoon of Lizard Island, Great Barrier Reef. In a spatial comparison using sixty-six 2m2 quadrats, fish species richness, total abundance and community structure were examined in relation to a wide range of habitat variables, including topographic complexity, habitat diversity, coral diversity, coral species richness, hard coral cover, branching coral cover and the cover of corymbose corals. Fish species richness and total abundance were strongly associated with coral species richness and cover, but only weakly associated with topographic complexity. Regression tree analysis showed that coral species richness accounted for most of the variation in fish species richness (63.6%), while hard coral cover explained more variation in total fish abundance (17.4%), than any other variable. In contrast, topographic complexity accounted for little spatial variation in reef fish assemblages. In degrading coral reef environments, the potential effects of loss of coral cover and topographic complexity are often emphasized, but these findings suggest that reduced coral biodiversity may ultimately have an equal, or greater, impact on reef-associated fish communities. PMID:24349455

Relative importance of coral cover, habitat complexity and diversity in determining the structure of reef fish communities.

PubMed

Komyakova, Valeriya; Munday, Philip L; Jones, Geoffrey P

2013-01-01

The structure of coral reef habitat has a pronounced influence on the diversity, composition and abundance of reef-associated fishes. However, the particular features of the habitat that are most critical are not always known. Coral habitats can vary in many characteristics, notably live coral cover, topographic complexity and coral diversity, but the relative effects of these habitat characteristics are often not distinguished. Here, we investigate the strength of the relationships between these habitat features and local fish diversity, abundance and community structure in the lagoon of Lizard Island, Great Barrier Reef. In a spatial comparison using sixty-six 2m(2) quadrats, fish species richness, total abundance and community structure were examined in relation to a wide range of habitat variables, including topographic complexity, habitat diversity, coral diversity, coral species richness, hard coral cover, branching coral cover and the cover of corymbose corals. Fish species richness and total abundance were strongly associated with coral species richness and cover, but only weakly associated with topographic complexity. Regression tree analysis showed that coral species richness accounted for most of the variation in fish species richness (63.6%), while hard coral cover explained more variation in total fish abundance (17.4%), than any other variable. In contrast, topographic complexity accounted for little spatial variation in reef fish assemblages. In degrading coral reef environments, the potential effects of loss of coral cover and topographic complexity are often emphasized, but these findings suggest that reduced coral biodiversity may ultimately have an equal, or greater, impact on reef-associated fish communities.

Near-station terrain corrections for gravity data by a surface-integral technique

USGS Publications Warehouse

Gettings, M.E.

1982-01-01

A new method of computing gravity terrain corrections by use of a digitizer and digital computer can result in substantial savings in the time and manual labor required to perform such corrections by conventional manual ring-chart techniques. The method is typically applied to estimate terrain effects for topography near the station, for example within 3 km of the station, although it has been used successfully to a radius of 15 km to estimate corrections in areas where topographic mapping is poor. Points (about 20) that define topographic maxima, minima, and changes in the slope gradient are picked on the topographic map, within the desired radius of correction about the station. Particular attention must be paid to the area immediately surrounding the station to ensure a good topographic representation. The horizontal and vertical coordinates of these points are entered into the computer, usually by means of a digitizer. The computer then fits a multiquadric surface to the input points to form an analytic representation of the surface. By means of the divergence theorem, the gravity effect of an interior closed solid can be expressed as a surface integral, and the terrain correction is calculated by numerical evaluation of the integral over the surfaces of a cylinder, The vertical sides of which are at the correction radius about the station, the flat bottom surface at the topographic minimum, and the upper surface given by the multiquadric equation. The method has been tested with favorable results against models for which an exact result is available and against manually computed field-station locations in areas of rugged topography. By increasing the number of points defining the topographic surface, any desired degree of accuracy can be obtained. The method is more objective than manual ring-chart techniques because no average compartment elevations need be estimated ?

Resolving topographic detail on Venus by modeling complex Magellan altimetry echoes

NASA Technical Reports Server (NTRS)

Lovell, Amy J.; Schloerb, F. Peter; Mcgill, George E.

1993-01-01

Magellan's altimeter is providing some of the finest resolution topography of Venus achieved to date. Nevertheless, efforts continue to improve the topographic resolution whenever possible. One effort to this end is stereoscopic imaging, which provides topography at scales similar to that of the synthetic aperture radar (SAR). However, this technique requires two SAR images of the same site to be obtained and limits the utility of this method. In this paper, we present another method to resolve topographic features at scales smaller than that of an altimeter footprint, which is more globally applicable than the stereoscopic approach. Each pulse which is transmitted by Magellan's altimeter scatters from the planet and echoes to the receiver, delayed based on the distance between the spacecraft and each surface element. As resolved in time, each element of an altimetry echo represents the sum of all points on the surface which are equidistant from the spacecraft. Thus, individual returns, as a function of time, create an echo profile which may be used to derive properties of the surface, such as the scattering law or, in this case, the topography within the footprint. The Magellan project has derived some of this information by fitting model templates to radar echo profiles. The templates are calculated based on Hagfor's Law, which assumes a smooth, gently undulating surface. In most regions these templates provide a reasonable fit to the observed echo profile; however, in some cases the surface departs from these simple assumptions and more complex profiles are observed. Specifically, we note that sub-footprint topographic relief apparently has a strong effect on the shape of the echo profile. To demonstrate the effects of sub-resolution relief on echo profiles, we have calculated the echo shapes from a wide range of simple topographic models. At this point, our topographic models have emphasized surfaces where only two dominant elevations are contained within a footprint, such as graben, ridges, crater rims, and central features in impact craters.

A Multi-Scale Integrated Approach to Representing Watershed Systems: Significance and Challenges

NASA Astrophysics Data System (ADS)

Kim, J.; Ivanov, V. Y.; Katopodes, N.

2013-12-01

A range of processes associated with supplying services and goods to human society originate at the watershed level. Predicting watershed response to forcing conditions has been of high interest to many practical societal problems, however, remains challenging due to two significant properties of the watershed systems, i.e., connectivity and non-linearity. Connectivity implies that disturbances arising at any larger scale will necessarily propagate and affect local-scale processes; their local effects consequently influence other processes, and often convey nonlinear relationships. Physically-based, process-scale modeling is needed to approach the understanding and proper assessment of non-linear effects between the watershed processes. We have developed an integrated model simulating hydrological processes, flow dynamics, erosion and sediment transport, tRIBS-OFM-HRM (Triangulated irregular network - based Real time Integrated Basin Simulator-Overland Flow Model-Hairsine and Rose Model). This coupled model offers the advantage of exploring the hydrological effects of watershed physical factors such as topography, vegetation, and soil, as well as their feedback mechanisms. Several examples investigating the effects of vegetation on flow movement, the role of soil's substrate on sediment dynamics, and the driving role of topography on morphological processes are illustrated. We show how this comprehensive modeling tool can help understand interconnections and nonlinearities of the physical system, e.g., how vegetation affects hydraulic resistance depending on slope, vegetation cover fraction, discharge, and bed roughness condition; how the soil's substrate condition impacts erosion processes with an non-unique characteristic at the scale of a zero-order catchment; and how topographic changes affect spatial variations of morphologic variables. Due to feedback and compensatory nature of mechanisms operating in different watershed compartments, our conclusion is that a key to representing watershed systems lies in an integrated, interdisciplinary approach, whereby a physically-based model is used for assessments/evaluations associated with future changes in landuse, climate, and ecosystems.

47 CFR 73.312 - Topographic data.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 47 Telecommunication 4 2012-10-01 2012-10-01 false Topographic data. 73.312 Section 73.312... Broadcast Stations § 73.312 Topographic data. (a) In the preparation of the profile graphs previously... question, the next best topographic information should be used. Topographic data may sometimes be obtained...

47 CFR 73.312 - Topographic data.

Code of Federal Regulations, 2013 CFR

2013-10-01

... 47 Telecommunication 4 2013-10-01 2013-10-01 false Topographic data. 73.312 Section 73.312... Broadcast Stations § 73.312 Topographic data. (a) In the preparation of the profile graphs previously... question, the next best topographic information should be used. Topographic data may sometimes be obtained...

47 CFR 73.312 - Topographic data.

Code of Federal Regulations, 2014 CFR

2014-10-01

... 47 Telecommunication 4 2014-10-01 2014-10-01 false Topographic data. 73.312 Section 73.312... Broadcast Stations § 73.312 Topographic data. (a) In the preparation of the profile graphs previously... question, the next best topographic information should be used. Topographic data may sometimes be obtained...

47 CFR 73.312 - Topographic data.

Code of Federal Regulations, 2011 CFR

2011-10-01

... Broadcast Stations § 73.312 Topographic data. (a) In the preparation of the profile graphs previously... 47 Telecommunication 4 2011-10-01 2011-10-01 false Topographic data. 73.312 Section 73.312... question, the next best topographic information should be used. Topographic data may sometimes be obtained...

47 CFR 73.312 - Topographic data.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 47 Telecommunication 4 2010-10-01 2010-10-01 false Topographic data. 73.312 Section 73.312... Broadcast Stations § 73.312 Topographic data. (a) In the preparation of the profile graphs previously... question, the next best topographic information should be used. Topographic data may sometimes be obtained...

The relation between degree-2160 spectral models of Earth's gravitational and topographic potential: a guide on global correlation measures and their dependency on approximation effects

NASA Astrophysics Data System (ADS)

Hirt, Christian; Rexer, Moritz; Claessens, Sten; Rummel, Reiner

2017-10-01

Comparisons between high-degree models of the Earth's topographic and gravitational potential may give insight into the quality and resolution of the source data sets, provide feedback on the modelling techniques and help to better understand the gravity field composition. Degree correlations (cross-correlation coefficients) or reduction rates (quantifying the amount of topographic signal contained in the gravitational potential) are indicators used in a number of contemporary studies. However, depending on the modelling techniques and underlying levels of approximation, the correlation at high degrees may vary significantly, as do the conclusions drawn. The present paper addresses this problem by attempting to provide a guide on global correlation measures with particular emphasis on approximation effects and variants of topographic potential modelling. We investigate and discuss the impact of different effects (e.g., truncation of series expansions of the topographic potential, mass compression, ellipsoidal versus spherical approximation, ellipsoidal harmonic coefficient versus spherical harmonic coefficient (SHC) representation) on correlation measures. Our study demonstrates that the correlation coefficients are realistic only when the model's harmonic coefficients of a given degree are largely independent of the coefficients of other degrees, permitting degree-wise evaluations. This is the case, e.g., when both models are represented in terms of SHCs and spherical approximation (i.e. spherical arrangement of field-generating masses). Alternatively, a representation in ellipsoidal harmonics can be combined with ellipsoidal approximation. The usual ellipsoidal approximation level (i.e. ellipsoidal mass arrangement) is shown to bias correlation coefficients when SHCs are used. Importantly, gravity models from the International Centre for Global Earth Models (ICGEM) are inherently based on this approximation level. A transformation is presented that enables a transformation of ICGEM geopotential models from ellipsoidal to spherical approximation. The transformation is applied to generate a spherical transform of EGM2008 (sphEGM2008) that can meaningfully be correlated degree-wise with the topographic potential. We exploit this new technique and compare a number of models of topographic potential constituents (e.g., potential implied by land topography, ocean water masses) based on the Earth2014 global relief model and a mass-layer forward modelling technique with sphEGM2008. Different to previous findings, our results show very significant short-scale correlation between Earth's gravitational potential and the potential generated by Earth's land topography (correlation +0.92, and 60% of EGM2008 signals are delivered through the forward modelling). Our tests reveal that the potential generated by Earth's oceans water masses is largely unrelated to the geopotential at short scales, suggesting that altimetry-derived gravity and/or bathymetric data sets are significantly underpowered at 5 arc-min scales. We further decompose the topographic potential into the Bouguer shell and terrain correction and show that they are responsible for about 20 and 25% of EGM2008 short-scale signals, respectively. As a general conclusion, the paper shows the importance of using compatible models in topographic/gravitational potential comparisons and recommends the use of SHCs together with spherical approximation or EHCs with ellipsoidal approximation in order to avoid biases in the correlation measures.

Historical Topographic Map Collection bookmark

USGS Publications Warehouse

Fishburn, Kristin A.; Allord, Gregory J.

2017-06-29

The U.S. Geological Survey (USGS) National Geospatial Program is scanning published USGS 1:250,000-scale and larger topographic maps printed between 1884, the inception of the topographic mapping program, and 2006. The goal of this project, which began publishing the historical scanned maps in 2011, is to provide a digital repository of USGS topographic maps, available to the public at no cost. For more than 125 years, USGS topographic maps have accurately portrayed the complex geography of the Nation. The USGS is the Nation’s largest producer of printed topographic maps, and prior to 2006, USGS topographic maps were created using traditional cartographic methods and printed using a lithographic printing process. As the USGS continues the release of a new generation of topographic maps (US Topo) in electronic form, the topographic map remains an indispensable tool for government, science, industry, land management planning, and leisure.

Emplacement of rock avalanche material across saturated sediments, Southern Alp, New Zealand

NASA Astrophysics Data System (ADS)

Dufresne, A.; Davies, T. R.; McSaveney, M. J.

2012-04-01

The spreading of material from slope failure events is not only influenced by the volume and nature of the source material and the local topography, but also by the materials encountered in the runout path. In this study, evidence of complex interactions between rock avalanche and sedimentary runout path material were investigated at the 45 x 106 m3 long-runout (L: 4.8 km) Round Top rock avalanche deposit, New Zealand. It was sourced within myolinitic schists of the active strike-slip Alpine Fault. The narrow and in-failure-direction elongate source scarp is deep-seated, indicating slope failure was triggered by strong seismic activity. The most striking morphological deposit features are longitudinal ridges aligned radially to source. Trenching and geophysical surveys show bulldozed and sheared substrate material at ridge termini and laterally displaced sedimentary strata. The substrate failed at a minimum depth of 3 m indicating a ploughing motion of the ridges into the saturated material below. Internal avalanche compression features suggest deceleration behind the bulldozed substrate obstacle. Contorted fabric in material ahead of the ridge document substrate disruption by the overriding avalanche material deposited as the next down-motion hummock. Comparison with rock avalanches of similar volume but different emplacement environments places Round Top between longer runout avalanches emplaced over e.g. playa lake sediments and those with shorter travel distances, whose runout was apparently retarded by topographic obstacles or that entrained high-friction debris. These empirical observations indicate the importance of runout path materials on tentative trends in rock avalanche emplacement dynamics and runout behaviour.

Magnetic and topographical modifications of amorphous Co-Fe thin films induced by high energy Ag7+ ion irradiation

NASA Astrophysics Data System (ADS)

Pookat, G.; Hysen, T.; Al-Harthi, S. H.; Al-Omari, I. A.; Lisha, R.; Avasthi, D. K.; Anantharaman, M. R.

2013-09-01

We have investigated the effects of swift heavy ion irradiation on thermally evaporated 44 nm thick, amorphous Co77Fe23 thin films on silicon substrates using 100 MeV Ag7+ ions fluences of 1 × 1011 ions/cm2, 1 × 1012 ions/cm2, 1 × 1013 ions/cm2, and 3 × 1013 ions/cm2. The structural modifications upon swift heavy irradiation were investigated using glancing angle X-ray diffraction. The surface morphological evolution of thin film with irradiation was studied using Atomic Force Microscopy. Power spectral density analysis was used to correlate the roughness variation with structural modifications investigated using X-ray diffraction. Magnetic measurements were carried out using vibrating sample magnetometry and the observed variation in coercivity of the irradiated films is explained on the basis of stress relaxation. Magnetic force microscopy images are subjected to analysis using the scanning probe image processor software. These results are in agreement with the results obtained using vibrating sample magnetometry. The magnetic and structural properties are correlated.

Precise computation of the direct and indirect topographic effects of Helmert's 2nd method of condensation using SRTM30 digital elevation model

NASA Astrophysics Data System (ADS)

Wang, Y.

2011-01-01

The direct topographic effect (DTE) and indirect topographic effect (ITE) of Helmert's 2nd method of condensation are computed using the digital elevation model (DEM) SRTM30 in 30 arc-seconds globally. The computations assume a constant density of the topographic masses. Closed formulas are used in the inner zone of half degree, and Nagy's formulas are used in the innermost column to treat the singularity of integrals. To speed up the computations, 1-dimensional fast Fourier transform (1D FFT) is applied in outer zone computations. The computation accuracy is limited to 0.1 mGal and 0.1cm for the direct and indirect effect, respectively. The mean value and standard deviation of the DTE are -0.8 and ±7.6 mGal over land areas. The extreme value -274.3 mGal is located at latitude -13.579° and longitude 289.496°, at the height of 1426 meter in the Andes Mountains. The ITE is negative everywhere and has its minimum of -235.9 cm at the peak of Himalayas (8685 meter). The standard deviation and mean value over land areas are ±15.6 cm and -6.4 cm, respectively. Because the Stokes kernel does not contain the zero and first degree spherical harmonics, the mean value of the ITE can't be compensated through the remove-restore procedure under the Stokes-Helmert scheme, and careful treatment of the mean value in the ITE is required.

The influence of topographic stresses on faulting, emphasizing the 2008 Wenchuan, China earthquake rupture

NASA Astrophysics Data System (ADS)

Styron, R. H.; Hetland, E. A.; Zhang, G.

2013-12-01

The weight of large mountains produces stresses in the crust that locally may be on the order of tectonic stresses (10-100 MPa). These stresses have a significant and spatially-variable deviatoric component that may be resolved as strong normal and shear stresses on range-bounding faults. In areas of high relief, the shear stress on faults can be comparable to inferred stress drops in earthquakes, and fault-normal stresses may be greater than 50 MPa, and thus may potentially influence fault rupture. Additionally, these stresses may be used to make inferences about the orientation and magnitude of tectonic stresses, for example by indicating a minimum stress needed to be overcome by tectonic stress. We are studying these effects in several tectonic environments, such as the Longmen Shan (China), the Denali fault (Alaska, USA) and the Wasatch Fault Zone (Utah, USA). We calculate the full topographic stress tensor field in the crust in a study region by convolution of topography with Green's functions approximating stresses from a point load on the surface of an elastic halfspace, using the solution proposed by Liu and Zoback [1992]. The Green's functions are constructed from Boussinesq's solutions for a vertical point load on an elastic halfspace, as well as Cerruti's solutions for a horizontal surface point load, accounting for irregular surface boundary and topographic spreading forces. The stress tensor field is then projected onto points embedded in the halfspace representing the faults, and the fault normal and shear stresses at each point are calculated. Our primary focus has been on the 2008 Wenchuan earthquake, as this event occurred at the base of one of Earth's highest and steepest topographic fronts and had a complex and well-studied coseismic slip distribution, making it an ideal case study to evaluate topographic influence on faulting. We calculate the topographic stresses on the Beichuan and Pengguan faults, and compare the results to the coseismic slip distribution, considering several published fault models. These models differ primarily in slip magnitude and planar vs. listric fault geometry at depth. Preliminary results indicate that topographic stresses are generally resistive to tectonic deformation, especially above ~10 km depth, where the faults are steep in all models. Down-dip topographic shear stresses on the fault are normal sense where the faults dip steeply, and reach 20 MPa on the fault beneath the Pengguan massif. Reverse-sense shear up to ~15 MPa is present on gently-dipping thrust flats at depth on listric fault models. Strike-slip shear stresses are sinistral on the steep, upper portions of faults but may be dextral on thrust flats. Topographic normal stress on the faults reaches ~80 MPa on thrust ramps and may be higher on flats. Coseismic slip magnitude is negatively correlated with topographic normal and down-dip shear stresses. The spatial patterns of topographic stresses and slip suggest that topographic stresses have significantly suppressed slip in certain areas: slip maxima occur in areas of locally lower topographic stresses, while areas of higher down-dip shear and normal stress show less slip than adjacent regions.

Effects of soil and topographic factors on vegetation restoration in opencast coal mine dumps located in a loess area

NASA Astrophysics Data System (ADS)

Wang, Jinman; Wang, Hongdan; Cao, Yingui; Bai, Zhongke; Qin, Qian

2016-02-01

Vegetation plays an important role in improving and restoring fragile ecological environments. In the Antaibao opencast coal mine, located in a loess area, the eco-environment has been substantially disturbed by mining activities, and the relationship between the vegetation and environmental factors is not very clear. Therefore, it is crucial to understand the effects of soil and topographic factors on vegetation restoration to improve the fragile ecosystems of damaged land. An investigation of the soil, topography and vegetation in 50 reclamation sample plots in Shanxi Pingshuo Antaibao opencast coal mine dumps was performed. Statistical analyses in this study included one-way ANOVA and significance testing using SPSS 20.0, and multivariate techniques of detrended correspondence analysis (DCA) and redundancy analysis (RDA) using CANOCO 4.5. The RDA revealed the environmental factors that affected vegetation restoration. Various vegetation and soil variables were significantly correlated. The available K and rock content were good explanatory variables, and they were positively correlated with tree volume. The effects of the soil factors on vegetation restoration were higher than those of the topographic factors.

Effects of soil and topographic factors on vegetation restoration in opencast coal mine dumps located in a loess area

PubMed Central

Wang, Jinman; Wang, Hongdan; Cao, Yingui; Bai, Zhongke; Qin, Qian

2016-01-01

Vegetation plays an important role in improving and restoring fragile ecological environments. In the Antaibao opencast coal mine, located in a loess area, the eco-environment has been substantially disturbed by mining activities, and the relationship between the vegetation and environmental factors is not very clear. Therefore, it is crucial to understand the effects of soil and topographic factors on vegetation restoration to improve the fragile ecosystems of damaged land. An investigation of the soil, topography and vegetation in 50 reclamation sample plots in Shanxi Pingshuo Antaibao opencast coal mine dumps was performed. Statistical analyses in this study included one-way ANOVA and significance testing using SPSS 20.0, and multivariate techniques of detrended correspondence analysis (DCA) and redundancy analysis (RDA) using CANOCO 4.5. The RDA revealed the environmental factors that affected vegetation restoration. Various vegetation and soil variables were significantly correlated. The available K and rock content were good explanatory variables, and they were positively correlated with tree volume. The effects of the soil factors on vegetation restoration were higher than those of the topographic factors. PMID:26916152

Effects of soil and topographic factors on vegetation restoration in opencast coal mine dumps located in a loess area.

PubMed

Wang, Jinman; Wang, Hongdan; Cao, Yingui; Bai, Zhongke; Qin, Qian

2016-02-26

Vegetation plays an important role in improving and restoring fragile ecological environments. In the Antaibao opencast coal mine, located in a loess area, the eco-environment has been substantially disturbed by mining activities, and the relationship between the vegetation and environmental factors is not very clear. Therefore, it is crucial to understand the effects of soil and topographic factors on vegetation restoration to improve the fragile ecosystems of damaged land. An investigation of the soil, topography and vegetation in 50 reclamation sample plots in Shanxi Pingshuo Antaibao opencast coal mine dumps was performed. Statistical analyses in this study included one-way ANOVA and significance testing using SPSS 20.0, and multivariate techniques of detrended correspondence analysis (DCA) and redundancy analysis (RDA) using CANOCO 4.5. The RDA revealed the environmental factors that affected vegetation restoration. Various vegetation and soil variables were significantly correlated. The available K and rock content were good explanatory variables, and they were positively correlated with tree volume. The effects of the soil factors on vegetation restoration were higher than those of the topographic factors.

3D Plasma Nanotextured® Polymeric Surfaces for Protein or Antibody Arrays, and Biomolecule and Cell Patterning.

PubMed

Tsougeni, Katerina; Ellinas, Kosmas; Koukouvinos, George; Petrou, Panagiota S; Tserepi, Angeliki; Kakabakos, Sotirios E; Gogolides, Evangelos

2018-01-01

Plasma micro-nanotexturing is a generic technology for topographical and chemical modification of surfaces and their implementation in microfluidics and microarrays. Nanotextured surfaces with desirable chemical functionality (and wetting behavior) have shown excellent biomolecule immobilization and cell adhesion. Specifically, nanotextured hydrophilic areas show (a) strong binding of biomolecules and (b) strong adhesion of cells, while nanotextured superhydrophobic areas show null adsorption of (a) proteins and (b) cells. Here we describe the protocols for (a) biomolecule adsorption control on nanotextured surfaces for microarray fabrication and (b) cell adhesion on such surfaces. 3D plasma nanotextured® substrates are commercialized through Nanoplasmas private company, a spin-off of the National Centre for Scientific Research Demokritos.

Topographic Map and Compass Use. Student Manual.

ERIC Educational Resources Information Center

Taylor, Michael

This student manual is designed to introduce students to topographic maps and compass use. The first of five units included in the manual is an introduction to topographic maps. Among the topics discussed in this unit are uses, sources, and care and maintenance of topographic maps. Unit 2 discusses topographic map symbols and colors and provides a…

Effects of phenytoin on N100 augmenting/reducing and the late positive complex of the event-related potential: a topographic analysis.

PubMed

Pritchard, W S; Barratt, E S; Faulk, D M; Brandt, M E; Bryant, S G

1986-01-01

The effects of 100 mg of phenytoin on the topographic distribution of augmenting/reducing (amplitude response/nonresponse to increases in stimulus intensity) of the visual N100 component of the event-related potential (ERP) were examined. In normal subjects, visual N100 augmenting is associated with impulsivity and attentional distraction. Effects of phenytoin on the topographic distributions of the P300 and slow-wave cognitive ERP components were also examined. Subjects counted the total number of light flashes presented at two highly discriminable but equiprobable intensities. Results indicated that phenytoin had a significant reducing effect on the intensity response of N100 at the vertex and anterior temporal electrode sites, and approached significance at the frontal pole. That is, at these loci N100 showed less of an increase in amplitude (or, in some subjects, more of a decrease) in going from baseline to drug than in going from baseline to placebo. Results also indicated that phenytoin significantly enhanced the amplitude of the frontal, negative portion of slow wave, but not the posterior, positive portion or the P300 component. These findings are consistent with behavioral evidence that phenytoin reduces impulsivity and improves concentration.

The Role of Emotional Landmarks on Topographical Memory.

PubMed

Palmiero, Massimiliano; Piccardi, Laura

2017-01-01

The investigation of the role of emotional landmarks on human navigation has been almost totally neglected in psychological research. Therefore, the extent to which positive and negative emotional landmarks affect topographical memory as compared to neutral emotional landmark was explored. Positive, negative and neutral affect-laden images were selected as landmarks from the International Affective Picture System (IAPS) Inventory. The Walking Corsi test (WalCT) was used in order to test the landmark-based topographical memory. Participants were instructed to learn and retain an eight-square path encompassing positive, negative or neutral emotional landmarks. Both egocentric and allocentric frames of references were considered. Egocentric representation encompasses the object's relation to the self and it is generated from sensory data. Allocentric representation expresses a location with respect to an external frame regardless of the self and it is the basis for long-term storage of complex layouts. In particular, three measures of egocentric and allocentric topographical memory were taken into account: (1) the ability to learn the path; (2) the ability to recall by walking the path five minutes later; (3) the ability to reproduce the path on the outline of the WalCT. Results showed that both positive and negative emotional landmarks equally enhanced the learning of the path as compared to neutral emotional landmarks. In addition, positive emotional landmarks improved the reproduction of the path on the map as compared to negative and neutral emotional landmarks. These results generally show that emotional landmarks enhance egocentric-based topographical memory, whereas positive emotional landmarks seem to be more effective for allocentric-based topographical memory.

The Role of Emotional Landmarks on Topographical Memory

PubMed Central

Palmiero, Massimiliano; Piccardi, Laura

2017-01-01

The investigation of the role of emotional landmarks on human navigation has been almost totally neglected in psychological research. Therefore, the extent to which positive and negative emotional landmarks affect topographical memory as compared to neutral emotional landmark was explored. Positive, negative and neutral affect-laden images were selected as landmarks from the International Affective Picture System (IAPS) Inventory. The Walking Corsi test (WalCT) was used in order to test the landmark-based topographical memory. Participants were instructed to learn and retain an eight-square path encompassing positive, negative or neutral emotional landmarks. Both egocentric and allocentric frames of references were considered. Egocentric representation encompasses the object’s relation to the self and it is generated from sensory data. Allocentric representation expresses a location with respect to an external frame regardless of the self and it is the basis for long-term storage of complex layouts. In particular, three measures of egocentric and allocentric topographical memory were taken into account: (1) the ability to learn the path; (2) the ability to recall by walking the path five minutes later; (3) the ability to reproduce the path on the outline of the WalCT. Results showed that both positive and negative emotional landmarks equally enhanced the learning of the path as compared to neutral emotional landmarks. In addition, positive emotional landmarks improved the reproduction of the path on the map as compared to negative and neutral emotional landmarks. These results generally show that emotional landmarks enhance egocentric-based topographical memory, whereas positive emotional landmarks seem to be more effective for allocentric-based topographical memory. PMID:28539910

Landslides triggered by an earthquake and heavy rainfalls at Aso volcano, Japan, detected by UAS and SfM-MVS photogrammetry

NASA Astrophysics Data System (ADS)

Saito, Hitoshi; Uchiyama, Shoichiro; Hayakawa, Yuichi S.; Obanawa, Hiroyuki

2018-12-01

Unmanned aerial systems (UASs) and structure-from-motion multi-view stereo (SfM-MVS) photogrammetry have attracted a tremendous amount of interest for use in the creation of high-definition topographic data for geoscientific studies. By using these techniques, this study examined the topographic characteristics of coseismic landslides triggered by the 2016 Kumamoto earthquake (Mw 7.1) in the Sensuikyo area (1.0 km2) at Aso volcano, Japan. The study area has frequently experienced rainfall-induced landslide events, such as those in 1990, 2001, and 2012. We obtained orthorectified images and digital surface models (DSMs) with a spatial resolution of 0.06 m before and after the 2016 Kumamoto earthquake. By using these high-definition images and DSMs, we detected a total of 54 coseismic landslides with volumes of 9.1-3994.6 m3. These landslides, many of which initiated near topographic ridges, were typically located on upside hillslopes of previous rainfall-induced landslide scars that formed in 2012. This result suggests that the topographic effect on seismic waves, i.e., amplification of ground acceleration, was important for coseismic landslide initiation in the study area. The average depth of the coseismic landslides was 1.5 m, which is deeper than the depth of the rainfall-induced landslides prior to these. The total sediment production of the coseismic landslides reached 2.5 × 104 m3/km2, which is of the same order as the sediment production triggered by the previous single heavy rainfall event. This result indicates that the effects of the 2016 Kumamoto earthquake in terms of sediment production and topographic changes were similar to those of the rainfall-induced landslide event in the study area.

Specification for the U.S. Geological Survey Historical Topographic Map Collection

USGS Publications Warehouse

Allord, Gregory J.; Walter, Jennifer L.; Fishburn, Kristin A.; Shea, Gale A.

2014-01-01

This document provides the detailed requirements for producing, archiving, and disseminating a comprehensive digital collection of topographic maps for the U.S. Geological Survey (USGS) Historical Topographic Map Collection (HTMC). The HTMC is a digital archive of about 190,000 printed topographic maps published by the USGS from the inception of the topographic mapping program in 1884 until the last paper topographic map using lithographic printing technology was published in 2006. The HTMC provides a comprehensive digital repository of all scales and all editions of USGS printed topographic maps that is easily discovered, browsed, and downloaded by the public at no cost. The HTMC provides ready access to maps that are no longer available for distribution in print. A digital file representing the original paper historical topographic map is produced for each historical map in the HTMC in georeferenced PDF (GeoPDF) format (a portable document format [PDF] with a geospatial extension).

Scanning and georeferencing historical USGS quadrangles

USGS Publications Warehouse

Fishburn, Kristin A.; Davis, Larry R.; Allord, Gregory J.

2017-06-23

The U.S. Geological Survey (USGS) National Geospatial Program is scanning published USGS 1:250,000-scale and larger topographic maps printed between 1884, the inception of the topographic mapping program, and 2006. The goal of this project, which began publishing the Historical Topographic Map Collection in 2011, is to provide access to a digital repository of USGS topographic maps that is available to the public at no cost. For more than 125 years, USGS topographic maps have accurately portrayed the complex geography of the Nation. The USGS is the Nation’s largest producer of traditional topographic maps, and, prior to 2006, USGS topographic maps were created using traditional cartographic methods and printed using a lithographic process. The next generation of topographic maps, US Topo, is being released by the USGS in digital form, and newer technologies make it possible to also deliver historical maps in the same electronic format that is more publicly accessible.

Effects of topography on simulated net primary productivity at landscape scale.

PubMed

Chen, X F; Chen, J M; An, S Q; Ju, W M

2007-11-01

Local topography significantly affects spatial variations of climatic variables and soil water movement in complex terrain. Therefore, the distribution and productivity of ecosystems are closely linked to topography. Using a coupled terrestrial carbon and hydrological model (BEPS-TerrainLab model), the topographic effects on the net primary productivity (NPP) are analyzed through four modelling experiments for a 5700 km(2) area in Baohe River basin, Shaanxi Province, northwest of China. The model was able to capture 81% of the variability in NPP estimated from tree rings, with a mean relative error of 3.1%. The average NPP in 2003 for the study area was 741 gCm(-2)yr(-1) from a model run including topographic effects on the distributions of climate variables and lateral flow of ground water. Topography has considerable effect on NPP, which peaks near 1350 m above the sea level. An elevation increase of 100 m above this level reduces the average annual NPP by about 25 gCm(-2). The terrain aspect gives rise to a NPP change of 5% for forests located below 1900 m as a result of its influence on incident solar radiation. For the whole study area, a simulation totally excluding topographic effects on the distributions of climatic variables and ground water movement overestimated the average NPP by 5%.

Interactive effects of agricultural management and topography on soil carbon sequestration

NASA Astrophysics Data System (ADS)

Ladoni, M.; Kravchenko, S.; Munoz, J.; Erickson, M.

2012-12-01

Proper agricultural management scenarios such as no-tillage, cover cropping, agroforestry, have demonstrated potential to increase the amount of carbon sequestered in soil and to mitigate atmospheric carbon levels. The knowledge about positive effects of cover cropping comes mostly from small uniform experimental plots, but whether these positive effects will exists in large scale fields with diverse topography and what would be the magnitude of these effects on a field scale remains to be seen. Our objective is to compare performance of different agricultural managements including those with cover crops in their influences on SOC across diverse topographical landscape in large agricultural fields. The three studied agricultural practices are Conventionally tilled and fertilized management without cover crops (T1), Low-input management with reduced chemical inputs (T3) and Organic (T4) management, the latter two have rye and red clover cover crops as part of their rotations. Within each field 1- 4 transects with three topographical positions of "depression", "slope" and "summit" were identified. The first soil sampling was done in spring 2010 and the second set of soil samples were collected from topographical positions during growing season of 2011. Samples were analyzed for total SOC and also particulate organic carbon (POC) content to show the changes in active pools of SOC. The results showed that topography has a significant influence in performance of cover crops. Agricultural managements with cover crops increased the POC in soil and the magnitude of this increase was different across space. Cover crops built the highest POC in depressions followed by summit and then slope. The conventional agricultural management increased POC in depression but decreased it on slopes. Low-input agricultural management when coupled with cover cropping has a potential to produce the highest increase in active pools of SOC across topographically diverse fields. The ratio of particulate organic carbon (POC) to total organic carbon (TOC) in each of agricultural managements (T1: conventional, T3: low-input, T4: organic), topographical position (DE: depression, SL: slope, SU: summit) and depth of soil (cm).

Complex Topographic Feature Ontology Patterns

USGS Publications Warehouse

Varanka, Dalia E.; Jerris, Thomas J.

2015-01-01

Semantic ontologies are examined as effective data models for the representation of complex topographic feature types. Complex feature types are viewed as integrated relations between basic features for a basic purpose. In the context of topographic science, such component assemblages are supported by resource systems and found on the local landscape. Ontologies are organized within six thematic modules of a domain ontology called Topography that includes within its sphere basic feature types, resource systems, and landscape types. Context is constructed not only as a spatial and temporal setting, but a setting also based on environmental processes. Types of spatial relations that exist between components include location, generative processes, and description. An example is offered in a complex feature type ‘mine.’ The identification and extraction of complex feature types are an area for future research.

Geologic map of Mars

USGS Publications Warehouse

Tanaka, Kenneth L.; Skinner, James A.; Dohm, James M.; Irwin, Rossman P.; Kolb, Eric J.; Fortezzo, Corey M.; Platz, Thomas; Michael, Gregory G.; Hare, Trent M.

2014-01-01

This global geologic map of Mars, which records the distribution of geologic units and landforms on the planet's surface through time, is based on unprecedented variety, quality, and quantity of remotely sensed data acquired since the Viking Orbiters. These data have provided morphologic, topographic, spectral, thermophysical, radar sounding, and other observations for integration, analysis, and interpretation in support of geologic mapping. In particular, the precise topographic mapping now available has enabled consistent morphologic portrayal of the surface for global mapping (whereas previously used visual-range image bases were less effective, because they combined morphologic and albedo information and, locally, atmospheric haze). Also, thermal infrared image bases used for this map tended to be less affected by atmospheric haze and thus are reliable for analysis of surface morphology and texture at even higher resolution than the topographic products.

Topographic stress and catastrophic collapse of volcanic islands

NASA Astrophysics Data System (ADS)

Moon, S.; Perron, J. T.; Martel, S. J.

2017-12-01

Flank collapse of volcanic islands can devastate coastal environments and potentially induce tsunamis. Previous studies have suggested that factors such as volcanic eruption events, gravitational spreading, the reduction of material strength due to hydrothermal alteration, steep coastal cliffs, or sea level change may contribute to slope instability and induce catastrophic collapse of volcanic flanks. In this study, we examine the potential influence of three-dimensional topographic stress perturbations on flank collapses of volcanic islands. Using a three-dimensional boundary element model, we calculate subsurface stress fields for the Canary and Hawaiian islands to compare the effects of stratovolcano and shield volcano shapes on topographic stresses. Our model accounts for gravitational stresses from the actual shapes of volcanic islands, ambient stress in the underlying plate, and the influence of pore water pressure. We quantify the potential for slope failure of volcanic flanks using a combined model of three-dimensional topographic stress and slope stability. The results of our analysis show that subsurface stress fields vary substantially depending on the shapes of volcanoes, and can influence the size and spatial distribution of flank failures.

Topographic and Bioclimatic Determinants of the Occurrence of Forest and Grassland in Tropical Montane Forest-Grassland Mosaics of the Western Ghats, India

PubMed Central

Das, Arundhati; Nagendra, Harini; Anand, Madhur; Bunyan, Milind

2015-01-01

The objective of this analysis was to identify topographic and bioclimatic factors that predict occurrence of forest and grassland patches within tropical montane forest-grassland mosaics. We further investigated whether interactions between topography and bioclimate are important in determining vegetation pattern, and assessed the role of spatial scale in determining the relative importance of specific topographic features. Finally, we assessed the role of elevation in determining the relative importance of diverse explanatory factors. The study area consists of the central and southern regions of the Western Ghats of Southern India, a global biodiversity hotspot. Random forests were used to assess prediction accuracy and predictor importance. Conditional inference classification trees were used to interpret predictor effects and examine potential interactions between predictors. GLMs were used to confirm predictor importance and assess the strength of interaction terms. Overall, topographic and bioclimatic predictors classified vegetation pattern with approximately 70% accuracy. Prediction accuracy was higher for grassland than forest, and for mosaics at higher elevations. Elevation was the most important predictor, with mosaics above 2000m dominated largely by grassland. Relative topographic position measured at a local scale (within a 300m neighbourhood) was another important predictor of vegetation pattern. In high elevation mosaics, northness and concave land surface curvature were important predictors of forest occurrence. Important bioclimatic predictors were: dry quarter precipitation, annual temperature range and the interaction between the two. The results indicate complex interactions between topography and bioclimate and among topographic variables. Elevation and topography have a strong influence on vegetation pattern in these mosaics. There were marked regional differences in the roles of various topographic and bioclimatic predictors across the range of study mosaics, indicating that the same pattern of grass and forest seems to be generated by different sets of mechanisms across the region, depending on spatial scale and elevation. PMID:26121353

Topographic and Bioclimatic Determinants of the Occurrence of Forest and Grassland in Tropical Montane Forest-Grassland Mosaics of the Western Ghats, India.

PubMed

Das, Arundhati; Nagendra, Harini; Anand, Madhur; Bunyan, Milind

2015-01-01

The objective of this analysis was to identify topographic and bioclimatic factors that predict occurrence of forest and grassland patches within tropical montane forest-grassland mosaics. We further investigated whether interactions between topography and bioclimate are important in determining vegetation pattern, and assessed the role of spatial scale in determining the relative importance of specific topographic features. Finally, we assessed the role of elevation in determining the relative importance of diverse explanatory factors. The study area consists of the central and southern regions of the Western Ghats of Southern India, a global biodiversity hotspot. Random forests were used to assess prediction accuracy and predictor importance. Conditional inference classification trees were used to interpret predictor effects and examine potential interactions between predictors. GLMs were used to confirm predictor importance and assess the strength of interaction terms. Overall, topographic and bioclimatic predictors classified vegetation pattern with approximately 70% accuracy. Prediction accuracy was higher for grassland than forest, and for mosaics at higher elevations. Elevation was the most important predictor, with mosaics above 2000 m dominated largely by grassland. Relative topographic position measured at a local scale (within a 300 m neighbourhood) was another important predictor of vegetation pattern. In high elevation mosaics, northness and concave land surface curvature were important predictors of forest occurrence. Important bioclimatic predictors were: dry quarter precipitation, annual temperature range and the interaction between the two. The results indicate complex interactions between topography and bioclimate and among topographic variables. Elevation and topography have a strong influence on vegetation pattern in these mosaics. There were marked regional differences in the roles of various topographic and bioclimatic predictors across the range of study mosaics, indicating that the same pattern of grass and forest seems to be generated by different sets of mechanisms across the region, depending on spatial scale and elevation.

Standard for the U.S. Geological Survey Historical Topographic Map Collection

USGS Publications Warehouse

Allord, Gregory J.; Fishburn, Kristin A.; Walter, Jennifer L.

2014-01-01

This document defines the digital map product of the U.S. Geological Survey (USGS) Historical Topographic Map Collection (HTMC). The HTMC is a digital archive of about 190,000 printed topographic quadrangle maps published by the USGS from the inception of the topographic mapping program in 1884 until the last paper topographic map using lithographic printing technology was published in 2006. The HTMC provides a comprehensive digital repository of all scales and all editions of USGS printed topographic maps that is easily discovered, browsed, and downloaded by the public at no cost. Each printed topographic map is scanned “as is” and captures the content and condition of each map. The HTMC provides ready access to maps that are no longer available for distribution in print. A new generation of topographic maps called “US Topo” was defined in 2009. US Topo maps, though modeled on the legacy 7.5-minute topographic maps, conform to different standards. For more information on the HTMC, see the project Web site at: http://nationalmap.gov/historical/.

Eddy Effects in the General Circulation, Spanning Mean Currents, Mesoscale Eddies, and Topographic Generation, Including Submesoscale Nests

DTIC Science & Technology

2013-09-30

bottom form stress (pressure force) and bottom boundary layers – all the aspects associated with turbulent flows over steep topography in the presence of...filaments, and eddies; topographic current separation, form stress , and submesoscale vortex generation; Our work on isoneutral diffusion for tracers...Bump region, are due to the contribution of the bottom stress curl. Fig. 4 shows how the Gulf Stream path is directly linked to the Bottom Pressure

The Effect of DEM Source and Grid Size on the Index of Connectivity in Savanna Catchments

NASA Astrophysics Data System (ADS)

Jarihani, Ben; Sidle, Roy; Bartley, Rebecca; Roth, Christian

2017-04-01

The term "hydrological connectivity" is increasingly used instead of sediment delivery ratio to describe the linkage between the sources of water and sediment within a catchment to the catchment outlet. Sediment delivery ratio is an empirical parameter that is highly site-specific and tends to lump all processes, whilst hydrological connectivity focuses on the spatially-explicit hydrologic drivers of surficial processes. Detailed topographic information plays a fundamental role in geomorphological interpretations as well as quantitative modelling of sediment fluxes and connectivity. Geomorphometric analysis permits a detailed characterization of drainage area and drainage pattern together with the possibility of characterizing surface roughness. High resolution topographic data (i.e., LiDAR) are not available for all areas; however, remotely sensed topographic data from multiple sources with different grid sizes are used to undertake geomorphologic analysis in data-sparse regions. The Index of Connectivity (IC), a geomorphometric model based only on DEM data, is applied in two small savanna catchments in Queensland, Australia. The influence of the scale of the topographic data is explored by using DEMs from LiDAR ( 1 m), WorldDEM ( 10 m), raw SRTM and hydrologically corrected SRTM derived data ( 30 m) to calculate the index of connectivity. The effect of the grid size is also investigated by resampling the high resolution LiDAR DEM to multiple grid sizes (e.g. 5, 10, 20 m) and comparing the extracted IC.

