Potential Improvements to Remote Primary Productivity Estimation in the Southern California Current System

NASA Astrophysics Data System (ADS)

Jacox, M.; Edwards, C. A.; Kahru, M.; Rudnick, D. L.; Kudela, R. M.

2012-12-01

A 26-year record of depth integrated primary productivity (PP) in the Southern California Current System (SCCS) is analyzed with the goal of improving satellite net primary productivity (PP) estimates. The ratio of integrated primary productivity to surface chlorophyll correlates strongly to surface chlorophyll concentration (chl0). However, chl0 does not correlate to chlorophyll-specific productivity, and appears to be a proxy for vertical phytoplankton distribution rather than phytoplankton physiology. Modest improvements in PP model performance are achieved by tuning existing algorithms for the SCCS, particularly by empirical parameterization of photosynthetic efficiency in the Vertically Generalized Production Model. Much larger improvements are enabled by improving accuracy of subsurface chlorophyll and light profiles. In a simple vertically resolved production model, substitution of in situ surface data for remote sensing estimates offers only marginal improvements in model r2 and total log10 root mean squared difference, while inclusion of in situ chlorophyll and light profiles improves these metrics significantly. Autonomous underwater gliders, capable of measuring subsurface fluorescence on long-term, long-range deployments, significantly improve PP model fidelity in the SCCS. We suggest their use (and that of other autonomous profilers such as Argo floats) in conjunction with satellites as a way forward for improved PP estimation in coastal upwelling systems.

Vertical nutrient fluxes, turbulence and the distribution of chlorophyll a in the north-eastern North Sea

NASA Astrophysics Data System (ADS)

Bendtsen, Jørgen; Richardson, Katherine

2017-04-01

During summer the northern North Sea is characterized by nutrient rich bottom water masses and nutrient poor surface layers. This explains the distribution of chlorophyll a in the water column where a subsurface maximum, referred to as the deep chlorophyll maximum (DCM), often is present during the growth season. Vertical transport of nutrients between bottom water masses and the well lit surface layer stimulates phytoplankton growth and this generally explains the location of the DCM. However, a more specific understanding of the interplay between vertical transports, nutrient fluxes and phytoplankton abundance is required for identifying the nature of the vertical transport processes, e.g the role of advection versus vertical turbulent diffusion or the role of localized mixing associated with mesoscale eddies. We present results from the VERMIX study in the north-eastern North Sea where nutrients, chlorophyll a and turbulence profiles were measured along five north-south directed transects in July 2016. A high-resolution sampling program, with horizontal distances of 1-10 km between CTD-stations, resolved the horizontal gradients of chlorophyll a across the steep bottom slope from the relatively shallow central North Sea ( 50-80 m) towards the deep Norwegian Trench (>700 m). Low oxygen concentrations in the bottom water masses above the slope indicated enhanced biological production where vertical mixing would stimulate phytoplankton growth around the DCM. Measurements of variable fluorescence (Fv/Fm) showed elevated values in the DCM which demonstrates a higher potential for electron transport in the Photosystem II in the phytoplankton cells, i.e. an indication of nutrient-rich conditions favorable for phytoplankton production. Profiles of the vertical shear and microstructure of temperature and salinity were measured by a VMP-250 turbulence profiler and the vertical diffusion of nutrients was calculated from the estimated vertical turbulent diffusivity and the distributions of nutrients. Results from the five transects and two time-series stations, where vertical profiles were made at hourly intervals, showed that vertical mixing processes above the slope increased the vertical transport of nutrients significantly and mixing above the slope can explain the hydrographic features and the distribution of the DCM in the area.

Short-Term Variability on the Scotian Shelf

NASA Astrophysics Data System (ADS)

Greenan, B.; Petrie, B.; Harrison, G.; Oakey, N.; Strain, P.

2002-12-01

The traditional view of the production cycle on the continental shelf of Nova Scotia features a spring bloom followed by a period of low production and a less intense fall bloom. The annual cycle of primary productivity thus has a large, low frequency component. However, there is increasing evidence that the production cycle has significant variability on shorter time scales. Physical, chemical and biological variability on the Scotian Shelf is examined on a daily to weekly timescale. This is accomplished through the use of a newly developed mooring platform (SeaHorse) that uses surface wave energy to enable the instrument to climb down the mooring wire and then float upwards while sampling the water column. This provides bi-hourly profiles of temperature, salinity, pressure and chlorophyll at one location over month-long periods. Results from the three-week deployment in October 2000 indicate a subsurface chlorophyll maximum below the pycnocline during the first part of the time series. An event occurred in mid-October during which the temperature, salinity and density iso-surfaces rose approximately 25 m. During this event, a small bloom, with peak chlorophyll concentrations of about 2 mg m-3 and duration of several days, began as nutrients were brought into the upper part of the water column by upwelling-favorable winds. SeaWiFS ocean color satellite images were valuable in providing a spatial context for chlorophyll concentrations, however, the lack of temporal resolution due to poor quality images means that this data set provided limited information for short-term chlorophyll variability. Gradient Richardson Numbers were estimated for 2 m vertical bins using SeaHorse CTD data and nearby ADCP current measurements. A trend of decreasing Ri in the ocean mixed layer with increasing surface wind stress is suggested.

Effects of Sediment Microfabric on Benthic Optical Properties

DTIC Science & Technology

2003-09-30

wavelengths. Pigment A is phycoerythrin, B is phycocyanin , and C is chlorophyll a. The large decrease in irradiance at ~750 nm is likely an...Deconvolution methods were utilized to identify a variety of pigments (chlorophyll b and c, phycoerythrin, phycocyanin , fucoxanthin, peridinin, and...for subsurface mapping of phytobenthic communities. Efforts were also focused on preparation of manuscripts for publication. 4 IMPACT/ APPLICATION

Autonomous gliders reveal features of the water column associated with foraging by adelie penguins.

PubMed

Kahl, L Alex; Schofield, Oscar; Fraser, William R

2010-12-01

Despite their strong dependence on the pelagic environment, seabirds and other top predators in polar marine ecosystems are generally studied during their reproductive phases in terrestrial environments. As a result, a significant portion of their life history is understudied which in turn has led to limited understanding. Recent advances in autonomous underwater vehicle (AUV) technologies have allowed satellite-tagged Adélie penguins to guide AUV surveys of the marine environment at the Palmer Long-Term Ecological Research (LTER) site on the western Antarctic Peninsula. Near real-time data sent via Iridium satellites from the AUVs to a centralized control center thousands of miles away allowed scientists to adapt AUV sampling strategies to meet the changing conditions of the subsurface. Such AUV data revealed the water masses and fine-scale features associated with Adélie penguin foraging trips. During this study, the maximum concentration of chlorophyll was between 30 and 50 m deep. Encompassing this peak in the chlorophyll concentration, within the water-column, was a mixture of nutrient-laden Upper Circumpolar Deep (UCDW) and western Antarctic Peninsula winter water (WW). Together, data from the AUV survey and penguin dives reveal that 54% of foraging by Adélie penguins occurs immediately below the chlorophyll maximum. These data demonstrate how bringing together emerging technologies, such as AUVs, with established methods such as the radio-tagging of penguins can provide powerful tools for monitoring and hypothesis testing of previously inaccessible ecological processes. Ocean and atmosphere temperatures are expected to continue increasing along the western Antarctic Peninsula, which will undoubtedly affect regional marine ecosystems. New and emerging technologies such as unmanned underwater vehicles and individually mounted satellite tracking devices will provide the tools critical to documenting and understanding the widespread ecological change expected in polar regions.

From the chlorophyll a in the surface layer to its vertical profile: a Greenland Sea relationship for satellite applications

NASA Astrophysics Data System (ADS)

Cherkasheva, A.; Bracher, A.; Nöthig, E.-M.; Bauerfeind, E.; Melsheimer, C.

2012-11-01

Current estimates of global marine primary production range over a factor of two. At high latitudes, the uncertainty is even larger than globally because here in-situ data and ocean color observations are scarce, and the phytoplankton absorption shows specific characteristics due to the low-light adaptation. The improvement of the primary production estimates requires an accurate knowledge on the chlorophyll vertical profile, which is the basis for most primary production models. To date, studies describing the typical chlorophyll profile based on the chlorophyll in the surface layer did not include the Arctic region or, if it was included, the dependence of the profile shape on surface concentration was neglected. The goal of our study was to derive and describe the typical Greenland Sea chlorophyll profiles, categorized according to the chlorophyll concentration in the surface layer and further monthly resolved. The Greenland Sea was chosen because it is known to be one of the most productive regions of the Arctic and is among the Arctic regions where most chlorophyll field data are available. Our database contained 1199 chlorophyll profiles from R/Vs Polarstern and Maria S Merian cruises combined with data of the ARCSS-PP database (Arctic primary production in-situ database) for the years 1957-2010. The profiles were categorized according to their mean concentration in the surface layer and then monthly median profiles within each category were calculated. The category with the surface layer chlorophyll exceeding 0.7 mg C m-3 showed a clear seasonal cycle with values gradually decreasing from April to August. Chlorophyll profiles maxima moved from lower depths in spring towards the surface in late summer. Profiles with smallest surface values always showed a subsurface chlorophyll maximum with its median magnitude reaching up to three times the surface concentration. While the variability in April, May and June of the Greenland Sea season is following the global non-monthly resolved relationship of the chlorophyll profile to surface chlorophyll concentrations described by the model of Morel and Berthon (1989), it deviates significantly from that in other months (July-September) where the maxima of the chlorophyll are at quite different depths. The Greenland Sea dimensionless monthly median profiles intersect roughly at one common depth within each category. Finally, by applying a Gaussian fitting with 0.1 mg C m-3 surface chlorophyll steps to the median monthly resolved chlorophyll profiles of the defined categories, mathematical approximations have been determined. These will be used as the input to the satellite-based primary production models estimating primary production in Arctic regions.

The Importance of Subsurface Production for Carbon Export - Evidence from Past Oceans

NASA Astrophysics Data System (ADS)

Kemp, A. E. S.

2016-02-01

The maxim of the geological concept of uniformitarianism is "the present is the key to the past", but in the context of our temporally and spatially minimal observational record of modern ocean biogeochemical processes, ancient ocean sediments may provide critical evidence of the key species involved in carbon flux. Specifically, laminated marine sediments that preserve the seasonal flux cycle represent "palaeo-sediment traps" that vastly expand our knowledge of the operations of the marine biological carbon pump. Several key subsurface-dwelling diatom taxa, hitherto thought to be biogeochemically insignificant, are dominant components of ancient marine sediments. For example, the sapropels and equivalent horizons that have accumulated in the Mediterranean over the past 5 million years, contain abundant rhizosolenid and hemiaulid diatoms. These deposits contain the highest concentrations of organic carbon and there is extensive evidence that this was produced by subsurface production in a deep chlorophyll maximum. The highly stratified conditions that led to this subsurface production and carbon flux are in contrast to prevailing views that have held upwelling systems as those with the highest potential for export in the global ocean. Similarly, studies of ancient "greenhouse" periods such as the Cretaceous, with highly stratified oceans and which are potential analogues for future climate change, show evidence for extensive subsurface production. Together with emerging evidence from stratified regions of the modern ocean, such as the subtropical gyres, insights from these ancient oceans suggest that a reappraisal is required of current views on key phytoplankton producers and their role the operation of the marine biological carbon pump.

Influence of UV radiation on chlorophyll, and antioxidant enzymes of wetland plants in different types of constructed wetland.

PubMed

Xu, Defu; Wu, Yinjuan; Li, Yingxue; Howard, Alan; Jiang, Xiaodong; Guan, Yidong; Gao, Yongxia

2014-09-01

A surface- and vertical subsurface-flow-constructed wetland were designed to study the response of chlorophyll and antioxidant enzymes to elevated UV radiation in three types of wetland plants (Canna indica, Phragmites austrail, and Typha augustifolia). Results showed that (1) chlorophyll content of C. indica, P. austrail, and T. augustifolia in the constructed wetland was significantly lower where UV radiation was increased by 10 and 20 % above ambient solar level than in treatment with ambient solar UV radiation (p < 0.05). (2) The malondialdehyde (MDA) content, guaiacol peroxidase (POD), superoxide dismutase (SOD), and catalase (CAT) activities of wetland plants increased with elevated UV radiation intensity. (3) The increased rate of MDA, SOD, POD, and CAT activities of C. indica, P. australis, and T. angustifolia by elevated UV radiation of 10 % was higher in vertical subsurface-flow-constructed wetland than in surface-flow-constructed wetland. The sensitivity of MDA, SOD, POD, and CAT activities of C. indica, P. austrail, and T. augustifolia to the elevated UV radiation was lower in surface-flow-constructed wetland than in the vertical subsurface-flow-constructed wetland, which was related to a reduction in UV radiation intensity through the dissolved organic carbon and suspended matter in the water. C. indica had the highest SOD and POD activities, which implied it is more sensitive to enhanced UV radiation. Therefore, different wetland plants had different antioxidant enzymes by elevated UV radiation, which were more sensitive in vertical subsurface-flow-constructed wetland than in surface-flow-constructed wetland.

Wind effects on coastal zone color scanner chlorophyll patterns in the U.S. Mid-Atlantic Bight during spring 1979

NASA Technical Reports Server (NTRS)

Eslinger, David L.; Iverson, Richard L.

1986-01-01

Coastal zone color scanner (CZCS) chlorophyll concentration increases in the Mid-Atlantic Bight were associated with high wind speeds in continental shelf waters during March and May 1979. Maximum spring CZCS chlorophyll concentrations occurred during April when the water column was not thermally stratified and were spatially and temporally associated with reductions in wind speed both in onshelf and in offshelf regions. Increased chlorophyll concentrations in offshelf waters were associated with high wind speeds during May when a deep chlorophyll maximum was present. Chlorophyll patchiness was observed on length scales typical of those controlled by biological processes during the April low-wind period but not during March or May when wind speeds were greater. The spring CZCS chlorophyll maximum in the southern portion of the Mid-Atlantic Bight occurred in response to a reduction in mixed layer depth caused by decreased wind speeds and not by increased water column stratification.

Observational insights into chlorophyll distributions of subtropical South Indian Ocean eddies

NASA Astrophysics Data System (ADS)

Dufois, François; Hardman-Mountford, Nick J.; Fernandes, Michelle; Wojtasiewicz, Bozena; Shenoy, Damodar; Slawinski, Dirk; Gauns, Mangesh; Greenwood, Jim; Toresen, Reidar

2017-04-01

The South Indian Ocean subtropical gyre has been described as a unique environment where anticyclonic ocean eddies highlight enhanced surface chlorophyll in winter. The processes responsible for this chlorophyll increase in anticyclones have remained elusive, primarily because previous studies investigating this unusual behavior were mostly based on satellite data, which only views the ocean surface. Here we present in situ data from an oceanographic voyage focusing on the mesoscale variability of biogeochemical variables across the subtropical gyre. During this voyage an autonomous biogeochemical profiling float transected an anticyclonic eddy, recording its physical and biological state over a period of 6 weeks. We show that several processes might be responsible for the eddy/chlorophyll relationship, including horizontal advection of productive waters and deeper convective mixing in anticyclonic eddies. While a deep chlorophyll maximum is present in the subtropical Indian Ocean outside anticyclonic eddies, mixing reaches deeper in anticyclonic eddy cores, resulting in increased surface chlorophyll due to the stirring of the deep chlorophyll maximum and possibly resulting in new production from nitrate injection below the deep chlorophyll maximum.

Fronts and eddies: Engines for biogeochemical variability of the Central Red Sea during winter-spring periods

NASA Astrophysics Data System (ADS)

Zarokanellos, Nikolaos; Jones, Burton

2017-04-01

The central Red Sea (CRS) has been shown to be characterized by significant eddy activity throughout the year. In winter, weakened stratification may lead to enhanced vertical exchange contributing to physical and biogeochemical processes. In winter 2014-2015 we began an extended glider time series to monitor a region in the northern CRS where eddy activity is significant. Remote sensing and glider observations that include CTD, oxygen, CDOM and chlorophyll fluorescence, and multi-wavelength optical backscatter, have been used to characterize the effects of winter mixing and eddy activity in this region. During winter, deep mixing driven by surface cooling and strong winds combined with eddy features, can supply nutrients into the upper layer dramatically modifies the environment from its typically stratified conditions. These mixing events disperse the phytoplankton from the deep chlorophyll maximum throughout the upper mixed layer, and increase the chlorophyll signature detected by ocean color imagery. In addition to the mixing, cyclonic eddies in the region can enhance the vertical displacement of deeper, nutrient containing water toward the euphotic zone contributing to increased chlorophyll concentration and biological productivity. Remote sensing analyses indicate that these eddies also contribute to significant horizontal dispersion including the exchange between the open sea and coastal coral reef ecosystems. During the winter mixing periods, diel fluctuations in phytoplankton biomass have been observed indicative of solar driven plankton dynamics. The biogeochemical response to the subsurface physical processes provides a sensitive indicator to the processes that result from the mixing and eddy dynamics - processes that are not necessarily detectable via remote sensing. In order to understand the seasonal responses, but also the interannual influences on these processes, sustained in situ autonomous platform measurements are essential.

A Simulation of Biological Prosesses in the Equatorial Pacific Warm Pool at 165 deg E

NASA Technical Reports Server (NTRS)

McClain, Charles R.; Murtugudde, Ragu; Signorini, Sergio

1998-01-01

A nine-year simulation (1984-1992) of biological processes in the equatorial Pacific Warm Pool is presented. A modified version of the 4-component (phytoplankton, zooplankton, nitrate and ammonium) ecosystem model by McClain et al. (1996) is used. Modifications include use of a spectral model for computation of PAR and inclusion of fecal pellet remineralization and ammonium nitrification. The physical parameters (horizontal and vertical velocities and temperature) required by the ecosystem model were derived from an improved version of the Gent and Cane (1990) ocean general circulation model (Murtugudde and Busalacchi, 1997). Surface downwelling spectral irradiance was estimated using the clear-sky models of Frouin et al. (1989) and Gregg and Carder (1990) and cloud cover information from the International Satellite Cloud Climatology Project (ISCCP). The simulations indicate considerable variability on interannual time scales in all four ecosystem components. In particular, surface chlorophyll concentrations varied by an order of magnitude with maximum values exceeding 0.30 mg/cu m in 1988, 1989, and 1990, and pronounced minimums during 1987 and 1992. The deep chlorophyll maximum ranged between 75 and 125 meters with values occasionally exceeding 0.40 mg/cu m. With the exception of the last half of 1988, surface nitrate was always near depletion. Ammonium exhibited a subsurface maximum just below the DCM with concentrations as high as 0.5 mg-atN/cu m . Total integrated annual primary production varied between 40 and 250 gC/sq m/yr with an annual average of 140 gC/sq m/yr. Finally, the model is used to estimate the mean irradiance at the base of the mixed layer, i.e., the penetration irradiance, which was 18 Watts/sq m over the nine year period. The average mixed layer depth was 42 m.

Influence of Typhoon Matsa on Phytoplankton Chlorophyll-a off East China

PubMed Central

Shao, Jinchao; Han, Guoqi; Yang, Dezhou

2015-01-01

Typhoons can cause strong disturbance, mixing, and upwelling in the upper layer of the oceans. Rich nutrients from the subsurface layer can be brought to the euphotic layer, which will induce the phytoplankton to breed and grow rapidly. In this paper, we investigate the impact of an intense and fast moving tropical storm, Typhoon Matsa, on phytoplankton chlorophyll-a (Chl-a) concentration off East China. By using satellite remote sensing data, we analyze the changes of Chl-a concentration, Sea Surface Temperature (SST) and wind speed in the pre- and post-typhoon periods. We also give a preliminary discussion on the different responses of the Chl-a concentration between nearshore and offshore waters. In nearshore/coastal regions where nutrients are generally rich, the Chl-a maximum occurs usually at the surface or at the layer close to the surface. And, in offshore tropical oligotrophic oceans, the subsurface maxima of Chl-a exist usually in the stratified water column. In an offshore area east of Taiwan, the Chl-a concentration rose gradually in about two weeks after the typhoon. However, in a coastal area north of Taiwan high Chl-a concentration decreased sharply before landfall, rebounded quickly to some degree after landfall, and restored gradually to the pre-typhoon level in about two weeks. The Chl-a concentration presented a negative correlation with the wind speed in the nearshore area during the typhoon, which is opposite to the response in the offshore waters. The phenomena may be attributable to onshore advection of low Chl-a water, coastal downwelling and intensified mixing, which together bring pre-typhoon surface Chl-a downward in the coastal area. In the offshore area, the typhoon may trigger increase of Chl-a concentration through uptake of nutrients by typhoon-induced upwelling and entrainment mixing. PMID:26407324

Seasonal Progression and Interannual Variability of Nutrient and Chlorophyll-a Distributions in the Northern Gulf of Alaska, 1998-2010

NASA Astrophysics Data System (ADS)

Trahanovsky, K.; Whitledge, T. E.

2016-02-01

We examined nutrient and chlorophyll-a (chl) concentrations from bottle samples collected from 0-50 m depth in the Northern Gulf of Alaska along the Seward Line transect on 56 cruises from 1998-2010. We computed monthly average concentrations of macronutrients (N, P, and Si) and chlorophyll-a by depth at four major stations along the transect to describe the regular seasonal progression of the nutricline and typical water column distributions of chlorophyll-a in this seasonally productive, downwelling coastal zone. The across-shelf transect displayed two different patterns of seasonal progression clearly associated with the Alaska Coastal Current (ACC) and Alaskan Stream (AS) current systems. The annual cycle of nutrient drawdown and replenishment is remarkably consistent from year to year within each system and is well correlated with chl measurements. The spring bloom begins earlier and nutrient depletion is sustained longer in the near-shore ACC then in the AS system centered over the shelf break. Chlorophyll-a concentrations frequently peak at 10-20m depth in both systems during July through October, as nutrients remain depleted in the top 10m. Subsurface nutrients (20 - 50 m depth) begin to recover between July and August and then experience a secondary drawdown between August and October, consistent with higher chl levels observed during the fall bloom. Interannual variability in the progression of the nutricline and the relative contribution of subsurface chl to total chl is presented. Physical data demonstrate increasing stratification in this region due to climate change; the implications for nutrient dynamics and primary production are discussed.

Distinct Iron-binding Ligands in the Upper Water Column at Station ALOHA

NASA Astrophysics Data System (ADS)

Bundy, R.; Boiteau, R.; Repeta, D.

2016-02-01

The distribution and chemical properties of iron-binding organic ligands at station ALOHA were examined using a combination of solid phase extraction (SPE) followed by high pressure liquid chromatography-inductively coupled plasma mass spectrometry (HPLC-ICPMS). HPLC-ICPMS ligand measurements were complemented by competitive ligand exchange adsorptive cathodic stripping voltammetry (CLE-ACSV) analysis using salicylaldoxime as the added ligand. By HPLC-ICPMS, we find enhanced concentrations of distinct naturally-occurring polar iron-binding ligands present at the surface and in the chlorophyll maximum. Lower concentrations were found in the subsurface, where a suite of non-polar ligands was detected. Siderophores were present at the deepest depths sampled at station ALOHA, down to 400m. Incubation studies provided evidence for the production of iron-binding ligands associated with nutrient amended phytoplankton growth in surface waters, and as a result of microbial particle remineralization in the subsurface water column. Ligands classes identified via SPE were then compared to CLE-ACSV ligand measurements, as well as the conditional stability constants measured from model polar and non-polar siderophores, yielding insight to the sources of iron-binding ligands throughout the water column at station ALOHA.

Significance of the Autumn Bloom within the Seasonal Cycle of Primary Production in a Temperate Continental Shelf Sea

NASA Astrophysics Data System (ADS)

Wihsgott, Juliane U.; Sharples, Jonathan; Hopkins, Joanne; Woodward, Malcolm; Greenwood, Naomi; Sivyer, Dave; Hull, Tom

2017-04-01

Autumnal phytoplankton blooms are considered characteristic features of the seasonal cycle of primary productivity in most temperate and subpolar oceans. While observations of their occurrence and strength have been documented extensively, their significance within the seasonal cycle of primary production is not well quantified. Our aim is to establish the role the autumn bloom plays within the seasonal cycle and estimate its contribution to the annual primary production of a temperate continental shelf. In particular, we will illustrate that the autumn bloom has the potential to be as productive as the well-studied summer sub-surface chlorophyll maximum (SCM) and the capacity to significantly contribute to the drawdown of atmospheric CO2. We do this by combining long-term, high resolution observations of water column structure, meteorological forcing, nitrate and chlorophyll fluorescence over the entire seasonal cycle observed in a temperate shelf sea. We present a new series of continuous measurements spanning 17 months (March 2014 - July 2015), which were collected in a temperate shelf sea on the North West European Shelf. A long-term mooring array recorded full depth vertical density structure, dynamics and meteorological data as well as surface chlorophyll fluorescence biomass and inorganic nutrient data over a full seasonal cycle at a station 120 km north-east from the continental shelf break. Eight process cruises supplied additional full depth profiles of chlorophyll fluorescence biomass and macronutrients. The breakdown of stratification in 2014 commenced in early October due to increased winds compared to summer months, and a predominantly negative net heat flux (the ocean lost heat to the overlying atmosphere). Vertical mixing in autumn not only transformed the vertical density structure but also the vertical structure of chlorophyll biomass and surface nutrients. The SCM became eroded and instead a vertically homogeneous profile of chlorophyll biomass established itself above the pycnocline. This increased mixing also led to replenishment of surface nutrients and drove enhanced growth, which was almost 4 times stronger than observed during the summer months: We find an increase in depth integrated chlorophyll biomass of ˜50 mg m-2 in autumn 2014 compared to values of ˜20 mg m-2 during the summers of 2014 and 2015.

Concentration and characterization of dissolved organic matter in the surface microlayer and subsurface water of the Bohai Sea, China

NASA Astrophysics Data System (ADS)

Chen, Yan; Yang, Gui-Peng; Wu, Guan-Wei; Gao, Xian-Chi; Xia, Qing-Yan

2013-01-01

A total of 19 sea-surface microlayer and corresponding subsurface samples collected from the Bohai Sea, China in April 2010 were analyzed for chlorophyll a, dissolved organic carbon (DOC) and its major compound classes including total dissolved carbohydrates (TDCHO, including monosaccharides, MCHO, and polysaccharides, PCHO) and total hydrolysable amino acids (THAA, including dissolved free, DFAA, and combined fraction, DCAA). The concentrations of DOC in the subsurface water ranged from 130.2 to 407.7 μM C, with an average of 225.9±75.4 μM C, while those in the surface microlayer varied between 140.1 and 330.9 μM C, with an average of 217.8±56.8 μM C. The concentrations of chlorophyll a, DOC, TDCHO and THAA in the microlayer were, respectively correlated with their subsurface water concentrations, implying that there was a strong exchange effect between the microlayer and subsurface water. The concentrations of DOC and TDCHO were negatively correlated with salinity, respectively, indicating that water mixing might play an important role in controlling the distribution of DOC and TDCHO in the water column. Major constituents of DCAA and DFAA present in the study area were glycine, alanine, glutamic acid, serine and histidine. Principal component analysis (PCA) was applied to examine the complex compositional differences that existed among the sampling sites. Our results showed that DFAA had higher mole percentages of glycine, valine and serine in the microlayer than in the subsurface water, while DCAA tended to have higher mole percentages of glutamic acid, aspartic acid, threonine, arginine, alanine, tyrosine, phenylalanine and leucine in the microlayer. The yields of TDCHO and THAA exhibited similar trends between the microlayer and subsurface water. Carbohydrate species displayed significant enrichment in the microlayer, whereas the DFAA and DCAA exhibited non-uniform enrichment in the microlayer.

An assessment of phytoplankton primary productivity in the Arctic Ocean from satellite ocean color/in situ chlorophyll‐a based models

PubMed Central

Matrai, Patricia A.; Friedrichs, Marjorie A. M.; Saba, Vincent S.; Antoine, David; Ardyna, Mathieu; Asanuma, Ichio; Babin, Marcel; Bélanger, Simon; Benoît‐Gagné, Maxime; Devred, Emmanuel; Fernández‐Méndez, Mar; Gentili, Bernard; Hirawake, Toru; Kang, Sung‐Ho; Kameda, Takahiko; Katlein, Christian; Lee, Sang H.; Lee, Zhongping; Mélin, Frédéric; Scardi, Michele; Smyth, Tim J.; Tang, Shilin; Turpie, Kevin R.; Waters, Kirk J.; Westberry, Toby K.

2015-01-01

Abstract We investigated 32 net primary productivity (NPP) models by assessing skills to reproduce integrated NPP in the Arctic Ocean. The models were provided with two sources each of surface chlorophyll‐a concentration (chlorophyll), photosynthetically available radiation (PAR), sea surface temperature (SST), and mixed‐layer depth (MLD). The models were most sensitive to uncertainties in surface chlorophyll, generally performing better with in situ chlorophyll than with satellite‐derived values. They were much less sensitive to uncertainties in PAR, SST, and MLD, possibly due to relatively narrow ranges of input data and/or relatively little difference between input data sources. Regardless of type or complexity, most of the models were not able to fully reproduce the variability of in situ NPP, whereas some of them exhibited almost no bias (i.e., reproduced the mean of in situ NPP). The models performed relatively well in low‐productivity seasons as well as in sea ice‐covered/deep‐water regions. Depth‐resolved models correlated more with in situ NPP than other model types, but had a greater tendency to overestimate mean NPP whereas absorption‐based models exhibited the lowest bias associated with weaker correlation. The models performed better when a subsurface chlorophyll‐a maximum (SCM) was absent. As a group, the models overestimated mean NPP, however this was partly offset by some models underestimating NPP when a SCM was present. Our study suggests that NPP models need to be carefully tuned for the Arctic Ocean because most of the models performing relatively well were those that used Arctic‐relevant parameters. PMID:27668139

Annual subsurface transport of a red tide dinoflagellate to its bloom area: Water circulation patterns and organism distributions in the Chesapeake Bay

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tyler, M.A.; Seliger, H.H.

1978-03-01

An annual, long range, subsurface transport of Prorocentrum mariae-lebouriae, from the mouth of the Chesapeake Bay to its bloom area in the upper bay, a distance of 240 km, is described and completely documented. Prorocentrum in surface outflowing waters at the mouth of the bay is recruited in late winter into more dense inflowing coastal waters. Strong stratification produced by late winter--early spring surface runoff results in the development of a stable pycnocline. Prorocentrum, now in northward-flowing bottom waters, is retained in these bottom waters. It accumulates in a subsurface concentration maximum below the pycnocline and is transported northward tomore » reach its bloom area in the Patapsco River and north of the Bay Bridge by late spring. The rapidly decreasing depth of the upper bay causes the pycnocline to rise, mixing the previously light-limited Prorocentrum and its nutrient-rich bottom waters to the surface, where rapid growth ensues. Once the dinoflagellate is in surface waters, positive phototaxis, combined with both wind- and tide-driven surface convergences, produce dense surface patches or red tides. Prorocentrum is effectively retained in the bay until late winter by sequential inoculation into the tributary estuaries on the western shore, which exchange relatively slowly with bay waters. By late winter the annual cycle is complete. Prorocentrum is again in surface waters at the mouth of the bay where it is reintroduced into northward-flowing bottom waters. The mechanisms described provide a key to understanding the origins of subsurface chlorophyll maxima and the delivery of toxic dinoflagellates to coastal bloom areas.« less

The 2014-2015 Warming Anomaly in the Southern California Current System: Glider Observations

NASA Astrophysics Data System (ADS)

Zaba, K. D.; Rudnick, D. L.

2016-02-01

During 2014-2015, basin-wide patterns of oceanic and atmospheric anomalies affected surface waters throughout the North Pacific Ocean. We present regional physical and biological effects of the warming, as observed by our autonomous underwater gliders in the southern California Current System (SCCS). Established in 2006, the California Glider Network provides sustained subsurface observations for monitoring the coastal effects of large-scale climate variability. Along repeat sections that extend to 350-500 km in offshore distance and 500 m in depth, Spray gliders have continuously occupied CalCOFI lines 66.7, 80, and 90 for nearly nine years. Following a sawtooth trajectory, the gliders complete each dive in approximately 3 hours and over 3 km. Measured variables include pressure, temperature, salinity, chlorophyll fluorescence, and velocity. For each of the three lines, a comprehensive climatology has been constructed from the multiyear timeseries. The ongoing surface-intensified warming anomaly, which began locally in early 2014 and persists through present, is unprecedented in the glider climatology. Reaching up to 5°C, positive temperature anomalies have been generally confined to the upper 50 m and persistent for over 20 months. The timing of the warming was in phase along each glider line but out of phase with equatorial SST anomalies, suggesting a decoupling of tropical and mid-latitude dynamics. Concurrent physical oceanographic anomalies included a depressed thermocline and high stratification. An induced biological response was apparent in the deepening of the subsurface chlorophyll fluorescence maximum. Ancillary atmospheric data from the NCEP North American Mesoscale (NAM) model indicate that a combination of surface forcing anomalies, namely high downward heat flux and weak wind stress magnitude, caused the unusual warm, downwelling conditions. With a strong El Niño event in the forecast for winter 2015-2016, our sustained glider network will continue to measure the evolution of the shallow warm pool in the SCCS and its potential interaction with ENSO-related anomalies.

Investigating the environmental control of planktonic proteobacterial groups during the phytoplankton spring bloom in two contrasting South Coast UK estuaries

NASA Astrophysics Data System (ADS)

Alshatti, Amani

2017-04-01

Seasonal changes in bacterioplankton populations in two south coast UK estuaries Southampton Water and Christchurch Harbour have been investigated between March and November 2013. Four different phylogenetic bacterial groups with two alphaproteobacteria clades were quantitatively determined in subsurface water samples by Fluorescence in-situ hybridization (FISH) with oligonucleotide probes during phytoplankton bloom periods. During the spring phytoplankton bloom in Southampton water, extracted chlorophyll-a concentrations of between 6.7 and 7.6 µg L-1 were detected while gammaproteobacteria relative abundances (28.7-32.8%) and alphaproteobacteria (35.0-44.0%) dominated the eubacteria with smaller proportions of betaproteobacteria (6.4-13.0%) under high salinity conditions (27.9-32.7). Gammaproteobacteria abundance was significantly negatively correlated with chlorophyll-a concentration (R =-0.5, p < 0.05). In the Christchurch Harbour estuary, betaproteobacteria (21.2-41.1%) dominated throughout the study period in lower salinity waters (1.3-20.7). A significant relationship with negative trend was detected in both estuaries between salinity and betaproteobacteria (R = - 0.95, p < 0.0001). A higher proportion of gammaproteobacteria (29.7-30.3 %) occurred after the spring bloom chlorophyll-a concentration of 5-44.3 µg L-1 and proportion of alphaproteobacteria was highly variable. Archaea were detected in low percentages throughout the blooming season in both estuaries with maximum detected relative abundances of 10.6% in Southampton water and 8.2% in Christchurch harbour. The variation in salinity range therefore between the two estuaries plus the differences in phytoplankton biomass had a marked influence on the dominance of the different proteobacterial groups detected.

Spatio-Temporal Convergence of Maximum Daily Light-Use Efficiency Based on Radiation Absorption by Canopy Chlorophyll

NASA Astrophysics Data System (ADS)

Zhang, Yao; Xiao, Xiangming; Wolf, Sebastian; Wu, Jin; Wu, Xiaocui; Gioli, Beniamino; Wohlfahrt, Georg; Cescatti, Alessandro; van der Tol, Christiaan; Zhou, Sha; Gough, Christopher M.; Gentine, Pierre; Zhang, Yongguang; Steinbrecher, Rainer; Ardö, Jonas

2018-04-01

Light-use efficiency (LUE), which quantifies the plants' efficiency in utilizing solar radiation for photosynthetic carbon fixation, is an important factor for gross primary production estimation. Here we use satellite-based solar-induced chlorophyll fluorescence as a proxy for photosynthetically active radiation absorbed by chlorophyll (APARchl) and derive an estimation of the fraction of APARchl (fPARchl) from four remotely sensed vegetation indicators. By comparing maximum LUE estimated at different scales from 127 eddy flux sites, we found that the maximum daily LUE based on PAR absorption by canopy chlorophyll (ɛmaxchl), unlike other expressions of LUE, tends to converge across biome types. The photosynthetic seasonality in tropical forests can also be tracked by the change of fPARchl, suggesting the corresponding ɛmaxchl to have less seasonal variation. This spatio-temporal convergence of LUE derived from fPARchl can be used to build simple but robust gross primary production models and to better constrain process-based models.

Relationships between Remotely-Sensed Surface Properties and Subsurface Structure in the Ocean.

DTIC Science & Technology

1988-01-06

Investigacion Cientifica y de Educacion 0 Superior de Ensenada (CICESE) surveyed the Gulf of California from 25 October to 4 November 1985 aboard USNS De...north into the Gulf. However, there are many mesoscale variations around these trends, especially in chlorophyll. In the multiple regression analysis

Microplankton trace element contents: implications for mineral limitation of mesozooplankton in an HNLC area

PubMed Central

Baines, Stephen B.; Chen, Xi; Vogt, Stefan; Fisher, Nicholas S.; Twining, Benjamin S.; Landry, Michael R.

2016-01-01

Mesozooplankton production in high-nutrient low-chlorophyll regions of the ocean may be reduced if the trace element concentrations in their food are insufficient to meet growth and metabolic demands. We used elemental microanalysis (SXRF) of single-celled plankton to determine their trace metal contents during a series of semi-Lagrangian drift studies in an HNLC upwelling region, the Costa Rica Dome (CRD). Cells from the surface mixed layer had lower Fe:S but higher Zn:S and Ni:S than those from the subsurface chlorophyll maximum at 22–30 m. Diatom Fe:S values were typically 3-fold higher than those in flagellated cells. The ratios of Zn:C in flagellates and diatoms were generally similar to each other, and to co-occurring mesozooplankton. Estimated Fe:C ratios in flagellates were lower than those in co-occurring mesozooplankton, sometimes by more than 3-fold. In contrast, Fe:C in diatoms was typically similar to that in zooplankton. RNA:DNA ratios in the CRD were low compared with other regions, and were related to total autotrophic biomass and weakly to the discrepancy between Zn:C in flagellated cells and mesozooplankton tissues. Mesozooplankton may have been affected by the trace element content of their food, even though trace metal limitation of phytoplankton was modest at best. PMID:27275029

Nitrate loss in subsurface drainage and corn yield as affected by timing of sidedress nitrogen

USDA-ARS?s Scientific Manuscript database

Using chlorophyll meters, crop sensors, or aerial photography to fine-tune sidedress N application rates have been proposed for optimizing and perhaps reducing overall N fertilizer use on corn (Zea mays L.) and thereby improving water quality by reducing NO3 losses to surface and ground waters. Howe...

Spatio-temporal Convergence of Maximum Daily Light-Use Efficiency Based on Radiation Absorption by Canopy Chlorophyll

DOE PAGES

Zhang, Yao; Xiao, Xiangming; Wolf, Sebastian; ...

2018-04-03

Light-use efficiency (LUE), which quantifies the plants’ efficiency in utilizing solar radiation for photosynthetic carbon fixation, is an important factor for gross primary production (GPP) estimation. Here we use satellite-based solar-induced chlorophyll fluorescence (SIF) as a proxy for photosynthetically active radiation absorbed by chlorophyll (APAR chl) and derive an estimation of the fraction of APAR chl (fPAR chl) from four remotely-sensed vegetation indicators. By comparing maximum LUE estimated at different scales from 127 eddy flux sites, we found that the maximum daily LUE based on PAR absorption by canopy chlorophyll (εmore » $$chl\\atop{max}$$), unlike other expressions of LUE, tends to converge across biome types. The photosynthetic seasonality in tropical forests can also be tracked by the change of fPAR chl, suggesting the corresponding (ε$$chl\\atop{max}$$}$) to have less seasonal variation. Finally, this spatio-temporal convergence of LUE derived from fPAR chl can be used to build simple but robust GPP models and to better constrain process-based models.« less

Spatio-temporal Convergence of Maximum Daily Light-Use Efficiency Based on Radiation Absorption by Canopy Chlorophyll

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Yao; Xiao, Xiangming; Wolf, Sebastian

Light-use efficiency (LUE), which quantifies the plants’ efficiency in utilizing solar radiation for photosynthetic carbon fixation, is an important factor for gross primary production (GPP) estimation. Here we use satellite-based solar-induced chlorophyll fluorescence (SIF) as a proxy for photosynthetically active radiation absorbed by chlorophyll (APAR chl) and derive an estimation of the fraction of APAR chl (fPAR chl) from four remotely-sensed vegetation indicators. By comparing maximum LUE estimated at different scales from 127 eddy flux sites, we found that the maximum daily LUE based on PAR absorption by canopy chlorophyll (εmore » $$chl\\atop{max}$$), unlike other expressions of LUE, tends to converge across biome types. The photosynthetic seasonality in tropical forests can also be tracked by the change of fPAR chl, suggesting the corresponding (ε$$chl\\atop{max}$$}$) to have less seasonal variation. Finally, this spatio-temporal convergence of LUE derived from fPAR chl can be used to build simple but robust GPP models and to better constrain process-based models.« less

Entrainment and mixing of shelf/slope waters in the near-surface Gulf Stream

NASA Astrophysics Data System (ADS)

Lillibridge, J. L., III; Hitchcock, G.; Rossby, T.; Lessard, E.; Mork, M.; Golmen, L.

1990-08-01

An interdisciplinary study of the entrainment of shelf and slope waters in the Gulf Stream front was undertaken in October 1985 northeast of Cape Hatteras. Fifteen hydrographic transects of the Gulf Stream front and of the shelf water intrusion known as Ford water were completed in 2 1/2 days with a towed undulating profiler, the SeaSoar, equipped with a conductivity-temperature-depth probe and a fluorometer. Upstream sections within 50 km of the shelf break show entrainment of surface and subsurface waters along the northern edge of the high-velocity Gulf Stream. The low-salinity core, first observed at 70 m, is subducted to >100 m. The subsurface Ford water is also at a maximum in chlorophyll, fluorescence, and dissolved oxygen and contains a distinct diatom assemblage of nearshore species. Productivity rates in the Ford water may be equivalent to those in slope waters. Expendable current profilers yield an estimated transport for subsurface shelf waters of 1 to 5×105 m3 s-1 and indicate that vertical shear at the depth of maximum static stability is typically 2×10-2 s-1. A bulk Richardson number is estimated over vertical scales of several meters by combining SeaSoar density profiles with velocity shear from concurrent expendable current profiler deployments. The minimum values are generally >1, and only infrequently are they at or below the 0.25 threshold for shear instability. The presence of double-diffusive processes around the low-salinity core of Ford water is indicated by elevated conductivity Cox numbers. The stability parameter "Turner angle" shows that low-salinity Ford water and its associated T-S property front are sites of double-diffusive mixing, given general agreement between the distributions of Turner angle and Cox number. We conclude that double-diffusive processes are more important than shear flow instability in governing cross-isopycnal mixing. However, downstream transit times are so swift that no measurable change or decay occurs in the Ford water. This explains the occurrence of distinct shelf water phytoplankton species within the low-salinity waters downstream of Cape Hatteras.

Coherent stimulated light emission (lasing) in covalently linked chlorophyll dimers

PubMed Central

Hindman, James C.; Kugel, Roger; Wasielewski, Michael R.; Katz, Joseph J.

1978-01-01

The covalently linked chlorophyll a dimer exhibits remarkably different properties in the folded and open configurations. In the folded configuration the absorption maximum is at 695 nm and the fluorescence maximum is at 730 nm. Laser output at 733 and 735 nm is obtained for solutions in wet benzene and 0.1 M ethanol/toluene, respectively. Measurements of fluorescence lineshapes, made with a transverse excited atmospheric (TEA) nitrogen laser for excitation, show the lifetime shortening associated with stimulated emission resulting from appreciable concentrations of molecules in S1 excited states. In contrast, the open dimer has absorption and fluorescence spectra essentially the same as those of chlorophyll a monomer. Unlike either the folded dimer or chlorophyll a monomer, the open dimer shows no laser emission or fluorescene lifetime shortening. It does not appear that the behavior of the open dimer can be explained in terms of excimer or triplet formation or by nonradiative decay processes. It is suggested that absorption of the exciting radiation by S1, leading to the formation of an exciplex or charge transfer state, may be involved. Significantly, no large changes in fluorescence quantum yield or fluorescence lifetime are observed for these dimers as compared to monomer chlorophyll. This suggests that concentration quenching and lifetime shortening in condensed chlorophyll systems involve more than the simple proximity of two chlorophyll molecules. Images PMID:16592524

Remote sensing of chlorophyll and temperature in marine and fresh waters.

NASA Technical Reports Server (NTRS)

Arvesen, J. C.; Millard, J. P.; Weaver, E. C.

1973-01-01

An airborne differential radiometer was demonstrated to be a sensitive, real-time detector of surface chlorophyll content in water bodies. The instrument continuously measures the difference in radiance between two wavelength bands, one centered near the maximum of the blue chlorophyll a absorption region and the other at a reference wavelength outside this region. Flights were made over fresh water lakes, marine waters, and an estuary, and the results were compared with 'ground truth' measurements of chlorophyll concentration. A correlation between output signal of the differential radiometer and the chlorophyll concentration was obtained. Examples of flight data are illustrated. Simultaneous airborne measurements of chlorophyll content and water temperature revealed that variations in chlorophyll are often associated with changes in temperature. Thus, simultaneous sensing of chlorophyll and temperature provides useful information for studies of marine food production, water pollution, and physical processes such as upwelling.

Microbial diversity from chlorophyll maximum, oxygen minimum and bottom zones in the southwestern Atlantic Ocean

NASA Astrophysics Data System (ADS)

Medina-Silva, Renata; de Oliveira, Rafael R.; Pivel, Maria A. G.; Borges, Luiz G. A.; Simão, Taiz L. L.; Pereira, Leandro M.; Trindade, Fernanda J.; Augustin, Adolpho H.; Valdez, Fernanda P.; Eizirik, Eduardo; Utz, Laura R. P.; Groposo, Claudia; Miller, Dennis J.; Viana, Adriano R.; Ketzer, João M. M.; Giongo, Adriana

2018-02-01

Conspicuous physicochemical vertical stratification in the deep sea is one of the main forces driving microbial diversity in the oceans. Oxygen and sunlight availability are key factors promoting microbial diversity throughout the water column. Ocean currents also play a major role in the physicochemical stratification, carrying oxygen down to deeper zones as well as moving deeper water masses up towards shallower depths. Water samples within a 50-km radius in a pockmark location of the southwestern Atlantic Ocean were collected and the prokaryotic communities from different water depths - chlorophyll maximum, oxygen minimum and deep-sea bottom (down to 1355 m) - were described. At phylum level, Proteobacteria were the most frequent in all water depths, Cyanobacteria were statistically more frequent in chlorophyll maximum zone, while Thaumarchaeota were significantly more abundant in both oxygen minimum and bottom waters. The most frequent microorganism in the chlorophyll maximum and oxygen minimum zones was a Pelagibacteraceae operational taxonomic unit (OTU). At the bottom, the most abundant genus was the archaeon Nitrosopumilus. Beta diversity analysis of the 16S rRNA gene sequencing data uncovered in this study shows high spatial heterogeneity among water zones communities. Our data brings important contribution for the characterisation of oceanic microbial diversity, as it consists of the first description of prokaryotic communities occurring in different oceanic water zones in the southwestern Atlantic Ocean.

Chlorophyll maxima in mountain ponds and lakes, Mount Rainier National Park, Washington State, USA

USGS Publications Warehouse

Larson, Gary L.

2000-01-01

Hypolimnetic chlorophyll maxima are common in clear lakes and often occur at depths with between 1 and 0.1% of the surface incident light. Little is known, however, about the concentrations of chlorophyll in thermally unstratified mountain ponds and how these concentrations compare to epilimnetic and hypolimnetic concentrations in mountain lakes. The objectives of this study were to document the concentrations of chlorophyll in thermally unstratified ponds and stratified lakes in Mount Rainier National Park (MORA) and to compare the results with concentrations and distributions of chlorophyll in clear-deep lakes in the Oregon Cascade Range and the Sierra Nevada Range. Thirty-two ponds (<2.5 m deep) and 14 lakes(>9.9 m deep) were sampled primarily during the summers of 1992 to 1996 at MORA. Water samples from near the surface (0.1–0.5 m) of ponds and near the surface and near the bottom of lakes were collected over the deepest part of each system. One exception, Mowich Lake, was sampled at seven depths between the surface and 50 m (Z=58.6 m). Chlorophyll concentrations were low in all systems, but higher in ponds (average 1.8 μg·L−1) than in lakes. Chlorophyll concentrations were higher in hypolimnetic lake samples (average 0.7 μg·L−1) than in epilimnetic lake samples (average 0.2 μg·L−1). Elevated concentrations of chlorophyll in mountain ponds, relative to those in hypolimnetic lake samples, may have been influenced by increased nutrient availability from interactions at the mud-water interface and, in this park, defecation by elk that used many of the ponds as wallows. Mowich Lake showed a chlorophyll maximum (~1.5 μg·L−1) near the lake bottom. Based on Secchi disk clarity readings, the depth of 1.0% incident surface solar radiation was greater than the maximum depths of the ponds and lakes. Comparative data from other clear-deep lakes in the Oregon Cascade Range and Sierra Nevada Range suggested that deep-chlorophyll maxima (~1.5 μg·L−1) occurred at <1.0% and > 0.1% of the incident surface solar radiation, and that the typical maximum depths ranged between 75 and 140 m during thermal stratification.

Evolution of the Marginal Ice Zone: Adaptive Sampling with Autonomous Gliders

DTIC Science & Technology

2015-09-30

kinetic energy (ε). Gliders also sampled dissolved oxygen, optical backscatter ( chlorophyll and CDOM fluorescence) and multi-spectral downwelling...Fig. 2). In the pack, Pacific Summer Water and a deep chlorophyll maximum form distinct layers at roughly 60 m and 80 m, respectively, which become...Sections across the ice edge just prior to recovery, during freeze-up, reveal elevated chlorophyll fluorescence throughout the mixed layer (Fig. 4

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lam, P.J.; Bishop, J.K.B

Here we show that labile particulate iron and manganese concentrations in the upper 500m of the Western Subarctic Pacific, an iron-limited High Nutrient Low Chlorophyll (HNLC) region, have prominent subsurface maxima between 100-200 m, reaching 3 nM and 600 pM, respectively. The subsurface concentration maxima in particulate Fe are characterized by a more reduced oxidation state, suggesting a source from primary volcagenic minerals such as from the Kuril/Kamchatka margin. The systematics of these profiles suggest a consistently strong lateral advection of labile Mn and Fe from redox-mobilized labile sources at the continental shelf supplemented by a more variable source ofmore » Fe from the upper continental slope. This subsurface supply of iron from the continental margin is shallow enough to be accessible to the surface through winter upwelling and vertical mixing, and is likely a key source of bioavailable Fe to the HNLC North Pacific.« less

Chlorophyll a reconstruction from in situ measurements: 1. Method description

NASA Astrophysics Data System (ADS)

Fründt, B.; Dippner, J. W.; Waniek, J. J.

2015-02-01

Understanding the development of primary production is essential for projections of the global carbon cycle in the context of climate change. A chlorophyll a hindcast that serves as a primary production indicator was obtained by fitting in situ measurements of nitrate, chlorophyll a, and temperature. The resulting fitting functions were adapted to a modeled temperature field. The method was applied to observations from the Madeira Basin, in the northeastern part of the oligotrophic North Atlantic Subtropical Gyre and yielded a chlorophyll a field from 1989 to 2008 with a monthly resolution validated with remotely measured surface chlorophyll a data by SeaWiFS. The chlorophyll a hindcast determined with our method resolved the seasonal and interannual variability in the phytoplankton biomass of the euphotic zone as well as the deep chlorophyll maximum. Moreover, it will allow estimation of carbon uptake over long time scales.

Aircraft remote sensing of phytoplankton spatial patterns during the 1989 Joint Global Ocean Flux Study (JGOFS) North Atlantic bloom experiment

NASA Technical Reports Server (NTRS)

Yoder, James A.; Hoge, Frank E.

1991-01-01

Mesoscale phytoplankton chlorophyll variability near the Joint Global Ocean Flux study sites along the 20 W meridian at 34 N, 47 N, and 59 N is discussed. The NASA P-3 aircraft and the Airborne Oceanographic Lidar (AOL) system provides remote sensing support for the North Atlantic Bloom Experiment. The principal instrument of the AOL system is the blue-green laser that stimulates fluorescence from photoplankton chlorophyll, the principal photosynthetic pigment. Other instruments on the NASA P-3 aircraft include up- and down-looking spectrometers, PRT-5 for infrared measurements to determine sea surface temperature, and a system to deploy and record AXBTs to measure subsurface temperature structure.

Helicopter- and ship-based measurements of mesoscale ocean color and thermal features in the marginal ice zone

NASA Astrophysics Data System (ADS)

Tanis, Fred J.; Manley, Thomas O.; Mitchell, Brian G.

1990-09-01

Eddies along the Polar Front/Marginal Ice Zone (MIZ) in Fram Strait are thought to make important contributions to nutrient flux and stimulation of primary productivity. During the Coordinated Eastern Arctic Regional Experiment (CEAREX) helicopter-based measurements of upwelling radiance were made in four visible spectral bands and in the thermal IR across mesoscale features associated with the MIZ. These structures were mapped by flying a grid pattern over the ocean surface to define eddy boundaries. Subsequently, the area was also sampled vertically with CTD and spectral radiometer profilers. Data obtained from a single structure were integrated to construct a three dimensional picture of physical and optical properties. Volume modeling of temperature, salinity, and density fields obtained from CTD survey define the subsurface eddy structure and are in good agreement with infrared derived characteristics. Maximum temperature in the core was found to be four degrees higher than the surrounding water. Volume modeling further indicates that a subsurface layer of Arctic Intermediate Water is intrinsically associated with the surface expression of the eddy. The ratio of upwelling radiances, L(44l)/L(565), was found to be correlated to surface chlorophyll, particulate absorption coefficient, and in water determinations of L using the optical profiling system. The remote sensing reflectance ratio along with the IR sea surface temperature were found to be useful to detect the surface expression of the eddy and to indicate near surface biological and physical processes.

Frontal dynamics boost primary production in the summer stratified Mediterranean sea

NASA Astrophysics Data System (ADS)

Olita, Antonio; Capet, Arthur; Claret, Mariona; Mahadevan, Amala; Poulain, Pierre Marie; Ribotti, Alberto; Ruiz, Simón; Tintoré, Joaquín; Tovar-Sánchez, Antonio; Pascual, Ananda

2017-06-01

Bio-physical glider measurements from a unique process-oriented experiment in the Eastern Alboran Sea (AlborEx) allowed us to observe the distribution of the deep chlorophyll maximum (DCM) across an intense density front, with a resolution (˜ 400 m) suitable for investigating sub-mesoscale dynamics. This front, at the interface between Atlantic and Mediterranean waters, had a sharp density gradient (Δ ρ ˜ 1 kg/m3 in ˜ 10 km) and showed imprints of (sub-)mesoscale phenomena on tracer distributions. Specifically, the chlorophyll-a concentration within the DCM showed a disrupted pattern along isopycnal surfaces, with patches bearing a relationship to the stratification (buoyancy frequency) at depths between 30 and 60 m. In order to estimate the primary production (PP) rate within the chlorophyll patches observed at the sub-surface, we applied the Morel and Andrè (J Geophys Res 96:685-698 1991) bio-optical model using the photosynthetic active radiation (PAR) from Argo profiles collected simultaneously with glider data. The highest production was located concurrently with domed isopycnals on the fresh side of the front, suggestive that (sub-)mesoscale upwelling is carrying phytoplankton patches from less to more illuminated levels, with a contemporaneous delivering of nutrients. Integrated estimations of PP (1.3 g C m-2d-1) along the glider path are two to four times larger than the estimations obtained from satellite-based algorithms, i.e., derived from the 8-day composite fields extracted over the glider trip path. Despite the differences in spatial and temporal sampling between instruments, the differences in PP estimations are mainly due to the inability of the satellite to measure DCM patches responsible for the high production. The deepest (depth > 60 m) chlorophyll patches are almost unproductive and probably transported passively (subducted) from upper productive layers. Finally, the relationship between primary production and oxygen is also investigated. The logarithm of the primary production in the DCM interior (chlorophyll (Chl) > 0.5 mg/m3) shows a linear negative relationship with the apparent oxygen utilization, confirming that high chlorophyll patches are productive. The slope of this relationship is different for Atlantic, mixed interface waters and Mediterranean waters, suggesting the presence of differences in planktonic communities (whether physiological, population, or community level should be object of further investigation) on the different sides of the front. In addition, the ratio of optical backscatter to Chl is high within the intermediate (mixed) waters, which is suggestive of large phytoplankton cells, and lower within the core of the Atlantic and Mediterranean waters. These observations highlight the relevance of fronts in triggering primary production at DCM level and shaping the characteristic patchiness of the pelagic domain. This gains further relevance considering the inadequacy of optical satellite sensors to observe DCM concentrations at such fine scales.

Compact Ocean Models Enable Onboard AUV Autonomy and Decentralized Adaptive Sampling

DTIC Science & Technology

2013-09-30

NCOM) and a biochemical model which includes three nutrients, two phytoplankton groups (diatoms and small phytoplankton ), two groups of zooplankton...properties (chlorophyll-a and absorption due to phytoplankton ), the model was able to reproduce intensity and tendencies in surface and subsurface...following emergence, growth, and decay of phytoplankton bloom patches in Monterey Bay. REFERENCES ● Frolov, S., A. M. Baptista, Y. Zhang, C

Satellite retrievals of leaf chlorophyll and photosynthetic capacity for improved modeling of GPP

USDA-ARS?s Scientific Manuscript database

This study investigates the utility of in-situ and satellite-based leaf chlorophyll (Chl) estimates for quantifying leaf photosynthetic capacity and for constraining model simulations of Gross Primary Productivity (GPP) over a corn field in Maryland, U.S.A. The maximum rate of carboxylation (Vmax) r...

Using in-situ Glider Data to Improve the Interpretation of Time-Series Data in the San Pedro Channel

NASA Astrophysics Data System (ADS)

Teel, E.; Liu, X.; Seegers, B. N.; Ragan, M. A.; Jones, B. H.; Levine, N. M.