Description of the topographical changes associated to the different stages of the DsbA catalytic cycle

PubMed Central

Vinci, Floriana; Couprie, Joël; Pucci, Piero; Quéméneur, Eric; Moutiez, Mireille

2002-01-01

This paper provides a description of the surface topography of DsbA, the bacterial disulfide-bond forming enzyme, in the different phases of its catalytic cycle. Three representative states, that is, oxidized and reduced protein and a covalent complex mimicking the DsbA-substrate disulfide intermediate, have been investigated by a combination of limited proteolysis experiments and mass spectrometry methodologies. Protease-accessible sites are largely distributed in the oxidized form with a small predominance inside the thioredoxin domain. Proteolysis occurs even in secondary structure elements, revealing a significant mobility of the protein. Many cleavage sites disappear in the reduced form and most of the remaining ones appear with strongly reduced kinetics. The protein within the complex shows an intermediate behavior. This variation of flexibility in DsbA is probably the determining factor for the course of its catalytic cycle. In particular, the great mobility of the oxidized protein might facilitate the accommodation of its various substrates, whereas the increasing rigidity from the complexed to the reduced form could help the release of oxidized products. The formation of the complex between PID peptide and DsbA does not significantly protect the enzyme against proteolysis, reinforcing the results previously obtained by calorimetry concerning the weakness of their interaction. The few cleavage sites observed, however, are in favor of the presence of the peptide in the binding site postulated from crystallographic studies. As for the peptide itself, the proteolytic pattern and the protection effect exerted by DsbA could be explained by a preferential orientation within the binding site. PMID:12070313

Topographic Science

USGS Publications Warehouse

Poppenga, Sandra K.; Evans, Gayla; Gesch, Dean; Stoker, Jason M.; Queija, Vivian R.; Worstell, Bruce; Tyler, Dean J.; Danielson, Jeff; Bliss, Norman; Greenlee, Susan

2010-01-01

The mission of U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center Topographic Science is to establish partnerships and conduct research and applications that facilitate the development and use of integrated national and global topographic datasets. Topographic Science includes a wide range of research and applications that result in improved seamless topographic datasets, advanced elevation technology, data integration and terrain visualization, new and improved elevation derivatives, and development of Web-based tools. In cooperation with our partners, Topographic Science is developing integrated-science applications for mapping, national natural resource initiatives, hazards, and global change science. http://topotools.cr.usgs.gov/.

Integrating bathymetric and topographic data

NASA Astrophysics Data System (ADS)

Teh, Su Yean; Koh, Hock Lye; Lim, Yong Hui; Tan, Wai Kiat

2017-11-01

The quality of bathymetric and topographic resolution significantly affect the accuracy of tsunami run-up and inundation simulation. However, high resolution gridded bathymetric and topographic data sets for Malaysia are not freely available online. It is desirable to have seamless integration of high resolution bathymetric and topographic data. The bathymetric data available from the National Hydrographic Centre (NHC) of the Royal Malaysian Navy are in scattered form; while the topographic data from the Department of Survey and Mapping Malaysia (JUPEM) are given in regularly spaced grid systems. Hence, interpolation is required to integrate the bathymetric and topographic data into regularly-spaced grid systems for tsunami simulation. The objective of this research is to analyze the most suitable interpolation methods for integrating bathymetric and topographic data with minimal errors. We analyze four commonly used interpolation methods for generating gridded topographic and bathymetric surfaces, namely (i) Kriging, (ii) Multiquadric (MQ), (iii) Thin Plate Spline (TPS) and (iv) Inverse Distance to Power (IDP). Based upon the bathymetric and topographic data for the southern part of Penang Island, our study concluded, via qualitative visual comparison and Root Mean Square Error (RMSE) assessment, that the Kriging interpolation method produces an interpolated bathymetric and topographic surface that best approximate the admiralty nautical chart of south Penang Island.

ToF-SIMS measurements with topographic information in combined images.

PubMed

Koch, Sabrina; Ziegler, Georg; Hutter, Herbert

2013-09-01

In 2D and 3D time-of-flight secondary ion mass spectrometric (ToF-SIMS) analysis, accentuated structures on the sample surface induce distorted element distributions in the measurement. The origin of this effect is the 45° incidence angle of the analysis beam, recording planar images with distortion of the sample surface. For the generation of correct element distributions, these artifacts associated with the sample surface need to be eliminated by measuring the sample surface topography and applying suitable algorithms. For this purpose, the next generation of ToF-SIMS instruments will feature a scanning probe microscope directly implemented in the sample chamber which allows the performance of topography measurements in situ. This work presents the combination of 2D and 3D ToF-SIMS analysis with topographic measurements by ex situ techniques such as atomic force microscopy (AFM), confocal microscopy (CM), and digital holographic microscopy (DHM). The concept of the combination of topographic and ToF-SIMS measurements in a single representation was applied to organic and inorganic samples featuring surface structures in the nanometer and micrometer ranges. The correct representation of planar and distorted ToF-SIMS images was achieved by the combination of topographic data with images of 2D as well as 3D ToF-SIMS measurements, using either AFM, CM, or DHM for the recording of topographic data.

Habitat heterogeneity of hadal trenches: Considerations and implications for future studies

NASA Astrophysics Data System (ADS)

Stewart, Heather A.; Jamieson, Alan J.

2018-02-01

The hadal zone largely comprises a series of subduction trenches that do not form part of the continental shelf-slope rise to abyssal plain continuum. Instead they form geographically isolated clusters of deep-sea (6000-11,000 m water depth) environments. There is a growing realization in hadal science that ecological patterns and processes are not driven solely by responses to hydrostatic pressure, with comparable levels of habitat heterogeneity as observed in other marine biozones. Furthermore, this heterogeneity can be expressed at multiple scales from inter-trench levels (degrees of geographical isolation, and biochemical province), to intra-trench levels (variation between trench flanks and axis), topographical features within the trench interior (sedimentary basins, ridges, escarpments, 'deeps', seamounts) to the substrate of the trench floor (seabed-sediment composition, mass movement deposits, bedrock outcrop). Using best available bathymetry data combined with the largest lander-derived imaging dataset that spans the full depth range of three hadal trenches (including adjacent slopes); the Mariana, Kermadec and New Hebrides trenches, the topographic variability, fine-scale habitat heterogeneity and distribution of seabed sediments of these three trenches have been assessed for the first time. As well as serving as the first descriptive study of habitat heterogeneity at hadal depths, this study also provides guidance for future hadal sampling campaigns taking into account geographic isolation, total trench particulate organic matter flux, maximum water depth and area.

Analysis of laser radar measurements of the asteroid 433 Eros

NASA Astrophysics Data System (ADS)

Cole, Timothy D.; Zuber, Maria T.; Neuman, Greg; Cheng, Andrew F.; Reiter, R. Alan; Guo, Yanping; Smith, David E.

2001-09-01

After a 5-year mission, a 4-year transit followed by a one-year mission orbiting the asteroid 433 Eros, the Near-Earth Asteroid Rendezvous-Shoemaker (NEAR) spacecraft made a controlled landing onto the asteroid's surface on 12 February 2001. Onboard the spacecraft, the NEAR Laser Rangefinder (NLR) facility instrument had gathered over 11 million measurements, providing a spatially dense, high-resolution, topographical map of Eros. This topographic data, combined with Doppler tracking data for the spacecraft, enabled the determination of the asteroid's shape, mass, and density thereby contributing to understanding the internal structure and collisional evolution of Eros. NLR data indicate that Eros is a consolidated body with a complex shape dominated by collisions. The offset between the asteroid's center of mass and center of figure indicates a small deviation from a homogeneous internal structure that is most simply explained by variations in mechanical structure. Regional-scale relief and slope distributions show evidence for control of some topography by a competent substrate. It was found that pulse dilation was the major source of uncertainty in single-shot range measurements from the NLR, and that this uncertainty remains consistent with the overall 6-m range measurement system accuracy for NEAR. Analysis of NLR data fully quantified the geodynamic nature of this planetesimal, ergo, illustrating the utility of laser altimetry for remote sensing.

Guidance of dorsal root ganglion neurites and Schwann cells by isolated Schwann cell topography on poly(dimethyl siloxane) conduits and films

NASA Astrophysics Data System (ADS)

Richardson, J. A.; Rementer, C. W.; Bruder, Jan M.; Hoffman-Kim, D.

2011-08-01

Biomimetic replicas of cellular topography have been utilized to direct neurite outgrowth. Here, we cultured postnatal rat dorsal root ganglion (DRG) explants in the presence of Schwann cell (SC) topography to determine the influence of SC topography on neurite outgrowth. Four distinct poly(dimethyl siloxane) conduits were fabricated within which DRG explants were cultured. To determine the contribution of SC topographical features to neurite guidance, the extent of neurite outgrowth into unpatterned conduits, conduits with randomly oriented SC replicas, and conduits with SC replicas parallel or perpendicular to the conduit long axis was measured. Neurite directionality and outgrowth from DRG were also quantified on two-dimensional SC replicas with orientations corresponding to the four conduit conditions. Additionally, live SC migration and neurite extension from DRG on SC replicas were examined as a first step toward quantification of the interactions between live SC and navigating neurites on SC replicas. DRG neurite outgrowth and morphology within conduits and on two-dimensional SC replicas were directed by the underlying SC topographical features. Maximal neurite outgrowth and alignment to the underlying features were observed into parallel conduits and on parallel two-dimensional substrates, whereas the least extent of outgrowth was observed into perpendicular conduits and on perpendicular two-dimensional replica conditions. Additionally, neurites on perpendicular conditions turned to extend along the direction of underlying SC topography. Neurite outgrowth exceeded SC migration in the direction of the underlying anisotropic SC replica after two days in culture. This finding confirms the critical role that SC have in guiding neurite outgrowth and suggests that the mechanism of neurite alignment to SC replicas depends on direct contact with cellular topography. These results suggest that SC topographical replicas may be used to direct and optimize neurite alignment, and emphasize the importance of SC features in neurite guidance.

The effect of topography of upper-mantle discontinuities on SS precursors

NASA Astrophysics Data System (ADS)

Koroni, Maria; Trampert, Jeannot

2016-01-01

Using the spectral-element method, we explored the effect of topography of upper-mantle discontinuities on the traveltimes of SS precursors recorded on transverse component seismograms. The latter are routinely used to infer the topography of mantle transition zone discontinuities. The step from precursory traveltimes to topographic changes is mainly done using linearised ray theory, or sometimes using finite-frequency kernels. We simulated exact seismograms in 1-D and 3-D elastic models of the mantle. In a second simulation, we added topography to the discontinuities. We compared the waveforms obtained with and without topography by cross correlation of the SS precursors. Since we did not add noise, the precursors are visible in individual seismograms without the need of stacking. The resulting time anomalies were then converted into topographic variations and compared to the original topographic models. Based on the correlation between initial and inferred models, and provided that ray coverage is good, we found that linearised ray theory gives a relatively good idea on the location of the uplifts and depressions of the discontinuities. It seriously underestimates the amplitude of the topographic variations by a factor ranging between 2 and 7. Real data depend on the 3-D elastic structure and the topography. All studies to date correct for the 3-D elastic effects assuming that the traveltimes can be linearly decomposed into a structure and a discontinuity part. We found a strong non-linearity in this decomposition which cannot be modelled without a fully non-linear inversion for elastic structure and discontinuities simultaneously.

Slope topography-induced spatial variation correlation with observed building damages in Corso during the May 21, 2003, M w 6.8, Boumerdes earthquake (Algeria)

NASA Astrophysics Data System (ADS)

Messaoudi, Akila; Laouami, Nasser; Mezouar, Nourredine

2017-07-01

During the May 21, 2003 M w 6.8 Boumerdes earthquake, in the "Cité des 102 Logements" built on a hilltop, in Corso, heavy damages were observed: near the crest, a four-story RC building collapsed while others experienced severe structural damage and far from the crest, slight damage was observed. In the present paper, we perform a 2D slope topography seismic analysis and investigate its effects on the response at the plateau as well as the correlation with the observed damage distribution. A site-specific seismic scenario is used involving seismological, geological, and geotechnical data. 2D finite element numerical seismic study of the idealized Corso site subjected to vertical SV wave propagation is carried out by the universal code FLUSH. The results highlighted the main factors that explain the causes of block collapse, located 8-26 m far from the crest. These are as follows: (i) a significant spatial variation of ground response along the plateau due to the topographic effect, (ii) this spatial variation presents high loss of coherence, (iii) the seismic ground responses (PGA and response spectra) reach their maxima, and (iv) the fundamental frequency of the collapsed blocks coincides with the frequency content of the topographic component. For distances far from the crest where slight damages were observed, the topographic contribution is found negligible. On the basis of these results, it is important to take into account the topographic effect and the induced spatial variability in the seismic design of structures sited near the crest of slope.

Large-scale runoff generation - parsimonious parameterisation using high-resolution topography

NASA Astrophysics Data System (ADS)

Gong, L.; Halldin, S.; Xu, C.-Y.

2011-08-01

World water resources have primarily been analysed by global-scale hydrological models in the last decades. Runoff generation in many of these models are based on process formulations developed at catchments scales. The division between slow runoff (baseflow) and fast runoff is primarily governed by slope and spatial distribution of effective water storage capacity, both acting at very small scales. Many hydrological models, e.g. VIC, account for the spatial storage variability in terms of statistical distributions; such models are generally proven to perform well. The statistical approaches, however, use the same runoff-generation parameters everywhere in a basin. The TOPMODEL concept, on the other hand, links the effective maximum storage capacity with real-world topography. Recent availability of global high-quality, high-resolution topographic data makes TOPMODEL attractive as a basis for a physically-based runoff-generation algorithm at large scales, even if its assumptions are not valid in flat terrain or for deep groundwater systems. We present a new runoff-generation algorithm for large-scale hydrology based on TOPMODEL concepts intended to overcome these problems. The TRG (topography-derived runoff generation) algorithm relaxes the TOPMODEL equilibrium assumption so baseflow generation is not tied to topography. TRG only uses the topographic index to distribute average storage to each topographic index class. The maximum storage capacity is proportional to the range of topographic index and is scaled by one parameter. The distribution of storage capacity within large-scale grid cells is obtained numerically through topographic analysis. The new topography-derived distribution function is then inserted into a runoff-generation framework similar VIC's. Different basin parts are parameterised by different storage capacities, and different shapes of the storage-distribution curves depend on their topographic characteristics. The TRG algorithm is driven by the HydroSHEDS dataset with a resolution of 3" (around 90 m at the equator). The TRG algorithm was validated against the VIC algorithm in a common model framework in 3 river basins in different climates. The TRG algorithm performed equally well or marginally better than the VIC algorithm with one less parameter to be calibrated. The TRG algorithm also lacked equifinality problems and offered a realistic spatial pattern for runoff generation and evaporation.

Large-scale runoff generation - parsimonious parameterisation using high-resolution topography

NASA Astrophysics Data System (ADS)

Gong, L.; Halldin, S.; Xu, C.-Y.

2010-09-01

World water resources have primarily been analysed by global-scale hydrological models in the last decades. Runoff generation in many of these models are based on process formulations developed at catchments scales. The division between slow runoff (baseflow) and fast runoff is primarily governed by slope and spatial distribution of effective water storage capacity, both acting a very small scales. Many hydrological models, e.g. VIC, account for the spatial storage variability in terms of statistical distributions; such models are generally proven to perform well. The statistical approaches, however, use the same runoff-generation parameters everywhere in a basin. The TOPMODEL concept, on the other hand, links the effective maximum storage capacity with real-world topography. Recent availability of global high-quality, high-resolution topographic data makes TOPMODEL attractive as a basis for a physically-based runoff-generation algorithm at large scales, even if its assumptions are not valid in flat terrain or for deep groundwater systems. We present a new runoff-generation algorithm for large-scale hydrology based on TOPMODEL concepts intended to overcome these problems. The TRG (topography-derived runoff generation) algorithm relaxes the TOPMODEL equilibrium assumption so baseflow generation is not tied to topography. TGR only uses the topographic index to distribute average storage to each topographic index class. The maximum storage capacity is proportional to the range of topographic index and is scaled by one parameter. The distribution of storage capacity within large-scale grid cells is obtained numerically through topographic analysis. The new topography-derived distribution function is then inserted into a runoff-generation framework similar VIC's. Different basin parts are parameterised by different storage capacities, and different shapes of the storage-distribution curves depend on their topographic characteristics. The TRG algorithm is driven by the HydroSHEDS dataset with a resolution of 3'' (around 90 m at the equator). The TRG algorithm was validated against the VIC algorithm in a common model framework in 3 river basins in different climates. The TRG algorithm performed equally well or marginally better than the VIC algorithm with one less parameter to be calibrated. The TRG algorithm also lacked equifinality problems and offered a realistic spatial pattern for runoff generation and evaporation.

Evaluating topographic effects on ground deformation: Insights from finite element modeling

NASA Astrophysics Data System (ADS)

Ronchin, Erika; Geyer, Adelina; Marti, Joan

2015-04-01

Ground deformation has been demonstrated to be one of the most common signals of volcanic unrest. Although volcanoes are commonly associated with significant topographic relief, most analytical models assumed the Earth's surface as flat. In the last years, it has been confirmed that this approximation can lead to important misinterpretations of the recorded surface deformation data. Here we perform a systematic and quantitative analysis of how topography may influence ground deformation signals and how these variations correlate with the different topographic parameters characterizing the terrain form (e.g. slope, aspect, curvature, etc.). For this, we bring together the results exposed in previous published papers and complement them with new axisymmetric and 3D Finite Elements (FE) models results. First, we study, in a parametric way, the influence of a volcanic edifice centered above the pressure source axis. Second, we carry out new 3D FE models simulating the real topography of three different volcanic areas representative of topographic scenarios common in volcanic regions: Rabaul caldera (Papua New Guinea) and the volcanic islands of Tenerife and El Hierro (Canary Islands). The calculated differences are then correlated with a series of topographic parameters. The final aim is to investigate the artifacts that might arise from the use of half-space models at volcanic areas considering their diverse topographic features (e.g. collapse caldera structures, prominent central edifices, large landslide scars, etc.). Final conclusions may be also useful for the design of an optimal geodetic monitoring network. This research was partially funded by the European Commission (FP7 Theme: ENV.2011.1.3.3-1; Grant 282759: "VUELCO")and RYC-2012-11024.

A fast topographic characterization of seismic station locations in Iran through integrated use of digital elevation models and GIS

NASA Astrophysics Data System (ADS)

Karimzadeh, Sadra; Miyajima, Masakatsu; Kamel, Batoul; Pessina, Vera

2015-10-01

We present topographic slope positions of seismic stations within four independent networks (IGUT, IIEES, GSI, and BHRC) in Iran through integrated use of digital elevation models and GIS. Since topographic amplification factor (TAF) due to ground surface irregularity could be one of the reasons of earthquake wave amplification and unexpected damage of structures located on the top of ridges in many previous studies, the ridge stations in the study area are recognized using topographic position index (TPI) as a spatial-based scale-dependent approach that helps in classification of topographic positions. We also present the correlation between local topographic positions and V {/s 30} along with Voronoi tiles of two networks (IGUT and IIEES). The obtained results can be profitably used in seismology to establish homogeneous subnetworks based on Voronoi tiles with precise feedback and in the formulation of new ground motion prediction equations with respect to topographic position and topographic amplification factor.

Modification of the electronic properties of hexagonal boron-nitride in BN/graphene vertical heterostructures

DOE PAGES

Pan, Minghu; Liang, Liangbo; Lin, Wenzhi; ...

2016-09-28

Van der Waals (vdW) heterostructures consist of isolated atomic planar structures, assembled layer- by-layer into desired structures in a well-defined sequence. Graphene deposited on hexagonal boron nitride (h-BN) has been first considered as a testbed system for vdW heterostructures, and many others have been demonstrated both theoretically and experimentally, revealing many attractive properties and phenomena. However, much less emphasis has been placed on how graphene actively affects h-BN properties. Here, we perform local probe measurements on single-layer h-BN grown over graphene and highlight the manifestation of a proximity effect that significantly affects the electronic properties of h-BN due to itsmore » coupling with the underlying graphene. We find electronic states originating from the graphene layer and the Cu substrate to be injected into the wide electronic gap of the h-BN top layer. Such proximity effect is further confirmed in a study of the variation of h-BN in-gap states with interlayer couplings, elucidated using a combination of topographical/ spectroscopic measurements and first-principles density functional theory calculations. In conclusion, the findings of this work indicate the potential of mutually engineering electronic properties of the components of vdW heterostructures.« less

Identifying the educative and suppressive effects of positive practice and restitutional overcorrection.

PubMed Central

Carey, R G; Bucher, B

1981-01-01

Two major features of the overcorrection procedure, restitution and positive practice, were analyzed for their educative and suppressive properties in the treatment of profoundly retarded adults. Positive practice techniques that were topographically similar and dissimilar to the target behavior were studied. Eating behavior and puzzle performance were observed. Restitutional overcorrection and both forms of positive practice were effective for suppressing inappropriate behaviors. Even when appropriate behaviors had been acquired by positive practice, restitution and dissimilar positive practice were generally ineffective for increasing their rate of occurrence. However, topographically similar positive practice was successful as a means of teaching new appropriate behaviors. PMID:7216933

Identifying the educative and suppressive effects of positive practice and restitutional overcorrection.

PubMed

Carey, R G; Bucher, B

1981-01-01

Two major features of the overcorrection procedure, restitution and positive practice, were analyzed for their educative and suppressive properties in the treatment of profoundly retarded adults. Positive practice techniques that were topographically similar and dissimilar to the target behavior were studied. Eating behavior and puzzle performance were observed. Restitutional overcorrection and both forms of positive practice were effective for suppressing inappropriate behaviors. Even when appropriate behaviors had been acquired by positive practice, restitution and dissimilar positive practice were generally ineffective for increasing their rate of occurrence. However, topographically similar positive practice was successful as a means of teaching new appropriate behaviors.

Intraspecific variation in an Ediacaran skeletal metazoan: Namacalathus from the Nama Group, Namibia.

PubMed

Penny, A M; Wood, R A; Zhuravlev, A Yu; Curtis, A; Bowyer, F; Tostevin, R

2017-01-01

Namacalathus hermanastes is one of the oldest known skeletal metazoans, found in carbonate settings of the terminal Ediacaran (~550-541 million years ago [Ma]). The palaeoecology of this widespread, goblet-shaped, benthic organism is poorly constrained yet critical for understanding the dynamics of the earliest metazoan communities. Analysis of in situ assemblages from the Nama Group, Namibia (~548-541 Ma), shows that Namacalathus exhibited size variation in response to differing water depths, hydrodynamic conditions and substrate types. In low-energy, inner ramp environments, Namacalathus attains the largest average sizes but grew in transient, loosely aggregating, monospecific aggregations attached to microbial mats. In high-energy mid-ramp reefs, Namacalathus spatially segregated into different palaeoecological habitats with distinct size distributions. In outer ramp environments, individuals were small and formed patchy, dense, monospecific aggregations attached to thin microbial mats. Asexual budding is common in all settings. We infer that variations in size distribution in Namacalathus reflect differences in habitat heterogeneity and stability, including the longevity of mechanically stable substrates and oxic conditions. In the Nama Group, long-lived skeletal metazoan communities developed within topographically heterogeneous mid-ramp reefs, which provided diverse mechanically stable microbial substrates in persistently oxic waters, while inner and outer ramp communities were often ephemeral, developing during fleeting episodes of either oxia and/or substrate stability. We conclude that Namacalathus, which forms a component of these communities in the Nama Group, was a generalist that adapted to various palaeoecological habitats within a heterogeneous ecosystem landscape where favourable conditions persisted, and was also able to opportunistically colonise transiently hospitable environments. These early skeletal metazoans colonised previously unoccupied substrates in thrombolitic reefs and other microbial carbonate settings, and while they experienced relatively low levels of interspecific competition, they were nonetheless adapted to the diverse environments and highly dynamic redox conditions present in the terminal Ediacaran. © 2016 John Wiley & Sons Ltd.

Multilayer graphene growth on polar dielectric substrates using chemical vapour deposition

NASA Astrophysics Data System (ADS)

Karamat, S.; Çelik, K.; Shah Zaman, S.; Oral, A.

2018-06-01

High quality of graphene is necessary for its applications at industrial scale production. The most convenient way is its direct growth on dielectrics which avoid the transfer route of graphene from metal to dielectric substrate usually followed by graphene community. The choice of a suitable dielectric for the gate material which can replace silicon dioxide (SiO2) is in high demand. Various properties like permittivity, thermodynamic stability, film morphology, interface quality, bandgap and band alignment of other dielectrics with graphene needs more exploration. A potential dielectric material is required which could be used to grow graphene with all these qualities. Direct growth of graphene on magnesium oxide (MgO) substrates is an interesting idea and will be a new addition in the library of 2D materials. The present work is about the direct growth of graphene on MgO substrates by an ambient pressure chemical vapour deposition (CVD) method. We address the surface instability issue of the polar oxides which is the most challenging factor in MgO. Atomic force microscopy (AFM) measurements showed the topographical features of the graphene coated on MgO. X-ray photoelectron spectroscopy (XPS) study is carried out to extract information regarding the presence of necessary elements, their bonding with substrates and to confirm the sp-2 hybridization of carbon, which is a characteristic feature of graphene film. The chemical shift is due to the surface reconstruction of MgO in the prepared samples. For graphene-MgO interface, valence band offset (VBO) and conduction band offset (CBO) extracted from valence band spectra reported. Further, we predicted the energy band diagram for single layer and thin film of graphene. By using the room-temperature energy band gap values of MgO and graphene, the CBO is calculated to be 6.85 eV for single layer and 5.66 eV for few layer (1-3) of graphene layers.

Protein-releasing conductive anodized alumina membranes for nerve-interface materials.

PubMed

Altuntas, Sevde; Buyukserin, Fatih; Haider, Ali; Altinok, Buket; Biyikli, Necmi; Aslim, Belma

2016-10-01

Nanoporous anodized alumina membranes (AAMs) have numerous biomedical applications spanning from biosensors to controlled drug delivery and implant coatings. Although the use of AAM as an alternative bone implant surface has been successful, its potential as a neural implant coating remains unclear. Here, we introduce conductive and nerve growth factor-releasing AAM substrates that not only provide the native nanoporous morphology for cell adhesion, but also induce neural differentiation. We recently reported the fabrication of such conductive membranes by coating AAMs with a thin C layer. In this study, we investigated the influence of electrical stimulus, surface topography, and chemistry on cell adhesion, neurite extension, and density by using PC 12 pheochromocytoma cells in a custom-made glass microwell setup. The conductive AAMs showed enhanced neurite extension and generation with the electrical stimulus, but cell adhesion on these substrates was poorer compared to the naked AAMs. The latter nanoporous material presents chemical and topographical features for superior neuronal cell adhesion, but, more importantly, when loaded with nerve growth factor, it can provide neurite extension similar to an electrically stimulated CAAM counterpart. Copyright © 2016 Elsevier B.V. All rights reserved.

Chemical structure of interfaces

NASA Technical Reports Server (NTRS)

Grunthaner, F. J.

1985-01-01

The interfacial structure of silicon/dielectric and silicon/metal systems is particularly amenable to analysis using a combination of surface spectroscopies together with a variety of chemical structures of Si/SiO2, Si/SiO2Si3N4, Si/Si2N2O, Si/SiO2/Al, and Si/Native Oxide interfaces using high resolution (0.350 eV FWHM) X ray photoelectron spectroscopy. The general structure of these dielectric interfaces entails a monolayer chemical transition layer at the Si/dielectric boundary. Amorphous Si substrates show a wide variety of hydrogenated Si and Si(OH) sub x states that are not observed in thermal oxidation of single crystal material. Extended SiO2 layers greater than 8 A in thickness are shown to be stoichiometric SiO2, but to exhibit a wide variety of local network structures. In the nitrogen containing systems, an approach to stoichiometric oxynitride compounds with interesting impurity and electron trapping properties are seen. In native oxides, substantial topographical nonuniformity in oxide thickness and composition are found. Analysis of metal/oxide interfacial layers is accomplished by analytical removal of the Si substrate by UHV XeF2 dry etching methods.

Tectonic geomorphology of the New Madrid seismic zone based on imaging of digital topographic data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mayer, L.

1993-03-01

Topographic analysis using digital elevation data of the New Madrid region focuses on topographic features that occur at several spatial scales and can be used to delineate distinct anomalies. In this region, topographic anomalies occur as domal or elongate uplifts and bowl-shaped depressions approximately 1--10 km in size, topographic lineaments, and differences in topographic blocking across 50 km long boundaries. In order to fully explain these topographic anomalies, tectonic processes may be required. Imaging is based on digital topographic data from USGS 30 arc-second, 3 arc-second, and 30 m resolutions. Imaging of these data uses standard imaging processing techniques tomore » examine topography within the contexts of geomorphological hypothesis testing. A good example is the use of thresholding to highlight areas of unusually high elevation given the hypothesis of fluvial landscape architecture. Thresholding delineates topographic features such as the Tiptonville dome which is strongly believed to be tectonic in origin. To determine the pattern of topographic blocking, defined as a pattern that topography assumes when constrained by active forces other than erosion alone, low frequency passing spatial convolutions are used as filters and the resulting data are sliced into blocks according to pseudoelevations that produce a stable block pattern. The resultant blocks are analyzed according to its structural pattern of block size and block orientation. This analysis suggests that a topographic boundary cuts across the Mississippi embayment from near the Newport pluton on the west, to the area south of Memphis on east.« less

Quartz tuning fork-based frequency modulation atomic force spectroscopy and microscopy with all digital phase-locked loop

NASA Astrophysics Data System (ADS)

An, Sangmin; Hong, Mun-heon; Kim, Jongwoo; Kwon, Soyoung; Lee, Kunyoung; Lee, Manhee; Jhe, Wonho

2012-11-01

We present a platform for the quartz tuning fork (QTF)-based, frequency modulation atomic force microscopy (FM-AFM) system for quantitative study of the mechanical or topographical properties of nanoscale materials, such as the nano-sized water bridge formed between the quartz tip (˜100 nm curvature) and the mica substrate. A thermally stable, all digital phase-locked loop is used to detect the small frequency shift of the QTF signal resulting from the nanomaterial-mediated interactions. The proposed and demonstrated novel FM-AFM technique provides high experimental sensitivity in the measurement of the viscoelastic forces associated with the confined nano-water meniscus, short response time, and insensitivity to amplitude noise, which are essential for precision dynamic force spectroscopy and microscopy.

Quartz tuning fork-based frequency modulation atomic force spectroscopy and microscopy with all digital phase-locked loop.

PubMed

An, Sangmin; Hong, Mun-heon; Kim, Jongwoo; Kwon, Soyoung; Lee, Kunyoung; Lee, Manhee; Jhe, Wonho

2012-11-01

We present a platform for the quartz tuning fork (QTF)-based, frequency modulation atomic force microscopy (FM-AFM) system for quantitative study of the mechanical or topographical properties of nanoscale materials, such as the nano-sized water bridge formed between the quartz tip (~100 nm curvature) and the mica substrate. A thermally stable, all digital phase-locked loop is used to detect the small frequency shift of the QTF signal resulting from the nanomaterial-mediated interactions. The proposed and demonstrated novel FM-AFM technique provides high experimental sensitivity in the measurement of the viscoelastic forces associated with the confined nano-water meniscus, short response time, and insensitivity to amplitude noise, which are essential for precision dynamic force spectroscopy and microscopy.

Evidence for an eolian origin for the silt-enriched soil mantles on the glaciated uplands of eastern Upper Michigan, USA

USGS Publications Warehouse

Schaetzl, R.J.; Loope, W.L.

2008-01-01

We provide textural, geochemical, and mineralogical data on a thin, silty deposit that unconformably mantles glaciated uplands in the eastern Upper Peninsula of Michigan. Previous research on this deposit, which we hypothesize to be loess, is nonexistent. The uplands were islands or narrow peninsulas within one or more glacial lakes. We compare the distribution, likely source and nature of the 20-60??cm thick silty mantle by using the loess formation model of Mason et al. [Mason, J.A., Nater, E.A., Zanner, C.W., Bell, J.C., 1999. A new model of topographic effects on the distribution of loess. Geomorphology 28, 223-236], which focuses on the generation of eolian silt by saltating sand across upwind, barren surfaces. Parabolic dunes, with arms open to the NW, are common on former lake floors upwind of the silt-mantled uplands, attesting to the strength and direction of paleowinds. The abrupt termination of the dunes at the footslopes of the uplands, associated with silt deposition on upland soil surfaces in downwind locations, are both consistent with the model of Mason et al. [Mason, J.A., Nater, E.A., Zanner, C.W., Bell, J.C., 1999. A new model of topographic effects on the distribution of loess. Geomorphology 28, 223-236]. Sediments on former lake floors contain abundant strata of fine/medium sand and silt, and thus are likely sources for the silt and dune sand. The cap, dune and lake sediments are similar along many different geochemical axes, whereas the substrate sediment, i.e., the drift below the cap, is unique. Cap sediments, normally containing roughly 30% silt, are enriched in quartz and depleted in Ti and Zr, relative to dune sediment. The dune sediment, a more residual eolian deposit, is enriched in Ti and Zr, relative to the cap, probably due to its greater abundance of heavy minerals. Therefore, we conclude that the silty cap is loess that was deflated from abandoned lake floors after nearby glacial lakes drained, probably contemporaneously with dune migration across the former lake floors. ?? 2008 Elsevier B.V. All rights reserved.

Tuning and predicting the wetting of nanoengineered material surface

NASA Astrophysics Data System (ADS)

Ramiasa-MacGregor, M.; Mierczynska, A.; Sedev, R.; Vasilev, K.

2016-02-01

The wetting of a material can be tuned by changing the roughness on its surface. Recent advances in the field of nanotechnology open exciting opportunities to control macroscopic wetting behaviour. Yet, the benchmark theories used to describe the wettability of macroscopically rough surfaces fail to fully describe the wetting behaviour of systems with topographical features at the nanoscale. To shed light on the events occurring at the nanoscale we have utilised model gradient substrata where surface nanotopography was tailored in a controlled and robust manner. The intrinsic wettability of the coatings was varied from hydrophilic to hydrophobic. The measured water contact angle could not be described by the classical theories. We developed an empirical model that effectively captures the experimental data, and further enables us to predict the wetting of surfaces with nanoscale roughness by considering the physical and chemical properties of the material. The fundamental insights presented here are important for the rational design of advanced materials having tailored surface nanotopography with predictable wettability.The wetting of a material can be tuned by changing the roughness on its surface. Recent advances in the field of nanotechnology open exciting opportunities to control macroscopic wetting behaviour. Yet, the benchmark theories used to describe the wettability of macroscopically rough surfaces fail to fully describe the wetting behaviour of systems with topographical features at the nanoscale. To shed light on the events occurring at the nanoscale we have utilised model gradient substrata where surface nanotopography was tailored in a controlled and robust manner. The intrinsic wettability of the coatings was varied from hydrophilic to hydrophobic. The measured water contact angle could not be described by the classical theories. We developed an empirical model that effectively captures the experimental data, and further enables us to predict the wetting of surfaces with nanoscale roughness by considering the physical and chemical properties of the material. The fundamental insights presented here are important for the rational design of advanced materials having tailored surface nanotopography with predictable wettability. Electronic supplementary information (ESI) available: Detailed characterization of the nanorough substrates and model derivation. See DOI: 10.1039/c5nr08329j

Does Translational Symmetry Matter on the Micro Scale? Fibroblastic and Osteoblastic Interactions with the Topographically Distinct Poly(ε-caprolactone)/Hydroxyapatite Thin Films

PubMed Central

2015-01-01

Material composition and topography of the cell-contacting material interface are important considerations in the design of biomaterials at the nano and micro scales. This study is one of the first to have assessed the osteoblastic response to micropatterned polymer–ceramic composite surfaces. In particular, the effect of topographic variations of composite poly(ε-caprolactone)/hydroxyapatite (PCL/HAp) films on viability, proliferation, migration and osteogenesis of fibroblastic and osteoblastic MC3T3-E1 cells was evaluated. To that end, three different micropatterned PCL/HAp films were compared: flat and textured, the latter of which included films comprising periodically arranged and randomly distributed oval topographic features 10 μm in diameter, 20 μm in separation and 10 μm in height, comparable to the dimensions of MC3T3-E1 cells. PCL/HAp films were fabricated by the combination of a bottom-up, soft chemical synthesis of the ceramic, nanoparticulate phase and a top-down, photolithographic technique for imprinting fine, microscale features on them. X-ray diffraction analysis indicated an isotropic orientation of both the polymeric chains and HAp crystallites in the composite samples. Biocompatibility tests indicated no significant decrease in their viability when grown on PCL/HAp films. Fibroblast proliferation and migration onto PCL/HAp films proceeded slower than on the control borosilicate glass, with the flat composite film fostering more cell migration activity than the films containing topographic features. The gene expression of seven analyzed osteogenic markers, including procollagen type I, osteocalcin, osteopontin, alkaline phosphatase, and the transcription factors Runx2 and TGFβ-1, was, however, consistently upregulated in cells grown on PCL/HAp films comprising periodically ordered topographic features, suggesting that the higher levels of symmetry of the topographic ordering impose a moderate mechanochemical stress on the adherent cells and thus promote a more favorable osteogenic response. The obtained results suggest that topography can be a more important determinant of the cell/surface interaction than the surface chemistry and/or stiffness as well as that the regularity of the distribution of topographic features can be a more important variable than the topographic features per se. PMID:25014232

[Effect of topographical factors on podophyllotoxin content in Sinopodophyllum hexandrum and study on ecological suitability].

PubMed

Wu, Ao-lin; Li, Min; Zhang, Shou-wen; Zhao, Ji-feng; Liu, Xiang; Wang, Chang-hua; Wang, Xiao-yun; Zhong, Guo-yue

2015-06-01

In order to find the optimal topographical factor for regionslization, the content of cimetidine in 116 Sinopodophyllum hexandrum sample collected from Sichuan, Qinghai, Gansu, Tibet, Yunnan and Shaanxi provinces, was determined. Using mathematical statistics and geographical spatial analysis of GIS analysis, the relationship between content of podophyllotoxin and influencing factors including altitude gradient and gradient position was analyzed. It is found that the optimal altitude was 2 800 m to 3 600 m, the aspect of slope north or northeast and northwest and the slope 12 degrees to 65 degrees with a high suitability degree. Considering the artificial planting, the suitable planting area for S. hexandrum is comfirmed. The topographical factor is important for S. hexandrum regionalization, but has hardly effect on podophyllotoxin content. The results of the study provide an important scientific basis for S. hexandrum production development. But there are many factors which affect suitability index and podophyllotoxin content of S. hexandrum, it is necessary to consider other factors like climate and soil while exploitation and protection of S. hexandrum.

Effects of topography on the transport of agricultural chemicals to groundwater in a sand-plain setting

NASA Astrophysics Data System (ADS)

Delin, Geoffrey N.; Landon, Matthew K.

2002-08-01

Geochemical data were collected to investigate the effects of topography and focused recharge on the transport of agricultural chemicals to groundwater through sandy soils. The research was done at a topographically high (upland) site and a depressional (lowland) site within a corn field. Agricultural chemicals that move readily with water were most directly affected by focused recharge to the lowland site. Surface runoff of water to the lowland site was the primary cause for the generally greater flux of chloride, nitrate nitrogen, and sulfate compared with the upland site. Based on data from the unsaturated zone, for example, the average annual fluxes of these chemicals in 1992-1993 were 5.1, 3.4, and 1.7 times greater, respectively, at the lowland site. Study results indicate that consideration should be given to modifying site-specific management farming technology to account for varying recharge rates in different topographic settings. By reducing chemical application rates in topographic depressions, where focused recharge of chemicals occurs because of surface runoff, farmers could improve ground-water quality as well as reduce expenditures for agricultural chemicals.

Effects of topography on the transport of agricultural chemicals to groundwater in a sand-plain setting

USGS Publications Warehouse

Delin, G.N.; Landon, M.K.

2002-01-01

Geochemical data were collected to investigate the effects of topography and focused recharge on the transport of agricultural chemicals to groundwater through sandy soils. The research was done at a topographically high (upland) site and a depressional (lowland) site within a corn field. Agricultural chemicals that move readily with water were most directly affected by focused recharge to the lowland site. Surface runoff of water to the lowland site was the primary cause for the generally greater flux of chloride, nitrate nitrogen, and sulfate compared with the upland site. Based on data from the unsaturated zone, for example, the average annual fluxes of these chemicals in 1992–1993 were 5.1, 3.4, and 1.7 times greater, respectively, at the lowland site. Study results indicate that consideration should be given to modifying site-specific management farming technology to account for varying recharge rates in different topographic settings. By reducing chemical application rates in topographic depressions, where focused recharge of chemicals occurs because of surface runoff, farmers could improve ground-water quality as well as reduce expenditures for agricultural chemicals.

Asymmetric neighborhood functions accelerate ordering process of self-organizing maps

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ota, Kaiichiro; Aoki, Takaaki; Kurata, Koji

2011-02-15

A self-organizing map (SOM) algorithm can generate a topographic map from a high-dimensional stimulus space to a low-dimensional array of units. Because a topographic map preserves neighborhood relationships between the stimuli, the SOM can be applied to certain types of information processing such as data visualization. During the learning process, however, topological defects frequently emerge in the map. The presence of defects tends to drastically slow down the formation of a globally ordered topographic map. To remove such topological defects, it has been reported that an asymmetric neighborhood function is effective, but only in the simple case of mapping one-dimensionalmore » stimuli to a chain of units. In this paper, we demonstrate that even when high-dimensional stimuli are used, the asymmetric neighborhood function is effective for both artificial and real-world data. Our results suggest that applying the asymmetric neighborhood function to the SOM algorithm improves the reliability of the algorithm. In addition, it enables processing of complicated, high-dimensional data by using this algorithm.« less

Modelling of Singapore's topographic transformation based on DEMs

NASA Astrophysics Data System (ADS)

Wang, Tao; Belle, Iris; Hassler, Uta

2015-02-01

Singapore's topography has been heavily transformed by industrialization and urbanization processes. To investigate topographic changes and evaluate soil mass flows, historical topographic maps of 1924 and 2012 were employed, and basic topographic features were vectorized. Digital elevation models (DEMs) for the two years were reconstructed based on vector features. Corresponding slope maps, a surface difference map and a scatter plot of elevation changes were generated and used to quantify and categorize the nature of the topographic transformation. The surface difference map is aggregated into five main categories of changes: (1) areas without significant height changes, (2) lowered-down areas where hill ranges were cut down, (3) raised-up areas where valleys and swamps were filled in, (4) reclaimed areas from the sea, and (5) new water-covered areas. Considering spatial proximity and configurations of different types of changes, topographic transformation can be differentiated as either creating inland flat areas or reclaiming new land from the sea. Typical topographic changes are discussed in the context of Singapore's urbanization processes. The two slope maps and elevation histograms show that generally, the topographic surface of Singapore has become flatter and lower since 1924. More than 89% of height changes have happened within a range of 20 m and 95% have been below 40 m. Because of differences in land surveying and map drawing methods, uncertainties and inaccuracies inherent in the 1924 topographic maps are discussed in detail. In this work, a modified version of a traditional scatter plot is used to present height transformation patterns intuitively. This method of deriving categorical maps of topographical changes from a surface difference map can be used in similar studies to qualitatively interpret transformation. Slope maps and histograms were also used jointly to reveal additional patterns of topographic change.

SAR imaging and hydrodynamic analysis of ocean bottom topographic waves

NASA Astrophysics Data System (ADS)

Zheng, Quanan; Li, Li; Guo, Xiaogang; Ge, Yong; Zhu, Dayong; Li, Chunyan

2006-09-01

The satellite synthetic aperture radar (SAR) images display wave-like patterns of the ocean bottom topographic features at the south outlet of Taiwan Strait (TS). Field measurements indicate that the most TS water body is vertically stratified. However, SAR imaging models available were developed for homogeneous waters. Hence explaining SAR imaging mechanisms of bottom features in a stratified ocean is beyond the scope of those models. In order to explore these mechanisms and to determine the quantitative relations between the SAR imagery and the bottom features, a two-dimensional, three-layer ocean model with sinusoidal bottom topographic features is developed. Analytical solutions and inferences of the momentum equations of the ocean model lead to the following conditions. (1) In the lower layer, the topography-induced waves (topographic waves hereafter) exist in the form of stationary waves, which satisfy a lower boundary resonance condition σ = kC0, here σ is an angular frequency of the stationary waves, k is a wavenumber of bottom topographic corrugation, and C0 is a background current speed. (2) As internal waves, the topographic waves may propagate vertically to the upper layer with an unchanged wavenumber k, if a frequency relation N3 < σ < N2 is satisfied, here N2 and N3 are the Brunt-Wäisälä frequencies of middle layer and upper layer, respectively. (3) The topographic waves are extremely amplified if an upper layer resonance condition is satisfied. The SAR image of topographic waves is derived on the basis of current-modulated small wave spectra. The results indicate that the topographic waves on SAR images have the same wavelength of bottom topographic corrugation, and the imagery brightness peaks are either inphase or antiphase with respect to the topographic corrugation, depending on a sign of a coupling factor. These theoretical predictions are verified by field observations. The results of this study provide a physical basis for quantitative interpretation of SAR images of bottom topographic waves in the stratified ocean.

Effect of incorporation of a new antimicrobial nanomaterial on the physical-chemical properties of endodontic sealers

PubMed Central

Vilela Teixeira, Ana Beatriz; Vidal, Carla Larissa; de Castro, Denise Tornavoi; da Costa Valente, Mariana Lima; Oliveira-Santos, Christiano; Alves, Oswaldo Luis; dos Reis, Andréa Cândido

2017-01-01

Objectives: The objective of the study is to incorporate the nanostructured silver vanadate (AgVO3) decorated with silver nanoparticles at endodontic sealers AH Plus, Sealapex, Sealer 26, and Endofill, at concentrations of 2.5%, 5%, and 10%, and to evaluate physical-chemical properties. Materials and Methods: The study was to evaluate the radiopacity using digital radiography (n = 5), the tooth color change in 48 incisors (n = 3) for 7, 30, 90, and 180 days in a spectrophotometer, and the topographic distribution in a confocal laser (n = 5). The radiopacity was analyzed by Kruskal–Wallis test and the permutation (α = 0.05) and the color and topographical distribution by descriptive statistical analysis. Results: The AgVO3 had no effect on the radiopacity of Endofill and Sealapex (P > 0.05) and at 2.5% concentrations increased the radiopacity of Sealer 26 and AH Plus (P < 0.05). The Endofill 10% showed less color change, and the major changes were the modified groups in 180 days. The AgVO3 showed a circular topographic distribution in areas of the sealers. Conclusion: It was found that the addition of AgVO3 did not affect the radiopacity of Endofill and Sealapex however, increased the radipacity of Sealer 26 and AH Plus. For modified groups, the greatest color change was promoted after 180 days, except for Endofill with 10%. Topographic distribution of nanomaterial affected the color change of theevaluated sealers. PMID:29430089

Form drag in rivers due to small-scale natural topographic features: 1. Regular sequences

USGS Publications Warehouse

Kean, J.W.; Smith, J.D.

2006-01-01

Small-scale topographic features are commonly found on the boundaries of natural rivers, streams, and floodplains. A simple method for determining the form drag on these features is presented, and the results of this model are compared to laboratory measurements. The roughness elements are modeled as Gaussian-shaped features defined in terms of three parameters: a protrusion height, H; a streamwise length scale, ??; and a spacing between crests, ??. This shape is shown to be a good approximation to a wide variety of natural topographic bank features. The form drag on an individual roughness element embedded in a series of identical elements is determined using the drag coefficient of the individual element and a reference velocity that includes the effects of roughness elements further upstream. In addition to calculating the drag on each element, the model determines the spatially averaged total stress, skin friction stress, and roughness height of the boundary. The effects of bank roughness on patterns of velocity and boundary shear stress are determined by combining the form drag model with a channel flow model. The combined model shows that drag on small-scale topographic features substantially alters the near-bank flow field. These methods can be used to improve predictions of flow resistance in rivers and to form the basis for fully predictive (no empirically adjusted parameters) channel flow models. They also provide a foundation for calculating the near-bank boundary shear stress fields necessary for determining rates of sediment transport and lateral erosion.

Seismically induced rock slope failures resulting from topographic amplification of strong ground motions: The case of Pacoima Canyon, California

USGS Publications Warehouse

Sepulveda, S.A.; Murphy, W.; Jibson, R.W.; Petley, D.N.

2005-01-01

The 1994 Northridge earthquake (Mw = 6.7) triggered extensive rock slope failures in Pacoima Canyon, immediately north of Los Angeles, California. Pacoima Canyon is a narrow and steep canyon incised in gneissic and granitic rocks. Peak accelerations of nearly 1.6 g were recorded at a ridge that forms the left abutment of Pacoima Dam; peak accelerations at the bottom of the canyon were less than 0.5 g, suggesting the occurrence of topographic amplification. Topographic effects have been previously suggested to explain similarly high ground motions at the site during the 1971 (Mw = 6.7) San Fernando earthquake. Furthermore, high landslide concentrations observed in the area have been attributed to unusually strong ground motions rather than higher susceptibility to sliding compared with nearby zones. We conducted field investigations and slope stability back-analyses to confirm the impact of topographic amplification on the triggering of landslides during the 1994 earthquake. Our results suggest that the observed extensive rock sliding and falling would have not been possible under unamplified seismic conditions, which would have generated a significantly lower number of areas affected by landslides. In contrast, modelling slope stability using amplified ground shaking predicts slope failure distributions matching what occurred in 1994. This observation confirms a significant role for topographic amplification on the triggering of landslides at the site, and emphasises the need to select carefully the inputs for seismic slope stability analyses. ?? 2005 Elsevier B.V. All rights reserved.

Spatial pattern and heterogeneity of soil moisture along a transect in a small catchment on the Loess Plateau

NASA Astrophysics Data System (ADS)

Yang, Yang; Dou, Yanxing; Liu, Dong; An, Shaoshan

2017-07-01

Spatial pattern and heterogeneity of soil moisture is important for the hydrological process on the Loess Plateau. This study combined the classical and geospatial statistical techniques to examine the spatial pattern and heterogeneity of soil moisture along a transect scale (e.g. land use types and topographical attributes) on the Loess Plateau. The average values of soil moisture were on the order of farmland > orchard > grassland > abandoned land > shrubland > forestland. Vertical distribution characteristics of soil moisture (0-500 cm) were similar among land use types. Highly significant (p < 0.01) negative correlations were found between soil moisture and elevation (h) except for shrubland (p > 0.05), whereas no significant correlations were found between soil moisture and plan curvature (Kh), stream power index (SPI), compound topographic index (CTI) (p > 0.05), indicating that topographical attributes (mainly h) have a negative effect on the soil moisture spatial heterogeneity. Besides, soil moisture spatial heterogeneity decreased from forestland to grassland and farmland, accompanied by a decline from 15° to 1° alongside upper to lower slope position. This study highlights the importance of land use types and topographical attributes on the soil moisture spatial heterogeneity from a combined analysis of the structural equation model (SEM) and generalized additive models (GAMs), and the relative contribution of land use types to the soil moisture spatial heterogeneity was higher than that of topographical attributes, which provides insights for researches focusing on soil moisture varitions on the Loess Plateau.

LASIK for spherical refractive myopia: effect of topographic astigmatism (ocular residual astigmatism, ORA) on refractive outcome.

PubMed

Frings, Andreas; Richard, Gisbert; Steinberg, Johannes; Skevas, Christos; Druchkiv, Vasyl; Katz, Toam; Linke, Stephan J

2015-01-01

In eyes with a preoperative plano refractive cylinder, it would appear that there is no rationale for astigmatic treatment. The aim of this retrospective, cross-sectional data analysis was to determine the amount of topographic astigmatism in refractive plano eyes that results in reduced efficacy after myopic laser in situ keratomileusis (LASIK). This study included 267 eyes from 267 consecutive myopic patients with a refractive plano cylinder. Receiver operating characteristic analysis was used to find the cut-off values of preoperative ocular residual astigmatism (= topographic astigmatism) that can best discriminate between groups of efficacy and safety indices in preoperative plano refractive cylinder eyes. Preoperative ocular residual astigmatism (ORA) (or topographic astigmatism) of ≤0.9 diopters (D) resulted in an efficacy index of at least 0.8 statistically significantly more frequently than eyes with a preoperative ORA of >0.9 D. Eyes with a high ORA preoperatively also had a high ORA postoperatively. Regression analysis showed that each diopter of preoperative ORA reduced efficacy by 0.07. A preoperative corneal astigmatism of ≥0.9 D could (partially) be taken into account in the LASIK design, even if the subjective refractive astigmatism is neutral.

Debris flow-induced topographic changes: effects of recurrent debris flow initiation.

PubMed

Chen, Chien-Yuan; Wang, Qun

2017-08-12

Chushui Creek in Shengmu Village, Nantou County, Taiwan, was analyzed for recurrent debris flow using numerical modeling and geographic information system (GIS) spatial analysis. The two-dimensional water flood and mudflow simulation program FLO-2D were used to simulate debris flow induced by rainfall during typhoon Herb in 1996 and Mindulle in 2004. Changes in topographic characteristics after the debris flows were simulated for the initiation of hydrological characteristics, magnitude, and affected area. Changes in topographic characteristics included those in elevation, slope, aspect, stream power index (SPI), topographic wetness index (TWI), and hypsometric curve integral (HI), all of which were analyzed using GIS spatial analysis. The results show that the SPI and peak discharge in the basin increased after a recurrence of debris flow. The TWI was higher in 2003 than in 2004 and indicated higher potential of landslide initiation when the slope of the basin was steeper. The HI revealed that the basin was in its mature stage and was shifting toward the old stage. Numerical simulation demonstrated that the parameters' mean depth, maximum depth, affected area, mean flow rate, maximum flow rate, and peak flow discharge were increased after recurrent debris flow, and peak discharge occurred quickly.

Ferromagnetic resonance in a topographically modulated permalloy film

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sklenar, J.; Tucciarone, P.; Lee, R. J.

2015-04-01

A major focus within the field of magnonics involves the manipulation and control spin wave modes. This is usually done by patterning continuous soft magnetic films. Here, we report on work in which we use topographic modifications of a continuous magnetic thin film, rather than lithographic patterning techniques, to modify the magnon spectrum. To demonstrate this technique we have performed in-plane, broad-band, ferromagnetic res- onance studies on a 100 nm Permalloy film sputtered unto a colloidal crystal with individual sphere diameters of 200 nm. Effects resulting from the, ideally, six-fold symmetric underlying colloidal crystal were studied as a function ofmore » the in plane field angle through experiment and micromagnetic modeling. Experimentally, we find two primary spin wave modes; the ratio of the amplitude of these two modes exhibits a six-fold dependence. Modeling shows that both modes are fundamental modes that are nodeless in the unit cell but reside in different demagnetized regions of the unit cell. Additionally, modeling suggests the presence of new higher order topographically modified spin wave modes. Our results demonstrate that topographic modification of magnetic thin films opens new directions for manipulating spin wave modes.« less

Litter Species Composition and Topographic Effects on Fuels and Modeled Fire Behavior in an Oak-Hickory Forest in the Eastern USA

PubMed Central

Hutchinson, Todd F.; Dietenberger, Mark; Matt, Frederick; Peters, Matthew P.

2016-01-01

Mesophytic species (esp. Acer rubrum) are increasingly replacing oaks (Quercus spp.) in fire-suppressed, deciduous oak-hickory forests of the eastern US. A pivotal hypothesis is that fuel beds derived from mesophytic litter are less likely than beds derived from oak litter to carry a fire and, if they do, are more likely to burn at lower intensities. Species effects, however, are confounded by topographic gradients that affect overstory composition and fuel bed decomposition. To examine the separate and combined effects of litter species composition and topography on surface fuel beds, we conducted a common garden experiment in oak-hickory forests of the Ohio Hills. Each common garden included beds composed of mostly oak and mostly maple litter, representative of oak- and maple-dominated stands, respectively, and a mixture of the two. Beds were replenished each fall for four years. Common gardens (N = 16) were established at four topographic positions (ridges, benches on south- and northeast-facing slopes, and stream terraces) at each of four sites. Litter source and topographic position had largely independent effects on fuel beds and modeled fire dynamics after four years of development. Loading (kg m-2) of the upper litter layer (L), the layer that primarily supports flaming spread, was least in more mesic landscape positions and for maple beds, implying greater decomposition rates for those situations. Bulk density in the L layer (kg m-3) was least for oak beds which, along with higher loading, would promote fire spread and fireline intensity. Loading and bulk density of the combined fermentation and humic (FH) layers were least on stream terrace positions but were not related to species. Litter- and FH-layer moistures during a 5-day dry-down period after a rain event were affected by time and topographic effects while litter source effects were not evident. Characteristics of flaming combustion determined with a cone calorimeter pointed to greater fireline intensity for oak fuel beds and unexpected interactions between litter source and topography. A spread index, which synthesizes a suite of fuel bed, particle, and combustion characteristics to indicate spread (vs extinction) potential, was primarily affected by litter source and, secondarily, by the low spread potentials on mesic landscape positions early in the 5-day dry-down period. A similar result was obtained for modeled fireline intensity. Our results suggest that the continuing transition from oaks to mesophytic species in the Ohio Hills will reduce fire spread potentials and fire intensities. PMID:27536964

Litter Species Composition and Topographic Effects on Fuels and Modeled Fire Behavior in an Oak-Hickory Forest in the Eastern USA.

PubMed

Dickinson, Matthew B; Hutchinson, Todd F; Dietenberger, Mark; Matt, Frederick; Peters, Matthew P

2016-01-01

Mesophytic species (esp. Acer rubrum) are increasingly replacing oaks (Quercus spp.) in fire-suppressed, deciduous oak-hickory forests of the eastern US. A pivotal hypothesis is that fuel beds derived from mesophytic litter are less likely than beds derived from oak litter to carry a fire and, if they do, are more likely to burn at lower intensities. Species effects, however, are confounded by topographic gradients that affect overstory composition and fuel bed decomposition. To examine the separate and combined effects of litter species composition and topography on surface fuel beds, we conducted a common garden experiment in oak-hickory forests of the Ohio Hills. Each common garden included beds composed of mostly oak and mostly maple litter, representative of oak- and maple-dominated stands, respectively, and a mixture of the two. Beds were replenished each fall for four years. Common gardens (N = 16) were established at four topographic positions (ridges, benches on south- and northeast-facing slopes, and stream terraces) at each of four sites. Litter source and topographic position had largely independent effects on fuel beds and modeled fire dynamics after four years of development. Loading (kg m-2) of the upper litter layer (L), the layer that primarily supports flaming spread, was least in more mesic landscape positions and for maple beds, implying greater decomposition rates for those situations. Bulk density in the L layer (kg m-3) was least for oak beds which, along with higher loading, would promote fire spread and fireline intensity. Loading and bulk density of the combined fermentation and humic (FH) layers were least on stream terrace positions but were not related to species. Litter- and FH-layer moistures during a 5-day dry-down period after a rain event were affected by time and topographic effects while litter source effects were not evident. Characteristics of flaming combustion determined with a cone calorimeter pointed to greater fireline intensity for oak fuel beds and unexpected interactions between litter source and topography. A spread index, which synthesizes a suite of fuel bed, particle, and combustion characteristics to indicate spread (vs extinction) potential, was primarily affected by litter source and, secondarily, by the low spread potentials on mesic landscape positions early in the 5-day dry-down period. A similar result was obtained for modeled fireline intensity. Our results suggest that the continuing transition from oaks to mesophytic species in the Ohio Hills will reduce fire spread potentials and fire intensities.

Development and evaluation of a specialized task taxonomy for spatial planning - A map literacy experiment with topographic maps

NASA Astrophysics Data System (ADS)

Rautenbach, Victoria; Coetzee, Serena; Çöltekin, Arzu

2017-05-01

Topographic maps are among the most commonly used map types, however, their complex and information-rich designs depicting natural, human-made and cultural features make them difficult to read. Regardless of their complexity, spatial planners make extensive use of topographic maps in their work. On the other hand, various studies suggest that map literacy among the development planning professionals in South Africa is not very high. The widespread use of topographic maps combined with the low levels of map literacy presents challenges for effective development planning. In this paper we address some of these challenges by developing a specialized task taxonomy based on systematically assessed map literacy levels; and conducting an empirical experiment with topographic maps to evaluate our task taxonomy. In such empirical studies if non-realistic tasks are used, the results of map literacy tests may be skewed. Furthermore, experience and familiarity with the studied map type play a role in map literacy. There is thus a need to develop map literacy tests aimed at planners specifically. We developed a taxonomy of realistic map reading tasks typically executed during the planning process. The taxonomy defines six levels tasks of increasing difficulty and complexity, ranging from recognising symbols to extracting knowledge. We hypothesized that competence in the first four levels indicates functional map literacy. In this paper, we present results from an empirical experiment with 49 map literate participants solving a subset of tasks from the first four levels of the taxonomy with a topographic map. Our findings suggest that the proposed taxonomy is a good reference for evaluating topographic map literacy. Participants solved the tasks on all four levels as expected and we therefore conclude that the experiment based on the first four levels of the taxonomy successfully determined the functional map literacy of the participants. We plan to continue the study for the remaining levels, repeat the experiments with a group of map illiterate participants to confirm that the taxonomy can also be used to determine map illiteracy.

Lunar textural analysis based on WAC-derived kilometer-scale roughness and entropy maps

NASA Astrophysics Data System (ADS)

Li, Bo; Wang, XueQiang; Zhang, Jiang; Chen, Jian; Ling, Zongcheng

2016-06-01

In general, textures are thought to be some complicated repeated patterns formed by elements, or primitives which are sorted in certain rules. Lunar surfaces record the interactions between its outside environment and itself, thus, based on high-resolution DEM model or image data, there are some topographic features which have different roughness and entropy values or signatures on lunar surfaces. Textures of lunar surfaces can help us to concentrate on typical topographic and photometric variations and reveal the relationships between obvious features (craters, impact basins, sinuous rilles (SRs) and ridges) with resurfacing processes on the Moon. In this paper, the term surface roughness is an expression of the variability of a topographic or photometric surface at kilometer scale, and the term entropy can characterize the variability inherent in a geological and topographic unit and evaluate the uncertainty of predictions made by a given geological process. We use the statistical moments of gray-level histograms in different-sized neighborhoods (e.g., 3, 5, 10, 20, 40 and 80 pixels) to compute the kilometer-scale roughness and entropy values, using the mosaic image from 70°N to 70°S obtained by Lunar Reconnaissance Orbiter (LRO) Wide Angle Camera (WAC). Large roughness and entropy signatures were only found in the larger scale maps, while the smallest 3-pixel scale map had more disorderly and unsystematic textures. According to the entropy values in 10-pixel scale entropy map, we made a frequency curve and categorized lunar surfaces into three types, shadow effects, maria and highlands. A 2D scatter plot of entropy versus roughness values was produced and we found that there were two point clusters corresponding to the highlands and maria, respectively. In the last, we compared the topographic and photometric signatures derived from Lunar Orbiter Laser Altimeter (LOLA) data and WAC mosaic image. On the lunar surfaces, the ridges have obvious multilevel topographic textures which are sensitive to the topographic changes, while the ejecta deposits of fresh craters appear obvious photometric textures which are sensitive to the brightness variations.

Evolution of high-Arctic glacial landforms during deglaciation

NASA Astrophysics Data System (ADS)

Midgley, N. G.; Tonkin, T. N.; Graham, D. J.; Cook, S. J.

2018-06-01

Glacial landsystems in the high-Arctic have been reported to undergo geomorphological transformation during deglaciation. This research evaluates moraine evolution over a decadal timescale at Midtre Lovénbreen, Svalbard. This work is of interest because glacial landforms developed in Svalbard have been used as an analogue for landforms developed during Pleistocene mid-latitude glaciation. Ground penetrating radar was used to investigate the subsurface characteristics of moraines. To determine surface change, a LiDAR topographic data set (obtained 2003) and a UAV-derived (obtained 2014) digital surface model processed using structure-from-motion (SfM) are also compared. Evaluation of these data sets together enables subsurface character and landform response to climatic amelioration to be linked. Ground penetrating radar evidence shows that the moraine substrate at Midtre Lovénbreen includes ice-rich (radar velocities of 0.17 m ns-1) and debris-rich (radar velocities of 0.1-0.13 m ns-1) zones. The ice-rich zones are demonstrated to exhibit relatively high rates of surface change (mean thresholded rate of -4.39 m over the 11-year observation period). However, the debris-rich zones show a relatively low rate of surface change (mean thresholded rate of -0.98 m over the 11-year observation period), and the morphology of the debris-rich landforms appear stable over the observation period. A complex response of proglacial landforms to climatic warming is shown to occur within and between glacier forelands as indicated by spatially variable surface lowering rates. Landform response is controlled by the ice-debris balance of the moraine substrate, along with the topographic context (such as the influence of meltwater). Site-specific characteristics such as surface debris thickness and glaciofluvial drainage are, therefore, argued to be a highly important control on surface evolution in ice-cored terrain, resulting in a diverse response of high-Arctic glacial landsystems to climatic amelioration. These results highlight that care is needed when assessing the long-term preservation potential of contemporary landforms at high-Arctic glaciers. A better understanding of ice-cored terrain facilitates the development of appropriate age and climatic interpretations that can be obtained from palaeo ice-marginal landsystems.

Mesoscale numerical modeling of meteorological events in a strong topographic gradient in the northeastern part of Mexico

NASA Astrophysics Data System (ADS)

Pineda-Martinez, Luis F.; Carbajal, Noel

2009-08-01

A series of numerical experiments were carried out to study the effect of meteorological events such as warm and cold air masses on climatic features and variability of a understudied region with strong topographic gradients in the northeastern part of Mexico. We applied the mesoscale model MM5. We investigated the influence of soil moisture availability in the performance of the model under two representative events for winter and summer. The results showed that a better resolution in land use cover improved the agreement among observed and calculated data. The topography induces atmospheric circulation patterns that determine the spatial distribution of climate and seasonal behavior. The numerical experiments reveal regions favorable to forced convection on the eastern side of the mountain chains Eastern Sierra Madre and Sierra de Alvarez. These processes affect the vertical and horizontal structure of the meteorological variables along the topographic gradient.

Multispecies coexistence of trees in tropical forests: spatial signals of topographic niche differentiation increase with environmental heterogeneity.

PubMed

Brown, C; Burslem, D F R P; Illian, J B; Bao, L; Brockelman, W; Cao, M; Chang, L W; Dattaraja, H S; Davies, S; Gunatilleke, C V S; Gunatilleke, I A U N; Huang, J; Kassim, A R; Lafrankie, J V; Lian, J; Lin, L; Ma, K; Mi, X; Nathalang, A; Noor, S; Ong, P; Sukumar, R; Su, S H; Sun, I F; Suresh, H S; Tan, S; Thompson, J; Uriarte, M; Valencia, R; Yap, S L; Ye, W; Law, R

2013-08-07

Neutral and niche theories give contrasting explanations for the maintenance of tropical tree species diversity. Both have some empirical support, but methods to disentangle their effects have not yet been developed. We applied a statistical measure of spatial structure to data from 14 large tropical forest plots to test a prediction of niche theory that is incompatible with neutral theory: that species in heterogeneous environments should separate out in space according to their niche preferences. We chose plots across a range of topographic heterogeneity, and tested whether pairwise spatial associations among species were more variable in more heterogeneous sites. We found strong support for this prediction, based on a strong positive relationship between variance in the spatial structure of species pairs and topographic heterogeneity across sites. We interpret this pattern as evidence of pervasive niche differentiation, which increases in importance with increasing environmental heterogeneity.

Lava flow topographic measurements for radar data interpretation

NASA Technical Reports Server (NTRS)

Campbell, Bruce A.; Garvin, James B.

1993-01-01

Topographic profiles at 25- and 5-cm horizontal resolution for three sites along a lava flow on Kilauea Volcano are presented, and these data are used to illustrate techniques for surface roughness analysis. Height and slope distributions and the height autocorrelation function are evaluated as a function of varying lowpass filter wavelength for the 25-cm data. Rms slopes are found to increase rapidly with decreasing topographic scale and are typically much higher than those found by modeling of Magellan altimeter data for Venus. A more robust description of the surface roughness appears to be the ratio of rms height to surface height correlation length. For all three sites this parameter falls within the range of values typically found from model fits to Magellan altimeter waveforms. The 5-cm profile data are used to estimate the effect of small-scale roughness on quasi-specular scattering.

Silicon chip with capacitors and transistors for interfacing organotypic brain slice of rat hippocampus.

PubMed

Hutzler, Michael; Fromherz, Peter

2004-04-01

Probing projections between brain areas and their modulation by synaptic potentiation requires dense arrays of contacts for noninvasive electrical stimulation and recording. Semiconductor technology is able to provide planar arrays with high spatial resolution to be used with planar neuronal structures such as organotypic brain slices. To address basic methodical issues we developed a silicon chip with simple arrays of insulated capacitors and field-effect transistors for stimulation of neuronal activity and recording of evoked field potentials. Brain slices from rat hippocampus were cultured on that substrate. We achieved local stimulation of the CA3 region by applying defined voltage pulses to the chip capacitors. Recording of resulting local field potentials in the CA1 region was accomplished with transistors. The relationship between stimulation and recording was rationalized by a sheet conductor model. By combining a row of capacitors with a row of transistors we determined a simple stimulus-response matrix from CA3 to CA1. Possible contributions of inhomogeneities of synaptic projection, of tissue structure and of neuroelectronic interfacing were considered. The study provides the basis for a development of semiconductor chips with high spatial resolution that are required for long-term studies of topographic mapping.

In silico simulations of tunneling barrier measurements for molecular orbital-mediated junctions: A molecular orbital theory approach to scanning tunneling microscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terryn, Raymond J.; Sriraman, Krishnan; Olson, Joel A., E-mail: jolson@fit.edu

A new simulator for scanning tunneling microscopy (STM) is presented based on the linear combination of atomic orbitals molecular orbital (LCAO-MO) approximation for the effective tunneling Hamiltonian, which leads to the convolution integral when applied to the tip interaction with the sample. This approach intrinsically includes the structure of the STM tip. Through this mechanical emulation and the tip-inclusive convolution model, dI/dz images for molecular orbitals (which are closely associated with apparent barrier height, ϕ{sub ap}) are reported for the first time. For molecular adsorbates whose experimental topographic images correspond well to isolated-molecule quantum chemistry calculations, the simulator makes accuratemore » predictions, as illustrated by various cases. Distortions in these images due to the tip are shown to be in accord with those observed experimentally and predicted by other ab initio considerations of tip structure. Simulations of the tunneling current dI/dz images are in strong agreement with experiment. The theoretical framework provides a solid foundation which may be applied to LCAO cluster models of adsorbate–substrate systems, and is extendable to emulate several aspects of functional STM operation.« less

The use of multisensor images for Earth Science applications

NASA Technical Reports Server (NTRS)

Evans, D.; Stromberg, B.

1983-01-01

The use of more than one remote sensing technique is particularly important for Earth Science applications because of the compositional and textural information derivable from the images. The ability to simultaneously analyze images acquired by different sensors requires coregistration of the multisensor image data sets. In order to insure pixel to pixel registration in areas of high relief, images must be rectified to eliminate topographic distortions. Coregistered images can be analyzed using a variety of multidimensional techniques and the acquired knowledge of topographic effects in the images can be used in photogeologic interpretations.

Drainage and Landscape Evolution in the Bighorn Basin Accompanying Advection of the Yellowstone Hotspot Swell Through North America

NASA Astrophysics Data System (ADS)

Guerrero, E. F.; Meigs, A.

2012-12-01

Mantle plumes have been recognized to express themselves on the surface as long wavelength and low amplitude topographic swells. These swells are measured as positive geoid anomalies and include shorter wavelength topographic features such as volcanic edifices and pre-exisitng topography. Advection of the topographic swell is expected as the lithosphere passes over the plume uplift source. The hot spot swell occurs in the landscape as transient signal that is expressed with waxing and waning topography. Waxing topography occurs at the leading edge of the swell and is expressed as an increase in rock uplift that is preserved by rivers and landscapes. Advection of topography predicts a shift in a basin from deposition to incision, an increase in convexity of a transverse river's long profile and a lateral river migration in the direction of advection. The Yellowstone region has a strong positive geoid anomaly and the volcanic signal, which have been interpreted as the longer and shorter wavelength topographic expressions of the hot spot. These expressions of the hot spot developed in a part of North America with a compounded deformation and topographic history. Previous studies of the Yellowstone topographic swell have concentrated on the waning or trailing signal preserved in the Snake River Plain. Our project revisits the classic geomorphology study area in the Bighorn Basin of Wyoming and Montana, which is in leading edge of the swell. Present models identify the swell as having a 400 km in diameter and that it is centered on the Yellowstone caldera. If we assume advection to occur in concert with the caldera eruptive track, the Yellowstone swell has migrated to the northeast at a rate of 3 cm yr-1 and began acting on the Bighorn Basin's landscape between 3 and 2 Ma. The Bighorn Basin has an established history of a basin-wide switch from deposition to incision during the late Pliocene, yet the age control on the erosional evolution of the region is relative. This basin is an ideal location to quantify long wavelength dynamic topography due to its low relief. Long river profiles streams that are transverse to the topographic swell in the basin suggest a transient advective signal preserved as profile knickpoints. Abandoned strath terraces, stream piracy, drainage reorganization, and lateral channel migration within the Bighorn Basin are all consistent indicators of the advection of a topographic swell. However, the lack of a high-resolution absolute age chronology precludes us from attributing the primary landscape and drainage forcing to climate change or dynamic topography. Our future work will focus on the timing of geomorphic and river profile evolution to disentangle competing effects of topographic advection, climate, and other factors.

Hemisphere-Dependent Attentional Modulation of Human Parietal Visual Field Representations

PubMed Central

Silver, Michael A.

2015-01-01

Posterior parietal cortex contains several areas defined by topographically organized maps of the contralateral visual field. However, recent studies suggest that ipsilateral stimuli can elicit larger responses in the right than left hemisphere within these areas, depending on task demands. Here we determined the effects of spatial attention on the set of visual field locations (the population receptive field [pRF]) that evoked a response for each voxel in human topographic parietal cortex. A two-dimensional Gaussian was used to model the pRF in each voxel, and we measured the effects of attention on not only the center (preferred visual field location) but also the size (visual field extent) of the pRF. In both hemispheres, larger pRFs were associated with attending to the mapping stimulus compared with attending to a central fixation point. In the left hemisphere, attending to the stimulus also resulted in more peripheral preferred locations of contralateral representations, compared with attending fixation. These effects of attention on both pRF size and preferred location preserved contralateral representations in the left hemisphere. In contrast, attentional modulation of pRF size but not preferred location significantly increased representation of the ipsilateral (right) visual hemifield in right parietal cortex. Thus, attention effects in topographic parietal cortex exhibit hemispheric asymmetries similar to those seen in hemispatial neglect. Our findings suggest potential mechanisms underlying the behavioral deficits associated with this disorder. PMID:25589746

Templated dewetting: designing entirely self-organized platforms for photocatalysis.

PubMed

Altomare, Marco; Nguyen, Nhat Truong; Schmuki, Patrik

2016-12-01

Formation and dispersion of metal nanoparticles on oxide surfaces in site-specific or even arrayed configuration are key in various technological processes such as catalysis, photonics, electrochemistry and for fabricating electrodes, sensors, memory devices, and magnetic, optical, and plasmonic platforms. A crucial aspect towards an efficient performance of many of these metal/metal oxide arrangements is a reliable fabrication approach. Since the early works on graphoepitaxy in the 70s, solid state dewetting of metal films on patterned surfaces has been much explored and regarded as a most effective tool to form defined arrays of ordered metal particles on a desired substrate. While templated dewetting has been studied in detail, particularly from a mechanistic perspective on lithographically patterned Si surfaces, the resulting outstanding potential of its applications on metal oxide semiconductors, such as titania, has received only limited attention. In this perspective we illustrate how dewetting and particularly templated dewetting can be used to fabricate highly efficient metal/TiO 2 photocatalyst assemblies e.g. for green hydrogen evolution. A remarkable advantage is that the synthesis of such photocatalysts is completely based on self-ordering principles: anodic self-organized TiO 2 nanotube arrays that self-align to a highest degree of hexagonal ordering are an ideal topographical substrate for a second self-ordering process, that is, templated-dewetting of sputter-deposited metal thin films. The controllable metal/semiconductor coupling delivers intriguing features and functionalities. We review concepts inherent to dewetting and particularly templated dewetting, and outline a series of effective tools that can be synergistically interlaced to reach fine control with nanoscopic precision over the resulting metal/TiO 2 structures (in terms of e.g. high ordering, size distribution, site specific placement, alloy formation) to maximize their photocatalytic efficiency. These processes are easy to scale up and have a high throughput and great potential to be applied to fabricate not only (photo)catalytic materials but also a large palette of other functional nanostructured elements and devices.

Templated dewetting: designing entirely self-organized platforms for photocatalysis

PubMed Central

Altomare, Marco; Nguyen, Nhat Truong

2016-01-01

Formation and dispersion of metal nanoparticles on oxide surfaces in site-specific or even arrayed configuration are key in various technological processes such as catalysis, photonics, electrochemistry and for fabricating electrodes, sensors, memory devices, and magnetic, optical, and plasmonic platforms. A crucial aspect towards an efficient performance of many of these metal/metal oxide arrangements is a reliable fabrication approach. Since the early works on graphoepitaxy in the 70s, solid state dewetting of metal films on patterned surfaces has been much explored and regarded as a most effective tool to form defined arrays of ordered metal particles on a desired substrate. While templated dewetting has been studied in detail, particularly from a mechanistic perspective on lithographically patterned Si surfaces, the resulting outstanding potential of its applications on metal oxide semiconductors, such as titania, has received only limited attention. In this perspective we illustrate how dewetting and particularly templated dewetting can be used to fabricate highly efficient metal/TiO2 photocatalyst assemblies e.g. for green hydrogen evolution. A remarkable advantage is that the synthesis of such photocatalysts is completely based on self-ordering principles: anodic self-organized TiO2 nanotube arrays that self-align to a highest degree of hexagonal ordering are an ideal topographical substrate for a second self-ordering process, that is, templated-dewetting of sputter-deposited metal thin films. The controllable metal/semiconductor coupling delivers intriguing features and functionalities. We review concepts inherent to dewetting and particularly templated dewetting, and outline a series of effective tools that can be synergistically interlaced to reach fine control with nanoscopic precision over the resulting metal/TiO2 structures (in terms of e.g. high ordering, size distribution, site specific placement, alloy formation) to maximize their photocatalytic efficiency. These processes are easy to scale up and have a high throughput and great potential to be applied to fabricate not only (photo)catalytic materials but also a large palette of other functional nanostructured elements and devices. PMID:28567258

Use of shape-from-shading to characterize mucosal topography in celiac disease videocapsule images

PubMed Central

Ciaccio, Edward J; Bhagat, Govind; Lewis, Suzanne K; Green, Peter H

2017-01-01

AIM To use a computerized shape-from-shading technique to characterize the topography of the small intestinal mucosa. METHODS Videoclips comprised of 100-200 images each were obtained from the distal duodenum in 8 celiac and 8 control patients. Images with high texture were selected from each videoclip and projected from two to three dimensions by using grayscale pixel brightness as the Z-axis spatial variable. The resulting images for celiac patients were then ordered using the Marsh score to estimate the degree of villous atrophy, and compared with control data. RESULTS Topographic changes in celiac patient three-dimensional constructs were often more variable as compared to controls. The mean absolute derivative in elevation was 2.34 ± 0.35 brightness units for celiacs vs 1.95 ± 0.28 for controls (P = 0.014). The standard deviation of the derivative in elevation was 4.87 ± 0.35 brightness units for celiacs vs 4.47 ± 0.36 for controls (P = 0.023). Celiac patients with Marsh IIIC villous atrophy tended to have the largest topographic changes. Plotted in two dimensions, celiac data could be separated from controls with 80% sensitivity and specificity. CONCLUSION Use of shape-from-shading to construct three-dimensional projections approximating the actual spatial geometry of the small intestinal substrate is useful to observe features not readily apparent in two-dimensional videocapsule images. This method represents a potentially helpful adjunct to detect areas of pathology during videocapsule analysis. PMID:28744343

Linking Anomalously Low Topographic Relief in the Taiwan Arc-Continent Collision to a Submarine Plateau South of the Collision.

NASA Astrophysics Data System (ADS)

Byrne, T. B.; Lin, A. T.; Su, C. C.; Lewis, J. C.; Liu, C. S.; Ouimet, W. B.; Chen, T. T.; Huang, C.

2015-12-01

Ouimet et al. (2014; submitted) have recently described broad areas of anomalously low relief and slope that straddle the topographic ridge crest in Taiwan. The areas are anomalous because Taiwan also preserves some of the steepest topography in the world, as expected from the high rates of convergence, exhumation and erosion. In addition, several age-elevation data sets (see Hsu et al. this meeting), using new and previously published ZrnFT, ZrnHe and ApFT ages, show exhumation cooling rates of 3 to 5 mm/yr since ~1.5-2.0 Ma, which is consistent with the exposure of reset zircons beneath the surfaces. Erosion rates of this magnitude, however, are expected to produce significant topographic relief, making it difficult to generate a topographic surface of low slope and low relief centered on the ridge crest. Very young ApFT and ZrnHe ages (e.g., < 0.5 Ma) also suggest a more recent acceleration in exhumation cooling. A relatively large area of low relief centered on the top of the submarine accretionary prism south of Taiwan may provide a solution for this conundrum. The area covers ca 1000 km2, has a mean elevation of ca 450 m below sea level and appears to be composed of hard, intact rocks rather than unlithified deep sea muds. Several attempts at gravity and piston coring failed to penetrate the substrate and samples retrieved in the core catcher include rounded clasts of quartz and siltstone. Geophysical studies also show high Vp velocities at relatively shallow depths beneath the sea floor, suggesting the removal of a significant volume of sediment and rock, presumably through erosion. We propose that this low relief plateau serves as a modern analog for the formation of the low relief surfaces that currently straddle the ridge crest in Taiwan. If this interpretation is correct, it suggests a tectonic model in which submarine erosion processes modulate vertical growth of the prism until collision of thick continental crust promotes uplift that outpaces erosion. This requires significant erosion rates (e.g., mm/yr) in the shallow water marine environment. Based on the young ApFT and ZrnHe ages, we propose that emergence of the prism occurred less than about a half a million years ago, and that this hypothesis could be tested by chronologic and thermochronologic data from cores retrieved through submarine drilling.

Topographic mapping of electroencephalography coherence in hypnagogic state.

PubMed

Tanaka, H; Hayashi, M; Hori, T

1998-04-01

The present study examined the topographic characteristics of hypnagogic electroencephalography (EEG), using topographic mapping of EEG power and coherence corresponding to nine EEG stages (Hori's hypnagogic EEG stages). EEG stages 1 and 2, the EEG stages 3-8, and the EEG stage 9 each correspond with standard sleep stage W, 1 and 2, respectively. The dominant topographic components of delta and theta activities increased clearly from the vertex sharp-wave stage (the EEG stages 6 and 7) in the anterior-central areas. The dominant topographic component of alpha 3 activities increased clearly from the EEG stage 9 in the anterior-central areas. The dominant topographic component of sigma activities increased clearly from the EEG stage 8 in the central-parietal area. These results suggested basic sleep process might start before the onset of sleep stage 2 or of the manually scored spindles.

The formation and distribution of hippocampal synapses on patterned neuronal networks

NASA Astrophysics Data System (ADS)

Dowell-Mesfin, Natalie M.

Communication within the central nervous system is highly orchestrated with neurons forming trillions of specialized junctions called synapses. In vivo, biochemical and topographical cues can regulate neuronal growth. Biochemical cues also influence synaptogenesis and synaptic plasticity. The effects of topography on the development of synapses have been less studied. In vitro, neuronal growth is unorganized and complex making it difficult to study the development of networks. Patterned topographical cues guide and control the growth of neuronal processes (axons and dendrites) into organized networks. The aim of this dissertation was to determine if patterned topographical cues can influence synapse formation and distribution. Standard fabrication and compression molding procedures were used to produce silicon masters and polystyrene replicas with topographical cues presented as 1 mum high pillars with diameters of 0.5 and 2.0 mum and gaps of 1.0 to 5.0 mum. Embryonic rat hippocampal neurons grown unto patterned surfaces. A developmental analysis with immunocytochemistry was used to assess the distribution of pre- and post-synaptic proteins. Activity-dependent pre-synaptic vesicle uptake using functional imaging dyes was also performed. Adaptive filtering computer algorithms identified synapses by segmenting juxtaposed pairs of pre- and post-synaptic labels. Synapse number and area were automatically extracted from each deconvolved data set. In addition, neuronal processes were traced automatically to assess changes in synapse distribution. The results of these experiments demonstrated that patterned topographic cues can induce organized and functional neuronal networks that can serve as models for the study of synapse formation and plasticity as well as for the development of neuroprosthetic devices.

Landscape heterogeneity modulates forest sensitivity to climate

NASA Astrophysics Data System (ADS)

Jencso, Kelsey; Hu, Jia; Hoylman, Zachary

2015-04-01

Elevation dependent snowmelt magnitude and timing strongly influences net ecosystem productivity in forested mountain watersheds. However, previous work has provided little insight into how internal watershed topography and organization may modulate plant available water and forest growth across elevation gradients. We collected 800 tree cores from four coniferous tree species across a range of elevation, topographic positions and aspects in the Lubrecht Experimental Forest, Montana, USA. We compared the annual basal area increment growth rate to precipitation and temperature from a 60-year SNOTEL data record, groundwater and soil moisture data in sideslope and hollow positions, and topographic indices derived from a LiDAR digital elevation model. At the watershed scale, we evaluated the relationships between topographic indices, LiDAR derived estimates of basal area and seasonal patterns of the Landsat derived Enhanced Vegetation Index. Preliminary results indicate strong relationships between the rates of annual basal growth and the topographic wetness index (TWI), with differing slopes dependent on tree species (P. menziesii R2 = 0.66-0.71, P. ponderosa R2 = 0.87, L. occidentalis R2 = 0.71) and elevation. Generally, trees located in wetter landscape positions (higher TWI) exhibited greater annual growth per unit of precipitation relative to trees located in drier landscape positions (lower TWI). Similarly, watershed scale analysis of LiDAR derived biomass and seasonal greenness indicates differential growth response due to local convergence and divergence across elevation and insolation gradients. These observations suggest that topographically driven water redistribution patterns may modulate the effects of large scale gradients in precipitation and temperature, thereby creating hotspots for conifer productivity in semiarid watersheds.

Landscape Heterogeneity Modulates Forest Sensitivity to Climate

NASA Astrophysics Data System (ADS)

Hoylman, Z. H.; Jencso, K. G.; Hu, J.; Running, S. W.

2014-12-01

Elevation dependent snowmelt magnitude and timing strongly influences net ecosystem productivity in forested mountain watersheds. However, previous work has provided little insight into how internal watershed topography and organization may modulate plant available water and forest growth across elevation gradients. We collected 800 tree cores from five coniferous tree species across a range of elevations, topographic positions and aspects in the Lubrecht Experimental Forest, Montana, USA. We compared the annual basal area increment growth rate to precipitation and temperature from a 60-year SNOTEL data record, groundwater and soil moisture data in sideslope and hollow positions, and topographic indices derived from a LiDAR digital elevation model. At the watershed scale, we evaluated the relationships between topographic indices, LiDAR derived estimates of basal area and seasonal patterns of the Landsat derived Enhanced Vegetation Index. Preliminary results indicate strong relationships between the rates of annual basal growth and the topographic wetness index (TWI) , with differing slopes dependent on tree species (P. menziesii R2 = 0.66-0.71, P. ponderosa R2 = 0.87, L. occidentalis R2 = 0.71) and elevation. Generally, trees located in wetter landscape positions (higher TWI) exhibited greater annual growth per unit of precipitation relative to trees located in drier landscape positions (lower TWI). Watershed scale analysis of LiDAR derived biomass and seasonal greenness indicates differential growth response due to elevation gradients, irradiance and local convergence and divergence. These preliminary observations suggest that topographically driven water redistribution patterns may modulate the effects of large scale gradients in precipitation and temperature, thereby creating hotspots for conifer productivity in semiarid watersheds.

Topography of the overriding plate during progressive subduction: A dynamic model to explain forearc subsidence

NASA Astrophysics Data System (ADS)

Chen, Z.; Schellart, W. P.; Duarte, J. C.; Strak, V.

2017-12-01

Topography that forms at the free top surface of the lithosphere contains important information about the dynamics of the tectonic plates and the sub-lithospheric mantle. Investigating topography around subduction zones can provide quantitative and conceptual insights into the interaction between the plates, the slabs, mantle flow, and the associated stresses. To achieve this, geodynamic modelling can be an effective tool. In this study, we used techniques of stereoscopic photogrammetry and Particle Image Velocimetry to monitor simultaneously the topography of the overriding plate and the velocity field of the subduction-induced mantle flow occurring in the mantle wedge. Model results show that the overriding plate topography is characterized by an area of forearc topographic subsidence, with a magnitude scaling to 1.44-3.97 km in nature, and a transient local topographic high located between the forearc depression and the trench. These topographic features rapidly develop during the slab sinking phase and gradually decrease during the slab rollback phase. We propose that these topographic transient features predominantly result from the variation of the vertical component of the trench suction along the subduction zone interface, which is minimum near the trench and maximum near the tip of the mantle wedge and is caused by the gradual slab steepening during the initial transient slab sinking phase. The downward mantle flow in the nose of the mantle wedge plays a minor role in the formation of the forearc subsidence. Our findings provide a new mechanism for the formation of forearc topographic subsidence, which has been commonly observed at natural subduction zones.

Analysis of the role of diffraction in topographic site effects using boundary element techniques

NASA Astrophysics Data System (ADS)

Gomez, Juan; Restrepo, Doriam; Jaramillo, Juan; Valencia, Camilo

2013-10-01

The role played by the diffraction field on the problem of seismic site effects is studied. For that purpose we solve and analyze simple scattering problems under P and SV in-plane wave assumptions, using two well known direct boundary-element-based numerical methods. After establishing the difference between scattered and diffracted motions, and introducing the concept of artificious and physically based incoming fields, we obtain the amplitude of the Fourier spectra for the diffracted part of the response: this is achieved after establishing the connection between the spatial distribution of the transfer function over the studied simple topographies and the diffracted field. From the numerical simulations it is observed that this diffracted part of the response is responsible for the amplification of the surface ground motions due to the geometric effect. Furthermore, it is also found that the diffraction field sets in a fingerprint of the topographic effect in the total ground motions. These conclusions are further supported by observations in the time-domain in terms of snapshots of the propagation patterns over the complete computational model. In this sense the geometric singularities are clearly identified as sources of diffraction and for the considered range of dimensionless frequencies it is evident that larger amplifications are obtained for the geometries containing a larger number of diffraction sources thus resulting in a stronger topographic effect. The need for closed-form solutions of canonical problems to construct a robust analysis method based on the diffraction field is identified.