2016-02-01

Oceanic time-series have provided insight into biological, physical, and chemical processes and how these processes change over time. However, time-series data collected near coastal zones have not been used as broadly because of regional features that may prevent extrapolation of local results. Though these sites are inherently more affected by local processes, broadening the application of coastal data is crucial for improved modeling of processes such as total carbon drawdown and the development of oxygen minimum zones. Slocum gliders were deployed off the coast of Los Angeles from February to July of 2013 and 2014 providing high temporal and spatial resolution data of the San Pedro Channel (SPC), which includes the San Pedro Ocean Time Series (SPOT). The data were collapsed onto a standardized grid and primary and secondary characteristics of glider profiles were analyzed by principal component analysis to determine the processes impacting SPC and SPOT. The data fell into four categories: active upwelling, offshore intrusion, subsurface bloom, and surface bloom. Waters across the SPC were most similar to offshore water masses, even during the upwelling season when near-shore blooms are commonly observed. The SPOT site was found to be representative of the SPC 86% of the time, suggesting that the findings from SPOT are applicable for the entire SPC. Subsurface blooms were common in both years with co-located chlorophyll and particle maxima, and results suggested that these subsurface blooms contribute significantly to the local primary production. Satellite estimation of integrated chlorophyll was poor, possibly due to the prevalence of subsurface blooms and shallow optical depths during surface blooms. These results indicate that high resolution in-situ glider deployments can be used to determine the spatial domain of coastal time-series data, allowing for broader application of these datasets and greater integration into modeling efforts.

The relationship between concentration of clorophyll-a with skipjack (Katsuwonus pelamis, Linnaeus 1758) production at West Sumatera waters, Indonesia

NASA Astrophysics Data System (ADS)

Usman; Ersti Yulika Sari, T.; Syaifuddin; Audina

2017-01-01

The regression and correlation technic was uses to evaluated the contribution of chlorophyll-a concentration on variation of longline skipjack tuna production. An analysis was performed by placing Chlorophyll-a as predictor and Skipjack (Katsuwonus pelamis, Linnaeus 1758) production as dependent variable, using Chlorophyll-a derived from NPP VIIRS, and CPUE derived from longline fisherman log books for the year of 2013. Chlorophyll-a distribution which derived from NPP VIIRS between 0.13-0.26 mg/m3 whereas maximum CPUE as much as 0,1875 kg/trip in April. The regression equation obtained was CPUE = -1.12 + 11.5 Chl-a. Correlation between chlorophyll-a and CPUE have moderate relationship (r=0.51). From regression equation for those variables showed that the variation of chlorophyll-a had affected about 26% on variation of CPUE, only.

Satellite Remote Sensing of Chlorophyll a in Support of Nutrient Management in the Neuse and Tar-Pamlico River Estuaries

EPA Science Inventory

The North Carolina Environmental Management Commission (EMC) has adopted as a water quality standard that chlorophyll a concentration should not exceed 40 ug/L in sounds, estuaries and other slow-moving waters. Exceedances require regulators to develop a Total Maximum Daily Limit...

Satellite remote sensing of chlorophyll a in support of nutrient management in the Neuse and Tar-Pamlico River (North Carolina) estuaries

EPA Science Inventory

The North Carolina Environmental Management Commission (EMC) has adopted as a water quality standard that chlorophyll a concentration should not exceed 40 ug/L in sounds, estuaries and other slow-moving waters. Exceedances require regulators to develop a Total Maximum Daily Limit...

Optimal Environmental Conditions and Anomalous Ecosystem Responses: Constraining Bottom-up Controls of Phytoplankton Biomass in the California Current System

PubMed Central

Jacox, Michael G.; Hazen, Elliott L.; Bograd, Steven J.

2016-01-01

In Eastern Boundary Current systems, wind-driven upwelling drives nutrient-rich water to the ocean surface, making these regions among the most productive on Earth. Regulation of productivity by changing wind and/or nutrient conditions can dramatically impact ecosystem functioning, though the mechanisms are not well understood beyond broad-scale relationships. Here, we explore bottom-up controls during the California Current System (CCS) upwelling season by quantifying the dependence of phytoplankton biomass (as indicated by satellite chlorophyll estimates) on two key environmental parameters: subsurface nitrate concentration and surface wind stress. In general, moderate winds and high nitrate concentrations yield maximal biomass near shore, while offshore biomass is positively correlated with subsurface nitrate concentration. However, due to nonlinear interactions between the influences of wind and nitrate, bottom-up control of phytoplankton cannot be described by either one alone, nor by a combined metric such as nitrate flux. We quantify optimal environmental conditions for phytoplankton, defined as the wind/nitrate space that maximizes chlorophyll concentration, and present a framework for evaluating ecosystem change relative to environmental drivers. The utility of this framework is demonstrated by (i) elucidating anomalous CCS responses in 1998–1999, 2002, and 2005, and (ii) providing a basis for assessing potential biological impacts of projected climate change. PMID:27278260

Bio-Optical Data Assimilation With Observational Error Covariance Derived From an Ensemble of Satellite Images

NASA Astrophysics Data System (ADS)

Shulman, Igor; Gould, Richard W.; Frolov, Sergey; McCarthy, Sean; Penta, Brad; Anderson, Stephanie; Sakalaukus, Peter

2018-03-01

An ensemble-based approach to specify observational error covariance in the data assimilation of satellite bio-optical properties is proposed. The observational error covariance is derived from statistical properties of the generated ensemble of satellite MODIS-Aqua chlorophyll (Chl) images. The proposed observational error covariance is used in the Optimal Interpolation scheme for the assimilation of MODIS-Aqua Chl observations. The forecast error covariance is specified in the subspace of the multivariate (bio-optical, physical) empirical orthogonal functions (EOFs) estimated from a month-long model run. The assimilation of surface MODIS-Aqua Chl improved surface and subsurface model Chl predictions. Comparisons with surface and subsurface water samples demonstrate that data assimilation run with the proposed observational error covariance has higher RMSE than the data assimilation run with "optimistic" assumption about observational errors (10% of the ensemble mean), but has smaller or comparable RMSE than data assimilation run with an assumption that observational errors equal to 35% of the ensemble mean (the target error for satellite data product for chlorophyll). Also, with the assimilation of the MODIS-Aqua Chl data, the RMSE between observed and model-predicted fractions of diatoms to the total phytoplankton is reduced by a factor of two in comparison to the nonassimilative run.

Sequential resuspension of biofilm components (viruses, prokaryotes and protists) as measured by erodimetry experiments in the Brouage mudflat (French Atlantic coast)

NASA Astrophysics Data System (ADS)

Dupuy, Christine; Mallet, Clarisse; Guizien, Katell; Montanié, Hélène; Bréret, Martine; Mornet, Françoise; Fontaine, Camille; Nérot, Caroline; Orvain, Francis

2014-09-01

Resuspension thresholds in terms of friction velocity were experimentally quantified for the prokaryotes, protists and for the first time, viruses of intertidal mudflat biofilms. Differences in resuspension thresholds could be related to the type, behaviour and size of microorganisms and their association with particles. Free microorganisms (viruses, bacteria and some nanoflagellates) were resuspended by weak flow at friction velocities lower than 2 cm s- 1. Chlorophyll a, some nanoflagellates and attached bacteria were resuspended together with the bed's muddy sediment, which required friction velocities larger than 3 cm s- 1. Diatoms smaller than 60 μm were resuspended at velocities between 3 and 5 cm s- 1, while those larger than 60 μm were resuspended at higher friction velocities (5.5 to 6.5 cm s- 1). The thresholds of resuspension also depended on the micro-scale position of microorganisms in the sediment (horizontal and vertical distributions). In the field, the vertical distribution of chlorophyll a (a proxy of microphytobenthos) was skewed, with a maximum in the first 2 mm of sediment. Along the neap-spring tidal cycle, chlorophyll a revealed an increase in MPB biomass in the first 2 mm of the sediment, in relation to light increases with exposure durations. The horizontal distribution of chlorophyll a could be inferred from erosion experiments. During the initial phase of biofilm growth, the distribution of chlorophyll a seemed horizontally homogeneous, and was uniformly eroded at the beginning of the increase in chlorophyll a. From these results, we can make a hypothesis: in the subsequent phase of biofilm growth until the maximum of emersion duration, the eroded quantity of chlorophyll a was larger than expected based from chlorophyll a vertical distribution, suggesting that biofilm horizontal distribution became patchy and enriched chlorophyll a was preferentially eroded. When emersion duration and biofilm growth decreased, the trend was reversed, and eroded quantity of chlorophyll a was lower than expected from chlorophyll a vertical distribution, suggesting that areas with low chlorophyll a were preferentially eroded. Such erosion patterns when biofilm growth decreased probably resulted from the bulldozing activity of a surficial sediment bioturbator, the gastropod Peringia ulvae. Our study did not directly prove this horizontal distribution but it should be further discussed. This distribution needs to be studied to acquire real evidence of patchy distributions.

Distribution of inorganic and organic nutrients in the South Pacific Ocean - evidence for long-term accumulation of organic matter in nitrogen-depleted waters

NASA Astrophysics Data System (ADS)

Raimbault, P.; Garcia, N.; Cerutti, F.

2007-08-01

The BIOSOPE cruise of the RV Atalante was devoted to study the biogeochemical properties in the South Pacific between the Marquesas Islands (141° W-8° S) and the Chilean upwelling (73° W-34° S). The 8000 km cruise had the opportunity to encounter different trophic situations, and especially strong oligotrophic conditions in the Central South Pacific Gyre (SPG, between 123° W and 101° W). In this isolated region, nitrate was undetectable between surface and 160-180 m, while regenerated nitrogen (nitrite and ammonium) only revealed some traces (<20 nmoles l-1), even in the subsurface maximum. Integrated nitrate over the photic layer, which reached 165 m, was close to zero. In spite of this severe nitrogen-depletion, phosphate was always present at significant concentrations (≍0.1 μmoles l-1), while silicate maintained at low but classical oceanic levels (≍1 μmoles l-1). In contrast, the Marquesas region (MAR) at west and Chilean upwelling (UPW) at east were characterized by large nutrient contents one hundred to one thousand fold higher than in the SPG. Distribution of surface chlorophyll concentration reflected this gradient of nitrate availability. The lowest value (0.023 nmoles l-1) was measured in the centre of the SPG, where integrated chlorophyll over the photic layer was very weak (≍10 mg m-2), since a great part (up to 50%) of the deep chlorophyll maximum (DCM) was located below the 1% light. But, because of the relative high concentration encountered in the DCM (0.2 μg l-1), chlorophyll a content over the photic layer varied much less (by a factor 2 to 5) than the nitrate content. In contrast to chlorophyll a, integrated content of particulate organic matter (POM) remained more or less constant along the investigated area (500 mmoles m-2, 60 mmoles m-2 and 3.5 mmoles m-2 for particulate organic carbon, particulate organic nitrogen and particulate organic phosphorus, respectively), except in the upwelling where values were two fold higher. Extensive comparison has shown that glass fiber GF/F filters efficiency collected particulate chlorophyll, while a significant fraction of POM (up to 50%) passed trough this filter and was retained by 0.2 μm Teflon membrane. The most striking feature was the large accumulation of dissolved organic matter (DOM) in the SPG relative to surrounding waters, especially dissolved organic carbon (DOC) where concentrations were at levels rarely measured in oceanic waters (>100 μmoles l-1). Due to this large pool of DOM over the whole photic layer of the SPG, integrated values followed an opposite geographical pattern than this of inorganic nutrients with a large accumulation within the centre of the SPG. While suspended particulate matter in the mixed layer had C/N ratio largely conform to Redfield stoichiometry (C/N≍6.6), marked deviations were observed in this excess DOM (C/N≍16 to 23). The existence of C-rich dissolved organic matter is recognized as a feature typical of oligotrophic waters, requiring the over consumption of carbon. Thus, in spite of strong nitrate-depletion leading to low chlorophyll biomass, the closed ecosystem of the SPG can produce a large amount of carbon. The implications of this finding are discussed, the conclusion being that, due to the lack of seasonal vertical mixing and weak lateral advection, the dissolved organic carbon biologically produced can be accumulated and stored in the photic layer for a very long period.

Linking mesopelagic prey abundance and distribution to the foraging behavior of a deep-diving predator, the northern elephant seal

NASA Astrophysics Data System (ADS)

Saijo, Daisuke; Mitani, Yoko; Abe, Takuzo; Sasaki, Hiroko; Goetsch, Chandra; Costa, Daniel P.; Miyashita, Kazushi

2017-06-01

The Transition Zone in the eastern North Pacific is important foraging habitat for many marine predators. Further, the mesopelagic depths (200-1000 m) host an abundant prey resource known as the deep scattering layer that supports deep diving predators, such as northern elephant seals, beaked whales, and sperm whales. Female northern elephant seals (Mirounga angustirostris) undertake biannual foraging migrations to this region where they feed on mesopelagic fish and squid; however, in situ measurements of prey distribution and abundance, as well as the subsurface oceanographic features in the mesopelagic Transition Zone are limited. While concurrently tracking female elephant seals during their post-molt migration, we conducted a ship-based oceanographic and hydroacoustic survey and used mesopelagic mid-water trawls to sample the deep scattering layer. We found that the abundance of mesopelagic fish at 400-600 m depth zone was the highest in the 43 °N zone, the primary foraging area of female seals. We identified twenty-nine families of fishes from the mid-water trawls, with energy-rich myctophid fishes dominating by species number, individual number, and wet weight. Biomass of mesopelagic fishes is positively correlated to annual net primary productivity; however, at the temporal and spatial scale of our study, we found no relationship between satellite derived surface primary production and prey density. Instead, we found that the subsurface chlorophyll maximum correlated with the primary elephant seal foraging regions, indicating a stronger linkage between mesopelagic ecosystem dynamics and subsurface features rather than the surface features measured with satellites. Our study not only provides insights on prey distribution in a little-studied deep ocean ecosystem, but shows that northern elephant seals are targeting the dense, species-diverse mesopelagic ecosystem at the gyre-gyre boundary that was previously inferred from their diving behavior.

Mixing and the dynamics of the deep chlorophyll maximum in Lake Tahoe

NASA Technical Reports Server (NTRS)

Abbott, M. R.; Denman, K. L.; Powell, T. M.; Richerson, P. J.; Richards, R. C.; Goldman, C. R.

1984-01-01

Chlorophyll-temperature profiles were measured across Lake Tahoe about every 10 days from April through July 1980. Analysis of the 123 profiles and associated productivity and nutrient data identified three important processes in the formation and dynamics of the deep chlorophyll maximum (DCM): turbulent diffusion, nutrient supply rate, and light availability. Seasonal variation in these three processes resulted in three regimes: a diffusion-dominated regime with a weak DCM, a variable-mixing regime with a pronounced, nutrient supply-dominated DCM, and a stable regime with a deep, moderate light availability-dominated DCM. The transition between the first two regimes occurred in about 10 days, the transition between the last two more gradually over about 3 weeks. The degree of spatial variability of the DCM was highest in the second regime and lowest in the third. These data indicate that the DCM in Lake Tahoe is constant in neither time nor space.

Subsurface water parameters: optimization approach to their determination from remotely sensed water color data.

PubMed

Jain, S C; Miller, J R

1976-04-01

A method, using an optimization scheme, has been developed for the interpretation of spectral albedo (or spectral reflectance) curves obtained from remotely sensed water color data. This method used a two-flow model of the radiation flow and solves for the albedo. Optimization fitting of predicted to observed reflectance data is performed by a quadratic interpolation method for the variables chlorophyll concentration and scattering coefficient. The technique is applied to airborne water color data obtained from Kawartha Lakes, Sargasso Sea, and Nova Scotia coast. The modeled spectral albedo curves are compared to those obtained experimentally, and the computed optimum water parameters are compared to ground truth values. It is shown that the backscattered spectral signal contains information that can be interpreted to give quantitative estimates of the chlorophyll concentration and turbidity in the waters studied.

Ambiguous dependence of fluorescence intensity of trees on chlorophyll concentration

NASA Astrophysics Data System (ADS)

Zavoruev, Valeriy V.; Zavorueva, Elena N.

2014-11-01

Using fluorimetry Junior PAM (Heinz Walz GmbH, Germany) fluorescence parameters of leaves Prinsepia sinensis, Crataegus chlorocarca M, Acer negúndo, Bétula péndula are studied. It was found that the dependence of maximum fluorescence (Fm) plants on the concentration of chlorophyll depends on the sampling method during of vegetation. The correctness of sampling proves during vegetation is substantiated.

Best of both worlds: simultaneous high-light and shade-tolerance adaptations within individual leaves of the living stone Lithops aucampiae.

PubMed

Field, Katie J; George, Rachel; Fearn, Brian; Quick, W Paul; Davey, Matthew P

2013-01-01

"Living stones" (Lithops spp.) display some of the most extreme morphological and physiological adaptations in the plant kingdom to tolerate the xeric environments in which they grow. The physiological mechanisms that optimise the photosynthetic processes of Lithops spp. while minimising transpirational water loss in both above- and below-ground tissues remain unclear. Our experiments have shown unique simultaneous high-light and shade-tolerant adaptations within individual leaves of Lithops aucampiae. Leaf windows on the upper surfaces of the plant allow sunlight to penetrate to photosynthetic tissues within while sunlight-blocking flavonoid accumulation limits incoming solar radiation and aids screening of harmful UV radiation. Increased concentration of chlorophyll a and greater chlorophyll a:b in above-ground regions of leaves enable maximum photosynthetic use of incoming light, while inverted conical epidermal cells, increased chlorophyll b, and reduced chlorophyll a:b ensure maximum absorption and use of low light levels within the below-ground region of the leaf. High NPQ capacity affords physiological flexibility under variable natural light conditions. Our findings demonstrate unprecedented physiological flexibility in a xerophyte and further our understanding of plant responses and adaptations to extreme environments.

Chlorophyll a Covalently Bonded to Organo-Modified Translucent Silica Xerogels: Optimizing Fluorescence and Maximum Loading.

PubMed

García-Sánchez, M A; Serratos, I N; Sosa, R; Tapia-Esquivel, T; González-García, F; Rojas-González, F; Tello-Solís, S R; Palacios-Enriquez, A Y; Esparza Schulz, J M; Arrieta, A

2016-07-22

Chlorophyll is a pyrrolic pigment with important optical properties, which is the reason it has been studied for many years. Recently, interest has been rising with respect to this molecule because of its outstanding physicochemical properties, particularly applicable to the design and development of luminescent materials, hybrid sensor systems, and photodynamic therapy devices for the treatment of cancer cells and bacteria. More recently, our research group has been finding evidence for the possibility of preserving these important properties of substrates containing chlorophyll covalently incorporated within solid pore matrices, such as SiO₂, TiO₂ or ZrO₂ synthesized through the sol-gel process. In this work, we study the optical properties of silica xerogels organo-modified on their surface with allyl and phenyl groups and containing different concentrations of chlorophyll bonded to the pore walls, in order to optimize the fluorescence that these macrocyclic species displays in solution. The intention of this investigation was to determine the maximum chlorophyll a concentration at which this molecule can be trapped inside the pores of a given xerogel and to ascertain if this pigment remains trapped as a monomer, a dimer, or aggregate. Allyl and phenyl groups were deposited on the surface of xerogels in view of their important effects on the stability of the molecule, as well as over the fluorescence emission of chlorophyll; however, these organic groups allow the trapping of either chlorophyll a monomers or dimers. The determination of the above parameters allows finding the most adequate systems for subsequent in vitro or in vivo studies. The characterization of the obtained xerogels was performed through spectroscopic absorption, emission and excitation spectra. These hybrid systems can be employed as mimics of natural systems; the entrapment of chlorophyll inside pore matrices indicates that it is possible to exploit some of the most physicochemical properties of trapped chlorophyll for diverse technological applications. The data herein collected suggest the possibility of applying the developed methodology to other active, captive molecules in order to synthesize new hybrid materials with optimized properties, suitable to be applied in diverse technological fields.

Structure of Infaunal Communities on the Beaufort Sea Shelf and Slope: Insights from Morphological and Environmental DNA Sequencing Approaches

NASA Astrophysics Data System (ADS)

Hardy, S. M.; Bik, H.; Walker, A.; Sharma, J.; Blanchard, A.

2016-02-01

Rapid change is occurring in the Arctic concurrently with increased human activity, yet our knowledge of the structure and function of high-Arctic sediment communities is still rudimentary. The Beaufort Sea is particularly poorly sampled, and largely unexplored at slope depths, providing little information with which to assess the impacts of petroleum exploration activities now beginning in this area. We are investigating diversity and community structure of meio- and macrobenthic infauna on the continental shelf and slope of the Beaufort Sea across a range of depths (50 to 1000 m) using traditional taxonomic and environmental DNA sequencing approaches, and comparing results to additional sites in the adjacent NE Chukchi Sea petroleum lease-sale area. The Beaufort slope is topographically complex and characterized by an east-west gradient in benthic habitat characteristics, with heavy input of terrestrial organic matter particularly in the region of the Mackenzie River delta. Warmer, saltier subsurface Atlantic water masses impact benthic communities at mid-slope depths, likely influencing turnover in community structure observed with depth. Food resources are variable across the region, with very high sediment chlorophyll concentrations at 350 m depth in some areas. Differences in nematode assemblages were detected across the Beaufort Sea shelf/slope, across depths within the Beaufort Sea, and between the Beaufort and adjacent NE Chukchi Sea. These differences were apparent in both morphological and environmental sequencing data. Macrofaunal communities showed variable community structure among transects, with high abundance and high dominance in polychaete assemblages coincident with the chlorophyll maximum. Sequencing data also revealed an abundance of protists in sediments which have been mostly ignored in studies of ecosystem dynamics in this region, and may represent an important component of the food web.

Oxygen distribution and aerobic respiration in the north and south eastern tropical Pacific oxygen minimum zones

NASA Astrophysics Data System (ADS)

Tiano, Laura; Garcia-Robledo, Emilio; Dalsgaard, Tage; Devol, Allan H.; Ward, Bess B.; Ulloa, Osvaldo; Canfield, Donald E.; Peter Revsbech, Niels

2014-12-01

Highly sensitive STOX O2 sensors were used for determination of in situ O2 distribution in the eastern tropical north and south Pacific oxygen minimum zones (ETN/SP OMZs), as well as for laboratory determination of O2 uptake rates of water masses at various depths within these OMZs. Oxygen was generally below the detection limit (few nmol L-1) in the core of both OMZs, suggesting the presence of vast volumes of functionally anoxic waters in the eastern Pacific Ocean. Oxygen was often not detectable in the deep secondary chlorophyll maximum found at some locations, but other secondary maxima contained up to 0.4 μmol L-1. Directly measured respiration rates were high in surface and subsurface oxic layers of the coastal waters, reaching values up to 85 nmol L-1 O2 h-1. Substantially lower values were found at the depths of the upper oxycline, where values varied from 2 to 33 nmol L-1 O2 h-1. Where secondary chlorophyll maxima were found the rates were higher than in the oxic water just above. Incubation times longer than 20 h, in the all-glass containers, resulted in highly increased respiration rates. Addition of amino acids to the water from the upper oxycline did not lead to a significant initial rise in respiration rate within the first 20 h, indicating that the measurement of respiration rates in oligotrophic Ocean water may not be severely affected by low levels of organic contamination during sampling. Our measurements indicate that aerobic metabolism proceeds efficiently at extremely low oxygen concentrations with apparent half-saturation concentrations (Km values) ranging from about 10 to about 200 nmol L-1.

Chlorophyll-a variability in the Seychelles-Chagos Thermocline Ridge: Analysis of a coupled biophysical model

NASA Astrophysics Data System (ADS)

Dilmahamod, A. F.; Hermes, J. C.; Reason, C. J. C.

2016-02-01

The biological variability of the upwelling region of the Seychelles-Chagos Thermocline Ridge (SCTR), both at surface and subsurface levels, is investigated using monthly outputs of a coupled biophysical model from 1958 to 2011. Owing to its large spatial distribution and sensitivity to climate variability, the SCTR is studied as three distinct regions; namely, sub-regions 1 (western; 5°S-12°S, 55°E-65°E), 2 (central; 5°S-12°S, 65°E-75°E) and 3 (eastern; 5°S-12°S, 75°E-90°E). Surface and subsurface chlorophyll-a (Chl-a) exhibit completely different response mechanisms in sub-region 3 compared to sub-regions 1 and 2 during El Niño Southern Oscillation (ENSO) and Indian Ocean Dipole (IOD) events. During the intense 1997/1998 ENSO-IOD event, the high Chl-a tongue observed in the eastern Indian Ocean induces an increase in surface concentration in sub-region 3, whose subsurface variability is also substantially less (more) impacted by downwelling (upwelling) Rossby waves generated by El Niño (La Niña) forcing. After filtering out the annual signal, wavelet analysis of surface Chl-a revealed a significant 6 month periodicity in sub-regions 1 and 2 whereas a 5-year signal dominated in sub-region 3. The latter suggests that sub-region 3 is more prone to different ENSO/IOD influences, due to its proximity to the eastern Indian Ocean. In the unfiltered data, the subsurface Chl-a in sub-region 3 exhibits a strong signal near 1 year, with sub-regions 1 and 2 having a pronounced 6-year and 5-year signals respectively. These analyses show that the SCTR cannot be investigated as a single homogeneous region due to its large spatial distribution and different response mechanisms to climate events. Furthermore, changes in SST, thermocline depth, winds and Chl-a before and after the 1976-1977 climate shift differed across the SCTR, further highlighting the heterogeneity of this sensitive region in the Indian Ocean.

Leaf Optical Properties in Higher Plants: Linking Spectral Characteristics to Stress and Chlorophyll Concentration

NASA Technical Reports Server (NTRS)

Carter, Gregory A.; Knapp, Alan K.

2000-01-01

A number of studies have linked responses in leaf spectral reflectance, transmittance or absorptance to physiological stress. A variety of stressors including dehydration, flooding,freezing, ozone, herbicides, competition, disease, insects and deficiencies in ectomycorrhizal development and N fertilization have been imposed on species ranging from grasses to conifers and deciduous trees. In this cases, the maximum difference in reflectance within the 400 - 850 nm wavelength range between control and stressed states occurred as a reflectance increase at wavelength near 700 nm. In studies that included transmittance and absorptance as well as reflectance, maximum differences occurred as increases and decreases, respectively, near 700 nm. This common optical response to stress could be simulated closely by varying the chlorophyll concentrations in senescent leaves of five species. The optical response to stress near 700 nm, as well as corresponding changes in reflectance that occur in the green-yellow spectrum, can be explained by the general tendency of stress to reduce leaf chlorophyll concentration.

Chlorophyll-Based Organic-Inorganic Heterojunction Solar Cells.

PubMed

Li, Yue; Zhao, Wenjie; Li, Mengzhen; Chen, Gang; Wang, Xiao-Feng; Fu, Xueqi; Kitao, Osamu; Tamiaki, Hitoshi; Sakai, Kotowa; Ikeuchi, Toshitaka; Sasaki, Shin-Ichi

2017-08-10

Solid-state chlorophyll solar cells (CSCs) employing a carboxylated chlorophyll derivative, methyl trans-3 2 -carboxypyropheophorbide a, as a light-harvesting dye sensitizer chlorophyll (DSC) deposited on mesoporous TiO 2 , on which four zinc hydroxylated chlorophyll derivatives were spin-coated for hole transporter chlorophylls (HTCs), are described. Key parameters, including the effective carrier mobility of the HTC films, as determined by the space charge-limited current method, and the frontier molecular orbitals of these DSCs and HTCs, as estimated from cyclic voltammetry and electronic absorption spectra, suggest that both charge separation and carrier transport are favorable. The power conversion efficiencies (PCEs) of the present CSCs with fluorine-doped tin oxide (FTO)/TiO 2 /DSC/HTCs/Ag were determined to follow the order of HTC-1>HTC-2>HTC-3>HTC-4, which coincided perfectly with the order of their hole mobilities. The maximum PCE achieved was 0.86 % with HTC-1. The photovoltaic devices studied herein with two types of chlorophyll derivatives as dye sensitizers and hole transporters provide a unique solution for the utilization of solar energy with a view to truly realizing "green energy". © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Mechanistic assessment of hillslope transpiration controls of diel subsurface flow: a steady-state irrigation approach

Treesearch

H.R. Barnard; C.B. Graham; W.J. van Verseveld; J.R. Brooks; B.J. Bond; J.J. McDonnell

2010-01-01

Mechanistic assessment of how transpiration influences subsurface flow is necessary to advance understanding of catchment hydrology. We conducted a 24-day, steady-state irrigation experiment to quantify the relationships among soil moisture, transpiration and hillslope subsurface flow. Our objectives were to: (1) examine the time lag between maximum transpiration and...

Function of terahertz spectra in monitoring the decomposing process of biological macromolecules and in investigating the causes of photoinhibition.

PubMed

Qu, Yuangang; Zhang, Shuai; Lian, Yuji; Kuang, Tingyun

2017-03-01

Chlorophyll a and β-carotene play an important role in harvesting light energy, which is used to drive photosynthesis in plants. In this study, terahertz (THz) and visible range spectra of chlorophyll a and β-carotene and their changes under light treatment were investigated. The results show that the all THz transmission and absorption spectra of chlorophyll a and β-carotene changed upon light treatment, with the maximum changes at 15 min of illumination indicating the greatest changes of the collective vibrational mode of chlorophyll a and β-carotene. The absorption spectra of chlorophyll a in the visible light region decreased upon light treatment, signifying the degradation of chlorophyll a molecules. It can be inferred from these results that the THz spectra are very sensitive in monitoring the changes of the collective vibrational mode, despite the absence of changes in molecular configuration. The THz spectra can therefore be used to monitor the decomposing process of biological macromolecules; however, visible absorption spectra can only be used to monitor the breakdown extent of biological macromolecules.

An improved ENSO simulation by representing chlorophyll-induced climate feedback in the NCAR Community Earth System Model.

PubMed

Kang, Xianbiao; Zhang, Rong-Hua; Gao, Chuan; Zhu, Jieshun

2017-12-07

The El Niño-Southern oscillation (ENSO) simulated in the Community Earth System Model of the National Center for Atmospheric Research (NCAR CESM) is much stronger than in reality. Here, satellite data are used to derive a statistical relationship between interannual variations in oceanic chlorophyll (CHL) and sea surface temperature (SST), which is then incorporated into the CESM to represent oceanic chlorophyll -induced climate feedback in the tropical Pacific. Numerical runs with and without the feedback (referred to as feedback and non-feedback runs) are performed and compared with each other. The ENSO amplitude simulated in the feedback run is more accurate than that in the non-feedback run; quantitatively, the Niño3 SST index is reduced by 35% when the feedback is included. The underlying processes are analyzed and the results show that interannual CHL anomalies exert a systematic modulating effect on the solar radiation penetrating into the subsurface layers, which induces differential heating in the upper ocean that affects vertical mixing and thus SST. The statistical modeling approach proposed in this work offers an effective and economical way for improving climate simulations.

Impacts of the Changjiang diluted water on sinking processes of particulate organic matters in the East China Sea

NASA Astrophysics Data System (ADS)

Sukigara, Chiho; Mino, Yoshihisa; Tripathy, Sarat Chandra; Ishizaka, Joji; Matsuno, Takeshi

2017-12-01

Intensive surveys with repeated CTD and microstructure turbulent observations, water and sediments sampling as well as onboard incubation and sediment trap experiments were conducted to reveal the nitrogen budget in the center of the East China Sea (ECS) during July 2010 and 2011. Low salinity water (Changjiang Diluted Water, CDW) covered the study area in 2010, but not in 2011. Higher chlorophyll a (chl. a) concentration, primary productivity, and downward particle flux in the upper layer were observed in 2010 than those in 2011. Existence of the CDW resulted in a steep pycnocline and an associated subsurface chl. a maximum (SCM) layer directly beneath the CDW. From chemical analyses of particulate carbon and nitrogen contents and isotope ratios, it became apparent that the particles sunk out the euphotic zone in 2010 was primarily originated in the CDW layer and secondly in the SCM layer. Whereas, in 2011, sinking particles were originated in the surface layer but a part of them were decomposed in the bottom of pycnocline. Our findings indicate that the CDW would supply particles into the deep layer and contribute to the downward transport of materials and the efficiency of biological pump in the ECS.

Measurements of spectral optical properties and their relation to biogeochemical variables and processes in Crater Lake, Crater Lake National Park, OR

USGS Publications Warehouse

Boss, E.S.; Collier, R.; Larson, G.; Fennel, K.; Pegau, W.S.

2007-01-01

Spectral inherent optical properties (IOPs) have been measured at Crater Lake, OR, an extremely clear sub-alpine lake. Indeed Pure water IOPs are major contributors to the total IOPs, and thus to the color of the lake. Variations in the spatial distribution of IOPs were observed in June and September 2001, and reflect biogeochemical processes in the lake. Absorption by colored dissolved organic material increases with depth and between June and September in the upper 300 m. This pattern is consistent with a net release of dissolved organic materials from primary and secondary production through the summer and its photo-oxidation near the surface. Waters fed by a tributary near the lake's rim exhibited low levels of absorption by dissolved organic materials. Scattering is mostly dominated by organic particulate material, though inorganic material is found to enter the lake from the rim following a rain storm. Several similarities to oceanic oligotrophic regions are observed: (a) The Beam attenuation correlates well with particulate organic material (POM) and the relationship is similar to that observed in the open ocean. (b) The specific absorption of colored dissolved organic material has a value similar to that of open ocean humic material. (c) The distribution of chlorophyll with depth does not follow the distribution of particulate organic material due to photo-acclimation resulting in a subsurface pigment maximum located about 50 m below the POM maximum. ?? 2007 Springer Science+Business Media B.V.

Optimalisation of remote sensing algorithm in mapping of chlorophyl-a concentration at Pasuruan coastal based on surface reflectance images of Aqua Modis

NASA Astrophysics Data System (ADS)

Wibisana, H.; Zainab, S.; Dara K., A.

2018-01-01

Chlorophyll-a is one of the parameters used to detect the presence of fish populations, as well as one of the parameters to state the quality of a water. Research on chlorophyll concentrations has been extensively investigated as well as with chlorophyll-a mapping using remote sensing satellites. Mapping of chlorophyll concentration is used to obtain an optimal picture of the condition of waters that is often used as a fishing area by the fishermen. The role of remote sensing is a technological breakthrough in broadly monitoring the condition of waters. And in the process to get a complete picture of the aquatic conditions it would be used an algorithm that can provide an image of the concentration of chlorophyll at certain points scattered in the research area of capture fisheries. Remote sensing algorithms have been widely used by researchers to detect the presence of chlorophyll content, where the channels corresponding to the mapping of chlorophyll -concentrations from Landsat 8 images are canals 4, 3 and 2. With multiple channels from Landsat-8 satellite imagery used for chlorophyll detection, optimum algorithmic search can be formulated to obtain maximum results of chlorophyll-a concentration in the research area. From the calculation of remote sensing algorithm hence can be known the suitable algorithm for condition at coast of Pasuruan, where green channel give good enough correlation equal to R2 = 0,853 with algorithm for Chlorophyll-a (mg / m3) = 0,093 (R (-0) Red - 3,7049, from this result it can be concluded that there is a good correlation of the green channel that can illustrate the concentration of chlorophyll scattered along the coast of Pasuruan

Distribution of picoplankton in the northeastern South China Sea with special reference to the effects of the Kuroshio intrusion and the associated mesoscale eddies.

PubMed

Li, Jiajun; Jiang, Xin; Li, Gang; Jing, Zhiyou; Zhou, Linbin; Ke, Zhixin; Tan, Yehui

2017-07-01

We investigated picoplankton distribution patterns and environmental variables along an east-to-west transect in the northeastern South China Sea (SCS) during late winter 2016, giving us the opportunity to examine the impacts of the Kuroshio intrusion and the associated eddies. The results indicated that the subsurface (50-75m) phytoplankton biomass chlorophyll (Chl a) maximum (SCM) disappeared and was replaced by higher Chl a in the middle part of the transect due to the impacts of the Kuroshio intrusion and mesoscale eddies. Both flow cytometry and pyrosequencing data revealed that picoplankton abundance and community structure were significantly influenced by perturbations in complex physical processes. Picoeukaryotes represented most of the total phytoplankton biomass, and their maximum abundance (>10 4 cellsmL -1 ) occurred within cyclonic eddy-affected regions (Stations 11 and 12), whereas the abundance of Prochlorococcus was the lowest in these regions. Prochlorococcus showed a higher abundance in the Kuroshio-affected area, while Synechococcus was mostly distributed at the upper well-lit depths, with its maximum abundance observed in surface waters (0-30m) adjacent to the cyclonic eddy center. Heterotrophic bacteria (HBA) displayed high abundance along the transect, consistent with the total phytoplankton biomass. Phylogenetic analysis revealed 26 bacterial phyla, with major components belonging to Proteobacteria, Cyanobacteria, Actinobacteria, and Bacteroidetes, as well as SAR406. Notably, relatively more Rhodobacterales, Flavobacteriales, Alteromonadales, and Vibrionales that were distributed in surface waters of the cyclonic eddy center were specifically associated with the phytoplankton (mainly picoeukaryotes) bloom. Our study highlights the impacts of the Kuroshio intrusion in regulating the microbial ecology of the northeastern SCS and the potential coupling between phytoplankton and bacteria. Copyright © 2017 Elsevier B.V. All rights reserved.

Annual cycles of deep-ocean biogeochemical export fluxes in subtropical and subantarctic waters, southwest Pacific Ocean

NASA Astrophysics Data System (ADS)

Nodder, Scott D.; Chiswell, Stephen M.; Northcote, Lisa C.

2016-04-01

The annual cycles of particle fluxes derived from moored sediment trap data collected during 2000-2012 in subtropical (STW) and subantarctic waters (SAW) east of New Zealand are presented. These observations are the most comprehensive export flux time series from temperate Southern Hemisphere latitudes to date. With high levels of variability, fluxes in SAW were markedly lower than in STW, reflecting the picophytoplankton-dominated communities in the iron-limited, high nutrient-low chlorophyll SAW. Austral spring chlorophyll blooms in surface STW were near synchronous with elevated fluxes of bio-siliceous, carbonate, and organic carbon-rich materials to the deep ocean, probably facilitated by diatom and/or coccolithophorid sedimentation. Lithogenic fluxes were also high in STW, compared to SAW, reflecting proximity to the New Zealand landmass. In contrast, the highest biogenic fluxes in SAW occurred in spring when surface chlorophyll concentrations were low, while highest annual chlorophyll concentrations were in summer with no associated flux increase. We hypothesize that the high spring export in SAW results from subsurface chlorophyll accumulation that is not evident from remote-sensing satellites. This material was also rich in biogenic silica, perhaps related to the preferential export of diatoms and other silica-producing organisms, such as silicoflagellates and radiolarians. Organic carbon fluxes in STW are similar to that of other mesotrophic to oligotrophic waters (˜6-7 mg C m-2 d-1), whereas export from SAW is below the global average (˜3 mg C m-2 d-1). Regional differences in flux across the SW Pacific and Tasman region reflect variations in physical processes and ecosystem structure and function.

Annual Cycles of Deep-ocean, Biogeochemical Export Fluxes and Biological Pump Processes in Subtropical and Subantarctic Waters, Southwest Pacific Ocean

NASA Astrophysics Data System (ADS)

Nodder, S.; Chiswell, S.; Northcote, L.

2016-02-01

One of the key aspects of the global carbon cycle is the efficiency and spatio-temporal variability of the biological pump. In this paper, the annual cycles of particle fluxes, derived from moored sediment trap data collected from 2000-12 in subtropical (STW) and subantarctic waters (SAW), east of New Zealand, are presented. These observations are the most comprehensive export flux time-series from temperate Southern Hemisphere latitudes to date. With high levels of variability, fluxes in SAW were markedly lower than in STW, reflecting the picophytoplankton-dominated communities in the iron-limited, high nutrient-low chlorophyll SAW. Austral spring chlorophyll blooms in surface STW were near-synchronous with elevated fluxes of bio-siliceous, carbonate and organic carbon-rich materials to the deep ocean, probably facilitated by diatom sedimentation. Lithogenic fluxes were also high in STW, compared to SAW, reflecting proximity to the New Zealand landmass. In contrast, the highest biogenic fluxes in SAW occurred in spring when surface chlorophyll concentrations were low, while highest annual chlorophyll concentrations were in summer with no associated flux increase. We hypothesize that the high spring export in SAW occurs from subsurface chlorophyll accumulations that are not evident from remote-sensing satellites. This material was also rich in biogenic silica, perhaps related to the preferential export of diatoms and other silica-producing organisms, such as silicoflagellates and radiolarians. Particle fluxes in STW are similar to that of other mesotrophic to oligotrophic waters ( 6-7 mgC m-2 d-1), whereas export from SAW is below global averages ( 3 mgC m-2 d-1), and is characterized by carbonate-dominated and prominent bio-siliceous deposition.

A new parameterization for surface ocean light attenuation in Earth System Models: assessing the impact of light absorption by colored detrital material

NASA Astrophysics Data System (ADS)

Kim, G. E.; Pradal, M.-A.; Gnanadesikan, A.

2015-03-01

Light limitation can affect the distribution of biota and nutrients in the ocean. Light absorption by colored detrital material (CDM) was included in a fully coupled Earth System Model using a new parameterization for shortwave attenuation. Two model runs were conducted, with and without light attenuation by CDM. In a global average sense, greater light limitation associated with CDM increased surface chlorophyll, biomass and nutrients together. These changes can be attributed to the movement of biological productivity higher up the water column, which increased surface chlorophyll and biomass while simultaneously decreasing total biomass. Meanwhile, the reduction in biomass resulted in greater nutrient availability throughout the water column. Similar results were found on a regional scale in an analysis of the oceans by biome. In coastal regions, surface chlorophyll increased by 35% while total integrated phytoplankton biomass diminished by 18%. The largest relative increases in modeled surface chlorophyll and biomass in the open ocean were found in the equatorial biomes, while largest decreases in depth-integrated biomass and chlorophyll were found in the subpolar and polar biomes. This mismatch of surface and subsurface trends and their regional dependence was analyzed by comparing the competing factors of diminished light availability and increased nutrient availability on phytoplankton growth in the upper 200 m. Overall, increases in surface biomass were expected to accompany greater nutrient uptake and therefore diminish surface nutrients, but changes in light limitation decoupled trends between these two variables. Understanding changes in biological productivity requires both surface and depth-resolved information. Surface trends may be minimal or of the opposite sign to depth-integrated amounts, depending on the vertical structure of phytoplankton abundance.

The effectiveness of laser diode induction to Carica Papaya L. chlorophyll extract to be ROS generating in the photodynamic inactivation mechanisms for C.albicans biofilms

NASA Astrophysics Data System (ADS)

Dewi Astuty, S.; Baktir, A.

2017-05-01

Research on the effectiveness of photo inactivation of C.albicans biofilms led by a-PDT system mediated by chlorophyll-diode-laser-induced was done. This research was done using in vitro technique in order to effectively determine chlorophyll extract of ROS-generated Carica Papaya L. using in situ technique. This technique induced laser diode on different dose and C. albicans with reduced degree. This research is a preliminary study in efforts to find anew sensitizer agent candidate made of chlorophyll extract and antifungal of Carica Papaya L. The effectiveness of eradication has been tested with MDA’s content and OD of biomass biofilms as well as analyzed using ANOVA and Tukey Test (α=0.05). The characteristic of chlorophyll extract of Carica Papaya L. has maximum absorptions on blue areas (λmax = 420 nm) and red areas (λmax = 670 nm). The MIC value of Carica Papaya L.’schlorophyll extract against C. albicans planktonic and biofilms cell is 63.8 μM and 31.9 μM respectively. The result shows that treatment using laser which was combined with chlorophyll extract is more effective than that with laser only or chlorophyll extract only. The treatment using laser combined with chlorophyll extract obtained more than 65% (α=0.05) (more than that of negative control) for P2L1 group with OD595 0.915. The MDA’s content showed that group of laser which was mediated with chlorophyll extract had larger values than group of laser or chlorophyll extract only.

High-Performance Liquid Chromatography (HPLC) Measurements of Phytoplankton Pigment Distributions of Ocean Waters

DTIC Science & Technology

1988-11-01

coccolithophorids 19. ABSTRACT (CanMyw on rviosfe Inhcesway aM den*t byblock nmber) Until the application of high-performance liquid chromatography (HPLC) to... phycocyanin , has a maximum 0 01 absorption peak. The spectra for the 008 chlorophyll degradation products (chlo- 0.06 rophyllides, phaeophorbides and...phaeo- phytins) which are not shown in Figure z I have similar absorption maxima as their associated chlorophylls, 002 , Until the application of high

Chlorophyll b degradation by chlorophyll b reductase under high-light conditions.

PubMed

Sato, Rei; Ito, Hisashi; Tanaka, Ayumi

2015-12-01

The light-harvesting chlorophyll a/b binding protein complex of photosystem II (LHCII) is the main antenna complex of photosystem II (PSII). Plants change their LHCII content depending on the light environment. Under high-light conditions, the content of LHCII should decrease because over-excitation damages the photosystem. Chlorophyll b is indispensable for accumulating LHCII, and chlorophyll b degradation induces LHCII degradation. Chlorophyll b degradation is initiated by chlorophyll b reductase (CBR). In land plants, NON-YELLOW COLORING 1 (NYC1) and NYC1-Like (NOL) are isozymes of CBR. We analyzed these mutants to determine their functions under high-light conditions. During high-light treatment, the chlorophyll a/b ratio was stable in the wild-type (WT) and nol plants, and the LHCII content decreased in WT plants. The chlorophyll a/b ratio decreased in the nyc1 and nyc1/nol plants, and a substantial degree of LHCII was retained in nyc1/nol plants after the high-light treatment. These results demonstrate that NYC1 degrades the chlorophyll b on LHCII under high-light conditions, thus decreasing the LHCII content. After the high-light treatment, the maximum quantum efficiency of the PSII photochemistry was lower in nyc1 and nyc1/nol plants than in WT and nol plants. A larger light-harvesting system would damage PSII in nyc1 and nyc1/nol plants. The fluorescence spectroscopy of the leaves indicated that photosystem I was also damaged by the excess LHCII in nyc1/nol plants. These observations suggest that chlorophyll b degradation by NYC1 is the initial reaction for the optimization of the light-harvesting capacity under high-light conditions.

Ocean Primary Production Estimates from Terra MODIS and Their Dependency on Satellite Chlorophyll Alpha Algorithms

NASA Technical Reports Server (NTRS)

Essias, Wayne E.; Abbott, Mark; Carder, Kendall; Campbell, Janet; Clark, Dennis; Evans, Robert; Brown, Otis; Kearns, Ed; Kilpatrick, Kay; Balch, W.

2003-01-01

Simplistic models relating global satellite ocean color, temperature, and light to ocean net primary production (ONPP) are sensitive to the accuracy and limitations of the satellite estimate of chlorophyll and other input fields, as well as the primary productivity model. The standard MODIS ONPP product uses the new semi-analytic chlorophyll algorithm as its input for two ONPP indexes. The three primary MODIS chlorophyll Q estimates from MODIS, as well as the SeaWiFS 4 chlorophyll product, were used to assess global and regional performance in estimating ONPP for the full mission, but concentrating on 2001. The two standard ONPP algorithms were examined with 8-day and 39 kilometer resolution to quantify chlorophyll algorithm dependency of ONPP. Ancillary data (MLD from FNMOC, MODIS SSTD1, and PAR from the GSFC DAO) were identical. The standard MODIS ONPP estimates for annual production in 2001 was 59 and 58 GT C for the two ONPP algorithms. Differences in ONPP using alternate chlorophylls were on the order of 10% for global annual ONPP, but ranged to 100% regionally. On all scales the differences in ONPP were smaller between MODIS and SeaWiFS than between ONPP models, or among chlorophyll algorithms within MODIS. Largest regional ONPP differences were found in the Southern Ocean (SO). In the SO, application of the semi-analytic chlorophyll resulted in not only a magnitude difference in ONPP (2x), but also a temporal shift in the time of maximum production compared to empirical algorithms when summed over standard oceanic areas. The resulting increase in global ONPP (6-7 GT) is supported by better performance of the semi-analytic chlorophyll in the SO and other high chlorophyll regions. The differences are significant in terms of understanding regional differences and dynamics of ocean carbon transformations.

Regional variability among nonlinear chlorophyll-phosphorus relationships in lakes

USGS Publications Warehouse

Filstrup, Christopher T.; Wagner, Tyler; Soranno, Patricia A.; Stanley, Emily H.; Stow, Craig A.; Webster, Katherine E.; Downing, John A.

2014-01-01

The relationship between chlorophyll a (Chl a) and total phosphorus (TP) is a fundamental relationship in lakes that reflects multiple aspects of ecosystem function and is also used in the regulation and management of inland waters. The exact form of this relationship has substantial implications on its meaning and its use. We assembled a spatially extensive data set to examine whether nonlinear models are a better fit for Chl a—TP relationships than traditional log-linear models, whether there were regional differences in the form of the relationships, and, if so, which regional factors were related to these differences. We analyzed a data set from 2105 temperate lakes across 35 ecoregions by fitting and comparing two different nonlinear models and one log-linear model. The two nonlinear models fit the data better than the log-linear model. In addition, the parameters for the best-fitting model varied among regions: the maximum and lower Chl aasymptotes were positively and negatively related to percent regional pasture land use, respectively, and the rate at which chlorophyll increased with TP was negatively related to percent regional wetland cover. Lakes in regions with more pasture fields had higher maximum chlorophyll concentrations at high TP concentrations but lower minimum chlorophyll concentrations at low TP concentrations. Lakes in regions with less wetland cover showed a steeper Chl a—TP relationship than wetland-rich regions. Interpretation of Chl a—TP relationships depends on regional differences, and theory and management based on a monolithic relationship may be inaccurate.

How Diffusivity, Thermocline and Incident Light Intensity Modulate the Dynamics of Deep Chlorophyll Maximum in Tyrrhenian Sea

PubMed Central

Valenti, Davide; Denaro, Giovanni; Spagnolo, Bernardo; Conversano, Fabio; Brunet, Christophe

2015-01-01

During the last few years theoretical works have shed new light and proposed new hypotheses on the mechanisms which regulate the spatio-temporal behaviour of phytoplankton communities in marine pelagic ecosystems. Despite this, relevant physical and biological issues, such as effects of the time-dependent mixing in the upper layer, competition between groups, and dynamics of non-stationary deep chlorophyll maxima, are still open questions. In this work, we analyze the spatio-temporal behaviour of five phytoplankton populations in a real marine ecosystem by using a one-dimensional reaction-diffusion-taxis model. The study is performed, taking into account the seasonal variations of environmental variables, such as light intensity, thickness of upper mixed layer and profiles of vertical turbulent diffusivity, obtained starting from experimental findings. Theoretical distributions of phytoplankton cell concentration was converted in chlorophyll concentration, and compared with the experimental profiles measured in a site of the Tyrrhenian Sea at four different times (seasons) of the year, during four different oceanographic cruises. As a result we find a good agreement between theoretical and experimental distributions of chlorophyll concentration. In particular, theoretical results reveal that the seasonal changes of environmental variables play a key role in the phytoplankton distribution and determine the properties of the deep chlorophyll maximum. This study could be extended to other marine ecosystems to predict future changes in the phytoplankton biomass due to global warming, in view of devising strategies to prevent the decline of the primary production and the consequent decrease of fish species. PMID:25629963

Long-term Trend of Satellite-observed Chlorophyll-a Concentration Variations in the East/Japan Sea

NASA Astrophysics Data System (ADS)

Park, J. E.; PARK, K. A.

2016-02-01

Long-term time-series of satellite ocean color data enable us to analyze the effects of climate change on ocean ecosystem through chlorophyll-a concentration as a proxy for phytoplankton biomass. In this study, we constructed a 17 year-long time-series dataset (1998-2014) of chlorophyll-a concentration by combining SeaWiFS (Obrview-2, 1997-2010) and MODIS (Aqua, 2002-present) data in the East Sea (Japan Sea). Several types of errors such as anonymously high values (a speckle error), stripe-like patterns, discrepancy originating from time gap between the two satellites were eliminated to enhance the accuracy of chlorophyll-a concentration data. The composited chlorophyll-a concentration maps, passing through the post-processing of the speckle errors, were improved significantly, by 14% of abnormal variability in maximum. Using the database, we investigated spatial and temporal variability of chlorophyll-a concentration in the East Sea. Spatial distribution of long-term trend of chlorophyll-a concentration indicated obvious distinction between northern and southern regions of the subpolar front. It revealed predominant seasonal variabilities as well as long-term changes in the timings of spring bloom. This study addresses the important role of local climate change on fast changing ecosystem of the East Sea as one of miniature oceans.

Physical forcing of late summer chlorophyll a blooms in the oligotrophic eastern North Pacific

NASA Astrophysics Data System (ADS)

Toyoda, Takahiro; Okamoto, Suguru

2017-03-01

We investigated physical forcing of late summer chlorophyll a (chl a) blooms in the oligotrophic eastern North Pacific Ocean by using ocean reanalysis and satellite data. Relatively large chl a blooms as defined in this study occurred in August-October following sea surface temperature (SST) anomaly (SSTA) decreases, mixed layer deepening, and temperature and salinity increases at the bottom of the mixed layer. These physical conditions were apparently induced by the entrainment of subsurface water resulting from the destabilization of the surface layer caused by anomalous northward Ekman transport of subtropical waters of higher salinity. Salinity-normalized total alkalinity data provide supporting evidence for nutrient supply by the entrainment process. We next investigated the impact of including information about the entrainment on bloom identification. The results of analyses using reanalysis data and of those using only satellite data showed large SSTA decreases when the northward Ekman salinity transports were large, implying that the entrainment of subsurface water is well represented in both types of data. After surface-destabilizing conditions were established, relatively high surface chl a concentrations were observed. The use of SST information can further improve the detection of high chl a concentrations. Although the detection of high chl a concentrations would be enhanced by finer data resolution and the inclusion of biogeochemical parameters in the ocean reanalysis, our results obtained by using existing reanalysis data as well as recent satellite data are valuable for better understanding and prediction of lower trophic ecosystem variability.

Ocean subsurface particulate backscatter estimation from CALIPSO spaceborne lidar measurements

NASA Astrophysics Data System (ADS)

Chen, Peng; Pan, Delu; Wang, Tianyu; Mao, Zhihua

2017-10-01

A method for ocean subsurface particulate backscatter estimation from the Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) on the Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observation (CALIPSO) satellite was demonstrated. The effects of the CALIOP receiver's transient response on the attenuated backscatter profile were first removed. The two-way transmittance of the overlying atmosphere was then estimated as the ratio of the measured ocean surface attenuated backscatter to the theoretical value computed from wind driven wave slope variance. Finally, particulate backscatter was estimated from the depolarization ratio as the ratio of the column-integrated cross-polarized and co-polarized channels. Statistical results show that the derived particulate backscatter by the method based on CALIOP data agree reasonably well with chlorophyll-a concentration using MODIS data. It indicates a potential use of space-borne lidar to estimate global primary productivity and particulate carbon stock.

Algicidal and denitrification characterization of Acinetobacter sp. J25 against Microcystis aeruginosa and microbial community in eutrophic landscape water.

PubMed

Su, Jun Feng; Ma, Min; Wei, Li; Ma, Fang; Lu, Jin Suo; Shao, Si Cheng

2016-06-15

Acinetobacter sp. J25 exhibited good denitrification and high algicidal activity against toxic Microcystis aeruginosa. Response surface methodology (RSM) experiments showed that the maximum algicidal ratio occurred under the following conditions: temperature, 30.46°C; M. aeruginosa density, 960,000cellsmL(-1); and inoculum, 23.75% (v/v). Of these, inoculum produced the maximum effect. In the eutrophic landscape water experiment, 10% bacterial culture was infected with M. aeruginosa cells in the landscape water. After 24days, the removal ratios of nitrate and chlorophyll-a were high, 100% and 87.86%, respectively. The denitrification rate was approximately 0.118mgNO3(-)-N·L(-1)·h(-1). Moreover, the high-throughput sequencing result showed that Acinetobacter sp. J25 was obviously beneficial for chlorophyll-a and nitrate removal performance in the eutrophic landscape water treatment. Therefore, strain J25 is promising for the simultaneous removal of chlorophyll-a and nitrate in the eutrophic landscape water treatment. Copyright © 2016 Elsevier Ltd. All rights reserved.

Subsurface damage distribution in the lapping process.

PubMed

Wang, Zhuo; Wu, Yulie; Dai, Yifan; Li, Shengyi

2008-04-01

To systematically investigate the influence of lapping parameters on subsurface damage (SSD) depth and characterize the damage feature comprehensively, maximum depth and distribution of SSD generated in the optical lapping process were measured with the magnetorheological finishing wedge technique. Then, an interaction of adjacent indentations was applied to interpret the generation of maximum depth of SSD. Eventually, the lapping procedure based on the influence of lapping parameters on the material removal rate and SSD depth was proposed to improve the lapping efficiency.

Synthesis of integrated primary production in the Arctic Ocean: II. In situ and remotely sensed estimates

NASA Astrophysics Data System (ADS)

Hill, Victoria J.; Matrai, Patricia A.; Olson, Elise; Suttles, S.; Steele, Mike; Codispoti, L. A.; Zimmerman, Richard C.

2013-03-01

Recent warming of surface waters, accompanied by reduced ice thickness and extent may have significant consequences for climate-driven changes of primary production (PP) in the Arctic Ocean (AO). However, it has been difficult to obtain a robust benchmark estimate of pan-Arctic PP necessary for evaluating change. This paper provides an estimate of pan-Arctic PP prior to significant warming from a synthetic analysis of the ARCSS-PP database of in situ measurements collected from 1954 to 2007 and estimates derived from satellite-based observations from 1998 to 2007. Vertical profiles of in situ chlorophyll a (Chl a) and PP revealed persistent subsurface peaks in biomass and PP throughout the AO during most of the summer period. This was contradictory with the commonly assumed exponential decrease in PP with depth on which prior satellite-derived estimates were based. As remotely sensed Chl a was not a good predictor of integrated water column Chl a, accurate satellite-based modeling of vertically integrated primary production (IPPsat), requires knowledge of the subsurface distribution of phytoplankton, coincident with the remotely sensed ocean color measurements. We developed an alternative approach to modeling PP from satellite observations by incorporating climatological information on the depths of the euphotic zone and the mixed layer that control the distribution of phytoplankton that significantly improved the fidelity of satellite derived PP to in situ observations. The annual IPP of the Arctic Ocean combining both in situ and satellite based estimates was calculated here to be a minimum of 466 ± 94 Tg C yr-1 and a maximum of 993 ± 94 Tg C yr-1, when corrected for subsurface production. Inflow shelf seas account for 75% of annual IPP, while the central basin and Beaufort northern sea were the regions with the lowest annual integrated productivity, due to persistently stratified, oligotrophic and ice-covered conditions. Although the expansion of summertime ice retreat should stimulate photosynthesis by exposing more of the AO to solar irradiance, total PP is ultimately limited by nutrient availability. Therefore, changes in AO PP will be forced by the balance between stratification and mixing, the effects of which are not yet quantified.