Mosaic of Digital Raster Soviet Topographic Maps of Afghanistan

USGS Publications Warehouse

Chirico, Peter G.; Warner, Michael B.

2005-01-01

EXPLANATION The data contained in this publication include scanned, geographically referenced digital raster graphics (DRGs) of Soviet 1:200,000 - scale topographic map quadrangles. The original Afghanistan topographic map series at 1:200,000 scale, for the entire country, was published by the Soviet military between 1985 and 1991(MTDGS, 85-91). Hard copies of these original paper maps were scanned using a large format scanner, reprojected into Geographic Coordinate System (GCS) coordinates, and then clipped to remove the map collars to create a seamless, topographic map base for the entire country. An index of all available topographic map sheets is displayed here: Index_Geo_DD.pdf. This publication also includes the originial topographic map quadrangles projected in Universal Transverse Mercator (UTM) projection. The country of Afghanistan spans three UTM Zones: Zone 41, Zone 42, and Zone 43. Maps are stored as GeoTIFFs in their respective UTM zone projection. Indexes of all available topographic map sheets in their respective UTM zone are displayed here: Index_UTM_Z41.pdf, Index_UTM_Z42.pdf, Index_UTM_Z43.pdf. An Adobe Acrobat PDF file of the U.S. Department of the Army's Technical Manual 30-548, is available (U.S. Army, 1958). This document has been translated into English for assistance in reading Soviet topographic map symbols.

Testing the role of bedforms as controls on the morphodynamics of sandy braided rivers with CFD

NASA Astrophysics Data System (ADS)

Unsworth, C. A.; Nicholas, A. P.; Ashworth, P. J.; Best, J.; Lane, S. N.; Parsons, D. R.; Sambrook Smith, G.; Simpson, C.; Strick, R. J. P.

2017-12-01

Sand-bed rivers are characterised by multiple scales of topography (e.g., channels, bars and bedforms). Small scale topographic features (e.g., dunes) exert a significant influence on coherent flow structures and sediment transport processes, over distances that scale with channel depth. However, the extent to which such dune-scale effects control larger, channel and bar-scale morphology and morphodynamics remains unknown. Moreover, such bedform effects are typically neglected in two-dimensional (depth-averaged) morphodynamic models that are used to simulate river evolution. To evaluate the significance of these issues, we report results from a combined numerical modelling and field monitoring study, undertaken in the South Saskatchewan River, Canada. Numerical simulations were carried out, using the OpenFOAM CFD code, to quantify the mean three-dimensional flow structure within a 90 x 350 m section of channel. To isolate the role of bedforms as a control on flow and sediment transport, two simulations were undertaken. The first used a high-resolution ( 3 cm) bedform-resolving DEM. The second used a filtered DEM in which dunes were removed and only large scale topographic features (e.g., bars, scour pools etc) were resolved. The results of these simulations are compared here, in order to quantify the degree to which topographic steering by bedforms influences flow and sediment transport directions at bar and channel scales. Analysis of the CFD simulation results within a 2D morphodynamic modelling framework demonstrates that dunes exert a significant influence on sediment transport, and hence morphodynamics, and highlights important shortcomings in existing 2D model parameterisations of topographic steering.

Effects of topographic data quality on estimates of shallow slope stability using different regolith depth models

USGS Publications Warehouse

Baum, Rex L.

2017-01-01

Thickness of colluvium or regolith overlying bedrock or other consolidated materials is a major factor in determining stability of unconsolidated earth materials on steep slopes. Many efforts to model spatially distributed slope stability, for example to assess susceptibility to shallow landslides, have relied on estimates of constant thickness, constant depth, or simple models of thickness (or depth) based on slope and other topographic variables. Assumptions of constant depth or thickness rarely give satisfactory results. Geomorphologists have devised a number of different models to represent the spatial variability of regolith depth and applied them to various settings. I have applied some of these models that can be implemented numerically to different study areas with different types of terrain and tested the results against available depth measurements and landslide inventories. The areas include crystalline rocks of the Colorado Front Range, and gently dipping sedimentary rocks of the Oregon Coast Range. Model performance varies with model, terrain type, and with quality of the input topographic data. Steps in contour-derived 10-m digital elevation models (DEMs) introduce significant errors into the predicted distribution of regolith and landslides. Scan lines, facets, and other artifacts further degrade DEMs and model predictions. Resampling to a lower grid-cell resolution can mitigate effects of facets in lidar DEMs of areas where dense forest severely limits ground returns. Due to its higher accuracy and ability to penetrate vegetation, lidar-derived topography produces more realistic distributions of cover and potential landslides than conventional photogrammetrically derived topographic data.

Topographical memory for newly-learned maps is differentially affected by route-based versus landmark-based learning: a functional MRI study.

PubMed

Beatty, Erin L; Muller-Gass, Alexandra; Wojtarowicz, Dorothy; Jobidon, Marie-Eve; Smith, Ingrid; Lam, Quan; Vartanian, Oshin

2018-04-11

Humans rely on topographical memory to encode information about spatial aspects of environments. However, even though people adopt different strategies when learning new maps, little is known about the impact of those strategies on topographical memory, and their neural correlates. To examine that issue, we presented participants with 40 unfamiliar maps, each of which displayed one major route and three landmarks. Half were instructed to memorize the maps by focusing on the route, whereas the other half memorized the maps by focusing on the landmarks. One day later, the participants were tested on their ability to distinguish previously studied 'old' maps from completely unfamiliar 'new' maps under conditions of high and low working memory load in the functional MRI scanner. Viewing old versus new maps was associated with relatively greater activation in a distributed set of regions including bilateral inferior temporal gyrus - an important region for recognizing visual objects. Critically, whereas the performance of participants who had followed a route-based strategy dropped to chance level under high working memory load, participants who had followed a landmark-based strategy performed at above chance levels under both high and low working memory load - reflected by relatively greater activation in the left inferior parietal lobule (i.e. rostral part of the supramarginal gyrus known as area PFt). Our findings suggest that landmark-based learning may buffer against the effects of working memory load during recognition, and that this effect is represented by the greater involvement of a brain region implicated in both topographical and working memory.

Biodiversity and Topographic Complexity: Modern and Geohistorical Perspectives

PubMed Central

Badgley, Catherine; Smiley, Tara M.; Terry, Rebecca; Davis, Edward B.; DeSantis, Larisa R.G.; Fox, David L.; Hopkins, Samantha S.B.; Jezkova, Tereza; Matocq, Marjorie D.; Matzke, Nick; McGuire, Jenny L.; Mulch, Andreas; Riddle, Brett R.; Roth, V. Louise; Samuels, Joshua X.; Strömberg, Caroline A.E.; Yanites, Brian J.

2018-01-01

Topographically complex regions on land and in the oceans feature hotspots of biodiversity that reflect geological influences on ecological and evolutionary processes. Over geologic time, topographic diversity gradients wax and wane over millions of years, tracking tectonic or climatic history. Topographic diversity gradients from the present day and the past can result from the generation of species by vicariance or from the accumulation of species from dispersal into a region with strong environmental gradients. Biological and geological approaches must be integrated to test alternative models of diversification along topographic gradients. Reciprocal illumination among phylogenetic, phylogeographic, ecological, paleontological, tectonic, and climatic perspectives is an emerging frontier of biogeographic research. PMID:28196688

Role of Hemidivisional Corneal Topographic Astigmatisms (CorTs) in the Regularization and Reduction of Irregular Astigmatism.

PubMed

Alpins, Noel; Ong, James K Y; Stamatelatos, George

2018-03-01

To demonstrate how the concept of hemidivisional corneal topographic astigmatism (hemiCorT) enables the planning of hemidivisional corneal treatments to reduce irregularity and overall astigmatism. Whole-of-cornea corneal topographic astigmatism (CorT) is calculated from topography data derived from a corneal topographer or tomographer. The cornea is conceptually divided into 2 hemidivisions along the flat meridian of the CorT. For each hemidivision, hemiCorTs are calculated. The regularization treatment for each hemidivision is the treatment required to target the whole-of-cornea CorT, which is a symmetrical orthogonal corneal astigmatism. The regularization is then combined with astigmatism reduction treatment, which could be a conventional refractive treatment or a vector-planned treatment. For each hemidivision, the combined astigmatic effect of the regularization treatment and reduction treatment can be determined through double-angle vector summation. The 2 hemidivisional treatments together regularize and reduce corneal astigmatism. A theoretical pair of hemidivisional treatments is derived from an actual example of a cornea displaying idiopathic asymmetric nonorthogonal astigmatism. HemiCorTs allow for the design of hemidivisional corneal treatments of asymmetric nonorthogonal astigmatism. Such treatments should be suitable in the routine treatment of commonly occurring irregular astigmatism, while also allowing the spherical refractive error to be treated concurrently.

LASIK for Spherical Refractive Myopia: Effect of Topographic Astigmatism (Ocular Residual Astigmatism, ORA) on Refractive Outcome

PubMed Central

Frings, Andreas; Richard, Gisbert; Steinberg, Johannes; Skevas, Christos; Druchkiv, Vasyl; Katz, Toam; Linke, Stephan J.

2015-01-01

Purpose In eyes with a preoperative plano refractive cylinder, it would appear that there is no rationale for astigmatic treatment. The aim of this retrospective, cross-sectional data analysis was to determine the amount of topographic astigmatism in refractive plano eyes that results in reduced efficacy after myopic laser in situ keratomileusis (LASIK). Methods This study included 267 eyes from 267 consecutive myopic patients with a refractive plano cylinder. Receiver operating characteristic analysis was used to find the cut-off values of preoperative ocular residual astigmatism (= topographic astigmatism) that can best discriminate between groups of efficacy and safety indices in preoperative plano refractive cylinder eyes. Results Preoperative ocular residual astigmatism (ORA) (or topographic astigmatism) of ≤0.9 diopters (D) resulted in an efficacy index of at least 0.8 statistically significantly more frequently than eyes with a preoperative ORA of >0.9 D. Eyes with a high ORA preoperatively also had a high ORA postoperatively. Regression analysis showed that each diopter of preoperative ORA reduced efficacy by 0.07. Conclusion A preoperative corneal astigmatism of ≥0.9 D could (partially) be taken into account in the LASIK design, even if the subjective refractive astigmatism is neutral. PMID:25875476

Assessing critical source areas in watersheds for conservation buffer planning and riparian restoration.

PubMed

Qiu, Zeyuan

2009-11-01

A science-based geographic information system (GIS) approach is presented to target critical source areas in watersheds for conservation buffer placement. Critical source areas are the intersection of hydrologically sensitive areas and pollutant source areas in watersheds. Hydrologically sensitive areas are areas that actively generate runoff in the watershed and are derived using a modified topographic index approach based on variable source area hydrology. Pollutant source areas are the areas in watersheds that are actively and intensively used for such activities as agricultural production. The method is applied to the Neshanic River watershed in Hunterdon County, New Jersey. The capacity of the topographic index in predicting the spatial pattern of runoff generation and the runoff contribution to stream flow in the watershed is evaluated. A simple cost-effectiveness assessment is conducted to compare the conservation buffer placement scenario based on this GIS method to conventional riparian buffer scenarios for placing conservation buffers in agricultural lands in the watershed. The results show that the topographic index reasonably predicts the runoff generation in the watershed. The GIS-based conservation buffer scenario appears to be more cost-effective than the conventional riparian buffer scenarios.

The effects of solar incidence angle over digital processing of LANDSAT data

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Novo, E. M. L. M.

1983-01-01

A technique to extract the topography modulation component from digital data is described. The enhancement process is based on the fact that the pixel contains two types of information: (1) reflectance variation due to the target; (2) reflectance variation due to the topography. In order to enhance the signal variation due to topography, the technique recommends the extraction from original LANDSAT data of the component resulting from target reflectance. Considering that the role of topographic modulation over the pixel information will vary with solar incidence angle, the results of this technique of digital processing will differ from one season to another, mainly in highly dissected topography. In this context, the effects of solar incidence angle over the topographic modulation technique were evaluated. Two sets of MSS/LANDSAT data, with solar elevation angles varying from 22 to 41 deg were selected to implement the digital processing at the Image-100 System. A secondary watershed (Rio Bocaina) draining into Rio Paraiba do Sul (Sao Paulo State) was selected as a test site. The results showed that the technique used was more appropriate to MSS data acquired under higher Sun elevation angles. Topographic modulation components applied to low Sun elevation angles lessens rather than enhances topography.

Topographic Signatures in Aquarius Radiometer/Scatterometer Response: Initial Results

NASA Technical Reports Server (NTRS)

Utku, C.; LeVine, D. M.

2012-01-01

The effect of topography on remote sensing at L-band is examined using the co-located Aquarius radiometer and scatterometer observations over land. A correlation with slope standard deviation is demonstrated for both the radiometer and scatterometer at topographic scales. Although the goal of Aquarius is remote sensing of sea surface salinity, the radiometer and scatterometer are on continuously and collect data for remote sensing research over land. Research is reported here using the data over land to determine if topography could have impact on the passive remote sensing at L-band. In this study, we report observations from two study regions: North Africa between 15 deg and 30 deg Northern latitudes and Australia less the Tasmania Island. Common to these two regions are the semi-arid climate and low population density; both favorable conditions to isolate the effect of topography from other sources of scatter and emission such as vegetation and urban areas. Over these study regions, topographic scale slopes within each Aquarius pixel are computed and their standard deviations are compared with Aquarius scatterometer and radiometer observations over a 36 day period between days 275 and 311 of 2011.

A topographic feature taxonomy for a U.S. national topographic mapping ontology

USGS Publications Warehouse

Varanka, Dalia E.

2013-01-01

Using legacy feature lists from the U.S. National Topographic Mapping Program of the twentieth century, a taxonomy of features is presented for purposes of developing a national topographic feature ontology for geographic mapping and analysis. After reviewing published taxonomic classifications, six basic classes are suggested; terrain, surface water, ecological regimes, built-up areas, divisions, and events. Aspects of ontology development are suggested as the taxonomy is described.

Photodegradable, Photoadaptable Hydrogels via Radical-Mediated Disulfide Fragmentation Reaction.

PubMed

Fairbanks, Benjamin D; Singh, Samir P; Bowman, Christopher N; Anseth, Kristi S

2011-04-26

Various techniques have been adopted to impart a biological responsiveness to synthetic hydrogels for the delivery of therapeutic agents as well as the study and manipulation of biological processes and tissue development. Such techniques and materials include polyelectrolyte gels that swell and deswell with changes in pH, thermosensitive gels that contract at physiological temperatures, and peptide cross-linked hydrogels that degrade upon peptidolysis by cell-secreted enzymes. Herein we report a unique approach to photochemically deform and degrade disulfide cross-linked hydrogels, mitigating the challenges of light attenuation and low quantum yield, permitting the degradation of hydrogels up to 2 mm thick within 120 s at low light intensities (10 mW/cm(2) at 365 nm). Hydrogels were formed by the oxidation of thiol-functionalized 4-armed poly(ethylene glycol) macromolecules. These disulfide cross-linked hydrogels were then swollen in a lithium acylphosphinate photoinitiator solution. Upon exposure to light, photogenerated radicals initiate multiple fragmentation and disulfide exchange reactions, permitting and promoting photodeformation, photowelding, and photodegradation. This novel, but simple, approach to generate photoadaptable hydrogels portends the study of cellular response to mechanically and topographically dynamic substrates as well as novel encapsulations by the welding of solid substrates. The principles and techniques described herein hold implications for more than hydrogel materials but also for photoadaptable polymers more generally.

Visual spatial attention enhances the amplitude of positive and negative fMRI responses to visual stimulation in an eccentricity-dependent manner

PubMed Central

Bressler, David W.; Fortenbaugh, Francesca C.; Robertson, Lynn C.; Silver, Michael A.

2013-01-01

Endogenous visual spatial attention improves perception and enhances neural responses to visual stimuli at attended locations. Although many aspects of visual processing differ significantly between central and peripheral vision, little is known regarding the neural substrates of the eccentricity dependence of spatial attention effects. We measured amplitudes of positive and negative fMRI responses to visual stimuli as a function of eccentricity in a large number of topographically-organized cortical areas. Responses to each stimulus were obtained when the stimulus was attended and when spatial attention was directed to a stimulus in the opposite visual hemifield. Attending to the stimulus increased both positive and negative response amplitudes in all cortical areas we studied: V1, V2, V3, hV4, VO1, LO1, LO2, V3A/B, IPS0, TO1, and TO2. However, the eccentricity dependence of these effects differed considerably across cortical areas. In early visual, ventral, and lateral occipital cortex, attentional enhancement of positive responses was greater for central compared to peripheral eccentricities. The opposite pattern was observed in dorsal stream areas IPS0 and putative MT homolog TO1, where attentional enhancement of positive responses was greater in the periphery. Both the magnitude and the eccentricity dependence of attentional modulation of negative fMRI responses closely mirrored that of positive responses across cortical areas. PMID:23562388

Soil physical, chemical and gas-flux characterization from Picea mariana stands near Erickson Creek, Alaska

USGS Publications Warehouse

O'Donnell, Jonathan A.; Harden, Jennifer W.; Manies, Kristen L.

2011-01-01

Fire is a particularly important control on the carbon (C) balance of the boreal forest, and fire-return intervals and fire severity appear to have increased since the late 1900s in North America. In addition to the immediate release of stored C to the atmosphere through organic-matter combustion, fire also modifies soil conditions, possibly affecting C exchange between terrestrial and atmospheric pools for decades after the burn. The effects of fire on ecosystem C dynamics vary across the landscape, with topographic position and soil drainage functioning as important controls. The data reported here contributed to a larger U.S. Geological Survey (USGS) study, published in the journal Ecosystems by O'Donnell and others (2009). To evaluate the effects of fire and drainage on ecosystem C dynamics, we selected sample sites within the 2003 Erickson Creek fire scar to measure CO2 fluxes and soil C inventories in burned and unburned (control) sites in both upland and lowland black spruce (Picea mariana) forests. The results of this study suggested that although fire can create soil climate conditions which are more conducive to rapid decomposition, rates of C release from soils may be constrained after fire by changes in moisture and (or) substrate quality that impede rates of decomposition. Here, we report detailed site information, methodology, and data (in spreadsheet files) from that study.

Biodiversity and Topographic Complexity: Modern and Geohistorical Perspectives.

PubMed

Badgley, Catherine; Smiley, Tara M; Terry, Rebecca; Davis, Edward B; DeSantis, Larisa R G; Fox, David L; Hopkins, Samantha S B; Jezkova, Tereza; Matocq, Marjorie D; Matzke, Nick; McGuire, Jenny L; Mulch, Andreas; Riddle, Brett R; Roth, V Louise; Samuels, Joshua X; Strömberg, Caroline A E; Yanites, Brian J

2017-03-01

Topographically complex regions on land and in the oceans feature hotspots of biodiversity that reflect geological influences on ecological and evolutionary processes. Over geologic time, topographic diversity gradients wax and wane over millions of years, tracking tectonic or climatic history. Topographic diversity gradients from the present day and the past can result from the generation of species by vicariance or from the accumulation of species from dispersal into a region with strong environmental gradients. Biological and geological approaches must be integrated to test alternative models of diversification along topographic gradients. Reciprocal illumination among phylogenetic, phylogeographic, ecological, paleontological, tectonic, and climatic perspectives is an emerging frontier of biogeographic research. Copyright © 2017 Elsevier Ltd. All rights reserved.

Topographic mapping

USGS Publications Warehouse

,

2008-01-01

The U.S. Geological Survey (USGS) produced its first topographic map in 1879, the same year it was established. Today, more than 100 years and millions of map copies later, topographic mapping is still a central activity for the USGS. The topographic map remains an indispensable tool for government, science, industry, and leisure. Much has changed since early topographers traveled the unsettled West and carefully plotted the first USGS maps by hand. Advances in survey techniques, instrumentation, and design and printing technologies, as well as the use of aerial photography and satellite data, have dramatically improved mapping coverage, accuracy, and efficiency. Yet cartography, the art and science of mapping, may never before have undergone change more profound than today.

A Topographic Field Trip of Washington, D.C. - A Cartographic Multimedia Application

USGS Publications Warehouse

,

1999-01-01

The U.S. Geological Survey (USGS) has produced ?A Topographic Field Trip of Washington, D.C.,' a multimedia CD-ROM that uses topographic maps to tour Washington, D.C. Although designed for the middle school grade level, it can also be used to teach introductory topographic map reading skills to any level. Two versions of ?A Topographic Field Trip of Washington, D.C.,? are available. The first version, for Macintosh? systems only, was developed and produced as a prototype with educational resources funds and is available free of charge. The second version, for dual platforms, Macintosh?, and Windows? systems, is a sales item. The dual platform version contains improvements in content and navigational capabilities.

Lessons Learned from the Advanced Topographic Laser Altimeter System

NASA Technical Reports Server (NTRS)

Garrison, Matt; Patel, Deepak; Bradshaw, Heather; Robinson, Frank; Neuberger, Dave

2016-01-01

The ICESat-2 Advanced Topographic Laser Altimeter System (ATLAS) instrument is an upcoming Earth Science mission focusing on the effects of climate change. The flight instrument passed all environmental testing at GSFC (Goddard Space Flight Center) and is now ready to be shipped to the spacecraft vendor for integration and testing. This presentation walks through the lessons learned from design, hardware, analysis and testing perspective. ATLAS lessons learned include general thermal design, analysis, hardware, and testing issues as well as lessons specific to laser systems, two-phase thermal control, and optical assemblies with precision alignment requirements.

Resolving Topographic Changes at Volcanoes Using Pleiades-1 Tri-stereo Imagery and Other Methods: the Example of Fogo Volcano.

NASA Astrophysics Data System (ADS)

Bagnardi, M.; González, P. J.; Hooper, A. J.; Richter, N.; Walter, T. R.

2016-12-01

Precise, quantitative analyses of topographic changes associated with the emplacement of volcanic products provide the means to infer key parameters for the assessment of hazards associated with volcanic processes. Different techniques can be applied to generate high-resolution digital elevation models (DEMs), using both ground-based and air/space-borne sensors. In this study, we first evaluate the use of very high resolution (VHR) tri-stereo optical imagery from the Pleiades-1 satellite constellation for volcanological applications. With this scope, we generate a 1 m resolution DEM of Fogo Volcano, Cape Verde, and use this DEM to quantify topographic changes associated with the 2014-2015 eruption. We observe that, when compared with the classic stereo approach, the use of tri-stereo imagery highly enhances the ability of photogrammetric techniques to estimate heights through increasing the point cloud density and by reducing the number of pixels with no measurements. From the Pleiades-1 post-eruption topography we subtract heights from a pre-eruptive DEM, obtained using spaceborne synthetic aperture radar (SAR) data from the TanDEM-X mission, and estimate the volume of the 2014-2015 lava flow ( 46 million m3) and the mean output rate throughout the eruption (5-7 m3/s). We subsequently use complementary datasets from a variety of sensors (Terrestrial Laser Scanning, UAV optical imagery, Structure from Motion from hand-held DSLR cameras) to fill gaps in Pleiades-1 data coverage and to generate a merged, high-resolution DEM of the volcano. To weight the contribution of each dataset, we carry out a comparative analysis of the accuracy of the different DEMs and identify advantages and disadvantages associated with the use of each technique. Finally, using SAR data acquired by the Sentinel-1a satellite, we apply SAR interferometry (InSAR) and measure the lava flow subsidence due to cooling and contraction in the months after its emplacement and compare this to the measured lava flow thickness. Maximum subsidence is recorded in those areas where lava flow thickness is also maximum, and where the substrate onto which the lava flow was emplaced is highly compactable.

[Analysis of effect of topographical conditions on content of total alkaloid in Coptidis Rhizoma in Chongqin, China].

PubMed

Liu, Xin; Huang, He; Yang, Yan-fang; Wu, He-zhen

2014-12-01

To study ecology suitability rank dividing of the total alkaloid content of Coptis Rhizoma for selecting artificial planting base and high-quality industrial raw material in Chongqing province. Based on the investigation of PCB and DEM data of Chongqing province, the relationship between the total alkaloid content in Coptis Rhizoma and topographical conditions was analyzed by statistical analysis. The geographic information systems (GIS)-based assessment and landscape ecological principles were applied to assess eco logy suitability areas of Coptis Rhizoma in Chongqing. slope, aspect and altitude are main topographical factors that affect the content of the total alkaloid content in Coptis Rhizoma The total alkaloid content in Coptis Rhizoma is higher in the lower altitude, shady slope and bigger slope areas. The total alkaloid content is higher in the south areas of Chongqing province and lower in the northeast. Terrain conditions of the southern region of Chongqing are most suitable for The accumulated of total alkaloid Coptis Rhizoma content.

Geomorphic field experiment to quantify grain size and biotic influence on riverbed sedimentation dynamics in a dry-season reservoir, Russian River, CA

NASA Astrophysics Data System (ADS)

Florsheim, J. L.; Ulrich, C.; Hubbard, S. S.; Borglin, S. E.; Rosenberry, D. O.

2013-12-01

An important problem in geomorphology is to differentiate between abiotic and biotic fine sediment deposition on coarse gravel river beds because of the potential for fine sediment to infiltrate and clog the pore space between gravel clasts. Infiltration of fines into gravel substrate is significant because it may reduce permeability; therefore, differentiation of abiotic vs. biotic sediment helps in understanding the causes of such changes. We conducted a geomorphic field experiment during May to November 2012 in the Russian River near Wohler, CA, to quantify biotic influence on riverbed sedimentation in a small temporary reservoir. The reservoir is formed upstream of a small dam inflated during the dry season to enhance water supply pumping from the aquifer below the channel; however, some flow is maintained in the reservoir to facilitate fish outmigration. In the Russian River field area, sediment transport dynamics during storm flows prior to dam inflation created an alternate bar-riffle complex with a coarser gravel surface layer over the relatively finer gravel subsurface. The objective of our work was to link grain size distribution and topographic variation to biotic and abiotic sediment deposition dynamics in this field setting where the summertime dam annually increases flow depth and inundates the bar surfaces. The field experiment investigated fine sediment deposition over the coarser surface sediment on two impounded bars upstream of the reservoir during an approximately five month period when the temporary dam was inflated. The approach included high resolution field surveys of topography, grain size sampling and sediment traps on channel bars, and laboratory analyses of grain size distributions and loss on ignition (LOI) to determine biotic content. Sediment traps were installed at six sites on bars to measure sediment deposited during the period of impoundment. Preliminary results show that fine sediment deposition occurred at all of the sample sites, and is spatially variable--likely influenced by topographic differences that moderate flow over the bars. Traps initially filled with coarse gravel from the bar's surface trapped more fine sediment than traps initially filled with material from the bar's subsurface sediment, suggesting that a gravel bar's armor layer may enhance the source of material available to infiltrate into the channel substrate. LOI analysis indicates that both surface and subsurface samples have organic content ranging between 2 and 4%, following winter storm flows prior to impoundment. In contrast, samples collected after the 5-month impoundment have higher organic content ranging between 5 and 11%. This work aids in differentiating between abiotic and biotic fine sediment deposition in order to understand their relative potential for clogging gravel substrate.

Using UAV photogrammetry to study topographic change: application to Saskatchewan Glacier, Alberta, Canada

NASA Astrophysics Data System (ADS)

Meunier Cardinal, G.; Demuth, M. N.; Kinnard, C.

2016-12-01

Glaciers are an important source of fresh water in the headwaters of the Canadian Rocky Mountains, and ongoing climate warming could reduce their future hydrological contribution. Unmanned Aerial Vehicles UAVs) are an emergent technology that allow studying glacial processes with an unprecedented level of detail, but their usefulness for deriving accurate topographic data on glaciers has not yet been fully assessed. In this perspective we tested the use of a UAV platform to acquire images at a very high spatial resolution (<10cm) in order to estimate topographical and dynamic changes over a one year period on the ablation zone of Saskatchewan glacier, the main outlet of the Columbia Icefield in Alberta, Canada (52°06N, 117°15W). Two data acquisition campaigns were carried out, in August 2014 and 2015. Orthomosaics and digital elevation models (DEMs) with a high spatial resolution (<10cm) were produced for each year, using the Structure from Motion (SfM) algorithm. A detailed assessment of DEM errors was performed by cross-validation of an network of ground control points (GCPs) deployed on the glacier surface. The influence of checkpoint position in the network, border effects, number of photos calibrated and GPS accuracy were examined. Topographical changes were measured from the DEM difference and surface displacements estimated by applying feature tracking techniques to the orthomosaics. Further, the dominant scales of topographic spatial variability were examined using a semivariogram analysis of the DEMs. Results show that UAV-based photogrammetry is promising to further our understanding of high-resolution glacier surface processes and to perform repeat, on-demand monitoring of glacier changes, but their application on remote glaciers remains challenging.

A novel Hartman Shack-based topography system: repeatability and agreement for corneal power with Scheimpflug+Placido topographer and rotating prism auto-keratorefractor.

PubMed

Prakash, Gaurav; Srivastava, Dhruv; Choudhuri, Sounak

2015-12-01

The purpose of this study is to analyze the repeatability and agreement of corneal power using a new Hartman type topographer in comparison to Scheimpflug+Placido and autorefractor devices. In this cross sectional, observational study performed at the cornea services of a specialty hospital, 100 normal eyes (100 consecutive candidates) without any previous ocular surgery or morbidity except refractive error were evaluated. All candidates underwent three measurements each on a Full gradient, Hartman type topographer (FG) (iDesign, AMO), Scheimpflug+Placido topographer (SP) (Sirius, CSO) and rotating prism auto-keratorefractor (AR) (KR1, Nidek). The parameters assessed were flat keratometry (K1), steep keratometry (K2), steep axis (K2 axis), mean K, J 0 and J 45. Intra-device repeatability and inter-device agreement were evaluated. On repeatability analysis, the intra-device means were not significantly different (ANOVA, p > 0.05). Intraclass correlations (ICC) were >0.98 except for J 0 and J 45. In terms of intra-measurement standard deviation (Sw), the SP and FG groups fared better than AR group (p < 0.001, ANOVA). On Sw versus Average plots, no significantly predictive fit was seen (p > 0.05, R (2) < 0.1 for all the values). On inter-device agreement analysis, there was no difference in means (ANOVA, p > 0.05). ICC ranged from 0.92 to 0.99 (p < 0.001). Regression fits on Bland-Altman plots suggested no clinically significant effect of average values over difference in means. The repeatability of Hartman type topographer in normal eyes is comparable to SP combination device and better than AR. The agreement between the three devices is good. However, we recommend against interchanging these devices between follow-ups or pooling their data.

Relative contributions of local wind and topography to the coastal upwelling intensity in the northern South China Sea

NASA Astrophysics Data System (ADS)

Wang, Dongxiao; Shu, Yeqiang; Xue, Huijie; Hu, Jianyu; Chen, Ju; Zhuang, Wei; Zu, TingTing; Xu, Jindian

2014-04-01

Topographically induced upwelling caused by the interaction between large-scale currents and topography was observed during four cruises in the northern South China Sea (NSCS) when the upwelling favorable wind retreated. Using a high-resolution version of the Princeton Ocean Model, we investigate relative contributions of local wind and topography to the upwelling intensity in the NSCS. The results show that the topographically induced upwelling is sensitive to alongshore large-scale currents, which have an important contribution to the upwelling intensity. The topographically induced upwelling is comparable with the wind-driven upwelling at surface and has a stronger contribution to the upwelling intensity than the local wind does at bottom in the near-shore shelf region. The widened shelf to the southwest of Shanwei and west of the Taiwan Banks intensifies the bottom friction, especially off Shantou, which is a key factor for topographically induced upwelling in terms of bottom Ekman transport and Ekman pumping. The local upwelling favorable wind enhances the bottom friction as well as net onshore transport along the 50 m isobath, whereas it has less influence along the 30 m isobath. This implies the local wind is more important in upwelling intensity in the offshore region than in the nearshore region. The contribution of local upwelling favorable wind on upwelling intensity is comparable with that of topography along the 50 m isobath. The effects of local upwelling favorable wind on upwelling intensity are twofold: on one hand, the wind transports surface warm water offshore, and as a compensation of mass the bottom current transports cold water onshore; on the other hand, the wind enhances the coastal current, and the bottom friction in turn increases the topographically induced upwelling intensity.

Patient-Specific Computational Modeling of Keratoconus Progression and Differential Responses to Collagen Cross-linking

PubMed Central

Sinha Roy, Abhijit

2011-01-01

Purpose. To model keratoconus (KC) progression and investigate the differential responses of central and eccentric cones to standard and alternative collagen cross-linking (CXL) patterns. Methods. Three-dimensional finite element models (FEMs) were generated with clinical tomography and IOP measurements. Graded reductions in regional corneal hyperelastic properties and thickness were imposed separately in the less affected eye of a KC patient. Topographic results, including maximum curvature and first-surface, higher-order aberrations (HOAs), were compared to those of the more affected contralateral eye. In two eyes with central and eccentric cones, a standard broad-beam CXL protocol was simulated with 200- and 300-μm treatment depths and compared to spatially graded broad-beam and cone-centered CXL simulations. Results. In a model of KC progression, maximum curvature and HOA increased as regional corneal hyperelastic properties were decreased. A topographic cone could be generated without a reduction in corneal thickness. Simulation of standard 9-mm-diameter CXL produced decreases in corneal curvature comparable to clinical reports and affected cone location. A 100-μm increase in CXL depth enhanced flattening by 24% to 34% and decreased HOA by 22% to 31%. Topographic effects were greatest with cone-centered CXL simulations. Conclusions. Progressive hyperelastic weakening of a cornea with subclinical KC produced topographic features of manifest KC. The clinical phenomenon of topographic flattening after CXL was replicated. The magnitude and higher-order optics of this response depended on IOP and the spatial distribution of stiffening relative to the cone location. Smaller diameter simulated treatments centered on the cone provided greater reductions in curvature and HOA than a standard broad-beam CXL pattern. PMID:22039252

Researching into the cellular shape, volume and elasticity of mesenchymal stem cells, osteoblasts and osteosarcoma cells by atomic force microscopy

PubMed Central

Docheva, Denitsa; Padula, Daniela; Popov, Cvetan; Mutschler, Wolf; Clausen-Schaumann, Hauke; Schieker, Matthias

2008-01-01

Abstract Within the bone lie several different cell types, including osteoblasts (OBs) and mesenchymal stem cells (MSCs). The MSCs are ideal targets for regenerative medicine of bone due to their differentiation potential towards OBs. Human MSCs exhibit two distinct morphologies: rapidly self-renewing cells (RS) and flat cells (FC) with very low proliferation rates. Another cell type found in pathological bone conditions is osteosarcoma. In this study, we compared the topographic and morphometric features of RS and FC cells, human OBs and MG63 osteosarcoma cells by atomic force microscopy (AFM). The results demonstrated clear differences: FC and hOB cells showed similar ruffled topography, whereas RS and MG63 cells exhibited smoother surfaces. Furthermore, we investigated how selected substrates influence cell morphometry. We found that RS and MG63 cells were flatter on fibrous substrates such as polystyrene and collagen I, but much more rounded on glass, the smoothest surface. In contrast, cells with large area, namely FC and hOB cells, did not exhibit pronounced changes in flatness with regards to the different substrates. They were, however, remarkably flatter in comparison to RS and MG63 cells. We could explain the differences in flatness by the extent of adhesion. Indeed, FC and hOB cells showed much higher content of focal adhesions. Finally, we used the AFM to determine the cellular Young's modulus. RS, FC and hOB cells showed comparable stiffness on the three different substrates, while MG63 cells demonstrated the unique feature of increased elasticity on collagen I. In summary, our results show, for the first time, a direct comparison between the morphometric and biophysical features of different human cell types derived from normal and pathological bone. Our study manifests the opinion that along with RNA, proteomic and functional research, morphological and biomechanical characterization of cells also reveals novel cell features and interrelationships. PMID:18419596

Spherical and ellipsoidal arrangement of the topography and its impact on gravity gradients in the GOCE mission

NASA Astrophysics Data System (ADS)

Grombein, Thomas; Seitz, Kurt; Heck, Bernhard

2010-05-01

The basic observables of the recently launched satellite gravity gradiometry mission GOCE are the second derivatives of the earth gravitational potential (components of the full Marussi tensor). These gravity gradients are highly sensitive to mass anomalies and mass transports in the earth system. The high- and mid-frequency components of the gradients are mainly affected by the topographic and isostatic masses whereby the downward continuation of the gradients is a rather difficult task. In order to stabilize this process the gradients have to be smoothed by applying topographic and isostatic reductions. In the space domain the modelling of topographic effects is based on the evaluation of functionals of the Newton integral. In the case of GOCE the second-order derivatives are required. Practical numerical computations rely on a discretisation of the earth's topography and a subdivision into different mass elements. Considering geographical gridlines tesseroids (spherical prisms) are well suited for the modelling of the topographic masses. Since the respective volume integrals cannot be solved in an elementary way in the case of tesseroids numerical approaches such as Taylor series expansion, Gauss-Legendre cubature or a point-mass approximation have to be applied. In this paper the topography is represented by the global Digital Terrain Model DTM2006.0 which was also used for the compilation of the Earth Gravitation Model EGM2008. In addition, each grid element of the DTM is classified as land, see or ice providing further information on the density within the evaluation of topographic effects. The computation points are located on a GOCE-like circular orbit. The mass elements are arranged on a spherical earth of constant radius and, in a more realistic composition, on the surface of an ellipsoid of revolution. The results of the modelling of each version are presented and compared to each other with regard to computation time and accuracy. Acknowledgements: This research has been financially supported by the German Federal Ministry of Education and Research (BMBF) within the REAL-GOCE project of the GEOTECHNOLOGIEN Programme.

Topographic steep central islands following excimer laser photorefractive keratectomy

NASA Astrophysics Data System (ADS)

Krueger, Ronald R.; McDonnell, Peter J.

1994-06-01

The purpose of this study is to demonstrate that topographic irregularities in the form of central islands of higher refractive power can be seen following excimer laser refractive surgery. We reviewed the computerized corneal topographic maps of 35 patients undergoing excimer laser PRK for compound myopic astigmatism or anisometropia from 8/91 to 8/93 at the USC/Doheny Eye Institute. The topographic maps were generated by the Computed Anatomy Corneal Modeling System, and central islands were defined as topographic areas of steepening of at least 3 diopters and 3 mm in diameter. A grading system was developed based on the presence of central islands during the postoperative period. Visually significant topographic steep central islands may be seen in over 50% of patients at 1 month following excimer laser PRK, and persist at 3 months in up to 24% of patients without nitrogen gas blowing. Loss of best corrected visual acuity or ghosting is associated with island formation, and may prolong visual rehabilitation after excimer laser PRK.

Comparison of physical and semi-empirical hydraulic models for flood inundation mapping

NASA Astrophysics Data System (ADS)

Tavakoly, A. A.; Afshari, S.; Omranian, E.; Feng, D.; Rajib, A.; Snow, A.; Cohen, S.; Merwade, V.; Fekete, B. M.; Sharif, H. O.; Beighley, E.

2016-12-01

Various hydraulic/GIS-based tools can be used for illustrating spatial extent of flooding for first-responders, policy makers and the general public. The objective of this study is to compare four flood inundation modeling tools: HEC-RAS-2D, Gridded Surface Subsurface Hydrologic Analysis (GSSHA), AutoRoute and Height Above the Nearest Drainage (HAND). There is a trade-off among accuracy, workability and computational demand in detailed, physics-based flood inundation models (e.g. HEC-RAS-2D and GSSHA) in contrast with semi-empirical, topography-based, computationally less expensive approaches (e.g. AutoRoute and HAND). The motivation for this study is to evaluate this trade-off and offer guidance to potential large-scale application in an operational prediction system. The models were assessed and contrasted via comparability analysis (e.g. overlapping statistics) by using three case studies in the states of Alabama, Texas, and West Virginia. The sensitivity and accuracy of physical and semi-eimpirical models in producing inundation extent were evaluated for the following attributes: geophysical characteristics (e.g. high topographic variability vs. flat natural terrain, urbanized vs. rural zones, effect of surface roughness paratermer value), influence of hydraulic structures such as dams and levees compared to unobstructed flow condition, accuracy in large vs. small study domain, effect of spatial resolution in topographic data (e.g. 10m National Elevation Dataset vs. 0.3m LiDAR). Preliminary results suggest that semi-empericial models tend to underestimate in a flat, urbanized area with controlled/managed river channel around 40% of the inundation extent compared to the physical models, regardless of topographic resolution. However, in places where there are topographic undulations, semi-empericial models attain relatively higher level of accuracy than they do in flat non-urbanized terrain.

The neural correlates of highly iconic structures and topographic discourse in French Sign Language as observed in six hearing native signers.

PubMed

Courtin, C; Hervé, P-Y; Petit, L; Zago, L; Vigneau, M; Beaucousin, V; Jobard, G; Mazoyer, B; Mellet, E; Tzourio-Mazoyer, N

2010-09-01

"Highly iconic" structures in Sign Language enable a narrator to act, switch characters, describe objects, or report actions in four-dimensions. This group of linguistic structures has no real spoken-language equivalent. Topographical descriptions are also achieved in a sign-language specific manner via the use of signing-space and spatial-classifier signs. We used functional magnetic resonance imaging (fMRI) to compare the neural correlates of topographic discourse and highly iconic structures in French Sign Language (LSF) in six hearing native signers, children of deaf adults (CODAs), and six LSF-naïve monolinguals. LSF materials consisted of videos of a lecture excerpt signed without spatially organized discourse or highly iconic structures (Lect LSF), a tale signed using highly iconic structures (Tale LSF), and a topographical description using a diagrammatic format and spatial-classifier signs (Topo LSF). We also presented texts in spoken French (Lect French, Tale French, Topo French) to all participants. With both languages, the Topo texts activated several different regions that are involved in mental navigation and spatial working memory. No specific correlate of LSF spatial discourse was evidenced. The same regions were more activated during Tale LSF than Lect LSF in CODAs, but not in monolinguals, in line with the presence of signing-space structure in both conditions. Motion processing areas and parts of the fusiform gyrus and precuneus were more active during Tale LSF in CODAs; no such effect was observed with French or in LSF-naïve monolinguals. These effects may be associated with perspective-taking and acting during personal transfers. 2010 Elsevier Inc. All rights reserved.

3D Marine MT Modeling for a Topographic Seafloor

NASA Astrophysics Data System (ADS)

Zhang, B., Sr.; Yin, C.; Ren, X.; Liu, Y.; Huang, X.; Liu, L.

2017-12-01

As an effective geophysical tool, marine magnetotelluric (MMT) exploration has been widely used in offshore oil and gas exploration. Accordingly, the MMT forward modelling has made big progress. However, most of the researches are focused on a flat seafloor. In this paper, we present a 3D finite-element (FE) algorithm for marine MT forward modelling based on unstructured grids that can accurately model the MMT responses for a topographic seafloor. The boundary value problem for the forward modelling is described by an Helmholtz equation together with the boundary conditions derived by assuming the electrical polarizations respectively along the x- and y-direction on the top surface of the modelling domain. Applying the Galerkin method to the boundary value problem and substituting the unstructured finite-element vector shape function into the equation, we derive the final large linear system for the two polarizations, from which the EM fields is obtained for the calculation of impedance apparent resistivities and phases. To verify the effectiveness of our algorithm, we compare our modelling results with those by Key's (2013) 2D marine MT open source code of Scripps Institution of Oceanography (Figure 1). From Figure 1, one sees that the two agree well, implying that our 3D modelling method based unstructured FE is an effective modelling tool for topographic seafloor. From the MMT modelling responses for other topographic seafloor models (not shown here), we further observe that 1) the apparent resistivities have a similar profile pattern to the topography at the seafloor; 2) at the edges of the topography, there exist sharp changes; 3) the seafloor topography may dominate the responses from the abnormal bodies under the seafloor. This paper is supported by Key Program of National Natural Science Foundation of China (41530320), China Natural Science Foundation for Young Scientists (41404093), and Key National Research Project of China (2016YFC0303100, 2017YFC0601900)

The Importance of Capturing Topographic Features for Modeling Groundwater Flow and Transport in Mountainous Watersheds

NASA Astrophysics Data System (ADS)

Wang, C.; Gomez-Velez, J. D.; Wilson, J. L.