Novel type of red-shifted chlorophyll a antenna complex from Chromera velia: II. Biochemistry and spectroscopy.

PubMed

Bína, David; Gardian, Zdenko; Herbstová, Miroslava; Kotabová, Eva; Koník, Peter; Litvín, Radek; Prášil, Ondřej; Tichý, Josef; Vácha, František

2014-06-01

A novel chlorophyll a containing pigment-protein complex expressed by cells of Chromera velia adapted to growth under red/far-red illumination [1]. Purification of the complex was achieved by means of anion-exchange chromatography and gel-filtration. The antenna is shown to be an aggregate of ~20kDa proteins of the light-harvesting complex (LHC) family, unstable in the isolated form. The complex possesses an absorption maximum at 705nm at room temperature in addition to the main chlorophyll a maximum at 677nm producing the major emission band at 714nm at room temperature. The far-red absorption is shown to be the property of the isolated aggregate in the intact form and lost upon dissociation. The purified complex was further characterized by circular dichroism spectroscopy and fluorescence spectroscopy. This work thus identified the third different class of antenna complex in C. velia after the recently described FCP-like and LHCr-like antennas. Possible candidates for red antennas are identified in other taxonomic groups, such as eustigmatophytes and the relevance of the present results to other known examples of red-shifted antenna from other organisms is discussed. This work appears to be the first successful isolation of a chlorophyll a-based far-red antenna complex absorbing above 700nm unrelated to LHCI. Copyright © 2014 Elsevier B.V. All rights reserved.

Genetically engineered mutant of the cyanobacterium Synechocystis 6803 lacks the photosystem II chlorophyll-binding protein CP-47

PubMed Central

Vermaas, Wim F. J.; Williams, John G. K.; Rutherford, A. William; Mathis, Paul; Arntzen, Charles J.

1986-01-01

CP-47 is absent in a genetically engineered mutant of cyanobacterium Synechocystis 6803, in which the psbB gene [encoding the chlorophyll-binding photosystem II (PSII) protein CP-47] was interrupted. Another chlorophyll-binding PSII protein, CP-43, is present in the mutant, and functionally inactive PSII-enriched particles can be isolated from mutant thylakoids. We interpret these data as indicating that the PSII core complex of the mutant still assembles in the absence of CP-47. The mutant lacks a 77 K fluorescence emission maximum at 695 nm, suggesting that the PSII reaction center is not functional. The absence of primary photochemistry was indicated by EPR and optical measurements: no chlorophyll triplet originating from charge recombination between P680+ and Pheo- was observed in the mutant, and there were no flash-induced absorption changes at 820 nm attributable to chlorophyll P680 oxidation. These observations lead us to conclude that CP-47 plays an essential role in the activity of the PSII reaction center. Images PMID:16593788

Relationship between the Fluorescence Lifetime of Chlorophyll 'a' and Primary Productivity within the Mississippi River Plume and Adjacent Shelf Region

NASA Technical Reports Server (NTRS)

Hall, Callie; Miller, Richard L.; Fernandez, Salvador M.; McKee, Brent A.

2000-01-01

In situ measurements of chlorophyll fluorescence intensity have been widely used to estimate phytoplankton biomass. However, because the fluorescence quantum yield of chlorophyll a in vivo can be highly variable, measurements of chlorophyll fluorescence intensity cannot be directly correlated with phytoplankton biomass and do not provide information on the physiological state of the phytoplankton under study. Conversely, lifetime-based measurements of chlorophyll fluorescence provide a framework in which photosynthetic rates of phytoplankton can be analyzed according to phytoplankton physiology. Along with the measurement of primary production and ambient nutrient concentrations within the Mississippi River plume in the northern Gulf of Mexico, phytoplankton fluorescence lifetimes were measured using a Fluorescence Lifetime Phytoplankton Analyzer (developed under a NASA Small Business Innovative Research contract to Ciencia, Inc.). Variability of fluorescence lifetimes within the plume can be used as a background from which to interpret variations in the maximum quantum yield of photochemistry. The extent to which nutrient and effluent loading in this dynamic coastal area affect the photosynthetic performance of phytoplankton will be presented as a function of phytoplankton fluorescence lifetimes.

Surface and subsurface cracks characteristics of single crystal SiC wafer in surface machining

NASA Astrophysics Data System (ADS)

Qiusheng, Y.; Senkai, C.; Jisheng, P.

2015-03-01

Different machining processes were used in the single crystal SiC wafer machining. SEM was used to observe the surface morphology and a cross-sectional cleavages microscopy method was used for subsurface cracks detection. Surface and subsurface cracks characteristics of single crystal SiC wafer in abrasive machining were analysed. The results show that the surface and subsurface cracks system of single crystal SiC wafer in abrasive machining including radial crack, lateral crack and the median crack. In lapping process, material removal is dominated by brittle removal. Lots of chipping pits were found on the lapping surface. With the particle size becomes smaller, the surface roughness and subsurface crack depth decreases. When the particle size was changed to 1.5µm, the surface roughness Ra was reduced to 24.0nm and the maximum subsurface crack was 1.2µm. The efficiency of grinding is higher than lapping. Plastic removal can be achieved by changing the process parameters. Material removal was mostly in brittle fracture when grinding with 325# diamond wheel. Plow scratches and chipping pits were found on the ground surface. The surface roughness Ra was 17.7nm and maximum subsurface crack depth was 5.8 µm. When grinding with 8000# diamond wheel, the material removal was in plastic flow. Plastic scratches were found on the surface. A smooth surface of roughness Ra 2.5nm without any subsurface cracks was obtained. Atomic scale removal was possible in cluster magnetorheological finishing with diamond abrasive size of 0.5 µm. A super smooth surface eventually obtained with a roughness of Ra 0.4nm without any subsurface crack.

Is Europa's Subsurface Water Ocean Warm?

NASA Technical Reports Server (NTRS)

Melosh, H. J.; Ekholm, A. G.; Showman, A. P.; Lorenz, R. D.

2002-01-01

Europa's subsurface water ocean may be warm: that is, at the temperature of water's maximum density. This provides a natural explanation of chaos melt-through events and leads to a correct estimate of the age of its surface. Additional information is contained in the original extended abstract.

[Effects of different water potentials on leaf gas exchange and chlorophyll fluorescence parameters of cucumber during post-flowering growth stage].

PubMed

Lin, Lu; Tang, Yun; Zhang, Ji-tao; Yan, Wan-li; Xiao, Jian-hong; Ding, Chao; Dong, Chuan; Ji, Zeng-shun

2015-07-01

Impacts of different substrate water potentials (SWP) on leaf gas exchange and chlorophyll fluorescence parameters of greenhouse cucumber during its post-flowering growth stage were analyzed in this study. The results demonstrated that -10 and -30 kPa were the critical values for initiating stomatal and non-stomatal limitation of drought stress, respectively. During the stage of no drought stress (-10 kPa < SWP ≤ 0 kPa), gas exchange parameters and chlorophyll fluorescence parameters were not different significantly among treatments. During the stage of stomatal limitation of drought stress (-30 kPa

Beneficial role of spermidine in chlorophyll metabolism and D1 protein content in tomato seedlings under salinity-alkalinity stress.

PubMed

Hu, Lipan; Xiang, Lixia; Li, Shuting; Zou, Zhirong; Hu, Xiao-Hui

2016-04-01

Polyamines are important in protecting plants against various environmental stresses, including protection against photodamage to the photosynthetic apparatus. The molecular mechanism of this latter effect is not completely understood. Here, we have investigated the effects of salinity-alkalinity stress and spermidine (Spd) on tomato seedlings at both physiological and transcriptional levels. Salinity-alkalinity stress decreased leaf area, net photosynthetic rate, maximum net photosynthetic rate, light saturation point, apparent quantum efficiency, total chlorophyll, chlorophyll a and chlorophyll a:chlorophyll b relative to the control. The amount of D1 protein, an important component of photosystem II, was reduced compared with the control, as was the expression of psbA, which codes for D1. Expression of the chlorophyll biosynthesis gene porphobilinogen deaminase (PBGD) was reduced following salinity-alkalinity stress, whereas the expression of Chlase, which codes for chlorophyllase, was increased. These negative physiological effects of salinity-alkalinity stress were alleviated by exogenous Spd. Expression of PBGD and psbA were enhanced, whereas the expression of Chlase was reduced, when exogenous Spd was included in the stress treatment compared with when it was not. The protective effect of Spd on chlorophyll and D1 protein content during stress may maintain the photosynthetic apparatus, permitting continued photosynthesis and growth of tomato seedlings (Solanum lycopersicum cv. Jinpengchaoguan) under salinity-alkalinity stress. © 2015 Scandinavian Plant Physiology Society.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qiusheng, Y., E-mail: qsyan@gdut.edu.cn; Senkai, C., E-mail: senkite@sina.com; Jisheng, P., E-mail: panjisheng@gdut.edu.cn

Different machining processes were used in the single crystal SiC wafer machining. SEM was used to observe the surface morphology and a cross-sectional cleavages microscopy method was used for subsurface cracks detection. Surface and subsurface cracks characteristics of single crystal SiC wafer in abrasive machining were analysed. The results show that the surface and subsurface cracks system of single crystal SiC wafer in abrasive machining including radial crack, lateral crack and the median crack. In lapping process, material removal is dominated by brittle removal. Lots of chipping pits were found on the lapping surface. With the particle size becomes smaller,more » the surface roughness and subsurface crack depth decreases. When the particle size was changed to 1.5µm, the surface roughness Ra was reduced to 24.0nm and the maximum subsurface crack was 1.2µm. The efficiency of grinding is higher than lapping. Plastic removal can be achieved by changing the process parameters. Material removal was mostly in brittle fracture when grinding with 325# diamond wheel. Plow scratches and chipping pits were found on the ground surface. The surface roughness Ra was 17.7nm and maximum subsurface crack depth was 5.8 µm. When grinding with 8000# diamond wheel, the material removal was in plastic flow. Plastic scratches were found on the surface. A smooth surface of roughness Ra 2.5nm without any subsurface cracks was obtained. Atomic scale removal was possible in cluster magnetorheological finishing with diamond abrasive size of 0.5 µm. A super smooth surface eventually obtained with a roughness of Ra 0.4nm without any subsurface crack.« less

Phase 2 development of Great Lakes algorithms for Nimbus-7 coastal zone color scanner

NASA Technical Reports Server (NTRS)

Tanis, Fred J.

1984-01-01

A series of experiments have been conducted in the Great Lakes designed to evaluate the application of the NIMBUS-7 Coastal Zone Color Scanner (CZCS). Atmospheric and water optical models were used to relate surface and subsurface measurements to satellite measured radiances. Absorption and scattering measurements were reduced to obtain a preliminary optical model for the Great Lakes. Algorithms were developed for geometric correction, correction for Rayleigh and aerosol path radiance, and prediction of chlorophyll-a pigment and suspended mineral concentrations. The atmospheric algorithm developed compared favorably with existing algorithms and was the only algorithm found to adequately predict the radiance variations in the 670 nm band. The atmospheric correction algorithm developed was designed to extract needed algorithm parameters from the CZCS radiance values. The Gordon/NOAA ocean algorithms could not be demonstrated to work for Great Lakes waters. Predicted values of chlorophyll-a concentration compared favorably with expected and measured data for several areas of the Great Lakes.

Effect of crude oil contamination on the chlorophyll content and morpho-anatomy of Cyperus brevifolius (Rottb.) Hassk.

PubMed

Baruah, Plabita; Saikia, Rashmi Rekha; Baruah, Partha Pratim; Deka, Suresh

2014-11-01

Chlorophyll plays a pivotal role in the plant physiology and its productivity. Cultivation of plants in crude oil contaminated soil has a great impact on the synthesis of chlorophyll pigment. Morpho-anatomy of the experimental plant also shows structural deformation in higher concentrations. Keeping this in mind, a laboratory investigation has been carried out to study the effect of crude oil on chlorophyll content and morpho-anatomy of Cyperus brevifolius plant. Fifteen-day-old seedling of the plant was planted in different concentrations of the crude oil mixed soil (i.e., 10,000, 20,000, 30,000, 40,000, and 50,000 ppm). A control setup was also maintained without adding crude oil. Results were recorded after 6 months of plantation. Investigation revealed that there is a great impact of crude oil contamination on chlorophyll content of the leaves of the experimental plant. It also showed that chlorophyll a, chlorophyll b, and total chlorophyll content of leaves grown in different concentrations of crude oil were found to be lower than those of the control plant. Further, results also demonstrated that chlorophyll content was lowest in the treatment that received maximum dose of crude oil. It also showed that chlorophyll content was decreased with increased concentration of crude oil. Results also demonstrated that there was a reduction in plant shoot and root biomass with the increase of crude oil concentration. Results also revealed that the shoot biomass is higher than root biomass. Morphology and anatomy of the experimental plant also show structural deformation in higher concentrations. Accumulation of crude oil on the cuticle of the transverse section of the leaves and shoot forms a thick dark layer. Estimation of the level of pollution in an environment due to oil spill is possible by the in-depth study of the harmful effects of oil on the morphology and anatomy and chlorophyll content of the plants grown in that particular environment.

Chlorophyll a reconstruction from in situ measurements: 2. Marked carbon uptake decrease in the last century

NASA Astrophysics Data System (ADS)

Fründt, B.; Dippner, J. W.; Schulz-Bull, D. E.; Waniek, J. J.

2015-02-01

A chlorophyll a hindcast in the Madeira Basin from 1871 to 2008 was used to analyze the long-term variability in the oligotrophic, subtropical gyres in relation to the climate change of the last century. The deep chlorophyll maximum (DCM), as dominant pattern of the chlorophyll a field, showed a fast decrease in its strength in the 1940s. An absolute minimum was reached between 1967 and 1973 when no DCM established with a recovering to the end of the time series. Long-term variability of the DCM was related to the North Atlantic Oscillation with a time delay of 9 years. The marked decrease in the 1940s was correlated to the drop of the solar radiation in transition from early brightening to global dimming. Caused by the influence of the solar radiation and maybe related to increasing global temperatures in the last century, the integrated chlorophyll a concentration decreased by about 0.7 mg m-2 in 2008 compared to 1871. The high-resolved chlorophyll a hindcast allowed an estimation of the carbon uptake by the ocean due to primary production in the euphotic zone. A rough calculation over the area of the global subtropical oceans showed 700 megaton less carbon uptake in 2008.

Spatial and Temporal Patterns of Chlorophyll Concentration in the Southern California Bight

NASA Astrophysics Data System (ADS)

Nezlin, Nikolay P.; McLaughlin, Karen; Booth, J. Ashley T.; Cash, Curtis L.; Diehl, Dario W.; Davis, Kristen A.; Feit, Adriano; Goericke, Ralf; Gully, Joseph R.; Howard, Meredith D. A.; Johnson, Scott; Latker, Ami; Mengel, Michael J.; Robertson, George L.; Steele, Alex; Terriquez, Laura; Washburn, Libe; Weisberg, Stephen B.

2018-01-01

Distinguishing between local, anthropogenic nutrient inputs and large-scale climatic forcing as drivers of coastal phytoplankton biomass is critical to developing effective nutrient management strategies. Here we assess the relative importance of these two drivers by comparing trends in chlorophyll-a between shallow coastal (0.1-16.5 km) and deep offshore (17-700 km) areas, hypothesizing that coastal regions influenced by anthropogenic nutrient inputs may have different spatial and temporal patterns in chlorophyll-a concentration from offshore regions where coastal inputs are less influential. Quarterly conductivity-temperature-depth (CTD) fluorescence measurements collected from three southern California continental shelf regions since 1998 were compared to chlorophyll-a data from the more offshore California Cooperative Fisheries Investigations (CalCOFI) program. The trends in the coastal zone were similar to those offshore, with a gradual increase of chlorophyll-a biomass and shallowing of its maximum layer since the beginning of observations, followed by chlorophyll-a declining and deepening from 2010 to present. An exception was the northern coastal part of SCB, where chlorophyll-a continued increasing after 2010. The long-term increase in chlorophyll-a prior to 2010 was correlated with increased nitrate concentrations in deep waters, while the recent decline was associated with deepening of the upper mixed layer, both linked to the low-frequency climatic cycles of the Pacific Decadal Oscillation and North Pacific Gyre Oscillation. These large-scale factors affecting the physical structure of the water column may also influence the delivery of nutrients from deep ocean outfalls to the euphotic zone, making it difficult to distinguish the effects of anthropogenic inputs on chlorophyll along the coast.

Quantification of Plant Chlorophyll Content Using Google Glass

PubMed Central

Cortazar, Bingen; Koydemir, Hatice Ceylan; Tseng, Derek; Feng, Steve; Ozcan, Aydogan

2015-01-01

Measuring plant chlorophyll concentration is a well-known and commonly used method in agriculture and environmental applications for monitoring plant health, which also correlates with many other plant parameters including, e.g., carotenoids, nitrogen, maximum green fluorescence, etc. Direct chlorophyll measurement using chemical extraction is destructive, complex and time-consuming, which has led to the development of mobile optical readers, providing non-destructive but at the same time relatively expensive tools for evaluation of plant chlorophyll levels. Here we demonstrate accurate measurement of chlorophyll concentration in plant leaves using Google Glass and a custom-developed software application together with a cost-effective leaf holder and multi-spectral illuminator device. Two images, taken using Google Glass, of a leaf placed in our portable illuminator device under red and white (i.e., broadband) light-emitting-diode (LED) illumination are uploaded to our servers for remote digital processing and chlorophyll quantification, with results returned to the user in less than 10 seconds. Intensity measurements extracted from the uploaded images are mapped against gold-standard colorimetric measurements made through a commercially available reader to generate calibration curves for plant leaf chlorophyll concentration. Using five plant species to calibrate our system, we demonstrate that our approach can accurately and rapidly estimate chlorophyll concentration of fifteen different plant species under both indoor and outdoor lighting conditions. This Google Glass based chlorophyll measurement platform can display the results in spatiotemporal and tabular forms and would be highly useful for monitoring of plant health in environmental and agriculture related applications, including e.g., urban plant monitoring, indirect measurements of the effects of climate change, and as an early indicator for water, soil, and air quality degradation. PMID:25669673

Quantification of plant chlorophyll content using Google Glass.

PubMed

Cortazar, Bingen; Koydemir, Hatice Ceylan; Tseng, Derek; Feng, Steve; Ozcan, Aydogan

2015-04-07

Measuring plant chlorophyll concentration is a well-known and commonly used method in agriculture and environmental applications for monitoring plant health, which also correlates with many other plant parameters including, e.g., carotenoids, nitrogen, maximum green fluorescence, etc. Direct chlorophyll measurement using chemical extraction is destructive, complex and time-consuming, which has led to the development of mobile optical readers, providing non-destructive but at the same time relatively expensive tools for evaluation of plant chlorophyll levels. Here we demonstrate accurate measurement of chlorophyll concentration in plant leaves using Google Glass and a custom-developed software application together with a cost-effective leaf holder and multi-spectral illuminator device. Two images, taken using Google Glass, of a leaf placed in our portable illuminator device under red and white (i.e., broadband) light-emitting-diode (LED) illumination are uploaded to our servers for remote digital processing and chlorophyll quantification, with results returned to the user in less than 10 seconds. Intensity measurements extracted from the uploaded images are mapped against gold-standard colorimetric measurements made through a commercially available reader to generate calibration curves for plant leaf chlorophyll concentration. Using five plant species to calibrate our system, we demonstrate that our approach can accurately and rapidly estimate chlorophyll concentration of fifteen different plant species under both indoor and outdoor lighting conditions. This Google Glass based chlorophyll measurement platform can display the results in spatiotemporal and tabular forms and would be highly useful for monitoring of plant health in environmental and agriculture related applications, including e.g., urban plant monitoring, indirect measurements of the effects of climate change, and as an early indicator for water, soil, and air quality degradation.

Profiling USGA putting greens using GPR

USDA-ARS?s Scientific Manuscript database

All USGA-specification putting greens require a subsurface drainage system. A typical subsurface installation is a herringbone pattern of buried 100-mm dia. PVC drainage pipes, designed such that the central main line is placed along the line of maximum slope. Laterals are spaced no more than 5 m, r...

Trophic structure and microbial activity in a spawning area of Engraulis encrasicolus

NASA Astrophysics Data System (ADS)

Zaccone, R.; Azzaro, M.; Azzaro, F.; Caruso, G.; Caroppo, C.; Decembrini, F.; Diociaiuti, T.; Fonda Umani, S.; Leonardi, M.; Maimone, G.; Monticelli, L. S.; Paranhos, R.; Placenti, F.; Cuttitta, A.; Patti, B.; La Ferla, R.

2018-07-01

The abundance, biomass and size-structure of planktonic populations, and the microbial metabolic processes were studied in the Sicily Channel, one of the most important spawning areas in the Mediterranean for anchovy (Engraulis encrasicolus), a pelagic species of commercial interest. Results showed that prokaryotes contribute for the 83% of total carbon biomass. Microphytoplankton abundances and biomasses were dominated by autotrophic nanoflagellates and dinoflagellates (36 identified species) and contribute 11% of total biomass. The microzooplanktonic biomass showed its maximum at the surface or subsurface and its contribution was low (4%). In agreement with the general oligotrophy of the investigated area, the study highlights the prevalence of pico-sized fractions within the whole phytoplankton biomass expressed as chlorophyll content, suggesting the importance of picophytoplankton in sustaining the microbial food web. At the same time, the levels of microbial hydrolytic activities are related to productive processes recycling the organic matter and releasing nutrients (P and N), indicating also an active functioning of ecosystem at low trophic levels. Autotrophic production exceeded oxidation by respiration; at the same time, the co-variation of prokaryotic activities and eggs distribution with temperature in summer was observed. The results obtained confirmed that the area acted as a nursery for small fish and both autotrophic and heterotrophic processes supported by microorganisms were in synergy.

Exploring the Relationship Between Reflectance Red Edge and Chlorophyll Content in Slash Pine

NASA Technical Reports Server (NTRS)

Curran, Paul J.; Dungan, Jennifer L.; Gholz, Henry L.

1990-01-01

Chlorophyll is a key indicator of the physiological status of a forest canopy. However, its distribution may vary greatly in time and space, so that the estimation of chlorophyll content of canopies or branches by extrapolation from leaf values obtained by destructive sampling is labor intensive and potentially inaccurate. Chlorophy11 content is related positively to the point of maximum slope in vegetation reflectance spectra which occurs at wavelengths between 690-740 nm and is known as the "red edge." The red edge of needles on individual slash pine (Piniis elliottii Engelm.) branches and in whole forest canopies was measured with a spectroradiometer. Branches were measured on the ground against a spectrally flat reflectance target and canopies were measured from observation towers against a spectrally variable understory and forest floor. There was a linear relationship between red edge and chlorophyll content of branches (R(exp 2) = 0.91). Measurements of the red edge and this relationship were used to estimate the chlorophyll content of other branches with an error that was lower than that associated with the colorimetric (laboratory) method. There was no relationship between the red edge and the chlorophyll content of whole canopies. This can be explained by the overriding influence of the understory and forest floor, an influence that was illustrated by spectral mixture modeling. The results suggest that the red edge could be used to estimate the chlorophyll content in branches but it is unlikely to be of value for the estimation of chlorophyll content in canopies unless the canopy cover is high.

Pigments, size and distribution of Synechococcus spp. in the Black Sea

NASA Astrophysics Data System (ADS)

Uysal, Zahit

2000-03-01

Pigments, size and distribution of Phycoerythrin-containing unicellular cyanobacteria Synechococcus spp. within the euphotic zone were studied for the first time in April-May 1994 in the western and southwestern Black Sea by epifluorescence microscopy and flow-cytometry. Synechococcus was present in varying quantities at every station and depth studied. Surface spatial distribution of Synechococcus revealed that cells were much more abundant in offshore waters than near coastal regions under the direct influence of the Danube river. Minimum and maximum cell concentrations ranged between 9×10 2 and 1.45×10 5 cells/ml at the surface, between 2×10 3 and 1.23×10 5 cells/ml at the chlorophyll sub-maximum layer, and between 1.3×10 2 and 3.5×10 2 at the nitrite maximum layer. Cells at the chlorophyll sub-maximum layer (based on in-situ fluorometer readings) fluoresce brighter and longer than the ones at the surface and lower depths. Spectral properties of chromophore pigment types of total 64 clonal isolates from different depths down to the lower layer of the euphotic zone (˜60 m) in the southern Black Sea coast revealed that all have type 2 phycoerythrobilin in common, lacking in phycourobilin. In vivo fluorescence emission maxima for the phycoerythrobilin were about the same (˜578 nm) for all isolates. All isolates examined showed in vivo absorption maxima at between 435 and 442 nm and at about 681 nm due to chlorophyll- a. Based on the flow cytometer mean forward light scatter data for size distribution, it could be concluded that cells at the surface mixed layer (0-10 m) were larger in cell size than the cells at lower depths (20-60 m).

Physical Forcing Mechanisms Controlling the Variability of Chlorophyll-a over the Royal-Charlotte and Abrolhos Banks—Eastern Brazilian Shelf

PubMed Central

Ghisolfi, Renato David; Pereira da Silva, Meyre; Thomaz dos Santos, Felipe; Servino, Ricardo Nogueira; Cirano, Mauro; Thompson, Fabiano Lopes

2015-01-01

The Abrolhos Bank is part of the so-called Eastern Brazilian Shelf and is an area of high ecological and economic importance. The bank supports the largest and richest coral reefs in the South Atlantic and the largest rhodolith bed in the world. The spatial and seasonal variation of phytoplankton concentration, however, and the dynamic processes controlling that variability have remained poorly known. The present study investigates the seasonal and spatial distributions of chlorophyll-a (Chl-a) and water conditions by analyzing nine years (2003–2011) of level-3 Moderate-resolution Imaging Spectroradiometer (MODIS) derived Chl-a, National Centers for Environmental Prediction (NCEP)/ETA model-derived winds, NCEP model-derived heat fluxes, thermohaline and velocity results from the Hybrid Circulation Ocean Model (HYCOM) 1/12o assimilated simulation. The results show that low/high concentrations occurred in austral spring-summer (wet season)/autumn-winter (dry season), with the highest values observed in the northern portion of the Abrolhos Bank. The typical meteorological and oceanographic conditions during austral summer favor the development of strong stratification. These conditions are 1) N-NE winds that favor an upwelling-type Ekman circulation; 2) coupling between the open ocean and the continental shelf through the western boundary current, which promotes cooler subsurface water to rise onto the shelf break; and 3) positive net heat flux. In contrast, the S-SE winds during autumn are in the opposite direction of the predominant current system over the Abrolhos Bank, thus reducing their speed and inducing an inverse shear. The warmer ocean and a somewhat cool and dry atmosphere promote the evaporative cooling of the surface layer. The above processes drive mixed layer cooling and deepening that reaches its maximum in winter. The blooming of phytoplankton in the Abrolhos Bank waters appears to be regulated by changes in the mixed layer depth, with Chl-a levels that start to increase during autumn and reach their peak in June-July. PMID:25700269

Physical forcing mechanisms controlling the variability of chlorophyll-a over the Royal-Charlotte and Abrolhos Banks-Eastern Brazilian Shelf.

PubMed

Ghisolfi, Renato David; Pereira da Silva, Meyre; Thomaz dos Santos, Felipe; Servino, Ricardo Nogueira; Cirano, Mauro; Thompson, Fabiano Lopes

2015-01-01

The Abrolhos Bank is part of the so-called Eastern Brazilian Shelf and is an area of high ecological and economic importance. The bank supports the largest and richest coral reefs in the South Atlantic and the largest rhodolith bed in the world. The spatial and seasonal variation of phytoplankton concentration, however, and the dynamic processes controlling that variability have remained poorly known. The present study investigates the seasonal and spatial distributions of chlorophyll-a (Chl-a) and water conditions by analyzing nine years (2003-2011) of level-3 Moderate-resolution Imaging Spectroradiometer (MODIS) derived Chl-a, National Centers for Environmental Prediction (NCEP)/ETA model-derived winds, NCEP model-derived heat fluxes, thermohaline and velocity results from the Hybrid Circulation Ocean Model (HYCOM) 1/12o assimilated simulation. The results show that low/high concentrations occurred in austral spring-summer (wet season)/autumn-winter (dry season), with the highest values observed in the northern portion of the Abrolhos Bank. The typical meteorological and oceanographic conditions during austral summer favor the development of strong stratification. These conditions are 1) N-NE winds that favor an upwelling-type Ekman circulation; 2) coupling between the open ocean and the continental shelf through the western boundary current, which promotes cooler subsurface water to rise onto the shelf break; and 3) positive net heat flux. In contrast, the S-SE winds during autumn are in the opposite direction of the predominant current system over the Abrolhos Bank, thus reducing their speed and inducing an inverse shear. The warmer ocean and a somewhat cool and dry atmosphere promote the evaporative cooling of the surface layer. The above processes drive mixed layer cooling and deepening that reaches its maximum in winter. The blooming of phytoplankton in the Abrolhos Bank waters appears to be regulated by changes in the mixed layer depth, with Chl-a levels that start to increase during autumn and reach their peak in June-July.

Quantifying the biological impact of surface ocean light attenuation by colored detrital matter in an ESM using a new optical parameterization

NASA Astrophysics Data System (ADS)

Kim, G. E.; Pradal, M.-A.; Gnanadesikan, A.

2015-08-01

Light attenuation by colored detrital material (CDM) was included in a fully coupled Earth system model (ESM). This study presents a modified parameterization for shortwave attenuation, which is an empirical relationship between 244 concurrent measurements of the diffuse attenuation coefficient for downwelling irradiance, chlorophyll concentration and light absorption by CDM. Two ESM model runs using this parameterization were conducted, with and without light absorption by CDM. The light absorption coefficient for CDM was prescribed as the average of annual composite MODIS Aqua satellite data from 2002 to 2013. Comparing results from the two model runs shows that changes in light limitation associated with the inclusion of CDM decoupled trends between surface biomass and nutrients. Increases in surface biomass were expected to accompany greater nutrient uptake and therefore diminish surface nutrients. Instead, surface chlorophyll, biomass and nutrients increased together. These changes can be attributed to the different impact of light limitation on surface productivity versus total productivity. Chlorophyll and biomass increased near the surface but decreased at greater depths when CDM was included. The net effect over the euphotic zone was less total biomass leading to higher nutrient concentrations. Similar results were found in a regional analysis of the oceans by biome, investigating the spatial variability of response to changes in light limitation using a single parameterization for the surface ocean. In coastal regions, surface chlorophyll increased by 35 % while total integrated phytoplankton biomass diminished by 18 %. The largest relative increases in modeled surface chlorophyll and biomass in the open ocean were found in the equatorial biomes, while the largest decreases in depth-integrated biomass and chlorophyll were found in the subpolar and polar biomes. This mismatch of surface and subsurface trends and their regional dependence was analyzed by comparing the competing factors of diminished light availability and increased nutrient availability on phytoplankton growth in the upper 200 m. Understanding changes in biological productivity requires both surface and depth-resolved information. Surface trends may be minimal or of the opposite sign than depth-integrated amounts, depending on the vertical structure of phytoplankton abundance.

Environmental studies of the Arabian Sea using remote sensing and GIS

NASA Astrophysics Data System (ADS)

Saxena, Ashlesha; Menezes, Andrew

2006-12-01

The Arabian Sea, situated in the western part of the northern Indian Ocean is a tropical basin. It is bounded on the east by the Indian peninsula, on the north by Baluchistan and Sindh provinces of Pakistan and on the west by the landmass of Arabia and Africa. The environmental factors that influence this tropical basin are the seasonally changing winds from the northeast during winter (November-February) and southwest during summer (June to September). Accordingly, the waters of the basin will experience seasonal variations. The study aims at understanding the seasonal and inter-annual variation of the Arabian Sea using satellite-derived data. The spatial domain selected for the present study is 40 degrees E and 78 degrees E longitude and equator to 30 degrees N. The remote sensing data with respect to sea surface temperature (SST), sea surface wind, sea surface height (SSH), and chlorophyll pigment concentration during January 2002 to December 2005 were used to understand the spatio-temporal variability of the Arabian Sea. The monthly mean SST data was obtained from Modis aqua, winds from Quikscat and chlorophyll pigment concentration from SeaWiFS. The SSH anomaly data was obtained from the merged product - Topex/Poseidon ERS 1/2 satellite which is 7-day snapshot. The spatial resolution of these data is 0.3 degrees latitude x 0.3 degrees longitude. Geographical information system (GIS) was used for processing and analysing the above parameters to determine the variability and detection of oceanic processes that are responsible for such variability.The study showed a very strong inverse correlation between SST and chlorophyll concentrations. Arabian Sea undergoes cooling during summer due to upwelling and advection, and in winter due to surface cooling under reduced solar heating. Upwelling along the coasts of Somalia, Arabia, and the west coast of India brings cold and nutrient rich sub-surface waters to the surface, which supports the observed high chlorophyll concentrations. During winter the convective mixing in the northern Arabian Sea supports high chlorophyll pigment concentrations. Due to strong solar heating, SST was warmest in spring (April), which supported least chlorophyll concentration.llite

Change in Photosystem II Photochemistry During Algal Growth Phases of Chlorella vulgaris and Scenedesmus obliquus.

PubMed

Oukarroum, Abdallah

2016-06-01

Sensitivity of photosynthetic processes towards environmental stress is used as a bioanalytical tool to evaluate the responses of aquatic plants to a changing environment. In this paper, change of biomass density, chlorophyll a fluorescence and photosynthetic parameters during growth phases of two microalgae Chlorella vulgaris and Scenedesmus obliquus were studied. The photosynthetic growth behaviour changed significantly with cell age and algae species. During the exponential phase of growth, the photosynthesis capacity reached its maximum and decreased in ageing algal culture during stationary phase. In conclusion, the chlorophyll a fluorescence OJIP method and the derived fluorescence parameters would be an accurate method for obtaining information on maximum photosynthetic capacities and monitoring algal cell growth. This will contribute to more understanding, for example, of toxic actions of pollutants in microalgae test.

Water Raman normalization of airborne laser fluorosensor measurements - A computer model study

NASA Technical Reports Server (NTRS)

Poole, L. R.; Esaias, W. E.

1982-01-01

The technique for normalizing airborne lidar measurements of chlorophyll fluoresence by the water Raman scattering signal is investigated for laser-excitation wavelengths of 480 and 532 nm using a semianalytic Monte Carlo methodology (SALMON). The signal-integration depth for chlorophyll fluorescence Z(90,F), is found to be insensitive to excitation wavelength and ranges from a maximum of 4.5 m in clearest waters to less than 1 m at a chlorophyll concentration of 20 microgram/liter. For excitation at 532 nm, the signal-integration depth for Raman scattering, Z(90,R), is comparable to Z(90,F). For excitation at 480 nm, Z(90,R) is four times as large as Z(90,F) in clearest waters but nearly equivalent at chlorophyll concentrations greater than 2-3 microgram/liter. Absolute signal levels are stronger with excitation at 480 nm than with excitation at 532 nm, but this advantage must be weighed against potential ambiguities resulting from different integration depths for the fluorescence and Raman scattering signals in clearer waters. To the precision of the simulations, Raman normalization produces effectively linear response to chlorophyll concentration for both excitation wavelengths.

Estimating Surface and Subsurface Ice Abundance on Mercury Using a Thermophysical Model

NASA Astrophysics Data System (ADS)

Rubanenko, L.; Mazarico, E.; Neumann, G. A.; Paige, D. A.

2016-12-01

The small obliquity of the Moon and Mercury causes some topographic features near their poles to cast permanent shadows for geologic time periods. In the past, these permanently shadowed regions (PSRs) were found to have low enough temperatures to trap surface and subsurface water ice. On Mercury, high normal albedo is correlated with maximum temperatures <100 m and high radar backscatter, possibly indicating the presence of surface ice. Areas with slightly higher maximum temperatures were measured to have a decreased albedo, postulated to contain of organic materials overlaying buried ice. We evaluate this theory by employing a thermophysical model that considers insolation, scattering, thermal emissions and subsurface conduction. We model the area fraction of surface and subsurface cold-traps on realistic topography at scales of ˜500 m , recorded by the Mercury Laster Altimeter (MLA) on board the MErcury Surface, Space ENviroment, GEochemistry and Ranging (MESSENGER) spacecraft. At smaller scales, below the instrument threshold, we consider a statistical description of the surface assuming a Gaussian slope distribution. Using the modeled cold-trap area fraction we calculate the expected surface albedo and compare it to MESSENGER's near-infrared surface reflectance data. Last, we apply our model to other airless small-obliquity planetary bodies such as the Moon and Ceres in order to explain other correlations between the maximum temperature and normal albedo.

A long-term monitoring study of chlorophyll, microbial contaminants, and pesticides in a coastal residential stormwater pond and its adjacent tidal creek.

PubMed

DeLorenzo, Marie E; Thompson, Brian; Cooper, Emily; Moore, Janet; Fulton, Michael H

2012-01-01

Stormwater ponds are commonly used in residential and commercial areas to control flooding. The accumulation of urban contaminants in stormwater ponds can lead to water-quality problems including nutrient enrichment, chemical contamination, and bacterial contamination. This study presents 5 years of monitoring data assessing water quality of a residential subdivision pond and adjacent tidal creek in coastal South Carolina, USA. The stormwater pond is eutrophic, as described by elevated concentrations of chlorophyll and phosphorus, and experiences periodic cyanobacterial blooms. A maximum monthly average chlorophyll concentration of 318.75 μg/L was measured in the stormwater pond and 227.63 μg/L in the tidal creek. Fecal coliform bacteria (FCB) levels were measured in both the pond and the tidal creek that exceeded health and safety standards for safe recreational use. A maximum monthly average FCB level of 1,247 CFU/100 mL was measured in the stormwater pond and 12,850 CFU/100 mL in the tidal creek. In addition, the presence of antibiotic resistant bacteria and pathogenic bacteria were detected. Low concentrations of herbicides (atrazine and 2,4-D: ), a fungicide (chlorothalonil), and insecticides (pyrethroids and imidacloprid) were measured. Seasonal trends were identified, with the winter months having the lowest concentrations of chlorophyll and FCB. Statistical differences between the stormwater pond and the tidal creek were also noted within seasons. The tidal creek had higher FCB levels than the stormwater pond in the spring and summer, whereas the stormwater pond had higher chlorophyll levels than the tidal creek in the summer and fall seasons. Chlorophyll and FCB levels in the stormwater pond were significantly correlated with monthly average temperature and total rainfall. Pesticide concentrations were also significantly correlated with temperature and rainfall. Pesticide concentrations in the stormwater pond were significantly correlated with pesticide concentrations in the adjacent tidal creek. Chlorophyll and FCB levels in the tidal creek, however, were not significantly correlated with levels in the pond. While stormwater ponds are beneficial in controlling flooding, they may pose environmental and human health risks due to biological and chemical contamination. Management to reduce residential runoff may improve water quality in coastal stormwater ponds and their adjacent estuarine ecosystems.

Modeling Primary Productivity in the Margin Ice Zone from Glider-Based Measurements of Chlorophyll and Light during the 2014 Miz Program

NASA Astrophysics Data System (ADS)

Perry, M. J.; Lee, C.; Rainville, L.; Cetinic, I.; Yang, E. J.; Kang, S. H.

2016-02-01

In late summer 2014 during the Marginal Ice Zone (MIZ) Experiment, an international project sponsored by ONR, four Seagliders transited open water, through the marginal ice zone, and under ice-covered regions in the Beaufort Sea, penetrating as far as 100 km into the ice pack. The gliders navigated either by GPS in open water or, when under the ice, by acoustics from sound sources embedded in the MIZ autonomous observing array. The glider sensor suite included temperature, temperature microstructure, salinity, oxygen, chlorophyll fluorescence, optical backscatter, and multi-spectral downwelling irradiance. Cruises on the IBRV Araon operating in the open Beaufort Sea and on the R/V Ukpik and Norseman operating in continental shelf waters off Alaska's north slope allowed us to construct proxy libraries for converting chlorophyll fluorescence to chlorophyll concentration and optical backscatter to particulate organic carbon concentration. Water samples were collected for chlorophyll and particulate organic carbon analysis on the cruises and aligned with optical profiles of fluorescence and backscatter using sensors that were factory calibrated at the same time as the glider sensors. Fields of chlorophyll, particulate organic carbon, light, and primary productivity are constructed from the glider data. Productivity is modeled as a function of chlorophyll and light, using photosynthesis-light (PE) models with available PE parameters from Arctic measurements. During August the region under the ice was characterized by a deep chlorophyll maximum layer with low rates of production in overlying waters. A phytoplankton bloom developed in open water at the end of September, preceding the rapid reformation of ice, despite shorter days and reduce irradiation.

Vertical distribution of chlorophyll a concentration and phytoplankton community composition from in situ fluorescence profiles: a first database for the global ocean

NASA Astrophysics Data System (ADS)

Sauzède, R.; Lavigne, H.; Claustre, H.; Uitz, J.; Schmechtig, C.; D'Ortenzio, F.; Guinet, C.; Pesant, S.

2015-04-01

In vivo chlorophyll a fluorescence is a proxy of chlorophyll a concentration, and is one of the most frequently measured biogeochemical properties in the ocean. Thousands of profiles are available from historical databases and the integration of fluorescence sensors to autonomous platforms led to a significant increase of chlorophyll fluorescence profile acquisition. To our knowledge, this important source of environmental data has not yet been included in global analyses. A total of 268 127 chlorophyll fluorescence profiles from several databases as well as published and unpublished individual sources were compiled. Following a robust quality control procedure detailed in the present paper, about 49 000 chlorophyll fluorescence profiles were converted in phytoplankton biomass (i.e. chlorophyll a concentration) and size-based community composition (i.e. microphytoplankton, nanophytoplankton and picophytoplankton), using a~method specifically developed to harmonize fluorescence profiles from diverse sources. The data span over five decades from 1958 to 2015, including observations from all major oceanic basins and all seasons, and depths ranging from surface to a median maximum sampling depth of around 700 m. Global maps of chlorophyll a concentration and phytoplankton community composition are presented here for the first time. Monthly climatologies were computed for three of Longhurst's ecological provinces in order to exemplify the potential use of the data product. Original data sets (raw fluorescence profiles) as well as calibrated profiles of phytoplankton biomass and community composition are available in open access at PANGAEA, Data Publisher for Earth and Environmental Science. Raw fluorescence profiles: http://doi.pangaea.de/10.1594/PANGAEA.844212 and Phytoplankton biomass and community composition: http://doi.pangaea.de/10.1594/PANGAEA.844485.

Phytoplankton Assemblage Patterns in the Southern Mid-Atlantic Bight

NASA Technical Reports Server (NTRS)

Makinen, Carla; Moisan, Tiffany A. (Editor)

2012-01-01

As part of the Wallops Coastal Oceans Observing Laboratory (Wa-COOL) Project, we sampled a time-series transect in the southern Mid-Atlantic Bight (MAB) biweekly. Our 2-year time-series data included physical parameters, nutrient concentrations, and chlorophyll a concentrations. A detailed phytoplankton assemblage structure was examined in the second year. During the 2-year study, chlorophyll a concentration (and ocean color satellite imagery) indicated that phytoplankton blooms occurred in January/February during mixing conditions and in early autumn under stratified conditions. The chlorophyll a concentrations ranged from 0.25 microgram 1(exp -1) to 15.49 microgram 1(exp -1) during the 2-year period. We were able to discriminate approximately 116 different species under phase contrast microscopy. Dominant phytoplankton included Skeletonema costatum, Rhizosolenia spp., and Pseudo-nitzschia pungens. In an attempt to determine phytoplankton species competition/succession within the assemblage, we calculated a Shannon Weaver diversity index for our diatom microscopy data. Diatom diversity was greatest during the winter and minimal during the spring. Diatom diversity was also greater at nearshore stations than at offshore stations. Individual genera appeared patchy, with surface and subsurface patches appearing abruptly and persisting for only 1-2 months at a time. The distribution of individual species differed significantly from bulk variables of the assemblage (chlorophyll a ) and total phytoplankton assemblage (cells), which indicates that phytoplankton species may be limited in growth in ways that differ from those of the total assemblage. Our study demonstrated a highly diverse phytoplankton assemblage throughout the year, with opportunistic species dominating during spring and fall in response to seasonal changes in temperature and nutrients in the southern MAB.

Impact of ocean acidification on Arctic phytoplankton blooms and dimethyl sulfide concentration under simulated ice-free and under-ice conditions

NASA Astrophysics Data System (ADS)

Hussherr, Rachel; Levasseur, Maurice; Lizotte, Martine; Tremblay, Jean-Éric; Mol, Jacoba; Thomas, Helmuth; Gosselin, Michel; Starr, Michel; Miller, Lisa A.; Jarniková, Tereza; Schuback, Nina; Mucci, Alfonso

2017-05-01

In an experimental assessment of the potential impact of Arctic Ocean acidification on seasonal phytoplankton blooms and associated dimethyl sulfide (DMS) dynamics, we incubated water from Baffin Bay under conditions representing an acidified Arctic Ocean. Using two light regimes simulating under-ice or subsurface chlorophyll maxima (low light; low PAR and no UVB) and ice-free (high light; high PAR + UVA + UVB) conditions, water collected at 38 m was exposed over 9 days to 6 levels of decreasing pH from 8.1 to 7.2. A phytoplankton bloom dominated by the centric diatoms Chaetoceros spp. reaching up to 7.5 µg chlorophyll a L-1 took place in all experimental bags. Total dimethylsulfoniopropionate (DMSPT) and DMS concentrations reached 155 and 19 nmol L-1, respectively. The sharp increase in DMSPT and DMS concentrations coincided with the exhaustion of NO3- in most microcosms, suggesting that nutrient stress stimulated DMS(P) synthesis by the diatom community. Under both light regimes, chlorophyll a and DMS concentrations decreased linearly with increasing proton concentration at all pH levels tested. Concentrations of DMSPT also decreased but only under high light and over a smaller pH range (from 8.1 to 7.6). In contrast to nano-phytoplankton (2-20 µm), pico-phytoplankton ( ≤ 2 µm) was stimulated by the decreasing pH. We furthermore observed no significant difference between the two light regimes tested in term of chlorophyll a, phytoplankton abundance and taxonomy, and DMSP and DMS net concentrations. These results show that ocean acidification could significantly decrease the algal biomass and inhibit DMS production during the seasonal phytoplankton bloom in the Arctic, with possible consequences for the regional climate.

Wind erodibility of soils at Fort Irwin, California (Mojave Desert), USA, before and after trampling disturbance: Implications for land management

USGS Publications Warehouse

Belnap, J.; Phillips, S.L.; Herrick, J.E.; Johansen, J.R.

2007-01-01

Recently disturbed and 'control' (i.e. less recently disturbed) soils in the Mojave Desert were compared for their vulnerability to wind erosion, using a wind tunnel, before and after being experimentally trampled. Before trampling, control sites had greater cyanobacterial biomass, soil surface stability, threshold friction velocities (TFV, i.e. the wind speed required to move soil particles), and sediment yield than sites that had been more recently disturbed by military manoeuvres. After trampling, all sites showed a large drop in TFVs and a concomitant increase in sediment yield. Simple correlation analyses showed that the decline in TFVs and the rise in sediment yield were significantly related to cyanobacterial biomass (as indicated by soil chlorophyll a). However, chlorophyll a amounts were very low compared to chlorophyll a amounts found at cooler desert sites, where chlorophyll a is often the most important factor in determining TFV and sediment yield. Multiple regression analyses showed that other factors at Fort Irwin were more important than cyanobacterial biomass in determining the overall site susceptibility to wind erosion. These factors included soil texture (especially the fine, medium and coarse sand fractions), rock cover, and the inherent stability of the soil (as indicated by subsurface soil stability tests). Thus, our results indicate that there is a threshold of biomass below which cyanobacterial crusts are not the dominant factor in soil vulnerability to wind erosion. Most undisturbed soil surfaces in the Mojave Desert region produce very little sediment, but even moderate disturbance increases soil loss from these sites. Because current weathering rates and dust inputs are very low, soil formation rates are low as well. Therefore, soil loss in this region is likely to have long-term effects.

Red edge measurements for remotely sensing plant chlorophyll content

NASA Astrophysics Data System (ADS)

Horler, D. N. H.; Dockray, M.; Barber, J.; Barringer, A. R.

The feasibility of using the wavelength of the maximum slope of the red edge of leaf reflectance spectra (λre) as an indication of plant chlorophyll status was examined in the laboratory for single leaves of several species. λre for each sample was determined by derivative reflectance spectroscopy. A high positive correlation was found between λre and leaf chlorophyll content for all species, although there were some differences in the quantitative nature of the relationship for plants of different types. The position of the red edge was found to be unaffected by simulated change in ground cover, but multiple leaf layers produced a shift in its position. Appropriate spectral measurements and processing for obtaining useful information from the red edge are discussed, and the potential of the red edge in relation to other spectral measurements is considered.

Seasonal nutrient and plankton dynamics in a physical-biological model of Crater Lake

USGS Publications Warehouse

Fennel, K.; Collier, R.; Larson, G.; Crawford, G.; Boss, E.

2007-01-01

A coupled 1D physical-biological model of Crater Lake is presented. The model simulates the seasonal evolution of two functional phytoplankton groups, total chlorophyll, and zooplankton in good quantitative agreement with observations from a 10-year monitoring study. During the stratified period in summer and early fall the model displays a marked vertical structure: the phytoplankton biomass of the functional group 1, which represents diatoms and dinoflagellates, has its highest concentration in the upper 40 m; the phytoplankton biomass of group 2, which represents chlorophyta, chrysophyta, cryptomonads and cyanobacteria, has its highest concentrations between 50 and 80 m, and phytoplankton chlorophyll has its maximum at 120 m depth. A similar vertical structure is a reoccurring feature in the available data. In the model the key process allowing a vertical separation between biomass and chlorophyll is photoacclimation. Vertical light attenuation (i.e., water clarity) and the physiological ability of phytoplankton to increase their cellular chlorophyll-to-biomass ratio are ultimately determining the location of the chlorophyll maximum. The location of the particle maxima on the other hand is determined by the balance between growth and losses and occurs where growth and losses equal. The vertical particle flux simulated by our model agrees well with flux measurements from a sediment trap. This motivated us to revisit a previously published study by Dymond et al. (1996). Dymond et al. used a box model to estimate the vertical particle flux and found a discrepancy by a factor 2.5-10 between their model-derived flux and measured fluxes from a sediment trap. Their box model neglected the exchange flux of dissolved and suspended organic matter, which, as our model and available data suggests is significant for the vertical exchange of nitrogen. Adjustment of Dymond et al.'s assumptions to account for dissolved and suspended nitrogen yields a flux estimate that is consistent with sediment trap measurements and our model. ?? 2007 Springer Science+Business Media B.V.

Simulation of annual plankton productivity cycle in the Black Sea by a one-dimensional physical-biological model

NASA Astrophysics Data System (ADS)

Oguz, Temel; Ducklow, Hugh; Malanotte-Rizzoli, Paola; Tugrul, Suleyman; Nezlin, Nikolai P.; Unluata, Umit

1996-07-01

The annual cycle of the plankton dynamics in the central Black Sea is studied by a one-dimensional vertically resolved physical-biological upper ocean model, coupled with the Mellor-Yamada level 2.5 turbulence closure scheme. The biological model involves interactions between the inorganic nitrogen (nitrate, ammonium), phytoplankton and herbivorous zooplankton biomasses, and detritus. Given a knowledge of physical forcing, the model simulates main observed seasonal and vertical characteristic features, in particular, formation of the cold intermediate water mass and yearly evolution of the upper layer stratification, the annual cycle of production with the fall and the spring blooms, and the subsurface phytoplankton maximum layer in summer, as well as realistic patterns of particulate organic carbon and nitrogen. The computed seasonal cycles of the chlorophyll and primary production distributions over the euphotic layer compare reasonably well with the data. Initiation of the spring bloom is shown to be critically dependent on the water column stability. It commences as soon as the convective mixing process weakens and before the seasonal stratification of surface waters begins to develop. It is followed by a weaker phytoplankton production at the time of establishment of the seasonal thermocline in April. While summer nutrient concentrations in the mixed layer are low enough to limit production, the layer between the thermocline and the base of the euphotic zone provides sufficient light and nutrient to support subsurface phytoplankton development. The autumn bloom takes place sometime between October and December depending on environmental conditions. In the case of weaker grazing pressure to control the growth rate, the autumn bloom shifts to December-January and emerges as the winter bloom, or, in some cases, is connected with the spring bloom to form one unified continuous bloom structure during the January-March period. These bloom structures are similar to the year-to-year variabilities present in the data.

Integrating seasonal information on nutrients and benthic algal biomass into stream water quality monitoring

USGS Publications Warehouse

Konrad, Christopher P.; Munn, Mark D.

2016-01-01

Benthic chlorophyll a (BChl a) and environmental factors that influence algal biomass were measured monthly from February through October in 22 streams from three agricultural regions of the United States. At-site maximum BChl a ranged from 14 to 406 mg/m2 and generally varied with dissolved inorganic nitrogen (DIN): 8 out of 9 sites with at-site median DIN >0.5 mg/L had maximum BChl a >100 mg/m2. BChl aaccrued and persisted at levels within 50% of at-site maximum for only one to three months. No dominant seasonal pattern for algal biomass accrual was observed in any region. A linear model with DIN, water surface gradient, and velocity accounted for most of the cross-site variation in maximum chlorophyll a(adjusted R2 = 0.7), but was no better than a single value of DIN = 0.5 mg/L for distinguishing between low and high-biomass sites. Studies of nutrient enrichment require multiple samples to estimate algal biomass with sufficient precision given the magnitude of temporal variability of algal biomass. An effective strategy for regional stream assessment of nutrient enrichment could be based on a relation between maximum BChl a and DIN based on repeat sampling at sites selected to represent a gradient in nutrients and application of the relation to a larger number of sites with synoptic nutrient information.

Optimization of Ocean Color Algorithms: Application to Satellite Data Merging

NASA Technical Reports Server (NTRS)

Ritorena, Stephane; Siegel, David A.; Morel, Andre

2004-01-01

The objective of the program is to develop and validate a procedure for ocean color data merging, which is one of the major goals of the SIMBIOS project. As part of the SIMBIOS Program, we have developed a merging method for ocean color data. Conversely to other methods our approach does not combine end-products like the subsurface chlorophyll concentration (chl) from different sensors to generate a unified product. Instead, our procedure uses the normalized water-leaving radiances L((sub wN)(lambda)) from single or multiple sensors and uses them in the inversion of a semi-analytical ocean color model that allows the retrieval of several ocean color variables simultaneously. Beside ensuring simultaneity and consistency of the retrievals (all products are derived from a single algorithm), this model-based approach has various benefits over techniques that blend end-products (e.g. chlorophyll): 1) It works with single or multiple data sources regardless of their specific bands; 2) It exploits band redundancies and band differences; 3) It accounts for uncertainties in the L((sub wN)(lambda)) data; 4) It provides uncertainty estimates for the retrieved variables.

Environmental dynamics of red Noctiluca scintillans bloom in tropical coastal waters.

PubMed

Baliarsingh, S K; Lotliker, Aneesh A; Trainer, Vera L; Wells, Mark L; Parida, Chandanlal; Sahu, Biraja K; Srichandan, Suchismita; Sahoo, Subhashree; Sahu, K C; Kumar, T Sinivasa

2016-10-15

An intense bloom of red Noctiluca scintillans (NS) occurred off the Rushikulya estuarine region along the east coast of India, an important site for mass nesting events of the vulnerable Olive Ridley sea turtle. At its peak, densities of NS were 3.3×10(5) cells-l(-1), with low relative abundance of other phytoplankton. The peak bloom coincided with high abundance of gelatinous planktivores which may have facilitated bloom development by their grazing on other zooplankton, particularly copepods. Ammonium concentrations increased by approximately 4-fold in the later stages of bloom, coincident with stable NS abundance and chlorophyll concentrations in the nano- and microplankton. This increase likely was attributable to release of intracellular ammonium accumulated through NS grazing. Dissolved oxygen concentrations decreased in sub-surface waters to near hypoxia. Micro-phytoplankton increasingly dominated chlorophyll-a biomass as the bloom declined, with diminishing picoplankton abundance likely the result of high predation by the ciliate Mesodinium rubrum. Together, these data illustrate factors that can disrupt ecosystem balance in this critically important Indian coastal region. Copyright © 2016 Elsevier Ltd. All rights reserved.

Eutrophic water purification efficiency using a combination of hydrodynamic cavitation and ozonation on a pilot scale.

PubMed

Li, Wei-Xin; Tang, Chuan-Dong; Wu, Zhi-Lin; Wang, Wei-Min; Zhang, Yu-Feng; Zhao, Yi; Cravotto, Giancarlo

2015-04-01

This paper presents the purification of eutrophic water using a combination of hydrodynamic cavitation (HC) and ozonation (O3) at a continuous flow of 0.8 m(3) h(-1) on a pilot scale. The maximum removal rate of chlorophyll a using O3 alone and the HC/O3 combination was 62.3 and 78.8%, respectively, under optimal conditions, where the ozone utilization efficiency was 64.5 and 94.8% and total energy consumption was 8.89 and 8.25 kWh m(-3), respectively. Thus, the removal rate of chlorophyll a and the ozone utilization efficiency were improved by 26.5% and 46.9%, respectively, by using the combined technique. Meanwhile, total energy consumption was reduced by 7.2%. Turbidity linearly decreased with chlorophyll a removal rate, but no linear relationship exists between the removal of COD or UV254 and chlorophyll a. As expected, the suction-cavitation-assisted O3 exhibited higher energy efficiency than the extrusion-cavitation-assisted O3 and O3 alone methods.

Cyanobacterial bloom in the world largest freshwater lake Baikal

NASA Astrophysics Data System (ADS)

Namsaraev, Zorigto; Melnikova, Anna; Ivanov, Vasiliy; Komova, Anastasia; Teslyuk, Anton

2018-02-01

Lake Baikal is a UNESCO World Heritage Site and holds 20% of the world’s freshwater reserves. On July 26, 2016, a cyanobacterial bloom of a green colour a few kilometers in size with a bad odor was discovered by local people in the Barguzinsky Bay on the eastern shore of Lake Baikal. Our study showed very high concentration of chlorophyll a (41.7 g/m3) in the sample of bloom. We found that the bloom was dominated by a nitrogen-fixing heterocystous cyanobacteria of the genus Dolichospermum. The mass accumulation of cyanobacteria in the lake water with an extremely high chlorophyll a concentration can be explained by a combination of several factors: the discharge of biologicaly-available nutrients, including phosphorus, into the water of Lake Baikal; low wind speed and weak water mixing; buoyant cyanobacterial cells on the lake surface, which drifted towards the eastern coast, where the maximum concentration of chlorophyll a was recorded. In the center of the Barguzinsky Bay and in the open part of Lake Baikal, according to satellite data, the chlorophyll a concentration is several orders of magnitude lower than at the shoreline.

Combined effects of lead and acid rain on photosynthesis in soybean seedlings.

PubMed

Hu, Huiqing; Wang, Lihong; Liao, Chenyu; Fan, Caixia; Zhou, Qing; Huang, Xiaohua

2014-10-01

To explore how lead (Pb) and acid rain simultaneously affect plants, the combined effects of Pb and acid rain on the chlorophyll content, chlorophyll fluorescence reaction, Hill reaction rate, and Mg(2+)-ATPase activity in soybean seedlings were investigated. The results indicated that, when soybean seedlings were treated with Pb or acid rain alone, the chlorophyll content, Hill reaction rate, Mg(2+)-ATPase activity, and maximal photochemical efficiency (F(v)/F(m)) were decreased, while the initial fluorescence (F 0) and maximum quantum yield (Y) were increased, compared with those of the control. The combined treatment with Pb and acid rain decreased the chlorophyll content, Hill reaction rate, Mg(2+)-ATPase activity, F(v)/F(m), and Y and increased F 0 in soybean seedlings. Under the combined treatment with Pb and acid rain, the two factors showed additive effects on the chlorophyll content in soybean seedlings and exhibited antagonistic effects on the Hill reaction rate. Under the combined treatment with high-concentration Pb and acid rain, the two factors exhibited synergistic effects on the Mg(2+)-ATPase activity, F 0, F v/F m, as well as Y. In summary, the inhibition of the photosynthetic process is an important physiological basis for the simultaneous actions of Pb and acid rain in soybean seedlings.

An underwater light attenuation scheme for marine ecosystem models.

PubMed

Penta, Bradley; Lee, Zhongping; Kudela, Raphael M; Palacios, Sherry L; Gray, Deric J; Jolliff, Jason K; Shulman, Igor G

2008-10-13

Simulation of underwater light is essential for modeling marine ecosystems. A new model of underwater light attenuation is presented and compared with previous models. In situ data collected in Monterey Bay, CA. during September 2006 are used for validation. It is demonstrated that while the new light model is computationally simple and efficient it maintains accuracy and flexibility. When this light model is incorporated into an ecosystem model, the correlation between modeled and observed coastal chlorophyll is improved over an eight-year time period. While the simulation of a deep chlorophyll maximum demonstrates the effect of the new model at depth.

Impact of abrupt deglacial climate change on tropical Atlantic subsurface temperatures

PubMed Central

Schmidt, Matthew W.; Chang, Ping; Hertzberg, Jennifer E.; Them, Theodore R.; Ji, Link; Otto-Bliesner, Bette L.

2012-01-01

Both instrumental data analyses and coupled ocean-atmosphere models indicate that Atlantic meridional overturning circulation (AMOC) variability is tightly linked to abrupt tropical North Atlantic (TNA) climate change through both atmospheric and oceanic processes. Although a slowdown of AMOC results in an atmospheric-induced surface cooling in the entire TNA, the subsurface experiences an even larger warming because of rapid reorganizations of ocean circulation patterns at intermediate water depths. Here, we reconstruct high-resolution temperature records using oxygen isotope values and Mg/Ca ratios in both surface- and subthermocline-dwelling planktonic foraminifera from a sediment core located in the TNA over the last 22 ky. Our results show significant changes in the vertical thermal gradient of the upper water column, with the warmest subsurface temperatures of the last deglacial transition corresponding to the onset of the Younger Dryas. Furthermore, we present new analyses of a climate model simulation forced with freshwater discharge into the North Atlantic under Last Glacial Maximum forcings and boundary conditions that reveal a maximum subsurface warming in the vicinity of the core site and a vertical thermal gradient change at the onset of AMOC weakening, consistent with the reconstructed record. Together, our proxy reconstructions and modeling results provide convincing evidence for a subsurface oceanic teleconnection linking high-latitude North Atlantic climate to the tropical Atlantic during periods of reduced AMOC across the last deglacial transition. PMID:22908256

Impact of abrupt deglacial climate change on tropical Atlantic subsurface temperatures.

PubMed

Schmidt, Matthew W; Chang, Ping; Hertzberg, Jennifer E; Them, Theodore R; Ji, Link; J, Link; Otto-Bliesner, Bette L

2012-09-04

Both instrumental data analyses and coupled ocean-atmosphere models indicate that Atlantic meridional overturning circulation (AMOC) variability is tightly linked to abrupt tropical North Atlantic (TNA) climate change through both atmospheric and oceanic processes. Although a slowdown of AMOC results in an atmospheric-induced surface cooling in the entire TNA, the subsurface experiences an even larger warming because of rapid reorganizations of ocean circulation patterns at intermediate water depths. Here, we reconstruct high-resolution temperature records using oxygen isotope values and Mg/Ca ratios in both surface- and subthermocline-dwelling planktonic foraminifera from a sediment core located in the TNA over the last 22 ky. Our results show significant changes in the vertical thermal gradient of the upper water column, with the warmest subsurface temperatures of the last deglacial transition corresponding to the onset of the Younger Dryas. Furthermore, we present new analyses of a climate model simulation forced with freshwater discharge into the North Atlantic under Last Glacial Maximum forcings and boundary conditions that reveal a maximum subsurface warming in the vicinity of the core site and a vertical thermal gradient change at the onset of AMOC weakening, consistent with the reconstructed record. Together, our proxy reconstructions and modeling results provide convincing evidence for a subsurface oceanic teleconnection linking high-latitude North Atlantic climate to the tropical Atlantic during periods of reduced AMOC across the last deglacial transition.

The correlation of the maximum intensity of fluorescence with pigment characteristics of leaves of Betula pendula

NASA Astrophysics Data System (ADS)

Zavoruev, V. V.; Zavorueva, E. N.

2015-11-01

Using fluorimeter Junior PAM (Heinz Walz GmbH, Germany) the fluorescence parameters of leaves of Betula pendula are investigated. A linear dependence of the maximum fluorescence (Fm) of leaves from the ratio of total chlorophylls concentration to concentration of carotenoids is obtained. Such dependence is found for samples collected during the period of vegetation and for simultaneous selection of colored leaves.

Association between mean and interannual equatorial Indian Ocean subsurface temperature bias in a coupled model

NASA Astrophysics Data System (ADS)

Srinivas, G.; Chowdary, Jasti S.; Gnanaseelan, C.; Prasad, K. V. S. R.; Karmakar, Ananya; Parekh, Anant

2018-03-01

In the present study the association between mean and interannual subsurface temperature bias over the equatorial Indian Ocean (EIO) is investigated during boreal summer (June through September; JJAS) in the National Centers for Environmental Prediction (NCEP) Climate Forecast System (CFSv2) hindcast. Anomalously high subsurface warm bias (greater than 3 °C) over the eastern EIO (EEIO) region is noted in CFSv2 during summer, which is higher compared to other parts of the tropical Indian Ocean. Prominent eastward current bias in the upper 100 m over the EIO region induced by anomalous westerly winds is primarily responsible for subsurface temperature bias. The eastward currents transport warm water to the EEIO and is pushed down to subsurface due to downwelling. Thus biases in both horizontal and vertical currents over the EIO region support subsurface warm bias. The evolution of systematic subsurface warm bias in the model shows strong interannual variability. These maximum subsurface warming episodes over the EEIO are mainly associated with La Niña like forcing. Strong convergence of low level winds over the EEIO and Maritime continent enhanced the westerly wind bias over the EIO during maximum warming years. This low level convergence of wind is induced by the bias in the gradient in the mean sea level pressure with positive bias over western EIO and negative bias over EEIO and parts of western Pacific. Consequently, changes in the atmospheric circulation associated with La Niña like conditions affected the ocean dynamics by modulating the current bias thereby enhancing the subsurface warm bias over the EEIO. It is identified that EEIO subsurface warming is stronger when La Niña co-occurred with negative Indian Ocean Dipole events as compared to La Niña only years in the model. Ocean general circulation model (OGCM) experiments forced with CFSv2 winds clearly support our hypothesis that ocean dynamics influenced by westerly winds bias is primarily responsible for the strong subsurface warm bias over the EEIO. This study advocates the importance of understanding the ability of the models in representing the large scale air-sea interactions over the tropics and their impact on ocean biases for better monsoon forecast.

[Effects of acid rain stress on Eleocarpus glabripetalus seedlings leaf chlorophyll fluorescence characteristics and growth].

PubMed

Yin, Xiu-Min; Yu, Shu-Quan; Jiang, Hong; Liu, Mei-Hu

2010-06-01

A pot experiment was conducted to study the Eleocarpus glabripetalus seedlings leaf chlorophyll fluorescence characteristics and growth in different seasons under simulated acid rain stress (heavy, pH = 2. 5; moderate, pH = 4.0; and control, pH = 5.6). In the same treatments, the leaf relative chlorophyll content (SPAD), maximum PS II photochemical efficiency (F(v)/F(m)), actual PSII photochemical quantum yield (phi(PS II)), plant height, and stem diameter in different seasons were all in the order of October > July > April > January. In the same seasons, all the parameters were in the order of heavy acid rain > moderate acid rain > control. The interactions between different acid rain stress and seasons showed significant effects on the SPAD, F(v)/F(m), plant height, and stem diameter, but lesser effects on phi(PS II), qp and qN.

Prevalence of the Chloroflexi-Related SAR202 Bacterioplankton Cluster throughout the Mesopelagic Zone and Deep Ocean†

PubMed Central

Morris, R. M.; Rappé, M. S.; Urbach, E.; Connon, S. A.; Giovannoni, S. J.

2004-01-01

Since their initial discovery in samples from the north Atlantic Ocean, 16S rRNA genes related to the environmental gene clone cluster known as SAR202 have been recovered from pelagic freshwater, marine sediment, soil, and deep subsurface terrestrial environments. Together, these clones form a major, monophyletic subgroup of the phylum Chloroflexi. While members of this diverse group are consistently identified in the marine environment, there are currently no cultured representatives, and very little is known about their distribution or abundance in the world's oceans. In this study, published and newly identified SAR202-related 16S rRNA gene sequences were used to further resolve the phylogeny of this cluster and to design taxon-specific oligonucleotide probes for fluorescence in situ hybridization. Direct cell counts from the Bermuda Atlantic time series study site in the north Atlantic Ocean, the Hawaii ocean time series site in the central Pacific Ocean, and along the Newport hydroline in eastern Pacific coastal waters showed that SAR202 cluster cells were most abundant below the deep chlorophyll maximum and that they persisted to 3,600 m in the Atlantic Ocean and to 4,000 m in the Pacific Ocean, the deepest samples used in this study. On average, members of the SAR202 group accounted for 10.2% (±5.7%) of all DNA-containing bacterioplankton between 500 and 4,000 m. PMID:15128540

A Unimodal Species Response Model Relating Traits to Environment with Application to Phytoplankton Communities

PubMed Central

Jamil, Tahira; Kruk, Carla; ter Braak, Cajo J. F.

2014-01-01

In this paper we attempt to explain observed niche differences among species (i.e. differences in their distribution along environmental gradients) by differences in trait values (e.g. volume) in phytoplankton communities. For this, we propose the trait-modulated Gaussian logistic model in which the niche parameters (optimum, tolerance and maximum) are made linearly dependent on species traits. The model is fitted to data in the Bayesian framework using OpenBUGS (Bayesian inference Using Gibbs Sampling) to identify according to which environmental variables there is niche differentiation among species and traits. We illustrate the method with phytoplankton community data of 203 lakes located within four climate zones and associated measurements on 11 environmental variables and six morphological species traits of 60 species. Temperature and chlorophyll-a (with opposite signs) described well the niche structure of all species. Results showed that about 25% of the variance in the niche centres with respect to chlorophyll-a were accounted for by traits, whereas niche width and maximum could not be predicted by traits. Volume, mucilage, flagella and siliceous exoskeleton are found to be the most important traits to explain the niche centres. Species were clustered in two groups with different niches structures, group 1 high temperature-low chlorophyll-a species and group 2 low temperature-high chlorophyll-a species. Compared to group 2, species in group 1 had larger volume but lower surface area, had more often flagella but neither mucilage nor siliceous exoskeleton. These results might help in understanding the effect of environmental changes on phytoplankton community. The proposed method, therefore, can also apply to other aquatic or terrestrial communities for which individual traits and environmental conditioning factors are available. PMID:24835582

Impacts of microtopographic snow redistribution and lateral subsurface processes on hydrologic and thermal states in an Arctic polygonal ground ecosystem: a case study using ELM-3D v1.0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bisht, Gautam; Riley, William J.; Wainwright, Haruko M.

Microtopographic features, such as polygonal ground, are characteristic sources of landscape heterogeneity in the Alaskan Arctic coastal plain. In this study, we analyze the effects of snow redistribution (SR) and lateral subsurface processes on hydrologic and thermal states at a polygonal tundra site near Barrow, Alaska. We extended the land model integrated in the E3SM to redistribute incoming snow by accounting for microtopography and incorporated subsurface lateral transport of water and energy (ELM-3D v1.0). Multiple 10-year-long simulations were performed for a transect across a polygonal tundra landscape at the Barrow Environmental Observatory in Alaska to isolate the impact of SRmore » and subsurface process representation. When SR was included, model predictions better agreed (higher R 2, lower bias and RMSE) with observed differences in snow depth between polygonal rims and centers. The model was also able to accurately reproduce observed soil temperature vertical profiles in the polygon rims and centers (overall bias, RMSE, and R 2 of 0.59°C, 1.82°C, and 0.99, respectively). The spatial heterogeneity of snow depth during the winter due to SR generated surface soil temperature heterogeneity that propagated in depth and time and led to ~ 10 cm shallower and ~ 5 cm deeper maximum annual thaw depths under the polygon rims and centers, respectively. Additionally, SR led to spatial heterogeneity in surface energy fluxes and soil moisture during the summer. Excluding lateral subsurface hydrologic and thermal processes led to small effects on mean states but an overestimation of spatial variability in soil moisture and soil temperature as subsurface liquid pressure and thermal gradients were artificially prevented from spatially dissipating over time. The effect of lateral subsurface processes on maximum thaw depths was modest, with mean absolute differences of ~ 3 cm. Our integration of three-dimensional subsurface hydrologic and thermal subsurface dynamics in the E3SM land model will facilitate a wide range of analyses heretofore impossible in an ESM context.« less

Impacts of microtopographic snow redistribution and lateral subsurface processes on hydrologic and thermal states in an Arctic polygonal ground ecosystem: a case study using ELM-3D v1.0

DOE PAGES

Bisht, Gautam; Riley, William J.; Wainwright, Haruko M.; ...

2018-01-08

Microtopographic features, such as polygonal ground, are characteristic sources of landscape heterogeneity in the Alaskan Arctic coastal plain. In this study, we analyze the effects of snow redistribution (SR) and lateral subsurface processes on hydrologic and thermal states at a polygonal tundra site near Barrow, Alaska. We extended the land model integrated in the E3SM to redistribute incoming snow by accounting for microtopography and incorporated subsurface lateral transport of water and energy (ELM-3D v1.0). Multiple 10-year-long simulations were performed for a transect across a polygonal tundra landscape at the Barrow Environmental Observatory in Alaska to isolate the impact of SRmore » and subsurface process representation. When SR was included, model predictions better agreed (higher R 2, lower bias and RMSE) with observed differences in snow depth between polygonal rims and centers. The model was also able to accurately reproduce observed soil temperature vertical profiles in the polygon rims and centers (overall bias, RMSE, and R 2 of 0.59°C, 1.82°C, and 0.99, respectively). The spatial heterogeneity of snow depth during the winter due to SR generated surface soil temperature heterogeneity that propagated in depth and time and led to ~ 10 cm shallower and ~ 5 cm deeper maximum annual thaw depths under the polygon rims and centers, respectively. Additionally, SR led to spatial heterogeneity in surface energy fluxes and soil moisture during the summer. Excluding lateral subsurface hydrologic and thermal processes led to small effects on mean states but an overestimation of spatial variability in soil moisture and soil temperature as subsurface liquid pressure and thermal gradients were artificially prevented from spatially dissipating over time. The effect of lateral subsurface processes on maximum thaw depths was modest, with mean absolute differences of ~ 3 cm. Our integration of three-dimensional subsurface hydrologic and thermal subsurface dynamics in the E3SM land model will facilitate a wide range of analyses heretofore impossible in an ESM context.« less

Impacts of microtopographic snow redistribution and lateral subsurface processes on hydrologic and thermal states in an Arctic polygonal ground ecosystem: a case study using ELM-3D v1.0

NASA Astrophysics Data System (ADS)

Bisht, Gautam; Riley, William J.; Wainwright, Haruko M.; Dafflon, Baptiste; Yuan, Fengming; Romanovsky, Vladimir E.

2018-01-01

Microtopographic features, such as polygonal ground, are characteristic sources of landscape heterogeneity in the Alaskan Arctic coastal plain. Here, we analyze the effects of snow redistribution (SR) and lateral subsurface processes on hydrologic and thermal states at a polygonal tundra site near Barrow, Alaska. We extended the land model integrated in the E3SM to redistribute incoming snow by accounting for microtopography and incorporated subsurface lateral transport of water and energy (ELM-3D v1.0). Multiple 10-year-long simulations were performed for a transect across a polygonal tundra landscape at the Barrow Environmental Observatory in Alaska to isolate the impact of SR and subsurface process representation. When SR was included, model predictions better agreed (higher R2, lower bias and RMSE) with observed differences in snow depth between polygonal rims and centers. The model was also able to accurately reproduce observed soil temperature vertical profiles in the polygon rims and centers (overall bias, RMSE, and R2 of 0.59 °C, 1.82 °C, and 0.99, respectively). The spatial heterogeneity of snow depth during the winter due to SR generated surface soil temperature heterogeneity that propagated in depth and time and led to ˜ 10 cm shallower and ˜ 5 cm deeper maximum annual thaw depths under the polygon rims and centers, respectively. Additionally, SR led to spatial heterogeneity in surface energy fluxes and soil moisture during the summer. Excluding lateral subsurface hydrologic and thermal processes led to small effects on mean states but an overestimation of spatial variability in soil moisture and soil temperature as subsurface liquid pressure and thermal gradients were artificially prevented from spatially dissipating over time. The effect of lateral subsurface processes on maximum thaw depths was modest, with mean absolute differences of ˜ 3 cm. Our integration of three-dimensional subsurface hydrologic and thermal subsurface dynamics in the E3SM land model will facilitate a wide range of analyses heretofore impossible in an ESM context.

How to avoid eutrophication in coastal seas? A new approach to derive river-specific combined nitrate and phosphate maximum concentrations.

PubMed

Ménesguen, Alain; Desmit, Xavier; Dulière, Valérie; Lacroix, Geneviève; Thouvenin, Bénédicte; Thieu, Vincent; Dussauze, Morgan

2018-07-01

Since 1950, increase in nitrogen (N) and phosphorus (P) river loadings in the North-East Atlantic (NEA) continental seas has induced a deep change in the marine coastal ecosystems, leading to eutrophication symptoms in some areas. In order to recover a Good Ecological Status (GES) in the NEA, as required by European Water Framework Directive (WFD) and Marine Strategy Framework Directive (MSFD), reductions in N- and P-river loadings are necessary but they need to be minimal due to their economic impact on the farming industry. In the frame of the "EMoSEM" European project, we used two marine 3D ecological models (ECO-MARS3D, MIRO&CO) covering the Bay of Biscay, the English Channel and the southern North Sea to estimate the contributions of various sources (riverine, oceanic and atmospheric) to the winter nitrate and phosphate marine concentrations. The various distributed descriptors provided by the simulations allowed also to find a log-linear relationship between the 90th percentile of satellite-derived chlorophyll concentrations and the "fully bioavailable" nutrients, i.e. simulated nutrient concentrations weighted by light and stoichiometric limitation factors. Any GES threshold on the 90th percentile of marine chlorophyll concentration can then be translated in maximum admissible 'fully bioavailable' DIN and DIP concentrations, from which an iterative linear optimization method can compute river-specific minimal abatements of N and P loadings. The method has been applied to four major river groups, assuming either a conservative (8μgChlL -1 ) or a more socially acceptable (15μgChlL -1 ) GES chlorophyll concentration threshold. In the conservative case, maximum admissible winter concentrations for nutrients correspond to marine background values, whereas in the lenient case, they are close to values recommended by the WFD/MSFD. Both models suggest that to reach chlorophyll GES, strong reductions of DIN and DIP are required in the Eastern French and Belgian-Dutch river groups. Copyright © 2018 Elsevier B.V. All rights reserved.

Assessing the Skill of Chlorophyll Forecasts: Latest Development and Challenges Ahead Using the Case of the Equatorial Pacific

NASA Technical Reports Server (NTRS)

Rousseaux, Cecile S.; Gregg, Watson W.

2018-01-01

Using a global ocean biogeochemical model combined with a forecast of physical oceanic and atmospheric variables from the NASA Global Modeling and Assimilation Office, we assess the skill of a chlorophyll concentrations forecast in the Equatorial Pacific for the period 2012-2015 with a focus on the forecast of the onset of the 2015 El Nino event. Using a series of retrospective 9-month hindcasts, we assess the uncertainties of the forecasted chlorophyll by comparing the monthly total chlorophyll concentration from the forecast with the corresponding monthly ocean chlorophyll data from the Suomi-National Polar-orbiting Partnership Visible Infrared Imaging Radiometer Suite (S-NPP VIIRS) satellite. The forecast was able to reproduce the phasing of the variability in chlorophyll concentration in the Equatorial Pacific, including the beginning of the 2015-2016 El Nino. The anomaly correlation coefficient (ACC) was significant (p less than 0.05) for forecast at 1-month (R=0.33), 8-month (R=0.42) and 9-month (R=0.41) lead times. The root mean square error (RMSE) increased from 0.0399 microgram chl L(exp -1) for the 1-month lead forecast to a maximum of 0.0472 microgram chl L(exp -1) for the 9-month lead forecast indicating that the forecast of the amplitude of chlorophyll concentration variability was getting worse. Forecasts with a 3-month lead time were on average the closest to the S-NPP VIIRS data (23% or 0.033 microgram chl L(exp -1)) while the forecast with a 9-month lead time were the furthest (31% or 0.042 microgram chl L(exp -1)). These results indicate the potential for forecasting chlorophyll concentration in this region but also highlights various deficiencies and suggestions for improvements to the current biogeochemical forecasting system. This system provides an initial basis for future applications including the effects of El Nino events on fisheries and other ocean resources given improvements identified in the analysis of these results.

Vertical distribution of chlorophyll a concentration and phytoplankton community composition from in situ fluorescence profiles: a first database for the global ocean

NASA Astrophysics Data System (ADS)

Sauzède, R.; Lavigne, H.; Claustre, H.; Uitz, J.; Schmechtig, C.; D'Ortenzio, F.; Guinet, C.; Pesant, S.

2015-10-01

In vivo chlorophyll a fluorescence is a proxy of chlorophyll a concentration, and is one of the most frequently measured biogeochemical properties in the ocean. Thousands of profiles are available from historical databases and the integration of fluorescence sensors to autonomous platforms has led to a significant increase of chlorophyll fluorescence profile acquisition. To our knowledge, this important source of environmental data has not yet been included in global analyses. A total of 268 127 chlorophyll fluorescence profiles from several databases as well as published and unpublished individual sources were compiled. Following a robust quality control procedure detailed in the present paper, about 49 000 chlorophyll fluorescence profiles were converted into phytoplankton biomass (i.e., chlorophyll a concentration) and size-based community composition (i.e., microphytoplankton, nanophytoplankton and picophytoplankton), using a method specifically developed to harmonize fluorescence profiles from diverse sources. The data span over 5 decades from 1958 to 2015, including observations from all major oceanic basins and all seasons, and depths ranging from the surface to a median maximum sampling depth of around 700 m. Global maps of chlorophyll a concentration and phytoplankton community composition are presented here for the first time. Monthly climatologies were computed for three of Longhurst's ecological provinces in order to exemplify the potential use of the data product. Original data sets (raw fluorescence profiles) as well as calibrated profiles of phytoplankton biomass and community composition are available on open access at PANGAEA, Data Publisher for Earth and Environmental Science. Raw fluorescence profiles: http://doi.pangaea.de/10.1594/PANGAEA.844212 and Phytoplankton biomass and community composition: http://doi.pangaea.de/10.1594/PANGAEA.844485

Forecasting Ocean Chlorophyll in the Equatorial Pacific.

PubMed

Rousseaux, Cecile S; Gregg, Watson W

2017-01-01

Using a global ocean biogeochemical model combined with a forecast of physical oceanic and atmospheric variables from the NASA Global Modeling and Assimilation Office, we assess the skill of a chlorophyll concentrations forecast in the Equatorial Pacific for the period 2012-2015 with a focus on the forecast of the onset of the 2015 El Niño event. Using a series of retrospective 9-month hindcasts, we assess the uncertainties of the forecasted chlorophyll by comparing the monthly total chlorophyll concentration from the forecast with the corresponding monthly ocean chlorophyll data from the Suomi-National Polar-orbiting Partnership Visible Infrared Imaging Radiometer Suite (S-NPP VIIRS) satellite. The forecast was able to reproduce the phasing of the variability in chlorophyll concentration in the Equatorial Pacific, including the beginning of the 2015-2016 El Niño. The anomaly correlation coefficient (ACC) was significant ( p < 0.05) for forecast at 1-month ( R = 0.33), 8-month ( R = 0.42) and 9-month ( R = 0.41) lead times. The root mean square error (RMSE) increased from 0.0399 μg chl L -1 for the 1-month lead forecast to a maximum of 0.0472 μg chl L -1 for the 9-month lead forecast indicating that the forecast of the amplitude of chlorophyll concentration variability was getting worse. Forecasts with a 3-month lead time were on average the closest to the S-NPP VIIRS data (23% or 0.033 μg chl L -1 ) while the forecast with a 9-month lead time were the furthest (31% or 0.042 μg chl L -1 ). These results indicate the potential for forecasting chlorophyll concentration in this region but also highlights various deficiencies and suggestions for improvements to the current biogeochemical forecasting system. This system provides an initial basis for future applications including the effects of El Niño events on fisheries and other ocean resources given improvements identified in the analysis of these results.

Negative response of photosynthesis to natural and projected high seawater temperatures estimated by pulse amplitude modulation fluorometry in a temperate coral.

PubMed

Caroselli, Erik; Falini, Giuseppe; Goffredo, Stefano; Dubinsky, Zvy; Levy, Oren

2015-01-01

Balanophyllia europaea is a shallow water solitary zooxanthellate coral, endemic to the Mediterranean Sea. Extensive field studies across a latitudinal temperature gradient highlight detrimental effects of rising temperatures on its growth, demography, and skeletal characteristics, suggesting that depression of photosynthesis at high temperatures might cause these negative effects. Here we test this hypothesis by analyzing, by means of pulse amplitude modulation fluorometry, the photosynthetic efficiency of B. europaea specimens exposed in aquaria to the annual range of temperatures experienced in the field (13, 18, and 28°C), and two extreme temperatures expected for 2100 as a consequence of global warming (29 and 32°C). The indicators of photosynthetic performance analyzed (maximum and effective quantum yield) showed that maximum efficiency was reached at 20.0-21.6°C, slightly higher than the annual mean temperature in the field (18°C). Photosynthetic efficiency decreased from 20.0 to 13°C and even more strongly from 21.6 to 32°C. An unusual form of bleaching was observed, with a maximum zooxanthellae density at 18°C that strongly decreased from 18 to 32°C. Chlorophyll a concentration per zooxanthellae cell showed an opposite trend as it was minimal at 18°C and increased from 18 to 32°C. Since the areal chlorophyll concentration is the product of the zooxanthellae density and its cellular content, these trends resulted in a homogeneous chlorophyll concentration per coral surface across temperature treatments. This confirms that B. europaea photosynthesis is progressively depressed at temperatures >21.6°C, supporting previous hypotheses raised by the studies on growth and demography of this species. This study also confirms the threats posed to this species by the ongoing seawater warming.

Acclimation of Haslea ostrearia to light of different spectral qualities - confirmation of 'chromatic adaptation' in diatoms.

PubMed

Mouget, Jean-Luc; Rosa, Philippe; Tremblin, Gérard

2004-07-19

The marine diatom Haslea ostrearia was cultured under light of different qualities, white (WL), blue (BL), green (GL), yellow (YL), red (RL), and far-red (FRL) and at two irradiance levels, low and high (20 and 100 micromolphotonsm(-2)s(-1), respectively). The effects of the different light regimes were studied on growth, pigment content, and photosynthesis, estimated by the modulated fluorescence of chlorophyll, as relative electron transport rate (rETR). For all the light qualities studied, growth rates were higher at high irradiance. Compared to the corresponding WL controls, growth was higher in BL and lower in YL at low irradiance, and lower in YL and GL at high irradiance. Except for YL, almost all the pigment contents of the cells were lower at high irradiance. At low irradiance, cell pigment contents (chlorophyll a and c, fucoxanthin) and pigment ratios (in function of chlorophyll a) were lower in YL, RL, and FRL. Whatever the irradiance level, the maximum PSII quantum efficiency (F(v)/F(m) remained almost constant for WL, BL, and GL. Other fluorescence parameters (photochemical quenching, rETR(max), and alpha, the maximum light utilization coefficient) were lower in GL, YL, RL, and FRL, at low irradiance. Although not statistically significant, BL caused an increase in these fluorescence parameters. These findings are interpreted as evidence that inverse chromatic acclimation occurs in diatoms.

Deriving depths of deep chlorophyll maximum and water inherent optical properties: A regional model

NASA Astrophysics Data System (ADS)

Xiu, Peng; Liu, Yuguang; Li, Gang; Xu, Qing; Zong, Haibo; Rong, Zengrui; Yin, Xiaobin; Chai, Fei

2009-10-01

The Bohai Sea is a semi-enclosed inland sea with case-2 waters near the coast. A comprehensive set of optical data was collected during three cruises in June, August, and September 2005 in the Bohai Sea. The vertical profile measurements, such as chlorophyll concentration, water turbidity, downwelling irradiance, and diffuse attenuation coefficient, showed that the Bohai Sea was vertically stratified with a relative clear upper layer superimposed on a turbid lower layer. The upper layer was found to correspond to the euphotic zone and the deep chlorophyll maximum (DCM) occurs at the base of this layer. By tuning a semi-analytical model (Lee et al., 1998, 1999) for the Bohai Sea, we developed a method to derive water inherent optical properties and the depth of DCM from above-surface measurements. Assuming a 'fake' bottom in the stratified water, this new method retrieves the 'fake' bottom depth, which is highly correlated with the DCM depth. The average relative error between derived and measured values is 33.9% for phytoplankton absorption at 440 nm, 25.6% for colored detrital matter (detritus plus gelbstoff) absorption at 440 nm, and 24.2% for the DCM depth. This modified method can retrieve water inherent optical properties and monitor the depth of DCM in the Bohai Sea, and the method is also applicable to other stratified waters.

Ocean (de)oxygenation from the Last Glacial Maximum to the twenty-first century: insights from Earth System models.

PubMed

Bopp, L; Resplandy, L; Untersee, A; Le Mezo, P; Kageyama, M

2017-09-13

All Earth System models project a consistent decrease in the oxygen content of oceans for the coming decades because of ocean warming, reduced ventilation and increased stratification. But large uncertainties for these future projections of ocean deoxygenation remain for the subsurface tropical oceans where the major oxygen minimum zones are located. Here, we combine global warming projections, model-based estimates of natural short-term variability, as well as data and model estimates of the Last Glacial Maximum (LGM) ocean oxygenation to gain some insights into the major mechanisms of oxygenation changes across these different time scales. We show that the primary uncertainty on future ocean deoxygenation in the subsurface tropical oceans is in fact controlled by a robust compensation between decreasing oxygen saturation (O 2sat ) due to warming and decreasing apparent oxygen utilization (AOU) due to increased ventilation of the corresponding water masses. Modelled short-term natural variability in subsurface oxygen levels also reveals a compensation between O 2sat and AOU, controlled by the latter. Finally, using a model simulation of the LGM, reproducing data-based reconstructions of past ocean (de)oxygenation, we show that the deoxygenation trend of the subsurface ocean during deglaciation was controlled by a combination of warming-induced decreasing O 2sat and increasing AOU driven by a reduced ventilation of tropical subsurface waters.This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'. © 2017 The Author(s).

Ocean (de)oxygenation from the Last Glacial Maximum to the twenty-first century: insights from Earth System models

NASA Astrophysics Data System (ADS)

Bopp, L.; Resplandy, L.; Untersee, A.; Le Mezo, P.; Kageyama, M.

2017-08-01

All Earth System models project a consistent decrease in the oxygen content of oceans for the coming decades because of ocean warming, reduced ventilation and increased stratification. But large uncertainties for these future projections of ocean deoxygenation remain for the subsurface tropical oceans where the major oxygen minimum zones are located. Here, we combine global warming projections, model-based estimates of natural short-term variability, as well as data and model estimates of the Last Glacial Maximum (LGM) ocean oxygenation to gain some insights into the major mechanisms of oxygenation changes across these different time scales. We show that the primary uncertainty on future ocean deoxygenation in the subsurface tropical oceans is in fact controlled by a robust compensation between decreasing oxygen saturation (O2sat) due to warming and decreasing apparent oxygen utilization (AOU) due to increased ventilation of the corresponding water masses. Modelled short-term natural variability in subsurface oxygen levels also reveals a compensation between O2sat and AOU, controlled by the latter. Finally, using a model simulation of the LGM, reproducing data-based reconstructions of past ocean (de)oxygenation, we show that the deoxygenation trend of the subsurface ocean during deglaciation was controlled by a combination of warming-induced decreasing O2sat and increasing AOU driven by a reduced ventilation of tropical subsurface waters. This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'.

Leaf Optical Properties in Higher Plants: Linking Spectral Characteristics with Plant Stress

NASA Technical Reports Server (NTRS)

Carter, Gregory A.; Knapp, Alan K.

1999-01-01

A number of studies have addressed responses of leaf spectral reflectance, transmittance, or absorptance to physiological stress. Stressors included dehydration, ozone, herbicides, disease, insufficient mycorrhizae and N fertilization, flooding and insects. Species included conifers, grasses, and broadleaved trees. Increased reflectance with maximum responses near 700 nm wavelength occurred in all cases. Varying the chlorophyll content in leaves or pigment extracts can simulate this effect. Thus, common optical responses to stress result from decreases in leaf chlorophyll contents or the capacity of chloroplasts to absorb light. Leaf optic can be quite sensitive to any stressor that alters soil-plant-atmosphere processes.

Diurnal variability in turbidity and coral fluorescence on a fringing reef flat: Southern Molokai, Hawaii

USGS Publications Warehouse

Piniak, G.A.; Storlazzi, C.D.

2008-01-01

Terrigenous sediment in the nearshore environment can pose both acute and chronic stresses to coral reefs. The reef flat off southern Molokai, Hawaii, typically experiences daily turbidity events, in which trade winds and tides combine to resuspend terrigenous sediment and transport it alongshore. These chronic turbidity events could play a role in restricting coral distribution on the reef flat by reducing the light available for photosynthesis. This study describes the effects of these turbidity events on the Hawaiian reef coral Montipora capitata using in situ diurnal measurements of turbidity, light levels, and chlorophyll fluorescence yield via pulse-amplitude-modulated (PAM) fluorometry. Average surface irradiance was similar in the morning and the afternoon, while increased afternoon turbidity resulted in lower subsurface irradiance, higher fluorescence yield (??F/Fm???), and lower relative electron transport rates (rETR). Model calculations based on observed light extinction coeffecients suggest that in the absence of turbidity events, afternoon subsurface irradiances would be 1.43 times higher than observed, resulting in rETR for M. capitata that are 1.40 times higher.

Synergistic Effects of Bacillus amyloliquefaciens (GB03) and Water Retaining Agent on Drought Tolerance of Perennial Ryegrass

PubMed Central

Su, An-Yu; Niu, Shu-Qi; Liu, Yuan-Zheng; He, Ao-Lei; Zhao, Qi; Li, Meng-Fei; Han, Qing-Qing; Ali Khan, Sardar

2017-01-01

Water retaining agent (WRA) is widely used for soil erosion control and agricultural water saving. Here, we evaluated the effects of the combination of beneficial soil bacterium Bacillus amyloliquefaciens strain GB03 and WRA (the compound is super absorbent hydrogels) on drought tolerance of perennial ryegrass (Lolium perenne L.). Seedlings were subjected to natural drought for maximum 20 days by stopping watering and then rewatered for seven days. Plant survival rate, biomass, photosynthesis, water status and leaf cell membrane integrity were measured. The results showed that under severe drought stress (20-day natural drought), compared to control, GB03, WRA and GB03+WRA all significantly improved shoot fresh weight, dry weight, relative water content (RWC) and chlorophyll content and decreased leaf relative electric conductivity (REC) and leaf malondialdehyde (MDA) content; GB03+WRA significantly enhanced chlorophyll content compared to control and other two treatments. Seven days after rewatering, GB03, WRA and GB03+WRA all significantly enhanced plant survival rate, biomass, RWC and maintained chlorophyll content compared to control; GB03+WRA significantly enhanced plant survival rate, biomass and chlorophyll content compared to control and other two treatments. The results established that GB03 together with water retaining agent promotes ryegrass growth under drought conditions by improving survival rate and maintaining chlorophyll content. PMID:29232909

Synergistic Effects of Bacillus amyloliquefaciens (GB03) and Water Retaining Agent on Drought Tolerance of Perennial Ryegrass.

PubMed

Su, An-Yu; Niu, Shu-Qi; Liu, Yuan-Zheng; He, Ao-Lei; Zhao, Qi; Paré, Paul W; Li, Meng-Fei; Han, Qing-Qing; Ali Khan, Sardar; Zhang, Jin-Lin

2017-12-11

Water retaining agent (WRA) is widely used for soil erosion control and agricultural water saving. Here, we evaluated the effects of the combination of beneficial soil bacterium Bacillus amyloliquefaciens strain GB03 and WRA (the compound is super absorbent hydrogels) on drought tolerance of perennial ryegrass ( Lolium perenne L.). Seedlings were subjected to natural drought for maximum 20 days by stopping watering and then rewatered for seven days. Plant survival rate, biomass, photosynthesis, water status and leaf cell membrane integrity were measured. The results showed that under severe drought stress (20-day natural drought), compared to control, GB03, WRA and GB03+WRA all significantly improved shoot fresh weight, dry weight, relative water content (RWC) and chlorophyll content and decreased leaf relative electric conductivity (REC) and leaf malondialdehyde (MDA) content; GB03+WRA significantly enhanced chlorophyll content compared to control and other two treatments. Seven days after rewatering, GB03, WRA and GB03+WRA all significantly enhanced plant survival rate, biomass, RWC and maintained chlorophyll content compared to control; GB03+WRA significantly enhanced plant survival rate, biomass and chlorophyll content compared to control and other two treatments. The results established that GB03 together with water retaining agent promotes ryegrass growth under drought conditions by improving survival rate and maintaining chlorophyll content.

Fluctuations in coral health of four common inshore reef corals in response to seasonal and anthropogenic changes in water quality.

PubMed

Browne, Nicola K; Tay, Jason K L; Low, Jeffrey; Larson, Ole; Todd, Peter A

2015-04-01

Environmental drivers of coral condition (maximum quantum yield, symbiont density, chlorophyll a content and coral skeletal growth rates) were assessed in the equatorial inshore coastal waters of Singapore, where the amplitude of seasonal variation is low, but anthropogenic influence is relatively high. Water quality variables (sediments, nutrients, trace metals, temperature, light) explained between 52 and 83% of the variation in coral condition, with sediments and light availability as key drivers of foliose corals (Merulina ampliata, Pachyseris speciosa), and temperature exerting a greater influence on a branching coral (Pocillopora damicornis). Seasonal reductions in water quality led to high chlorophyll a concentrations and maximum quantum yields in corals, but low growth rates. These marginal coral communities are potentially vulnerable to climate change, hence, we propose water quality thresholds for coral growth with the aim of mitigating both local and global environmental impacts. Copyright © 2015 Elsevier Ltd. All rights reserved.

High Winds and the Vertical Structure of Chl-a in the Southern Ocean: Insights from Remote Sensing and Novel in situ Sensors

NASA Astrophysics Data System (ADS)

Carranza, M. M.; Gille, S. T.; Franks, P. J. S.; Johnson, K. S.; Girton, J. B.

2016-02-01

The Southern Ocean is under the influence of strong atmospheric synoptic activity and contains some of the oceans deepest mixed layers. Deep mixed layers can transport phytoplankton below the euphotic zone, and phytoplankton growth is hypothesized to be co-limited by iron and light. Atmospheric forcing drives changes in the mixed-layer depth (MLD) that influence light levels and nutrient input to the euphotic zone. In summer, when the MLD is shallow and close to the euphotic depth, high satellite Chl-a correlate with high winds, consistent with wind-driven entrainment that can potentially increase nutrient concentrations in the euphotic zone. However, correlations between Chl-a and diurnal winds are largest at zero time lag. High winds can inject nutrients on short timescales (< 1 day), but in situ incubation experiments after iron addition indicate phytoplankton growth on slightly longer timescales (> 3-4 days), suggesting that the correlations are not a result of growth. High winds can also entrain Chl-a from a subsurface Chl-a maximum. Novel bio-optical sensors mounted on elephant seals and autonomous floats allow us to examine the vertical structure of Chl-a in the Southern Ocean. In this study, we investigate the occurrence of subsurface Chl-a maxima. We find that surface Chl-a is a relatively good proxy for depth-integrated Chl-a within the euphotic zone but gives an inadequate representation of biomass within the mixed layer, particularly in the summer. Subsurface Chl-a maxima are not uncommon and may occur in all seasons. Chl-a maxima that correlate with particle backscattering in summer and fall are found near the base of the mixed layer, closer to the nutrient maximum than the light maximum, suggesting that nutrient limitation (i.e., essentially iron) can play a greater role than light limitation in governing productivity, and that high winds potentially entrain a subsurface Chl-a maximum into the summer mixed layer.

Comparison between fluorimetry and oximetry techniques to measure photosynthesis in the diatom Skeletonema costatum cultivated under simulated seasonal conditions.

PubMed

Lefebvre, Sébastien; Mouget, Jean-Luc; Loret, Pascale; Rosa, Philippe; Tremblin, Gérard

2007-02-01

This study reports comparison of two techniques measuring photosynthesis in the ubiquitous diatom Skeletonema costatum, i.e., the classical oximetry and the recent modulated fluorimetry. Microalgae in semi-continuous cultures were exposed to five different environmental conditions simulating a seasonal effect with co-varying temperature, photoperiod and incident light. Photosynthesis was assessed by gross rate of oxygen evolution (P(B)) and the electron transport rate (ETR) measurements. The two techniques were linearly related within seasonal treatments along the course of the P/E curves. The light saturation intensity parameters (Ek and Ek(ETR)), and the maximum electron transport rate increased significantly with the progression of the season while the maximum light utilization efficiency for ETR (alpha(ETR)) was constant. By contrast, the maximum gross oxygen photosynthetic capacity (Pmax(B)) and the maximum light utilization efficiency for P(B) (alpha(B)) increased from December to May treatment but decreased from May to July treatment. Both techniques showed clear photoacclimation in microalgae with the progression of the season, as illustrated by changes in photosynthetic parameters. The relationship between the two techniques changed when high temperature, photoperiod and incident light were combined, possibly due to an overestimation of the PAR--averaged chlorophyll-specific absorption cross-section. Despite this change, our results illustrate the strong suitability of in vivo chlorophyll fluorimetry to estimate primary production in the field.

Effect of CO2 Concentration on Growth and Biochemical Composition of Newly Isolated Indigenous Microalga Scenedesmus bajacalifornicus BBKLP-07.

PubMed

Patil, Lakkanagouda; Kaliwal, Basappa

2017-05-01

Photosynthetic mitigation of CO 2 through microalgae is gaining great importance due to its higher photosynthetic ability compared to plants, and the biomass can be commercially exploited for various applications. CO 2 fixation capability of the newly isolated freshwater microalgae Scenedesmus bajacalifornicus BBKLP-07 was investigated using a 1-l photobioreactor. The cultivation was carried at varying concentration of CO 2 ranging from 5 to 25%, and the temperature and light intensities were kept constant. A maximum CO 2 fixation rate was observed at 15% CO 2 concentration. Characteristic growth parameters such as biomass productivity, specific growth rate, and maximum biomass yield, and biochemical parameters such as carbohydrate, protein, lipid, chlorophyll, and carotenoid were determined and discussed. It was observed that the effect of CO 2 concentration on growth and biochemical composition was quite significant. The maximum biomass productivity was 0.061 ± 0.0007 g/l/day, and the rate of CO 2 fixation was 0.12 ± 0.002 g/l/day at 15% CO 2 concentration. The carbohydrate and lipid content were maximum at 25% CO 2 with 26.19 and 25.81% dry cell weight whereas protein, chlorophyll, and carotenoid contents were 32.89% dry cell weight, 25.07 μg/ml and 6.15 μg/ml respectively at 15% CO 2 concentration.

Algae Tile Data: 2004-2007, BPA-51; Preliminary Report, October 28, 2008.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holderman, Charles

Multiple files containing 2004 through 2007 Tile Chlorophyll data for the Kootenai River sites designated as: KR1, KR2, KR3, KR4 (Downriver) and KR6, KR7, KR9, KR9.1, KR10, KR11, KR12, KR13, KR14 (Upriver) were received by SCS. For a complete description of the sites covered, please refer to http://ktoi.scsnetw.com. To maintain consistency with the previous SCS algae reports, all analyses were carried out separately for the Upriver and Downriver categories, as defined in the aforementioned paragraph. The Upriver designation, however, now includes three additional sites, KR11, KR12, and the nutrient addition site, KR9.1. Summary statistics and information on the four responses,more » chlorophyll a, chlorophyll a Accrual Rate, Total Chlorophyll, and Total Chlorophyll Accrual Rate are presented in Print Out 2. Computations were carried out separately for each river position (Upriver and Downriver) and year. For example, the Downriver position in 2004 showed an average Chlorophyll a level of 25.5 mg with a standard deviation of 21.4 and minimum and maximum values of 3.1 and 196 mg, respectively. The Upriver data in 2004 showed a lower overall average chlorophyll a level at 2.23 mg with a lower standard deviation (3.6) and minimum and maximum values of (0.13 and 28.7, respectively). A more comprehensive summary of each variable and position is given in Print Out 3. This lists the information above as well as other summary information such as the variance, standard error, various percentiles and extreme values. Using the 2004 Downriver Chlorophyll a as an example again, the variance of this data was 459.3 and the standard error of the mean was 1.55. The median value or 50th percentile was 21.3, meaning 50% of the data fell above and below this value. It should be noted that this value is somewhat different than the mean of 25.5. This is an indication that the frequency distribution of the data is not symmetrical (skewed). The skewness statistic, listed as part of the first section of each analysis, quantifies this. In a symmetric distribution, such as a Normal distribution, the skewness value would be 0. The tile chlorophyll data, however, shows larger values. Chlorophyll a, in the 2004 Downriver example, has a skewness statistic of 3.54, which is quite high. In the last section of the summary analysis, the stem and leaf plot graphically demonstrates the asymmetry, showing most of the data centered around 25 with a large value at 196. The final plot is referred to as a normal probability plot and graphically compares the data to a theoretical normal distribution. For chlorophyll a, the data (asterisks) deviate substantially from the theoretical normal distribution (diagonal reference line of pluses), indicating that the data is non-normal. Other response variables in both the Downriver and Upriver categories also indicated skewed distributions. Because the sample size and mean comparison procedures below require symmetrical, normally distributed data, each response in the data set was logarithmically transformed. The logarithmic transformation, in this case, can help mitigate skewness problems. The summary statistics for the four transformed responses (log-ChlorA, log-TotChlor, and log-accrual ) are given in Print Out 4. For the 2004 Downriver Chlorophyll a data, the logarithmic transformation reduced the skewness value to -0.36 and produced a more bell-shaped symmetric frequency distribution. Similar improvements are shown for the remaining variables and river categories. Hence, all subsequent analyses given below are based on logarithmic transformations of the original responses.« less

Developing a trend prediction model of subsurface damage for fixed-abrasive grinding of optics by cup wheels.

PubMed

Dong, Zhichao; Cheng, Haobo

2016-11-10

Fixed-abrasive grinding by cup wheels plays an important role in the production of precision optics. During cup wheel grinding, we strive for a large removal rate while maintaining fine integrity on the surface and subsurface layers (academically recognized as surface roughness and subsurface damage, respectively). This study develops a theoretical model used to predict the trend of subsurface damage of optics (with respect to various grinding parameters) in fixed-abrasive grinding by cup wheels. It is derived from the maximum undeformed chip thickness model, and it successfully correlates the pivotal parameters of cup wheel grinding with the subsurface damage depth. The efficiency of this model is then demonstrated by a set of experiments performed on a cup wheel grinding machine. In these experiments, the characteristics of subsurface damage are inspected by a wedge-polishing plus microscopic inspection method, revealing that the subsurface damage induced in cup wheel grinding is composed of craterlike morphologies and slender cracks, with depth ranging from ∼6.2 to ∼13.2  μm under the specified grinding parameters. With the help of the proposed model, an optimized grinding strategy is suggested for realizing fine subsurface integrity as well as high removal rate, which can alleviate the workload of subsequent lapping and polishing.

Properties of the water column and bottom derived from Airborne Visible Infrared Imaging Spectrometer (AVIRIS) data

NASA Astrophysics Data System (ADS)

Lee, Zhongping; Carder, Kendall L.; Chen, Robert F.; Peacock, Thomas G.

2001-06-01

Using Airborne Visible Infrared Imaging Spectrometer (AVIRIS) data as an example, we show in this study that the properties of the water column and bottom of a large, shallow area can be adequately retrieved using a model-driven optimization technique. The simultaneously derived properties include bottom depth, bottom albedo, and water absorption and backscattering coefficients, which in turn could be used to derive concentrations of chlorophyll, dissolved organic matter, and suspended sediments in the water column. The derived bottom depths were compared with a bathymetry chart and a boat survey and were found to agree very well. Also, the derived bottom albedo image shows clear spatial patterns, with end-members consistent with sand and seagrass. The image of absorption and backscattering coefficients indicates that the water is quite horizontally mixed. Without bottom corrections, chlorophyll a retrievals were ˜50 mg m-3, while the retrievals after bottom corrections were tenfold less, approximating real values. These results suggest that the model and approach used work very well for the retrieval of subsurface properties of shallow-water environments even for rather turbid environments like Tampa Bay, Florida.

[Semi-analysis algorithm to retrieve pigment concentrations in the red tide area of the East China Sea].

PubMed

Qiu, Zhong-Feng; Xi, Hong-Yan; He, Yi-Jun; Chen, Jay-Chung; Jian, Wei-Jun

2006-08-01

For the purpose of detecting and forecasting research of red tides to reduce the loss, a semi-analytic algorithm to retrieve chlorophyll-a concentrations was established in the area where red tides often brought out, according to the data collected during the red tides cruise in the East China Sea in April 2002. In the algorithm, empirical equations were made based on the coefficients from the in-situ data, including the optical properties of the research area. The in-situ data were used to validate the algorithm. The discrepancy of chlorophyll-a absorption coefficients and concentrations are mainly located in the region of 30%. The root mean deviation of the chlorophyll-a concentrations between the observed and the calculated is 0.24, the maximum relative deviation 40.93%, the mean relative deviation 18.83% and the correlation coefficient 0.83. The results show that the precision of the algorithm is high and the algorithm is fit for the research area.

Enhancement of phytoplankton chlorophyll by submesoscale frontal dynamics in the North Pacific Subtropical Gyre.

PubMed

Liu, Xiao; Levine, Naomi M

2016-02-28

Subtropical gyres contribute significantly to global ocean productivity. As the climate warms, the strength of these gyres as a biological carbon pump is predicted to diminish due to increased stratification and depleted surface nutrients. We present results suggesting that the impact of submesoscale physics on phytoplankton in the oligotrophic ocean is substantial and may either compensate or exacerbate future changes in carbon cycling. A new statistical tool was developed to quantify surface patchiness from sea surface temperatures. Chlorophyll concentrations in the North Pacific Subtropical Gyre were shown to be enhanced by submesoscale frontal dynamics with an average increase of 38% (maximum of 83%) during late winter. The magnitude of this enhancement is comparable to the observed decline in chlorophyll due to a warming of ~1.1°C. These results highlight the need for an improved understanding of fine-scale physical variability in order to predict the response of marine ecosystems to projected climate changes.

Enhancement of phytoplankton chlorophyll by submesoscale frontal dynamics in the North Pacific Subtropical Gyre

NASA Astrophysics Data System (ADS)

Liu, Xiao; Levine, Naomi M.

2016-02-01

Subtropical gyres contribute significantly to global ocean productivity. As the climate warms, the strength of these gyres as a biological carbon pump is predicted to diminish due to increased stratification and depleted surface nutrients. We present results suggesting that the impact of submesoscale physics on phytoplankton in the oligotrophic ocean is substantial and may either compensate or exacerbate future changes in carbon cycling. A new statistical tool was developed to quantify surface patchiness from sea surface temperatures. Chlorophyll concentrations in the North Pacific Subtropical Gyre were shown to be enhanced by submesoscale frontal dynamics with an average increase of 38% (maximum of 83%) during late winter. The magnitude of this enhancement is comparable to the observed decline in chlorophyll due to a warming of ~1.1°C. These results highlight the need for an improved understanding of fine-scale physical variability in order to predict the response of marine ecosystems to projected climate changes.

Biological consequences of a recurrent eddy off Point Conception, California

NASA Technical Reports Server (NTRS)

Haury, Loren R.; Simpson, James J.; Pelaez, Jose; Wisenhahn, David; Koblinsky, Chester J.

1986-01-01

The biological effects on three different time scales (100-day mesoscale, annual, and several-year) of a mesoscale anticyclonic eddy consistently found in shipboard surveys and satellite-sensed data several hundred kilometers southwest of Point Conception, CA, are described. A detailed shipboard study of the eddy in January 1981 found a complex system of fronts in surface chlorophyll at the northern edge of the eddy; microplankton and zooplankton distributions were strongly affected by entrainment processes at the surface and, apparently, at depth. Concurrent satellite coastal zone color scanner ocean color images show agreement with the general surface characteristics of the eddy chlorophyll field but do not reflect features deeper than about 25 m, including the contribution of the deep chlorophyll maximum to the integrated chlorophyll values. Satellite data for the period October 1980 through October 1981 and shipboard data from California Cooperative Oceanic Fisheries Investigations (CalCOFI) for December 1980 to July 1981 show the continued presence of the eddy in the sea surface temperature and color field and in the distributions of surface chlorophyll and zooplankton displacement volume. A review of the CalCOFI survey results from 1949 to the present time demonstrates the recurrent nature of the eddy system on a year-to-year basis. The eddy system appears to have a significant effect on the distribution of both oceanic and nearshore organisms. Offshore transport of coastal species occurs in the form of large entrained plumes or filaments.

Enhancement of lipase catalyzed-fatty acid methyl esters production from waste activated bleaching earth by nullification of lipase inhibitors.

PubMed

Dwiarti, Lies; Ali, Ehsan; Park, Enoch Y

2010-01-01

This study sought to identify inhibitory factors of lipase catalyzed-fatty acid methyl esters (FAME) production from waste activated bleaching earth (wABE). During the vegetable oil refinery process, activated bleaching earth (ABE) is used for removing the impure compounds, but adsorbs vegetable oil up to 35-40% as on a weight basis, and then the wABE is discarded as waste material. The impurities were extracted from the wABE with methanol and evaluated by infra-red (IR) spectroscopy, which revealed that some were chlorophyll-plant pigments. The chlorophylls inhibited the lipase during FAME conversion from wABE. The inhibition by a mixture of chlorophyll a and b was found to be competitive. The inhibition of the enzymatic hydrolysis of waste vegetable oil contained in wABE by chlorophyll a alone was competitive, while the inhibition by chlorophyll b alone was non-competitive. Furthermore, the addition of a small amount of alkali nullified this inhibitory effect and accelerated the FAME production rate. When 0.9% KOH (w/w wABE) was added to the transesterification reaction with only 0.05% lipase (w/w wABE), the maximum FAME production rate improved 120-fold, as compared to that without the addition of KOH. The alkali-combined lipase significantly enhanced the FAME production rate from wABE, in spite of the presence of the plant pigments, and even when a lower amount of lipase was used as a catalyst.

An Empirical Approach to Ocean Color Data: Reducing Bias and the Need for Post-Launch Radiometric Re-Calibration

NASA Technical Reports Server (NTRS)

Gregg, Watson W.; Casey, Nancy W.; O'Reilly, John E.; Esaias, Wayne E.

2009-01-01

A new empirical approach is developed for ocean color remote sensing. Called the Empirical Satellite Radiance-In situ Data (ESRID) algorithm, the approach uses relationships between satellite water-leaving radiances and in situ data after full processing, i.e., at Level-3, to improve estimates of surface variables while relaxing requirements on post-launch radiometric re-calibration. The approach is evaluated using SeaWiFS chlorophyll, which is the longest time series of the most widely used ocean color geophysical product. The results suggest that ESRID 1) drastically reduces the bias of ocean chlorophyll, most impressively in coastal regions, 2) modestly improves the uncertainty, and 3) reduces the sensitivity of global annual median chlorophyll to changes in radiometric re-calibration. Simulated calibration errors of 1% or less produce small changes in global median chlorophyll (less than 2.7%). In contrast, the standard NASA algorithm set is highly sensitive to radiometric calibration: similar 1% calibration errors produce changes in global median chlorophyll up to nearly 25%. We show that 0.1% radiometric calibration error (about 1% in water-leaving radiance) is needed to prevent radiometric calibration errors from changing global annual median chlorophyll more than the maximum interannual variability observed in the SeaWiFS 9-year record (+/- 3%), using the standard method. This is much more stringent than the goal for SeaWiFS of 5% uncertainty for water leaving radiance. The results suggest ocean color programs might consider less emphasis of expensive efforts to improve post-launch radiometric re-calibration in favor of increased efforts to characterize in situ observations of ocean surface geophysical products. Although the results here are focused on chlorophyll, in principle the approach described by ESRID can be applied to any surface variable potentially observable by visible remote sensing.

Recovery of photosynthesis in 1-year-old needles of unfertilized and fertilized Norway spruce (Picea abies (L.) Karst.) during spring.