2017-12-01

Groundwater plays a key role in runoff generation and stream water chemistry from reach to watershed scales. The spatial distribution of ridges and streams can influence the spatial patterns of groundwater recharge and drainage, specially in mountainous terrains where these features are more prominent. However, typical modeling efforts simplify or ignore some of these features due to computational limitations without a systematic investigation of the implications for flow and transport within the watershed. In this study, we investigate the effect of capturing key topographic features on modeled groundwater flow and transport characteristics in a mountainous watershed. We build model scenarios of different topographic complexity levels (TCLs) to capture different levels of representation of streams and ridges in the model. Modeled baseflow and groundwater mean residence time (MRT) are used to quantify the differences among TCLs. Our results show that capturing the streams and ridges has a significant influence on simulated groundwater flow and transport patterns. Topographic complexity controls the proportion of baseflow generated from local, intermediate, and regional flow paths, thus influencing the amount and MRT of basefow flowing into streams of different Horton-Strahler orders. We further simulate the concentration of solute exported into streams from subsurface chemical weathering. The concentration of chemical weathering products in streams is less sensitive to model TCL due to the thermodynamic constraint on the equilibrium concentration of the chemical weathering. We also tested the influence of geology on the effect of TCL. The effect of TCL is consistent under different geological conditions; however, it is enhanced in models with low hydraulic conductivity because more of the flow is forced into shallow and local flow paths. All of these changes can affect our ability to interpret environmental tracer data and predict bio- and geo-chemical evolution of stream water in mountainous watersheds.

The U.S. Geological Survey mapping and cartographic database activities, 2006-2010

USGS Publications Warehouse

Craun, Kari J.; Donnelly, John P.; Allord, Gregory J.

2011-01-01

The U.S. Geological Survey (USGS) began systematic topographic mapping of the United States in the 1880s, beginning with scales of 1:250,000 and 1:125,000 in support of geological mapping. Responding to the need for higher resolution and more detail, the 1:62,500-scale, 15-minute, topographic map series was begun in the beginning of the 20th century. Finally, in the 1950s the USGS adopted the 1:24,000-scale, 7.5-minute topographic map series to portray even more detail, completing the coverage of the conterminous 48 states of the United States with this series in 1992. In 2001, the USGS developed the vision and concept of The National Map, a topographic database for the 21st century and the source for a new generation of topographic maps (http://nationalmap.gov/). In 2008, the initial production of those maps began with a 1:24,000-scale digital product. In a separate, but related project, the USGS began scanning the existing inventory of historical topographic maps at all scales to accompany the new topographic maps. The USGS also had developed a digital database of The National Atlas of the United States. The digital version of Atlas is now Web-available and supports a mapping engine for small scale maps of the United States and North America. These three efforts define topographic mapping activities of the USGS during the last few years and are discussed below.

Application of Structure-from-Motion photogrammetry in laboratory flumes

NASA Astrophysics Data System (ADS)

Morgan, Jacob A.; Brogan, Daniel J.; Nelson, Peter A.

2017-01-01

Structure-from-Motion (SfM) photogrammetry has become widely used for topographic data collection in field and laboratory studies. However, the relative performance of SfM against other methods of topographic measurement in a laboratory flume environment has not been systematically evaluated, and there is a general lack of guidelines for SfM application in flume settings. As the use of SfM in laboratory flume settings becomes more widespread, it is increasingly critical to develop an understanding of how to acquire and process SfM data for a given flume size and sediment characteristics. In this study, we: (1) compare the resolution and accuracy of SfM topographic measurements to terrestrial laser scanning (TLS) measurements in laboratory flumes of varying physical dimensions containing sediments of varying grain sizes; (2) explore the effects of different image acquisition protocols and data processing methods on the resolution and accuracy of topographic data derived from SfM techniques; and (3) provide general guidance for image acquisition and processing for SfM applications in laboratory flumes. To investigate the effects of flume size, sediment size, and photo overlap on the density and accuracy of SfM data, we collected topographic data using both TLS and SfM in five flumes with widths ranging from 0.22 to 6.71 m, lengths ranging from 9.14 to 30.48 m, and median sediment sizes ranging from 0.2 to 31 mm. Acquisition time, image overlap, point density, elevation data, and computed roughness parameters were compared to evaluate the performance of SfM against TLS. We also collected images of a pan of gravel where we varied the distance and angle between the camera and sediment in order to explore how photo acquisition affects the ability to capture grain-scale microtopographic features in SfM-derived point clouds. A variety of image combinations and SfM software package settings were also investigated to determine optimal processing techniques. Results from this study suggest that SfM provides topographic data of similar accuracy to TLS, at higher resolution and lower cost. We found that about 100pixels per grain are required to resolve grain-scale topography. We suggest protocols for image acquisition and SfM software settings to achieve best results when using SfM in laboratory settings. In general, convergent imagery, taken from a higher angle, with at least several overlapping images for each desired point in the flume will result in an acceptable point cloud.

Write-Read 3D Patterning with a Dual-Channel Nanopipette.

PubMed

Momotenko, Dmitry; Page, Ashley; Adobes-Vidal, Maria; Unwin, Patrick R

2016-09-27

Nanopipettes are becoming extremely versatile and powerful tools in nanoscience for a wide variety of applications from imaging to nanoscale sensing. Herein, the capabilities of nanopipettes to build complex free-standing three-dimensional (3D) nanostructures are demonstrated using a simple double-barrel nanopipette device. Electrochemical control of ionic fluxes enables highly localized delivery of precursor species from one channel and simultaneous (dynamic and responsive) ion conductance probe-to-substrate distance feedback with the other for reliable high-quality patterning. Nanopipettes with 30-50 nm tip opening dimensions of each channel allowed confinement of ionic fluxes for the fabrication of high aspect ratio copper pillar, zigzag, and Γ-like structures, as well as permitted the subsequent topographical mapping of the patterned features with the same nanopipette probe as used for nanostructure engineering. This approach offers versatility and robustness for high-resolution 3D "printing" (writing) and read-out at the nanoscale.

The Role of Electrospinning in the Emerging Field of Nanomedicine

PubMed Central

Chew, SY; Wen, Y; Dzenis, Y; Leong, KW

2008-01-01

The fact that in vivo the extracellular matrix or substratum with which cells interact often includes topography at the nanoscale underscores the importance of investigating cell-substrate interactions and performing cell culture at the submicron scale. An important and exciting direction of research in nanomedicine would be to gain an understanding and exploit the cellular response to nanostructures. Electrospinning is a simple and versatile technique that can produce a macroporous scaffold comprising randomly oriented or aligned nanofibers. It can also accommodate the incorporation of drug delivery function into the fibrous scaffold. Endowed with both topographical and biochemical signals such electrospun nanofibrous scaffolds may provide an optimal microenvironment for the seeded cells. This review covers the analysis and control of the electrospinning process, and describes the types of electrospun fibers fabricated for biomedical applications such as drug delivery and tissue engineering. PMID:17168776

AFM investigation and optical band gap study of chemically deposited PbS thin films

NASA Astrophysics Data System (ADS)

Zaman, S.; Mansoor, M.; Abubakar; Asim, M. M.

2016-08-01

The interest into deposition of nanocrystalline PbS thin films, the potential of designing and tailoring both the topographical features and the band gap energy (Eg) by controlling growth parameters, has significant technological importance. Nanocrystalline thin films of lead sulfide were grown onto glass substrates by chemical bath deposition (CBD) method. The experiments were carried out by varying deposition temperature. We report on the modification of structural and optical properties as a function of deposition temperature. The morphological changes of the films were analyzed by using SEM and AFM. AFM was also used to calculate average roughness of the films. XRD spectra indicated preferred growth of cubic phase of PbS films in (200) direction with increasing deposition time. Optical properties have been studied by UV-Spectrophotometer. From the diffused reflectance spectra we have calculated the optical Eg shift from 0.649-0.636 eV with increasing deposition time.

Nano-patterned SU-8 surface using nanosphere-lithography for enhanced neuronal cell growth

NASA Astrophysics Data System (ADS)

Kim, Eunhee; Yoo, Seung-Jun; Kim, Eunjung; Kwon, Tae-Hwan; Zhang, Li; Moon, Cheil; Choi, Hongsoo

2016-04-01

Mimicking the nanoscale surface texture of the extracellular matrix can affect the regulation of cellular behavior, including adhesion, differentiation, and neurite outgrowth. In this study, SU-8-based polymer surfaces with well-ordered nanowell arrays were fabricated using nanosphere lithography with polystyrene nanoparticles. We show that the SU-8 surface with nanowells resulted in similar neuronal development of rat pheochromocytoma (PC12) cells compared with an unpatterned poly-L-lysine (PLL)-coated SU-8 surface. Additionally, even after soaking the substrate in cell culture medium for two weeks, cells on the nanowell SU-8 surface showed long-term neurite outgrowth compared to cells on the PLL-coated SU-8 surface. The topographical surface modification of the nanowell array demonstrates potential as a replacement for cell adhesive material coatings such as PLL, for applications requiring long-term use of polymer-based implantable devices.

Directed Self-Assembly on Photo-Crosslinked Polystyrene Sub-Layers: Nanopattern Uniformity and Orientation

PubMed Central

Koh, Haeng-Deog; Kim, Mi-Jeong

2016-01-01

A photo-crosslinked polystyrene (PS) thin film is investigated as a potential guiding sub-layer for polystyrene-block-poly (methyl methacrylate) block copolymer (BCP) cylindrical nanopattern formation via topographic directed self-assembly (DSA). When compared to a non-crosslinked PS brush sub-layer, the photo-crosslinked PS sub-layer provided longer correlation lengths of the BCP nanostructure, resulting in a highly uniform DSA nanopattern with a low number of BCP dislocation defects. Depending on the thickness of the sub-layer used, parallel or orthogonal orientations of DSA nanopattern arrays were obtained that covered the entire surface of patterned Si substrates, including both trench and mesa regions. The design of DSA sub-layers and guide patterns, such as hardening the sub-layer by photo-crosslinking, nano-structuring on mesas, the relation between trench/mesa width, and BCP equilibrium period, were explored with a view to developing defect-reduced DSA lithography technology. PMID:28773768

High resolution imaging of latent fingerprints by localized corrosion on brass surfaces.

PubMed

Goddard, Alex J; Hillman, A Robert; Bond, John W

2010-01-01

The Atomic Force Microscope (AFM) is capable of imaging fingerprint ridges on polished brass substrates at an unprecedented level of detail. While exposure to elevated humidity at ambient or slightly raised temperatures does not change the image appreciably, subsequent brief heating in a flame results in complete loss of the sweat deposit and the appearance of pits and trenches. Localized elemental analysis (using EDAX, coupled with SEM imaging) shows the presence of the constituents of salt in the initial deposits. Together with water and atmospheric oxygen--and with thermal enhancement--these are capable of driving a surface corrosion process. This process is sufficiently localized that it has the potential to generate a durable negative topographical image of the fingerprint. AFM examination of surface regions between ridges revealed small deposits (probably microscopic "spatter" of sweat components or transferred particulates) that may ultimately limit the level of ridge detail analysis.

Influence of topographically patterned angled guidelines on directed self-assembly of block copolymers

NASA Astrophysics Data System (ADS)

Rebello, Nathan; Sethuraman, Vaidyanathan; Blachut, Gregory; Ellison, Christopher J.; Willson, C. Grant; Ganesan, Venkat

2017-11-01

Single chain in mean-field Monte Carlo simulations were employed to study the self-assembly of block copolymers (BCP) in thin films that use trapezoidal guidelines to direct the orientation and alignment of lamellar patterns. The present study explored the influence of sidewall interactions and geometry of the trapezoidal guidelines on the self-assembly of perpendicularly oriented lamellar morphologies. When both the sidewall and the top surface exhibit preferential interactions to the same block of the BCP, trapezoidal guidelines with intermediate taper angles were found to result in less defective perpendicularly orientated morphologies. Similarly, when the sidewall and top surface are preferential to distinct blocks of the BCP, intermediate tapering angles were found to be optimal in promoting defect free structures. Such results are rationalized based on the energetics arising in the formation of perpendicularly oriented lamella on patterned substrates.

Does small-bodied salmon spawning activity enhance streambed mobility?

NASA Astrophysics Data System (ADS)

Hassan, Marwan A.; Tonina, Daniele; Buxton, Todd H.

2015-09-01

Female salmonids bury and lay their eggs in streambeds by digging a pit, which is then covered with sediment from a second pit that is dug immediately upstream. The spawning process alters streambed topography, winnows fine sediment, and mixes sediment in the active layer. The resulting egg nests (redds) contain coarser and looser sediments than those of unspawned streambed areas, and display a dune-like shape with an amplitude and length that vary with fish size, substrate conditions, and flow conditions. Redds increase local bed surface roughness (<10-1 channel width, W), but may reduce the size of macro bedforms by eroding reach-scale topography (100-101W). Research has suggested that spawning may increase flow resistance due to redd form drag, resulting in lower grain shear stress and less particle mobility. Spawning, also prevents streambed armoring by mixing surface and subsurface material, potentially increasing particle mobility. Here we use two-dimensional hydraulic modeling with detailed prespawning and postspawning bathymetries and field observations to test the effect of spawning by small-bodied salmonids on sediment transport. Our results show that topographical roughness from small salmon redds has negligible effects on shear stress at the reach-unit scale, and limited effects at the local scale. Conversely, results indicate sediment mixing reduces armoring and enhances sediment mobility, which increases potential bed load transport by subsequent floods. River restoration in fish-bearing streams should take into consideration the effects of redd excavation on channel stability. This is particularly important for streams that historically supported salmonids and are the focus of habitat restoration actions.

Characterizing nanoscale topography of the aortic heart valve basement membrane for tissue engineering heart valve scaffold design.

PubMed

Brody, Sarah; Anilkumar, Thapasimuthu; Liliensiek, Sara; Last, Julie A; Murphy, Christopher J; Pandit, Abhay

2006-02-01

A fully effective prosthetic heart valve has not yet been developed. A successful tissue-engineered valve prosthetic must contain a scaffold that fully supports valve endothelial cell function. Recently, topographic features of scaffolds have been shown to influence the behavior of a variety of cell types and should be considered in rational scaffold design and fabrication. The basement membrane of the aortic valve endothelium provides important parameters for tissue engineering scaffold design. This study presents a quantitative characterization of the topographic features of the native aortic valve endothelial basement membrane; topographical features were measured, and quantitative data were generated using scanning electron microscopy (SEM), atomic force microscopy (AFM), transmission electron microscopy (TEM), and light microscopy. Optimal conditions for basement membrane isolation were established. Histological, immunohistochemical, and TEM analyses following decellularization confirmed basement membrane integrity. SEM and AFM photomicrographs of isolated basement membrane were captured and quantitatively analyzed. The basement membrane of the aortic valve has a rich, felt-like, 3-D nanoscale topography, consisting of pores, fibers, and elevations. All features measured were in the sub-100 nm range. No statistical difference was found between the fibrosal and ventricular surfaces of the cusp. These data provide a rational starting point for the design of extracellular scaffolds with nanoscale topographic features that mimic those found in the native aortic heart valve basement membrane.

Characterizing Nanoscale Topography of the Aortic Heart Valve Basement Membrane for Tissue Engineering Heart Valve Scaffold Design

PubMed Central

BRODY, SARAH; ANILKUMAR, THAPASIMUTHU; LILIENSIEK, SARA; LAST, JULIE A.; MURPHY, CHRISTOPHER J.; PANDIT, ABHAY

2016-01-01

A fully effective prosthetic heart valve has not yet been developed. A successful tissue-engineered valve prosthetic must contain a scaffold that fully supports valve endothelial cell function. Recently, topographic features of scaffolds have been shown to influence the behavior of a variety of cell types and should be considered in rational scaffold design and fabrication. The basement membrane of the aortic valve endothelium provides important parameters for tissue engineering scaffold design. This study presents a quantitative characterization of the topographic features of the native aortic valve endothelial basement membrane; topographical features were measured, and quantitative data were generated using scanning electron microscopy (SEM), atomic force microscopy (AFM), transmission electron microscopy (TEM), and light microscopy. Optimal conditions for basement membrane isolation were established. Histological, immunohistochemical, and TEM analyses following decellularization confirmed basement membrane integrity. SEM and AFM photomicrographs of isolated basement membrane were captured and quantitatively analyzed. The basement membrane of the aortic valve has a rich, felt-like, 3-D nanoscale topography, consisting of pores, fibers, and elevations. All features measured were in the sub-100 nm range. No statistical difference was found between the fibrosal and ventricular surfaces of the cusp. These data provide a rational starting point for the design of extracellular scaffolds with nanoscale topographic features that mimic those found in the native aortic heart valve basement membrane. PMID:16548699

Using satellite vegetation and compound topographic indices to map highly erodible cropland buffers for cellulosic biofuel crop developments in eastern Nebraska, USA

USGS Publications Warehouse

Gu, Yingxin; Wylie, Bruce K.

2015-01-01

Cultivating annual row crops in high topographic relief waterway buffers has negative environmental effects and can be environmentally unsustainable. Growing perennial grasses such as switchgrass (Panicum virgatum L.) for biomass (e.g., cellulosic biofuel feedstocks) instead of annual row crops in these high relief waterway buffers can improve local environmental conditions (e.g., reduce soil erosion and improve water quality through lower use of fertilizers and pesticides) and ecosystem services (e.g., minimize drought and flood impacts on production; improve wildlife habitat, plant vigor, and nitrogen retention due to post-senescence harvest for cellulosic biofuels; and serve as carbon sinks). The main objectives of this study are to: (1) identify cropland areas with high topographic relief (high runoff potentials) and high switchgrass productivity potential in eastern Nebraska that may be suitable for growing switchgrass, and (2) estimate the total switchgrass production gain from the potential biofuel areas. Results indicate that about 140,000 hectares of waterway buffers in eastern Nebraska are suitable for switchgrass development and the total annual estimated switchgrass biomass production for these suitable areas is approximately 1.2 million metric tons. The resulting map delineates high topographic relief croplands and provides useful information to land managers and biofuel plant investors to make optimal land use decisions regarding biofuel crop development and ecosystem service optimization in eastern Nebraska.

Topographic mapping of the Apollo 16 landing site

NASA Technical Reports Server (NTRS)

Hill, R. O.; Bender, M. J.

1972-01-01

The techniques are described for obtaining high resolution photographs from the Apollo 14 lunar orbiter for topographic mapping of the Descartes landing site for use in planning Apollo 16. The Apollo 16 spacecraft landed approximately 250 m from the selected target point, and few topographic surprises were encountered.

TOPSAT: Global space topographic mission

NASA Technical Reports Server (NTRS)

Vetrella, Sergio

1993-01-01

Viewgraphs on TOPSAT Global Space Topographic Mission are presented. Topics covered include: polar region applications; terrestrial ecosystem applications; stereo electro-optical sensors; space-based stereoscopic missions; optical stereo approach; radar interferometry; along track interferometry; TOPSAT-VISTA system approach; ISARA system approach; topographic mapping laser altimeter; and role of multi-beam laser altimeter.

An Interdisciplinary Theme: Topographic Maps and Plate Tectonics

ERIC Educational Resources Information Center

Concannon, James P.; Aulgur, Linda

2011-01-01

This is an interdisciplinary lesson designed for middle school students studying landforms and geological processes. Students create a two-dimensional topographic map from a three-dimensional landform that they create using clay. Students then use other groups' topographic maps to re-create landforms. Following this, students explore some basic…

Promotion of Myogenic Maturation by Timely Application of Electric Field Along the Topographical Alignment.

PubMed

Ko, Ung Hyun; Park, Sukhee; Bang, Hyunseung; Kim, Mina; Shin, Hyunjun; Shin, Jennifer H

2018-05-01

Engineered muscular substitutes can restore the impaired muscle functions when integrated properly into the host tissue. To generate functional muscles with sufficient contractility at the site of transplant, the in vitro construction of fully differentiated muscle fibers would be desired. Many previous reports have identified either topographical alignment or electrical stimulation as an effective tool to promote myogenic differentiation. However, optimization of spatial and temporal arrangement of these two physical cues for better differentiation and maturation of skeletal muscles has not been investigated. In this article, we introduce a novel cell culture system that allows simultaneous application of these two independent directional cues at both orthogonal and parallel arrangements. We then show that the parallel arrangement of the aligned topography and the electric field synergistically facilitates better differentiation and maturation of C2C12, generating myotubes with more fused nuclei. Addition of the electric stimulation at the late stage of myogenic differentiation is found to further improve cell fusion to form multinucleate myotubes through a phosphatidylinositol-3-OH-kinase-dependent pathway. As such, we successfully demonstrated that the combined stimulation of topographical and electrical cues could effectively enhance both myogenic differentiation and maturation in a temporal and orientation-dependent manner, providing the basis for therapeutic strategies for regenerative tissue engineering.

Multiphase groundwater flow near cooling plutons

USGS Publications Warehouse

Hayba, D.O.; Ingebritsen, S.E.

1997-01-01

We investigate groundwater flow near cooling plutons with a computer program that can model multiphase flow, temperatures up to 1200??C, thermal pressurization, and temperature-dependent rock properties. A series of experiments examines the effects of host-rock permeability, size and depth of pluton emplacement, single versus multiple intrusions, the influence of a caprock, and the impact of topographically driven groundwater flow. We also reproduce and evaluate some of the pioneering numerical experiments on flow around plutons. Host-rock permeability is the principal factor influencing fluid circulation and heat transfer in hydrothermal systems. The hottest and most steam-rich systems develop where permeability is of the order of 10-15 m2. Temperatures and life spans of systems decrease with increasing permeability. Conduction-dominated systems, in which permeabilities are ???10-16m2, persist longer but exhibit relatively modest increases in near-surface temperatures relative to ambient conditions. Pluton size, emplacement depth, and initial thermal conditions have less influence on hydrothermal circulation patterns but affect the extent of boiling and duration of hydrothermal systems. Topographically driven groundwater flow can significantly alter hydrothermal circulation; however, a low-permeability caprock effectively decouples the topographically and density-driven systems and stabilizes the mixing interface between them thereby defining a likely ore-forming environment.

Preliminary results of strong ground motion simulation for the Lushan earthquake of 20 April 2013, China

NASA Astrophysics Data System (ADS)

Zhu, Gengshang; Zhang, Zhenguo; Wen, Jian; Zhang, Wei; Chen, Xiaofei

2013-08-01

The earthquake occurred in Lushan County on 20 April, 2013 caused heavy casualty and economic loss. In order to understand how the seismic energy propagates during this earthquake and how it causes the seismic hazard, we simulated the strong ground motions from a representative kinematic source model by Zhang et al. (Chin J Geophys 56(4):1408-1411, 2013) for this earthquake. To include the topographic effects, we used the curved grids finite difference method by Zhang and Chen (Geophys J Int 167(1):337-353, 2006), Zhang et al. (Geophys J Int 190(1):358-378, 2012) to implement the simulations. Our results indicated that the majority of seismic energy concentrated in the epicentral area and the vicinal Sichuan Basin, causing the XI and VII degree intensity. Due to the strong topographic effects of the mountain, the seismic intensity in the border area across the northeastern of Boxing County to the Lushan County also reached IX degree. Moreover, the strong influence of topography caused the amplifications of ground shaking at the mountain ridge, which is easy to cause landslides. These results are quite similar to those observed in the Wenchuan earthquake of 2008 occurred also in a strong topographic mountain area.

Surface ripple evolution by argon ion irradiation in polymers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goyal, Meetika; Aggarwal, Sanjeev, E-mail: write2sa@gmail.com; Sharma, Annu

In this report, an attempt has been made to investigate the morphological evolution of nanoscale surface ripples on aliphatic (polypropylene, PP) and aromatic (polyethylene terephthalate, PET) polymeric substrates irradiated with 50 keV Ar{sup +} ions. The specimens were sputtered at off normal incidence of 30° with 5 × 10{sup 16} Ar{sup +} cm{sup −2}. The topographical features and structural behavior of the specimens were studied using Atomic Force Microscopy (AFM) and UV-Visible spectroscopy techniques, respectively. The Stopping and Range of Ions in Matter simulations were performed to calculate sputtering yield of irradiated PP and PET polymers. Sputtering yield of carbon atoms has beenmore » found to be smaller for PP (0.40) as compared to PET (0.73), which is attributed to the different structures of two polymers. AFM analysis demonstrates the evolution of ripple like features with amplitude (2.50 nm) and wavelength (690 nm) on PET while that of lower amplitude (1.50 nm) and higher wavelength (980 nm) on PP specimen. The disorder parameter (Urbach energy) has been found to increase significantly from 0.30 eV to 1.67 eV in case of PP as compared to a lesser increase from 0.35 eV to 0.72 eV in case of PET as revealed by UV-Visible characterization. A mutual correlation between ion beam sputtering induced topographical variations with that of enhancement in the disorder parameter of the specimens has been discussed.« less

The synergetic effect of moisture protection, substrate quality and biotic acclimation on soil organic carbon persistence along a cultivated loamy hillslope

NASA Astrophysics Data System (ADS)

Wiaux, François; Vanclooster, Marnik; Cornelis, Jean-Thomas; Van Oost, Kristof

2014-05-01

The combination of hydrologic, geomorphic and biogeochemical approaches is required to determine organic carbon (OC) persistence and dynamics within landscapes. Here, we used soil in-situ surface heterotrophic respiration measurement as an indicator of OC persistence along a hillslope (crop field on the loess belt under temperate climate), characterized by an important erosion-induced OC stock colluvium downslope. Along this topographical gradient, we quantified the space-time structure of soil water and temperature, and soil OC amount and quality (from a chemical point of view based on NaOCl oxidation) in relation to CO2 fluxes. We used a Generalized Least Square (GLS) regression model to identify the role of each abiotic factor as well as their interactions on observed soil respiration rates, and to calculate time-average values of these CO2 fluxes at each studied slope positions. We observed significant differences between the observed respiration rates along the topographical gradient (up to 30% more CO2 emissions downslope and 50% backslope, relative to un-eroded summit position). Despite mean CO2 fluxes (standardized at 15°C) at the bottom of the slope are significantly higher (p<0.05) than at the top of the hillslope, this difference is lower than expected given the high OC stock found downslope (c.2 times higher than at the summit position). In the cultivated loamy hillslope, the soil OC persistence is mainly controlled by the stabilizing effect of the high moisture content, implying large amount of OC. This provides evidence that soil OC dynamic (sink or source) can be mainly governed by site-specific abiotic conditions (e.g. soil moisture). On the other hand, OC found downslope was showed to be especially vulnerable for OC mineralization (it would emit 26% to c.40% more CO2 in case of temperature increase), due to both (i) improved efficiency of soil-micro-organisms in stabilizing conditions, and (ii) high quality of OC stock (easy to decompose for soil micro-organisms). This leads to consider erosion-induced OC stocks in downslope colluviums as "delayed bombs", which may be reconnected to the atmosphere if the current stabilizing conditions of this specific pedo-climatic ecosystem would be changed.

A topo-graph model for indistinct target boundary definition from anatomical images.

PubMed

Cui, Hui; Wang, Xiuying; Zhou, Jianlong; Gong, Guanzhong; Eberl, Stefan; Yin, Yong; Wang, Lisheng; Feng, Dagan; Fulham, Michael

2018-06-01

It can be challenging to delineate the target object in anatomical imaging when the object boundaries are difficult to discern due to the low contrast or overlapping intensity distributions from adjacent tissues. We propose a topo-graph model to address this issue. The first step is to extract a topographic representation that reflects multiple levels of topographic information in an input image. We then define two types of node connections - nesting branches (NBs) and geodesic edges (GEs). NBs connect nodes corresponding to initial topographic regions and GEs link the nodes at a detailed level. The weights for NBs are defined to measure the similarity of regional appearance, and weights for GEs are defined with geodesic and local constraints. NBs contribute to the separation of topographic regions and the GEs assist the delineation of uncertain boundaries. Final segmentation is achieved by calculating the relevance of the unlabeled nodes to the labels by the optimization of a graph-based energy function. We test our model on 47 low contrast CT studies of patients with non-small cell lung cancer (NSCLC), 10 contrast-enhanced CT liver cases and 50 breast and abdominal ultrasound images. The validation criteria are the Dice's similarity coefficient and the Hausdorff distance. Student's t-test show that our model outperformed the graph models with pixel-only, pixel and regional, neighboring and radial connections (p-values <0.05). Our findings show that the topographic representation and topo-graph model provides improved delineation and separation of objects from adjacent tissues compared to the tested models. Copyright © 2018 Elsevier B.V. All rights reserved.

Form drag in rivers due to small-scale natural topographic features: 2. Irregular sequences

USGS Publications Warehouse

Kean, J.W.; Smith, J.D.

2006-01-01

The size, shape, and spacing of small-scale topographic features found on the boundaries of natural streams, rivers, and floodplains can be quite variable. Consequently, a procedure for determining the form drag on irregular sequences of different-sized topographic features is essential for calculating near-boundary flows and sediment transport. A method for carrying out such calculations is developed in this paper. This method builds on the work of Kean and Smith (2006), which describes the flow field for the simpler case of a regular sequence of identical topographic features. Both approaches model topographic features as two-dimensional elements with Gaussian-shaped cross sections defined in terms of three parameters. Field measurements of bank topography are used to show that (1) the magnitude of these shape parameters can vary greatly between adjacent topographic features and (2) the variability of these shape parameters follows a lognormal distribution. Simulations using an irregular set of topographic roughness elements show that the drag on an individual element is primarily controlled by the size and shape of the feature immediately upstream and that the spatial average of the boundary shear stress over a large set of randomly ordered elements is relatively insensitive to the sequence of the elements. In addition, a method to transform the topography of irregular surfaces into an equivalently rough surface of regularly spaced, identical topographic elements also is given. The methods described in this paper can be used to improve predictions of flow resistance in rivers as well as quantify bank roughness.

Effects of topographical position on soil organic carbon and nitrogen in Mediterranean olive groves

NASA Astrophysics Data System (ADS)

Lozano-García, Beatriz; Parras-Alcántara, Luis

2014-05-01

INTRODUCTION The most important and extensive crops in the Mediterranean area are olive groves. Within the last 50 years, the surface occupied by olive groves has progressively increased in Spain including more complex topographies, with steeper slopes and higher altitudes. This situation has caused serious erosion problems; there is a huge range of studies assessing possible solutions to this problem and new tillage and management techniques have been developed (Lozano-García and Parras-Alcántara, 2013). However, topography has influence in soil properties too. The impact of the topographical position on soil properties, including soil organic carbon (SOC) and Nitrogen (N) stocks, and soil quality (expressed as Stratification Ratios-SRs) was evaluated in a Mediterranean olive grove with traditional tillage. MATERIAL AND METHODS The study was carried out in a rain-fed olive grove in Jaén managed with traditional tillage (with disc harrow 25 cm) and receiving mineral fertilization. Three topographical positions with the same aspect: summit, backslope and toeslope were chosen for evaluation. The soil samples were taken from four soil sections of 0.25 m (0-1 m) in order to establish a good comparison. Soil properties determined were: soil particle size, SOC and total Nitrogen (N). SOC and N stock, expressed for a specific depth in Mg ha-1. Stratification ratios (that can be used as an indicator of dynamic soil quality) for SOC and N at three different depths were calculated. The effect of topographical position on SOC and N stocks and other soil properties was analyzed using a ANOVA, followed by a Tuckey test. RESULTS SOC decreased with depth, in addition, the SOC and N content increased along the downslope direction (5.5, 6.5 and 7.1 g C kg-1; and 0.3, 0.8 and 0.9 g N kg-1 in the surface layer in the summit, backslope and toeslope respectively) as well as SOC stock considering the two first soil sections. The N stock varied significantly along the topographical positions, increasing from the summit to the toeslope (6.2, 8.6 and 10.6 Mg ha-1 in the summit, backslope and toeslope respectively), this may be due to the leaching effect suffered by urea. These increases along the downslope direction were due to erosion processes that occur along the toposequence, leading to organic matter losses (C and N) from the summit to the toeslope. As well, there was movement of the most erodible textural fraction (silt). All the SRs calculated were lower than 2. However, the lower values of SR were obtained in the summit, so the SRs confirm that the low values of SOC and N in this topographical position are progressively decreasing the soil quality in this position. Therefore, alternative management techniques that avoid soil erosion must be considered in order to increase the soil quality, especially in those topographical positions which suffer higher losses of SOC and N. REFERENCES Parras-Alcántara, L., Díaz-Jaimes, L., Lozano-García, B., 2013b. Organic farming affects C and N in soils under olive groves in Mediterranean areas. Land Degradation and Development (article in press) DOI: 10.1002/ldr.2231.

THE INFLUENCE OF THE SPATIAL DISTRIBUTION OF SNOW ON BASIN-AVERAGED SNOWMELT. (R824784)

EPA Science Inventory

Spatial variability in snow accumulation and melt owing to topographic effects on solar radiation, snow drifting, air temperature and precipitation is important in determining the timing of snowmelt releases. Precipitation and temperature effects related to topography affect snow...

Impact of DEM and soils on topographic index, as used in TopoSWAT

USDA-ARS?s Scientific Manuscript database

A topographic index (TI), comprised of slope and upstream contributing area, is used in TopoSWAT to help account for variable source runoff and soil moisture. The level of precision in the GIS input data layers can substantially impact the calculations of the topographic index layer and affect the a...

Topographic evolution of a continental indenter: The eastern Southern Alps

NASA Astrophysics Data System (ADS)

Robl, Jörg; Heberer, Bianca; Prasicek, Günther; Neubauer, Franz; Hergarten, Stefan

2017-04-01

The topographic evolution of the eastern Southern Alps (ESA) is controlled by the Late Oligocene - Early Miocene indentation of the Adriatic microplate into an overthickened orogenic wedge emplaced on top of the European plate. Rivers follow topographic gradients that evolve during continental collision and in turn incise into bedrock counteracting the formation of topography. In principle, erosional surface processes tend to establish a topographic steady state so that an interpretation of topographic metrics in terms of the latest tectonic history should be straightforward. However, a series of complications impede deciphering the topographic record of the ESA. The Pleistocene glaciations locally excavated alpine valleys and perturbed fluvial drainages. The Late Miocene desiccation of the Mediterranean Sea and the uplift of the northern Molasse Basin led to significant base level changes in the far field of the ESA and the Eastern Alps (EA), respectively. Among this multitude of mechanisms, the processes that dominate the current topographic evolution of the ESA and the ESA-EA drainage divide have not been identified and a number of questions regarding the interaction of crustal deformation, erosion and climate in shaping the present-day topography remain. We demonstrate the expected topographic effects of each mechanism in a 1-dimensional model and compare them with observed channel metrics. Modern uplift rates are largely consistent with long-term exhumation in the ESA and with variations in the normalized steepness index (ksn) indicating a stable uplift and erosion pattern since Miocene times. We find that ksn increases with uplift rate and declines from the indenter tip in the northwest to the foreland basin in the southeast. The number and magnitude of knickpoints and the distortion in longitudinal channel profiles similarly decrease towards the east. Most knickpoints probably evolved during Pleistocene glaciation cycles, but may represent the incrementally reactivated, buried incision signal triggered by the Messinian desiccation of the Mediterranean Sea. Changes in slope of χ-transformed channel profiles coincide spatially with the Valsugana - Fella fault linking crustal stacking and uplift induced by indenter tectonics with topographic evolution. Gradients in χ across the ESA-EA drainage divide imply an ongoing, north-directed shift of the Danube-ESA watershed. This implies that ESA streams spread to the domain of the EA by drainage divide migration and river capture events. As already observed in the Adige catchment, the Periadriatic fault system loses its significance for the morphological evolution of the EA-ESA. The observed northward migration of the ESA-EA drainage divide is most likely driven by a base level rise in the northern Molasse basin, which leads to a growth of the ESA and Rhine catchments at the expense of the Danube drainage area. We conclude that the regional uplift pattern controls the geometry of ESA-EA channels, while base level changes in the far field control the overall architecture of the orogen by drainage divide migration (Robl et al., 2016). Robl, J., B. Heberer, G. Prasicek, F. Neubauer, and S. Hergarten (2016), The topography of a continental indenter: The interplay between crustal deformation, erosion and base level changes in the eastern Southern Alps, J. Geophys. Res. Earth Surf., 121, doi:10.1002/2016JF003884.

On the topographic bias and density distribution in modelling the geoid and orthometric heights

NASA Astrophysics Data System (ADS)

Sjöberg, Lars E.

2018-03-01

It is well known that the success in precise determinations of the gravimetric geoid height (N) and the orthometric height (H) rely on the knowledge of the topographic mass distribution. We show that the residual topographic bias due to an imprecise information on the topographic density is practically the same for N and H, but with opposite signs. This result is demonstrated both for the Helmert orthometric height and for a more precise orthometric height derived by analytical continuation of the external geopotential to the geoid. This result leads to the conclusion that precise gravimetric geoid heights cannot be validated by GNSS-levelling geoid heights in mountainous regions for the errors caused by the incorrect modelling of the topographic mass distribution, because this uncertainty is hidden in the difference between the two geoid estimators.

Quantitative analysis of osteoblast behavior on microgrooved hydroxyapatite and titanium substrata.

PubMed

Lu, Xiong; Leng, Yang

2003-09-01

The effects of implant surface topography and chemistry on osteoblast behavior have been a research focus because of their potential importance in orthopedic and dental applications. This work focused on the topographic effects of hydroxyapatite (HA) and titanium (Ti) surface that had identical micropatterns to determine whether there was synergistic interaction between surface chemistry and surface topography. Surface microgrooves with six different groove widths (4, 8, 16, 24, 30, and 38 microm) and three different groove depths (2, 4, and 10 microm) were made on single crystalline silicon wafers using microfabrication techniques. Ti and HA thin films were coated on the microgrooves by radio-frequency magnetron sputtering. After that, human osteoblast-like cells were seeded and cultured on the microgrooved surfaces for up to 7 days. The cells' behavior was examined using scanning electron microscopy after cells were fixed and dehydrated. Statistical analysis was based on quantitative data of orientation angle, evaluating the contact guidance, and form index, describing cell shape or cell morphology changes. The contact guidance and cell shape changes were observed on the HA and Ti microgrooves. No difference in orientation angle between HA and Ti microgrooves was found. This might suggest that surface chemistry was not a significant influence on cell guidance. However, the form index analysis indicated an interaction between topographic effects and surface chemistry. Thus, conclusions about surface topographic effects on cell behavior drawn from one type of material cannot simply be applied to another type of material. Copyright 2003 Wiley Periodicals, Inc. J Biomed Mater Res 66A: 677-687, 2003

Effects of realistic topography on the ground motion of the Colombian Andes - A case study at the Aburrá Valley, Antioquia

NASA Astrophysics Data System (ADS)

Restrepo, Doriam; Bielak, Jacobo; Serrano, Ricardo; Gómez, Juan; Jaramillo, Juan

2016-03-01

This paper presents a set of deterministic 3-D ground motion simulations for the greater metropolitan area of Medellín in the Aburrá Valley, an earthquake-prone region of the Colombian Andes that exhibits moderate-to-strong topographic irregularities. We created the velocity model of the Aburrá Valley region (version 1) using the geological structures as a basis for determining the shear wave velocity. The irregular surficial topography is considered by means of a fictitious domain strategy. The simulations cover a 50 × 50 × 25 km3 volume, and four Mw = 5 rupture scenarios along a segment of the Romeral fault, a significant source of seismic activity in Colombia. In order to examine the sensitivity of ground motion to the irregular topography and the 3-D effects of the valley, each earthquake scenario was simulated with three different models: (i) realistic 3-D velocity structure plus realistic topography, (ii) realistic 3-D velocity structure without topography, and (iii) homogeneous half-space with realistic topography. Our results show how surface topography affects the ground response. In particular, our findings highlight the importance of the combined interaction between source-effects, source-directivity, focusing, soft-soil conditions, and 3-D topography. We provide quantitative evidence of this interaction and show that topographic amplification factors can be as high as 500 per cent at some locations. In other areas within the valley, the topographic effects result in relative reductions, but these lie in the 0-150 per cent range.

Landscape features, standards, and semantics in U.S. national topographic mapping databases

USGS Publications Warehouse

Varanka, Dalia

2009-01-01

The objective of this paper is to examine the contrast between local, field-surveyed topographical representation and feature representation in digital, centralized databases and to clarify their ontological implications. The semantics of these two approaches are contrasted by examining the categorization of features by subject domains inherent to national topographic mapping. When comparing five USGS topographic mapping domain and feature lists, results indicate that multiple semantic meanings and ontology rules were applied to the initial digital database, but were lost as databases became more centralized at national scales, and common semantics were replaced by technological terms.

Scanning and georeferencing historical USGS quadrangles

USGS Publications Warehouse

Davis, Larry R.; Allord, G.J.

2011-01-01

The USGS Historical Quadrangle Scanning Project (HQSP) is scanning all scales and all editions of approximately 250,000 topographic maps published by the U.S. Geological Survey (USGS) since the inception of the topographic mapping program in 1884. This scanning will provide a comprehensive digital repository of USGS topographic maps, available to the public at no cost. This project serves the dual purpose of creating a master catalog and digital archive copies of the irreplaceable collection of topographic maps in the USGS Reston Map Library as well as making the maps available for viewing and downloading from the USGS Store and The National Map Viewer.

Topographic Maps: Rediscovering an Accessible Data Source for Land Cover Change Research

ERIC Educational Resources Information Center

McChesney, Ron; McSweeney, Kendra

2005-01-01

Given some limitations of satellite imagery for the study of land cover change, we draw attention here to a robust and often overlooked data source for use in student research: USGS topographic maps. Topographic maps offer an inexpensive, rapid, and accessible means for students to analyze land cover change over large areas. We demonstrate our…

On the influence of substrate morphology and surface area on phytofauna

USGS Publications Warehouse

Becerra-Munoz, S.; Schramm, H.L.

2007-01-01

The independent effects and interactions between substrate morphology and substrate surface area on invertebrate density or biomass colonizing artificial plant beds were assessed in a clear-water and a turbid playa lake in Castro County, Texas, USA. Total invertebrate density and biomass were consistently greater on filiform substrates than on laminar substrates with equivalent substrate surface areas. The relationship among treatments (substrates with different morphologies and surface areas) and response (invertebrate density or biomass) was assessed with equally spaced surface areas. Few statistically significant interactions between substrate morphology and surface area were detected, indicating that these factors were mostly independent from each other in their effect on colonizing invertebrates. Although infrequently, when substrate morphology and surface area were not independent, the effects of equally spaced changes in substrate surface area on the rate of change of phytofauna density or biomass per unit of substrate surface area were dependent upon substrate morphology. The absence of three-way interactions indicated that effects of substrate morphology and substrate area on phytofauna density or biomass were independent of environmental conditions outside and inside exclosures. ?? 2006 Springer Science+Business Media B.V.

Titan Polar Landscape Evolution

NASA Technical Reports Server (NTRS)

Moore, Jeffrey M.

2016-01-01

With the ongoing Cassini-era observations and studies of Titan it is clear that the intensity and distribution of surface processes (particularly fluvial erosion by methane and Aeolian transport) has changed through time. Currently however, alternate hypotheses substantially differ among specific scenarios with respect to the effects of atmospheric evolution, seasonal changes, and endogenic processes. We have studied the evolution of Titan's polar region through a combination of analysis of imaging, elevation data, and geomorphic mapping, spatially explicit simulations of landform evolution, and quantitative comparison of the simulated landscapes with corresponding Titan morphology. We have quantitatively evaluated alternate scenarios for the landform evolution of Titan's polar terrain. The investigations have been guided by recent geomorphic mapping and topographic characterization of the polar regions that are used to frame hypotheses of process interactions, which have been evaluated using simulation modeling. Topographic information about Titan's polar region is be based on SAR-Topography and altimetry archived on PDS, SAR-based stereo radar-grammetry, radar-sounding lake depth measurements, and superposition relationships between geomorphologic map units, which we will use to create a generalized topographic map.

Ferromagnetic resonance in a topographically modulated permalloy film

NASA Astrophysics Data System (ADS)

Sklenar, J.; Tucciarone, P.; Lee, R. J.; Tice, D.; Chang, R. P. H.; Lee, S. J.; Nevirkovets, I. P.; Heinonen, O.; Ketterson, J. B.

2015-04-01

A major focus within the field of magnonics involves the manipulation and control of spin-wave modes. This is usually done by patterning continuous soft magnetic films. Here, we report on work in which we use topographic modifications of a continuous magnetic thin film, rather than lithographic patterning techniques, to modify the ferromagnetic resonance spectrum. To demonstrate this technique we have performed in-plane, broadband, ferromagnetic resonance studies on a 100-nm-thick permalloy film sputtered onto a colloidal crystal with individual sphere diameters of 200 nm. Effects resulting from the, ideally, sixfold-symmetric underlying colloidal crystal were studied as a function of the in-plane field angle through experiment and micromagnetic modeling. Experimentally, we find two primary modes; the ratio of the intensities of these two modes exhibits a sixfold dependence. Detailed micromagnetic modeling shows that both modes are quasiuniform and nodeless in the unit cell but that they reside in different demagnetized regions of the unit cell. Our results demonstrate that topographic modification of magnetic thin films opens additional directions for manipulating ferromagnetic resonant excitations.

Topographic data requirements for EOS global change research

USGS Publications Warehouse

Gesch, Dean B.

1994-01-01

This document is a result of Earth Observing System Data and Information System (EOSDIS) Version 0 activities of the Land Processes Distributed Active Archive Center at the U.S. Geological Survey's EROS Data Center. A relatively small part of the Version 0 funding provided by NASA is used to address topographic data issues related to EOS. These issues include identifying and improving access to existing sources of topographic data, data generation, facilitating the use of topographic data in global change research by demonstrating derivative products, and inventorying the specific topographic data requirements of EOS investigators. There is a clear need for global topographic data in EOSDIS. Only 10 percent of the global land surface is covered by high-resolution data that are available to the global change science community. Alternative sources for new data exist or have been proposed; however, none of them alone can fulfill the data requirements by the launch of the first EOS platform in 4 years. There is no operational provider of all the source data that are required. Even if appropriate global source data existed, a concerted production effort would be necessary to ensure the existence of the requisite topographic data before EOS launch. Additionally, no funding from NASA or any other agency has been appropriated for a new mapping mission or for other means of data acquisition. This effort to document requirements is an initial step toward understanding the severity of the data shortage. It is well beyond the scope of Version 0 funding and capabilities to provide the required data in the proper timeframe. The shortage of data and the lack of a plan for providing the necessary topographic data through EOSDIS in time for launch are issues that must be addressed by the EOS program.