PubMed

Strand, M; Lundmark, T

1995-03-01

Photosynthetic O(2) evolution and chlorophyll a fluorescence were measured in 1-year-old needles of unfertilized and fertilized trees of Norway spruce (Picea abies (L.) Karst.) during recovery of photosynthesis from winter inhibition in northern Sweden. Measurements were made under laboratory conditions at 20 degrees C. In general, the CO(2)-saturated rate of O(2) evolution was higher in needles of fertilized trees than in needles of unfertilized trees over a wide range of incident photon flux densities. Furthermore, the maximum photochemical efficiency of photosystem (PS) II, as indicated by the ratio of variable to maximum fluorescence (F(V)/F(M)) was higher in needles of fertilized trees than in needles of unfertilized trees. The largest differences in F(V)/F(M) between the two treatments occurred before the main recovery of photosynthesis from winter inhibition in late May. The rate of O(2) evolution was higher in needles of north-facing branches than in needles of south-facing branches in the middle of May. Simultaneous measurements of O(2) exchange and chlorophyll fluorescence indicated that differences in the rate of O(2) evolution between the two treatments were paralleled by differences in the rate of PS II electron transport determined by chlorophyll fluorescence. We suggest that, during recovery of photosynthesis from winter inhibition, the balance between carbon assimilation and PS II electron transport was maintained largely by adjustments in the nonphotochemical dissipation of excitation energy within PS II.

Water masses in the Humboldt Current System: Properties, distribution, and the nitrate deficit as a chemical water mass tracer for Equatorial Subsurface Water off Chile

NASA Astrophysics Data System (ADS)

Silva, Nelson; Rojas, Nora; Fedele, Aldo

2009-07-01

Three sections are used to analyze the physical and chemical characteristics of the water masses in the eastern South Pacific and their distributions. Oceanographic data were taken from the SCORPIO (May-June 1967), PIQUERO (May-June 1969), and KRILL (June 1974) cruises. Vertical sections of temperature, salinity, σ θ, dissolved oxygen, nitrate, nitrite, phosphate, and silicate were used to analyze the water column structure. Five water masses were identified in the zone through T- S diagrams: Subantarctic Water, Subtropical Water, Equatorial Subsurface Water, Antarctic Intermediate Water, and Pacific Deep Water. Their proportions in the sea water mixture are calculated using the mixing triangle method. Vertical sections were used to describe the geographical distributions of the water mass cores in the upper 1500 m. Several characteristic oceanographic features in the study area were analyzed: the shallow salinity minimum displacement towards the equator, the equatorial subsurface salinity maximum associated with a dissolved oxygen minimum zone and a high nutrient content displacement towards the south, and the equatorward intermediate Antarctic salinity minimum associated with a dissolved oxygen maximum. The nitrate deficit generated in the denitrification area off Peru and northern Chile is proposed as a conservative chemical tracer for the Equatorial Subsurface Waters off the coast of Chile, south of 25°S.

Combining Methods to Describe Important Marine Habitats for Top Predators: Application to Identify Biological Hotspots in Tropical Waters.

PubMed

Thiers, Laurie; Louzao, Maite; Ridoux, Vincent; Le Corre, Matthieu; Jaquemet, Sébastien; Weimerskirch, Henri

2014-01-01

In tropical waters resources are usually scarce and patchy, and predatory species generally show specific adaptations for foraging. Tropical seabirds often forage in association with sub-surface predators that create feeding opportunities by bringing prey close to the surface, and the birds often aggregate in large multispecific flocks. Here we hypothesize that frigatebirds, a tropical seabird adapted to foraging with low energetic costs, could be a good predictor of the distribution of their associated predatory species, including other seabirds (e.g. boobies, terns) and subsurface predators (e.g., dolphins, tunas). To test this hypothesis, we compared distribution patterns of marine predators in the Mozambique Channel based on a long-term dataset of both vessel- and aerial surveys, as well as tracking data of frigatebirds. By developing species distribution models (SDMs), we identified key marine areas for tropical predators in relation to contemporaneous oceanographic features to investigate multi-species spatial overlap areas and identify predator hotspots in the Mozambique Channel. SDMs reasonably matched observed patterns and both static (e.g. bathymetry) and dynamic (e.g. Chlorophyll a concentration and sea surface temperature) factors were important explaining predator distribution patterns. We found that the distribution of frigatebirds included the distributions of the associated species. The central part of the channel appeared to be the best habitat for the four groups of species considered in this study (frigatebirds, brown terns, boobies and sub-surface predators).

Subsurface low dissolved oxygen occurred at fresh- and saline-water intersection of the Pearl River estuary during the summer period.

PubMed

Li, Gang; Liu, Jiaxing; Diao, Zenghui; Jiang, Xin; Li, Jiajun; Ke, Zhixin; Shen, Pingping; Ren, Lijuan; Huang, Liangmin; Tan, Yehui

2018-01-01

Estuarine oxygen depletion is one of the worldwide problems, which is caused by the freshwater-input-derived severe stratification and high nutrients loading. In this study we presented the horizontal and vertical distributions of dissolved oxygen (DO) in the Pearl River estuary, together with temperature, salinity, chlorophyll a concentration and heterotrophic bacteria abundance obtained from two cruises during the summer (wet) and winter (dry) periods of 2015. In surface water, the DO level in the summer period was lower and varied greater, as compared to the winter period. The DO remained unsaturated in the summer period if salinity is <12 and saturated if salinity is >12; while in the winter period it remained saturated throughout the estuary. In subsurface (>5m) water, the DO level varied from 0.71 to 6.65mgL -1 and from 6.58 to 8.20mgL -1 in the summer and winter periods, respectively. Particularly, we observed an area of ~1500km 2 low DO zone in the subsurface water with a threshold of 4mgDOL -1 during this summer period, that located at the fresh- and saline-water intersection where is characterized with severe stratification and high heterotrophic bacteria abundance. In addition, our results indicate that spatial DO variability in surface water was contributed differently by biological and physio-chemical variables in the summer and winter periods, respectively. Copyright © 2017 Elsevier Ltd. All rights reserved.

The timing and the magnitude of spring phytoplankton blooms and their relationship with physical forcing in the central Yellow Sea in 2009

NASA Astrophysics Data System (ADS)

Zhou, Feng; Xuan, Jiliang; Huang, Daji; Liu, Chenggang; Sun, Jun

2013-12-01

The development of phytoplankton bloom and its association with physical forcing is examined through an interdisciplinary field-work conducted in the vicinity of the central trough of the southern Yellow Sea during March-April 2009, with the aid of a surface Lagrangian drifter deployed at the bloom site. Bloom patches were detected using an empirical value and two of them were traced by the drifter for a period of several days respectively. Both of them appears as thin-layer subsurface chlorophyll a maximum (SCM) throughout the tracing, although their dominant phytoplankton species are not identical at all. The magnitude as well as the onset of these two blooms is different from each other, but both found to be relevant to local oceanic and meteorological conditions. Both of them demonstrate that the changes in the stability of hydrographical structure, especially at layers around the SCM, take a substantial role in triggering or terminating the blooming processes. Those changes in meteorological conditions, like wind speed and directions, solar radiation, are short and cause daily or synoptic scale variations in phytoplankton concentrations, but the frequency of northerly wind events predating the bloom season has a positive effect on the occurrence of spring blooms. The horizontal advection is another contributing factor indicated by the drifter which accounts for the bloom extinction at the station B20. In addition, due to the weak orbital horizontal movement, the bloom above the central trough persists longer and larger.

Primary production estimates from recordings of solar-stimulated fluorescence in the equatorial Pacific at 150 deg W

NASA Technical Reports Server (NTRS)

Stegmann, P. M.; Lewis, M. R.; Davis, C. O.; Cullen, J. J.

1992-01-01

Biological, optical, and hydrographical data were collected on the WEC88 cruise along 150 deg W and during a 6-day time-series station on the equator during February/March 1988. This area was characterized by a subsurface chlorophyll maximum (SCM), located at 50-70 m depth at the equator and descending down to 120-125 m at the north and south end of the transect. Highest primary production rates were near-surface and confined to the equatorial region and stations between 7 deg and 11 deg N. To determine the relationship between solar-stimulated fluorescence (centered at 683 nm wavelength) and primary production, a production-fluorescence model based on phytoplankton physiology and marine optics is described. Results of model calculations predict that there is a linear relation between production and fluorescence. A comparison between morning and midday measurements of the production-fluorescence relation showed that there was some difference between the two, whereas evening measurements, on the other hand, were distinctly different from the morning/midday ones. This seems to suggest that diurnal variations contribute significantly to variability in the quantum yield of photochemical processes. The ratio of the quantum yield of photosynthesis to the quantum yield of fluorescence ranged between 0.24 and 0.44 molC/Ein for all stations. The highest value for this ratio occurred at the equatorial stations, indicating that latitudinal variability could have an effect on the production-fluorescence relation.

Oceanographic structure drives the assembly processes of microbial eukaryotic communities.

PubMed

Monier, Adam; Comte, Jérôme; Babin, Marcel; Forest, Alexandre; Matsuoka, Atsushi; Lovejoy, Connie

2015-03-17

Arctic Ocean microbial eukaryote phytoplankton form subsurface chlorophyll maximum (SCM), where much of the annual summer production occurs. This SCM is particularly persistent in the Western Arctic Ocean, which is strongly salinity stratified. The recent loss of multiyear sea ice and increased particulate-rich river discharge in the Arctic Ocean results in a greater volume of fresher water that may displace nutrient-rich saltier waters to deeper depths and decrease light penetration in areas affected by river discharge. Here, we surveyed microbial eukaryotic assemblages in the surface waters, and within and below the SCM. In most samples, we detected the pronounced SCM that usually occurs at the interface of the upper mixed layer and Pacific Summer Water (PSW). Poorly developed SCM was seen under two conditions, one above PSW and associated with a downwelling eddy, and the second in a region influenced by the Mackenzie River plume. Four phylogenetically distinct communities were identified: surface, pronounced SCM, weak SCM and a deeper community just below the SCM. Distance-decay relationships and phylogenetic structure suggested distinct ecological processes operating within these communities. In the pronounced SCM, picophytoplanktons were prevalent and community assembly was attributed to water mass history. In contrast, environmental filtering impacted the composition of the weak SCM communities, where heterotrophic Picozoa were more numerous. These results imply that displacement of Pacific waters to greater depth and increased terrigenous input may act as a control on SCM development and result in lower net summer primary production with a more heterotroph dominated eukaryotic microbial community.

Biochemical changes in some deciduous tree species around Talcher thermal power station, Odisha, India.

PubMed

Nayak, Rekha; Biswal, Debasis; Sett, Rupnarayan

2013-05-01

The present study was conducted to evaluate biochemical traits in leaves to assess the air pollution impact on plants caused by thermal power plant emissions. Ten species of deciduous trees were selected from study sites in different seasons. pH, chlorophyll, phenols, total soluble sugar content and proline content in fresh leaf was analyzed. The leaf wash pH content reveals moderately acidic (4.5-5.0) to highly acidic (3.5-4.5) range. Significant differences (p < 0.01) were observed in chlorophyll content according to the seasons and sites. Maximum reduction in chlorophyll was noticed at 2.5 km and 5.0 km west from the power plant. Greater reduction in chloropohyll 'b' than chlorophyll 'a' was noticed. An increase in total soluble sugars and phenols was observed at sites closer to thermal power plant in comparison to control. Highest concentration of total phenols was found in summer season in Dalbergia sissoo (1.52%), Butea monosperma (1.12%), Mangifera indica (1.2%), Tectona grandis (1.26%) and Acacia leucophloea (1.16%) at 2.5 km north from the source. Highest concentration of soluble sugar was found in Dalbergia sissoo (7.75%) during winter season. There was about 10-20 fold increase in proline content of leaves in comparison to the control.

The vertical attenuation of light in Charlotte Harbor, a shallow, subtropical estuary, south-western Florida

USGS Publications Warehouse

McPherson, B.F.; Miller, R.L.

1987-01-01

The relative contribution of different components to the attenuation of photosynthetically active radiation was determined in the Charlotte Harbor estuarine system based on laboratory and in situ measurements. Agreement between laboratory and in situ measurements of the attenuation coefficient (kt) was good (r2 = 0??92). For all in situ measurements (n = 100), suspended, non-chlorophyll matter accounted for an average of 72% of kt, dissolved matter accounted for 21%, suspended chlorophyll for 4%, and water for the remaining 3%. For individual determinations, suspended non-chlorophyll matter, dissolved matter, suspended chlorophyll, and water, each accounted for as much as 99%, 79%, 21%, and 18% of kt. Attenuation by suspended matter was greatest near the mouth of the northern tidal rivers and was variable over the rest of the estuarine system. Attenuation by dissolved matter was greatest in the brackish tidal rivers and decreased with increasing salinity. Attenuation due to dissolved matter was positively correlated with water color. The source of the color was basin runoff. Wavelength transmittance changed along the salinity gradient. Maximum transmittance shifted from 500 to 600 nm in gulf waters to 650 to 700 nm in colored, brackish waters. Dissolved matter was primarily responsible for the large attenuation at short wavelengths (400-500 nm). ?? 1987.

Reproductive patterns in demersal crustaceans from the upper boundary of the OMZ off north-central Chile

NASA Astrophysics Data System (ADS)

Gallardo, María de los Ángeles; González López, Andrés E.; Ramos, Marcel; Mujica, Armando; Muñoz, Praxedes; Sellanes, Javier; Yannicelli, Beatriz

2017-06-01

Pleuroncodes monodon (Crustacea: Munididae) supports one of the main trawling fisheries over the continental shelf off Chile between 25°S and 37°S within the upper boundary of the oxygen minimum zone (OMZ). Although the reproductive cycle of P. monodon has been described, the relationship between this key biological process and the variability of the OMZ has not been comprehensibly addressed neither for P. monodon nor for other OMZ resident species. In this study a set of 14 quasi-monthly oceanographic cruises carried out between June 2010 and November 2011 were conducted over the continental shelf off Coquimbo (30°S) to investigate the temporal variability of: i) dissolved oxygen concentration, temperature and chlorophyll-a at relevant depths ii) the presence and proportion of occurrence of P. monodon ovigerous females and juveniles from benthic trawls; iii) the presence of different stage larvae in the plankton, and iv) similar biological data for other species from the OMZ and shallower depths crustaceans. During summer months oxygen levels and bottom temperature were lower than in winter, while chlorophyll-a concentration was maximum in summer coinciding with an active (but not maximum) upwelling season. P. monodon maximum egg carrying occurred in winter during periods of increased oxygenation. Egg carrying females were never found at depths where oxygen concentration was below 0.5 ml L-1, while over 50% of the autumn and spring cohorts of juveniles occurred at oxygen concentrations below that level. The depth range occupied by ovigerous females was more restricted than the rest of the population and their depth of occurrence followed the variability of the upper OMZ. The larval release period of OMZ resident species extends over late winter and spring, and its main peak precedes that of coastal species (spring) and the spring-summer chlorophyll-a maximum. We propose that for OMZ resident species, brood carrying during warmer and more oxygenated conditions in the adult benthic environment, might favor embryonic development, so OMZ seasonal variability could be acting as a selective pressure to synchronize reproductive periods.

Growth, ammonium metabolism, and photosynthetic properties of Ulva australis (Chlorophyta) under decreasing pH and ammonium enrichment

PubMed Central

Fernandez, Pamela A.; Leal, Pablo P.; Noisette, Fanny; McGraw, Christina M.; Revill, Andrew T.; Hurd, Catriona L.; Kübler, Janet E.

2017-01-01

The responses of macroalgae to ocean acidification could be altered by availability of macronutrients, such as ammonium (NH4+). This study determined how the opportunistic macroalga, Ulva australis responded to simultaneous changes in decreasing pH and NH4+ enrichment. This was investigated in a week-long growth experiment across a range of predicted future pHs with ambient and enriched NH4+ treatments followed by measurements of relative growth rates (RGR), NH4+ uptake rates and pools, total chlorophyll, and tissue carbon and nitrogen content. Rapid light curves (RLCs) were used to measure the maximum relative electron transport rate (rETRmax) and maximum quantum yield of photosystem II (PSII) photochemistry (Fv/Fm). Photosynthetic capacity was derived from the RLCs and included the efficiency of light harvesting (α), slope of photoinhibition (β), and the light saturation point (Ek). The results showed that NH4+ enrichment did not modify the effects of pH on RGRs, NH4+ uptake rates and pools, total chlorophyll, rETRmax, α, β, Fv/Fm, tissue C and N, and the C:N ratio. However, Ek was differentially affected by pH under different NH4+ treatments. Ek increased with decreasing pH in the ambient NH4+ treatment, but not in the enriched NH4+ treatment. NH4+ enrichment increased RGRs, NH4+ pools, total chlorophyll, rETRmax, α, β, Fv/Fm, and tissue N, and decreased NH4+ uptake rates and the C:N ratio. Decreased pH increased total chlorophyll content, rETRmax, Fv/Fm, and tissue N content, and decreased the C:N ratio. Therefore, the results indicate that U. australis growth is increased with NH4+ enrichment and not with decreasing pH. While decreasing pH influenced the carbon and nitrogen metabolisms of U. australis, it did not result in changes in growth. PMID:29176815

Abundance of the iron containing biomolecule, heme b, during the progression of a spring phytoplankton bloom in a mesocosm experiment

PubMed Central

Bellworthy, Jessica; Esposito, Mario; Achterberg, Eric P.

2017-01-01

Concentrations of heme b were determined in a mesocosm experiment situated in Gullmar Fjord off Sweden. The mesocosm experiment lasted for ca. one hundred days and was characterised by the growth of a primary nutrient replete and a secondary nutrient deplete phytoplankton bloom. Heme b varied between 40 ± 10 pmol L-1 in the prebloom period up to a maximum of 700 ± 400 pmol L-1 just prior to the time of the primary chlorophyll a maximum. Thereafter, heme b concentrations decreased again to an average of 120 ± 60 pmol L-1. When normalised to total particulate carbon, heme b was most abundant during the initiation of the nutrient replete spring bloom, when ratios reached 52 ± 24 μmol mol-1; ten times higher than values observed both pre and post the primary bloom. Concentrations of heme b correlated with those of chlorophyll a. Nevertheless, differences were observed in the relative concentrations of the two parameters, with heme b concentrations increasing relative to chlorophyll a during the growth of the primary bloom, decreasing over the period of the secondary bloom and increasing again through the latter period of the experiment. Heme b abundance was therefore influenced by nutrient concentrations and also likely by changing community composition. In half of the mesocosms, pCO2 was elevated and maintained at ca.1000 μatm, however we observed no significant differences between heme b in plus or ambient pCO2 mesocosms, either in absolute terms, or relative to total particulate carbon and chlorophyll a. The results obtained in this study contribute to our understanding of the distribution of this significant component of the biogenic iron pool, and provide an iron replete coastal water end member that aids the interpretation of the distributions of heme b in more iron deplete open ocean waters. PMID:28426768

Cost-effective water quality assessment through the integration of monitoring data and modeling results

NASA Astrophysics Data System (ADS)

Lobuglio, Joseph N.; Characklis, Gregory W.; Serre, Marc L.

2007-03-01

Sparse monitoring data and error inherent in water quality models make the identification of waters not meeting regulatory standards uncertain. Additional monitoring can be implemented to reduce this uncertainty, but it is often expensive. These costs are currently a major concern, since developing total maximum daily loads, as mandated by the Clean Water Act, will require assessing tens of thousands of water bodies across the United States. This work uses the Bayesian maximum entropy (BME) method of modern geostatistics to integrate water quality monitoring data together with model predictions to provide improved estimates of water quality in a cost-effective manner. This information includes estimates of uncertainty and can be used to aid probabilistic-based decisions concerning the status of a water (i.e., impaired or not impaired) and the level of monitoring needed to characterize the water for regulatory purposes. This approach is applied to the Catawba River reservoir system in western North Carolina as a means of estimating seasonal chlorophyll a concentration. Mean concentration and confidence intervals for chlorophyll a are estimated for 66 reservoir segments over an 11-year period (726 values) based on 219 measured seasonal averages and 54 model predictions. Although the model predictions had a high degree of uncertainty, integration of modeling results via BME methods reduced the uncertainty associated with chlorophyll estimates compared with estimates made solely with information from monitoring efforts. Probabilistic predictions of future chlorophyll levels on one reservoir are used to illustrate the cost savings that can be achieved by less extensive and rigorous monitoring methods within the BME framework. While BME methods have been applied in several environmental contexts, employing these methods as a means of integrating monitoring and modeling results, as well as application of this approach to the assessment of surface water monitoring networks, represent unexplored areas of research.

Optimization of pre-sowing magnetic field doses through RSM in pea

NASA Astrophysics Data System (ADS)

Iqbal, M.; Ahmad, I.; Hussain, S. M.; Khera, R. A.; Bokhari, T. H.; Shehzad, M. A.

2013-09-01

Seed pre-sowing magnetic field treatment was reported to induce biochemical and physiological changes. In the present study, response surface methodology was used for deduction of optimal magnetic field doses. Improved growth and yield responses in the pea cultivar were achieved using a rotatable central composite design and multivariate data analysis. The growth parameters such as root and shoot fresh masses and lengths as well as yield were enhanced at a certain magnetic field level. The chlorophyll contents were also enhanced significantly vs. the control. The low magnetic field strength for longer duration of exposure/ high strength for shorter exposure were found to be optimal points for maximum responses in root fresh mass, chlorophyll `a' contents, and green pod yield/plant, respectively and a similar trend was observed for other measured parameters. The results indicate that the magnetic field pre-sowing seed treatment can be used practically to enhance the growth and yield in pea cultivar and response surface methodology was found an efficient experimental tool for optimization of the treatment level to obtain maximum response of interest.

Satellite-observed variability of phytoplankton size classes associated with a cold eddy in the South China Sea.

PubMed

Lin, Junfang; Cao, Wenxi; Wang, Guifen; Hu, Shuibo

2014-06-15

Ocean-color remote sensing has been used as a tool to detect phytoplankton size classes (PSCs). In this study, a three-component model of PSC was reparameterized using seven years of pigment measurements acquired in the South China Sea (SCS). The model was then used to infer PSC in a cyclonic eddy which was observed west of Luzon Island from SeaWiFS chlorophyll-a (chla) and sea-surface height anomaly (SSHA) products. Enhanced productivity and a shift in the PSC were observed, which were likely due to upwelling of nutrient-rich water into the euphotic zone. The supply of nutrients promoted the growth of larger cells (micro- and nanoplankton), and the PSC shifted to greater sizes. However, the picoplankton were still important and contributed ∼48% to total chla concentration. In addition, PSC time series revealed a lag period of about three weeks between maximum eddy intensity and maximum chlorophyll, which may have been related to phytoplankton growth rate and duration of eddy intensity. Copyright © 2014 Elsevier Ltd. All rights reserved.

Metaproteome of the viral concentrates from the deep chlorophyll maximum of the South China Sea

NASA Astrophysics Data System (ADS)

Xie, Zhang-Xian; Chen, Feng; Zhang, Shu-Feng; Wang, Ming-Hua; Zhang, Hao; Kong, Ling-Fen; Dai, Min-Han; Hong, Hua-Sheng; Lin, Lin; Wang, Da-Zhi

2016-04-01

Viral concentrates (VCs) have been commonly used for studying viral diversity, viral metagenomics and virus-host interactions in the natural ecosystem. However, the protein characteristics of VCs have not been explored. Here, we applied shotgun proteomics to characterize the proteins of VCs collected from the oligotrophic deep chlorophyll maximum of the South China Sea. We found that 34% of the identified proteins were assigned to the viruses, mainly being those of SAR11 related bacteria, cyanobacteria and picophytoeukaryotes. The remaining 66% were non-viral proteins mostly originating from diverse bacteria, such as SAR324, SAR11 and the Alteromonadales, and were functionally dominated by transport, translation, sulfur metabolism and one-carbon metabolism. Among the non-viral proteins, 28% were extracellular proteins and 10% were identified exclusively in the VCs, suggesting that non-viral entities might exist in the VCs. This study demonstrated that metaproteomics provides a valuable avenue to explore not only the diversity and structure of a viral community but also the novel ecological functions affiliated with microbes in the natural environment.

Influence of nitrogen and phosphorous on the growth and root morphology of Acer mono

PubMed Central

Zhang, Peng; Shen, Hai-long; Salahuddin

2017-01-01

Nitrogen and phosphorous are critical determinants of plant growth and productivity, and both plant growth and root morphology are important parameters for evaluating the effects of supplied nutrients. Previous work has shown that the growth of Acer mono seedlings is retarded under nursery conditions; we applied different levels of N (0, 5, 10, and 15 g plant-1) and P (0, 4, 6 and 8 g plant-1) fertilizer to investigate the effects of fertilization on the growth and root morphology of four-year-old seedlings in the field. Our results indicated that both N and P application significantly affected plant height, root collar diameter, chlorophyll content, and root morphology. Among the nutrient levels, 10 g N and 8 g P were found to yield maximum growth, and the maximum values of plant height, root collar diameter, chlorophyll content, and root morphology were obtained when 10 g N and 8 g P were used together. Therefore, the present study demonstrates that optimum levels of N and P can be used to improve seedling health and growth during the nursery period. PMID:28234921

Changes in photosynthesis and leaf characteristics with tree height in five dipterocarp species in a tropical rain forest.

PubMed

Kenzo, Tanaka; Ichie, Tomoaki; Watanabe, Yoko; Yoneda, Reiji; Ninomiya, Ikuo; Koike, Takayoshi

2006-07-01

Variations in leaf photosynthetic, morphological and biochemical properties with increasing plant height from seedlings to emergent trees were investigated in five dipterocarp species in a Malaysian tropical rain forest. Canopy openness increased significantly with tree height. Photosynthetic properties, such as photosynthetic capacity at light saturation, light compensation point, maximum rate of carboxylation and maximum rate of photosynthetic electron transport, all increased significantly with tree height. Leaf morphological and biochemical traits, such as leaf mass per area, palisade layer thickness, nitrogen concentration per unit area, chlorophyll concentration per unit dry mass and chlorophyll to nitrogen ratio, also changed significantly with tree height. Leaf properties had simple and significant relationships with tree height, with few intra- and interspecies differences. Our results therefore suggest that the photosynthetic capacity of dipterocarp trees depends on tree height, and that the trees adapt to the light environment by adjusting their leaf morphological and biochemical properties. These results should aid in developing models that can accurately estimate carbon dioxide flux and biomass production in tropical rain forests.

Random Heterogeneity Scales and Probabilistic Description of the Long-Lifetime Regime of Fatigue (Preprint)

DTIC Science & Technology

2007-06-01

of subsurface mechanism occurring with decreasing stress. Szczepanski, et al . [21] show that this trend continues into the 107 – 109 cycles regime...close to maximum shear, i.e., slip deformation. 10 20 30 40 50 60 1x105 1x106 Microstructure A Microstructure B An gl e of fa ce t n or m al w .r. t...Szczepanski, et al [22] have also identified this as the predominant subsurface crack initiation mechanism at ultrasonic loading frequencies. The

The Gulf of Aden Intermediate Water Intrusion Regulates the Southern Red Sea Summer Phytoplankton Blooms.

PubMed

Dreano, Denis; Raitsos, Dionysios E; Gittings, John; Krokos, George; Hoteit, Ibrahim

2016-01-01

Knowledge on large-scale biological processes in the southern Red Sea is relatively limited, primarily due to the scarce in situ, and satellite-derived chlorophyll-a (Chl-a) datasets. During summer, adverse atmospheric conditions in the southern Red Sea (haze and clouds) have long severely limited the retrieval of satellite ocean colour observations. Recently, a new merged ocean colour product developed by the European Space Agency (ESA)-the Ocean Color Climate Change Initiative (OC-CCI)-has substantially improved the southern Red Sea coverage of Chl-a, allowing the discovery of unexpected intense summer blooms. Here we provide the first detailed description of their spatiotemporal distribution and report the mechanisms regulating them. During summer, the monsoon-driven wind reversal modifies the circulation dynamics at the Bab-el-Mandeb strait, leading to a subsurface influx of colder, fresher, nutrient-rich water from the Indian Ocean. Using satellite observations, model simulation outputs, and in situ datasets, we track the pathway of this intrusion into the extensive shallow areas and coral reef complexes along the basin's shores. We also provide statistical evidence that the subsurface intrusion plays a key role in the development of the southern Red Sea phytoplankton blooms.

Induced seismicity constraints on subsurface geological structure, Paradox Valley, Colorado

NASA Astrophysics Data System (ADS)

Block, Lisa V.; Wood, Christopher K.; Yeck, William L.; King, Vanessa M.

2015-02-01

Precise relative hypocentres of seismic events induced by long-term fluid injection at the Paradox Valley Unit (PVU) brine disposal well provide constraints on the subsurface geological structure and compliment information available from deep seismic reflection and well data. We use the 3-D spatial distribution of the hypocentres to refine the locations, strikes, and throws of subsurface faults interpre­ted previously from geophysical surveys and to infer the existence of previously unidentified subsurface faults. From distinct epicentre lineations and focal mechanism trends, we identify a set of conjugate fracture orientations consistent with shear-slip reactivation of late-Palaeozoic fractures over a widespread area, as well as an additional fracture orientation present only near the injection well. We propose simple Mohr-Coulomb fracture models to explain these observations. The observation that induced seismicity preferentially occurs along one of the identified conjugate fracture orientations can be explained by a rotation in the direction of the regional maximum compressive stress from the time when the fractures were formed to the present. Shear slip along the third fracture orientation observed near the injection well is inconsistent with the current regional stress field and suggests a local rotation of the horizontal stresses. The detailed subsurface model produced by this analysis provides important insights for anticipating spatial patterns of future induced seismicity and for evaluation of possible additional injection well sites that are likely to be seismically and hydrologically isolated from the current well. In addition, the interpreted fault patterns provide constraints for estimating the maximum magnitude earthquake that may be induced, and for building geomechanical models to simulate pore pressure diffusion, stress changes and earthquake triggering.

Negative response of photosynthesis to natural and projected high seawater temperatures estimated by pulse amplitude modulation fluorometry in a temperate coral

PubMed Central

Caroselli, Erik; Falini, Giuseppe; Goffredo, Stefano; Dubinsky, Zvy; Levy, Oren

2015-01-01

Balanophyllia europaea is a shallow water solitary zooxanthellate coral, endemic to the Mediterranean Sea. Extensive field studies across a latitudinal temperature gradient highlight detrimental effects of rising temperatures on its growth, demography, and skeletal characteristics, suggesting that depression of photosynthesis at high temperatures might cause these negative effects. Here we test this hypothesis by analyzing, by means of pulse amplitude modulation fluorometry, the photosynthetic efficiency of B. europaea specimens exposed in aquaria to the annual range of temperatures experienced in the field (13, 18, and 28°C), and two extreme temperatures expected for 2100 as a consequence of global warming (29 and 32°C). The indicators of photosynthetic performance analyzed (maximum and effective quantum yield) showed that maximum efficiency was reached at 20.0–21.6°C, slightly higher than the annual mean temperature in the field (18°C). Photosynthetic efficiency decreased from 20.0 to 13°C and even more strongly from 21.6 to 32°C. An unusual form of bleaching was observed, with a maximum zooxanthellae density at 18°C that strongly decreased from 18 to 32°C. Chlorophyll a concentration per zooxanthellae cell showed an opposite trend as it was minimal at 18°C and increased from 18 to 32°C. Since the areal chlorophyll concentration is the product of the zooxanthellae density and its cellular content, these trends resulted in a homogeneous chlorophyll concentration per coral surface across temperature treatments. This confirms that B. europaea photosynthesis is progressively depressed at temperatures >21.6°C, supporting previous hypotheses raised by the studies on growth and demography of this species. This study also confirms the threats posed to this species by the ongoing seawater warming. PMID:26582993

Seasonal pattern of metal bioaccumulation and their toxicity on Sphagnum squarrosum.

PubMed

Saxena, Anuj

2006-01-01

Present study was undertaken as an attempt to study the effect of pollutants on biological responses of Sphagnum growing at Kainchi, Kumaon hills (Uttranchal). Sphagnum plants of almost identical size, collected from the marked sites of Kainchi in different seasons viz., monsoon, winter, summer and again in monsoon, were analysed for chlorophyll, protein, shoot length and nitrate reductase and peroxidase activities. Maximum chlorophyll, protein, shoots length and nitrate reductase activities were observed during the monsoon while minimum in summers. The abundance of Sphagnum and two other bryophytes, Marchantia and Plagiochasma was also higher in monsoon than in other seasons. The study also indicated that Sphagnum has more bioaccumulation and tolerance potential for heavy metals than Marchantia and Plagiochasma.

Insights on multivariate updates of physical and biogeochemical ocean variables using an Ensemble Kalman Filter and an idealized model of upwelling

NASA Astrophysics Data System (ADS)

Yu, Liuqian; Fennel, Katja; Bertino, Laurent; Gharamti, Mohamad El; Thompson, Keith R.

2018-06-01

Effective data assimilation methods for incorporating observations into marine biogeochemical models are required to improve hindcasts, nowcasts and forecasts of the ocean's biogeochemical state. Recent assimilation efforts have shown that updating model physics alone can degrade biogeochemical fields while only updating biogeochemical variables may not improve a model's predictive skill when the physical fields are inaccurate. Here we systematically investigate whether multivariate updates of physical and biogeochemical model states are superior to only updating either physical or biogeochemical variables. We conducted a series of twin experiments in an idealized ocean channel that experiences wind-driven upwelling. The forecast model was forced with biased wind stress and perturbed biogeochemical model parameters compared to the model run representing the "truth". Taking advantage of the multivariate nature of the deterministic Ensemble Kalman Filter (DEnKF), we assimilated different combinations of synthetic physical (sea surface height, sea surface temperature and temperature profiles) and biogeochemical (surface chlorophyll and nitrate profiles) observations. We show that when biogeochemical and physical properties are highly correlated (e.g., thermocline and nutricline), multivariate updates of both are essential for improving model skill and can be accomplished by assimilating either physical (e.g., temperature profiles) or biogeochemical (e.g., nutrient profiles) observations. In our idealized domain, the improvement is largely due to a better representation of nutrient upwelling, which results in a more accurate nutrient input into the euphotic zone. In contrast, assimilating surface chlorophyll improves the model state only slightly, because surface chlorophyll contains little information about the vertical density structure. We also show that a degradation of the correlation between observed subsurface temperature and nutrient fields, which has been an issue in several previous assimilation studies, can be reduced by multivariate updates of physical and biogeochemical fields.

90% Below 10m: Summer Biomass and Productivity are Invisible to Satellites and Surface Transects in Modern Lake Michigan

NASA Astrophysics Data System (ADS)

Cuhel, R. L.; Aguilar, C.

2013-12-01

Deep biomass maxima, often identified through in vivo chlorophyll fluorescence profiles (DCM or deep chlorophyll maximum), have been common 'forever' in Lake Michigan. Usually present in the upper thermocline zone of 15-25m, summer DCM populations were characteristically dominated by diatoms. Increased light transmission in quagga mussel (QM) engineered Lake Michigan waters now has enabled phytoplankton to proliferate in discrete layers as deep as 50m. Instances of multiple fluorescence maxima and transmission minima, often not coincident, document the habitat diversity available in clear, often sequentially stratified offshore waters and MidLake Reef Complex locations. Phytoplankton population structure has also changed, and diatoms have become a much smaller component of algal biomass. Discrete layers of chromatically adapted picoplankton now dominate the deepest biomass maxima. Photosynthetic characteristics differ substantially among leading edge, principal biomass or fluorescence, and deep trailing edge populations. Saturation coefficients are often as low as 25 uEin/m2/sec, or 1% of midday summer surface radiance. In vivo fluorescence is only loosely related to biomass, which is greatest in shallower zones of beam transmission minima. On a daily basis, areal primary productivity post-QM is less than half of previous levels, and seasonality has been muted. Spring bloom enhancement no longer exists, and the depth zone of maximum productivity is 10-20m deeper than during the diatom epoch. Altered phytoplankton community structure and decreased productivity left strong signals in biogeochemical time series measurements. A clear discontinuity in silicate cycling indicates dampened diatom productivity and consequently lower silica loss through deposition and burial. Porewater analysis pre- and post-QM shows evidence of reduced organic sedimentation overall, with an especially strong signal in decreased potential silicate efflux. Biogeochemical consequences include weaker nutrient gradients in nearsurface upper thermocline zones. Subsurface minima for silicate and nitrate are common, but of small magnitude compared to pre-QM profiles. By late July of 2013, total CO2 in deep waters increased by nearly 5% compared to surface, but the biomass and productivity maxima are far below the thermocline defining 'surface water.' Phosphate remains in the range of 10-20nM throughout the water column. Particulate P, the primary component of total P, is maximal in 15-25m depths but rarely exceeds 80nM P. Phytoplankton favor ammonium as an N source and recycling plus mussel excretion reduce demand for nitrate. As a result, many cycles and/or inventories for biomass and nutrient parameters appear to have reached new conditions quite different from pre-QM lake characteristics. The 15-year time series includes meteorologically anomalous years that are biogeochemically distinct from bracketing years, but interannual continuity is rare.

Quality evaluation of the edible blue-green alga Nostoc flagelliforme using a chlorophyll fluorescence parameter and several biochemical markers.

PubMed

Gao, Xiang; Yang, Yiwen; Ai, Yufeng; Luo, Hongyi; Qiu, Baosheng

2014-01-15

Nostoc flagelliforme is an edible blue-green alga with herbal and dietary values. Due to the diminishing supply of natural N. flagelliforme and the large investment on the development of its cultivation technology, it is anticipated that artificially cultured N. flagelliforme will soon sustain the market supply. Once this change occurs, the storage-associated quality problem will become the focus of attention for future trade. In this paper, we used a chlorophyll fluorescence parameter, maximum quantum efficiency of Photosystem II (Fv/Fm), and several biomarkers to evaluate the quality of several N. flagelliforme samples. It was found that longer storage times resulted in darker coloured solutions (released pigments) and decreased amounts of chlorophyll a (Chl a) and water-soluble sugars (WSS). Additionally, a higher Fv/Fm value suggests better physiological recovery and quality. In actual application, determination of Fv/Fm would be the first step for evaluating the quality of N. flagelliforme, and the biochemical indexes would serve as good secondary markers. Copyright © 2013 Elsevier Ltd. All rights reserved.

Effects of rainfall patterns and land cover on the subsurface flow generation of sloping Ferralsols in southern China

PubMed Central

Yang, Jie; Tang, Chongjun; Chen, Lihua; Liu, Yaojun; Wang, Lingyun

2017-01-01

Rainfall patterns and land cover are two important factors that affect the runoff generation process. To determine the surface and subsurface flows associated with different rainfall patterns on sloping Ferralsols under different land cover types, observational data related to surface and subsurface flows from 5 m × 15 m plots were collected from 2010 to 2012. The experiment was conducted to assess three land cover types (grass, litter cover and bare land) in the Jiangxi Provincial Soil and Water Conservation Ecological Park. During the study period, 114 natural rainfall events produced subsurface flow and were divided into four groups using k-means clustering according to rainfall duration, rainfall depth and maximum 30-min rainfall intensity. The results showed that the total runoff and surface flow values were highest for bare land under all four rainfall patterns and lowest for the covered plots. However, covered plots generated higher subsurface flow values than bare land. Moreover, the surface and subsurface flows associated with the three land cover types differed significantly under different rainfall patterns. Rainfall patterns with low intensities and long durations created more subsurface flow in the grass and litter cover types, whereas rainfall patterns with high intensities and short durations resulted in greater surface flow over bare land. Rainfall pattern I had the highest surface and subsurface flow values for the grass cover and litter cover types. The highest surface flow value and lowest subsurface flow value for bare land occurred under rainfall pattern IV. Rainfall pattern II generated the highest subsurface flow value for bare land. Therefore, grass or litter cover are able to convert more surface flow into subsurface flow under different rainfall patterns. The rainfall patterns studied had greater effects on subsurface flow than on total runoff and surface flow for covered surfaces, as well as a greater effect on surface flows associated with bare land. PMID:28792507

Aerobic Anoxygenic Phototrophic Bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Revised

NASA Technical Reports Server (NTRS)

Cottrell, Matthew T.; Mannino, Antonio; Kirchman, David L.

2005-01-01

The abundance of aerobic anoxygenic phototrophic (AM) bacteria, cyanobacteria and heterotrophs was examined in the Mid-Atlantic Bight and the central North Pacific gyre using infrared fluorescence microscopy coupled with image analysis and flow cytometry. AAP bacteria comprised 5% to 16% of total prokaryotes in the Atlantic but only 5% or less in the Pacific. In the Atlantic, AAP bacterial abundance was as much as 2-fold higher than Prochlorococcus and 10-folder higher than Synechococcus. In contrast, Prochlorococcus outnumbered AAP bacteria 5- to 50-fold in the Pacific. In both oceans, subsurface abundance maxima occurred within the photic zone, and AAP bacteria were least abundant below the 1% light depth. Concentrations of bacteriochlorophyll a (BChl a) were low (approx.1%) compared to chlorophyll a. Although the BChl a content of AAP bacteria per cell was typically 20- to 250-fold lower than the divinyl-chlorophyll a content of Prochlorococcus, in shelf break water the pigment content of AAP bacteria approached that of Prochlorococcus. The abundance of AAP bacteria rivaled some groups of strictly heterotrophic bacteria and was often higher than the abundance of known AAP genera (Erythrobacter and Roseobacter spp.). The distribution of AAP bacteria in the water column, which was similar in the Atlantic and the Pacific, was consistent with phototrophy.

Variation in chlorophyll content per unit leaf area in spring wheat and implications for selection in segregating material.

PubMed

Hamblin, John; Stefanova, Katia; Angessa, Tefera Tolera

2014-01-01

Reduced levels of leaf chlorophyll content per unit leaf area in crops may be of advantage in the search for higher yields. Possible reasons include better light distribution in the crop canopy and less photochemical damage to leaves absorbing more light energy than required for maximum photosynthesis. Reduced chlorophyll may also reduce the heat load at the top of canopy, reducing water requirements to cool leaves. Chloroplasts are nutrient rich and reducing their number may increase available nutrients for growth and development. To determine whether this hypothesis has any validity in spring wheat requires an understanding of genotypic differences in leaf chlorophyll content per unit area in diverse germplasm. This was measured with a SPAD 502 as SPAD units. The study was conducted in series of environments involving up to 28 genotypes, mainly spring wheat. In general, substantial and repeatable genotypic variation was observed. Consistent SPAD readings were recorded for different sampling positions on leaves, between different leaves on single plant, between different plants of the same genotype, and between different genotypes grown in the same or different environments. Plant nutrition affected SPAD units in nutrient poor environments. Wheat genotypes DBW 10 and Transfer were identified as having consistent and contrasting high and low average SPAD readings of 52 and 32 units, respectively, and a methodology to allow selection in segregating populations has been developed.

Detection of herbicide effects on pigment composition and PSII photochemistry in Helianthus annuus by Raman spectroscopy and chlorophyll a fluorescence

NASA Astrophysics Data System (ADS)

Vítek, Petr; Novotná, Kateřina; Hodaňová, Petra; Rapantová, Barbora; Klem, Karel

2017-01-01

The effects of herbicides from three mode-of-action groups - inhibitors of protoporphyrinogen oxidase (carfentrazone-ethyl), inhibitors of carotenoid biosynthesis (mesotrione, clomazone, and diflufenican), and inhibitors of acetolactate synthase (amidosulfuron) - were studied in sunflower plants (Helianthus annuus). Raman spectroscopy, chlorophyll fluorescence (ChlF) imaging, and UV screening of ChlF were combined to evaluate changes in pigment composition, photosystem II (PSII) photochemistry, and non-photochemical quenching in plant leaves 6 d after herbicide application. The Raman signals of phenolic compounds, carotenoids, and chlorophyll were evaluated and differences in their intensity ratios were observed. Strongly augmented relative content of phenolic compounds was observed in the case of amidosulfuron-treated plants, with a simultaneous decrease in the chlorophyll/carotenoid intensity ratio. The results were confirmed by in vivo measurement of flavonols using UV screening of ChlF. Herbicides from the group of carotenoid biosynthesis inhibitors significantly decreased both the maximum quantum efficiency of PSII and non-photochemical quenching as determined by ChlF. Resonance Raman imaging (mapping) data with high resolution (150,000-200,000 spectra) are presented, showing the distribution of carotenoids in H. annuus leaves treated by two of the herbicides acting as inhibitors of carotenoid biosynthesis (clomazone or diflufenican). Clear signs were observed that the treatment induced carotenoid depletion within sunflower leaves. The depletion spatial pattern registered differed depending on the type of herbicide applied.

Chlorophyll fluorescence emission as a reporter on cold tolerance in Arabidopsis thaliana accessions

PubMed Central

Mishra, Anamika; Höermiller, Imke I; Heyer, Arnd G; Nedbal, Ladislav

2011-01-01

Non-invasive, high-throughput screening methods are valuable tools in breeding for abiotic stress tolerance in plants. Optical signals such as chlorophyll fluorescence emission can be instrumental in developing new screening techniques. In order to examine the potential of chlorophyll fluorescence to reveal plant tolerance to low temperatures, we used a collection of nine Arabidopsis thaliana accessions and compared their fluorescence features with cold tolerance quantified by the well established electrolyte leakage method on detached leaves. We found that, during progressive cooling, the minimal chlorophyll fluorescence emission rose strongly and that this rise was highly dependent on the cold tolerance of the accessions. Maximum quantum yield of PSII photochemistry and steady state fluorescence normalized to minimal fluorescence were also highly correlated to the cold tolerance measured by the electrolyte leakage method. In order to further increase the capacity of the fluorescence detection to reveal the low temperature tolerance, we applied combinatorial imaging that employs plant classification based on multiple fluorescence features. We found that this method, by including the resolving power of several fluorescence features, can be well employed to detect cold tolerance already at mild sub-zero temperatures. Therefore, there is no need to freeze the screened plants to the largely damaging temperatures of around −15°C. This, together with the method's easy applicability, represents a major advantage of the fluorescence technique over the conventional electrolyte leakage method. PMID:21427532

Sampling Biases in MODIS and SeaWiFS Ocean Chlorophyll Data

NASA Technical Reports Server (NTRS)

Gregg, Watson W.; Casey, Nancy W.

2007-01-01

Although modem ocean color sensors, such as MODIS and SeaWiFS are often considered global missions, in reality it takes many days, even months, to sample the ocean surface enough to provide complete global coverage. The irregular temporal sampling of ocean color sensors can produce biases in monthly and annual mean chlorophyll estimates. We quantified the biases due to sampling using data assimilation to create a "truth field", which we then sub-sampled using the observational patterns of MODIS and SeaWiFS. Monthly and annual mean chlorophyll estimates from these sub-sampled, incomplete daily fields were constructed and compared to monthly and annual means from the complete daily fields of the assimilation model, at a spatial resolution of 1.25deg longitude by 0.67deg latitude. The results showed that global annual mean biases were positive, reaching nearly 8% (MODIS) and >5% (SeaWiFS). For perspective the maximum interannual variability in the SeaWiFS chlorophyll record was about 3%. Annual mean sampling biases were low (<3%) in the midlatitudes (between -40deg and 40deg). Low interannual variability in the global annual mean sampling biases suggested that global scale trend analyses were valid. High latitude biases were much higher than the global annual means, up to 20% as a basin annual mean, and over 80% in some months. This was the result of the high solar zenith angle exclusion in the processing algorithms. Only data where the solar angle is <75deg are permitted, in contrast to the assimilation which samples regularly over the entire area and month. High solar zenith angles do not facilitate phytoplankton photosynthesis and consequently low chlorophyll concentrations occurring here are missed by the data sets. Ocean color sensors selectively sample in locations and times of favorable phytoplankton growth, producing overestimates of chlorophyll. The biases derived from lack of sampling in the high latitudes varied monthly, leading to artifacts in the apparent seasonal cycle from ocean color sensors. A false secondary peak in chlorophyll occurred in May-August, which resulted from lack of sampling in the Antarctic.

On the decomposition of foliar hyperspectral signatures for the high-fidelity discrimination and monitoring of crops

NASA Astrophysics Data System (ADS)

Baranoski, Gladimir V. G.; Van Leeuwen, Spencer; Chen, Tenn F.

2016-04-01

Hyperspectral technologies are being increasingly employed in precision agriculture. By separating the surface and subsurface components of foliar hyperspectral signatures using polarization optics, it is possible to enhance the remote discrimination of different plant species and optimize the assessment of different factors associated with the crops' health status such as chlorophyll levels and water content. These initiatives, in turn, can lead to higher crop yield and lower environmental impact through a more effective use of freshwater supplies and fertilizers (reducing the risk of nitrogen leaching). It is important to consider, however, that the main varieties of crops, represented by C3 (e.g., soy) and C4 (e.g., maize) plants, have markedly distinct morphological characteristics. Accordingly, the influence of these characteristics on their interactions with impinging light may affect the selection of optimal probe wavelengths for specific applications making use of combined hyperspectral and polarization measurements. In this work, we compare the sensitivity of the surface and subsurface reflectance responses of C3 and C4 plants to different spectral and geometrical light incidence conditions. In our comparisons, we also consider intra- species variability with respect to specimen characterization data. This investigation is supported by measured biophysical data and predictive light transport simulations. The results of our comparisons indicate that the surface and subsurface reflectance responses of C3 and C4 plants depict well-defined patterns of sensitivity to varying illumination conditions. We believe that these patterns should be considered in the design of new high-fidelity crop discrimination and monitoring procedures.

Drought is Coming: Monitoring Vegetation Response to Water Scarcity through Variable Chlorophyll a Fluorescence

NASA Astrophysics Data System (ADS)

Guadagno, C. R.; Beverly, D.; Pleban, J. R.; Speckman, H. N.; Ewers, B. E.; Weinig, C.

2017-12-01

Aridity is one of the most pronounced environmental limits to plant survival, and understanding how plants respond to drought and recovery is crucial for predicting impacts on managed and natural ecosystems. Changes in soil moisture conditions induce a suite of physiological responses from the cell to ecosystem scale, complicating the assessment of drought effects. Characterizing early indicators of water scarcity across species can inform biophysical models with improved understanding of plant hydraulics. While indexes exist for drought monitoring across scales, many are unable to identify imminent vegetative drought. We explore a method of early diagnosis using leaf-level and kinetic imaging measures of variable chlorophyll a fluorescence. This is a fast and reliable tool capturing leaf physiological changes in advance of changes in NDVI or passive solar induced fluorescence. Both image and leaf level Pulse Amplitude Method (PAM) measurements illustrate the utility of variable chlorophyll a fluorescence for monitoring vegetative drought. Variable fluorescence was monitored across populations of crops, desert shrubs, montane conifers and riparian deciduous trees under variable water regimes. We found a strong correlation (R = 0.85) between the maximum efficiency of photosystem II measured using variable fluorescence (Fv'Fm') and leaf level electrolyte leakage, a proximal cause of drought stress induced by cellular damage in leaves. This association was confirmed in two gymnosperm species (Picea engelmannii and Pinus contorta) and for diverse varieties of the crop species Brassica rapa. The use of chlorophyll a fluorescence per image also allowed for early detection of drought in aspen (Populus tremuloides). These results provide evidence that variable chlorophyll fluorescence decreases between 25% and 70% in mild and severely droughted twigs with respect to ones collected from trees in wet soil conditions. While current systems for monitoring variable fluorescence are limited in scale, chlorophyll fluorescence comprises an indicator of drought stress across multiple spatial scales, from leaf to ecosystem level.

Difference in oxidative stress tolerance between rice cultivars estimated with chlorophyll fluorescence analysis.

PubMed

Kasajima, Ichiro

2017-04-26

Oxidative stress is considered to be involved in growth retardation of plants when they are exposed to a variety of biotic and abiotic stresses. Despite its potential importance in improving crop production, comparative studies on oxidative stress tolerance between rice (Oryza sativa L.) cultivars are limited. This work describes the difference in term of oxidative stress tolerance between 72 rice cultivars. 72 rice cultivars grown under naturally lit greenhouse were used in this study. Excised leaf discs were subjected to a low concentration of methyl viologen (paraquat), a chemical reagent known to generate reactive oxygen species in chloroplast. Chlorophyll fluorescence analysis using a two-dimensional fluorescence meter, ion leakage analysis as well as the measurement of chlorophyll contents were used to evaluate the oxidative stress tolerance of leaf discs. Furthermore, fluorescence intensities were finely analyzed based on new fluorescence theories that we have optimized. Treatment of leaf discs with methyl viologen caused differential decrease of maximum quantum yield of photosystem II (Fv/Fm) between cultivars. Decrease of Fv/Fm was also closely correlated with increase of ion leakage and decrease of chlorophyll a/b ratio. Fv/Fm was factorized into photochemical and non-photochemical parameters to classify rice cultivars into sensitive and tolerant ones. Among the 72 compared rice cultivars, the traditional cultivar Co13 was identified as the most tolerant to oxidative stress. Koshihikari, a dominant modern Japonica cultivar in Japan as well as IR58, one of the modern Indica breeding lines exhibited a strong tolerance to oxidative stress. Close correlation between Fv/Fm and chlorophyll a/b ratio provides a simple method to estimate oxidative stress tolerance, without measurement of chlorophyll fluorescence with special equipment. The fact that modern cultivars, especially major cultivars possessed tolerance to oxidative stress suggests that oxidative stress tolerance is one of the agricultural traits prerequisite for improvement of modern rice cultivars. Data presented in this study would enable breeding of rice cultivars having strong tolerance to oxidative stress.

Impact of the river Liffey discharge on nutrient and chlorophyll concentrations in the Liffey estuary and Dublin Bay (Irish Sea)

NASA Astrophysics Data System (ADS)

O'Higgins, T. G.; Wilson, J. G.

2005-08-01

Temperature, salinity, nutrients (total oxidised nitrogen (TON), ammonium (NH 4) and orthophosphate (PO 4)) and chlorophyll a were monitored in the Liffey estuary and Dublin Bay from June 2000 to June 2003. Four groups of sites were defined comprising the upper estuary (Gp. I), the outer estuary (Gp. III) with a small set (Gp. II) of sites between Groups I and III heavily influenced by the sewage treatment works outflow, and the Bay proper (Gp. IV). Riverine inputs of TON and PO 4 were calculated at an average of 826 t N y -1 and 31 t P y -1, respectively, and were largely controlled by flow rate. The sewage treatment works were identified as a major source of PO 4 and NH 4 to the system. Mixing in the upper estuary of nutrient limited saline waters with hypernutrified river water regularly (i.e. annually) produced relatively high concentrations of chlorophyll a (>10 mg chl a m -3), and also sporadic blooms with extremely high chlorophyll a values (max. 121.6 mg chl a m -3). These latter phytoplankton blooms occurred in high salinity waters and were due to mixing of nutrient limited saline waters and nutrient rich river waters. The mean annual flux of phytoplankton carbon from the river Liffey was calculated at 23.5 t C y -1, of which half was accumulated or remineralised in the estuary and did not enter the Bay. In the Bay proper (Gp. IV) summer nutrient concentrations dropped below detection limits, and chlorophyll a concentrations followed the classic pattern with a spring bloom maximum of 5.5 mg chl a m -3. This pattern in nutrients and chlorophyll a came from the advection of waters into the Bay from an offshore source. Overall while there was considerable evidence for eutrophication in the estuary, the bay itself showed little biological response to nutrient loading.

Mesozooplankton grazing during spring sea-ice conditions in the eastern Bering Sea

NASA Astrophysics Data System (ADS)

Campbell, Robert G.; Ashjian, Carin J.; Sherr, Evelyn B.; Sherr, Barry F.; Lomas, Michael W.; Ross, Celia; Alatalo, Philip; Gelfman, Celia; Keuren, Donna Van

2016-12-01

Mesozooplankton (copepods and euphausiids) grazing rates and prey preferences were determined during a series of three research cruises to the eastern Bering Sea in spring 2008, 2009, and 2010. Chlorophyll was dominated by large cells (>5 μm), especially at bloom locations where they usually comprised greater than 90% of the total chlorophyll biomass. The relative importance of microzooplankton to the prey field biomass decreased with increasing chlorophyll concentration, and was less than 10% of the total prey biomass in ice-edge bloom regions. Overall, microzooplankton was the preferred prey of the mesozooplankton, although phytoplankton/ice algae were the dominant component of the diet because of their much greater biomass, especially during blooms. There were differences between mesozooplankton species in their prey preferences: Metridia pacifica, Pseudocalanus spp. and Calanus spp. had the strongest preference for microzooplankton prey, while euphausiids (Thysanoessa spp.) and Neocalanus flemingeri/plumchrus appeared to feed non-selectively on all prey items. Mesozooplankton exhibited a saturating feeding response to chlorophyll concentration (Holling's type II) that could be modeled by Michaelis-Menten equations. Taxa-specific maximum ingestion rates generally followed allometric theory, with smaller zooplankton having higher feeding rates than larger zooplankton, and ranged from about 4-30% body carbon day-1. Trophic cascades during grazing experiments could result in a substantial underestimate of chlorophyll ingestion rates, especially for those taxa that had a strong preference for microzooplankton. Grazing impacts by mesozooplankton on the integrated chlorophyll biomass and primary production were 2.7±4.4 and 26±48% day-1, respectively. Impacts increased significantly with increasing mesozooplankton biomass, which increased from early to late spring. However, grazing impacts were extremely low in ice-edge bloom regions. Our findings suggest that even when grazing by microzooplankton is included in our grazing impact estimates, about 50% of the primary production in phytoplankton blooms during spring on the eastern Bering Sea shelf is not grazed and is available for direct export to the benthic community.

Does elevated CO2 ameliorate the impact of O3 on chlorophyll content and photosynthesis in potato (Solanum tuberosum)?

PubMed

Donnelly, Alison; Craigon, Jim; Black, Colin R.; Colls, Jeremy J.; Landon, Geoff

2001-04-01

This study examined the impact of season-long exposure to elevated carbon dioxide (CO2) and ozone (O3), individually and in combination, on leaf chlorophyll content and gas exchange characteristics in potato (Solanum tuberosum L. cv. Bintje). Plants grown in open-top chambers were exposed to three CO2 (ambient, 550 and 680 µmol mol-1) and two O3 treatments (ambient and elevated; 25 and 65 nmol mol-1, 8 h day-1 means, respectively) between crop emergence and maturity; plants were also grown in unchambered field plots. Non-destructive measurements of chlorophyll content and visible foliar injury were made for all treatments at 2-week intervals between 43 and 95 days after emergence. Gas exchange measurements were made for all except the intermediate 550 µmol mol-1 CO2 treatment. Season-long exposure to elevated O3 under ambient CO2 reduced chlorophyll content and induced extensive visible foliar damage, but had little effect on net assimilation rate or stomatal conductance. Elevated CO2 had no significant effect on chlorophyll content, but greatly reduced the damaging impact of O3 on chlorophyll content and visible foliar damage. Light-saturated assimilation rates for leaves grown under elevated CO2 were consistently lower when measured under either elevated or ambient CO2 than in equivalent leaves grown under ambient CO2. Analysis of CO2 response curves revealed that CO2-saturated assimilation rate, maximum rates of carboxylation and electron transport and respiration decreased with time. CO2-saturated assimilation rate was reduced by elevated O3 during the early stages of the season, while respiration was significantly greater under elevated CO2 as the crop approached maturity. The physiological origins of these responses and their implications for the performance of potato in a changing climate are discussed.

Mutation in Mg-Protoporphyrin IX Monomethyl Ester Cyclase Decreases Photosynthesis Capacity in Rice

PubMed Central

Wang, Xuexia; Huang, Rongfeng; Quan, Ruidang

2017-01-01

In photosynthesis, the pigments chlorophyll a/b absorb light energy to convert to chemical energy in chloroplasts. Though most enzymes of chlorophyll biosynthesis from glutamyl-tRNA to chlorophyll a/b have been identified, the exact composition and regulation of the multimeric enzyme Mg-protoporphyrin IX monomethyl ester cyclase (MPEC) is largely unknown. In this study, we isolated a rice pale-green leaf mutant m167 with yellow-green leaf phenotype across the whole lifespan. Chlorophyll content decreases 43–51% and the granal stacks of chloroplasts becomes thinner in m167. Chlorophyll fluorescence parameters, including Fv/Fm (the maximum quantum efficiency of PSII) and quantum yield of PSII (Y(II)), were lower in m167 than those in wild type plants (WT), and photosynthesis rate decreases 40% in leaves of m167 mutant compared with WT plants, which lead to yield reduction in m167. Genetic analysis revealed that yellow-green leaf phenotype of m167 is controlled by a single recessive genetic locus. By positional cloning, a single mutated locus, G286A (Alanine 96 to Threonine in protein), was found in the coding sequence of LOC_Os01g17170 (Rice Copper Response Defect 1, OsCRD1), encoding a putative subunit of MPEC. Expression profile analysis demonstrated that OsCRD1 is mainly expressed in green tissues of rice. Sequence alignment analysis of CRD1 indicated that Alanine 96 is very conserved in all green plants and photosynthetic bacteria. OsCRD1 protein mainly locates in chloroplast and the point mutation A96T in OsCRD1 does not change its location. Therefore, Alanine96 of OsCRD1 might be fundamental for MPEC activity, mutation of which leads to deficiency in chlorophyll biosynthesis and chloroplast development and decreases photosynthetic capacity in rice. PMID:28129387

The Mojave vadose zone: a subsurface biosphere analogue for Mars.

PubMed

Abbey, William; Salas, Everett; Bhartia, Rohit; Beegle, Luther W

2013-07-01

If life ever evolved on the surface of Mars, it is unlikely that it would still survive there today, but as Mars evolved from a wet planet to an arid one, the subsurface environment may have presented a refuge from increasingly hostile surface conditions. Since the last glacial maximum, the Mojave Desert has experienced a similar shift from a wet to a dry environment, giving us the opportunity to study here on Earth how subsurface ecosystems in an arid environment adapt to increasingly barren surface conditions. In this paper, we advocate studying the vadose zone ecosystem of the Mojave Desert as an analogue for possible subsurface biospheres on Mars. We also describe several examples of Mars-like terrain found in the Mojave region and discuss ecological insights that might be gained by a thorough examination of the vadose zone in these specific terrains. Examples described include distributary fans (deltas, alluvial fans, etc.), paleosols overlain by basaltic lava flows, and evaporite deposits.

[Effects of simulated acid rain on Quercus glauca seedlings photosynthesis and chlorophyll fluorescence].

PubMed

Li, Jia; Jiang, Hong; Yu, Shu-quan; Jiang, Fu-wei; Yin, Xiu-min; Lu, Mei-juan

2009-09-01

Taking the seedlings of Quercus glauca, a dominant evergreen broadleaf tree species in subtropical area, as test materials, this paper studied their photosynthesis, chlorophyll fluorescence, and chlorophyll content under effects of simulated acid rain with pH 2.5, 4.0, and 5.6 (CK). After 2-year acid rain stress, the net photosynthetic rate of Q. glauca increased significantly with decreasing pH of acid rain. The acid rain with pH 2.5 and 4.0 increased the stomatal conductance and transpiration rate, and the effect was more significant under pH 2.5. The intercellular CO2 concentration decreased in the order of pH 2.5 > pH 5.6 > pH 4.0. The maximum photosynthetic rate, light compensation point, light saturation point, and dark respiration rate were significantly higher under pH 2.5 and 4.0 than under pH 5.6, while the apparent quantum yield was not sensitive to acid rain stress. The maximal photochemical efficiency of PS II and the potential activity of PS II under pH 2.5 and 4.0 were significantly higher than those under pH 5.6. The relative chlorophyll content was in the order of pH 2.5 > pH 5.6 > pH 4.0, and there was a significant difference between pH 2.5 and 4.0. All the results suggested that the photosynthesis and chlorophyll fluorescence of Q. glauca increased under the effects of acid rain with pH 2.5 and 4.0, and the acid rain with pH 2.5 had more obvious effects.

Variability in chlorophyll fluorescence spectra of eggplant fruit grown under different light environments: a case study.

PubMed

Ospina Calvo, Brian; Parapugna, Tamara L; Lagorio, M Gabriela

2017-05-17

The main goal of the present work was to clarify physiological strategies in plants whose chloroplasts were developed under different light environments. The specific objective was to elucidate the influence of the spectral distribution of light on the chlorophyll fluorescence ratio and on photosynthetic parameters. To achieve this purpose, three species of eggplant fruit (black, purple and white striped and white) were used as a case study and their chlorophyll fluorescence was analyzed in detail. Spectra of the non-variable fluorescence in each part of the fruit were corrected for distortions by light reabsorption processes using a physical model. The main conclusion of this work was that the corrected fluorescence ratio was dependent on the contribution of each photosystem to the fluorescence and consequently on the environmental lighting conditions, becoming higher when illumination was rich in long wavelengths. Variable chlorophyll fluorescence, similar to that observed from plant leaves, was detected for the pulp of the black eggplant, for the pulp of the purple and white striped eggplant and for the intact fruit of the black eggplant. The maximum quantum efficiency of photosystem II in the light-adapted state (F' v /F' m ), the quantum efficiency of photosystem II (Φ PSII ), and the photochemical and non-photochemical quenching coefficients (qP and qNP/NPQ respectively) were determined in each case. The results could be explained very interestingly, in relation with the proportion of exciting light reaching each photosystem (I and II). The photochemical parameters obtained from variable chlorophyll fluorescence, allowed us to monitor non-destructively the physiological state of the black fruit during storage under both chilled or room-temperature conditions.

Lake Roosevelt Fisheries Evaluation Program, Part B; Limnology, Primary Production, and Zooplankton in Lake Roosevelt, Washington, 1998 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shields, John; Spotts, Jim; Underwood, Keith

2002-11-01

The Lake Roosevelt Fisheries Evaluation Program is the result of a merger between two projects, the Lake Roosevelt Monitoring Program (BPA No. 8806300) and the Lake Roosevelt Data Collection Project (BPA No. 9404300). These projects were merged in 1996 to continue work historically completed under the separate projects, and is now referred to as the Lake Roosevelt Fisheries Evaluation Program. The 1998 Annual Report, Part B. Limnology, Primary Production, and Zooplankton in Lake Roosevelt, Washington examined the limnology, primary production, and zooplankton at eleven locations throughout the reservoir. The 1998 research protocol required a continuation of the more complete examinationmore » of limnological parameters in Lake Roosevelt that began in 1997. Phytoplankton and periphyton speciation, phytoplankton and periphyton chlorophyll a analysis, complete zooplankton biomass analysis by taxonomic group, and an increased number of limnologic parameters (TDG, TDS, etc.) were examined and compared with 1997 results. Total dissolved gas levels were greatly reduced in 1998, compared with 1997, likely resulting from the relatively normal water year experienced in 1998. Mean water temperatures were similar to what was observed in past years, with a maximum of 22.7 C and a minimum of 2.6 C. Oxygen concentrations were also relatively normal, with a maximum of 16.6 mg/L, and a minimum of 0.9 mg/L. Phytoplankton in Lake Roosevelt was primarily composed of microplankton (29.6%), Cryptophyceae (21.7%), and Bacillriophyceae (17.0 %). Mean total phytoplankton chlorophyll a maximum concentration occurred in May (3.53 mg/m{sup 3}), and the minimum in January (0.39 mg/m{sup 3}). Phytoplankton chlorophyll a concentrations appear to be influenced by hydro-operations and temperature. Trophic status as indicated by phytoplankton chlorophyll a concentrations place Lake Roosevelt in the oligomesotrophic range. Periphyton colonization rates and biovolume were significantly greater at a depth of 1.5 m (5 ft) when compared with a 4.6 m (15 ft) depth, and during the shorter incubation periods (two and four weeks). Mean zooplankton densities were greatest for Copepoda (88 %), then Daphnia spp. (10%) and other Cladocera (2.1%), while the zooplankton biomass assessment indicated Daphnia spp. had the greatest biomass (53.6%), then Copepoda (44.0%) and other Cladocera (2.5%). Mean overall zooplankton densities were the lowest observed since 1991. The cause was unclear, but may have been an artifact of human error. It seems unlikely that hydro-operations played a significant part in the reduction of zooplankton in light of the relatively friendly water year of 1998.« less

Aerobic methane production in surface waters of the Gulf of Mexico

NASA Astrophysics Data System (ADS)

Finke, N.; Crespo-Medina, M.; Schweers, J.; Joye, S. B.

2011-12-01

Near surface water of the global oceans often show elevated methane concentrations compared to the water column below with concentrations in supersaturation in regard to the atmosphere (Lamontagne et al. 1973), resulting in a source of this potent greenhouse gas to the atmosphere. The mechanisms leading to methane supersaturation in surface waters remains unclear. Incubations with Trichodesmium-containing Pacific surface water suggested methylphosphonate as potential methane precursor under phosphate limiting conditions (Karl et al. 2008), whereas in phosphate rich Arctic surface waters, DMSP addition stimulated methane production (Damm et al. 2010). Surface waters of the Gulf of Mexico typically exhibit a methane maximum that is conincident with the deep chlorophyll maximum, below the depths where Trichodesmium is abundant. Addition of methylphosphonate, dimethylsulfoniopropionate (DMSP) or methane thiol (MeSH), the proposed methane precursor in DMSP conversion to methane, to oxic sea water did not affect methane production within the chlorophyll maximum at most stations, whereas methyl phosphonate addition stimulated methane production in the surface water and proposed deep Trichodesmium horizon. Pre-filtration of the water through a 10 μm sieve, which eliminated Trichodesmium, or through a 1.2 μm filter, which eliminated additional cyanobacteria such as Synechococcus, did not reduce methane production. Under dark oxic and dark anoxic conditions, however, methane production was reduced 5 and 7-20 fold, respectively, indicating that anerobic methane production in anoxic microniches is not responsible for the methane production. The reduction of methane production under dark conditions suggests that methane production is, in some yet unrecognized way, linked to phototrophic metabolism. Cyanobacteria are likely not responsible for the observed aerobic methane production in the surface waters of the Gulf of Mexico and while methylphosphonate is a potential precursor in the surface waters, the precursor and methanism of methane production within the coincident deep chlorophyll/methane maximum remains unknown. Lamontagne R, Swinnert J, Linnenbo V, Smith WD (1973) Methane concentrations in various marine environments. Journal of Geophysical Research 78, 5317-5324 Karl DM et al. (2008) Aerobic production of methane in the sea. Nature Geosciences 1, 473-478 Damm E et al. (2010) Methane production in aerobic oligotrophic surface water in the central Arctic Ocean. Biogeosciences 7, 1099-1108

Picophytoplankton physiology and the microbial loop

NASA Astrophysics Data System (ADS)

Stawiarski, Beate

2013-04-01

Physiological observations are needed for a better understanding of the complexity of marine ecosystem processes. This information is important for a better model formulation and parameterisation to identify the consequences of, and feedbacks to, global change and to make future projections. Picophytoplankton form the smallest component of the phytoplankton community (˜ 3μm) and show a substantial contribution to phytoplankton biomass in oligotrophic oceans. Here they also have an important function as primary producers in the microbial loop. They include cyanobacteria, represented by Prochlorococcus and Synechococcus, and picoeukaryotes. The aim of this project is to achieve a better representation of picophytoplankton in the global biogeochemical model PlankTOM 10. PlankTOM 10 simplifies the complex ecosystem into 10 conceptual groups also known as plankton functional types (PFTs). These groups of organisms are defined by physiological and biochemical parameters (6 of phytoplankton, 3 of zooplankton and 1 of bacteria). Furthermore, the question will be addressed, whether picophytoplankton are typical K-strategists with low minimum nutrient and high maximum chlorophyll quota relative to carbon, or by having superior nutrient uptake kinetics and light harvesting (high αChl). Laboratory experiments showed that the smaller picoprokaryotes respond faster to increasing light intensities than their picoeukaryotic counterpart. Preliminary data show that the initial slope of the photosynthesis vs. irradiance curve (αChl) of picoprokaryotes is about 1.5 times higher than of picoeukaryotes. This is consistent with their common distribution at the deep chlorophyll maximum. The maximum chlorophyll quota are not significantly different. Temperature experiments confirmed that the maximum growth rates of picophytoplankton at the optimum temperature (0.47 ± 0.17 d-1 for prokaryotes and 1.05 ± 0.47 d-1 for eukaryotes) are significantly lower than of diatoms (1.57 ± 0.73 d-1, Chollet et al. in prep.) and not significantly different from coccolithophores (0.68 ± 0.10 d-1, Buitenhuis et al. 2008), consistent with the characterisation of picophytoplanton as K-strategists. Their optimum temperatures were found to be 22.7 ± 2.0 ° C for prokaryotes and 23.6 ± 3.1 ° C for eukaryotes. Nutrient limitation experiments will be conducted to characterize the nutrient uptake and elemental composition of picophytoplankton. Finally the results of all experiments will then be used to improve the representation of picophytoplankton in PlankTOM10, evaluated against a recently compiled global database of picophytoplankton biomass.

PHYTOPLANKTON AND BIOMASS DISTRIBUTION AT POTENTIAL OTEC SITES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, P.W.; Horne, A.J.

1979-06-01

Net or large phytoplankton species composition and most phytoplankton abundance was measured at three OTEC sites. In the Gulf of Mexico and Hawaii, diatoms dominated while the blue-green algae Trichodesmium was most common at Puerto Rico. The species ratio of diatoms to dinoflagellates was approximately 1:1. The species diversity varied from site to site, Hawaii > Puerto Rico > Gulf of Mexico. Chlorophyll a, which is a measure of the pigment of all algae size ranges, showed a subsurface peak of 0.14-0.4 g per liter at 75 to 125 m. Occasional surface peaks up to 0.4 pg per liter occurred.more » Further refinement of collection techniques is needed to delineate the subtle environmental effects expected by OTEC plant discharges.« less

Phytoplankton and biomass distribution at potential OTEC sites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, P.W.; Horne, A.J.

1979-06-01

Net or large phytoplankton species composition and most phytoplankton abundance was measured at three OTEC sites. In the Gulf of Mexico and'Hawaii, diatoms dominated while the blue-green algae Trichodesmium was most common at Puerto Rico. The species ratio of diatoms to dinoflagellates was approximately 1:1. The species diversity varied from site to site, Hawaii > Puerto Rico > Gulf of Mexico. Chlorophyll a, which is a measure of the pigment of all algae size ranges, showed a subsurface peak of 0.14 to 0.4 g per liter at 75 to 125 m. Occasional surface peaks upto 0.4 ..mu..g per liter occurred.more » Further refinement of collection techniques is needed to delineate the subtle environmental effects expected by OTEC plant discharges.« less

Physical and biogeochemical variability in Todos Santos Bay, northwestern Baja California, derived from a numerical NPZD model

NASA Astrophysics Data System (ADS)

Cruz-Rico, Jorge; Rivas, David

2018-07-01

A physical-biogeochemical Nitrate-Phytoplankton-Zooplankton-Detritus (NPZD) numerical model is used to study the variability of coastal phytoplankton biomass in northwestern Baja California and the Todos Santos Bay (TSB), a region of high socioeconomic importance located in the southern California Current System. The model reproduces adequately the most important oceanographic features of the study area, like the coastal chlorophyll-a (Chl-a) maxima and thermal gradients in the regions of enhanced coastal upwelling. The variability of Chl-a in the TSB is influenced by the activity of El Niño-Southern Oscillation (ENSO) and decadal modes of the Pacific, e.g., the Pacific Decadal Oscillation (PDO) and the North Pacific Gyre Oscillation (NPGO). From de multi-year model simulation (2004-2011), this large-scale influence is remarkable in two contrasting anomalous years. The year 2006 was anomalously warm and with low Chl-a levels, associated with warm phases of ENSO and PDO and a weakening of the NPGO. These climatic anomalies caused a strong stratification and weak upwelling around the TSB, which induced a poor nutrient input into the Bay and a deep and weak subsurface Chl-a maximum (SCM) during summer. The year 2011, on the other hand, was a cold year with enhanced upwelling during the spring, associated with cold phases of ENSO and PDO and an intensification of the NPGO. These conditions also caused a weak stratification and an intense nutrient transport into the TSB and hence a shallower and stronger SCM.

Summer primary productivity and phytoplankton community composition driven by different hydrographic structures in the East/Japan Sea and the Western Subarctic Pacific

NASA Astrophysics Data System (ADS)

Kwak, Jung Hyun; Lee, Sang Heon; Hwang, Jeomshik; Suh, Young-Sang; Je Park, Hyun; Chang, Kyung-Il; Kim, Kyung-Ryul; Kang, Chang-Keun

2014-07-01

The East/Japan Sea (EJS) is a highly productive marginal sea in the northwest Pacific, consisting of three basins (Ulleung Basin: UB, Yamato Basin: YB, and Japan Basin: JB). To find causes of the reportedly high primary productivity in summer in the EJS, especially in the UB, we measured primary productivity, phytoplankton composition, and other environmental variables. The water column was strongly stratified in the EJS compared with the Western Subarctic Pacific (WSP). Integrated primary productivity was two times higher in the EJS (612 mg C m-2 d-1) than in the WSP (291 mg C m-2 d-1). The vertical distributions of physicochemical and biological factors confirmed that production in the subsurface chlorophyll maximum layer in the study regions was an important factor regulating primary productivity within the water column. While picoplankton (<2.7 µm) dominated in the WSP, JB, and YB, micro/nanoplankton (≥2.7 µm) dominated in the UB. Contribution by picoplankton to total biomass and primary productivity in the UB was significantly lower than in the other regions. CHEMTAX analysis using marker pigments showed that diverse phytoplankton groups inhabited the study regions. Cluster and canonical correspondence analyses showed high correlation between the spatial variation in phytoplankton assemblages with the water mass properties mainly represented by water temperature and nitrate concentration. Overall, our results suggest that the hydrographic structure of water column in the study region is an important controlling factor of the biomass and productivity of phytoplankton as well as their diversity in size and taxonomic groups.

Oceanographic structure drives the assembly processes of microbial eukaryotic communities

PubMed Central

Monier, Adam; Comte, Jérôme; Babin, Marcel; Forest, Alexandre; Matsuoka, Atsushi; Lovejoy, Connie

2015-01-01

Arctic Ocean microbial eukaryote phytoplankton form subsurface chlorophyll maximum (SCM), where much of the annual summer production occurs. This SCM is particularly persistent in the Western Arctic Ocean, which is strongly salinity stratified. The recent loss of multiyear sea ice and increased particulate-rich river discharge in the Arctic Ocean results in a greater volume of fresher water that may displace nutrient-rich saltier waters to deeper depths and decrease light penetration in areas affected by river discharge. Here, we surveyed microbial eukaryotic assemblages in the surface waters, and within and below the SCM. In most samples, we detected the pronounced SCM that usually occurs at the interface of the upper mixed layer and Pacific Summer Water (PSW). Poorly developed SCM was seen under two conditions, one above PSW and associated with a downwelling eddy, and the second in a region influenced by the Mackenzie River plume. Four phylogenetically distinct communities were identified: surface, pronounced SCM, weak SCM and a deeper community just below the SCM. Distance–decay relationships and phylogenetic structure suggested distinct ecological processes operating within these communities. In the pronounced SCM, picophytoplanktons were prevalent and community assembly was attributed to water mass history. In contrast, environmental filtering impacted the composition of the weak SCM communities, where heterotrophic Picozoa were more numerous. These results imply that displacement of Pacific waters to greater depth and increased terrigenous input may act as a control on SCM development and result in lower net summer primary production with a more heterotroph dominated eukaryotic microbial community. PMID:25325383

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities

PubMed Central

Dupont, Chris L; McCrow, John P; Valas, Ruben; Moustafa, Ahmed; Walworth, Nathan; Goodenough, Ursula; Roth, Robyn; Hogle, Shane L; Bai, Jing; Johnson, Zackary I; Mann, Elizabeth; Palenik, Brian; Barbeau, Katherine A; Craig Venter, J; Allen, Andrew E

2015-01-01

Transitions in community genomic features and biogeochemical processes were examined in surface and subsurface chlorophyll maximum (SCM) microbial communities across a trophic gradient from mesotrophic waters near San Diego, California to the oligotrophic Pacific. Transect end points contrasted in thermocline depth, rates of nitrogen and CO2 uptake, new production and SCM light intensity. Relative to surface waters, bacterial SCM communities displayed greater genetic diversity and enrichment in putative sulfur oxidizers, multiple actinomycetes, low-light-adapted Prochlorococcus and cell-associated viruses. Metagenomic coverage was not correlated with transcriptional activity for several key taxa within Bacteria. Low-light-adapted Prochlorococcus, Synechococcus, and low abundance gamma-proteobacteria enriched in the>3.0-μm size fraction contributed disproportionally to global transcription. The abundance of these groups also correlated with community functions, such as primary production or nitrate uptake. In contrast, many of the most abundant bacterioplankton, including SAR11, SAR86, SAR112 and high-light-adapted Prochlorococcus, exhibited low levels of transcriptional activity and were uncorrelated with rate processes. Eukaryotes such as Haptophytes and non-photosynthetic Aveolates were prevalent in surface samples while Mamielles and Pelagophytes dominated the SCM. Metatranscriptomes generated with ribosomal RNA-depleted mRNA (total mRNA) coupled to in vitro polyadenylation compared with polyA-enriched mRNA revealed a trade-off in detection eukaryotic organelle and eukaryotic nuclear origin transcripts, respectively. Gene expression profiles of SCM eukaryote populations, highly similar in sequence identity to the model pelagophyte Pelagomonas sp. CCMP1756, suggest that pelagophytes are responsible for a majority of nitrate assimilation within the SCM. PMID:25333462

Upper ocean climate of the Eastern Mediterranean Sea during the Holocene Insolation Maximum - a model study

NASA Astrophysics Data System (ADS)

Adloff, F.; Mikolajewicz, U.; Kucera, M.; Grimm, R.; Maier-Reimer, E.; Schmiedl, G.; Emeis, K.

2011-05-01

Nine thousand years ago, the Northern Hemisphere experienced enhanced seasonality caused by an orbital configuration with a minimum of the precession index. To assess the impact of the "Holocene Insolation Maximum" (HIM) on the Mediterranean Sea, we use a regional ocean general circulation model forced by atmospheric input derived from global simulations. A stronger seasonal cycle is simulated in the model, which shows a relatively homogeneous winter cooling and a summer warming with well-defined spatial patterns, in particular a subsurface warming in the Cretan and Western Levantine areas. The comparison between the SST simulated for the HIM and the reconstructions from planktonic foraminifera transfer functions shows a poor agreement, especially for summer, when the vertical temperature gradient is strong. However, a reinterpretation of the reconstructions is proposed, to consider the conditions throughout the upper water column. Such a depth-integrated approach accounts for the vertical range of preferred habitat depths of the foraminifera used for the reconstructions and strongly improves the agreement between modelled and reconstructed temperature signal. The subsurface warming is recorded by both model and proxies, with a light shift to the south in the model results. The mechanisms responsible for the peculiar subsurface pattern are found to be a combination of enhanced downwelling and wind mixing due to strengthened Etesian winds, and enhanced thermal forcing due to the stronger summer insolation in the Northern Hemisphere. Together, these processes induce a stronger heat transfer from the surface to the subsurface during late summer in the Western Levantine; this leads to an enhanced heat piracy in this region.

Detection of surface algal blooms using the newly developed algorithm surface algal bloom index (SABI)

NASA Astrophysics Data System (ADS)

Alawadi, Fahad

2010-10-01

Quantifying ocean colour properties has evolved over the past two decades from being able to merely detect their biological activity to the ability to estimate chlorophyll concentration using optical satellite sensors like MODIS and MERIS. The production of chlorophyll spatial distribution maps is a good indicator of plankton biomass (primary production) and is useful for the tracing of oceanographic currents, jets and blooms, including harmful algal blooms (HABs). Depending on the type of HABs involved and the environmental conditions, if their concentration rises above a critical threshold, it can impact the flora and fauna of the aquatic habitat through the introduction of the so called "red tide" phenomenon. The estimation of chlorophyll concentration is derived from quantifying the spectral relationship between the blue and the green bands reflected from the water column. This spectral relationship is employed in the standard ocean colour chlorophyll-a (Chlor-a) product, but is incapable of detecting certain macro-algal species that float near to or at the water surface in the form of dense filaments or mats. The ability to accurately identify algal formations that sometimes appear as oil spill look-alikes in satellite imagery, contributes towards the reduction of false-positive incidents arising from oil spill monitoring operations. Such algal formations that occur in relatively high concentrations may experience, as in land vegetation, what is known as the "red-edge" effect. This phenomena occurs at the highest reflectance slope between the maximum absorption in the red due to the surrounding ocean water and the maximum reflectance in the infra-red due to the photosynthetic pigments present in the surface algae. A new algorithm termed the surface algal bloom index (SABI), has been proposed to delineate the spatial distributions of floating micro-algal species like for example cyanobacteria or exposed inter-tidal vegetation like seagrass. This algorithm was specifically modelled to adapt to the marine habitat through its inclusion of ocean-colour sensitive bands in a four-band ratio-based relationship. The algorithm has demonstrated high stability against various environmental conditions like aerosol and sun glint.

Marine Primary Aerosol in the Mediterranean atmosphere: physical and chemical properties from a mesocosm study

NASA Astrophysics Data System (ADS)

D'anna, B.; Sellegri, K.; Charriere, B.; Sempere, R.; Mas, S.; George, C.; Meme, A.; R'Mili, B.; Schwier, A. N.; Rose, C.

2013-12-01

The Mediterranean Sea is a special marine environment characterized by low biological activity and high anthropogenic pressure. It is often difficult to discriminated the contribution of Primary Sea Salt Aerosol (SSA) formed at the sea-air interface from background level of the aerosol. An alternative tool to study the sea-air exchanges in a controlled environment is provided by the mesocosms, which represent an important link between field studies and laboratory experiments. A mesocosms experiment was performed in May 2013 at the Oceanographic and Marine Station STARESO in Western Corsica. Three mesocosms were simultaneously filled with pooled and screened (<1000 μm) subsurface (1 m) seawater from the Bay. Each mesocosm had a maximum water column depth of 2 m and contained 2260 L of Bay water and covered with transparent (teflon film) dome to prevent atmospheric contamination. The three mesocosms were equipped with a pack of optical and physicochemical sensors and received different treatements: one was left unchanged as control and two were enriched by addition of nitrates and phosphates respecting Redfield ration (N:P = 16). The evolution of the three systems was followed for 20 days. A set of sensors in each mesocosm were established at 0.5 m and allowed to monitor at high frequency (every 2 min): water temperature, conductivity, pH, incident light, fluorescence of chlorophyll a and dissolved oxygen concentration. The mesocosms waters were daily sampled for chemical (dissolved oxygen, colored dissolved organic matter, nitrates, phosphates, silicates, transparent polyssacharides, dicarboxylic acids and related polar compounds) and biological (chlorophyll a, virus, phytoplankton and zooplankton concentration) analyses. Finally, few liters of sea-water from each mesocosms were sampled daily and immediately transferred to a bubble-bursting apparatus to simulate SSA. Size distribution and particle number were followed by SMPS and APS in the range of 10nm to 10μm. The hygroscopic properties were investigated by a CCN device. On-line chemical analysis of the sub-micrometer fraction was performed by a c-TOF-AMS. Off-line analysis of the SSA generated included TEM-EDX , LC-MS and IC, Thermo-optical analysis of EC-OC. The objective of the present study is to investigate the influence of water chemical and biological composition and biological activity on physical and chemical properties of the primary generated aerosol.

Phytomonitoring of air pollution around a thermal power plant

NASA Astrophysics Data System (ADS)

Agrawal, M.; Agrawal, S. B.

This study was undertaken in order to assess the impact of air pollutants on vegetation around Obra thermal power plant (1550 M W capacity) in the Mirzapur district of Uttar Pradesh. For this purpose, Mangifera indica, Citrus medico and Bouganvillaea spectabilis plants, most common at all sites, were selected as test plants. Five study sites were selected northeast (prevailing wind) of the thermal power plant. A control site was also selected at a distance of 30 km north of Obra. Responses of plants to pollutants in terms of presence of foliar injury symptoms and changes in chlorophyll, ascorbic acid and S content were measured. These changes were correlated with ambient SO 2 and suspended particulate matter (SPM) concentrations and the amount of dust settled on leaf surfaces. The SO 2 and SPM concentrations were quite high in the immediate vicinity of the power plant. There also exists a direct relationship between the concentration of SPM in air and amount of dust deposited on leaf surfaces. Maximum dust deposition was observed on M. indica plants. The levels of foliar injury, chlorophyll and ascorbic acid were found to decrease and that of S increase in plants around the power plant in comparison to those growing at a control site. The magnitude of such changes was maximum in M. indica and minimum in C. medica. A species specific direct relationship between the increase in the amount of S and decrease in chlorophyll content was observed. The study suggests that differential sensitivity of plants to SO 2 may be used in evaluating the air pollution impact around emission sources and M. indica plants can be used as an indicator plant for quantifying biological changes.

Impact of elevated temperatures on specific leaf weight, stomatal density, photosynthesis and chlorophyll fluorescence in soybean.

PubMed

Jumrani, Kanchan; Bhatia, Virender Singh; Pandey, Govind Prakash

2017-03-01

High-temperature stress is a major environmental stress and there are limited studies elucidating its impact on soybean (Glycine max L. Merril.). The objectives of present study were to quantify the effect of high temperature on changes in leaf thickness, number of stomata on adaxial and abaxial leaf surfaces, gas exchange, chlorophyll fluorescence parameters and seed yield in soybean. Twelve soybean genotypes were grown at day/night temperatures of 30/22, 34/24, 38/26 and 42/28 °C with an average temperature of 26, 29, 32 and 35 °C, respectively, under greenhouse conditions. One set was also grown under ambient temperature conditions where crop season average maximum, minimum and mean temperatures were 28.0, 22.4 and 25.2 °C, respectively. Significant negative effect of temperature was observed on specific leaf weight (SLW) and leaf thickness. Rate of photosynthesis, stomatal conductance and water use efficiency declined as the growing temperatures increased; whereas, intercellular CO 2 and transpiration rate were increased. With the increase in temperature chlorophyll fluorescence parameters such as Fv/Fm, qP and PhiPSII declined while there was increase in qN. Number of stomata on both abaxial and adaxial surface of leaf increased significantly with increase in temperatures. The rate of photosynthesis, PhiPSII, qP and SPAD values were positively associated with leaf thickness and SLW. This indicated that reduction in photosynthesis and associated parameters appears to be due to structural changes observed at higher temperatures. The average seed yield was maximum (13.2 g/pl) in plants grown under ambient temperature condition and declined by 8, 14, 51 and 65% as the temperature was increased to 30/22, 34/24, 38/26 and 42/28 °C, respectively.

The biological pump: Profiles of plankton production and consumption in the upper ocean

NASA Astrophysics Data System (ADS)

Longhurst, Alan R.; Glen Harrison, W.

The ‘biological pump’ mediates flux of carbon to the interior of the ocean by interctions between the components of the vertically-structured pelagic ecosystem of the photic zone. Chlorophyll profiles are not a simple indicator of autotrophic biomass or production, because of non-linearities in the physiology of cells and preferential vertical distribution of taxa. Profiles of numbers or biomass of heterotrophs do not correspond with profiles of consumption, because of depth-selection (taxa, seasons) for reasons unconnected with feeding. Depths of highest plant biomass, chlorophyll and growth rate coincide when these depths are shallow, but become progressively separated in profiles where they are deeper - so that highest growth rate lies progressively shallower than the chloropyll maximum. It is still uncertain how plant biomass is distributed in deep profiles. Depths of greatest heterotroph biomass (mesozooplankton) are usually close to depths of fastest plant growth rate, and thus lie shallower than the chlorophyll maximum in profiles where this itself is deep. This correlation is functional, and relates to the role of heterotrophs in excreting metabolic wastes (especially ammonia), which may fuel a significant component of integrated algal production, especially in the oligotrophic ocean. Some, but not all faecal material from mesozooplankton of the photic zone appears in vertical flux below the pycnocine, depending on the size of the source organisms, and the degree of vertical mixing above the pycnocline. Diel, but probably not seasonal, vertical migration is significant in the vertical flux of dissolved nitrogen. Regional generalisations of the vertical relations of the main components of the ‘biological pump’ now appear within reach, and an approach is suggested.

The Gulf of Aden Intermediate Water Intrusion Regulates the Southern Red Sea Summer Phytoplankton Blooms

PubMed Central

Dreano, Denis; Raitsos, Dionysios E.; Gittings, John; Krokos, George; Hoteit, Ibrahim

2016-01-01

Knowledge on large-scale biological processes in the southern Red Sea is relatively limited, primarily due to the scarce in situ, and satellite-derived chlorophyll-a (Chl-a) datasets. During summer, adverse atmospheric conditions in the southern Red Sea (haze and clouds) have long severely limited the retrieval of satellite ocean colour observations. Recently, a new merged ocean colour product developed by the European Space Agency (ESA)—the Ocean Color Climate Change Initiative (OC-CCI)—has substantially improved the southern Red Sea coverage of Chl-a, allowing the discovery of unexpected intense summer blooms. Here we provide the first detailed description of their spatiotemporal distribution and report the mechanisms regulating them. During summer, the monsoon-driven wind reversal modifies the circulation dynamics at the Bab-el-Mandeb strait, leading to a subsurface influx of colder, fresher, nutrient-rich water from the Indian Ocean. Using satellite observations, model simulation outputs, and in situ datasets, we track the pathway of this intrusion into the extensive shallow areas and coral reef complexes along the basin’s shores. We also provide statistical evidence that the subsurface intrusion plays a key role in the development of the southern Red Sea phytoplankton blooms. PMID:28006006

Subsurface phytoplankton layers in the Arctic Ocean

NASA Astrophysics Data System (ADS)

Tremblay, J. E.

2016-02-01

Recent observations underscored the near-ubiquitous presence of subsurface chlorophyll maxima (SCM) and their potential importance for total primary production (PP) and pelagic food webs in perennially stratified waters of the Arctic Ocean. The contribution of SCM layers to annual PP is particularly important in oligotrophic areas, where modest nutrient supply to the upper euphotic zone results in weak or short-lived phytoplankton blooms near the surface. The large amount of nutrients present in the Pacific halocline relative to comparable depths in the Atlantic sector of the Arctic may also foster particularly productive SCM along the path of Pacific water. The association between strongly stratified conditions and the SCM in today's Arctic Ocean has broad relevance in providing a glimpse into the future of other oceans whose vertical stratification progressively rises with water temperature and freshwater content. In this regard, there is much to learn on the photosynthetic and nutritive ecology of SCM layers, whose biogeochemical significance depends on the extent to which they rely on allochthonous nitrogen (new production), their contribution to carbon biomass and their ability to influence air-sea CO2 exchange. Here we report on several years of eco-physiological investigations of SCM across the Arctic Ocean, with an aim to provide a basis of comparison with the ecology of SCM in other ocean areas.

The optical and physiological properties of phytoplankton - base of model for estimation of primary production in the sea from satellite data.

NASA Astrophysics Data System (ADS)

Finenko, Z. Z.; Churilova, T. Ya.

An assessment of the spatial and temporal variation in the photo physiological parameters and chlorophyll-specific absorption coefficients of marine phytoplankton is essential for estimate of global primary production by satellite data. Relationships of photosynthesis rate on light intensity have been used for estimation of two photosynthetic parameters of phytoplankton in the Black Sea: light saturated photosynthesis intensity (Pb/max, mgC mg Chl-1 h-1) and photosynthesis efficiency (alpha/b mgC mg Chl -1 h-1/ W m-2). The results have shown that variability of photosynthetic parameters of surface phytoplankton during the year varied by one order of values: Pb/max - from 1 to 11 mg C mg Chl-1 h-1 and (alpha/b - from 0.04 to 0.35 mg C mg Chl-1 h-1/Wm-2. Temporal dynamics was characterised by increasing of the values from winter to summer and decreasing to the end of the year. The vertical profiles of Pb/max and alpha/b had opposite character of change: values of Pb/max decreased with depth, alpha/b - increased. Photosynthetic parameters changed with depth more significantly at time of stratification, than - without stratification. The influence of temperature, nitrate concentration and light intensity on Pb/max rather evidence, but temperature and optical depth effect on Pb/max more significantly. Depth-dependent variability of photosynthesis efficiency is generally effected of nutrient concentration. Vertical uniformity of maximum quantum yield of photosynthesis (Fm) and spectral mean absorption coefficient of phytoplankton (aph) in euphotic zone were obtained for cold period of year. In summer - Fm increased from surface to bottom of euphotic zone, aph - decrease. Fm and aph values of surface phytoplankton depended on chlorophyll concentration but their changes had opposite direction: Fm - increased and aph - decreased when chlorophyll concentration grew. As a result Pb/max = Z Fm aph Ik T and alpha/b = Z Fm aph T (where Z - a dimensional constant equal to the atomic mass of carbon, Ik - the photon flux density at which photosynthesis rate becomes light saturated, (mol photons m-2 s-1; T - a constant value for transition from seconds by one hour) change in 2-3 times for the range of chlorophyll concentration (0.05-10.0 mg m-3 ). Pb/max and alpha/b have been approximated by one-peaked curve with maximum at 3 mg m -3 Chl a concentration. These relationships could be used for modeling of Pb/max and alpha/b based on surface chlorophyll concentrations from satellite colour images.

[Investigation of exciting light and plant leaves age effects on chlorophyll fluorescense of radish plants].

PubMed

Nesterenko, T V; Tikhomirov, A A; Shikhov, V N

2012-01-01

The effect of exciting light intensity and leaves age on characteristics of slow stage of chlorophyll fluorescence induction (CFI) of radish leaves has been investigated. Light dependence of the relationship of maximum fluorescence intensity in the peak P and the stationary fluorescence level (F(P)/F(S)) and also light dependence of temporal characteristics of CFI (T0.5 - half decrease of chlorophyll fluorescence intensity during slow stage of fluorescence induction and tmin - summarized CFI characteristics derived by calculating via integral proportional to variable part of illuminated in the result of chlorophyll fluorescence energy during slow stage of CFI) have been studied. Plants were grown in controlled conditions of light culture at 100 Wt/m2 of photosynthetic active radiation (PAR). It has been shown that variability of the characteristics under study, associated with the effect of leaves age, significantly decreases at exciting light intensity equal to 40 Wt/m2 of PAR and more. The lowest effect of leaves age on the value of fluorescence characteristics for T0.5 and tmin and also for F(P)/F(S) ratio was observed at the intensity of exciting fluorescence light of 60 Wt/m2 of PAR. In the researched range of light intensities the temporal characteristics of T0.5 and tmin for uneven-aged radish leaves appeared to be by an order less responsive to the intensity changes of exciting fluorescence light as compared with F(P)/F(S) ratio.

Biomonitoring chromium III or VI soluble pollution by moss chlorophyll fluorescence.

PubMed

Chen, Yang-Er; Mao, Hao-Tian; Ma, Jie; Wu, Nan; Zhang, Chao-Ming; Su, Yan-Qiu; Zhang, Zhong-Wei; Yuan, Ming; Zhang, Huai-Yu; Zeng, Xian-Yin; Yuan, Shu

2018-03-01

We systematically compared the impacts of four Cr salts (chromic chloride, chromic nitrate, potassium chromate and potassium bichromate) on physiological parameters and chlorophyll fluorescence in indigenous moss Taxiphyllum taxirameum. Among the four Cr salts, K 2 Cr 2 O 7 treatment resulted in the most significant decrease in photosynthetic efficiency and antioxidant enzymes, increase in reactive oxygen species (ROS), and obvious cell death. Different form the higher plants, although hexavalent Cr(VI) salt treatments resulted in higher accumulation levels of Cr and were more toxic than Cr(III) salts, Cr(III) also induced significant changes in moss physiological parameters and chlorophyll fluorescence. Our results showed that Cr(III) and Cr(VI) could be monitored distinguishably according to the non-photochemical quenching (NPQ) fluorescence of sporadic purple and sporadic lavender images respectively. Then, the valence states and concentrations of Cr contaminations could be evaluated according to the image of maximum efficiency of PSII photochemistry (Fv/Fm) and the quantum yield of PSII electron transport (ΦPSII). Therefore, this study provides new ideas of moss's sensibility to Cr(III) and a new method to monitor Chromium contaminations rapidly and non-invasively in water. Copyright © 2017 Elsevier Ltd. All rights reserved.

Water-quality conditions near the confluence of the Snake and Boise Rivers, Canyon County, Idaho

USGS Publications Warehouse

Wood, Molly S.; Etheridge, Alexandra

2011-01-01

Total Maximum Daily Loads (TMDLs) have been established under authority of the Federal Clean Water Act for the Snake River-Hells Canyon reach, on the border of Idaho and Oregon, to improve water quality and preserve beneficial uses such as public consumption, recreation, and aquatic habitat. The TMDL sets targets for seasonal average and annual maximum concentrations of chlorophyll-a at 14 and 30 micrograms per liter, respectively. To attain these conditions, the maximum total phosphorus concentration at the mouth of the Boise River in Idaho, a tributary to the Snake River, has been set at 0.07 milligrams per liter. However, interactions among chlorophyll-a, nutrients, and other key water-quality parameters that may affect beneficial uses in the Snake and Boise Rivers are unknown. In addition, contributions of nutrients and chlorophyll-a loads from the Boise River to the Snake River have not been fully characterized. To evaluate seasonal trends and relations among nutrients and other water-quality parameters in the Boise and Snake Rivers, a comprehensive monitoring program was conducted near their confluence in water years (WY) 2009 and 2010. The study also provided information on the relative contribution of nutrient and sediment loads from the Boise River to the Snake River, which has an effect on water-quality conditions in downstream reservoirs. State and site-specific water-quality standards, in addition to those that relate to the Snake River-Hells Canyon TMDL, have been established to protect beneficial uses in both rivers. Measured water-quality conditions in WY2009 and WY2010 exceeded these targets at one or more sites for the following constituents: water temperature, total phosphorus concentrations, total phosphorus loads, dissolved oxygen concentration, pH, and chlorophyll-a concentrations (WY2009 only). All measured total phosphorus concentrations in the Boise River near Parma exceeded the seasonal target of 0.07 milligram per liter. Data collected during the study show seasonal differences in all measured parameters. In particular, surprisingly high concentrations of chlorophyll-a were measured at all three main study sites in winter and early spring, likely due to changes in algal populations. Discharge conditions and dissolved orthophosphorus concentrations are key drivers for chlorophyll-a on a seasonal and annual basis on the Snake River. Discharge conditions and upstream periphyton growth are most likely the key drivers for chlorophyll-a in the Boise River. Phytoplankton growth is not limited or driven by nutrient availability in the Boise River. Lower discharges and minimal substrate disturbance in WY2010 in comparison with WY2009 may have caused prolonged and increased periphyton and macrophyte growth and a reduced amount of sloughed algae in suspension in the summer of WY2010. Chlorophyll-a measured in samples commonly is used as an indicator of sestonic algae biomass, but chlorophyll-a concentrations and fluorescence may not be the most appropriate surrogates for algae growth, eutrophication, and associated effects on beneficial uses. Assessment of the effects of algae growth on beneficial uses should evaluate not only sestonic algae, but also benthic algae and macrophytes. Alternatively, continuous monitoring of dissolved oxygen detects the influence of aquatic plant respiration for all types of algae and macrophytes and is likely a more direct measure of effects on beneficial uses such as aquatic habitat. Most measured water-quality parameters in the Snake River were statistically different upstream and downstream of the confluence with the Boise River. Higher concentrations and loads were measured at the downstream site (Snake River at Nyssa) than the upstream site (Snake River near Adrian) for total phosphorus, dissolved orthophosphorus, total nitrogen, dissolved nitrite and nitrate, suspended sediment, and turbidity. Higher dissolved oxygen concentrations and pH were measured at the upstream site (Snake River near Adrian) than the downstream site (Snake River at Nyssa). Contributions from the Boise River measured at Parma do not constitute all of the increase in nutrient and sediment loads in the Snake River between the upstream and downstream sites. Surrogate models were developed using a combination of continuously monitored variables to estimate concentrations of nutrients and suspended sediment when samples were not possible. The surrogate models explained from 66 to 95 percent of the variability in nutrient and suspended sediment concentrations, depending on the site and model. Although the surrogate models could not always represent event-based changes in modeled parameters, they generally were successful in representing seasonal and annual patterns. Over a longer period, the surrogate models could be a useful tool for measuring compliance with state and site-specific water-quality standards and TMDL targets, for representing daily and seasonal variability in constituents, and for assessing effects of phosphorus reduction measures within the watershed.

Biomass and productivity of three phytoplankton size classes in San Francisco Bay.

USGS Publications Warehouse

Cole, B.E.; Cloern, J.E.; Alpine, A.E.

1986-01-01

The 5-22 mu m size accounted for 40-50% of annual production in each embayment, but production by phytoplanton >22 mu m ranged from 26% in the S reach to 54% of total phytoplankton production in the landward embayment of the N reach. A productivity index is derived that predicts daily productivity for each size class as a function of ambient irradiance and integrated chlorophyll a in the photic zone. For the whole phytoplankton community and for each size class, this index was constant at approx= 0.76 g C m-2 (g chlorophyll a Einstein)-1. The annual means of maximum carbon assimilation numbers were usually similar for the three size classes. Spatial and temporal variations in size-fractionated productivity are primarily due to differences in biomass rather than size-dependent carbon assimilation rates. -from Authors

Ultrasound-assisted extraction of bioactive compounds from lemon balm and peppermint leaves

NASA Astrophysics Data System (ADS)

Šic Žlabur, Jana; Voća, Sandra; Dobričević, Nadica; Pliestić, Stjepan; Galić, Ante; Boričević, Ana; Borić, Nataša

2016-01-01

The aim of this study was to investigate the influence of conventional and ultrasound-assisted extraction (frequency, time, temperature) on the content of bioactive compounds as well as on the antioxidant activity of aqueous extracts from fresh lemon balm and peppermint leaves. Total phenols, flavonoids, non-flavonoids, total chlorophylls, total carotenoids, and radical scavenging capacity were determined. Moreover, the relationship between bioactive compounds and antioxidant capacity was studied by linear regression. A significant increase in all studied bioactive compounds during ultrasonic extraction for 5 to 20 min was found. With the classical extraction method, the highest amounts of total phenols, flavonoids, and antioxidant activity were determined, and the maximum amounts of total chlorophylls and carotenoids were determined during 20 min ultrasonic extraction. The correlation analysis revealed a strong, positive relationship between antioxidant activity and total phenolic compounds.

Impact of change in climate and policy from 1988 to 2007 on environmental and microbial variables at the time series station Boknis Eck, Baltic Sea

NASA Astrophysics Data System (ADS)

Hoppe, H.-G.; Giesenhagen, H. C.; Koppe, R.; Hansen, H.-P.; Gocke, K.

2013-07-01

Phytoplankton and bacteria are sensitive indicators of environmental change. The temporal development of these key organisms was monitored from 1988 to the end of 2007 at the time series station Boknis Eck in the western Baltic Sea. This period was characterized by the adaption of the Baltic Sea ecosystem to changes in the environmental conditions caused by the conversion of the political system in the southern and eastern border states, accompanied by the general effects of global climate change. Measured variables were chlorophyll, primary production, bacteria number, -biomass and -production, glucose turnover rate, macro-nutrients, pH, temperature and salinity. Negative trends with time were recorded for chlorophyll, bacteria number, bacterial biomass and bacterial production, nitrate, ammonia, phosphate, silicate, oxygen and salinity while temperature, pH, and the ratio between bacteria numbers and chlorophyll increased. Strongest reductions with time occurred for the annual maximum values, e.g. for chlorophyll during the spring bloom or for nitrate during winter, while the annual minimum values remained more stable. In deep water above sediment the negative trends of oxygen, nitrate, phosphate and bacterial variables as well as the positive trend of temperature were similar to those in the surface while the trends of salinity, ammonia and silicate were opposite to those in the surface. Decreasing oxygen, even in the surface layer, was of particular interest because it suggested enhanced recycling of nutrients from the deep hypoxic zones to the surface by vertical mixing. The long-term seasonal patterns of all variables correlated positively with temperature, except chlorophyll and salinity. Salinity correlated negatively with all bacterial variables (as well as precipitation) and positively with chlorophyll. Surprisingly, bacterial variables did not correlate with chlorophyll, which may be inherent with the time lag between the peaks of phytoplankton and bacteria during spring. Compared to the 20-yr averages of the environmental and microbial variables, the strongest negative deviations of corresponding annual averages were measured about ten years after political change for nitrate and bacterial secondary production (~ -60%), followed by chlorophyll (-50%) and bacterial biomass (-40%). Considering the circulation of surface currents in the Baltic Sea we interpret the observed patterns of the microbial variables at the Boknis Eck time series station as a consequence of the improved management of water resources after 1989 and - to a minor extent - the trends of the climate variables salinity and temperature.

Impact of change in climate and policy from 1988 to 2007 on environmental and microbial variables at the time series station Boknis Eck, Baltic Sea

NASA Astrophysics Data System (ADS)

Hoppe, H.-G.; Giesenhagen, H. C.; Koppe, R.; Hansen, H.-P.; Gocke, K.

2012-12-01

Phytoplankton and bacteria are sensitive indicators of environmental change. The temporal development of these key organisms was monitored from 1988 to the end of 2007 at the time series station Boknis Eck in the Western Baltic Sea. This period was characterized by the adaption of the Baltic Sea ecosystem to changes in the environmental conditions caused by the collapse and conversion of the political system in the Southern and Eastern Border States, accompanied by the general effects of global climate change. Measured variables were chlorophyll, primary production, bacteria number, -biomass and -production, glucose turnover rate, macro-nutrients, pH, temperature and salinity. Negative trends with time were recorded for chlorophyll, the bacterial variables, nitrate, ammonia, phosphate, silicate, oxygen and salinity while temperature, pH, and the ratio between bacteria numbers and chlorophyll increased. The strongest reductions with time occurred for the annual maximum values, e.g. for chlorophyll during the spring bloom or for nitrate during winter, while the annual minimum values remained more stable. In deep water above sediment the negative trends of oxygen, nitrate, phosphate and bacterial variables as well as the positive trend of temperature were similar to those in the surface while the trends of salinity, ammonia and silicate were opposite to those in the surface. Decreasing oxygen even in the surface layer was of particular interest because it suggested enhanced recycling of nutrients from the deep hypoxic zones to the surface by vertical mixing. In the long run all variables correlated positively with temperature, except chlorophyll and salinity. Salinity correlated negatively with all bacterial variables as well as precipitation and positively with chlorophyll. Surprisingly, bacterial variables did not correlate with chlorophyll which may be inherent with the time lag between the peaks of phytoplankton and bacteria during spring. Compared to the 20-yr averages of the environmental and microbial variables, the strongest negative deviations of corresponding annual averages were measured about ten years after political change for nitrate and bacterial secondary production (~ -60%), followed by chlorophyll (-50%) and bacterial biomass (-40%). Considering the circulation of surface currents in the Baltic Sea we conclude that the improved management of water resources after 1989 together with the trends of the climate variables salinity and temperature were responsible for the observed patterns of the microbial variables at the Boknis Eck time series station.

Subsurface associations of Acaryochloris-related picocyanobacteria with oil-utilizing bacteria in the Arabian Gulf water body: promising consortia in oil sediment bioremediation.

PubMed

Al-Bader, Dhia; Eliyas, Mohamed; Rayan, Rihab; Radwan, Samir

2013-04-01

Two picocyanobacterial strains related to Acaryochloris were isolated from the Arabian Gulf, 3 m below the water surface, one from the north shore and the other from the south shore of Kuwait. Both strains were morphologically, ultrastructurally, and albeit to a less extend, phylogenetically similar to Acaryochloris. However, both isolates lacked chlorophyll d and produced instead chlorophyll a, as the major photosynthetic pigment. Both picocyanobacterial isolates were associated with oil-utilizing bacteria in the magnitude of 10(5) cells g(-1). According to their 16S rRNA gene sequences, bacteria associated with the isolate from the north were affiliated to Paenibacillus sp., Bacillus pumilus, and Marinobacter aquaeolei, but those associated with the isolate from the south were affiliated to Bacillus asahii and Alcanivorax jadensis. These bacterial differences were probably due to environmental variations. In batch cultures, the bacterial consortia in the nonaxenic biomass as well as the pure bacterial isolates effectively consumed crude oil and pure aliphatic and aromatic hydrocarbons, including very high-molecular-weight compounds. Water and diethylether extracts from the phototrophic biomass enhanced growth of individual bacterial isolates and their hydrocarbon-consumption potential in batch cultures. It was concluded that these consortia could be promising in bioremediation of hydrocarbon pollutants, especially heavy sediments in the marine ecosystem.

The distribution of nutrients, dissolved oxygen and chlorophyll a in the upper Gulf of Nicoya, Costa Rica, a tropical estuary.

PubMed

Palter, Jaime; Coto, Sandra León; Ballestero, Daniel

2007-06-01

In the Gulf of Nicoya on the Pacific Coast of Costa Rica, nutrient rich equatorial subsurface water (ESW) is upwelled in much of the lower gulf. These offshore waters are often regarded as the major source of nutrients to the gulf. However, for most of the year, the ESW has little influence on the nutrient content of the upper gulf, which has a distinct character from the lower gulf. The upper gulf, extending 40 km north of the restriction between Puntarenas Peninsula and San Lucas Island, is bordered primarily by mangrove swamps, is less than 20 m deep, and is less saline than the lower gulf. We surveyed the upper gulf for dissolved inorganic nitrogen, phosphate, silicate, dissolved oxygen, and chlorophyll in November 2000, January and July 2001. All nutrients are more concentrated in the upper gulf during the rainy and transitional seasons than the dry season, significantly so for phosphate and silicate. Throughout the year, nutrients tend to be much more concentrated in the less saline water of the upper gulf. This trend indicates that discharge from the Tempisque River predominantly controls spatial and temporal nutrient variability in the upper gulf. However, nutrient rich ESW, upwelled offshore and mixed to form a mid-temperature intermediate water, may enter the inner gulf to provide an important secondary source of nutrients during the dry season.

Photosynthetic oxygen production in a warmer ocean: the Sargasso Sea as a case study.

PubMed

Richardson, Katherine; Bendtsen, Jørgen

2017-09-13

Photosynthetic O 2 production can be an important source of oxygen in sub-surface ocean waters especially in permanently stratified oligotrophic regions of the ocean where O 2 produced in deep chlorophyll maxima (DCM) is not likely to be outgassed. Today, permanently stratified regions extend across approximately 40% of the global ocean and their extent is expected to increase in a warmer ocean. Thus, predicting future ocean oxygen conditions requires a better understanding of the potential response of photosynthetic oxygen production to a warmer ocean. Based on our own and published observations of water column processes in oligotrophic regions, we develop a one-dimensional water column model describing photosynthetic oxygen production in the Sargasso Sea to quantify the importance of photosynthesis for the downward flux of O 2 and examine how it may be influenced in a warmer ocean. Photosynthesis is driven in the model by vertical mixing of nutrients (including eddy-induced mixing) and diazotrophy and is found to substantially increase the downward O 2 flux relative to physical-chemical processes alone. Warming (2°C) surface waters does not significantly change oxygen production at the DCM. Nor does a 15% increase in re-mineralization rate (assuming Q 10  = 2; 2°C warming) have significant effect on net sub-surface oxygen accumulation. However, changes in the relative production of particulate (POM) and dissolved organic material (DOM) generate relatively large changes in net sub-surface oxygen production. As POM/DOM production is a function of plankton community composition, this implies plankton biodiversity and food web structure may be important factors influencing O 2 production in a warmer ocean.This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'. © 2017 The Author(s).

Photosynthetic oxygen production in a warmer ocean: the Sargasso Sea as a case study

NASA Astrophysics Data System (ADS)

Richardson, Katherine; Bendtsen, Jørgen

2017-08-01

Photosynthetic O2 production can be an important source of oxygen in sub-surface ocean waters especially in permanently stratified oligotrophic regions of the ocean where O2 produced in deep chlorophyll maxima (DCM) is not likely to be outgassed. Today, permanently stratified regions extend across approximately 40% of the global ocean and their extent is expected to increase in a warmer ocean. Thus, predicting future ocean oxygen conditions requires a better understanding of the potential response of photosynthetic oxygen production to a warmer ocean. Based on our own and published observations of water column processes in oligotrophic regions, we develop a one-dimensional water column model describing photosynthetic oxygen production in the Sargasso Sea to quantify the importance of photosynthesis for the downward flux of O2 and examine how it may be influenced in a warmer ocean. Photosynthesis is driven in the model by vertical mixing of nutrients (including eddy-induced mixing) and diazotrophy and is found to substantially increase the downward O2 flux relative to physical-chemical processes alone. Warming (2°C) surface waters does not significantly change oxygen production at the DCM. Nor does a 15% increase in re-mineralization rate (assuming Q10 = 2; 2°C warming) have significant effect on net sub-surface oxygen accumulation. However, changes in the relative production of particulate (POM) and dissolved organic material (DOM) generate relatively large changes in net sub-surface oxygen production. As POM/DOM production is a function of plankton community composition, this implies plankton biodiversity and food web structure may be important factors influencing O2 production in a warmer ocean. This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'.