Fine resolution topographic mapping of the Jovian moons: a Ka-band high resolution topographic mapping interferometric synthetic aperture radar

NASA Technical Reports Server (NTRS)

Madsen, Soren N.; Carsey, Frank D.; Turtle, Elizabeth P.

2003-01-01

The topographic data set obtained by MOLA has provided an unprecedented level of information about Mars' geologic features. The proposed flight of JIMO provides an opportunity to accomplish a similar mapping of and comparable scientific discovery for the Jovian moons through us of an interferometric imaging radar analogous to the Shuttle radar that recently generated a new topographic map of Earth. A Ka-band single pass across-track synthetic aperture radar (SAR) interferometer can provide very high resolution surface elevation maps. The concept would use two antennas mounted at the ends of a deployable boom (similar to the Shuttle Radar Topographic Mapper) extended orthogonal to the direction of flight. Assuming an orbit altitude of approximately 100 km and a ground velocity of approximately 1.5 km/sec, horizontal resolutions at the 10 meter level and vertical resolutions at the sub-meter level are possible.

Fine Resolution Topographic Mapping of the Jovian Moons: A Ka-Band High Resolution Topographic Mapping Interferometric Synthetic Aperture Radar

NASA Technical Reports Server (NTRS)

Madsen, S. N.; Carsey, F. D.; Turtle, E. P.

2003-01-01

The topographic data set obtained by MOLA has provided an unprecedented level of information about Mars' geologic features. The proposed flight of JIMO provides an opportunity to accomplish a similar mapping of and comparable scientific discovery for the Jovian moons through use of an interferometric imaging radar analogous to the Shuttle radar that recently generated a new topographic map of Earth. A Ka-band single pass across-track synthetic aperture radar (SAR) interferometer can provide very high resolution surface elevation maps. The concept would use two antennas mounted at the ends of a deployable boom (similar to the Shuttle Radar Topographic Mapper) extended orthogonal to the direction of flight. Assuming an orbit altitude of approximately 100km and a ground velocity of approximately 1.5 km/sec, horizontal resolutions at the 10 meter level and vertical resolutions at the sub-meter level are possible.

Epitaxial hexagonal boron nitride on Ir(111): A work function template

NASA Astrophysics Data System (ADS)

Schulz, Fabian; Drost, Robert; Hämäläinen, Sampsa K.; Demonchaux, Thomas; Seitsonen, Ari P.; Liljeroth, Peter

2014-06-01

Hexagonal boron nitride (h-BN) is a prominent member in the growing family of two-dimensional materials with potential applications ranging from being an atomically smooth support for other two-dimensional materials to templating growth of molecular layers. We have studied the structure of monolayer h-BN grown by chemical vapor deposition on Ir(111) by low-temperature scanning tunneling microscopy (STM) and spectroscopy (STS) experiments and state-of-the-art density functional theory (DFT) calculations. The lattice mismatch between the h-BN and Ir(111) surface results in the formation of a moiré superstructure with a periodicity of ˜29 Å and a corrugation of ˜0.4 Å. By measuring the field emission resonances above the h-BN layer, we find a modulation of the work function within the moiré unit cell of ˜0.5 eV. DFT simulations for a 13-on-12 h-BN/Ir(111) unit cell confirm our experimental findings and allow us to relate the change in the work function to the subtle changes in the interaction between boron and nitrogen atoms and the underlying substrate atoms within the moiré unit cell. Hexagonal boron nitride on Ir(111) combines weak topographic corrugation with a strong work function modulation over the moiré unit cell. This makes h-BN/Ir(111) a potential substrate for electronically modulated thin film and heterosandwich structures.

An Investigation of Mechanically Tunable and Nanostructured Polymer Scaffolds for Directing Human Mesenchymal Stem Cell Development

NASA Astrophysics Data System (ADS)

Jaafar, Israd Hakim

This work investigated the use of biomedically relevant, polymer substrates for in vitro human mesenchymal stem cell (hMSC)-substrate surface interaction. Two materials were identified: (i) Poly(glycerol-sebacate) (PGS), a novel biocompatible and biodegradable thermosetting rubber-like elastomer, and (ii) injection molded polystyrene (PS). PGS was selected because it has tunable mechanical properties within the range of biological tissue, and thus provides a useful model to determine the types of substrate mechanical cues that would elicit specific hMSC lineage specification and possible differentiation outcomes. PS is a relevant material for in vitro cell-substrate surface interaction analysis since it is typically the base material of cell culture dishes. Both these materials have also shown micro to nanoscale molding capabilities. Hence these materials would also serve as a model in determining topographical properties (and related mechanical properties) at the dimension-scale of the extracellular environment that modulates hMSC state and fate. The work characterized, designed, and manufactured substrates made of these materials, for in vitro hMSC culture. Micro/nanoscale PGS and PS surface features were manufactured using silicon (Si) based tooling technology. The response of hMSCs to PGS substrates of various Young.s moduli was examined. hMSC response to a nanoscale array of PS pegs was also investigated. PGS was observed to be a semi-crystalline thermosetting elastomer that is fully amorphous above 35°C. The material acquired increasing stiffness and density of photoresist-coated with increasing levels of curing temperature and duration of cure. hMSCs were observed to respond differently on PGS with elastic modulii of 0.11, 1.11, and 2.30 MPa. The cells spread and proliferate more, and develop a stretched cytoskeleton on the stiffer substrates. On the softest substrate (0.11 MPa) the cells developed a branched and filopodia-rich morphology with a diffused actin cytoskeleton. PGS and a variety of other typical polymeric substrates such as poly(urethane) PU, poly(L-lactide-co-epsilon-caprolactone) PLCL, and poly(lactic-co-glycolic acid) PLGA, were found to produce its own fluorescence emission during fluorescence based imaging, which interfered in immunocytochemical (ICC) imaging and analysis of fluorescently labeled biomolecule structures of cells contacting these materials. The study successfully quenched this light interference by using Sudan Black, dye B (SB). Both PGS and PS sub-micron features and nanoscale peg arrays were successfully manufactured using Si based tooling technology. Cultures of hMSC on arrays of a nanopegged PS surface (400 nm diameter, 800 nm center-center, ˜ 200 nm high) revealed several interesting phenomena. The cells were observed to adhere to, migrate over, undergo mitosis, and interact over the nanopegged PS surface. The cells exhibited unique morphology in comparison to those cultured on commercial PS Petri dishes, and on flat injection molded PS templates. hMSCs on the nanopegs appear rounded, less spread out, and more motile with a filopodia-rich morphology.

Multi-surface topography targeted plateau honing for the processing of cylinder liner surfaces of automotive engines

NASA Astrophysics Data System (ADS)

Lawrence, K. Deepak; Ramamoorthy, B.

2016-03-01

Cylinder bores of automotive engines are 'engineered' surfaces that are processed using multi-stage honing process to generate multiple layers of micro geometry for meeting the different functional requirements of the piston assembly system. The final processed surfaces should comply with several surface topographic specifications that are relevant for the good tribological performance of the engine. Selection of the process parameters in three stages of honing to obtain multiple surface topographic characteristics simultaneously within the specification tolerance is an important module of the process planning and is often posed as a challenging task for the process engineers. This paper presents a strategy by combining the robust process design and gray-relational analysis to evolve the operating levels of honing process parameters in rough, finish and plateau honing stages targeting to meet multiple surface topographic specifications on the final running surface of the cylinder bores. Honing experiments were conducted in three stages namely rough, finish and plateau honing on cast iron cylinder liners by varying four honing process parameters such as rotational speed, oscillatory speed, pressure and honing time. Abbott-Firestone curve based functional parameters (Rk, Rpk, Rvk, Mr1 and Mr2) coupled with mean roughness depth (Rz, DIN/ISO) and honing angle were measured and identified as the surface quality performance targets to be achieved. The experimental results have shown that the proposed approach is effective to generate cylinder liner surface that would simultaneously meet the explicit surface topographic specifications currently practiced by the industry.

Mapping Alpine Vegetation Location Properties by Dense Matching

NASA Astrophysics Data System (ADS)

Niederheiser, Robert; Rutzinger, Martin; Lamprecht, Andrea; Steinbauer, Klaus; Winkler, Manuela; Pauli, Harald

2016-06-01

Highly accurate 3D micro topographic mapping in mountain research demands for light equipment and low cost solutions. Recent developments in structure from motion and dense matching techniques provide promising tools for such applications. In the following, the feasibility of terrestrial photogrammetry for mapping topographic location properties of sparsely vegetated areas in selected European mountain regions is investigated. Changes in species composition at alpine vegetation locations are indicators of climate change consequences, such as the pronounced rise of average temperatures in mountains compared to the global average. Better understanding of climate change effects on plants demand for investigations on a micro-topographic scale. We use professional and consumer grade digital single-lens reflex cameras mapping 288 plots each 3 x 3 m on 18 summits in the Alps and Mediterranean Mountains within the GLORIA (GLobal Observation Research Initiative in Alpine environments) network. Image matching tests result in accuracies that are in the order of millimetres in the XY-plane and below 0.5 mm in Z-direction at the second image pyramid level. Reconstructing vegetation proves to be a challenge due to its fine and small structured architecture and its permanent movement by wind during image acquisition, which is omnipresent on mountain summits. The produced 3D point clouds are gridded to 6 mm resolution from which topographic parameters such as slope, aspect and roughness are derived. At a later project stage these parameters will be statistically linked to botanical reference data in order to conclude on relations between specific location properties and species compositions.

Quantitative topographic differentiation of the neonatal EEG.

PubMed

Paul, Karel; Krajca, Vladimír; Roth, Zdenek; Melichar, Jan; Petránek, Svojmil

2006-09-01

To test the discriminatory topographic potential of a new method of the automatic EEG analysis in neonates. A quantitative description of the neonatal EEG can contribute to the objective assessment of the functional state of the brain, and may improve the precision of diagnosing cerebral dysfunctions manifested by 'disorganization', 'dysrhythmia' or 'dysmaturity'. 21 healthy, full-term newborns were examined polygraphically during sleep (EEG-8 referential derivations, respiration, ECG, EOG, EMG). From each EEG record, two 5-min samples (one from the middle of quiet sleep, the other from the middle of active sleep) were subject to subsequent automatic analysis and were described by 13 variables: spectral features and features describing shape and variability of the signal. The data from individual infants were averaged and the number of variables was reduced by factor analysis. All factors identified by factor analysis were statistically significantly influenced by the location of derivation. A large number of statistically significant differences were also established when comparing the effects of individual derivations on each of the 13 measured variables. Both spectral features and features describing shape and variability of the signal are largely accountable for the topographic differentiation of the neonatal EEG. The presented method of the automatic EEG analysis is capable to assess the topographic characteristics of the neonatal EEG, and it is adequately sensitive and describes the neonatal electroencephalogram with sufficient precision. The discriminatory capability of the used method represents a promise for their application in the clinical practice.

Visual spatial attention enhances the amplitude of positive and negative fMRI responses to visual stimulation in an eccentricity-dependent manner.

PubMed

Bressler, David W; Fortenbaugh, Francesca C; Robertson, Lynn C; Silver, Michael A

2013-06-07

Endogenous visual spatial attention improves perception and enhances neural responses to visual stimuli at attended locations. Although many aspects of visual processing differ significantly between central and peripheral vision, little is known regarding the neural substrates of the eccentricity dependence of spatial attention effects. We measured amplitudes of positive and negative fMRI responses to visual stimuli as a function of eccentricity in a large number of topographically-organized cortical areas. Responses to each stimulus were obtained when the stimulus was attended and when spatial attention was directed to a stimulus in the opposite visual hemifield. Attending to the stimulus increased both positive and negative response amplitudes in all cortical areas we studied: V1, V2, V3, hV4, VO1, LO1, LO2, V3A/B, IPS0, TO1, and TO2. However, the eccentricity dependence of these effects differed considerably across cortical areas. In early visual, ventral, and lateral occipital cortex, attentional enhancement of positive responses was greater for central compared to peripheral eccentricities. The opposite pattern was observed in dorsal stream areas IPS0 and putative MT homolog TO1, where attentional enhancement of positive responses was greater in the periphery. Both the magnitude and the eccentricity dependence of attentional modulation of negative fMRI responses closely mirrored that of positive responses across cortical areas. Copyright © 2013 Elsevier Ltd. All rights reserved.

On the influence of surface patterning on tissue self-assembly and mechanics.

PubMed

Coppola, Valerio; Ventre, Maurizio; Natale, Carlo F; Rescigno, Francesca; Netti, Paolo A

2018-04-28

Extracellular matrix assembly and composition influence the biological and mechanical functions of tissues. Developing strategies to control the spatial arrangement of cells and matrix is of central importance for tissue engineering-related approaches relying on self-assembling and scaffoldless processes. Literature reports demonstrated that signals patterned on material surfaces are able to control cell positioning and matrix orientation. However, the mechanisms underlying the interactions between material signals and the structure of the de novo synthesized matrix are far from being thoroughly understood. In this work, we investigated the ordering effect provided by nanoscale topographic patterns on the assembly of tissue sheets grown in vitro. We stimulated MC3T3-E1 preosteoblasts to produce and assemble a collagen-rich matrix on substrates displaying patterns with long- or short-range order. Then, we investigated microstructural features and mechanical properties of the tissue in uniaxial tension. Our results demonstrate that patterned material surfaces are able to control the initial organization of cells in close contact to the surface; then cell-generated contractile forces profoundly remodel tissue structure towards mechanically stable spatial patterns. Such a remodelling effect acts both locally, as it affects cell and nuclear shape and globally, by affecting the gross mechanical response of the tissue. Such an aspect of dynamic interplay between cells and the surrounding matrix must be taken into account when designing material platform for the in vitro generation of tissue with specific microstructural assemblies. Copyright © 2018 John Wiley & Sons, Ltd.

An algorithm for treating flat areas and depressions in digital elevation models using linear interpolation

Treesearch

F. Pan; M. Stieglitz; R.B. McKane

2012-01-01

Digital elevation model (DEM) data are essential to hydrological applications and have been widely used to calculate a variety of useful topographic characteristics, e.g., slope, flow direction, flow accumulation area, stream channel network, topographic index, and others. Except for slope, none of the other topographic characteristics can be calculated until the flow...

Laser-ranging scanning system to observe topographical deformations of volcanoes.

PubMed

Aoki, T; Takabe, M; Mizutani, K; Itabe, T

1997-02-20

We have developed a laser-ranging system to observe the topographical structure of volcanoes. This system can be used to measure the distance to a target by a laser and shows the three-dimensional topographical structure of a volcano with an accuracy of 30 cm. This accuracy is greater than that of a typical laser-ranging system that uses a corner-cube reflector as a target because the reflected light jitters as a result of inclination and unevenness of the target ground surface. However, this laser-ranging system is useful for detecting deformations of topographical features in which placement of a reflector is difficult, such as in volcanic regions.

[Computer optical topography: a study of the repeatability of the results of human body model examination].

PubMed

Sarnadskiĭ, V N

2007-01-01

The problem of repeatability of the results of examination of a plastic human body model is considered. The model was examined in 7 positions using an optical topograph for kyphosis diagnosis. The examination was performed under television camera monitoring. It was shown that variation of the model position in the camera view affected the repeatability of the results of topographic examination, especially if the model-to-camera distance was changed. A study of the repeatability of the results of optical topographic examination can help to increase the reliability of the topographic method, which is widely used for medical screening of children and adolescents.

Topographic Change of the Dichotomy Boundary Suggested by Crustal Inversion

NASA Technical Reports Server (NTRS)

Neumann, G. A.

2004-01-01

Linear negative gravity anomalies in Acidalia Planitia along the eastern edge of Tempe Terra and along the northern edge of Arabia Terra have been noted in Mars Global Surveyor gravity fields. Once proposed to represent buried fluvial channels, it is now believed that these gravity troughs mainly arise from partial compensation of the hemispheric dichotomy topographic scarp. A recent inversion for crustal structure finds that mantle compensation of the scarp is offset from the present-day topographic expression of the dichotomy boundary. The offset suggests that erosion or other forms of mass wasting occurred after lithosphere thickened and no longer accomodated topographic change through viscous relaxation.

Engineered peptide-based nanobiomaterials for electrochemical cell chip.

PubMed

Kafi, Md Abdul; Cho, Hyeon-Yeol; Choi, Jeong-Woo

2016-01-01

Biomaterials having cell adhesion ability are considered to be integral part of a cell chip. A number of researches have been carried out to search for a suitable material for effective immobilization of cell on substrate. Engineered ECM materials or their components like collagen, Poly-l-Lysine (PLL), Arg-Gly-Asp (RGD) peptide have been extensively used for mammalian cell adhesion and proliferation with the aim of tissue regeneration or cell based sensing application. This review focuses on the various approaches for two- and three-dimensionally patterned nanostructures of a short peptide i.e. RGD peptide on chip surfaces together with their effects on cell behaviors and electrochemical measurements. Most of the study concluded with positive remarks on the well-oriented engineered RGD peptide over their homogenous thin film. The engineered RGD peptide not only influences cell adhesion, spreading and proliferation but also their periodic nano-arrays directly influence electrochemical measurements of the chips. The electrochemical signals found to be enhanced when RGD peptides were used in well-defined two-dimensional nano-arrays. The topographic alteration of three-dimensional structure of engineered RGD peptide was reported to be suitably contacted with the integrin receptors of cellular membrane which results indicated the enhanced cell-electrode adhesion and efficient electron exchange phenomenon. This enhanced electrochemical signal increases the sensitivity of the chip against the target analytes. Therefore, development of engineered cellular recognizable peptides and its 3D topological design for fabrication of cell chip will provide the synergetic effect on bio-affinity, sensitivity and accuracy for the in situ real-time monitoring of analytes.

The Effect of Five Biomass Cropping Systems on Soil-Saturated Hydraulic Conductivity Across a Topographic Gradient

Treesearch

Usman Anwar; Lisa A. Schulte; Matthew Helmers; Randall K. Kolka

2017-01-01

Understanding the environmental impact of bioenergy crops is needed to inform bioenergy policy development. We determined the effects of five biomass cropping systems—continuous maize (Zea mays), soybean (Glycine max)-triticale (Triticosecale ×)/soybean-maize, maize-switchgrass (Panicum virgatum...

The Global Positioning System

USGS Publications Warehouse

,

1999-01-01

The Global Positioning System (GPS) is a constellation of navigation satellites called Navigation Satellite Timing And Ranging (NAVSTAR), maintained by the U.S. Department of Defense. Many outdoor enthusiasts recognize that a handheld GPS receiver can be an accurate tool for determining their location on the terrain. The GPS receiver helps determine locations on the Earth's surface by collecting signals from three or more satellites through a process called triangulation. Identifying a location on the Earth is more useful if you also know about the surrounding topographic conditions. Using a topographic map with the GPS receiver provides important information about features of the surrounding terrain and can help you plot an effective route from one location to another.

Topological helical edge states in water waves over a topographical bottom

NASA Astrophysics Data System (ADS)

Wu, Shiqiao; Wu, Ying; Mei, Jun

2018-02-01

We present the discovery of topologically protected helical edge states in water wave systems, which are realized in water wave propagating over a topographical bottom whose height is modulated periodically in a two-dimensional triangular pattern. We develop an effective Hamiltonian to characterize the dispersion relation and use spin Chern numbers to classify the topology. Through full-wave simulations we unambiguously demonstrate the robustness of the helical edge states which are immune to defects and disorders so that the backscattering loss is significantly reduced. A spin splitter is designed for water wave systems, where helical edge states with different spin orientations are spatially separated with each other, and potential applications are discussed.

Feedbacks Between Topographic Stress and Drainage Basin Evolution

NASA Astrophysics Data System (ADS)

Perron, J.; Martel, S. J.; Singha, K.; Slim, M. I.

2013-12-01

Theoretical calculations imply that stresses produced by gravity acting on topography may be large enough in some scenarios to fracture rock. Predicted stress fields beneath ridges and valleys can differ dramatically, which has led several authors to hypothesize feedbacks between topographic stress, rock fracture and landscape evolution. However, there have been few attempts to explore these feedbacks. We use a coupled model to identify possible feedbacks between topographic stress and drainage basin evolution. The domain is a cross-section of a valley consisting of a bedrock channel and adjacent soil-mantled hillslopes. The bedrock surface evolves due to channel incision, soil production, and rock uplift, and soil thickness evolves due to soil production and transport. Plane stresses at and below the bedrock surface are calculated with a boundary element method that accounts for both ambient tectonic stress and topographic stress. We assume that the stress field experienced by rock as it is exhumed influences the likelihood that it will develop fractures, which make the rock more susceptible to weathering, disaggregation and erosion. A measure of susceptibility to shear fracture, the most likely failure mode under regional compression, serves as a proxy for rock damage. We couple the landscape evolution model to the stress model by assuming that rock damage accelerates the rates of soil production and channel incision, with two endmember cases: rates scale with the magnitude of the damage proxy at the bedrock surface, or with cumulative damage acquired during rock exhumation. The stress-induced variations in soil production and channel incision alter the soil thickness and topography, which in turn alter the stress field. Comparing model simulations with and without these feedbacks, we note several predicted consequences of topographic stress for drainage basin evolution. Rock damage is typically focused at or near the foot of hillslopes, which creates thicker soils near the valley bottom than near the ridgetop. This gradient in soil thickness is largest, and the thickest soil furthest downslope, if most rock damage is assumed to occur near the surface. Ambient tectonic stress also has a strong effect on hillslopes, with more compressive horizontal stress steepening the soil thickness gradient and displacing the thickest soil farther downslope. Rock damage in the valley bottom scales with valley depth, creating a positive feedback between relief and channel incision. This produces higher relief during transient channel incision, but steady-state relief is insensitive to stress effects because the positive feedback is limited by reduction of the channel slope. However, the fact that valleys are typically deepest in the middle of a drainage basin implies that channel profiles will be more concave if stresses enhance channel incision. Observational tests of these qualitative predictions will help evaluate the significance of suspected feedbacks between topographic stress and landscape evolution.

Direct vs. Microclimate-Driven Effects of Tree Species Diversity on Litter Decomposition in Young Subtropical Forest Stands.

PubMed

Seidelmann, Katrin N; Scherer-Lorenzen, Michael; Niklaus, Pascal A

2016-01-01

Effects of tree species diversity on decomposition can operate via a multitude of mechanism, including alterations of microclimate by the forest canopy. Studying such effects in natural settings is complicated by the fact that topography also affects microclimate and thus decomposition, so that effects of diversity are more difficult to isolate. Here, we quantified decomposition rates of standard litter in young subtropical forest stands, separating effects of canopy tree species richness and topography, and quantifying their direct and micro-climate-mediated components. Our litterbag study was carried out at two experimental sites of a biodiversity-ecosystem functioning field experiment in south-east China (BEF-China). The field sites display strong topographical heterogeneity and were planted with tree communities ranging from monocultures to mixtures of 24 native subtropical tree species. Litter bags filled with senescent leaves of three native tree species were placed from Nov. 2011 to Oct. 2012 on 134 plots along the tree species diversity gradient. Topographic features were measured for all and microclimate in a subset of plots. Stand species richness, topography and microclimate explained important fractions of the variations in litter decomposition rates, with diversity and topographic effects in part mediated by microclimatic changes. Tree stands were 2-3 years old, but nevertheless tree species diversity explained more variation (54.3%) in decomposition than topography (7.7%). Tree species richness slowed litter decomposition, an effect that slightly depended on litter species identity. A large part of the variance in decomposition was explained by tree species composition, with the presence of three tree species playing a significant role. Microclimate explained 31.4% of the variance in decomposition, and was related to lower soil moisture. Within this microclimate effect, species diversity (without composition) explained 8.9% and topography 34.4% of variance. Topography mainly affected diurnal temperature amplitudes by varying incident solar radiation.

Direct vs. Microclimate-Driven Effects of Tree Species Diversity on Litter Decomposition in Young Subtropical Forest Stands

PubMed Central

Seidelmann, Katrin N.; Scherer-Lorenzen, Michael; Niklaus, Pascal A.

2016-01-01

Effects of tree species diversity on decomposition can operate via a multitude of mechanism, including alterations of microclimate by the forest canopy. Studying such effects in natural settings is complicated by the fact that topography also affects microclimate and thus decomposition, so that effects of diversity are more difficult to isolate. Here, we quantified decomposition rates of standard litter in young subtropical forest stands, separating effects of canopy tree species richness and topography, and quantifying their direct and micro-climate-mediated components. Our litterbag study was carried out at two experimental sites of a biodiversity-ecosystem functioning field experiment in south-east China (BEF-China). The field sites display strong topographical heterogeneity and were planted with tree communities ranging from monocultures to mixtures of 24 native subtropical tree species. Litter bags filled with senescent leaves of three native tree species were placed from Nov. 2011 to Oct. 2012 on 134 plots along the tree species diversity gradient. Topographic features were measured for all and microclimate in a subset of plots. Stand species richness, topography and microclimate explained important fractions of the variations in litter decomposition rates, with diversity and topographic effects in part mediated by microclimatic changes. Tree stands were 2–3 years old, but nevertheless tree species diversity explained more variation (54.3%) in decomposition than topography (7.7%). Tree species richness slowed litter decomposition, an effect that slightly depended on litter species identity. A large part of the variance in decomposition was explained by tree species composition, with the presence of three tree species playing a significant role. Microclimate explained 31.4% of the variance in decomposition, and was related to lower soil moisture. Within this microclimate effect, species diversity (without composition) explained 8.9% and topography 34.4% of variance. Topography mainly affected diurnal temperature amplitudes by varying incident solar radiation. PMID:27490180

Estimating continuous floodplain and major river bed topography mixing ordinal coutour lines and topographic points

NASA Astrophysics Data System (ADS)

Bailly, J. S.; Dartevelle, M.; Delenne, C.; Rousseau, A.

2017-12-01

Floodplain and major river bed topography govern many river biophysical processes during floods. Despite the grow of direct topographic measurements from LiDARS on riverine systems, it still room to develop methods for large (e.g. deltas) or very local (e.g. ponds) riverine systems that take advantage of information coming from simple SAR or optical image processing on floodplain, resulting from waterbodies delineation during flood up or down, and producing ordered coutour lines. The next challenge is thus to exploit such data in order to estimate continuous topography on the floodplain combining heterogeneous data: a topographic points dataset and a located but unknown and ordered contourline dataset. This article is comparing two methods designed to estimate continuous topography on the floodplain mixing ordinal coutour lines and continuous topographic points. For both methods a first estimation step is to value each contourline with elevation and a second step is next to estimate the continuous field from both topographic points and valued contourlines. The first proposed method is a stochastic method starting from multigaussian random-fields and conditional simualtion. The second is a deterministic method based on radial spline fonction for thin layers used for approximated bivariate surface construction. Results are first shown and discussed from a set of synoptic case studies presenting various topographic points density and topographic smoothness. Next, results are shown and discuss on an actual case study in the Montagua laguna, located in the north of Valparaiso, Chile.

Estimating continuous floodplain and major river bed topography mixing ordinal coutour lines and topographic points

NASA Astrophysics Data System (ADS)

Brown, T. G.; Lespez, L.; Sear, D. A.; Houben, P.; Klimek, K.

2016-12-01

Floodplain and major river bed topography govern many river biophysical processes during floods. Despite the grow of direct topographic measurements from LiDARS on riverine systems, it still room to develop methods for large (e.g. deltas) or very local (e.g. ponds) riverine systems that take advantage of information coming from simple SAR or optical image processing on floodplain, resulting from waterbodies delineation during flood up or down, and producing ordered coutour lines. The next challenge is thus to exploit such data in order to estimate continuous topography on the floodplain combining heterogeneous data: a topographic points dataset and a located but unknown and ordered contourline dataset. This article is comparing two methods designed to estimate continuous topography on the floodplain mixing ordinal coutour lines and continuous topographic points. For both methods a first estimation step is to value each contourline with elevation and a second step is next to estimate the continuous field from both topographic points and valued contourlines. The first proposed method is a stochastic method starting from multigaussian random-fields and conditional simualtion. The second is a deterministic method based on radial spline fonction for thin layers used for approximated bivariate surface construction. Results are first shown and discussed from a set of synoptic case studies presenting various topographic points density and topographic smoothness. Next, results are shown and discuss on an actual case study in the Montagua laguna, located in the north of Valparaiso, Chile.

Validating a topographically driven model of peatland water table: Implications for understanding land cover controls on water table.

NASA Astrophysics Data System (ADS)

Evans, Martin; Allott, Tim; Worrall, Fred; Rowson, James; Maskill, Rachael

2014-05-01

Water table is arguably the dominant control on biogeochemical cycling in peatland systems. Local water tables are controlled by peat surface water balance and lateral transfer of water driven by slope can be a significant component of this balance. In particular, blanket peatlands typically have relatively high surface slope compared to other peatland types so that there is the potential for water table to be significantly contolled by topographic context. UK blanket peatlands are also significantly eroded so that there is the potential for additional topographic drainage of the peatland surface. This paper presents a topographically driven model of blanket peat water table. An initial model presented in Allott et al. (2009) has been refined and tested against further water table data collected across the Bleaklow and Kinderscout plateaux of the English Peak District. The water table model quantifies the impact of peat erosion on water table throughout this dramatically dissected landscape demonstrating that almost 50% of the landscape has suffered significant water table drawdown. The model calibrates the impact of slope and degree of dissection on local water tables but does not incorporate any effects of surface cover on water table conditions. Consequently significant outliers in the test data are potentially indicative of important impacts of surface cover on water table conditions. In the test data presented here sites associated with regular moorland burning are significant outliers. The data currently available do not allow us to draw conclusions around the impact of land cover but they indicate an important potential application of the validated model in controlling for topographic position in further testing of the impact of land cover on peatland water tables. Allott, T.E.H. & Evans, M.G., Lindsay, J.B., Agnew, C.T., Freer, J.E., Jones, A. & Parnell, M. Water tables in Peak District blanket peatlands. Moors for the Future Report No. 17. Moors for the Future Partnership, Edale, 47pp.

Assessment of tilt and decentration of crystalline lens and intraocular lens relative to the corneal topographic axis using anterior segment optical coherence tomography

PubMed Central

Morizane, Yuki; Shiode, Yusuke; Hirano, Masayuki; Doi, Shinichiro; Toshima, Shinji; Fujiwara, Atsushi; Shiraga, Fumio

2017-01-01

Purpose To investigate the tilt and decentration of the crystalline lens and the intraocular lens (IOL) relative to the corneal topographic axis using anterior segment ocular coherence tomography (AS-OCT). Methods A sample set of 100 eyes from 49 subjects (41 eyes with crystalline lenses and 59 eyes with IOLs) were imaged using second generation AS-OCT (CASIA2, TOMEY) in June and July 2016 at Okayama University. Both mydriatic and non-mydriatic images were obtained, and the tilt and decentration of the crystalline lens and the IOL were quantified. The effects of pupil dilation on measurements were also assessed. Results The crystalline lens showed an average tilt of 5.15° towards the inferotemporal direction relative to the corneal topographic axis under non-mydriatic conditions and 5.25° under mydriatic conditions. Additionally, an average decentration of 0.11 mm towards the temporal direction was observed under non-mydriatic conditions and 0.08 mm under mydriatic conditions. The average tilt for the IOL was 4.31° towards the inferotemporal direction relative to the corneal topographic axis under non-mydriatic conditions and 4.65° in the same direction under mydriatic conditions. The average decentration was 0.05 mm towards the temporal direction under non-mydriatic conditions and 0.08 mm in the same direction under mydriatic conditions. A strong correlation was found between the average tilt and decentration values of the crystalline lens and the IOL under both non-mydriatic and mydriatic conditions (all Spearman correlation coefficients, r ≥ 0.800; all P < 0.001). Conclusion When measured using second generation AS-OCT, both the crystalline lens and the IOL showed an average tilt of 4–6° toward the inferotemporal direction relative to the corneal topographic axis and an average decentration of less than 0.12 mm towards the temporal direction. These results were not influenced by pupil dilation and they showed good repeatability. PMID:28863141

Assessment of tilt and decentration of crystalline lens and intraocular lens relative to the corneal topographic axis using anterior segment optical coherence tomography.

PubMed

Kimura, Shuhei; Morizane, Yuki; Shiode, Yusuke; Hirano, Masayuki; Doi, Shinichiro; Toshima, Shinji; Fujiwara, Atsushi; Shiraga, Fumio

2017-01-01

To investigate the tilt and decentration of the crystalline lens and the intraocular lens (IOL) relative to the corneal topographic axis using anterior segment ocular coherence tomography (AS-OCT). A sample set of 100 eyes from 49 subjects (41 eyes with crystalline lenses and 59 eyes with IOLs) were imaged using second generation AS-OCT (CASIA2, TOMEY) in June and July 2016 at Okayama University. Both mydriatic and non-mydriatic images were obtained, and the tilt and decentration of the crystalline lens and the IOL were quantified. The effects of pupil dilation on measurements were also assessed. The crystalline lens showed an average tilt of 5.15° towards the inferotemporal direction relative to the corneal topographic axis under non-mydriatic conditions and 5.25° under mydriatic conditions. Additionally, an average decentration of 0.11 mm towards the temporal direction was observed under non-mydriatic conditions and 0.08 mm under mydriatic conditions. The average tilt for the IOL was 4.31° towards the inferotemporal direction relative to the corneal topographic axis under non-mydriatic conditions and 4.65° in the same direction under mydriatic conditions. The average decentration was 0.05 mm towards the temporal direction under non-mydriatic conditions and 0.08 mm in the same direction under mydriatic conditions. A strong correlation was found between the average tilt and decentration values of the crystalline lens and the IOL under both non-mydriatic and mydriatic conditions (all Spearman correlation coefficients, r ≥ 0.800; all P < 0.001). When measured using second generation AS-OCT, both the crystalline lens and the IOL showed an average tilt of 4-6° toward the inferotemporal direction relative to the corneal topographic axis and an average decentration of less than 0.12 mm towards the temporal direction. These results were not influenced by pupil dilation and they showed good repeatability.

Exploring new topography-based subgrid spatial structures for improving land surface modeling

DOE PAGES

Tesfa, Teklu K.; Leung, Lai-Yung Ruby

2017-02-22

Topography plays an important role in land surface processes through its influence on atmospheric forcing, soil and vegetation properties, and river network topology and drainage area. Land surface models with a spatial structure that captures spatial heterogeneity, which is directly affected by topography, may improve the representation of land surface processes. Previous studies found that land surface modeling, using subbasins instead of structured grids as computational units, improves the scalability of simulated runoff and streamflow processes. In this study, new land surface spatial structures are explored by further dividing subbasins into subgrid structures based on topographic properties, including surface elevation,more » slope and aspect. Two methods (local and global) of watershed discretization are applied to derive two types of subgrid structures (geo-located and non-geo-located) over the topographically diverse Columbia River basin in the northwestern United States. In the global method, a fixed elevation classification scheme is used to discretize subbasins. The local method utilizes concepts of hypsometric analysis to discretize each subbasin, using different elevation ranges that also naturally account for slope variations. The relative merits of the two methods and subgrid structures are investigated for their ability to capture topographic heterogeneity and the implications of this on representations of atmospheric forcing and land cover spatial patterns. Results showed that the local method reduces the standard deviation (SD) of subgrid surface elevation in the study domain by 17 to 19 % compared to the global method, highlighting the relative advantages of the local method for capturing subgrid topographic variations. The comparison between the two types of subgrid structures showed that the non-geo-located subgrid structures are more consistent across different area threshold values than the geo-located subgrid structures. Altogether the local method and non-geo-located subgrid structures effectively and robustly capture topographic, climatic and vegetation variability, which is important for land surface modeling.« less

Morphometric analysis of landslide in the Mountain Region of the State of Rio de Janeiro in Brazi: the case study of D'anta's watershed

NASA Astrophysics Data System (ADS)

Carvalho Araújo, João Paulo; da Silva, Lúcia Maria; Avear, Marcello; Dourado, Francisco; Ferreira Fernandes, Nelson

2013-04-01

Mass movements are recurrent phenomena in the whole Mountain Region of the State of Rio de Janeiro in Brazil. These events actively participate in the relief evolution and are also responsible for many damages and loss of human lives. The triggering of these events depends on the natural environment and the preparatory and immediate action of the physical, biotic and human agents responsible for these processes. This work is based on the hypothesis in which the topographical conditions have a major effect on the spatial distribution of translational landslides caused by decreased of the internal resistance of the material mobilized. Therefore, the purpose of this study is to identify the topographical conditions favorable to landslide triggering based on morphometric analysis in a pilot watershed - D'antás watershed - located in the mountainous region of the State of Rio de Janeiro. The indices include the topographic wetness index (TWI), contributing area, slope angle and elevation and were derived from 5-m grid digital terrain model, computed on a Geographic Information System (GIS). The maps produced allowed the analysis of topographic influence on the landslides distribution from the indices of frequency classes (F), concentration of scars (CC) and potential of landslide (PL). The landscape sectors that are more likely to be affected by landslides were the ones where the elevation ranges from 1070m - 1187m, slope angle between 40.95° and 47.77°, contributing area between (log10) 1.32 m² - 1.95 m² and topographic wetness index between 7.11 to 9.59. This work provides important information which may help in the decision-making process, using fewer data and indices of easy application. Finally, the results obtained will subsidize of a landslide susceptibility map through the implementation of the conditional probability method aimed at predicting and mitigating of the damage caused by landslides.

Exploring new topography-based subgrid spatial structures for improving land surface modeling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tesfa, Teklu K.; Leung, Lai-Yung Ruby

Topography plays an important role in land surface processes through its influence on atmospheric forcing, soil and vegetation properties, and river network topology and drainage area. Land surface models with a spatial structure that captures spatial heterogeneity, which is directly affected by topography, may improve the representation of land surface processes. Previous studies found that land surface modeling, using subbasins instead of structured grids as computational units, improves the scalability of simulated runoff and streamflow processes. In this study, new land surface spatial structures are explored by further dividing subbasins into subgrid structures based on topographic properties, including surface elevation,more » slope and aspect. Two methods (local and global) of watershed discretization are applied to derive two types of subgrid structures (geo-located and non-geo-located) over the topographically diverse Columbia River basin in the northwestern United States. In the global method, a fixed elevation classification scheme is used to discretize subbasins. The local method utilizes concepts of hypsometric analysis to discretize each subbasin, using different elevation ranges that also naturally account for slope variations. The relative merits of the two methods and subgrid structures are investigated for their ability to capture topographic heterogeneity and the implications of this on representations of atmospheric forcing and land cover spatial patterns. Results showed that the local method reduces the standard deviation (SD) of subgrid surface elevation in the study domain by 17 to 19 % compared to the global method, highlighting the relative advantages of the local method for capturing subgrid topographic variations. The comparison between the two types of subgrid structures showed that the non-geo-located subgrid structures are more consistent across different area threshold values than the geo-located subgrid structures. Altogether the local method and non-geo-located subgrid structures effectively and robustly capture topographic, climatic and vegetation variability, which is important for land surface modeling.« less

Topography may mitigate drought effects on vegetation along a hillslope gradient

Treesearch

Sandra Hawthorne; Chelcy Ford Miniat

2017-01-01

Topography may mitigate drought effects on vegetation along a hillslope gradient through redistribution of soil moisture. We examined the interaction of topography, climate, soil moisture, and transpiration in a low‐elevation, mixed‐hardwood forest in the southern Appalachian Mountains. The effects of meteorological variation (wet and dry years) and topographic...

Numerical modeling techniques for flood analysis

NASA Astrophysics Data System (ADS)

Anees, Mohd Talha; Abdullah, K.; Nawawi, M. N. M.; Ab Rahman, Nik Norulaini Nik; Piah, Abd. Rahni Mt.; Zakaria, Nor Azazi; Syakir, M. I.; Mohd. Omar, A. K.

2016-12-01

Topographic and climatic changes are the main causes of abrupt flooding in tropical areas. It is the need to find out exact causes and effects of these changes. Numerical modeling techniques plays a vital role for such studies due to their use of hydrological parameters which are strongly linked with topographic changes. In this review, some of the widely used models utilizing hydrological and river modeling parameters and their estimation in data sparse region are discussed. Shortcomings of 1D and 2D numerical models and the possible improvements over these models through 3D modeling are also discussed. It is found that the HEC-RAS and FLO 2D model are best in terms of economical and accurate flood analysis for river and floodplain modeling respectively. Limitations of FLO 2D in floodplain modeling mainly such as floodplain elevation differences and its vertical roughness in grids were found which can be improve through 3D model. Therefore, 3D model was found to be more suitable than 1D and 2D models in terms of vertical accuracy in grid cells. It was also found that 3D models for open channel flows already developed recently but not for floodplain. Hence, it was suggested that a 3D model for floodplain should be developed by considering all hydrological and high resolution topographic parameter's models, discussed in this review, to enhance the findings of causes and effects of flooding.

Effect of Substrate and Process Parameters on the Gas-Substrate Convective Heat Transfer Coefficient During Cold Spraying

NASA Astrophysics Data System (ADS)

Mahdavi, Amirhossein; McDonald, André

2018-02-01

The final quality of cold-sprayed coatings can be significantly influenced by gas-substrate heat exchange, due to the dependence of the deposition efficiency of the particles on the substrate temperature distribution. In this study, the effect of the air temperature and pressure, as process parameters, and surface roughness and thickness, as substrate parameters, on the convective heat transfer coefficient of the impinging air jet was investigated. A low-pressure cold spraying unit was used to generate a compressed air jet that impinged on a flat substrate. A comprehensive mathematical model was developed and coupled with experimental data to estimate the heat transfer coefficient and the surface temperature of the substrate. The effect of the air total temperature and pressure on the heat transfer coefficient was studied. It was found that increasing the total pressure would increase the Nusselt number of the impinging air jet, while total temperature of the air jet had negligible effect on the Nusslet number. It was further found that increasing the roughness of the substrate enhanced the heat exchange between the impinging air jet and the substrate. As a result, higher surface temperatures on the rough substrate were measured. The study of the effect of the substrate thickness on the heat transfer coefficient showed that the Nusselt number that was predicted by the model was independent of the thickness of the substrate. The surface temperature profile, however, decreased in increasing radial distances from the stagnation point of the impinging jet as the thickness of the substrate increased. The results of the current study were aimed to inform on the influence and effect of substrate and process parameters on the gas-substrate heat exchange and the surface temperature of the substrate on the final quality of cold-sprayed coatings.

Relations among geology, physiography, land use, and stream habitat conditions in the Buffalo and Current River Systems, Missouri and Arkansas

USGS Publications Warehouse

Panfil, Maria S.; Jacobson, Robert B.

2001-01-01

This study investigated links between drainage-basin characteristics and stream habitat conditions in the Buffalo National River, Arkansas and the Ozark National Scenic Riverways, Missouri. It was designed as an associative study - the two parks were divided into their principle tributary drainage basins and then basin-scale and stream-habitat data sets were gathered and compared between them. Analyses explored the relative influence of different drainage-basin characteristics on stream habitat conditions. They also investigated whether a relation between land use and stream characteristics could be detected after accounting for geologic and physiographic differences among drainage basins. Data were collected for three spatial scales: tributary drainage basins, tributary stream reaches, and main-stem river segments of the Current and Buffalo Rivers. Tributary drainage-basin characteristics were inventoried using a Geographic Information System (GIS) and included aspects of drainage-basin physiography, geology, and land use. Reach-scale habitat surveys measured channel longitudinal and cross-sectional geometry, substrate particle size and embeddedness, and indicators of channel stability. Segment-scale aerial-photo based inventories measured gravel-bar area, an indicator of coarse sediment load, along main-stem rivers. Relations within and among data sets from each spatial scale were investigated using correlation analysis and multiple linear regression. Study basins encompassed physiographically distinct regions of the Ozarks. The Buffalo River system drains parts of the sandstone-dominated Boston Mountains and of the carbonate-dominated Springfield and Salem Plateaus. The Current River system is within the Salem Plateau. Analyses of drainage-basin variables highlighted the importance of these physiographic differences and demonstrated links among geology, physiography, and land-use patterns. Buffalo River tributaries have greater relief, steeper slopes, and more streamside bluffs than the Current River tributaries. Land use patterns in both river systems correlate with physiography - cleared land area is negatively associated with drainage-basin average slope. Both river systems are dominantly forested (0-35 per-cent cleared land), however, the potential for landscape disturbance may be greater in the Buffalo River system where a larger proportion of cleared land occurs on steep slopes (>15 degrees). When all drainage basins are grouped together, reach-scale channel characteristics show the strongest relations with drainage-basin physiography. Bankfull channel geometry and residual pool dimensions are positively correlated with drainage area and topographic relief variables. After accounting for differences in drainage area, channel dimensions in Buffalo River tributaries tend to be larger than in Current River tributaries. This trend is consistent with the flashy runoff and large storm flows that can be generated in rugged, sandstone-dominate terrain. Substrate particle size is also most strongly associated with physiography; particle size is positively correlated with topographic relief variables. When tributaries are subset by river system, relations with geology and land use variables become apparent. Buffalo River tributaries with larger proportions of carbonate bedrock and cleared land area have shallower channels, better-sorted, gravel-rich substrate, and more eroding banks than those with little cleared land and abundant sandstone bedrock. Gravel-bar area on the Buffalo River main stem was also larger within 1-km of carbonate-rich tributary junctions. Because geology and cleared land are themselves correlated, relations with anthropogenic and natural factors could often not be separated. Channel characteristics in the Current River system show stronger associations with physiography than with land use. Channels are shallower and have finer substrates in the less rugged, karst-rich, western basins than in the

15 CFR Appendix B to Subpart L of... - Coordinates for the Department of the Interior Topographic Lease Stipulations for OCS Lease Sale 171

Code of Federal Regulations, 2010 CFR

2010-01-01

... Interior Topographic Lease Stipulations for OCS Lease Sale 171 B Appendix B to Subpart L of Part 922... MARINE SANCTUARY PROGRAM REGULATIONS Flower Garden Banks National Marine Sanctuary Pt. 922, Subpt. L, App. B Appendix B to Subpart L of Part 922—Coordinates for the Department of the Interior Topographic...

Application of carbon nanotubes to topographical resolution enhancement of tapered fiber scanning near field optical microscopy probes

NASA Astrophysics Data System (ADS)

Huntington, S. T.; Jarvis, S. P.

2003-05-01

Scanning near field optical microscopy (SNOM) probes are typically tapered optical fibers with metallic coatings. The tip diameters are generally in excess of 300 nm and thus provide poor topographical resolution. Here we report on the attachment multiwalled carbon nanotubes to the probes in order to substantially enhance the topographical resolution, without adversely affecting the optical resolution.

Establish Effective Lower Bounds of Watershed Slope for Traditional Hydrologic Methods

DOT National Transportation Integrated Search

2012-06-01

Equations to estimate timing parameters for a watershed contain watershed slope as a principal parameter and : estimates are usually inversely proportional to topographic slope. Hence as slope vanishes, the estimates approach : infinity. The research...

Radiosonde and satellite observations of topographic flow off the Norwegian coast

NASA Astrophysics Data System (ADS)

Rugaard Furevik, Birgitte; Dagestad, Knut-Frode; Olafsson, Haraldur

2015-04-01

Winds in Norway are strongly affected by the complex topography and in some areas the average wind speed in the fjords may exceed those on the coast. Such effects are revealed through a statistical analysis derived wind speed from ~8500 Synthetic Aperture Radar (SAR) scenes covering the Norwegian coast. We have compared the results with modelled winds from the operational atmosphere model at MET (horizontal grid spacing of 2.5km) and 3 years of measurements from "M/S Trollfjord", a ferry traversing a 2400km coastal route between the cities Bergen and Kirkenes. The analysis reveals many coastal details of the wind field not observed from the meteorological station network of Norway. The data set proves useful for verification of offshore winds in the model. High temporal resolution radiosonde winds from two locations are used to analyse the topographic effects.

Topographic Features of Malyy Naryn River Watershed Based on Different Data

NASA Astrophysics Data System (ADS)

Li, M.; Chen, L.; Cui, Y.; Zhang, M.

2018-04-01

This paper researched the influence on the topographical characteristics of watersheds by setting different catchment area thresholds based on different data sets, namely ZY3 DSM, SRTM DEM and ASTER GDEM. Slope, hypsometric integral, river network density and river network discrepancy are analyzed and compared. The results are as follows: a) Three data sets all can express the same rough terrain characteristics and the same degree of watershed topography development; b) ZY3 DSM can reflect terrain information over the Malyy Naryn River watershed in most detail and it has the best expression effect on the terrain among the three data sets of ZY3 DSM, SRTM DEM and ASTER GDEM, followed by SRTM DEM, and the effect of ASTER GDEM is the worst; c) The similarity of river networks extracted by ZY3 DSM and SRTM DEM is the highest, and the similarity between ZY3 DSM and ASTER GDEM is the lowest one.

Exploring the Influence of Topographic Correction and SWIR Spectral Information Inclusion on Burnt Scars Detection From High Resolution EO Imagery: A Case Study Using ASTER imagery

NASA Astrophysics Data System (ADS)

Said, Yahia A.; Petropoulos, George; Srivastava, Prashant K.

2014-05-01

Information on burned area estimates is of key importance in environmental and ecological studies as well as in fire management including damage assessment and planning of post-fire recovery of affected areas. Earth Observation (EO) provides today the most efficient way in obtaining such information in a rapid, consistent and cost-effective manner. The present study aimed at exploring the effect of topographic correction to the burnt area delineation in conditions characteristic of a Mediterranean environment using ASTER high resolution multispectral remotely sensed imagery. A further objective was to investigate the potential added-value of the inclusion of the shortwave infrared (SWIR) bands in improving the retrievals of burned area cartography from the ASTER data. In particular the capability of the Maximum Likelihood (ML), the Support Vector Machines (SVMs) and Object-based Image Analysis (OBIA) classification techniques has been examined herein for the purposes of our study. As a case study is used a typical Mediterranean site on which a fire event occurred in Greece during the summer of 2007, for which post-fire ASTER imagery has been acquired. Our results indicated that the combination of topographic correction (ortho-rectification) with the inclusion of the SWIR bands returned the most accurate results in terms of burnt area mapping. In terms of image processing methods, OBIA showed the best results and found as the most promising approach for burned area mapping with least absolute difference from the validation polygon followed by SVM and ML. All in all, our study provides an important contribution to the understanding of the capability of high resolution imagery such as that from ASTER sensor and corroborates the usefulness particularly of the topographic correction as an image processing step when in delineating the burnt areas from such data. It also provides further evidence that use of EO technology can offer an effective practical tool for the extent of ecosystem destruction from wildfires, providing extremely useful information in co-ordinating efforts for the recovery of fire-affected ecosystems after wildfire. Keywords: Remote Sensing, ASTER, Burned area mapping, Maximum Likelihood, Support Vector Machines, Object-based image analysis, Greece

Impact of soil protection measures based on topographical variations through connectivity indices in two agricultural catchments in Spain

NASA Astrophysics Data System (ADS)

Taguas, Encarnación; Mesas, F. Javier; García-Ferrer, Alfonso; Marín-Moreno, Víctor; Mateos, Luciano

2017-04-01

Physiographic attributes of the catchments (spatial organization and internal connectivity) determine sediment production, transport and delivery to river channels downstream. Understanding the hydrological connectivity allows identifying runoff and sediment contribution from overland flow pathways, rills and gullies at the upper parts of the catchments to sink areas (Borselli et al., 2008). Currently, the design of orchards and row crops plantations is driven by traffic and machinery management criteria, meaning significant simplification of the landscape. Topographic alterations may reduce the connectivity and maximize the retention of water and sediments in catchments by increasing travel times and infiltration (Gay et al., 2016). There are connectivity indices based on topography and land use information (Borselli et al., 2008) and travel times (Chow et al., 1988) which may help to identify measures to reduce water and sediment transfer. In this work, connectivity indices derived from digital elevation models (DEM) of two small agricultural catchments where topographic measures to interrupt the connectivity had been implemented were analyzed. The topographical details of the tree row ridges in a young almond orchard catchment and half-moons (individual terraces) in an olive grove catchment were obtained using Unmanned Aerial Vehicles (UAVs) flights. The aim was to evaluate the benefits of ridges and half-moons by comparing spatial patterns of connectivity indices before and after the topographical modifications in the catchments. The catchments were flown in December 2016. The original DEMs were generated based on previous topographical information and a filter based on minimum heights. The statistics and the maps generated will be presented as results of our study and its interpretation will provide an analysis to preliminarily explore effective and economical measures for erosion control and improved water harvesting. REFERENCES Gay, O. Cerdan, V. Mardhel, M. Desmet. 2016. Application of an index of sediment connectivity in a lowland area. J Soils Sediments (2016) 16:280-293 Borselli, L., Cassi, P., Torri D. 2008. Prolegomena to sediment and flow connectivity in the landscape: A GIS and field numerical assessment. Catena 75, 268-277 Ven Te Chow, D. R., Maidment, L., Mays W. 1988. Applied Hydrology McGraw-Hill, 572 pp. ACKNOWLEDGMENT This study was supported by the project CGL2015-64284-C2-2-R (Spanish Ministry of Economy and Competitiveness).

Micro-topographic controls on hillslope erosion and deposition: a multi-scale case study using random forest

NASA Astrophysics Data System (ADS)

Lu, X.; Li, Y.; Washington-Allen, R. A.; Li, Y.

2017-12-01

Topography imposes a significant impact on water induced soil erosion and deposition. Although existing models incorporate topographic factors in the prediction of erosion, the topography of the hillslope is often considered as a whole and summarized as a single value, without accounting for the micro-variations within the hillslope created through factors including local roughness and channelization. Within-hillslope scale erosion and deposition and their micro-topographic controls are not well understood due to a lack of means to monitor and quantify the geomorphic change with high resolution and accuracy. Advances in remote sensing technology enabled mapping and quantification of erosion and deposition at such scale. On a hillslope in Loudoun Tennessee USA, we used laser scanning to produce temporal DEMs, based on which the erosion and deposition were calculated, and topographic factors including slope, aspect, roughness index, convergence index, terrain wetness index, channel depth, contributing area, and slope length-gradient were derived. To examine how these micro-topographic factors affect erosion and deposition, random forest regression models were used for erosion and deposition at two scales: analytical windows and rill basins (RBs). Two variables representing the impact of precipitation and freeze/thaw are also incorporated. Our models show that the influences of topographic variables on erosion and deposition differ regarding different analytical scales. The two variables denoting the relative location within a slope (elevation) and the RBs (contributing area) are the most important. Threshold effects show that the locations at low elevations are more subjective to more erosion and also more deposition, suggesting larger contributing areas lead to more dynamics regarding sediment exchange. The relative location along rill cross-sections (channel depth) is also important, especially for deposition. Thresholds show that along the cross-sections, erosion tends to occur on the sidewalls, while deposition mainly takes place on rill floors. The models showed better performance for erosion (R2 = 0.49 and 0.61 for window- and RB-based models) compared to deposition (R2 = 0.43 and 0.54 for window- and RB-based models) and were able to predict the spatial patterns of sediment movement.

Numerical Temperature And Fluid-Flow Modelling For The Topographic Effects On Hydrothermal Circulation; A case study in Lucy Strike Vent Field

NASA Astrophysics Data System (ADS)

Erçetin, Engin; Düşünür Doǧan, Doǧa

2017-04-01

The aim of the study is to present a numerical temperature and fluid-flow modelling for the topographic effects on hydrothermal circulation. Bathymetry can create a major disturbance on fluid flow pattern. ANSYS Fluent Computational fluid dynamics software is used for simulations. Coupled fluid flow and temperature quations are solved using a 2-Dimensional control volume finite difference approach. Darcy's law is assumed to hold, the fluid is considered to be anormal Boussinesq incompressible fluid neglecting inertial effects. Several topographic models were simulated and both temperature and fluid flow calculations obtained for this study. The preliminary simulations examine the effect of a ingle bathymetric high on a single plume and the secondary study of simulations investigates the effect of multiple bathymetric highs on multiple plume. The simulations were also performed for the slow spreading Lucky Strike segment along the Mid-Atlantic Ridge (MAR), one of the best studied regions along the MAR, where a 3.4 km deep magma chamber extending 6 km along-axis is found at its center. The Lucky Strike segment displays a transitional morphology between that of the FAMOUS - North FAMOUS segments, which are characterized by well-developed axial valleys typical of slow-spreading segments, and that of the Menez Gwen segment, characterized by an axial high at the segment center. Lucky Strike Segment hosts a central volcano and active vent field located at the segment center and thus constitutes an excellent case study to simulate the effects of bathymetry on fluid flow. Results demonstrate that bathymetric relief has an important influence on hydrothermal flow. Subsurface pressure alterations can be formed by bathymetric highs, for this reason, bathymetric relief ought to be considered while simulating hydrothermal circulation systems. Results of this study suggest the dominant effect of bathymetric highs on fluid flow pattern and Darcy velocities will be presented. Keywords: Hydrothermal Circulation, Lucky Strike, Bathymetry - Topography, Vent Location, Fluid Flow, Numerical Modelling

Micro-endoscopic ear anatomy of guinea pig applied to experimental surgery.

PubMed

Barros, Bruno Borges de Carvalho; Andrade, José Santos Cruz de; Garcia, Leandro Borborema; Pifaia, Gustavo Ribeiro; Cruz, Oswaldo Laércio Mendonça; Onishi, Ektor Tsuneo; Penido, Norma de Oliveira

2014-01-01

To describe topographic and endoscopic anatomy of guinea pig ear for development of surgical approaches in experimental studies. Experimental study. Eight adult guinea pigs (Cavia porcellus) were used in this study. Four animals were described through endoscopic view and four animals were used to describe topographic anatomy. The main structures of middle ear were well identified through endoscopy view: oval and round window, ossicles and vascular structures. Temporal bone position, landmarks and its relations to skull are perceived with topographic description. Topographic anatomic description allowed exposition of temporal bone relations for external surgical approaches. Alternatively, grooves and middle ear structures were identified and may be used to transcanal accesses.

Topographical disorientation in a patient with late-onset blindness with multiple acute ischemic brain lesions.

PubMed

Han, Yu-Hsuan; Pai, Ming-Chyi; Hong, Chi-Tzong

2011-02-01

The neurological basis for topographical disorientation has recently shifted from a model of navigation utilizing egocentric techniques alone, to multiple parallel systems of topographical cognition including egocentric and allocentric strategies. We explored if this hypothesis may be applicable to a patient with late-onset blindness. A 72-year-old male with bilateral blindness experienced a sudden inability to navigate after suffering a stroke. Multiple lesions scattered bilaterally throughout the parietal-occipital lobes were found. Deficits in the neural correlates underlying egocentric or allocentric strategies may result in topographical disorientation, even if one appears to be the predominant orientation strategy utilized. Copyright © 2010 Elsevier Ltd. All rights reserved.

Application of autonomous robotized systems for the collection of nearshore topographic changing and hydrodynamic measurements

NASA Astrophysics Data System (ADS)

Belyakov, Vladimir; Makarov, Vladimir; Zezyulin, Denis; Kurkin, Andrey; Pelinovsky, Efim

2015-04-01

Hazardous phenomena in the coastal zone lead to the topographic changing which are difficulty inspected by traditional methods. It is why those autonomous robots are used for collection of nearshore topographic and hydrodynamic measurements. The robot RTS-Hanna is well-known (Wubbold, F., Hentschel, M., Vousdoukas, M., and Wagner, B. Application of an autonomous robot for the collection of nearshore topographic and hydrodynamic measurements. Coastal Engineering Proceedings, 2012, vol. 33, Paper 53). We describe here several constructions of mobile systems developed in Laboratory "Transported Machines and Transported Complexes", Nizhny Novgorod State Technical University. They can be used in the field surveys and monitoring of wave regimes nearshore.

Advances for the Topographic Characterisation of SMC Materials

PubMed Central

Calvimontes, Alfredo; Grundke, Karina; Müller, Anett; Stamm, Manfred

2009-01-01

For a comprehensive study of Sheet Moulding Compound (SMC) surfaces, topographical data obtained by a contact-free optical method (chromatic aberration confocal imaging) were systematically acquired to characterise these surfaces with regard to their statistical, functional and volumetrical properties. Optimal sampling conditions (cut-off length and resolution) were obtained by a topographical-statistical procedure proposed in the present work. By using different length scales specific morphologies due to the influence of moulding conditions, metallic mould topography, glass fibre content and glass fibre orientation can be characterized. The aim of this study is to suggest a systematic topographical characterization procedure for composite materials in order to study and recognize the influence of production conditions on their surface quality.

Pure topographical disorientation in a patient with right occipito-temporal lesion.

PubMed

Caglio, Marcella; Castelli, Lorys; Cerrato, Paolo; Latini-Corazzini, Luca

2011-01-01

We describe a patient who presented with a pure topographical disorientation after a stroke involving the right mesial occipito-temporal cortex. He could not point to external unseen landmarks or draw a map of his city, while he could recognize landmarks, and judge the distance, and describe the route between pairs of landmarks of the same city. He underwent standardized cognitive tests, and 6 tasks were used to assess a topographical orientation route-survey. This study provides evidence that topographical disorientation can be subdivided into very specific components. The results suggest that one of these components might refer to the processing of an allocentric map separable from the representation of route knowledge.

Topographically driven crustal flow and its implication to the development of pinned oroclines

NASA Technical Reports Server (NTRS)

Hsui, Albert T.; Wilkerson, M. Scott; Marshak, Stephen

1990-01-01

Pinned oroclines, a type of curved orogen which results from lateral pinning of a growing fold-thrust belt, tend to resemble parabolic Newtonian curvature modified by different degrees of flattening at the flow front. It is proposed that such curves can be generated by Newtonian crustal flow driven by topographic variations. In this model, regional topographic differences create a regional flow which produces a parabolic flow front on interaction with lateral bounding obstacles. Local topographic variations modify the parabolic curves and yield more flat-crested, non-Newtonian-type curvatures. A finite-difference thin-skin tectonic simulation demonstrates that both Newtonian and non-Newtonian curved orogens can be produced within a Newtonian crust.

Species Associations in a Species-Rich Subtropical Forest Were Not Well-Explained by Stochastic Geometry of Biodiversity

PubMed Central

Wang, Qinggang; Bao, Dachuan; Guo, Yili; Lu, Junmeng; Lu, Zhijun; Xu, Yaozhan; Zhang, Kuihan; Liu, Haibo; Meng, Hongjie; Jiang, Mingxi; Qiao, Xiujuan; Huang, Handong

2014-01-01

The stochastic dilution hypothesis has been proposed to explain species coexistence in species-rich communities. The relative importance of the stochastic dilution effects with respect to other effects such as competition and habitat filtering required to be tested. In this study, using data from a 25-ha species-rich subtropical forest plot with a strong topographic structure at Badagongshan in central China, we analyzed overall species associations and fine-scale species interactions between 2,550 species pairs. The result showed that: (1) the proportion of segregation in overall species association analysis at 2 m neighborhood in this plot followed the prediction of the stochastic dilution hypothesis that segregations should decrease with species richness but that at 10 m neighborhood was higher than the prediction. (2) The proportion of no association type was lower than the expectation of stochastic dilution hypothesis. (3) Fine-scale species interaction analyses using Heterogeneous Poisson processes as null models revealed a high proportion (47%) of significant species effects. However, the assumption of separation of scale of this method was not fully met in this plot with a strong fine-scale topographic structure. We also found that for species within the same families, fine-scale positive species interactions occurred more frequently and negative ones occurred less frequently than expected by chance. These results suggested effects of environmental filtering other than species interaction in this forest. (4) We also found that arbor species showed a much higher proportion of significant fine-scale species interactions (66%) than shrub species (18%). We concluded that the stochastic dilution hypothesis only be partly supported and environmental filtering left discernible spatial signals in the spatial associations between species in this species-rich subtropical forest with a strong topographic structure. PMID:24824996

Species associations in a species-rich subtropical forest were not well-explained by stochastic geometry of biodiversity.

PubMed

Wang, Qinggang; Bao, Dachuan; Guo, Yili; Lu, Junmeng; Lu, Zhijun; Xu, Yaozhan; Zhang, Kuihan; Liu, Haibo; Meng, Hongjie; Jiang, Mingxi; Qiao, Xiujuan; Huang, Handong

2014-01-01

The stochastic dilution hypothesis has been proposed to explain species coexistence in species-rich communities. The relative importance of the stochastic dilution effects with respect to other effects such as competition and habitat filtering required to be tested. In this study, using data from a 25-ha species-rich subtropical forest plot with a strong topographic structure at Badagongshan in central China, we analyzed overall species associations and fine-scale species interactions between 2,550 species pairs. The result showed that: (1) the proportion of segregation in overall species association analysis at 2 m neighborhood in this plot followed the prediction of the stochastic dilution hypothesis that segregations should decrease with species richness but that at 10 m neighborhood was higher than the prediction. (2) The proportion of no association type was lower than the expectation of stochastic dilution hypothesis. (3) Fine-scale species interaction analyses using Heterogeneous Poisson processes as null models revealed a high proportion (47%) of significant species effects. However, the assumption of separation of scale of this method was not fully met in this plot with a strong fine-scale topographic structure. We also found that for species within the same families, fine-scale positive species interactions occurred more frequently and negative ones occurred less frequently than expected by chance. These results suggested effects of environmental filtering other than species interaction in this forest. (4) We also found that arbor species showed a much higher proportion of significant fine-scale species interactions (66%) than shrub species (18%). We concluded that the stochastic dilution hypothesis only be partly supported and environmental filtering left discernible spatial signals in the spatial associations between species in this species-rich subtropical forest with a strong topographic structure.

Serotonergic systems associated with arousal and vigilance behaviors following administration of anxiogenic drugs.

PubMed

Abrams, J K; Johnson, P L; Hay-Schmidt, A; Mikkelsen, J D; Shekhar, A; Lowry, C A

2005-01-01

Serotonergic systems play important roles in modulating behavioral arousal, including behavioral arousal and vigilance associated with anxiety states. To further our understanding of the neural systems associated with increases in anxiety states, we investigated the effects of multiple anxiogenic drugs on topographically organized subpopulations of serotonergic neurons using double immunohistochemical staining for c-Fos and tryptophan hydroxylase combined with topographical analysis of the rat dorsal raphe nucleus (DR). Anxiogenic drugs with diverse pharmacological properties including the adenosine receptor antagonist caffeine, the serotonin 5-HT2A/2C receptor agonist m-chlorophenyl piperazine (mCPP), the alpha2-adrenoreceptor antagonist yohimbine, and the benzodiazepine receptor partial inverse agonist N-methyl-beta-carboline-3-carboxamide (FG-7142) induced increases in behavioral arousal and vigilance behaviors consistent with an increase in anxiety state. In addition, these anxiogenic drugs, excluding yohimbine, had convergent actions on an anatomically-defined subset of serotonergic neurons within the middle and caudal, dorsal subdivision of the DR. High resolution topographical analysis revealed that at the mid-rostrocaudal level, caffeine and FG-7142 had convergent effects on c-Fos expression in serotonergic neurons that were restricted to a previously undefined region, which we have named the shell region of the dorsal part of the dorsal raphe nucleus (DRDSh), that overlaps the anatomical border between the dorsal part of the dorsal raphe nucleus, the ventral part of the dorsal raphe nucleus (DRV), and the ventrolateral part of the dorsal raphe nucleus (DRVL). Retrograde tracing methods revealed that DRDSh contains large numbers of neurons projecting to the basolateral amygdaloid nucleus, a forebrain structure important for emotional appraisal and modulation of anxiety-related physiological and behavioral responses. Together these findings support the hypothesis that there is a functional topographical organization in the DR and are consistent with the hypothesis that anxiogenic drugs have selective actions on a subpopulation of serotonergic neurons projecting to a distributed central autonomic and emotional motor control system regulating anxiety states and anxiety-related physiological and behavioral responses.

Derivation of Ground Surface and Vegetation in a Coastal Florida Wetland with Airborne Laser Technology

USGS Publications Warehouse

Raabe, Ellen A.; Harris, Melanie S.; Shrestha, Ramesh L.; Carter, William E.

2008-01-01

The geomorphology and vegetation of marsh-dominated coastal lowlands were mapped from airborne laser data points collected on the Gulf Coast of Florida near Cedar Key. Surface models were developed using low- and high-point filters to separate ground-surface and vegetation-canopy intercepts. In a non-automated process, the landscape was partitioned into functional landscape units to manage the modeling of key landscape features in discrete processing steps. The final digital ground surface-elevation model offers a faithful representation of topographic relief beneath canopies of tidal marsh and coastal forest. Bare-earth models approximate field-surveyed heights by + 0.17 m in the open marsh and + 0.22 m under thick marsh or forest canopy. The laser-derived digital surface models effectively delineate surface features of relatively inaccessible coastal habitats with a geographic coverage and vertical detail previously unavailable. Coastal topographic details include tidal-creek tributaries, levees, modest topographic undulations in the intertidal zone, karst features, silviculture, and relict sand dunes under coastal-forest canopy. A combination of laser-derived ground-surface and canopy-height models and intensity values provided additional mapping capabilities to differentiate between tidal-marsh zones and forest types such as mesic flatwood, hydric hammock, and oak scrub. Additional derived products include fine-scale shoreline and topographic profiles. The derived products demonstrate the capability to identify areas of concern to resource managers and unique components of the coastal system from laser altimetry. Because the very nature of a wetland system presents difficulties for access and data collection, airborne coverage from remote sensors has become an accepted alternative for monitoring wetland regions. Data acquisition with airborne laser represents a viable option for mapping coastal topography and for evaluating habitats and coastal change on marsh-dominated coasts. Such datasets can be instrumental in effective coastal-resource management.

TENOGENIC DIFFERENTIATION OF HUMAN MSCs INDUCED BY THE TOPOGRAPHY OF ELECTROCHEMICALLY ALIGNED COLLAGEN THREADS

PubMed Central

Kishore, Vipuil; Bullock, Whitney; Sun, Xuanhao; Van Dyke, William Scott; Akkus, Ozan

2011-01-01

Topographical cues from the extracellular microenvironment can influence cellular activity including proliferation and differentiation. Information on the effects of material topography on tenogenic differentiation of human mesenchymal stem cells (human MSCs) is limited. A methodology using the principles of isoelectric focusing has previously been developed in our laboratory to synthesize electrochemically aligned collagen (ELAC) threads that mimics the packing density, alignment and strength of collagen dense connective tissues. In the current study, human MSCs were cultured on ELAC and randomly-oriented collagen threads and the effect of collagen orientation on cell morphology, proliferation and tenogenic differentiation was investigated. The results indicate that higher rates of proliferation were observed on randomly oriented collagen threads compared to ELAC threads. On the other hand, tendon specific markers such as scleraxis, tenomodulin, tenascin-C and collagen-III were significantly increased on ELAC threads compared to randomly oriented collagen threads. Additionally, osteocalcin, a specific marker of bone differentiation was suppressed on ELAC threads. Previous studies have reported that BMP-12 is a key growth factor to induce tenogenic differentiation of human MSCs. To evaluate the synergistic effect of BMP-12 and collagen orientation, human MSCs were cultured on ELAC threads in culture medium supplemented with and without BMP-12. The results revealed that BMP-12 did not have an additional effect on the tenogenic differentiation of human MSCs on ELAC threads. Together, these results suggest that ELAC induces tenogenic differentiation of human MSCs by presenting an aligned and dense collagen substrate, akin to the tendon itself. In conclusion, ELAC has a significant potential to be used as a tendon replacement and in the development of an osteotendinous construct towards the regeneration of bone-tendon interfaces. PMID:22177622

Mission in the works promises precise global topographic data

USGS Publications Warehouse

Farr, T.; Evans, D.; Zebker, H.; Harding, D.; Bufton, J.; Dixon, T.; Vetrella, S.; Gesch, D.B.

1995-01-01

Significant deficiencies in the quality of today's topographic data severely limit scientific applications. Very few available data sets meet the stringent requirements of 10–30 m for global digital topography and 5 m or better vertical accuracy, and existing satellite systems are unlikely to fulfill these requirements. The Joint Topographic Science Working Group, appointed by NASA and the Italian Space Agency, concluded that radar interferometry coupled with a laser altimeter would be the most promising approach for improving data quality. By providing its own illumination at a wavelength Ion g enough to (e.g., λ = 25 cm) to penetrate clouds and rain, the interferometer would provide a global, uniform high-quality topographic data set. One mission under study, TOPSAT, is well positioned to fill this niche and promises to pave the way toward a more standardized and precise topographic database. TOPSAT would be an international mission, designed to make use of recent technology advances in such programs as NASA's New Millennium. It could be ready to launch by the end of this decade.

Morphologic Evolution of the Mount St. Helens Crater Area, Washington

NASA Technical Reports Server (NTRS)

Beach, G. L.

1985-01-01

The large rockslide-avalanche that preceded the eruption of Mount St. Helens on 18 May 1980 removed approximately 2.8 cubic km of material from the summit and north flank of the volcano, forming a horseshoe-shaped crater 2.0 km wide and 3.9 km long. A variety of erosional and depositional processes, notably mass wasting and gully development, acted to modify the topographic configuration of the crater area. To document this morphologic evolution, a series of annual large-scale topographic maps is being produced as a base for comparitive geomorphic analysis. Four topographic maps of the Mount St. Helens crater area at a scale of 1:4000 were produced by the National Mapping Division of the U. S. Geological Survey. Stereo aerial photography for the maps was obtained on 23 October 1980, 10 September 1981, 1 September 1982, and 17 August 1983. To quantify topographic changes in the study area, each topographic map is being digitized and corresponding X, Y, and Z values from successive maps are being computer-compared.

Space based topographic mapping experiment using Seasat synthetic aperture radar and LANDSAT 3 return beam vidicon imagery

NASA Technical Reports Server (NTRS)

Mader, G. L.

1981-01-01

A technique for producing topographic information is described which is based on same side/same time viewing using a dissimilar combination of radar imagery and photographic images. Common geographic areas viewed from similar space reference locations produce scene elevation displacements in opposite direction and proper use of this characteristic can yield the perspective information necessary for determination of base to height ratios. These base to height ratios can in turn be used to produce a topographic map. A test area covering the Harrisburg, Pennsylvania region was observed by synthetic aperture radar on the Seasat satellite and by return beam vidicon on by the LANDSAT - 3 satellite. The techniques developed for the scaling re-orientation and common registration of the two images are presented along with the topographic determination data. Topographic determination based exclusively on the images content is compared to the map information which is used as a performance calibration base.

Pleistocene and ecological effects on continental-scale genetic differentiation in the bobcat (Lynx rufus).

PubMed

Reding, Dawn M; Bronikowski, Anne M; Johnson, Warren E; Clark, William R

2012-06-01

The potential for widespread, mobile species to exhibit genetic structure without clear geographic barriers is a topic of growing interest. Yet the patterns and mechanisms of structure--particularly over broad spatial scales--remain largely unexplored for these species. Bobcats occur across North America and possess many characteristics expected to promote gene flow. To test whether historical, topographic or ecological factors have influenced genetic differentiation in this species, we analysed 1 kb mtDNA sequence and 15 microsatellite loci from over 1700 samples collected across its range. The primary signature in both marker types involved a longitudinal cline with a sharp transition, or suture zone, occurring along the Great Plains. Thus, the data distinguished bobcats in the eastern USA from those in the western half, with no obvious physical barrier to gene flow. Demographic analyses supported a scenario of expansion from separate Pleistocene refugia, with the Great Plains representing a zone of secondary contact. Substructure within the two main lineages likely reflected founder effects, ecological factors, anthropogenic/topographic effects or a combination of these forces. Two prominent topographic features, the Mississippi River and Rocky Mountains, were not supported as significant genetic barriers. Ecological regions and environmental correlates explained a small but significant proportion of genetic variation. Overall, results implicate historical processes as the primary cause of broad-scale genetic differentiation, but contemporary forces seem to also play a role in promoting and maintaining structure. Despite the bobcat's mobility and broad niche, large-scale landscape changes have contributed to significant and complex patterns of genetic structure. © 2012 Blackwell Publishing Ltd.

Michael Addition Reactions between Chiral Equivalents of a Nucleophilic Glycine and (S)- or (R)-3-[(E)-Enoyl]-4-phenyl-1,3-oxazolidin-2-ones as a General Method for Efficient Preparation of β-Substituted Pyroglutamic Acids. Case of Topographically Controlled Stereoselectivity

PubMed Central

Soloshonok*, Vadim A.; Cai, Chaozhong; Yamada, Takeshi; Ueki, Hisanori; Ohfune, Yasufumi; Hruby, Victor J.

2006-01-01

This paper describes a systematic study of addition reactions between the chiral Ni(II) complex of the Schiff base of glycine with (S)-o-[N-(N-benzylprolyl)amino]benzophenone and (S)- or (R)-3-[(E)-enoyl]-4-phenyl-1,3-oxazolidin-2-ones as a general and synthetically efficient approach to β-substituted pyroglutamic acids and relevant compounds. These reactions were shown to occur at room temperature in the presence of nonchelating organic bases and, most notably, with very high (>98% diastereomeric excess (de)) stereoselectivity at both newly formed stereogenic centers. The stereochemical outcome of the reactions was found to be overwhelmingly controlled by the stereochemical preferences of the Michael acceptors, and the chirality of the glycine complex influenced only the reaction rate. Thus, in the reactions of both the (S)-configured Ni(II) complex and the Michael acceptors, the reaction rates were exceptionally high, allowing preparation of the corresponding products with virtually quantitative (>98%) chemical and stereochemical yields. In contrast, reactions of the (S)-configured Ni(II) complex and (R)-configured Michael acceptors proceeded at noticeably lower rates, but the addition products were obtained in high diastereo-and enantiomeric purity. To rationalize the remarkably high and robust stereoselectivity observed in these reactions, we consider an enzyme–substrate-like mode of interaction involing a topographical match or mismatch of two geometric figures. Excellent chemical and stereochemical yields, combined with the simplicity and operational convenience of the experimental procedures, render the present method of immediate use for preparing various β-substituted pyroglutamic acids and related compounds. PMID:16248672

Michael addition reactions between chiral equivalents of a nucleophilic glycine and (S)- or (R)-3-[(E)-enoyl]-4-phenyl-1,3-oxazolidin-2-ones as a general method for efficient preparation of beta-substituted pyroglutamic acids. Case of topographically controlled stereoselectivity.

PubMed

Soloshonok, Vadim A; Cai, Chaozhong; Yamada, Takeshi; Ueki, Hisanori; Ohfune, Yasufumi; Hruby, Victor J

2005-11-02

This paper describes a systematic study of addition reactions between the chiral Ni(II) complex of the Schiff base of glycine with (S)-o-[N-(N-benzylprolyl)amino]benzophenone and (S)- or (R)-3-[(E)-enoyl]-4-phenyl-1,3-oxazolidin-2-ones as a general and synthetically efficient approach to beta-substituted pyroglutamic acids and relevant compounds. These reactions were shown to occur at room temperature in the presence of nonchelating organic bases and, most notably, with very high (>98% diastereomeric excess (de)) stereoselectivity at both newly formed stereogenic centers. The stereochemical outcome of the reactions was found to be overwhelmingly controlled by the stereochemical preferences of the Michael acceptors, and the chirality of the glycine complex influenced only the reaction rate. Thus, in the reactions of both the (S)-configured Ni(II) complex and the Michael acceptors, the reaction rates were exceptionally high, allowing preparation of the corresponding products with virtually quantitative (>98%) chemical and stereochemical yields. In contrast, reactions of the (S)-configured Ni(II) complex and (R)-configured Michael acceptors proceeded at noticeably lower rates, but the addition products were obtained in high diastereo- and enantiomeric purity. To rationalize the remarkably high and robust stereoselectivity observed in these reactions, we consider an enzyme-substrate-like mode of interaction involving a topographical match or mismatch of two geometric figures. Excellent chemical and stereochemical yields, combined with the simplicity and operational convenience of the experimental procedures, render the present method of immediate use for preparing various beta-substituted pyroglutamic acids and related compounds.

Into the groove: instructive silk-polypyrrole films with topographical guidance cues direct DRG neurite outgrowth.

PubMed

Hardy, John G; Khaing, Zin Z; Xin, Shangjing; Tien, Lee W; Ghezzi, Chiara E; Mouser, David J; Sukhavasi, Rushi C; Preda, Rucsanda C; Gil, Eun S; Kaplan, David L; Schmidt, Christine E

2015-01-01

Instructive biomaterials capable of controlling the behaviour of the cells are particularly interesting scaffolds for tissue engineering and regenerative medicine. Novel biomaterials are particularly important in societies with rapidly aging populations, where demand for organ/tissue donations is greater than their supply. Herein we describe the preparation of electrically conductive silk film-based nerve tissue scaffolds that are manufactured using all aqueous processing. Aqueous solutions of Bombyx mori silk were cast on flexible polydimethylsiloxane substrates with micrometer-scale grooves on their surfaces, allowed to dry, and annealed to impart β-sheets to the silk which assures that the materials are stable for further processing in water. The silk films were rendered conductive by generating an interpenetrating network of polypyrrole and polystyrenesulfonate in the silk matrix. Films were incubated in an aqueous solution of pyrrole (monomer), polystyrenesulfonate (dopant) and iron chloride (initiator), after which they were thoroughly washed to remove low molecular weight components (monomers, initiators, and oligomers) and dried, yielding conductive films with sheet resistances of 124 ± 23 kΩ square(-1). The micrometer-scale grooves that are present on the surface of the films are analogous to the natural topography in the extracellular matrix of various tissues (bone, muscle, nerve, skin) to which cells respond. Dorsal root ganglions (DRG) adhere to the films and the grooves in the surface of the films instruct the aligned growth of processes extending from the DRG. Such materials potentially enable the electrical stimulation (ES) of cells cultured on them, and future in vitro studies will focus on understanding the interplay between electrical and topographical cues on the behaviour of cells cultured on them.

Holocene sedimentation at Corkscrew Swamp (Collier Co. ): A model for the origin and evolution of the present wetland-dominated regime of south Florida

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stone, P.A.; Duever, M.J.; Meeder, J.F.

1993-03-01

A two-layer peat-over-marl (calcitic mud) sequence characterizes Corkscrew Swamp, a swamp/marsh complex in northern Big Cypress Swamp. The marl began depositing about 10,600 BP and based upon the regional modern analog represents a marsh (grassy) environment of relatively short seasonal flooding, rather than a marl lake. The marsh succeeded formerly dry land of full-glacial times on a long-emerged marine-sand and limestone peninsula. About 5,700 BP peat deposition began by the development of longer-flooded wetland, either marsh or woody swamp vegetation. Both shifts (Pleistocene/Holocene and mid-Holocene) represent onsets of wetter conditions, either episodically or by slowly passing critical thresholds, under controlmore » of climate and sea level (hydrologic baselevel). With the rise in average water level at and following each shift, in part by feedback from sediment infilling of the shallow (ca. 2.5m) mineral-substrate basin, the wetland and its deposit expanded upslope, both vertically and outward. A younger basal-peat date (3,900 BP) occurs toward the periphery. Some local topographic alteration by peat fire about 500 BP persists and affects the modern swamp vegetation. A wide swamp-to-marsh shift in other parts may have a similar cause. The shorter record yet revealed for the northern Everglades shows the same two-stage sequence, similar timing in peatland development, wetland and sediment expansion, and long-term (but there different) influences of local peatland topographic alteration. Many wetland areas in South Florida data from a mid-Holocene shift (7,000--4,000 BP).« less

Coarse Grained Modeling of Block Copolymer Lithography: The Effects of Pattern Design on the Thermodynamics and Kinetics of the Directed Self Assembly of Block Copolymers

NASA Astrophysics Data System (ADS)

Garner, Grant Parker

The directed self assembly of block copolymers is an exciting complimentary technique for the fabrication of nanoscale structures for lithographic applications. Typically a directed self assembly process is driven through substrates with chemical (chemoepitaxy) or topographical (graphoepitaxy) guiding features. These patterning strategies have led to the ability to assemble structures with a high degree of perfection over large areas. However, a guiding pattern has not been created which assembles the desired features with a defect density that is commensurate with industrial standards of 1 defect/100cm 2. This work focuses on using molecular simulations on the Theoretically Informed Coarse Grained model to provide design rules for substrate patterns which drive the assembly of desired, device-oriented morphologies. Prior to the work presented in Chapter 2, the TICG model has been used in conjunction with a chemical pattern that is approximated as a hard-impenetrable surface. As many experimental systems use polymer brushes to help guide the polymer melt deposited on the substrate, this work analyzes the consequences of such an assumption by comparing a model where the polymer brush is explicitly implemented to the hard-wall substrate used in the past. Then, a methodology which utilizes a evolutionary optimization method is used to map the parameters of the more detailed model to the hard-surface model. This provides a qualitative understanding of how to interpret the model parameters used in previous works in the context of real experimental pattern designs. Chapter 3 discuss the concept of competitive assemblies in regards to defining a thermodynamic processing window in design space for assembling lines-and-spaces. The most competitive assembly to the desired orientation of the lamella is defined as a rotation of assembled lamella to the underlying pattern. Thermodynamic integration is used to calculate the free-energy difference between these assemblies over chemical patterns with varied design parameters. Local maximums in the free-energy difference are observed over pattern designs that are in qualitatively agreement with the pattern designs which produce the most perfect assemblies in experiments. The analysis is extended to study how choice of chemistry impacts this thermodynamic selection for the desired morphology. Finally, Chapter 4 provides insight into the kinetics of patterned directed self-assembly by investigating cylinder forming block copolymers within cylindrical confinements. Through the use of the string method, the minimum free-energy path between a defective state and the desired assembled morphology is calculated and clear transition states are highlighted. The effects of key parameters of the confinement design on the calculated minimum free energy path are calculated to identify design rules which should lead to a better understanding of optimal connement design for eliminating defects. In addition, a specific modification to existing cylindrical confinements is discussed as a possibility for tackling the problem of placement accuracy for a cylinder that is assembled within the confinement.

[Study on the change of optical zone after femtosecond laser assisted laser in situ keratomileusis].

PubMed

Li, H; Chen, M; Tian, L; Li, D W; Peng, Y S; Zhang, F F

2018-01-11

Objective: To explore the change of optical zone after femtosecond laser assisted laser in sitn keratomileusis(FS-LASIK) so as to provide the reference for measurement and design of clinical optical zone. Methods: This retrospective case series study covers 41 eyes of 24 patients (7 males and 17 females, aged from 18 to 42 years old) with myopia and myopic astigmatism who have received FS-LASIK surgery at Corneal Refractive Department of Qingdao Eye Hospital and completed over 6 months of clinical follow-up. Pentacam system (with the application of 6 corneal topographic map modes including: the pure axial curvature topographic map, the pure tangential curvature topographic map, the axial curvature difference topographic map, the tangential curvature difference topographic map, the postoperative front elevation map and the corneal thickness difference topographic map), combined with transparent concentric software (a system independently developed by Qingdao Eye Hospital) was used to measure the optical zone at 1, 3 and 6 months postoperatively, the optical zone diameters measurement results among different follow-up times in group were analyzed with the repeated measures analysis of variance, and the actual measured values and the theoretical design values of the optical zone were analyzed with independent-samples t-testing. Spearman correlation coefficient ( r(s) ) have been applied to evaluate the relationship between postoperative optical zone measurement values and the potential influencing factors. Results: The optical zone diameters measured by pure axial curvature topographic map at 1, 3 and 6 months after FS-LASIK showed (6.55±0.50)mm, (6.50±0.53)mm and (6.48±0.53)mm respectively. The differences between values are of no statistical significance ( F= 1.60, P= 0.21), the optical zone diameter measured by pure tangential curvature topographic map at 1, 3 and 6 months after FS-LASIK showed (5.44±0.46)mm, (5.46±0.52)mm and (5.44±0.50)mm respectively, the differences between values are of no statistical significance ( F= 0.17, P= 0.85). The optical zone diameters measured by postoperative front elevation map at 1, 3 and 6 months after FS-LASIK showed (5.06±0.28)mm, (5.12±0.32)mm and (5.17±0.28)mm respectively. The differences between the values of 3 and 6 months postoperatively are of no statistical significance ( F= 6.14, P= 0.15), the optical zone diameters measured by axial curvature difference topographic map at 1, 3 and 6 months after FS-LASIK showed (6.51±0.37)mm, (6.45±0.41)mm and (6.41±0.40)mm respectively, and the differences between the values of 3 and 6 months postoperatively are of no statistical significance ( F= 7.25, P= 0.05). The optical zone diameters measured by tangential curvature difference topographic map at 1, 3 and 6 months after FS-LASIK showed (5.21±0.23)mm, (5.16±0.19)mm and (5.17±0.20) mm respectively, and the differences between the values of 1 and 3 months postoperatively are of statistical significance ( F= 1.75, P= 0.04). The optical zone diameters measured by corneal thickness difference topographic map at 1, 3 and 6 months after FS-LASIK showed (6.53±0.40)mm, (6.39±0.43)mm and (6.41±0.47)mm respectively, and the differences between the values of 1 and 3 months postoperatively are of statistical significance ( F= 1.67, P= 0.032). The actual measured optical zone values from the 6 different modes of Pentacam system are less than the theoretical design values (7.75 mm), and the differences were statistical significance ( t= -15.42, -29.39, -59.27, -21.47, -81.69, -18.22, P< 0.01). Conclusions: The optical zone measurement values tend to be stable at 3 months after FS-LASIK. The actual measured values from all the 6 different modes of Pentacam system were less than the theoretical design values. The results from pure tangential curvature topographic map, the tangential curvature difference topographic map and the postoperative front elevation map showed greater variation with clear border, which was beneficial for eccentric research. The results from pure axial curvature topographic map, the axial curvature difference topographic map and the corneal thickness difference topographic map were close to the theoretically designed values. Furthermore, the axial curvature difference topographic map showed clearer border and less variation thus maybe more favorable for measuring optical zone in clinical application. (Chin J Ophthalmol, 2018, 54: 39-47) .