New Insights on Subsurface Imaging of Carbon Nanotubes in Polymer Composites via Scanning Electron Microscopy

NASA Technical Reports Server (NTRS)

Zhao, Minhua; Ming, Bin; Kim, Jae-Woo; Gibbons, Luke J.; Gu, Xiaohong; Nguyen, Tinh; Park, Cheol; Lillehei, Peter T.; Villarrubia, J. S.; Vladar, Andras E.;

Paleomagnetic correlation of basalt flows in selected coreholes near the Advanced Test Reactor Complex, the Idaho Nuclear Technology and Engineering Center, and along the southern boundary, Idaho National Laboratory, Idaho

USGS Publications Warehouse

Hodges, Mary K.V.; Champion, Duane E.

2016-10-03

The U.S. Geological Survey, in cooperation with the U.S. Department of Energy, used paleomagnetic data from 18 coreholes to construct three cross sections of subsurface basalt flows in the southern part of the Idaho National Laboratory (INL). These cross sections, containing descriptions of the subsurface horizontal and vertical distribution of basalt flows and sediment layers, will be used in geological studies, and to construct numerical models of groundwater flow and contaminant transport.Subsurface cross sections were used to correlate surface vents to their subsurface flows intersected by coreholes, to correlate subsurface flows between coreholes, and to identify possible subsurface vent locations of subsurface flows. Correlations were identified by average paleomagnetic inclinations of flows, and depth from land surface in coreholes, normalized to the North American Datum of 1927. Paleomagnetic data were combined, in some cases, with other data, such as radiometric ages of flows. Possible vent locations of buried basalt flows were identified by determining the location of the maximum thickness of flows penetrated by more than one corehole.Flows from the surface volcanic vents Quaking Aspen Butte, Vent 5206, Mid Butte, Lavatoo Butte, Crater Butte, Pond Butte, Vent 5350, Vent 5252, Tin Cup Butte, Vent 4959, Vent 5119, and AEC Butte are found in coreholes, and were correlated to the surface vents by matching their paleomagnetic inclinations, and in some cases, their stratigraphic positions.Some subsurface basalt flows that do not correlate to surface vents, do correlate over several coreholes, and may correlate to buried vents. Subsurface flows which correlate across several coreholes, but not to a surface vent include the D3 flow, the Big Lost flow, the CFA buried vent flow, the Early, Middle, and Late Basal Brunhes flows, the South Late Matuyama flow, the Matuyama flow, and the Jaramillo flow. The location of vents buried in the subsurface by younger basalt flows can be inferred if their flows are penetrated by several coreholes, by tracing the flows in the subsurface, and determining where the greatest thickness occurs.

Asymmetric Signature of Glacial Antarctic Intermediate Water in the Central South Pacific

NASA Astrophysics Data System (ADS)

Tapia, R.; Nuernberg, D.; Ho, S. L.; Lamy, F.; Ullermann, J.; Gersonde, R.; Tiedemann, R.

2017-12-01

Southern Ocean Intermediate Waters (SOIWs) play a key role in modulating the global climate on glacial-interglacial time scales as they connect the Southern Ocean and the tropics. Despite their importance, the past evolution of the SOIWs in the central South Pacific is largely unknown due to a dearth of sedimentary archives. Here we compare Mg/Ca-temperature, stable carbon and oxygen isotope records from surface-dwelling (G. bulloides) and deep-dwelling (G. inflata) planktic foraminifera at site PS75/059-2 (54°12.9' S, 125°25.53' W; recovery 13.98 m; 3.613 m water depth), located north of the modern Subantarctic Front. Our study focuses on the temperature and salinity variability controlled by SOIWs, which were subducted at the Subantarctic Front during the Last Glacial Maximum (LGM; 29-17ka BP) and the Penultimate Glacial Maximum (PGM; 180-150ka BP). During both glacial periods conditions at the subsurface ocean were colder and fresher relative to the Holocene (<10ka) suggesting an enhanced presence of SOIWs. In spite of the comparable subsurface cooling during both glacial, the subsurface ocean during the PGM was saltier and 0.35‰ more depleted in δ13C in comparison to the LGM. Interestingly, the mean δ13C value of the PGM is comparable to the Carbon Isotope Minimum Events, which might suggests a larger contribution of "old" low δ13C deep waters to the study site during the PGM. A Latitudinal comparison of subsurface proxies suggests glacial asymmetries in the advection of SOIWs into the central Pacific, plausibly related to glacial changes in the convection depth of SOIWs at the South Antarctic Front area rather than changes in production of the SOIWs.

A Passive Method for Detecting Vegetation Stress from Orbit: Chlorophyll Fluorescence Spectra from Fraunhofer Lines

NASA Technical Reports Server (NTRS)

Theisen, Arnold F.

2000-01-01

Solar-stimulated chlorophyll fluorescence measured with the Fraunhofer line depth method has correlated well with vegetation stress in previous studies. However, the instruments used in those studies were limited to a single solar absorption line (e.g. 656.3 nm), obviating the red/far-red ratio (R/FR) method. Optics and detector technology have reached the level whereby multiple, very narrow Fraunhofer lines are resolvable. Thirteen such lines span the visible spectrum in the red to far-red region where chlorophyll fluorescence occurs. Fluorescence intensities at the 13 Fraunhofer line wavelengths were used to model emission spectra. The source data were collected for summer and fall bean crops (Phaseolus vulgaris L.) subjected to various levels of nitrogen fertilization. The intensities were adjusted to account for Fraunhofer line depth and atmospheric transmittance. Multiple R/FR fluorescence ratios, calculated from the modeled fluorescence spectra, correlated strongly with leaf chlorophyll concentration and well with applied nitrogen. The ratio yielding the best correlation with chlorophyll utilized red fluorescence at the 694.5 nm Fraunhofer line and farred fluorescence at the 755.6 nm Fraunhofer line. Twenty R/FR ratios, each evaluated for the maximum differential between low and high (optimal) nitrogen treatments, ranked higher in some cases and lower in others, possibly related to the time of year the crops were grown and the stage of growth of the crops. Ratios with 728.9 nm and 738.9 nm in the denominator consistently ranked in the lowest and next lowest quartile, respectively. Ratios of the 656.3 nm Fraunhofer line and the 755.6 nm line consistently ranked highest for the summer crop. Ratios with 755.6 nm in the denominator ranked in the upper quartile for 10 out of 12 measurement dates. Differences in ratio ranking indicate that physiological conditions may be estimated using selected ratios of Fraunhofer lines within the context of R/FR analysis. A passive instrument designed to monitor R/FR chlorophyll fluorescence (i.e. vegetation stress) from orbit could be built today.

Visualization of Au Nanoparticles Buried in a Polymer Matrix by Scanning Thermal Noise Microscopy.

PubMed

Yao, Atsushi; Kobayashi, Kei; Nosaka, Shunta; Kimura, Kuniko; Yamada, Hirofumi

2017-02-17

Several researchers have recently demonstrated visualization of subsurface features with a nanometer-scale resolution using various imaging schemes based on atomic force microscopy. Since all these subsurface imaging techniques require excitation of the oscillation of the cantilever and/or sample surface, it has been difficult to identify a key imaging mechanism. Here we demonstrate visualization of Au nanoparticles buried 300 nm into a polymer matrix by measurement of the thermal noise spectrum of a microcantilever with a tip in contact to the polymer surface. We show that the subsurface Au nanoparticles are detected as the variation in the contact stiffness and damping reflecting the viscoelastic properties of the polymer surface. The variation in the contact stiffness well agrees with the effective stiffness of a simple one-dimensional model, which is consistent with the fact that the maximum depth range of the technique is far beyond the extent of the contact stress field.

Geostatistical analysis of ground-penetrating radar data: A means of describing spatial variation in the subsurface

NASA Astrophysics Data System (ADS)

Rea, Jane; Knight, Rosemary

1998-03-01

We have investigated the use of ground-penetrating radar (GFR) as a means of characterizing the heterogeneity of the subsurface. Radar data were collected at several sites in southwestern British Columbia underlain by glaciodeltaic sediments. A cliff face study was conducted in which geostatistical analysis of a digitized photograph of the face and the radar image of the face showed excellent agreement in the maximum correlation direction and the correlation length determined from these two data sets. Other two-dimensional (2-D) sections of radar data were divided into sedimentary architectural elements on the basis of the distinct radar appearance of these sedimentary units. Examples of four sedimentary units were used to obtain semivariograms from the radar data and resulted in maximum correlation lengths between 0.5 and 4.8 m. A 3-D radar survey, collected over a package of gravel and sand foresets, was analyzed to determine the paleoflow direction; a correlation length of 4 m was found in that direction.

Seasonal and nonseasonal variability of satellite-derived chlorophyll and colored dissolved organic matter concentration in the California Current

NASA Astrophysics Data System (ADS)

Kahru, Mati; Mitchell, B. Greg

2001-02-01

Time series of surface chlorophyll a concentration (Chl) and colored dissolved organic matter (CDOM) derived from the Ocean Color and Temperature Sensor and Sea-Viewing Wide Field-of-View Sensor were evaluated for the California Current area using regional algorithms. Satellite data composited for 8-day periods provide the ability to describe large-scale changes in surface parameters. These changes are difficult to detect based on in situ observations alone that suffer from undersampling the large temporal and spatial variability, especially in Chl. We detected no significant bias in satellite Chl estimates compared with ship-based measurements. The variability in CDOM concentration was significantly smaller than that in Chl, both spatially and temporally. While being subject to large interannual and short-term variations, offshore waters (100-1000 km from the shore) have an annual cycle of Chl and CDOM with a maximum in winter-spring (December-March) and a minimum in late summer. For inshore waters the maximum is more likely in spring (April-May). We detect significant increase in both Chl and CDOM off central and southern California during the La Niña year of 1999. The trend of increasing Chl and CDOM from October 1996 to June 2000 is statistically significant in many areas.

Research on subsurface deformed layer in ultra-precision cutting of single crystal copper by focused ion beam etching method

NASA Astrophysics Data System (ADS)

Chen, Y.; Huang, X. J.; Kong, J. X.

2018-03-01

In this paper, the focused ion beam was used to study the subsurface deformed layer of single crystal copper caused by the nanoscale single-point diamond fly cutting, and the possibility of using nanometer ultra-precision cutting to remove the larger deformation layer caused by traditional rough cutting process was explored. The maximum cutting thickness of single-point diamond cutting was about 146 nm, and the surface of the single-crystal copper after cutting was etched and observed by using the focused ion beam method. It was found that the morphology of the near-surface layer and the intermediate layer of the copper material were larger differences: the near-surface of the material was smaller and more compact, and the intermediate material layer of the material was more coarse sparse. The results showed that the traditional precision cutting would residual significant subsurface deformed layer and the thickness was on micron level. Even more, the subsurface deformed layer was obviously removed from about 12μm to 5μm after single-point diamond fly cutting in this paper. This paper proved that the large-scale subsurface deformed layer caused by traditional cutting process could be removed by nanometer ultra-precision cutting. It was of great significance to further establish the method that control of the deformation of weak rigid components by reducing the depth of the subsurface deformed layers.

Photosynthesis in chlorolichens: the influence of the habitat light regime.

PubMed

Piccotto, Massimo; Tretiach, Mauro

2010-11-01

The hypothesis that CO(2) gas exchange and chlorophyll a fluorescence (ChlaF) of lichens vary according to the light regimes of their original habitat, as observed in vascular plants, was tested by analysing the photosynthetic performance of 12 populations of seven dorsoventral, foliose lichens collected from open, south-exposed rocks to densely shaded forests. Light response curves were induced at optimum thallus water content and ChlaF emission curves at the species-specific photon flux at which the quantum yield of CO(2) assimilation is the highest and is saturating the photosynthetic process. Photosynthetic pigments were quantified in crude extracts. The results confirm that the maximum rate of gross photosynthesis is correlated with the chlorophyll content of lichens, which is influenced by light as well as by nitrogen availability. Like leaves, shade tolerant lichens emit more ChlaF than sun-loving ones, whereas the photosynthetic quantum conversion is higher in the latter.

Visual Analysis for Detection and Quantification of Pseudomonas cichorii Disease Severity in Tomato Plants.

PubMed

Rajendran, Dhinesh Kumar; Park, Eunsoo; Nagendran, Rajalingam; Hung, Nguyen Bao; Cho, Byoung-Kwan; Kim, Kyung-Hwan; Lee, Yong Hoon

2016-08-01

Pathogen infection in plants induces complex responses ranging from gene expression to metabolic processes in infected plants. In spite of many studies on biotic stress-related changes in host plants, little is known about the metabolic and phenotypic responses of the host plants to Pseudomonas cichorii infection based on image-based analysis. To investigate alterations in tomato plants according to disease severity, we inoculated plants with different cell densities of P. cichorii using dipping and syringe infiltration methods. High-dose inocula (≥ 10(6) cfu/ml) induced evident necrotic lesions within one day that corresponded to bacterial growth in the infected tissues. Among the chlorophyll fluorescence parameters analyzed, changes in quantum yield of PSII (ΦPSII) and non-photochemical quenching (NPQ) preceded the appearance of visible symptoms, but maximum quantum efficiency of PSII (Fv/Fm) was altered well after symptom development. Visible/near infrared and chlorophyll fluorescence hyperspectral images detected changes before symptom appearance at low-density inoculation. The results of this study indicate that the P. cichorii infection severity can be detected by chlorophyll fluorescence assay and hyperspectral images prior to the onset of visible symptoms, indicating the feasibility of early detection of diseases. However, to detect disease development by hyperspectral imaging, more detailed protocols and analyses are necessary. Taken together, change in chlorophyll fluorescence is a good parameter for early detection of P. cichorii infection in tomato plants. In addition, image-based visualization of infection severity before visual damage appearance will contribute to effective management of plant diseases.

Spatial variation of biogenic sulfur in the south Yellow Sea and the East China Sea during summer and its contribution to atmospheric sulfate aerosol.

PubMed

Zhang, Sheng-Hui; Yang, Gui-Peng; Zhang, Hong-Hai; Yang, Jian

2014-08-01

Spatial distributions of biogenic sulfur compounds including dimethylsulfide (DMS), dissolved and particulate dimethylsulfoniopropionate (DMSPd and DMSPp) were investigated in the South Yellow Sea (SYS) and the East China Sea (ECS) in July 2011. The concentrations of DMS and DMSPp were significantly correlated with the levels of chlorophyll a in the surface water. Simultaneously, relatively high ratio values of DMSP/chlorophyll a and DMS/chlorophyll a occurred in the areas where the phytoplankton community was dominated by dinoflagellates. The DMSPp and chlorophyll a size-fractionation showed that larger nanoplankton (5-20 μm) was the most important producer of DMSPp in the study area. The vertical profiles of DMS and DMSP were characterized by a maximum at the upper layer and the bottom concentrations were also relatively higher compared with the overlying layer of the bottom. In addition, a positive linear correlation was observed between dissolved dimethylsulfoxide (DMSOd) and DMS concentrations in the surface waters. The sea-to-air fluxes of DMS in the study area were estimated to be from 0.03 to 102.35 μmol m(-2) d(-1) with a mean of 16.73 μmol m(-2) d(-1) and the contribution of biogenic non-sea-salt SO4(2-) (nss-SO4(2-)) to the measured total nss-SO4(2-) in the atmospheric aerosol over the study area varied from 1.42% to 30.98%, with an average of 8.2%. Copyright © 2014 Elsevier B.V. All rights reserved.

The C21-formyl group in chlorophyll f originates from molecular oxygen.

PubMed

Garg, Harsh; Loughlin, Patrick C; Willows, Robert D; Chen, Min

2017-11-24

Chlorophylls (Chls) are the most important cofactors for capturing solar energy to drive photosynthetic reactions. Five spectral types of Chls have been identified to date, with Chl f having the most red-shifted absorption maximum because of a C2 1 -formyl group substitution of Chl f However, the biochemical provenance of this formyl group is unknown. Here, we used a stable isotope labeling technique ( 18 O and 2 H) to determine the origin of the C2 1 -formyl group of Chl f and to verify whether Chl f is synthesized from Chl a in the cyanobacterial species Halomicronema hongdechloris. In the presence of either H 2 18 O or 18 O 2 , the origin of oxygen atoms in the newly synthesized chlorophylls was investigated. The pigments were isolated with HPLC, followed by MS analysis. We found that the oxygen atom of the C2 1 -formyl group originates from molecular oxygen and not from H 2 O. Moreover, we examined the kinetics of the labeling of Chl a and Chl f from H. hongdechloris grown in 50% D 2 O-seawater medium under different light conditions. When cells were shifted from white light D 2 O-seawater medium to far-red light H 2 O-seawater medium, the observed deuteration in Chl f indicated that Chl(ide) a is the precursor of Chl f Taken together, our results advance our understanding of the biosynthesis pathway of the chlorophylls and the formation of the formyl group in Chl f . © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Effect of ionic liquids with different cations and anions on photosystem and cell structure of Scenedesmus obliquus.

PubMed

Xia, Yilu; Liu, Dingdong; Dong, Ying; Chen, Jiazheng; Liu, Huijun

2018-03-01

The rapid increase in the production and practical application of ionic liquids (ILs) could pose potential threats to aquatic systems. In this study, we investigated the effects of four ILs with different cations and anions, including 1-hexyl-3-methylimidazolium nitrate ([HMIM]NO 3 ), 1-hexyl-3-methylimidazolium chloride ([HMIM]Cl), N-hexyl-3-metylpyridinium chloride ([HMPy]Cl), and N-hexyl-3-metylpyridinium bromide ([HMPy]Br), on photosystem and cellular structure of Scenedesmus obliquus. The results indicated that ILs are phytotoxic to S. obliquus. The contents of chlorophyll a, chlorophyll b and total chlorophyll decreased with increasing ILs concentrations. The chlorophyll fluorescence parameters of photosynthetic system II (PSII), including minimal fluorescence yield (F 0 ), potential efficiency of PSII (F v /F o ), maximum quantum efficiency of PSII photochemistry (F v /F m ), yield of photochemical quantum [Y(II)], and non-photochemical quenching coefficient without measuring F 0 ' (NPQ), were all affected. This indicates that ILs could damage PSII, inhibit the primary reaction of photosynthesis, interdict the process of electron-transfer and lead to loss of heat-dissipating ability. ILs also increased cell membrane permeability of S. obliquus, influenced the cellular ultrastructure, changed the morphology of algae cells and destroyed the cell wall, cell membrane and organelles. The results indicated that imidazolium ILs had greater effect than pyridinium ILs, NO 3 - -IL and Br - -IL had greater effect than Cl - -IL. To minimize threats to the environment, the structure of ILs should be taken into consideration. Copyright © 2017 Elsevier Ltd. All rights reserved.

Interface extinction and subsurface peaking of the radiation pattern of a line source

NASA Technical Reports Server (NTRS)

Engheta, N.; Papas, C. H.; Elachi, C.

1981-01-01

The radiation pattern of a line source lying along the plane interface of two dielectric half-spaces is calculated. It is found that the pattern at the interface has a null (interface extinction); that the pattern in the upper half-space, whose index of refraction is taken to be less than that of the lower half-space, has a single lobe with a maximum normal to the interface; and that the pattern in the lower half-space (subsurface region) has two maxima (peaks) straddling symmetrically a minimum. Interpretation of these results in terms of ray optics, Oseen's extinction theorem, and the Cerenkov effect are given.

Identification of the 7-Hydroxymethyl Chlorophyll a Reductase of the Chlorophyll Cycle in Arabidopsis[W

PubMed Central

Meguro, Miki; Ito, Hisashi; Takabayashi, Atsushi; Tanaka, Ryouichi; Tanaka, Ayumi

2011-01-01

The interconversion of chlorophyll a and chlorophyll b, referred to as the chlorophyll cycle, plays a crucial role in the processes of greening, acclimation to light intensity, and senescence. The chlorophyll cycle consists of three reactions: the conversions of chlorophyll a to chlorophyll b by chlorophyllide a oxygenase, chlorophyll b to 7-hydroxymethyl chlorophyll a by chlorophyll b reductase, and 7-hydroxymethyl chlorophyll a to chlorophyll a by 7-hydroxymethyl chlorophyll a reductase. We identified 7-hydroxymethyl chlorophyll a reductase, which is the last remaining unidentified enzyme of the chlorophyll cycle, from Arabidopsis thaliana by genetic and biochemical methods. Recombinant 7-hydroxymethyl chlorophyll a reductase converted 7-hydroxymethyl chlorophyll a to chlorophyll a using ferredoxin. Both sequence and biochemical analyses showed that 7-hydroxymethyl chlorophyll a reductase contains flavin adenine dinucleotide and an iron-sulfur center. In addition, a phylogenetic analysis elucidated the evolution of 7-hydroxymethyl chlorophyll a reductase from divinyl chlorophyllide vinyl reductase. A mutant lacking 7-hydroxymethyl chlorophyll a reductase was found to accumulate 7-hydroxymethyl chlorophyll a and pheophorbide a. Furthermore, this accumulation of pheophorbide a in the mutant was rescued by the inactivation of the chlorophyll b reductase gene. The downregulation of pheophorbide a oxygenase activity is discussed in relation to 7-hydroxymethyl chlorophyll a accumulation. PMID:21934147

Effects of Dihydroartemisinin and Artemether on the Growth, Chlorophyll Fluorescence, and Extracellular Alkaline Phosphatase Activity of the Cyanobacterium Microcystis aeruginosa.

PubMed

Wang, Shoubing; Xu, Ziran

2016-01-01

Increased eutrophication in the recent years has resulted in considerable research focus on identification of methods for preventing cyanobacterial blooms that are rapid and efficient. The objectives of this study were to investigate the effects of dihydroartemisinin and artemether on the growth of Microcystis aeruginosa and to elucidate its mode of action. Variations in cell density, chlorophyll a, soluble protein, malondialdehyde, extracellular alkaline phosphatase activity (APA), and chlorophyll fluorescence parameters (Fv/Fm, ΦPSII, ETR, rapid light curves, fast chlorophyll fluorescence curves on fluorescence intensity, and relative variable fluorescence) were evaluated by lab-cultured experiments. Our results demonstrated that both dihydroartemisinin and artemether inhibited the growth of M.aeruginosa by impairing the photosynthetic center in photosystem II and reducing extracellular APA, with a higher sensitivity exhibited toward artemether. The inhibitory effects of dihydroartemisinin on M.aeruginosa increased with concentration, and the maximum growth inhibitory rate was 42.17% at 24 mg·L-1 after 120h exposure, whereas it was 55.72% at 6 mg·L-1 artemetherafter 120h exposure. Moreover, the chlorophyll fluorescence was significantly inhibited (p<0.05) after 120h exposure to 12 and 24 mg·L-1 dihydroartemisinin. Furthermore, after 120h exposure to 6 mg·L-1 artemether, Fv/Fm, ΦPSII, ETR and rETRmax showed a significant decrease (p<0.01) from initial values of 0.490, 0.516, 17.333, and 104.800, respectively, to 0. One-way analysis of variance showed that 6 mg·L-1 artemether and 24 mg·L-1 dihydroartemisinin had significant inhibitory effects on extracellular APA (p<0.01). The results of this study would be useful to further studies to validate the feasibility of dihydroartemisinin and artemether treatment to inhibit overall cyanobacterial growth in water bodies, before this can be put into practice.

High performance of chlorophyll-a prediction algorithms based on simulated OLCI Sentinel-3A bands in cyanobacteria-dominated inland waters

NASA Astrophysics Data System (ADS)

Watanabe, Fernanda Sayuri Yoshino; Alcântara, Enner; Stech, José Luiz

2018-07-01

In this research, we have investigated whether the chlorophyll-a (chl a) retrieval algorithms based on OLCI Sentinel-3A bands are suitable for cyanobacteria-dominated waters. Phytoplankton assemblages model optical properties of the water, influencing the performance of bio-optical algorithms. Understanding these processes is important to improve the prediction of photoactive pigments in order to use them as a proxy for trophic state and harmful algal bloom. So that, both empirical and semi-analytical approaches designed for different inland waters were tested. In addition, empirical models were tuned based on dataset collected in situ. The study was conducted in the Funil hydroelectric reservoir, where chl a ranged from 2.33 to 208.68 mg m-3 in May 2012 (austral fall) and 4.37 to 306.03 mg m-3 in October 2012 (austral spring). OLCI Sentinel-3A bands were tested in existing algorithms developed for other sensors and new band combinations were compared to analyze the errors produced. Normalized Difference Chlorophyll Index (NDCI) exhibited the best performance, with a Normalized Root Mean Square Error (NRMSE) of 9.30%. Result showed that wavelength at 665 nm is adequate to estimate chl a, although the maximum pigment absorption band is shifted due to phycocyanin fluorescence at approximately 650 nm.

Chlorophyll Fluorescence as a Possible Tool for Salinity Tolerance Screening in Barley (Hordeum vulgare L.).

PubMed Central

Belkhodja, R.; Morales, F.; Abadia, A.; Gomez-Aparisi, J.; Abadia, J.

1994-01-01

The application of chlorophyll fluorescence measurements to screening barley (Hordeum vulgare L.) genotypes for salinity tolerance has been investigated. Excised barley leaves were cut under water and incubated with the cut end immersed in water or in a 100-mM NaCl solution, either in the dark or in high light. Changes in rapid fluorescence kinetics occurred in excised barley leaves exposed to the saline solution only when the incubation was carried out in the presence of high light. Fluorescence changes consisted of decreases in the variable to maximum fluorescence ratio and in increases in the relative proportion of variable fluorescence leading to point I in the Kautsky fluorescence induction curve. These relative increases in fluorescence at point I appeared to arise from a delayed plastoquinone reoxidation in the dark, since they disappeared after short, far-red illumination, which is known to excite photosystem I preferentially. We show that a significant correlation existed between some fluorescence parameters, measured after a combined salt and high-light treatment, and other independent measurements of salinity tolerance. These results suggest that chlorophyll fluorescence, and especially the relative fluorescence at point I in the Kautsky fluorescence induction curve, could be used for the screening of barley genotypes for salinity tolerance. PMID:12232117

Elucidating the Relationship Between Phytoplankton and Primary Production in the Sargasso Sea Using New Observations of Nanoplankton and Picoplankton.

NASA Astrophysics Data System (ADS)

Matheson, J.; Johnson, R. J.; Bates, N. R.; Parsons, R. J.

2016-02-01

Attempts to model primary production in the subsurface of the Sargasso Sea frequently use HPLC marker pigments to infer phytoplankton community structure, which relies upon assumptions about the phytoplankton community typically determined with limited site-specific data. Recent estimates suggest that nano- and picoplankton account for 90% of the phytoplankton community at BATS and factors such as elevated growth rates and high abundances likely allow these two size classes to exert a strong influence on primary production. To help assess the contribution of nano- and picoplankton on primary production at the BATS site we determine abundances and biovolumes through direct measurements with epifluorescence microscopy in conjunction with flow cytometer picoplankton counts. Using this approach we are able to quantify prymnesiophytes, heterotrophic nano- and dinoflagellates, mixotrophic dinoflagellates, ciliates, diatoms, pico- and nano eukaryotes, and Prochlorococcus. Preliminary analysis of summertime distributions show prymnesiophytes are the dominant nanoplankton group (average upper 140 m concentration of 500 cells ml-1) although heterotrophic nano- and dinoflagellates makeup a greater fraction of nanoplankton biovolume. During the summer period, pico-eukaryotes and Prochlorococcus were found to be the dominant picoplankton groups, which both increased with depth down to the deep chlorophyll maximum where they appear to drive variability. Using these direct observations we investigate the seasonal relationship between phytoplankton community and primary production, specifically by contrasting the stratified summer phase with a well-mixed winter system. Finally, we use these community structure observations with HPLC data to develop algorithms for taxonomy models (i.e. CHEMTAX) to assess modes of variability in phytoplankton community and consequential influences on primary production for the past 25 years at the BATS site.

Upper Ocean Evolution Across the Beaufort Sea Marginal Ice Zone from Autonomous Gliders

NASA Astrophysics Data System (ADS)

Lee, Craig; Rainville, Luc; Perry, Mary Jane

2016-04-01

The observed reduction of Arctic summertime sea ice extent and expansion of the marginal ice zone (MIZ) have profound impacts on the balance of processes controlling sea ice evolution, including the introduction of several positive feedback mechanisms that may act to accelerate melting. Examples of such feedbacks include increased upper ocean warming though absorption of solar radiation, elevated internal wave energy and mixing that may entrain heat stored in subsurface watermasses (e.g., the relatively warm Pacific Summer (PSW) and Atlantic (AW) waters), and elevated surface wave energy that acts to deform and fracture sea ice. Spatial and temporal variability in ice properties and open water fraction impact these processes. To investigate how upper ocean structure varies with changing ice cover, and how the balance of processes shift as a function of ice fraction and distance from open water, four long-endurance autonomous Seagliders occupied sections that extended from open water, through the marginal ice zone, deep into the pack during summer 2014 in the Beaufort Sea. Sections reveal strong fronts where cold, ice-covered waters meet waters that have been exposed to solar warming, and O(10 km) scale eddies near the ice edge. In the pack, Pacific Summer Water and a deep chlorophyll maximum form distinct layers at roughly 60 m and 80 m, respectively, which become increasingly diffuse as they progress through the MIZ and into open water. The isopynal layer between 1023 and 1024 kgm-3, just above the PSW, consistently thickens near the ice edge, likely due to mixing or energetic vertical exchange associated with strong lateral gradients in this region. This presentation will discuss the upper ocean variability, its relationship to sea ice extent, and evolution over the summer to the start of freeze up.

Upper Ocean Evolution Across the Beaufort Sea Marginal Ice Zone from Autonomous Gliders

NASA Astrophysics Data System (ADS)

Lee, C.; Rainville, L.; Perry, M. J.

2016-02-01

The observed reduction of Arctic summertime sea ice extent and expansion of the marginal ice zone (MIZ) have profound impacts on the balance of processes controlling sea ice evolution, including the introduction of several positive feedback mechanisms that may act to accelerate melting. Examples of such feedbacks include increased upper ocean warming though absorption of solar radiation, elevated internal wave energy and mixing that may entrain heat stored in subsurface watermasses (e.g., the relatively warm Pacific Summer (PSW) and Atlantic (AW) waters), and elevated surface wave energy that acts to deform and fracture sea ice. Spatial and temporal variability in ice properties and open water fraction impact these processes. To investigate how upper ocean structure varies with changing ice cover, and how the balance of processes shift as a function of ice fraction and distance from open water, four long-endurance autonomous Seagliders occupied sections that extended from open water, through the marginal ice zone, deep into the pack during summer 2014 in the Beaufort Sea. Sections reveal strong fronts where cold, ice-covered waters meet waters that have been exposed to solar warming, and O(10 km) scale eddies near the ice edge. In the pack, Pacific Summer Water and a deep chlorophyll maximum form distinct layers at roughly 60 m and 80 m, respectively, which become increasingly diffuse as they progress through the MIZ and into open water. The isopynal layer between 1023 and 1024 kg m-3, just above the PSW, consistently thickens near the ice edge, likely due to mixing or energetic vertical exchange associated with strong lateral gradients in this region. This presentation will discuss the upper ocean variability, its relationship to sea ice extent, and evolution over the summer to the start of freeze up.

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities

DOE PAGES

Dupont, Chris L.; McCrow, John P.; Valas, Ruben; ...

2014-10-21

Here, transitions in community genomic features and biogeochemical processes were examined in surface and subsurface chlorophyll maximum (SCM) microbial communities across a trophic gradient from mesotrophic waters near San Diego, California to the oligotrophic Pacific. Transect end points contrasted in thermocline depth, rates of nitrogen and CO 2 uptake, new production and SCM light intensity. Relative to surface waters, bacterial SCM communities displayed greater genetic diversity and enrichment in putative sulfur oxidizers, multiple actinomycetes, low-light-adapted Prochlorococcus and cell-associated viruses. Metagenomic coverage was not correlated with transcriptional activity for several key taxa within Bacteria. Low-light-adapted Prochlorococcus, Synechococcus, and low abundance gamma-proteobacteriamore » enriched in the>3.0-μm size fraction contributed disproportionally to global transcription. The abundance of these groups also correlated with community functions, such as primary production or nitrate uptake. In contrast, many of the most abundant bacterioplankton, including SAR11, SAR86, SAR112 and high-light-adapted Prochlorococcus, exhibited low levels of transcriptional activity and were uncorrelated with rate processes. Eukaryotes such as Haptophytes and non-photosynthetic Aveolates were prevalent in surface samples while Mamielles and Pelagophytes dominated the SCM. Metatranscriptomes generated with ribosomal RNA-depleted mRNA (total mRNA) coupled to in vitro polyadenylation compared with polyA-enriched mRNA revealed a trade-off in detection eukaryotic organelle and eukaryotic nuclear origin transcripts, respectively. Gene expression profiles of SCM eukaryote populations, highly similar in sequence identity to the model pelagophyte Pelagomonas sp. CCMP1756, suggest that pelagophytes are responsible for a majority of nitrate assimilation within the SCM.« less

Resource-limited heterotrophic prokaryote production and its potential environmental impact associated with Mn nodule exploitation in the northeast equatorial pacific.

PubMed

Hyun, Jung-Ho

2006-08-01

Shipboard enrichment incubation experiments were performed to elucidate the limiting resources for heterotrophic prokaryotic production and to discuss the potential impact of bottom water and sediment discharges in relation to manganese (Mn) nodule exploitation on the heterotrophic prokaryotes in the oligotrophic northeast equatorial Pacific. Compared to an unamended control, the production of heterotrophic prokaryotes increased 25-fold in water samples supplemented with amino acids (i.e., organic carbon plus nitrogen), whereas the production increased five and two times, respectively, in samples supplemented with either glucose or ammonium alone. These results indicate that heterotrophic prokaryote production in the northeast equatorial Pacific was co-limited by the availability of dissolved organic carbon and inorganic nitrogen. In samples from the nutrient-depleted surface mixed layer (10-m depth), the addition of a slurry of bottom water and sediment doubled heterotrophic prokaryote production compared to an unamended control, whereas sonicating the slurry prior to addition quadrupled the production rate. However, little difference was observed between an unamended control and slurry-amended samples in the subsurface chlorophyll a (Chl a) maximum (SCM) layer. Thus, the impact of slurry discharge is more significant at the nutrient-depleted surface mixed layer than at the high-nutrient SCM layer. The greatly enhanced prokaryote production resulting from the addition of sonicated slurry further suggests that dissociated organic carbon may directly stimulate heterotrophic prokaryote production in the surface mixed layer. Overall, the results suggest that the surface discharge of bottom water and sediments during manganese nodule exploitation could have a significant environmental impact on the production of heterotrophic prokaryotes that are currently resource limited.

Layered Organization in the Coastal Ocean: Acoustical Data Acquisition Analyses and Synthesis

DTIC Science & Technology

2009-11-04

associated with such trophic exchange processes as are enabled by the presence of the seasonal chlorophyll maximum and horizontal patchiness. The presence...dependence of acoustic volume scattering strength in a coastal environment during different seasons allows designers to do a better job and operations...completed well before sunrise, even as early as 0300 PDT (local time). Sunrise was typically at ca. 0630 PDT during the LOCO field seasons . Our joint

TESTING LINKAGES BETWEEN GROUNDWATER, WATERSHED, AND IN-STREAM MODELS IN THE CONTENTNEA CREEK BASIN, NORTH CAROLINA, USA

EPA Science Inventory

Computer modeling provides support for the development of TMDLs (total maximum daily loads) of impaired water bodies. Evaluations of TMDLs for nutrients, especially for nitrogen, benefits from a multi-media assessment (i.e., atmosphere, landscape, subsurface, surface water). In t...

Black Sea spectral bio-optical models based on satellite data and their applications for assessment of spatial and temporal variability in waters transparency, chlorophyll a content and primary production

NASA Astrophysics Data System (ADS)

Churilova, T.; Suslin, V.

2012-04-01

Satellite observations of ocean color provide a unique opportunity in oceanography to assess productivity of the sea on different spatial and temporal scales. However it has been shown that the standard SeaWiFS algorithm generally overestimates summer chlorophyll concentration and underestimates pigment content during spring phytoplankton bloom in comparison with in situ measurements. It is required to develop regional algorithms which are based on biooptical characteristics typical for the Sea and consequently could be used for correct transformation of spectral features of water-leaving radiance to chlorophyll a concentrations (Chl), light absorption features of suspended and dissolved organic matter (CDM), downwelling light attenuation coefficient/euphotic zone depth (PAR1%) and rate of primary synthesis of organic substances (PP). The numerous measurements of light absorption spectra of phytoplankton, non-algal particles and coloured dissolved organic matter carried out since 1996 in different seasons and regions of the Black Sea allowed to make a parameterization of the light absorption by all optically active components. Taking into account regional peculiarities of the biooptical parameters, their difference between seasons, shallow and deep-waters, their depth-dependent variability within photosynthetic zone regional spectral models for estimation of chlorophyll a concentration (Chl Model), colored dissolved and suspended organic matter absorption (CDM Model), downwelling irradiance (PAR Model) and primary production (PP Model) have been developed based on satellite data. Test of validation of models showed appropriate accuracy of the models. The developed models have been applied for estimation of spatial/temporal variability of chlorophyll a, dissolved organic matter concentrations, waters transparency, euphotic zone depth and primary production based on SeaWiFS data. Two weeks averaged maps of spatial distribution of these parameters have been composed for period from 1998 to 2009 (most of them presented on site http://blackseacolor.com/browser3.html). Comparative analysis of long-term series (since 1998) of these parameters with subsurface water temperature (SST) and solar radiance of the sea surface (PAR-0m) revealed the key factors determining the seasonal and inter-annual variations of Chl, PAR1%, CDM, PP. The seasonal dynamics of these parameters were more pronounced compared with inter-annual variability. The later was related to climate effect. In deep-waters region relatively lower SST during cold winters were forcing more intensive winter-spring phytoplankton bloom. In north-western shelf inter-annual variability in river (Danube) run off, which was related to climate change as well, determined year-to-year changing in Chl, CDM, PAR1%, and PP.

In vitro rapid intraoral adjustment of porcelain prostheses using a high-speed dental handpiece.

PubMed

Song, Xiao-Fei; Yin, Ling; Han, Yi-Gang; Wang, Hui

2008-03-01

In vitro rapid intraoral adjustment of porcelain prostheses was conducted using a high-speed dental handpiece and diamond bur. The adjustment process was characterized by measurement of removal forces and energy, with scanning electron microscopic (SEM) observation of porcelain debris, surfaces and subsurface damage produced as a function of operational feed rate. Finite element analysis (FEA) was applied to evaluate subsurface stress distributions and degrees of subsurface damage. The results show that an increase in feed rate resulted in increases in both tangential and normal forces (analysis of variance (ANOVA), P<0.01). When the feed rate approached the highest rate of 60mm min(-1) at a fixed depth of cut of 100microm, the tangential force was nearly seven times that at the lowest feed rate of 15mm min(-1). Consequently, the specific removal energy increased significantly (ANOVA, P<0.01), and the maximum depth of subsurface damage obtained was approximately 110 and 120microm at the highest feed rate of 60mm min(-1) using SEM and FEA, respectively. The topographies of both the adjusted porcelain surfaces and the debris demonstrate microscopically that porcelain was removed via brittle fracture and plastic deformation. Clinicians must be cautious when pursuing rapid dental adjustments, because high operational energy, larger forces and severe surface and subsurface damage can be induced.

Ammonia and nitrite oxidation in the Eastern Tropical North Pacific

NASA Astrophysics Data System (ADS)

Peng, Xuefeng; Fuchsman, Clara A.; Jayakumar, Amal; Oleynik, Sergey; Martens-Habbena, Willm; Devol, Allan H.; Ward, Bess B.

2015-12-01

Nitrification plays a key role in the marine nitrogen (N) cycle, including in oceanic oxygen minimum zones (OMZs), which are hot spots for denitrification and anaerobic ammonia oxidation (anammox). Recent evidence suggests that nitrification links the source (remineralized organic matter) and sink (denitrification and anammox) of fixed N directly in the steep oxycline in the OMZs. We performed shipboard incubations with 15N tracers to characterize the depth distribution of nitrification in the Eastern Tropical North Pacific (ETNP). Additional experiments were conducted to investigate photoinhibition. Allylthiourea (ATU) was used to distinguish the contribution of archaeal and bacterial ammonia oxidation. The abundance of archaeal and β-proteobacterial ammonia monooxygenase gene subunit A (amoA) was determined by quantitative polymerase chain reaction. The rates of ammonia and nitrite oxidation showed distinct subsurface maxima, with the latter slightly deeper than the former. The ammonia oxidation maximum coincided with the primary nitrite concentration maximum, archaeal amoA gene maximum, and the subsurface nitrous oxide maximum. Negligible rates of ammonia oxidation were found at anoxic depths, where high rates of nitrite oxidation were measured. Archaeal amoA gene abundance was generally 1 to 2 orders of magnitude higher than bacterial amoA gene abundance, and inhibition of ammonia-oxidizing bacteria with 10 μM ATU did not affect ammonia oxidation rates, indicating the dominance of archaea in ammonia oxidation. These results depict highly dynamic activities of ammonia and nitrite oxidation in the oxycline of the ETNP OMZ.

Seasonality, phytoplankton succession and the biogeochemical impacts of an autumn storm in the northeast Atlantic Ocean

NASA Astrophysics Data System (ADS)

Painter, Stuart C.; Finlay, Madelaine; Hemsley, Victoria S.; Martin, Adrian P.

2016-03-01

Phytoplankton chemotaxonomic distributions are examined in conjunction with taxon specific particulate biomass concentrations and phytoplankton abundances to investigate the biogeochemical consequences of the passage of an autumn storm in the northeast Atlantic Ocean. Chemotaxonomy indicated that the phytoplankton community was dominated by nanoplankton (2-20 μm), which on average represented 75 ± 8% of the community. Microplankton (20-200 μm) and picoplankton (<2 μm) represented 21 ± 7% and 4 ± 3% respectively with the microplankton group composed of almost equal proportions of diatoms (53 ± 17%) and dinoflagellates (47 ± 17%). Total chlorophyll-a (TCHLa = CHLa + Divinyl CHLa) concentrations ranged from 22 to 677 ng L-1, with DvCHLa making minor contributions of between <1% and 13% to TCHLa. Higher DvCHLa contributions were seen during the storm, which deepened the surface mixed layer, increased mixed layer nutrient concentrations and vertically mixed the phytoplankton community leading to a post-storm increase in surface chlorophyll concentrations. Picoplankton were rapid initial respondents to the changing conditions with pigment markers showing an abrupt 4-fold increase in proportion but this increase was not sustained post-storm. 19‧-HEX, a chemotaxonomic marker for prymnesiophytes, was the dominant accessory pigment pre- and post-storm with concentrations of 48-435 ng L-1, and represented 44% of total carotenoid concentrations. Accompanying scanning electron microscopy results support the pigment-based analysis but also provide detailed insight into the nano- and microplankton communities, which proved to be highly variable between pre-storm and post-storm sampling periods. Nanoplankton remained the dominant size class pre- and post-storm but the microplankton proportion peaked during the period of maximum nutrient and chlorophyll concentrations. Classic descriptions of autumn blooms resulting from storm driven eutrophication events promoting phytoplankton growth in surface waters should be tempered with greater understanding of the role of storm driven vertical reorganization of the water column and of resident phytoplankton communities. Crucially, in this case we observed no change in integrated chlorophyll, particulate organic carbon or biogenic silica concentrations despite also observing a ∼50% increase in surface chlorophyll concentrations which indicated that the surface enhancement in chlorophyll concentrations was most likely fed from below rather than resulting from in situ growth. Though not measured directly there was no evidence of enhanced export fluxes associated with this storm. These observations have implications for the growing practice of using chlorophyll fluorescence from remote platforms to determine ocean productivity late in the annual productivity period and in response to storm mixing.

Nitrous Oxide Emissions From Northern Forested and Harvested Ecosystems

NASA Astrophysics Data System (ADS)

Kavanaugh, K. M.; Kellman, L. M.

2005-12-01

Very little is known about how deforestation alters the soil subsurface production and surface emissions of N2O from northern forest soils. Soil N2O surface fluxes and subsurface concentrations from two 3 year old harvested and intact forest pairs of contrasting soil texture were monitored during the 2004 and 2005 growing seasons in the Acadian forest of Atlantic Canada in order to: 1) quantify N2O emissions associated with each land-use type, 2) examine spatial and temporal variations in subsurface concentrations and surface fluxes at each site, and 3) determine the suitability of a photoacoustic gas monitor (PGM) for in- situ field measurements vs. field sample collection and laboratory analysis on a gas chromatograph. Each site was instrumented with 11 permanent collars for surface flux measurements designed to capture the microsite variability at the sites. Subsurface soil gas samplers, designed to identify the important zones of N2O production in the vertical profile were installed at depths of 0, 10, 20 and 35 cm below the organic-mineral soil interface. Surface fluxes were measured with non-steady-state vented surface flux chambers with measurements of all surface flux and subsurface data made on a bi-weekly basis. Results suggest that spatial and temporal variability in surface emissions are very high and routinely close to zero. Subsurface profile concentration data shows vertical concentration profiles at intact forest sites with concentrations close to atmospheric, while harvested sites show a pattern of increasing N2O concentration with depth, reaching a maximum of approximately 27000ppb at 35cm.

Integration of airborne optical and thermal imagery for archaeological subsurface structures detection: the Arpi case study (Italy)

NASA Astrophysics Data System (ADS)

Bassani, C.; Cavalli, R. M.; Fasulli, L.; Palombo, A.; Pascucci, S.; Santini, F.; Pignatti, S.

2009-04-01

The application of Remote Sensing data for detecting subsurface structures is becoming a remarkable tool for the archaeological observations to be combined with the near surface geophysics [1, 2]. As matter of fact, different satellite and airborne sensors have been used for archaeological applications, such as the identification of spectral anomalies (i.e. marks) related to the buried remnants within archaeological sites, and the management and protection of archaeological sites [3, 5]. The dominant factors that affect the spectral detectability of marks related to manmade archaeological structures are: (1) the spectral contrast between the target and background materials, (2) the proportion of the target on the surface (relative to the background), (3) the imaging system characteristics being used (i.e. bands, instrument noise and pixel size), and (4) the conditions under which the surface is being imaged (i.e. illumination and atmospheric conditions) [4]. In this context, just few airborne hyperspectral sensors were applied for cultural heritage studies, among them the AVIRIS (Airborne Visible/Infrared Imaging Spectrometer), the CASI (Compact Airborne Spectrographic Imager), the HyMAP (Hyperspectral MAPping) and the MIVIS (Multispectral Infrared and Visible Imaging Spectrometer). Therefore, the application of high spatial/spectral resolution imagery arise the question on which is the trade off between high spectral and spatial resolution imagery for archaeological applications and which spectral region is optimal for the detection of subsurface structures. This paper points out the most suitable spectral information useful to evaluate the image capability in terms of spectral anomaly detection of subsurface archaeological structures in different land cover contexts. In this study, we assess the capability of MIVIS and CASI reflectances and of ATM and MIVIS emissivities (Table 1) for subsurface archaeological prospection in different sites of the Arpi archaeological area (southern Italy). We identify, for the selected sites, three main land cover overlying the buried structures: (a) photosynthetic (i.e. green low vegetation), (b) non-photosynthetic vegetation (i.e. yellow, dry low vegetation), and (c) dry bare soil. Afterwards, we analyse the spectral regions showing an inherent potential for the archaeological detection as a function of the land cover characteristics. The classified land cover units have been used in a spectral mixture analysis to assess the land cover fractional abundance surfacing the buried structures (i.e. mark-background system). The classification and unmixing results for the CASI, MIVIS and ATM remote sensing data processing showed a good accordance both in the land cover units and in the subsurface structures identification. The integrated analysis of the unmixing results for the three sensors allowed us to establish that for the land cover characterized by green and dry vegetation (occurrence higher than 75%), the visible and near infrared (VNIR) spectral regions better enhance the buried man-made structures. In particular, if the structures are covered by more than 75% of vegetation the two most promising wavelengths for their detection are the chlorophyll peak at 0.56 m (Visible region) and the red edge region (0.67 to 0.72 m; NIR region). This result confirms that the variation induced by the subsurface structures (e.g., stone walls, tile concentrations, pavements near the surface, road networks) to the natural vegetation growth and/or colour (i.e., for different stress factors) is primarily detectable by the chlorophyll peak and the red edge region applied for the vegetation stress detection. Whereas, if dry soils cover the structures (occurrence higher than 75%), both the VNIR and thermal infrared (TIR) regions are suitable to detect the subsurface structures. This work demonstrates that airborne reflectances and emissivities data, even though at different spatial/spectral resolutions and acquisition time represent an effective and rapid tool to detect subsurface structures within different land cover contexts. As concluding results, this study reveals that the airborne multi/hyperspectral image processing can be an effective and cost-efficient tool to perform a preliminary analysis of those areas where large cultural heritage assets prioritising and localizing the sites where to apply near surface geophysics surveys. Spectral Region Spectral Resolution ( m )Spectral Range ( m) Spatial Resolution (m)IFOV (deg) ATM VIS-NIR SWIR-TIR (tot 12 ch) variable from 24 to 3100 0.42 - 1150 2 0.143 CASI VNIR (48 ch.) 0.01 0.40-0.94 2 0.115 MIVIS VNIR (28ch.) 0.02 (VIS) 0.05 (NIR) 0.43-0.83 (VIS) 1.15-1.55 (NIR) 6 - 7 0.115 SWIR (64ch.) 0.09 1.983-2.478 TIR (10ch.) 0.34-0.54 8.180-12.700 Table 1. Characteristics of airborne sensors used for the Arpi test area. 1 References 2 [1] Beck, A., Philip, G., Abdulkarim, M. and Donoghue, D., 2007. Evaluation of Corona and Ikonos high resolution satellite imagery for archaeological prospection in western Syria. Antiquity, 81: 161-175. 3 [2] Altaweel, M., 2005. The Use of ASTER Satellite Imagery in Archaeological Contexts. Archaeological Prospection, 12: 151- 166. 4 [3] Cavalli, R.M.; Colosi, F.; Palombo, A.; Pignatti, S.; Poscolieri, M. Remote hyperspectral imagery as a support to archaeological prospection. J. of Cultural Heritage 2007, 8, 272-283. 5 [4] Kucukkaya, A.G. Photogrammetry and remote sensing in archaeology. J. Quant. Spectrosc. Radiat. Transfer 2004, 97(1-3), 83-97. [5] Rowlands, A.; Sarris, A. Detection of exposed and subsurface archaeological remains using multi-sensor remote sensing. J. of Archaeological Science 2007, 34, 795-803.

Properties of the Water Column and Bottom Derived from AVIRIS Data

NASA Technical Reports Server (NTRS)

Lee, Zhong-Ping; Carder, Kendall L.; Chen, F. Robert; Peacock, Thomas G.

2001-01-01

Using AVIRIS data as an example, we show in this study that the optical properties of the water column and bottom of a large, shallow area can be adequately retrieved using a model-driven optimization technique. The simultaneously derived properties include bottom depth, bottom albedo, and water absorption and backscattering coefficients, which in turn could be used to derive concentrations of chlorophyll, dissolved organic matter, and suspended sediments. The derived bottom depths were compared with a bathymetry chart and a boat survey and were found to agree very well. Also, the derived bottom-albedo image shows clear spatial patterns, with end members consistent with sand and seagrass. The image of absorption and backscattering coefficients indicates that the water is quite horizontally mixed. These results suggest that the model and approach used work very well for the retrieval of sub-surface properties of shallow-water environments even for rather turbid environments like Tampa Bay, Florida.

Development of Great Lakes algorithms for the Nimbus-G coastal zone color scanner

NASA Technical Reports Server (NTRS)

Tanis, F. J.; Lyzenga, D. R.

1981-01-01

A series of experiments in the Great Lakes designed to evaluate the application of the Nimbus G satellite Coastal Zone Color Scanner (CZCS) were conducted. Absorption and scattering measurement data were reduced to obtain a preliminary optical model for the Great Lakes. Available optical models were used in turn to calculate subsurface reflectances for expected concentrations of chlorophyll-a pigment and suspended minerals. Multiple nonlinear regression techniques were used to derive CZCS water quality prediction equations from Great Lakes simulation data. An existing atmospheric model was combined with a water model to provide the necessary simulation data for evaluation of the preliminary CZCS algorithms. A CZCS scanner model was developed which accounts for image distorting scanner and satellite motions. This model was used in turn to generate mapping polynomials that define the transformation from the original image to one configured in a polyconic projection. Four computer programs (FORTRAN IV) for image transformation are presented.

Responses of Pseudokirchneriella subcapitata and algal assembly to photocatalytic titanium dioxide nanoparticles

NASA Astrophysics Data System (ADS)

Metzler, David M.

Development and use of nanomaterials has increased significantly over the past decade. This trend is expected to continue for the foreseeable future, which have led some to call this new industrial revolution. One aspect of these materials that make them special is their unique properties that are different from the bulk material. These unique properties have not been investigated to determine to what extent they will impact the environment. This work was undertaken to understand how nanoparticles could impact algae. For the determination of nanoparticle toxicity, dose-response experiments were run for similar sized Al2O3, TiO2, and SiO2. Additional, a wide range of nanoparticle sizes (d1) were tested at 100 and 1000 mg/L for Al2O3, TiO 2, and SiO2. Results of different nanoparticles and similar d1 dose-response data show increased toxicity with increased surface charge of the nanoparticle. Various d1 of Al2O 3 effect the population and chlorophyll a but not lipid peroxidation. Various d1 of SiO2 and TiO2 effect the population, chlorophyll a, and lipid peroxidation. Of all TiO2 d1 tested 42 nm had the greatest effect on population, chlorophyll a, and lipid peroxidation. The effect of light intensity, algal age, and body burden was examined. The body burden was adjusted by varying the initial algal cell population while keeping the nanoparticle concentration constant. Decreased body burden decreased the effect on population. The chlorophyll a and lipid peroxidation varied with the initial decreased with decreased body burden. This trend was reversed at low body burden, the chlorophyll a and lipid peroxidation increased 3 -- 4 times greater than control values. The algal cell age was controlled by the hydraulic retention time of the pre-exposure continuously stirred tank reactors. As the age of the algae increased the effect of population increased. At algae age great then 10 days the effect on population reminded constant. Titanium dioxide effect on chlorophyll a varied with algal age and TiO 2 concentration. Finally, the effect of light intensity was examined for both visible and UV wavelengths. The greatest effect was for 1000 mg/L of TiO2 under varying light. Peak maximums occurred for chlorophyll a and lipid peroxidation. Peak minimums occurred for population. Varying UV light intensity resulted in decreased population for 100 and 1000 mg/L of TiO2. Additionally, chlorophyll a reached a maximum at 17 and 5 x the control values under 66% UV light for 100 and 1000 mg/L of TiO 2, respectively. The effect of copper and phenol to P. subcapitata was examined in the presence of TiO2. Copper in the presence of TiO 2 increased both chlorophyll a and lipid peroxidation greater than in the presence of TiO2 alone. Optimum conditions were observed for both endpoints. When algae were exposed to Cu and TiO2 the compounds acted independently of each other, having an additive effect on population. The TiO2 acted as a protective barrier against phenol toxicity at low phenol concentrations. At high phenol concentrations the toxicity of both phenol and TiO2 increased. Both compounds acted to disrupt the cell wall stability as seen with microscopy imaging. This was presumed to be through destruction of the Ca-pectinate within the cell wall, as indicated by increased soluble Ca correlated with phenol concentrations. The effect of TiO2 on cell barriers and natural algal assemblage was investigated. SEM images reveal that algae exposed to TiO2 have DNA external to the cell. Under hypotonic stress the loss of electrolytes was less controlled when the total number of nanoparticles was 1010 in the sample, at d1 less than 46 nm. At d1 greater than 46 nm no effect on electrolyte regulation was noted. Natural algal assemblages exposed to TiO2 varied there fatty acid (FA) content. This could be due to selective growth resistant reactive oxygen species (ROS) organisms or the percentages of certain FAs were decreased because of sensitivity to ROS. (Abstract shortened by UMI.)

Vertical Distributions of Coccolithophores, PIC, POC, Biogenic Silica, and Chlorophyll a Throughout the Global Ocean.

PubMed

Balch, William M; Bowler, Bruce C; Drapeau, David T; Lubelczyk, Laura C; Lyczkowski, Emily

2018-01-01

Coccolithophores are a critical component of global biogeochemistry, export fluxes, and seawater optical properties. We derive globally significant relationships to estimate integrated coccolithophore and coccolith concentrations as well as integrated concentrations of particulate inorganic carbon (PIC) from their respective surface concentration. We also examine surface versus integral relationships for other biogeochemical variables contributed by all phytoplankton (e.g., chlorophyll a and particulate organic carbon) or diatoms (biogenic silica). Integrals are calculated using both 100 m integrals and euphotic zone integrals (depth of 1% surface photosynthetically available radiation). Surface concentrations are parameterized in either volumetric units (e.g., m -3 ) or values integrated over the top optical depth. Various relationships between surface concentrations and integrated values demonstrate that when surface concentrations are above a specific threshold, the vertical distribution of the property is biased to the surface layer, and when surface concentrations are below a specific threshold, the vertical distributions of the properties are biased to subsurface maxima. Results also show a highly predictable decrease in explained-variance as vertical distributions become more vertically heterogeneous. These relationships have fundamental utility for extrapolating surface ocean color remote sensing measurements to 100 m depth or to the base of the euphotic zone, well beyond the depths of detection for passive ocean color remote sensors. Greatest integrated concentrations of PIC, coccoliths, and coccolithophores are found when there is moderate stratification at the base of the euphotic zone.

Vertical Distributions of Coccolithophores, PIC, POC, Biogenic Silica, and Chlorophyll a Throughout the Global Ocean

PubMed Central

Bowler, Bruce C.; Drapeau, David T.; Lubelczyk, Laura C.; Lyczkowski, Emily

2018-01-01

Abstract Coccolithophores are a critical component of global biogeochemistry, export fluxes, and seawater optical properties. We derive globally significant relationships to estimate integrated coccolithophore and coccolith concentrations as well as integrated concentrations of particulate inorganic carbon (PIC) from their respective surface concentration. We also examine surface versus integral relationships for other biogeochemical variables contributed by all phytoplankton (e.g., chlorophyll a and particulate organic carbon) or diatoms (biogenic silica). Integrals are calculated using both 100 m integrals and euphotic zone integrals (depth of 1% surface photosynthetically available radiation). Surface concentrations are parameterized in either volumetric units (e.g., m−3) or values integrated over the top optical depth. Various relationships between surface concentrations and integrated values demonstrate that when surface concentrations are above a specific threshold, the vertical distribution of the property is biased to the surface layer, and when surface concentrations are below a specific threshold, the vertical distributions of the properties are biased to subsurface maxima. Results also show a highly predictable decrease in explained‐variance as vertical distributions become more vertically heterogeneous. These relationships have fundamental utility for extrapolating surface ocean color remote sensing measurements to 100 m depth or to the base of the euphotic zone, well beyond the depths of detection for passive ocean color remote sensors. Greatest integrated concentrations of PIC, coccoliths, and coccolithophores are found when there is moderate stratification at the base of the euphotic zone. PMID:29576683

Timescales of Growth Response of Microbial Mats to Environmental Change in an Ice-Covered Antarctic Lake

PubMed Central

Hawes, Ian; Sumner, Dawn Y.; Andersen, Dale T.; Jungblut, Anne D.; Mackey, Tyler J.