Streptococcus pneumoniae Endohexosaminidase D, Structural and Mechanistic Insight into Substrate-Assisted Catalysis in Family 85 Glycoside Hydrolases

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abbott, D.; Macauley, M; Vocadlo, D

2009-01-01

Endo-?-d-glucosaminidases from family 85 of glycoside hydrolases (GH85 endohexosaminidases) act to cleave the glycosidic linkage between the two N-acetylglucosamine units that make up the chitobiose core of N-glycans. Endohexosaminidase D (Endo-D), produced by Streptococcus pneumoniae, is believed to contribute to the virulence of this organism by playing a role in the deglycosylation of IgG antibodies. Endohexosaminidases have received significant attention for this reason and, moreover, because they are powerful tools for chemoenzymatic synthesis of proteins having defined glycoforms. Here we describe mechanistic and structural studies of the catalytic domain (SpGH85) of Endo-D that provide compelling support for GH85 enzymes usingmore » a catalytic mechanism involving substrate-assisted catalysis. Furthermore, the structure of SpGH85 in complex with the mechanism-based competitive inhibitor NAG-thiazoline (Kd = 28 ?m) provides a coherent rationale for previous mutagenesis studies of Endo-D and other related GH85 enzymes. We also find GH85, GH56, and GH18 enzymes have a similar configuration of catalytic residues. Notably, GH85 enzymes have an asparagine in place of the aspartate residue found in these other families of glycosidases. We propose that this residue, as the imidic acid tautomer, acts analogously to the key catalytic aspartate of GH56 and GH18 enzymes. This topographically conserved arrangement of the asparagine residue and a conserved glutamic acid, coupled with previous kinetic studies, suggests these enzymes may use an unusual proton shuttle to coordinate effective general acid and base catalysis to aid cleavage of the glycosidic bond. These results collectively provide a blueprint that may be used to facilitate protein engineering of these enzymes to improve their function as biocatalysts for synthesizing glycoproteins having defined glycoforms and also may serve as a guide for generating inhibitors of GH85 enzymes.« less

Interactions Between Channel Topography and Hydrokinetic Turbines: Sediment Transport, Turbine Performance, and Wake Characteristics

NASA Astrophysics Data System (ADS)

Hill, Craig Steven

Accelerating marine hydrokinetic (MHK) renewable energy development towards commercial viability requires investigating interactions between the engineered environment and its surrounding physical and biological environments. Complex and energetic hydrodynamic and morphodynamic environments desired for such energy conversion installations present difficulties for designing efficient yet robust sustainable devices, while permitting agency uncertainties regarding MHK device environmental interactions result in lengthy and costly processes prior to installing and demonstrating emerging technologies. A research program at St. Anthony Falls Laboratory (SAFL), University of Minnesota, utilized multi-scale physical experiments to study the interactions between axial-flow hydrokinetic turbines, turbulent open channel flow, sediment transport, turbulent turbine wakes, and complex hydro-morphodynamic processes in channels. Model axial-flow current-driven three-bladed turbines (rotor diameters, dT = 0.15m and 0.5m) were installed in open channel flumes with both erodible and non-erodible substrates. Device-induced local scour was monitored over several hydraulic conditions and material sizes. Synchronous velocity, bed elevation and turbine performance measurements provide an indication into the effect channel topography has on device performance. Complimentary experiments were performed in a realistic meandering outdoor research channel with active sediment transport to investigate device interactions with bedform migration and secondary turbulent flow patterns in asymmetric channel environments. The suite of experiments undertaken during this research program at SAFL in multiple channels with stationary and mobile substrates under a variety of turbine configurations provides an in-depth investigation into how axial-flow hydrokinetic devices respond to turbulent channel flow and topographic complexity, and how they impact local and far-field sediment transport characteristics. Results provide the foundation for investigating advanced turbine control strategies for optimal power production in non-stationary environments, while also providing a robust data-set for computational model validation for further investigating the interactions between energy conversion devices and the physical environment.

Airborne Topographic Mapper Calibration Procedures and Accuracy Assessment

NASA Technical Reports Server (NTRS)

Martin, Chreston F.; Krabill, William B.; Manizade, Serdar S.; Russell, Rob L.; Sonntag, John G.; Swift, Robert N.; Yungel, James K.

2012-01-01

Description of NASA Airborn Topographic Mapper (ATM) lidar calibration procedures including analysis of the accuracy and consistancy of various ATM instrument parameters and the resulting influence on topographic elevation measurements. The ATM elevations measurements from a nominal operating altitude 500 to 750 m above the ice surface was found to be: Horizontal Accuracy 74 cm, Horizontal Precision 14 cm, Vertical Accuracy 6.6 cm, Vertical Precision 3 cm.

An Approach to Assessment of Relief Formats for Hardcopy Topographic Maps

DTIC Science & Technology

1979-04-01

Topographic Lab, Ft Delvoir, ATTN: ETL- TD --S I USA Rsch Dfc , Durham, ATTN: Life Sciences Dir I USA Topographic Lab, Ft Belvoir, ATTN. STINFO Centel 2 USAftIEM...Date Ented) ~2O 1a~designers will be ~interested in this report. NTIS G~A&.1 D2DC TAR 4 I UNCLASS I iFI tD SEUIYc4.O HS ~t~"Oarrfi Technical Paper

Computer Program User’s Manual for FIREFINDER Digital Topographic Data Verification Library Dubbing System,

DTIC Science & Technology

1981-11-30

COMPUTER PROGRAM USER’S MANUAL FOR FIREFINDER DIGITAL TOPOGRAPHIC DATA VERIFICATION LIBRARY DUBBING SYSTEM 30 NOVEMBER 1981 by: Marie Ceres Leslie R...Library .............................. 1-2 1.2.3 Dubbing .......................... 1-2 1.3 Library Process Overview ..................... 1-3 2 LIBRARY...RPOSE AND SCOPE This manual describes the computer programs for the FIREFINDER Digital Topographic Data Veri fication-Library- Dubbing System (FFDTDVLDS

Multiresolution analysis of characteristic length scales with high-resolution topographic data

NASA Astrophysics Data System (ADS)

Sangireddy, Harish; Stark, Colin P.; Passalacqua, Paola

2017-07-01

Characteristic length scales (CLS) define landscape structure and delimit geomorphic processes. Here we use multiresolution analysis (MRA) to estimate such scales from high-resolution topographic data. MRA employs progressive terrain defocusing, via convolution of the terrain data with Gaussian kernels of increasing standard deviation, and calculation at each smoothing resolution of (i) the probability distributions of curvature and topographic index (defined as the ratio of slope to area in log scale) and (ii) characteristic spatial patterns of divergent and convergent topography identified by analyzing the curvature of the terrain. The MRA is first explored using synthetic 1-D and 2-D signals whose CLS are known. It is then validated against a set of MARSSIM (a landscape evolution model) steady state landscapes whose CLS were tuned by varying hillslope diffusivity and simulated noise amplitude. The known CLS match the scales at which the distributions of topographic index and curvature show scaling breaks, indicating that the MRA can identify CLS in landscapes based on the scaling behavior of topographic attributes. Finally, the MRA is deployed to measure the CLS of five natural landscapes using meter resolution digital terrain model data. CLS are inferred from the scaling breaks of the topographic index and curvature distributions and equated with (i) small-scale roughness features and (ii) the hillslope length scale.

Evaluation and parameterization of ATCOR3 topographic correction method for forest cover mapping in mountain areas

NASA Astrophysics Data System (ADS)

Balthazar, Vincent; Vanacker, Veerle; Lambin, Eric F.

2012-08-01

A topographic correction of optical remote sensing data is necessary to improve the quality of quantitative forest cover change analyses in mountainous terrain. The implementation of semi-empirical correction methods requires the calibration of model parameters that are empirically defined. This study develops a method to improve the performance of topographic corrections for forest cover change detection in mountainous terrain through an iterative tuning method of model parameters based on a systematic evaluation of the performance of the correction. The latter was based on: (i) the general matching of reflectances between sunlit and shaded slopes and (ii) the occurrence of abnormal reflectance values, qualified as statistical outliers, in very low illuminated areas. The method was tested on Landsat ETM+ data for rough (Ecuadorian Andes) and very rough mountainous terrain (Bhutan Himalayas). Compared to a reference level (no topographic correction), the ATCOR3 semi-empirical correction method resulted in a considerable reduction of dissimilarities between reflectance values of forested sites in different topographic orientations. Our results indicate that optimal parameter combinations are depending on the site, sun elevation and azimuth and spectral conditions. We demonstrate that the results of relatively simple topographic correction methods can be greatly improved through a feedback loop between parameter tuning and evaluation of the performance of the correction model.

Seafloor Topographic Analysis in Staged Ocean Resource Exploration

NASA Astrophysics Data System (ADS)

Ikeda, M.; Okawa, M.; Osawa, K.; Kadoshima, K.; Asakawa, E.; Sumi, T.

2017-12-01

J-MARES (Research and Development Partnership for Next Generation Technology of Marine Resources Survey, JAPAN) has been designing a low-expense and high-efficiency exploration system for seafloor hydrothermal massive sulfide deposits in "Cross-ministerial Strategic Innovation Promotion Program (SIP)" granted by the Cabinet Office, Government of Japan since 2014. We designed a method to focus mineral deposit prospective area in multi-stages (the regional survey, semi-detail survey and detail survey) by extracted topographic features of some well-known seafloor massive sulfide deposits from seafloor topographic analysis using seafloor topographic data acquired by the bathymetric survey. We applied this procedure to an area of interest more than 100km x 100km over Okinawa Trough, including some known seafloor massive sulfide deposits. In Addition, we tried to create a three-dimensional model of seafloor topography by SfM (Structure from Motion) technique using multiple image data of Chimney distributed around well-known seafloor massive sulfide deposit taken with Hi-Vision camera mounted on ROV in detail survey such as geophysical exploration. Topographic features of Chimney was extracted by measuring created three-dimensional model. As the result, it was possible to estimate shape of seafloor sulfide such as Chimney to be mined by three-dimensional model created from image data taken with camera mounted on ROV. In this presentation, we will discuss about focusing mineral deposit prospective area in multi-stages by seafloor topographic analysis using seafloor topographic data in exploration system for seafloor massive sulfide deposit and also discuss about three-dimensional model of seafloor topography created from seafloor image data taken with ROV.

Topographic Influence on Near-Surface Seismic Velocity in southern California

NASA Astrophysics Data System (ADS)

Lin, J. C.; Moon, S.; Meng, L.; Davis, P. M.

2016-12-01

Near-surface seismic velocity is commonly used to determine subsurface rock structure, properties, and ground-motion amplification. The spatial distribution of Vs30 (shear-wave seismic velocity in the top 30 m of Earth's crust) has been inferred based on the correlations of measured Vs30 with rock types and topographic slopes. Inference of Vs30 based on topographic slopes relies on the assumption that mechanically strong rocks tend to have steep slopes. The topographic slopes can thus be used to infer bedrock strength and seismic velocity. However, due to limited accessibility and logistical difficulties, there are few Vs30 measurements in sites of crystalline rocks that have measurable topographic variations. Thus, the variability of Vs30 with topographic slope for crystalline rocks has not been addressed systematically. In order to examine the local variabilities in near-surface seismic velocity in southern California, we measured the spatial distributions of near-surface seismic velocity at two sites: one in the San Gabriel Mountains (SGM) and one in the San Bernardino Mountains (SBM). Both sites are composed of predominantly crystalline rocks with topographic slopes that range from 0.2 to 0.5. We conducted seismic refraction surveys using sledgehammer-induced impacts on a steel plate along seismic lines that were oriented roughly N-S, 240 m in length with a spacing of 5 m, and with topographic variation including both a local hilltop and valley. Using first P-wave arrivals, we constructed a P-wave seismic tomography down to 50 m. Our results show that P-wave seismic velocity in the SGM site varies significantly within hillslopes and does not linearly correlate with slope, while P-wave seismic velocity in the SBM site shows little variation in the hillslope. In the SGM site, the Vs30 beneath the valley is 25% faster than the Vs30 beneath the hillslope. These results suggest that the local variability of seismic velocity depends on differences in sediment thickness, bedrock fractures, and weathering patterns.

Development of a seamless multisource topographic/bathymetric elevation model of Tampa Bay

USGS Publications Warehouse

Gesch, D.; Wilson, R.

2001-01-01

Many applications of geospatial data in coastal environments require knowledge of the nearshore topography and bathymetry. However, because existing topographic and bathymetric data have been collected independently for different purposes, it has been difficult to use them together at the land/water interface owing to differences in format, projection, resolution, accuracy, and datums. As a first step toward solving the problems of integrating diverse coastal datasets, the U.S. Geological Survey (USGS) and the National Oceanic and Atmospheric Administration (NOAA) are collaborating on a joint demonstration project to merge their data for the Tampa Bay region of Florida. The best available topographic and bathymetric data were extracted from the USGS National Elevation Dataset and the NOAA hydrographic survey database, respectively. Before being merged, the topographic and bathymetric datasets were processed with standard geographic information system tools to place them in a common horizontal reference frame. Also, a key part of the preprocessing was transformation to a common vertical reference through the use of VDatum, a new tool created by NOAA's National Geodetic Survey for vertical datum conversions. The final merged product is a seamless topographic/bathymetric model covering the Tampa Bay region at a grid spacing of 1 arc-second. Topographic LIDAR data were processed and merged with the bathymetry to demonstrate the incorporation of recent third party data sources for several test areas. A primary application of a merged topographic/bathymetric elevation model is for user-defined shoreline delineation, in which the user decides on the tidal condition (for example, low or high water) to be superimposed on the elevation data to determine the spatial position of the water line. Such a use of merged topographic/bathymetric data could lead to the development of a shoreline zone, which could reduce redundant mapping efforts by federal, state, and local agencies by allowing them to customize their portrayals of the shoreline using a standard baseline elevation dataset.

How quickly do earthquakes get locked in the landscape? One year of erosion on El Mayor-Cucapah rupture scarps imaged by repeat terrestrial lidar scans

NASA Astrophysics Data System (ADS)

Elliott, A. J.; Oskin, M. E.; Banesh, D.; Gold, P. O.; Hinojosa-Corona, A.; Styron, R. H.; Taylor, M. H.

2012-12-01

Differencing repeat terrestrial lidar scans of the 2010 M7.2 El Mayor-Cucapah (EMC) earthquake rupture reveals the rapid onset of surface processes that simultaneously degrade and preserve evidence of coseismic fault rupture in the landscape and paleoseismic record. We surveyed fresh fault rupture two weeks after the 4 April 2010 earthquake, then repeated these surveys one year later. We imaged fault rupture through four substrates varying in degree of consolidation and scarp facing-direction, recording modification due to a range of aeolian, fluvial, and hillslope processes. Using lidar-derived DEM rasters to calculate the topographic differences between years results in aliasing errors because GPS uncertainty between years (~1.5cm) exceeds lidar point-spacing (<1.0cm) shifting the raster sampling of the point cloud. Instead, we coregister each year's scans by iteratively minimizing the horizontal and vertical misfit between neighborhoods of points in each raw point cloud. With the misfit between datasets minimized, we compute the vertical difference between points in each scan within a specified neighborhood. Differencing results reveal two variables controlling the type and extent of erosion: cohesion of the substrate controls the degree to which hillslope processes affect the scarp, while scarp facing direction controls whether more effective fluvial erosion can act on the scarp. In poorly consolidated materials, large portions (>50% along strike distance) of the scarp crest are eroded up to 5cm by a combination of aeolian abrasion and diffusive hillslope processes, such as rainsplash and mass-wasting, while in firmer substrate (i.e., bedrock mantled by fault gouge) there is no detectable hillslope erosion. On the other hand, where small gullies cross downhill-facing scarps (<5% along strike distance), fluvial erosion has caused 5-50cm of headward scarp retreat in bedrock. Thus, although aeolian and hillslope processes operate over a greater along-strike distance, fluvial processes concentrated in pre-existing bedrock gullies transport a far greater volume of material across the scarp. Substrate cohesiveness dictates the degree to which erosive processes act to relax the scarp (e.g., gravels erode more easily than bedrock). However, scarp locations that favor fluvial processes suffer rapid, localized erosion of vertical scarp faces, regardless of substrate. Differential lidar also reveals debris cones formed at the base of the scarp below locations of scarp crest erosion. These indicate the rapid growth of a colluvial wedge. Where a fissure occupies the base of the scarp we observe nearly complete in-filling by silt and sand moved by both mass wasting and fluvial deposition, indicating that fissure fills observed in paleoseismic trenches likely bracket the age of an earthquake to within one year. We find no evidence of differential postseismic tectonic deformation across the fault within the ~100m aperture of our surveys.

[Effects of topography on the diversity and distribution pattern of ground plants in karst montane forests in Southwest Guangxi, China].

PubMed

Yuan, Tie-Xiang; Zhang, He-Ping; Ou, Zhi-Yang; Tan, Yi-Bo

2014-10-01

Covariance analysis, curve-fitting, and canonical correspondence analysis (CCA) were used to explore the effects of topographic factors on the plant diversity and distribution patterns of ground flora with different growth forms in the karst mountains of Southwest Guangxi, China. A total of 152 ground plants were recorded. Among them, 37 species were ferns, 44 species herbs, 9 species lianas, and 62 species shrubs. Covariance analysis revealed that altitude significantly correlated with the individual number and richness of ground plants, and slope aspect had a significant effect on richness. Statistical analyses showed a highly significant nonlinear correlation between the individual number or richness of ground plants and altitude. Results of CCA revealed that slope aspect had a significant effect on the distribution pattern of ferns, and slope had a significant effect on the distribution patterns of herbs, lianas and shrubs. Ferns were more sensitive than herbs, lianas and shrubs to changes in heat and soil water caused by aspect. The effect of slope was stronger than that of elevation on soil water and nutrients, and it was the most important topographic factor that affected the distribution patterns of herbs, lianas and shrubs in this region.

Sequential selective same-day suture removal in the management of post-keratoplasty astigmatism

PubMed Central

Fares, U; Mokashi, A A; Elalfy, M S; Dua, H S

2013-01-01

Aims In a previous study, we proposed that corneal topography performed 30–40 min after the initial suture removal can identify the next set of sutures requiring removal, for the treatment of post-keratoplasty astigmatism. The aim of this study was to evaluate the effect of removing subsequent sets of sutures at the same sitting. Methods 10/0 nylon interrupted sutures were placed, to secure the graft–host junction, at the time of keratoplasty. Topography was performed using Pentacam (Oculus) before suture removal. The sutures to be removed in the steep semi-meridians were identified and removed at the slit-lamp biomicroscope. Topography was repeated 30–40 min post suture removal, the new steep semi-meridians determined, and the next set of sutures to be removed were identified and removed accordingly. Topography was repeated 4–6 weeks later and the magnitude of topographic astigmatism was recorded. A paired-samples t-test was used to evaluate the impact of selective suture removal on reducing the magnitude of topographic and refractive astigmatism. Results Twenty eyes of 20 patients underwent sequential selective same-day suture removal (SSSS) after corneal transplantation. This study showed that the topographic astigmatism decreased by about 46.7% (3.68 D) and the refractive astigmatism decreased by about 37.7% (2.61 D) following SSSS. Vector calculations also show a significant reduction of both topographic and refractive astigmatism (P<0.001). Conclusion SSSS may help patients to achieve satisfactory vision more quickly and reduce the number of follow-up visits required post keratoplasty. PMID:23743526

Design and validation of a novel learning tool, the "Anato-Rug," for teaching equine topographical anatomy.

PubMed

Braid, Francesca; Williams, Sarah B; Weller, Renate

2012-01-01

Recognition of anatomical landmarks in live animals (and humans) is key for clinical practice, but students often find it difficult to translate knowledge from dissection-based anatomy onto the live animal and struggle to acquire this vital skill. The purpose of this study was to create and evaluate the use of an equine anatomy rug ("Anato-Rug") depicting topographical anatomy and key areas of lung, heart, and gastrointestinal auscultation, which could be used together with a live horse to aid learning of "live animal" anatomy. Over the course of 2 weeks, 38 third year veterinary students were randomly allocated into an experimental group, revising topographical anatomy from the "Anato-Rug," or a control group, learning topographical anatomy from a textbook. Immediately post activity, both groups underwent a test on live anatomy knowledge and were retested 1 week later. Both groups then completed a questionnaire to ascertain their perceptions of their learning experiences. Results showed that the experimental groups scored significantly higher than the control group at the first testing session, experienced more enjoyment during the activity and gained more confidence in identifying anatomical landmarks than the control group. There was not a significant difference in scores between groups at the second testing session. The findings indicate that the anatomy rug is an effective learning tool that aids understanding, confidence, and enjoyment in learning equine thorax and abdominal anatomy; however it was not better than traditional methods with regards to longer term memory recall. Copyright © 2012 American Association of Anatomists.

Water turbidity optical meter using optical fiber array for topographical distribution analysis

NASA Astrophysics Data System (ADS)

Mutter, Kussay Nugamesh; Mat Jafri, Mohd Zubir; Yeoh, Stephenie

2017-06-01

This work is presenting an analysis study for using optical fiber array as turbidity meter and topographical distribution. Although many studies have been figure out of utilizing optical fibers as sensors for turbidity measurements, still the topographical map of suspended particles in water as rare as expected among all of works in literatures in this scope. The effect of suspended particles are highly affect the water quality which varies according to the source of these particles. A two dimensional array of optical fibers in a 1 litter rectangular plastic container with 2 cm cladding off sensing portion prepared to point out 632.8 nm laser power at each fiber location at the container center. The overall output map of the optical power were found in an inhomogeneous distribution such that the top to down layers of a present water sample show different magnitudes. Each sample prepared by mixing a distilled water with large grains sand, small grains sand, glucose and salt. All with different amount of concentration which measured by refractometer and turbidity meter. The measurements were done in different times i.e. from 10 min to 60 min. This is to let the heavy particles to move down and accumulate at the bottom of the container. The results were as expected which had a gradually topographical map from low power at top layers into high power at bottom layers. There are many applications can be implemented of this study such as transport vehicles fuel meter, to measure the purity of tanks, and monitoring the fluids quality in pipes.

Sequential selective same-day suture removal in the management of post-keratoplasty astigmatism.

PubMed

Fares, U; Mokashi, A A; Elalfy, M S; Dua, H S

2013-09-01

In a previous study, we proposed that corneal topography performed 30-40 min after the initial suture removal can identify the next set of sutures requiring removal, for the treatment of post-keratoplasty astigmatism. The aim of this study was to evaluate the effect of removing subsequent sets of sutures at the same sitting. 10/0 nylon interrupted sutures were placed, to secure the graft-host junction, at the time of keratoplasty. Topography was performed using Pentacam (Oculus) before suture removal. The sutures to be removed in the steep semi-meridians were identified and removed at the slit-lamp biomicroscope. Topography was repeated 30-40 min post suture removal, the new steep semi-meridians determined, and the next set of sutures to be removed were identified and removed accordingly. Topography was repeated 4-6 weeks later and the magnitude of topographic astigmatism was recorded. A paired-samples t-test was used to evaluate the impact of selective suture removal on reducing the magnitude of topographic and refractive astigmatism. Twenty eyes of 20 patients underwent sequential selective same-day suture removal (SSSS) after corneal transplantation. This study showed that the topographic astigmatism decreased by about 46.7% (3.68 D) and the refractive astigmatism decreased by about 37.7% (2.61 D) following SSSS. Vector calculations also show a significant reduction of both topographic and refractive astigmatism (P<0.001). SSSS may help patients to achieve satisfactory vision more quickly and reduce the number of follow-up visits required post keratoplasty.

Topographic Evidence for Eruptive Style Changes and Magma Evolution of Small Plains-style Volcanoes on Earth and Mars

NASA Technical Reports Server (NTRS)

Hughes, S. S.; Sakimoto, S. E.H.; Gregg, T. K. P.; Chadwick, D. J.; Brady, S. B.; Farley, M. A.; Holmes, A. A. .; Semple, A. M.; Weren, S.L.

2004-01-01

Topographic profiles and surface characteristics of small (5 - 25 km diameter) plains-style shield volcanoes on the eastern Snake River Plain (ESRP) provide a method to evaluate eruptive processes and magmatic evolution on Martian volcanic plains. The ESRP is an ideal place to observe Mars-like volcanic features where hundreds of small monogenetic basaltic shields dominate the volcanic-sedimentary depositional sequence, and numerous planetary analogues are evident: coalescent mafic shields, hydromagmatic explosive eruptions, the interaction of lava flows with surficial water and glacial ice, and abundant eolian sand and loess. Single flows cannot be correlated over great distances, and are spatially restricted. These relations are useful for planetary exploration when inferring volcanic evolutionary patterns in lava plains represented by numerous eruptive vents. High spatial resolution imagery and digital topographic data for Mars from MOC, MOLA, and THEMIS is allowing for improvements in the level of detail of stratigraphic mapping of fields of small (< 25 km in diameter) volcanoes as well as studies of the morphological characteristics of individual volcanoes. In order to compare Mars and Earth volcanic features, elevation data from U.S.G.S. 10-meter digital elevation models (DEMs) and high-precision GPS field measurements are used in this study to generate approx. 20m spacing topographic profiles from which slope and surface morphology can be extracted. Average ESRP flank and crater slopes are calculated using 100 - 200 m spacing for optimum comparison to MOLA data, and to reduce the effects of surface irregularities.

Development and Utilization of Regional Oceanic Modeling System (ROMS). Delicacy, Imprecision, and Uncertainty of Oceanic Simulations: An Investigation with the Regional Oceanic Modeling System (ROMS). Submesoscale Flows and Mixing in the Ocean Surface Layer Using the Regional Oceanic Modeling System (ROMS). Eddy Effects in General Circulation, Spanning Mean Currents, Mesoscale Eddies, and Topographic Generation, including Submesoscale Nests

DTIC Science & Technology

2012-09-30

unbalanced motions is likely to occur. Due to an rapidly expanding set of investigation on oceanic flows at submesoscales, it is increasingly clear...Uchiyama, E. M. Lane, J. M. Restrepo, & J. C. McWilliams, 2011: A vortex force analysis of the interaction of rip currents and gravity waves. J. Geophys...particular topographic features, the torque is pervasively positive (cyclonic) along the Stream, in opposition to the anticyclonic wind curl in the

Multidimensional nanomaterials for the control of stem cell fate

NASA Astrophysics Data System (ADS)

Chueng, Sy-Tsong Dean; Yang, Letao; Zhang, Yixiao; Lee, Ki-Bum

2016-09-01

Current stem cell therapy suffers low efficiency in giving rise to differentiated cell lineages, which can replace the original damaged cells. Nanomaterials, on the other hand, provide unique physical size, surface chemistry, conductivity, and topographical microenvironment to regulate stem cell differentiation through multidimensional approaches to facilitate gene delivery, cell-cell, and cell-ECM interactions. In this review, nanomaterials are demonstrated to work both alone and synergistically to guide selective stem cell differentiation. From three different nanotechnology families, three approaches are shown: (1) soluble microenvironmental factors; (2) insoluble physical microenvironment; and (3) nano-topographical features. As regenerative medicine is heavily invested in effective stem cell therapy, this review is inspired to generate discussions in the potential clinical applications of multi-dimensional nanomaterials.

Evaluation of solar angle variation over digital processing of LANDSAT imagery. [Brazil

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Novo, E. M. L. M.

1984-01-01

The effects of the seasonal variation of illumination over digital processing of LANDSAT images are evaluated. Original images are transformed by means of digital filtering to enhance their spatial features. The resulting images are used to obtain an unsupervised classification of relief units. After defining relief classes, which are supposed to be spectrally different, topographic variables (declivity, altitude, relief range and slope length) are used to identify the true relief units existing on the ground. The samples are also clustered by means of an unsupervised classification option. The results obtained for each LANDSAT overpass are compared. Digital processing is highly affected by illumination geometry. There is no correspondence between relief units as defined by spectral features and those resulting from topographic features.

Vector Topographic Map Data over the BOREAS NSA and SSA in SIF Format

NASA Technical Reports Server (NTRS)

Knapp, David; Nickeson, Jaime; Hall, Forrest G. (Editor)

2000-01-01

This data set contains vector contours and other features of individual topographic map sheets from the National Topographic Series (NTS). The map sheet files were received in Standard Interchange Format (SIF) and cover the BOReal Ecosystem-Atmosphere Study (BOREAS) Northern Study Area (NSA) and Southern Study Area (SSA) at scales of 1:50,000 and 1:250,000. The individual files are stored in compressed Unix tar archives.

Estimating net solar radiation using Landsat Thematic Mapper and digital elevation data

NASA Technical Reports Server (NTRS)

Dubayah, R.

1992-01-01

A radiative transfer algorithm is combined with digital elevation and satellite reflectance data to model spatial variability in net solar radiation at fine spatial resolution. The method is applied to the tall-grass prairie of the 16 x 16 sq km FIFE site (First ISLSCP Field Experiment) of the International Satellite Land Surface Climatology Project. Spectral reflectances as measured by the Landsat Thematic Mapper (TM) are corrected for atmospheric and topographic effects using field measurements and accurate 30-m digital elevation data in a detailed model of atmosphere-surface interaction. The spectral reflectances are then integrated to produce estimates of surface albedo in the range 0.3-3.0 microns. This map of albedo is used in an atmospheric and topographic radiative transfer model to produce a map of net solar radiation. A map of apparent net solar radiation is also derived using only the TM reflectance data, uncorrected for topography, and the average field-measured downwelling solar irradiance. Comparison with field measurements at 10 sites on the prairie shows that the topographically derived radiation map accurately captures the spatial variability in net solar radiation, but the apparent map does not.

Scale-location specific relations between soil nutrients and topographic factors in the Fen River Basin, Chinese Loess Plateau

NASA Astrophysics Data System (ADS)

Zhu, Hongfen; Bi, Rutian; Duan, Yonghong; Xu, Zhanjun

2017-06-01

Understanding scale- and location-specific variations of soil nutrients in cultivated land is a crucial consideration for managing agriculture and natural resources effectively. In the present study, wavelet coherency was used to reveal the scale-location specific correlations between soil nutrients, including soil organic matter (SOM), total nitrogen (TN), available phosphorus (AP), and available potassium (AK), as well as topographic factors (elevation, slope, aspect, and wetness index) in the cultivated land of the Fen River Basin in Shanxi Province, China. The results showed that SOM, TN, AP, and AK were significantly inter-correlated, and that the scales at which soil nutrients were correlated differed in different landscapes, and were generally smaller in topographically rougher terrain. All soil nutrients but TN were significantly influenced by the wetness index at relatively large scales (32-72 km) and AK was significantly affected by the aspect at large scales at partial locations, showing localized features. The results of this study imply that the wetness index should be taken into account during farming practices to improve the soil nutrients of cultivated land in the Fen River Basin at large scales.

Modeling Edge Effects of Tillage Erosion

USDA-ARS?s Scientific Manuscript database

Tillage erosion has been recognized as an important factor in redistribution of soil over time and in the development of morphological changes within agricultural fields. Field borders, fences, and vegetated strips that interrupt soil fluxes lead to the creation topographic discontinuities or lynche...

Automatic Imitation

ERIC Educational Resources Information Center

Heyes, Cecilia

2011-01-01

"Automatic imitation" is a type of stimulus-response compatibility effect in which the topographical features of task-irrelevant action stimuli facilitate similar, and interfere with dissimilar, responses. This article reviews behavioral, neurophysiological, and neuroimaging research on automatic imitation, asking in what sense it is "automatic"…

Biodegradable composite scaffolds: a strategy to modulate stem cell behaviour.

PubMed

Armentano, Ilaria; Fortunati, Elena; Mattioli, Samantha; Rescignano, Nicolatta; Kenny, José M

2013-04-01

The application of new biomaterial technologies offers the potential to direct the stem cell fate, targeting the delivery of cells and reducing immune rejection, thereby supporting the development of regenerative medicine. Cells respond to their surrounding structure and with nanostructures exhibit unique proliferative and differentiation properties. This review presents the relevance, the promising perspectives and challenges of current biodegradable composite scaffolds in terms of material properties, processing technology and surface modification, focusing on significant recent patents in these fields. It has been reported how biodegradable porous composite scaffolds can be engineered with initial properties that reproduce the anisotropy, viscoelasticity, tension-compression non-linearity of different tissues by introducing specific nanostructures. Moreover the modulation of electrical, morphological, surface and topographic scaffold properties enables specific stem cell response. Recent advances in nanotechnology have allowed to engineer novel biomaterials with these complexity levels. Understanding the specific biological response triggered by various aspects of the fibrous environment is important in guiding the design and engineering of novel substrates that mimic the native cell matrix interactions in vivo.

Anisotropic forces from spatially constrained focal adhesions mediate contact guidance directed cell migration

PubMed Central

Ray, Arja; Lee, Oscar; Win, Zaw; Edwards, Rachel M.; Alford, Patrick W.; Kim, Deok-Ho; Provenzano, Paolo P.

2017-01-01

Directed migration by contact guidance is a poorly understood yet vital phenomenon, particularly for carcinoma cell invasion on aligned collagen fibres. We demonstrate that for single cells, aligned architectures providing contact guidance cues induce constrained focal adhesion maturation and associated F-actin alignment, consequently orchestrating anisotropic traction stresses that drive cell orientation and directional migration. Consistent with this understanding, relaxing spatial constraints to adhesion maturation either through reduction in substrate alignment density or reduction in adhesion size diminishes the contact guidance response. While such interactions allow single mesenchymal-like cells to spontaneously ‘sense' and follow topographic alignment, intercellular interactions within epithelial clusters temper anisotropic cell–substratum forces, resulting in substantially lower directional response. Overall, these results point to the control of contact guidance by a balance of cell–substratum and cell–cell interactions, modulated by cell phenotype-specific cytoskeletal arrangements. Thus, our findings elucidate how phenotypically diverse cells perceive ECM alignment at the molecular level. PMID:28401884

A 3D insight on the catalytic nanostructuration of few-layer graphene

NASA Astrophysics Data System (ADS)

Melinte, G.; Florea, I.; Moldovan, S.; Janowska, I.; Baaziz, W.; Arenal, R.; Wisnet, A.; Scheu, C.; Begin-Colin, S.; Begin, D.; Pham-Huu, C.; Ersen, O.

2014-06-01

The catalytic cutting of few-layer graphene is nowadays a hot topic in materials research due to its potential applications in the catalysis field and the graphene nanoribbons fabrication. We show here a 3D analysis of the nanostructuration of few-layer graphene by iron-based nanoparticles under hydrogen flow. The nanoparticles located at the edges or attached to the steps on the FLG sheets create trenches and tunnels with orientations, lengths and morphologies defined by the crystallography and the topography of the carbon substrate. The cross-sectional analysis of the 3D volumes highlights the role of the active nanoparticle identity on the trench size and shape, with emphasis on the topographical stability of the basal planes within the resulting trenches and channels, no matter the obstacle encountered. The actual study gives a deep insight on the impact of nanoparticles morphology and support topography on the 3D character of nanostructures built up by catalytic cutting.

Rigorous electromagnetic simulation applied to alignment systems

NASA Astrophysics Data System (ADS)

Deng, Yunfei; Pistor, Thomas V.; Neureuther, Andrew R.

2001-09-01

Rigorous electromagnetic simulation with TEMPEST is used to provide benchmark data and understanding of key parameters in the design of topographical features of alignment marks. Periodic large silicon trenches are analyzed as a function of wavelength (530-800 nm), duty cycle, depth, slope and angle of incidence. The signals are well behaved except when the trench width becomes about 1 micrometers or smaller. Segmentation of the trenches to form 3D marks shows that a segmentation period of 2-5 wavelengths makes the diffraction in the (1,1) direction about 1/3 to 1/2 of that in the main first order (1,0). Transmission alignment marks nanoimprint lithography using the difference between the +1 and -1 reflected orders showed a sensitivity of the difference signal to misalignment of 0.7%/nm for rigorous simulation and 0.5%/nm for simple ray-tracing. The sensitivity to a slanted substrate indentation was 10 nm off-set per degree of tilt from horizontal.

Apollo 16 site geology and impact melts - Implications for the geologic history of the lunar highlands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Spudis, P.D.

1984-11-15

The geology of the Apollo 16 site is reconsidered on the basis of data from photogeology, geochemical remote sensing, and lunar samples. The site possesses an upper surface of anorthositic gabbro and related rocks. Mafic components were deposited as basin ejecta. The events involved in its geological evolution were the Nectaris impact and the Imbrium impact. The role of large, local craters in the history of the region was to serve as topographic depressions to accumulate basin ejecta. The most abundant melt composition at Apollo 16 is an aluminous variety of LKFM basalt supplied by the Nectaris impact as ejectedmore » basin impact melt. The mafic LKFM melt may have been supplied by the Imbrium impact. More aluminous melt groups are probably derived from local, small craters. The remainder of the deposits in the region are composed of anorthositic clastic debris derived from the Nectaris basin, the local crustal substrate, and Imbrium and other basins.« less

Columnar-thin-film acquisition of fingerprint topology

NASA Astrophysics Data System (ADS)

Shaler, Robert C.; Lakhtakia, Akhlesh; Rogers, Jessica W.; Pulsifer, Drew P.; Martín-Palma, Raúl J.

2011-01-01

Fingerprint visualization obtained from physical evidence taken from crime scenes for subsequent comparison typically requires the use of physical and chemical techniques. One physical technique to visualize or develop sebaceous fingerprints on various surfaces employs the deposition of metals such as gold and zinc thereon. We have developed a different vacuum technology: the conformal-evaporated-film-by-rotation technique to deposit dense columnar thin films (CTFs) on latent fingerprints on different types of surfaces. Sample fingerprints, acting as nonplanar substrates, deposited on different surfaces were placed in a vacuum chamber with the fingerprint side facing a boat containing an evaporant material such as chalcogenide glass. Thermal evaporation of the solid material led to the formation of a dense CTF on the fingerprint, thereby capturing the topographical texture with high resolution. Our results show that it is possible to acquire the topology of latent fingerprints on nonporous surfaces. Additionally, deposition of CTFs on overlapping fingerprints suggested ours may be a technique for elucidating the sequence of deposition of the fingerprints at the scene.

Columnar-thin-film acquisition of fingermark topology

NASA Astrophysics Data System (ADS)

Shaler, Robert C.; Lakhtakia, Akhlesh; Rogers, Jessica W.; Pulsifer, Drew P.; Martín-Palma, Raúl J.

2010-08-01

Fingerprint visualization obtained from physical evidence taken from crime scenes for subsequent comparison typically requires the use of physical and chemical techniques. One physical technique to visualize or develop sebaceous fingerprints on various surfaces employs the deposition of metals such as gold and zinc thereon. We have developed a different vacuum technology: the conformal-evaporated-film-by-rotation technique to deposit dense columnar thin films (CTFs) on latent fingerprints on different types of surfaces. Sample fingerprints, acting as nonplanar substrates, deposited on different surfaces were placed in a vacuum chamber with the fingerprint side facing a boat containing an evaporant material such as chalcogenide glass. Thermal evaporation of the solid material led to the formation of a dense CTF on the fingerprint, thereby capturing the topographical texture with high resolution. Our results show that it is possible to acquire the topology of latent fingerprints on non-porous surfaces. Additionally, deposition of CTFs on overlapping fingerprints suggested ours may be a technique for elucidating the sequence of deposition of the fingerprints at the scene.

Evolution of the central sulcus morphology in primates.

PubMed

Hopkins, William D; Meguerditchian, Adrien; Coulon, Olivier; Bogart, Stephanie; Mangin, Jean-François; Sherwood, Chet C; Grabowski, Mark W; Bennett, Allyson J; Pierre, Peter J; Fears, Scott; Woods, Roger; Hof, Patrick R; Vauclair, Jacques

2014-01-01

The central sulcus (CS) divides the pre- and postcentral gyri along the dorsal-ventral plane of which all motor and sensory functions are topographically organized. The motor-hand area of the precentral gyrus or KNOB has been described as the anatomical substrate of the hand in humans. Given the importance of the hand in primate evolution, here we examine the evolution of the motor-hand area by comparing the relative size and pattern of cortical folding of the CS surface area from magnetic resonance images in 131 primates, including Old World monkeys, apes and humans. We found that humans and great apes have a well-formed motor-hand area that can be seen in the variation in depth of the CS along the dorsal-ventral plane. We further found that great apes have relatively large CS surface areas compared to Old World monkeys. However, relative to great apes, humans have a small motor-hand area in terms of both adjusted and absolute surface areas. © 2014 S. Karger AG, Basel.

Solar Radiation Patterns and Glaciers in the Western Himalaya

NASA Astrophysics Data System (ADS)

Dobreva, I. D.; Bishop, M. P.

2013-12-01

Glacier dynamics in the Himalaya are poorly understood, in part due to variations in topography and climate. It is well known that solar radiation is the dominant surface-energy component governing ablation, although the spatio-temporal patterns of surface irradiance have not been thoroughly investigated given modeling limitations and topographic variations including altitude, relief, and topographic shielding. Glaciation and topographic conditions may greatly influence supraglacial characteristics and glacial dynamics. Consequently, our research objectives were to develop a GIS-based solar radiation model that accounts for Earth's orbital, spectral, atmospheric and topographic dependencies, in order to examine the spatio-temporal surface irradiance patterns on glaciers in the western Himalaya. We specifically compared irradiance patterns to supraglacial characteristics and ice-flow velocity fields. Shuttle Radar Mapping Mission (SRTM) 90 m data were used to compute geomorphometric parameters that were input into the solar radiation model. Simulations results for 2013 were produced for the summer ablation season. Direct irradiance, diffuse-skylight, and total irradiance variations were compared and related to glacier altitude profiles of ice velocity and land-surface topographic parameters. Velocity and surface information were derived from analyses of ASTER satellite data. Results indicate that the direct irradiance significantly varies across the surface of glaciers given local topography and meso-scale relief conditions. Furthermore, the magnitude of the diffuse-skylight irradiance varies with altitude and as a result, glaciers in different topographic settings receive different amounts of surface irradiance. Spatio-temporal irradiance patterns appear to be related to glacier surface conditions including supraglacial lakes, and are spatially coincident with ice-flow velocity conditions on some glaciers. Collectively, our results demonstrate that glacier sensitivity to climate change is also locally controlled by numerous multi-scale topographic parameters.

Topographic Organization for Delayed Saccades in Human Posterior Parietal Cortex

PubMed Central

Schluppeck, Denis; Glimcher, Paul; Heeger, David J.

2008-01-01

Posterior parietal cortex (PPC) is thought to play a critical role in decision making, sensory attention, motor intention, and/or working memory. Research on the PPC in non-human primates has focused on the lateral intraparietal area (LIP) in the intraparietal sulcus (IPS). Neurons in LIP respond after the onset of visual targets, just before saccades to those targets, and during the delay period in between. To study the function of posterior parietal cortex in humans, it will be crucial to have a routine and reliable method for localizing specific parietal areas in individual subjects. Here, we show that human PPC contains at least two topographically organized regions, which are candidates for the human homologue of LIP. We mapped the topographic organization of human PPC for delayed (memory guided) saccades using fMRI. Subjects were instructed to fixate centrally while a peripheral target was briefly presented. After a further 3-s delay, subjects made a saccade to the remembered target location followed by a saccade back to fixation and a 1-s inter-trial interval. Targets appeared at successive locations “around the clock” (same eccentricity, ≈30° angular steps), to produce a traveling wave of activity in areas that are topographically organized. PPC exhibited topographic organization for delayed saccades. We defined two areas in each hemisphere that contained topographic maps of the contralateral visual field. These two areas were immediately rostral to V7 as defined by standard retinotopic mapping. The two areas were separated from each other and from V7 by reversals in visual field orientation. However, we leave open the possibility that these two areas will be further subdivided in future studies. Our results demonstrate that topographic maps tile the cortex continuously from V1 well into PPC. PMID:15817644

Microform-related community patterns of methane-cycling microbes in boreal Sphagnum bogs are site specific.

PubMed

Juottonen, Heli; Kotiaho, Mirkka; Robinson, Devin; Merilä, Päivi; Fritze, Hannu; Tuittila, Eeva-Stiina

2015-09-01

Vegetation and water table are important regulators of methane emission in peatlands. Microform variation encompasses these factors in small-scale topographic gradients of dry hummocks, intermediate lawns and wet hollows. We examined methane production and oxidization among microforms in four boreal bogs that showed more variation of vegetation within a bog with microform than between the bogs. Potential methane production was low and differed among bogs but not consistently with microform. Methane oxidation followed water table position with microform, showing higher rates closer to surface in lawns and hollows than in hummocks. Methanogen community, analysed by mcrA terminal restriction fragment length polymorphism and dominated by Methanoregulaceae or 'Methanoflorentaceae', varied strongly with bog. The extent of microform-related variation of methanogens depended on the bog. Methanotrophs identified as Methylocystis spp. in pmoA denaturing gradient gel electrophoresis similarly showed effect of bog, and microform patterns were stronger within individual bogs. Our results suggest that methane-cycling microbes in boreal Sphagnum bogs with seemingly uniform environmental conditions may show strong site-dependent variation. The bog-intrinsic factor may be related to carbon availability but contrary to expectations appears to be unrelated to current surface vegetation, calling attention to the origin of carbon substrates for microbes in bogs. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.