2013-01-01

Lake Vanda is a perennially ice-covered, closed-basin lake in the McMurdo Dry Valleys, Antarctica. Laminated photosynthetic microbial mats cover the floor of the lake from below the ice cover to >40 m depth. In recent decades, the water level of Lake Vanda has been rising, creating a “natural experiment” on development of mat communities on newly flooded substrates and the response of deeper mats to declining irradiance. Mats in recently flooded depths accumulate one lamina (~0.3 mm) per year and accrue ~0.18 µg chlorophyll-a cm−2 y−1. As they increase in thickness, vertical zonation becomes evident, with the upper 2-4 laminae forming an orange-brown zone, rich in myxoxanthophyll and dominated by intertwined Leptolyngbya trichomes. Below this, up to six phycobilin-rich green/pink-pigmented laminae form a subsurface zone, inhabited by Leptolyngbya, Oscillatoria and Phormidium morphotypes. Laminae continued to increase in thickness for several years after burial, and PAM fluorometry indicated photosynthetic potential in all pigmented laminae. At depths that have been submerged for >40 years, mats showed similar internal zonation and formed complex pinnacle structures that were only beginning to appear in shallower mats. Chlorophyll-a did not change over time and these mats appear to represent resource-limited “climax” communities. Acclimation of microbial mats to changing environmental conditions is a slow process, and our data show how legacy effects of past change persist into the modern community structure. PMID:24832656

Timescales of growth response of microbial mats to environmental change in an ice-covered antarctic lake.

PubMed

Hawes, Ian; Sumner, Dawn Y; Andersen, Dale T; Jungblut, Anne D; Mackey, Tyler J

2013-01-25

Lake Vanda is a perennially ice-covered, closed-basin lake in the McMurdo Dry Valleys, Antarctica. Laminated photosynthetic microbial mats cover the floor of the lake from below the ice cover to >40 m depth. In recent decades, the water level of Lake Vanda has been rising, creating a "natural experiment" on development of mat communities on newly flooded substrates and the response of deeper mats to declining irradiance. Mats in recently flooded depths accumulate one lamina (~0.3 mm) per year and accrue ~0.18 µg chlorophyll-a cm-2 y-1. As they increase in thickness, vertical zonation becomes evident, with the upper 2-4 laminae forming an orange-brown zone, rich in myxoxanthophyll and dominated by intertwined Leptolyngbya trichomes. Below this, up to six phycobilin-rich green/pink-pigmented laminae form a subsurface zone, inhabited by Leptolyngbya, Oscillatoria and Phormidium morphotypes. Laminae continued to increase in thickness for several years after burial, and PAM fluorometry indicated photosynthetic potential in all pigmented laminae. At depths that have been submerged for >40 years, mats showed similar internal zonation and formed complex pinnacle structures that were only beginning to appear in shallower mats. Chlorophyll-a did not change over time and these mats appear to represent resource-limited "climax" communities. Acclimation of microbial mats to changing environmental conditions is a slow process, and our data show how legacy effects of past change persist into the modern community structure.

Intraseasonal patterns in coastal plankton biomass off central Chile derived from satellite observations and a biochemical model

NASA Astrophysics Data System (ADS)

Gomez, Fabian A.; Spitz, Yvette H.; Batchelder, Harold P.; Correa-Ramirez, Marco A.

2017-10-01

Subseasonal (5-130 days) environmental variability can strongly affect plankton dynamics, but is often overlooked in marine ecology studies. We documented the main subseasonal patterns of plankton biomass in the coastal upwelling system off central Chile, the southern part of the Humboldt System. Subseasonal variability was extracted from temporal patterns in satellite data of wind stress, sea surface temperature, and chlorophyll from the period 2003-2011, and from a realistically forced eddy-resolving physical-biochemical model from 2003 to 2008. Although most of the wind variability occurs at submonthly frequencies (< 30 days), we found that the dominant subseasonal pattern of phytoplankton biomass is within the intraseasonal band (30-90 days). The strongest intraseasonal coupling between wind and plankton is in spring-summer, when increased solar radiation enhances the phytoplankton response to upwelling. Biochemical model outputs show intraseasonal shifts in plankton community structure, mainly associated with the large fluctuations in diatom biomass. Diatom biomass peaks near surface during strong upwelling, whereas small phytoplankton biomass peaks at subsurface depths during relaxation or downwelling periods. Strong intraseasonally forced changes in biomass and species composition could strongly impact trophodynamics connections in the ecosystem, including the recruitment of commercially important fish species such as common sardine and anchovy. The wind-driven variability of chlorophyll concentration was connected to mid- and high-latitude atmospheric anomalies, which resemble disturbances with frequencies similar to the tropical Madden-Julian Oscillation.

Primary production in the northern Red Sea

NASA Astrophysics Data System (ADS)

Qurban, Mohammed Ali; Balala, Arvin C.; Kumar, Sanjeev; Bhavya, P. S.; Wafar, Mohideen

2014-04-01

Rates of uptake of carbon and nitrogen (ammonium, nitrate and urea) by phytoplankton, along with concentrations of nutrients and chlorophyll a, in the Saudi Arabian waters of the northern Red Sea (23 °N-28 °N) were measured in autumn, 2012. Concentrations of nitrate, nitrite and phosphate within the euphotic zone were in trace amounts while those of silicon were in excess of 0.5 μmol L- 1. Concentrations of chlorophyll (Chl a) were very low within the euphotic zone (0.01-0.6 μg L- 1 at discrete depths and 1.53-21.5 mg m- 2 as column-integrated values). A deep chlorophyll maximum and a nitrite maximum were present between 60 and 80 m at almost all of the stations occupied. Rates of carbon uptake at discrete depths ranged from 0.02 to 3 μg C L- 1 h- 1. Chl-normalized carbon uptake rates related with ambient light in a Michaelis-Menten kinetic pattern. About 80% of the carbon uptake was attributable to the < 20 μm fraction. Ammonium and urea were the nitrogen compounds taken up in preference by phytoplankton and accounted for close to 90% of the total N uptake. Considered together, these results indicate that the waters of the northern Red Sea are oligotrophic and that the primary production is strongly N-controlled. Analyses of the data and interpretation of the results led to the following speculations: (1) the perceived north-south gradient in Chl a (and possibly in primary production) in the Red Sea is maintained by circulation of Chl- and nutrient-rich waters through a series of gyres, (2) there is a greater role for heterotrophy and microbial loop in the trophic dynamics, and (3) in situ nitrification in the euphotic zone is an important source of N for phytoplankton and consequently export of carbon to deep sea could be lesser than that indicated by f-ratios.

Estimation of proximate composition, micronutrients and phytochemical compounds in traditional vegetables from Andaman and Nicobar Islands.

PubMed

Singh, Shrawan; Singh, D R; Salim, K M; Srivastava, Amit; Singh, L B; Srivastava, R C

2011-11-01

In present study, 10 preferred traditional vegetables from Andaman and Nicobar Islands, India, were analysed for nutritional profiles. Moisture content in their edible parts ranged from 83.43 to 94.78%. Maximum ash content was recorded in Portulaca oleracea, crude protein in Colocasia esculenta, crude fibre in Eryngium foetidum and fat in E. foetidum. Phosphorus was maximum in Ipomea aquatica, potassium in C. esculenta, zinc, calcium and manganese in Centella asiatica, copper in Sauropus androgynous, sodium and iron in P. oleracea, magnesium in Amaranthus viridi and cobalt in C. esculenta. Maximum polyphenol was recorded in Hibiscus sabdariffa, carotenoids in A. viridi, ascorbic acid in Saursops androgynus, anthocyanin in C. esculenta and chlorophyll in S. androgynus. Antioxidant activity was maximum in P. oleracea. Positive correlation was observed between polyphenol and tannin content and also between antioxidant activity and photochemicals. The developed nutritional profiles is being used in health and nutrition related schemes in Islands.

Impacts of microtopographic snow-redistribution and lateral subsurface processeson hydrologic and thermal states in an Arctic polygonal ground ecosystem

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bisht, Gautam; Riley, William J.; Wainwright, Haruko M.

Microtopographic features, such as polygonal ground, are characteristic sources of landscape heterogeneity in the Alaskan Arctic coastal plain. We analyze the effects of snow redistribution (SR) and lateral subsurface processes on hydrologic and thermal states at a polygonal tundra site near Barrow, Alaska. We extended the land model integrated in the ACME Earth System Model (ESM) to redistribute incoming snow by accounting for microtopography and incorporated subsurface lateral transport of water and energy (ALMv0-3D). Three 10-years long simulations were performed for a transect across polygonal tundra landscape at the Barrow Environmental Observatory in Alaska to isolate the impact of SRmore » and subsurface process representation. When SR was included, model results show a better agreement (higher R 2 with lower bias and RMSE) for the observed differences in snow depth between polygonal rims and centers. The model was also able to accurately reproduce observed soil temperature vertical profiles in the polygon rims and centers (overall bias, RMSE, and R 2 of 0.59°C, 1.82°C, and 0.99, respectively). The spatial heterogeneity of snow depth during the winter due to SR generated surface soil temperature heterogeneity that propagated in depth and time and led to ~10 cm shallower and ~5 cm deeper maximum annual thaw depths under the polygon rims and centers, respectively. Additionally, SR led to spatial heterogeneity in surface energy fluxes and soil moisture during the summer. Excluding lateral subsurface hydrologic and thermal processes led to small effects on mean states but an overestimation of spatial variability in soil moisture and soil temperature as subsurface liquid pressure and thermal gradients were artificially prevented from spatially dissipating over time. The effect of lateral subsurface processes on active layer depths was modest with mean absolute difference of ~3 cm. Finally, our integration of three-dimensional subsurface hydrologic and thermal subsurface dynamics in the ACME land model will facilitate a wide range of analyses heretofore impossible in an ESM context.« less

Impacts of microtopographic snow-redistribution and lateral subsurface processeson hydrologic and thermal states in an Arctic polygonal ground ecosystem

DOE PAGES

Bisht, Gautam; Riley, William J.; Wainwright, Haruko M.; ...

2018-01-08

Microtopographic features, such as polygonal ground, are characteristic sources of landscape heterogeneity in the Alaskan Arctic coastal plain. We analyze the effects of snow redistribution (SR) and lateral subsurface processes on hydrologic and thermal states at a polygonal tundra site near Barrow, Alaska. We extended the land model integrated in the ACME Earth System Model (ESM) to redistribute incoming snow by accounting for microtopography and incorporated subsurface lateral transport of water and energy (ALMv0-3D). Three 10-years long simulations were performed for a transect across polygonal tundra landscape at the Barrow Environmental Observatory in Alaska to isolate the impact of SRmore » and subsurface process representation. When SR was included, model results show a better agreement (higher R 2 with lower bias and RMSE) for the observed differences in snow depth between polygonal rims and centers. The model was also able to accurately reproduce observed soil temperature vertical profiles in the polygon rims and centers (overall bias, RMSE, and R 2 of 0.59°C, 1.82°C, and 0.99, respectively). The spatial heterogeneity of snow depth during the winter due to SR generated surface soil temperature heterogeneity that propagated in depth and time and led to ~10 cm shallower and ~5 cm deeper maximum annual thaw depths under the polygon rims and centers, respectively. Additionally, SR led to spatial heterogeneity in surface energy fluxes and soil moisture during the summer. Excluding lateral subsurface hydrologic and thermal processes led to small effects on mean states but an overestimation of spatial variability in soil moisture and soil temperature as subsurface liquid pressure and thermal gradients were artificially prevented from spatially dissipating over time. The effect of lateral subsurface processes on active layer depths was modest with mean absolute difference of ~3 cm. Finally, our integration of three-dimensional subsurface hydrologic and thermal subsurface dynamics in the ACME land model will facilitate a wide range of analyses heretofore impossible in an ESM context.« less

Patterns of chlorophyll-a distribution linked to mesoscale structures in two contrasting areas Campeche Canyon and Bank, Southern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Durán-Campos, Elizabeth; Salas-de-León, David Alberto; Monreal-Gómez, María Adela; Coria-Monter, Erik

2017-05-01

The chlorophyll-a (Chl-a) distribution in Campeche Canyon and Campeche Bank, at the Southern Gulf of Mexico, as well as its relationship with hydrographic structure were analyzed. The results show the existence of the Gulf Common Water (GCW), the Caribbean Tropical Surface Water (CTSW) and the Caribbean Subtropical Underwater (CSUW) in the 120 m upper layer at the Campeche Canyon. While at the Campeche Bank only the Caribbean Tropical Surface Water (CTSW) was found. The 15 °C and 18.5 °C isotherms topography depict the presence of a mesoscale anticyclone-cyclone dipole. The nutrient pumping mechanism fertilizes the eutrophic zone promoted by the cyclonic eddy. Submesoscale processes in the border of an anticyclone and a cyclone results in maximum of nitrate concentration and vertically integrated Chl-a at the frontal zone. Two Chl-a vertical distribution patterns were found, a deep maximum at the base of the euphotic layer not associated to the thermocline over the Campeche Canyon and a peak associated to the thermocline related to the shallow bottom at the Campeche Bank. Oligotrophic conditions were observed in the 50 m upper layer and mesotrophic conditions were found below this layer. The differences between the Campeche Bank and Campeche Canyon are that: in the canyon, the nutrient and Chl-a peaks were linked with the cyclone, and the submesoscale processes in the border of an anticyclone and a cyclone, respectively. In the vertical the maximum Chl-a was associated to the base of the euphotic layer and dominated by coccolithophores. In the Campeche Bank the nutrient and Chl-a peaks were influenced by the shelf break in the vertical the maximum Chl-a was associated with the thermocline and the silicoflagellate was identified as the dominant species.

[Effects of NaCl stress on photosynthesis characteristics and fast chlorophyll fluorescence induction dynamics of Pistacia chinensis leaves].

PubMed

Li, Xu-Xin; Liu, Bing-Xiang; Guo, Zhi-Tao; Chang, Yue-Xia; He, Lei; Chen, Fang; Lu, Bing-She

2013-09-01

By using fast chlorophyll fluorescence induction dynamics analysis technique (JIP-test), this paper studied the photosynthesis characteristics and fast chlorophyll fluorescence induction dynamics of 1-year old Pistacia chinensis seedlings under the stress of NaCl at the concentrations 0% (CK), 0.15%, 0.3%, 0.45%, and 0.6%. With the increasing concentration of NaCl, the contents of Chl a, Chl b, and Chl (a+b) in the seedlings leaves decreased, the Chl a/b ratio decreased after an initial increase, and the carotenoid content increased. The net photosynthetic rate (P(n)) and stomatal conductance (g(s)) decreased gradually with increasing NaCl concentration. The decrease of P(n) was mainly attributed to the stomatal limitation when the NaCl concentration was lower than 0.3%, and to the non-stomatal limitation when the NaCl concentration was higher than 0.3%. The trapped energy flux per RC (TR0/CS0), electron transport flux per RC (ET0/CS0), density of RCs (RC/CS0), and yield or flux ratio (psi(0) or phi(E0)) decreased, but the absorption flux per CS (ABS/CS0) and the K phase (W(k)) and J phase (V) in the O-J-I-P chlorophyll fluorescence induction curves increased distinctly, indicating that NaCl stress damaged the leaf oxygen-evolving complex (OEC), donor sides, and PS II reaction centers. When the NaCl concentration reached 0.3%, the maximum photochemical efficiency (F(v)/F(m)) and performance index (PI(ABS)) decreased 17.7% and 36.6%, respectively, as compared with the control.

Contrasting patterns of phytoplankton pigments and chemotaxonomic groups along 30°S in the subtropical South Atlantic Ocean

NASA Astrophysics Data System (ADS)

Araujo, Milton Luiz Vieira; Mendes, Carlos Rafael Borges; Tavano, Virginia Maria; Garcia, Carlos Alberto Eiras; Baringer, Molly O'Neil

2017-02-01

This work describes the spatial distribution of pigments and main taxonomic groups of phytoplankton in the biogeochemical provinces of the subtropical South Atlantic Ocean, along 30°S latitude. Seawater samples (surface to 200 m depth) were collected along 120 oceanographic stations occupied in the early austral spring of 2011, during a CLIVAR Repeat Hydrography cruise. The pigments were identified and quantified by high performance liquid chromatography (HPLC), and CHEMTAX software was used to determine the relative contributions of the main taxonomic groups to total chlorophyll a (phytoplankton biomass index). Sampling stations were grouped into three provinces: Africa, Gyre, and Brazil, corresponding to the eastern, central, and western sectors of the transect, respectively. Our results showed that both vertical and horizontal distribution patterns of pigments and taxonomic groups were mainly determined by the availability of light and/or nutrients. Photosynthetic carotenoids (PSCs), associated with small flagellates (mainly haptophytes), dominated the light-limited and nutrient-enhanced deep chlorophyll maximum (DCM) layers of both the Brazil and Gyre provinces, as well as the upwelling influenced surface waters of the Africa province. The latter showed the highest chlorophyll a values ​​(>1 mg m-3) and abundance of dinoflagellates in the coastal region. Photoprotective carotenoids (PPCs) were predominant in the nutrient-poor and well-lit surface layers of the Brazil and Gyre provinces, associated with a low content of chlorophyll a ( 0.1 mg m-3) and dominance of prokaryotes (Synechoccocus and Prochloroccocus). This study demonstrates that pigment analysis can provide a useful approach to better understand the distribution of phytoplankton communities along physical-chemical gradients in a still undersampled region of the South Atlantic Ocean.

A 3-D ecosystem model in the Pacific Ocean and its simulations

NASA Astrophysics Data System (ADS)

Xu, Y.; Ba, Q.

2011-12-01

A simple 3-D ecosystem model with nutrient, phytoplankton, zooplankton and detritus is coupled into the basinwide ocean general circulation (OGCM) of the Pacific Ocean that has been examined by the passive tracer such as tritium. The model was integrated for 500 years under the forcing of climatological monthly mean fields. The model generates similar distribution patterns of ecosystem variables to the estimates based on satellite-derived chlorophyll maps by vertically generalized production model with low water-column NPP values in the subtropical region and high values in the subarctic region and equatorial upwelling region. But the area and strength of oligotrophic gyre is much larger than that indicated in the observations. Compared with the observations, seasonal variations of surface chlorophyll concentrations and top 200-m average zooplankton biomass in the mid-high latitude regions are well simulated in the model. Because of the restoring term near the northern boundary used in the model, a false phytoplankton bloom can occur nearby 50N during winter time. An unrealistic maximum value in the vertical profile of chlorophyll near ocean weather station Papa is generated by our model. In terms of modification of model structure and sensitivity test of the associated parameters, the simulated results can be well improved. Although the division of nutrient into nitrate and ammonium and inclusion of DON in the model can alleviate the low-NPP problem in the subtropical region, modification of the sinking rate and decomposition rate of detritus in the model can be more effective. Introduction of the influence of mixed layer on the ecosystem process and modification of restraint of nutrients near the northern boundary can overcome the shortcomings of simulation of both spring bloom near 50N and vertical profile of chlorophyll at Papa to some extent.

Monsoon-induced changes in the size-fractionated phytoplankton biomass and production rate in the estuarine and coastal waters of southwest coast of India.

PubMed

Madhu, N V; Jyothibabu, R; Balachandran, K K

2010-07-01

Changes in the autotrophic pico- (0.2-2 microm), nano- (2-20 microm), and microplankton (>20 microm) biomass (chlorophyll a) and primary production were measured in the estuarine and coastal waters off Cochin, southwest coast of India during the onset and establishment of a monsoon. During this period, the estuary was dominated by nutrient-rich freshwater, whereas the coastal waters were characterized with higher salinity values (>30 psu) and less nutrients. The average surface chlorophyll a concentrations and primary production rates were higher in the estuary (average 13.7 mg m(-3) and 432 mgC m(-3) day(-1)) as compared to the coastal waters (5.3 mg m(-3) and 224 mgC m(-3) day(-1)). The nanoplankton community formed the major fraction of chlorophyll a and primary production, both in the estuary (average 85 +/- SD 8.3% and 81.2 +/- SD 3.2%) and the coastal waters (average 73.2 +/- SD 17.2% and 81.9 +/- 15.7%). Nanoplankton had the maximum photosynthetic efficiency in the coastal waters (average 4.8 +/- SD 3.9 mgC mgChl a m(-3) h(-1)), whereas in the estuary, the microplankton had higher photosynthetic efficiency (average 7.4 +/- 7 mgC mgChl a m(-3) h(-1)). The heavy cloud cover and increased water column turbidity not only limit the growth of large-sized phytoplankton in the Cochin estuary and coastal waters but also support the proliferation of nanoplankton community during the monsoon season, even though large variation in nanoplankton chlorophyll a and production exists between these two areas.

Tying Biological Activity to Changes in Sea Spray Aerosol Chemical Composition via Single Particle Analyses

NASA Astrophysics Data System (ADS)

Sultana, C. M.; Lee, C.; Collins, D. B.; Axson, J. L.; Laskina, O.; Grandquist, J. R.; Grassian, V. H.; Prather, K. A.

2014-12-01

In remote marine environments, sea spray aerosols (SSA) often represent the greatest aerosol burden, thus having significant impacts on direct radiative interactions and cloud processes. Previous studies have shown that SSA is a complex mixture of inorganic salts and an array of dissolved and particulate organic components. Enrichment of SSA organic content is often correlated to seawater chlorophyll concentrations, a measure of oceanic biological activity. As the physical and chemical properties of aerosols control their radiative effects, recent studies conducted by the Center for Aerosol Impacts on Climate and the Environment have endeavored to further elucidate the ties between marine biological activity and primary SSA chemical composition using highly time resolved single particle analyses. A series of experiments performed in the recently developed Marine Aerosol Reference Tank evaluated the effect of changing marine microbial populations on SSA chemical composition, which was monitored via an aerosol time-of-flight mass spectrometer and a variety of offline spectroscopic and microscopic techniques. Each experiment was initiated using unfiltered and untreated seawater, thus maintaining a high level of biogeochemical complexity. This study is the first of its kind to capture daily changes in the primary SSA mixing state over the growth and death of a natural phytoplankton bloom. Increases in organic aerosol types (0.4-3 μm), internally and externally mixed with sea salt, could not be correlated to chlorophyll concentrations. Maximum production of these populations occurred two to four days after the in vivo chlorophyll fluorescence peaked in intensity. This work is in contrast to the current paradigm of correlating SSA organic content to seawater chlorophyll concentration.

Ecotoxicity of two organophosphate pesticides chlorpyrifos and dichlorvos on non-targeting cyanobacteria Microcystis wesenbergii.

PubMed

Sun, Kai-Feng; Xu, Xiang-Rong; Duan, Shun-Shan; Wang, You-Shao; Cheng, Hao; Zhang, Zai-Wang; Zhou, Guang-Jie; Hong, Yi-Guo

2015-10-01

Organophosphate pesticides (OPs), as a replacement for the organochlorine pesticides, are generally considered non-toxic to plants and algae. Chlorpyrifos and dichlorvos are two OPs used for pest control all over the world. In this study, the dose-response of cyanobacteria Microcystis wesenbergii on OPs exposure and the stimulating effect of OPs with and without phosphorus source were investigated. The results showed that high concentrations of chlorpyrifos and dichlorvos caused significant decrease of chlorophyll a content. The median inhibitory concentrations (EC50) of chlorpyrifos and dichlorvos at 96 h were 15.40 and 261.16 μmol L(-1), respectively. Growth of M. wesenbergii under low concentration of OPs (ranged from 1/10,000 to 1/20 EC50), was increased by 35.85 % (chlorpyrifos) and 41.83 % (dichlorvos) at 120 h, respectively. Correspondingly, the highest enhancement on the maximum quantum yield (F v/F m) was 4.20 % (24 h) and 9.70 % (48 h), respectively. Chlorophyll fluorescence kinetics, known as O-J-I-P transients, showed significant enhancements in the O-J, J-I, and I-P transients under low concentrations of dichlorvos at 144 h, while enhancements of chlorophyll fluorescence kinetics induced by low concentrations of chlorpyrifos were only observed in the J-I transient at 144 h. Significant decreases of chlorophyll content, F v/F m and O-J-I-P transients with OPs as sole phosphorus source were found when they were compared with inorganic phosphate treatments. The results demonstrated an evidently hormetic dose-response of M. wesenbergii to both chlorpyrifos and dichlorvos, where high dose (far beyond environmental concentrations) exposure caused growth inhibition and low dose exposure induced enhancement on physiological processes. The stimulating effect of two OPs on growth of M. wesenbergii was negligible under phosphate limitation.

Visualization of Au Nanoparticles Buried in a Polymer Matrix by Scanning Thermal Noise Microscopy

PubMed Central

Yao, Atsushi; Kobayashi, Kei; Nosaka, Shunta; Kimura, Kuniko; Yamada, Hirofumi

2017-01-01

Several researchers have recently demonstrated visualization of subsurface features with a nanometer-scale resolution using various imaging schemes based on atomic force microscopy. Since all these subsurface imaging techniques require excitation of the oscillation of the cantilever and/or sample surface, it has been difficult to identify a key imaging mechanism. Here we demonstrate visualization of Au nanoparticles buried 300 nm into a polymer matrix by measurement of the thermal noise spectrum of a microcantilever with a tip in contact to the polymer surface. We show that the subsurface Au nanoparticles are detected as the variation in the contact stiffness and damping reflecting the viscoelastic properties of the polymer surface. The variation in the contact stiffness well agrees with the effective stiffness of a simple one-dimensional model, which is consistent with the fact that the maximum depth range of the technique is far beyond the extent of the contact stress field. PMID:28210001

Fluorescence of the various red antenna states in photosystem I complexes from cyanobacteria is affected differently by the redox state of P700.

PubMed

Schlodder, Eberhard; Hussels, Martin; Cetin, Marianne; Karapetyan, Navassard V; Brecht, Marc

2011-11-01

Photosystem I of cyanobacteria contains different spectral pools of chlorophylls called red or long-wavelength chlorophylls that absorb at longer wavelengths than the primary electron donor P700. We measured the fluorescence spectra at the ensemble and the single-molecule level at low temperatures in the presence of oxidized and reduced P700. In accordance with the literature, it was observed that the fluorescence is quenched by P700(+). However, the efficiency of the fluorescence quenching by oxidized P700(+) was found to be extremely different for the various red states in PS I from different cyanobacteria. The emission of the longest-wavelength absorbing antenna state in PS I trimers from Thermosynechococcus elongatus (absorption maximum at 5K: ≈ 719nm; emission maximum at 5K: ≈ 740nm) was found to be strongly quenched by P700(+) similar to the reddest state in PS I trimers from Arthrospira platensis emitting at 760nm at 5K. The fluorescence of these red states is diminished by more than a factor of 10 in the presence of oxidized P700. For the first time, the emission of the reddest states in A. platensis and T. elongatus has been monitored using single-molecule fluorescence techniques. 2011 Elsevier B.V. All rights reserved.

Distribution and potential sources and sinks of copper chelators in the Sargasso Sea

NASA Astrophysics Data System (ADS)

Moffett, J. W.; Zika, R. G.; Brand, L. E.

1990-01-01

Copper speciation has been studied at an oligotrophic station in the southwestern Sargasso Sea to determine the distribution of Cu binding ligands and evaluate their potential sources and sinks. Speciation was studied using a ligand exchange/liquid-liquid partition procedure used in a previous study in Florida coastal waters [ MOFFET and ZIKA (1987a) Marine Chemistry, 21, 301-313]. Copper speciation was dominated by organic complexation at all depths studied (16-950 m). Complexation was greatest in the region of the chlorophyll maximum. In this region, speciation was dominated by two ligands or ligand classes; L 1, with K cond. = 10 13.2, concentration = 2 nM, and a weaker but more abundant ligand class, L 2 with Kincond. = 10 9.7, concentration = 80 nM. From 140 to 16 m, [Cu(II)] free/[Cu(II)] total increases by a factor of 20, due to a decrease in [L 1] to a value below the ambient Cu concentration. Exposure of water from 140 m to sunlight indicated that photochemical decomposition of L 1 may account for the decrease. Below the chlorophyll maximum there is a gradual increase in [Cu(II)] free/[Cu(II)] total suggesting that the ligands are of recent biological origin rather than derived from refractory materials. Cultures of a ubiquitous marine cyanobacterium, Synechococcus sp. produced a ligand with K cond. comparable to L 1, indicating that a biological source is plausible.

Physiological and Biochemical Response of the Photosynthetic Apparatus of Two Marine Diatoms to Fe Stress.

PubMed Central

McKay, R. M. L.; Geider, R. J.; LaRoche, J.

1997-01-01

Flavodoxin is a small electron-transfer protein capable of replacing ferredoxin during periods of Fe deficiency. When evaluating the suitability of flavodoxin as a diagnostic indicator for Fe limitation of phytoplankton growth, we examined its expression in two marine diatoms we cultured using trace-metal-buffered medium. Thalassio-sira weissflogii and Phaeodactylum tricornutum were cultured in ethylenediaminetetraacetic acid-buffered Sargasso Sea water containing from 10 to 1000 nM added Fe. Trace-metal-buffered cultures of each diatom maintained high growth rates across the entire range of Fe additions. Similarly, declines in chlorophyll/cell and in the ratio of photosystem II variable-to-maximum fluorescence were negligible (P. tricornutum) to moderate (T. weissflogii; 54% decline in chlorophyll/cell and 22% decrease in variable-to-maximum fluorescence). Moreover, only minor variations in photosynthetic parameters were observed across the range of additions. In contrast, flavodoxin was expressed to high levels in low-Fe cultures. Despite the inverse relationship between flavodoxin expression and Fe content of the medium, its expression was seemingly independent of any of the indicators of cell physiology that were assayed. It appears that flavodoxin is expressed as an early-stage response to Fe stress and that its accumulation need not be intimately connected to limitations imposed by Fe on the growth rate of these diatoms. PMID:12223732

The dynamics of suspended particulate matter (SPM) and chlorophyll-a from intratidal to annual time scales in a coastal turbidity maximum

NASA Astrophysics Data System (ADS)

van der Hout, C. M.; Witbaard, R.; Bergman, M. J. N.; Duineveld, G. C. A.; Rozemeijer, M. J. C.; Gerkema, T.

2017-09-01

The analysis of 1.8 years of data gives an understanding of the response to varying forcing of suspended particulate matter (SPM) and chlorophyll-a (CHL-a) in a coastal turbidity maximum zone (TMZ). Both temporal and vertical concentration variations in the near-bed layer (0-2 m) in the shallow (11 m deep) coastal zone at 1 km off the Dutch coast are shown. Temporal variations in the concentration of both parameters are found on tidal and seasonal scales, and a marked response to episodic events (e.g. storms). The seasonal cycle in the near-bed CHL-a concentration is determined by the spring bloom. The role of the wave climate as the primary forcing in the SPM seasonal cycle is discussed. The tidal current provides a background signal, generated predominantly by local resuspension and settling and a minor role is for advection in the cross-shore and the alongshore direction. We tested the logarithmic Rouse profile to the vertical profiles of both the SPM and the CHL-a data, with respectively 84% and only 2% success. The resulting large percentage of low Rouse numbers for the SPM profiles suggest a mixed suspension is dominant in the TMZ, i.e. surface SPM concentrations are in the same order of magnitude as near-bed concentrations.

Temporal and Spatial Patterns of Plankton and Microbial Dynamics in the Offshore Gulf of Mexico After the Deepwater Horizon Oil Spill

NASA Astrophysics Data System (ADS)

Sutor, M.; Longnecker, K.

2016-02-01

The oligotrophic regions of the world oceans represent large and important marine ecosystems. The vast majority of animals in these zones are plankton and marine microbes and they play a key role in the export of carbon and organic matter to seafloor benthic communities and higher trophic levels. There is little published data on the ecology of plankton and microbes in the offshore waters of the Northern Gulf of Mexico. In the wake of the Deepwater Horizon oil spill, which was a primarily oceanic event, it is clear that understanding the microbial and planktonic community and how it responded to this event is critical to interpret any observed changes at higher trophic levels (i.e. fish). We conducted three cruises in the spring of 2011, 2012, and 2013 and measured the primary production, respiration, bacterial production, and community composition of plankton and marine microbes. The data show that there are important differences in these parameters between the surface waters and the deep chlorophyll maximum and proximity to the spill site in 2011. Spatial patterns in relation to the spill site are not pronounced in 2012 and 2013. These data represent an important estimate of the microbial and planktonic community ecology of this region and demonstrate the important role the deep chlorophyll maximum plays in this system.

Response of ocean ecosystems to climate warming

NASA Astrophysics Data System (ADS)

Sarmiento, J. L.; Slater, R.; Barber, R.; Bopp, L.; Doney, S. C.; Hirst, A. C.; Kleypas, J.; Matear, R.; Mikolajewicz, U.; Monfray, P.; Soldatov, V.; Spall, S. A.; Stouffer, R.

2004-09-01

We examine six different coupled climate model simulations to determine the ocean biological response to climate warming between the beginning of the industrial revolution and 2050. We use vertical velocity, maximum winter mixed layer depth, and sea ice cover to define six biomes. Climate warming leads to a contraction of the highly productive marginal sea ice biome by 42% in the Northern Hemisphere and 17% in the Southern Hemisphere, and leads to an expansion of the low productivity permanently stratified subtropical gyre biome by 4.0% in the Northern Hemisphere and 9.4% in the Southern Hemisphere. In between these, the subpolar gyre biome expands by 16% in the Northern Hemisphere and 7% in the Southern Hemisphere, and the seasonally stratified subtropical gyre contracts by 11% in both hemispheres. The low-latitude (mostly coastal) upwelling biome area changes only modestly. Vertical stratification increases, which would be expected to decrease nutrient supply everywhere, but increase the growing season length in high latitudes. We use satellite ocean color and climatological observations to develop an empirical model for predicting chlorophyll from the physical properties of the global warming simulations. Four features stand out in the response to global warming: (1) a drop in chlorophyll in the North Pacific due primarily to retreat of the marginal sea ice biome, (2) a tendency toward an increase in chlorophyll in the North Atlantic due to a complex combination of factors, (3) an increase in chlorophyll in the Southern Ocean due primarily to the retreat of and changes at the northern boundary of the marginal sea ice zone, and (4) a tendency toward a decrease in chlorophyll adjacent to the Antarctic continent due primarily to freshening within the marginal sea ice zone. We use three different primary production algorithms to estimate the response of primary production to climate warming based on our estimated chlorophyll concentrations. The three algorithms give a global increase in primary production of 0.7% at the low end to 8.1% at the high end, with very large regional differences. The main cause of both the response to warming and the variation between algorithms is the temperature sensitivity of the primary production algorithms. We also show results for the period between the industrial revolution and 2050 and 2090.

Establishment of integrated protocols for automated high throughput kinetic chlorophyll fluorescence analyses.

PubMed

Tschiersch, Henning; Junker, Astrid; Meyer, Rhonda C; Altmann, Thomas

2017-01-01

Automated plant phenotyping has been established as a powerful new tool in studying plant growth, development and response to various types of biotic or abiotic stressors. Respective facilities mainly apply non-invasive imaging based methods, which enable the continuous quantification of the dynamics of plant growth and physiology during developmental progression. However, especially for plants of larger size, integrative, automated and high throughput measurements of complex physiological parameters such as photosystem II efficiency determined through kinetic chlorophyll fluorescence analysis remain a challenge. We present the technical installations and the establishment of experimental procedures that allow the integrated high throughput imaging of all commonly determined PSII parameters for small and large plants using kinetic chlorophyll fluorescence imaging systems (FluorCam, PSI) integrated into automated phenotyping facilities (Scanalyzer, LemnaTec). Besides determination of the maximum PSII efficiency, we focused on implementation of high throughput amenable protocols recording PSII operating efficiency (Φ PSII ). Using the presented setup, this parameter is shown to be reproducibly measured in differently sized plants despite the corresponding variation in distance between plants and light source that caused small differences in incident light intensity. Values of Φ PSII obtained with the automated chlorophyll fluorescence imaging setup correlated very well with conventionally determined data using a spot-measuring chlorophyll fluorometer. The established high throughput operating protocols enable the screening of up to 1080 small and 184 large plants per hour, respectively. The application of the implemented high throughput protocols is demonstrated in screening experiments performed with large Arabidopsis and maize populations assessing natural variation in PSII efficiency. The incorporation of imaging systems suitable for kinetic chlorophyll fluorescence analysis leads to a substantial extension of the feature spectrum to be assessed in the presented high throughput automated plant phenotyping platforms, thus enabling the simultaneous assessment of plant architectural and biomass-related traits and their relations to physiological features such as PSII operating efficiency. The implemented high throughput protocols are applicable to a broad spectrum of model and crop plants of different sizes (up to 1.80 m height) and architectures. The deeper understanding of the relation of plant architecture, biomass formation and photosynthetic efficiency has a great potential with respect to crop and yield improvement strategies.

Physiological responses to nitrogen and sulphur addition and raised temperature in Sphagnum balticum.

PubMed

Granath, Gustaf; Wiedermann, Magdalena M; Strengbom, Joachim

2009-09-01

Sphagnum, the main genus which forms boreal peat, is strongly affected by N and S deposition and raised temperature, but the physiological mechanisms behind the responses are largely unknown. We measured maximum photosynthetic rate (NP(max)), maximum efficiency of photosystem II [variable fluorescence (F (v))/maximum fluorescence yield (F (m))] and concentrations of N, C, chlorophyll and carotenoids as responses to N and S addition and increased temperature in Sphagnum balticum (a widespread species in the northern peatlands) in a 12-year factorial experiment. NP(max) did not differ between control (0.2 g N m(-2) year(-1)) and high N (3.0 g N m(-2) year(-1)), but was higher in the mid N treatment (1.5 g N m(-2) year(-1)). N, C, carotenoids and chlorophyll concentration increased in shoot apices after N addition. F (v)/F (m) did not differ between N treatments. Increased temperature (+3.6 degrees C) had a small negative effect on N concentration, but had no significant effect on NP(max) or F (v)/F (m). Addition of 2 g S m(-2) year(-1) showed a weak negative effect on NP(max) and F (v)/F (m). Our results suggest a unimodal response of NP(max) to N addition and tissue N concentration in S. balticum, with an optimum N concentration for photosynthetic rate of ~13 mg N g(-1). In conclusion, high S deposition may reduce photosynthetic capacity in Sphagnum, but the negative effects may be relaxed under high N availability. We suggest that previously reported negative effects on Sphagnum productivity under high N deposition are not related to negative effects on the photosynthetic apparatus, but differences in optimum N concentration among Sphagnum species may affect their competitive ability under different N deposition regimes.

Impact of Monsoon to Aquatic Productivity and Fish Landing at Pesawaran Regency Waters

NASA Astrophysics Data System (ADS)

Kunarso; Zainuri, Muhammad; Ario, Raden; Munandar, Bayu; Prayogi, Harmon

2018-02-01

Monsoon variability influences the productivity processes in the ocean and has different responses in each waters. Furthermore, variability of marine productivity affects to the fisheries resources fluctuation. This research has conducted using descriptive method to investigate the consequences of monsoon variability to aquatic productivity, sea surface temperature (SST), fish catches, and fish season periods at Pesawaran Regency waters, Lampung. Variability of aquatic productivity was determined based on chlorophyll-a indicator from MODIS satellite images. Monsoon variability was governed based on wind parameters and fish catches from fish landing data of Pesawaran fish market. The result showed that monsoon variability had affected to aquatic productivity, SST, and fish catches at Pesawaran Regency waters. Maximum wind speed and lowest SST occurred twice in a year, December to March and August to October, which the peaks were on January (2.55 m/s of wind speed and 29.66°C of SST) and September (2.44 m/s of wind speed and 29.06°C of SST). Also, Maximum aquatic productivity happened on January to March and July to September, which it was arisen simultaneously with maximum wind speed and the peaks was 0.74 mg/m3 and 0.78 mg/m3, on February and August respectively. The data showed that fish catches decreased along with strong wind speed and low SST. However, when weak wind speed and high SST occurred, fish catches increased. The correlation between Catch per Unit Effort (CPUE) with SST, wind speed, and chlorophyll-a was at value 0.76, -0.67, and -0.70, respectively. The high rate fish catches in Pesawaran emerged on March-May and September-December.

Modeling of depth to base of Last Glacial Maximum and seafloor sediment thickness for the California State Waters Map Series, eastern Santa Barbara Channel, California

USGS Publications Warehouse

Wong, Florence L.; Phillips, Eleyne L.; Johnson, Samuel Y.; Sliter, Ray W.

2012-01-01

Models of the depth to the base of Last Glacial Maximum and sediment thickness over the base of Last Glacial Maximum for the eastern Santa Barbara Channel are a key part of the maps of shallow subsurface geology and structure for offshore Refugio to Hueneme Canyon, California, in the California State Waters Map Series. A satisfactory interpolation of the two datasets that accounted for regional geologic structure was developed using geographic information systems modeling and graphics software tools. Regional sediment volumes were determined from the model. Source data files suitable for geographic information systems mapping applications are provided.

Upper ocean climate of the Eastern Mediterranean Sea during the Holocene Insolation Maximum - a model study

NASA Astrophysics Data System (ADS)

Adloff, F.; Mikolajewicz, U.; Kučera, M.; Grimm, R.; Maier-Reimer, E.; Schmiedl, G.; Emeis, K.-C.

2011-10-01

Nine thousand years ago (9 ka BP), the Northern Hemisphere experienced enhanced seasonality caused by an orbital configuration close to the minimum of the precession index. To assess the impact of this "Holocene Insolation Maximum" (HIM) on the Mediterranean Sea, we use a regional ocean general circulation model forced by atmospheric input derived from global simulations. A stronger seasonal cycle is simulated by the model, which shows a relatively homogeneous winter cooling and a summer warming with well-defined spatial patterns, in particular, a subsurface warming in the Cretan and western Levantine areas. The comparison between the SST simulated for the HIM and a reconstruction from planktonic foraminifera transfer functions shows a poor agreement, especially for summer, when the vertical temperature gradient is strong. As a novel approach, we propose a reinterpretation of the reconstruction, to consider the conditions throughout the upper water column rather than at a single depth. We claim that such a depth-integrated approach is more adequate for surface temperature comparison purposes in a situation where the upper ocean structure in the past was different from the present-day. In this case, the depth-integrated interpretation of the proxy data strongly improves the agreement between modelled and reconstructed temperature signal with the subsurface summer warming being recorded by both model and proxies, with a small shift to the south in the model results. The mechanisms responsible for the peculiar subsurface pattern are found to be a combination of enhanced downwelling and wind mixing due to strengthened Etesian winds, and enhanced thermal forcing due to the stronger summer insolation in the Northern Hemisphere. Together, these processes induce a stronger heat transfer from the surface to the subsurface during late summer in the western Levantine; this leads to an enhanced heat piracy in this region, a process never identified before, but potentially characteristic of time slices with enhanced insolation.

Corrigendum to "Upper ocean climate of the Eastern Mediterranean Sea during the Holocene Insolation Maximum - a model study" published in Clim. Past, 7, 1103-1122, 2011

NASA Astrophysics Data System (ADS)

Adloff, F.; Mikolajewicz, U.; Kučera, M.; Grimm, R.; Maier-Reimer, E.; Schmiedl, G.; Emeis, K.-C.

2011-11-01

Nine thousand years ago (9 ka BP), the Northern Hemisphere experienced enhanced seasonality caused by an orbital configuration close to the minimum of the precession index. To assess the impact of this "Holocene Insolation Maximum" (HIM) on the Mediterranean Sea, we use a regional ocean general circulation model forced by atmospheric input derived from global simulations. A stronger seasonal cycle is simulated by the model, which shows a relatively homogeneous winter cooling and a summer warming with well-defined spatial patterns, in particular, a subsurface warming in the Cretan and western Levantine areas. The comparison between the SST simulated for the HIM and a reconstruction from planktonic foraminifera transfer functions shows a poor agreement, especially for summer, when the vertical temperature gradient is strong. As a novel approach, we propose a reinterpretation of the reconstruction, to consider the conditions throughout the upper water column rather than at a single depth. We claim that such a depth-integrated approach is more adequate for surface temperature comparison purposes in a situation where the upper ocean structure in the past was different from the present-day. In this case, the depth-integrated interpretation of the proxy data strongly improves the agreement between modelled and reconstructed temperature signal with the subsurface summer warming being recorded by both model and proxies, with a small shift to the south in the model results. The mechanisms responsible for the peculiar subsurface pattern are found to be a combination of enhanced downwelling and wind mixing due to strengthened Etesian winds, and enhanced thermal forcing due to the stronger summer insolation in the Northern Hemisphere. Together, these processes induce a stronger heat transfer from the surface to the subsurface during late summer in the western Levantine; this leads to an enhanced heat piracy in this region, a process never identified before, but potentially characteristic of time slices with enhanced insolation.

Early stage de-etiolation increases the ferulic acid content in winter triticale seedlings under full sunlight conditions.

PubMed

Hura, Tomasz; Hura, Katarzyna; Grzesiak, Maciej

2010-12-02

In the presented work an attempt has been made to estimate the phenolics content and its implication for the protection of the photosynthetic apparatus in course of a plant's de-etiolation. The experiments were carried out on two genotypes of winter triticale varying in their resistance to drought. The activity of the photosynthetic apparatus was monitored by taking measurements of chlorophyll fluorescence and chlorophyll/carotenoids content. Analyses of the total pool of phenolic compounds and ferulic acid as well as l-phenylalanine ammonia lyase activity were completed. The first illuminations of etiolated seedlings induced a chlorophyll synthesis, which was followed by the increasing activity of the photosynthetic apparatus in both studied genotypes. Piano exhibited a higher values of the maximum quantum efficiency of photosystem II primary photochemistry during de-etiolation than Imperial. These results may just indicate that for Imperial, the delivery of photons to the reaction centres exceeded the capacity of the photosynthetic apparatus to transduce this energy via electron transport. An increase in the content of ferulic acid was more noticeable for Piano and seems to be a consequence of adaptation to the new light conditions. It should be taken into account, that an increase of ferulic acid content during early stage of de-etiolation, may limit the photoinhibition of photosynthesis whenever radiation is excessive for the photosynthetic apparatus. Copyright © 2010 Elsevier B.V. All rights reserved.

Assessment of remotely sensed chlorophyll-a concentration in Guanabara Bay, Brazil

NASA Astrophysics Data System (ADS)

Oliveira, Eduardo N.; Fernandes, Alexandre M.; Kampel, Milton; Cordeiro, Renato C.; Brandini, Nilva; Vinzon, Susana B.; Grassi, Renata M.; Pinto, Fernando N.; Fillipo, Alessandro M.; Paranhos, Rodolfo

2016-04-01

The Guanabara Bay (GB) is an estuarine system in the metropolitan region of Rio de Janeiro (Brazil), with a surface area of ˜346 km2 threatened by anthropogenic pressure. Remote sensing can provide frequent data for studies and monitoring of water quality parameters, such as chlorophyll-a concentration (Chl-a). Different combination of Medium Resolution Imaging Spectrometer (MERIS) remote sensing reflectance band ratios were used to estimate Chl-a. Standard algorithms such as Ocean Color 3-band, Ocean Color-4 band, fluorescence line height, and maximum chlorophyll index were also tested. The MERIS Chl-a estimates were statistically compared with a dataset of in situ Chl-a (2002 to 2012). Good correlations were obtained with the use of green, red, and near-infrared bands. The best performing algorithm was based on the red (665 nm) and green (560 nm) band ratio, named "RG3" algorithm (r2=0.71, chl-a=62,565*x1.6118). The RG3 was applied to a time series of MERIS images (2003- to 2012). The GB has a high temporal and spatial variability of Chl-a, with highest values found in the wet season (October to March) and in some of the most internal regions of the estuary. Lowest concentrations are found in the central circulation channel due to the flushing of ocean water masses promoted by pumping tide.

Photosynthetic Physiological Response of Radix Isatidis (Isatis indigotica Fort.) Seedlings to Nicosulfuron

PubMed Central

Ning, Na; Wen, Yinyuan; Dong, Shuqi; Yin, Meiqiang; Guo, Meijun; Wang, Binqiang; Feng, Lei; Guo, Pingyi

2014-01-01

Radix Isatidis (Isatis indigotica Fort.) is one of the most important traditional Chinese medicine plants. However, there is no suitable herbicide used for weed control in Radix Isatidis field during postemergence stage. To explore the safety of sulfonylurea herbicide nicosulfuron on Radix Isatidis (Isatis indigotica Fort.) seedlings and the photosynthetic physiological response of the plant to the herbicide, biological mass, leaf area, photosynthetic pigment content, photosynthetic rate, chlorophyll fluorescence characteristics, and P700 parameters of Radix Isatidis seedlings were analyzed 10 d after nicosulfuron treatment at 5th leaf stage in this greenhouse research. The results showed that biological mass, total chlorophyll, chlorophyll a, and carotenoids content, photosynthetic rate, stomatal conductance, PS II maximum quantum yield, PS II effective quantum yield, PS II electron transport rate, photochemical quenching, maximal P700 change, photochemical quantum yield of PS I, and PS I electron transport rate decreased with increasing herbicide concentrations, whereas initial fluorescence, quantum yield of non-regulated energy dissipation in PS II and quantum yield of non-photochemical energy dissipation due to acceptor side limitation in PS I increased. It suggests that nicosulfuron ≥1 mg L−1 causes the damage of chloroplast, PS II and PS I structure. Electron transport limitations in PS I receptor side, and blocked dark reaction process may be the main cause of the significantly inhibited growth and decreased photosynthetic rate of Radix Isatidis seedlings. PMID:25165819

Imaging of fast chlorophyll fluorescence induction curve (OJIP) parameters, applied in a screening study with wild barley (Hordeum spontaneum) genotypes under heat stress.

PubMed

Jedmowski, Christoph; Brüggemann, Wolfgang

2015-10-01

We quantified the influence of heat stress (HS) on PSII by imaging of parameters of the fast chlorophyll fluorescence (CF) induction (OJIP) kinetic of 20 genotypes of wild barley (Hordeum spontaneum) covering a broad geographical spectrum. We developed a standardised screening procedure, allowing a repetitive fluorescence measurement of leaf segments. The impact of HS was quantified by calculating a Heat Resistance Index (HRI), derived from the decrease of the Performance Index (PI) caused by HS treatment and following recovery. For the genotype showing the lowest HRI, reduced maximum quantum yield (φP0) and increased relative variable fluorescence of the O-J phase (K-Peak) were detected after HS, whereas the basal fluorescence (F0) remained stable. An additional feature was a lowered fraction of active (QA-reducing) reaction centres (RCs). The disturbances disappeared after one day of recovery. Spatial heterogeneities of fluorescence parameters were detected, as the negative effect of HS was stronger in the leaf areas close to the leaf tip. The results of this study prove that chlorophyll fluorescence imaging (CFI) is suitable for the detection of HS symptoms and that imaging of JIP-Test parameters should be considered in future screening and phenotyping studies aiming for the characterisation of plant genotypes. Copyright © 2015 Elsevier B.V. All rights reserved.

Strategies of leaf expansion in Ficus carica under semiarid conditions.

PubMed

González-Rodríguez, A M; Peters, J

2010-05-01

Leaf area expansion, thickness and inclination, gas exchange parameters and relative chlorophyll content were analysed in field-grown fig (Ficus carica L.) leaves over time, from emergence until after full leaf expansion (FLE). Ficus carica leaves showed a subtle change in shape during the early stages of development, and FLE was reached within ca. 30 days after emergence. Changes in leaf thickness and inclination after FLE demonstrated good adaptation to environmental conditions during summer in areas with a Mediterranean climate. Changes in gas exchange parameters and relative chlorophyll content showed that F. carica is a delayed-greening species, reaching maximum values 20 days after FLE. Correlation analysis of datasets collected during leaf expansion, confirmed dependence among structural and functional traits in F. carica. Pn was directly correlated with stomatal conductance (Gs), transpiration (E), leaf area (LA) and relative chlorophyll content up to FLE. The effect of pruning on leaf expansion, a cultural technique commonly applied in this fruit tree, was also evaluated. Although leaf development in pruned branches gave a significantly higher relative leaf area growth rate (RGR(l)) and higher LA than non-pruned branches, no significant differences were found in other morphological and physiological traits, indicating no pruning effect on leaf development. All studied morphological and physiological characteristics indicate that F. carica is well adapted to semiarid conditions. The delayed greening strategy of this species is discussed.

Role of physical processes in chlorophyll distribution in the western tropical Indian Ocean

NASA Astrophysics Data System (ADS)

George, Jenson V.; Nuncio, M.; Chacko, Racheal; Anilkumar, N.; Noronha, Sharon B.; Patil, Shramik M.; Pavithran, Sini; Alappattu, Denny P.; Krishnan, K. P.; Achuthankutty, C. T.

2013-03-01

Physical control of the chlorophyll a (chl a) distribution in the western tropical Indian Ocean (WTIO, 8°N to 18°S along 65°E) was studied during the 2008 winter monsoon (WM) and the 2009 summer monsoon (SM). During both seasons, a prominent deep chlorophyll maximum (DCM, 0.3-0.5 mg m- 3) was observed at all stations between 8°N and 10°S in the depth range of 50-75 m, but south of 10°S, this phenomenon was observed as deeper (~ 120 m) and relatively weak (0.15-0.3 mg m- 3). During the SM, in addition to seasonal forcing, eddies and a freshened surface layer also played major roles in controlling the DCM and the surface chl a concentrations in the southern Arabian Sea and the equatorial Indian Ocean. During the WM, surface freshening controlled the chl a distribution in the Seychelles Chagos Thermocline Ridge (SCTR, 5°S-10°S) region by modulating the static stability and mixed layer depth. It appears that the surface freshening in this region is associated with the core of the South Equatorial Current. South of the SCTR, the chl a distribution was predominantly determined by the anti-cyclonic eddies in both seasons. The spatial patterns of the Sea Level Anomaly (SLA) followed most of the thermocline features observed during the study period.

Some Ecological Mechanisms to Generate Habitability in Planetary Subsurface Areas by Chemolithotrophic Communities: The Ro Tinto Subsurface Ecosystem as a Model System

NASA Astrophysics Data System (ADS)

Fernández-Remolar, David C.; Gómez, Felipe; Prieto-Ballesteros, Olga; Schelble, Rachel T.; Rodríguez, Nuria; Amiols, Ricardo

2008-02-01

Chemolithotrophic communities that colonize subsurface habitats have great relevance for the astrobiological exploration of our Solar System. We hypothesize that the chemical and thermal stabilization of an environment through microbial activity could make a given planetary region habitable. The MARTE project ground-truth drilling campaigns that sampled cryptic subsurface microbial communities in the basement of the Ro Tinto headwaters have shown that acidic surficial habitats are the result of the microbial oxidation of pyritic ores. The oxidation process is exothermic and releases heat under both aerobic and anaerobic conditions. These microbial communities can maintain the subsurface habitat temperature through storage heat if the subsurface temperature does not exceed their maximum growth temperature. In the acidic solutions of the Ro Tinto, ferric iron acts as an effective buffer for controlling water pH. Under anaerobic conditions, ferric iron is the oxidant used by microbes to decompose pyrite through the production of sulfate, ferrous iron, and protons. The integration between the physical and chemical processes mediated by microorganisms with those driven by the local geology and hydrology have led us to hypothesize that thermal and chemical regulation mechanisms exist in this environment and that these homeostatic mechanisms could play an essential role in creating habitable areas for other types of microorganisms. Therefore, searching for the physicochemical expression of extinct and extant homeostatic mechanisms through physical and chemical anomalies in the Mars crust (i.e., local thermal gradient or high concentration of unusual products such as ferric sulfates precipitated out from acidic solutions produced by hypothetical microbial communities) could be a first step in the search for biological traces of a putative extant or extinct Mars biosphere.

Some ecological mechanisms to generate habitability in planetary subsurface areas by chemolithotrophic communities: the Río Tinto subsurface ecosystem as a model system.

PubMed

Fernández-Remolar, David C; Gómez, Felipe; Prieto-Ballesteros, Olga; Schelble, Rachel T; Rodríguez, Nuria; Amils, Ricardo

2008-02-01

Chemolithotrophic communities that colonize subsurface habitats have great relevance for the astrobiological exploration of our Solar System. We hypothesize that the chemical and thermal stabilization of an environment through microbial activity could make a given planetary region habitable. The MARTE project ground-truth drilling campaigns that sampled cryptic subsurface microbial communities in the basement of the Río Tinto headwaters have shown that acidic surficial habitats are the result of the microbial oxidation of pyritic ores. The oxidation process is exothermic and releases heat under both aerobic and anaerobic conditions. These microbial communities can maintain the subsurface habitat temperature through storage heat if the subsurface temperature does not exceed their maximum growth temperature. In the acidic solutions of the Río Tinto, ferric iron acts as an effective buffer for controlling water pH. Under anaerobic conditions, ferric iron is the oxidant used by microbes to decompose pyrite through the production of sulfate, ferrous iron, and protons. The integration between the physical and chemical processes mediated by microorganisms with those driven by the local geology and hydrology have led us to hypothesize that thermal and chemical regulation mechanisms exist in this environment and that these homeostatic mechanisms could play an essential role in creating habitable areas for other types of microorganisms. Therefore, searching for the physicochemical expression of extinct and extant homeostatic mechanisms through physical and chemical anomalies in the Mars crust (i.e., local thermal gradient or high concentration of unusual products such as ferric sulfates precipitated out from acidic solutions produced by hypothetical microbial communities) could be a first step in the search for biological traces of a putative extant or extinct Mars biosphere.

Hydrodynamic control of phytoplankton loss to the benthos in an estuarine environment

USGS Publications Warehouse

Jones, Nicole L.; Thompson, Janet K.; Arrigo, Kevin R.; Monismith, Stephen G.

2009-01-01

Field experiments were undertaken to measure the influence of hydrodynamics on the removal of phytoplankton by benthic grazers in Suisun Slough, North San Francisco Bay. Chlorophyll a concentration boundary layers were found over beds inhabited by the active suspension feeders Corbula amurensis and Corophium alienense and the passive suspension feeders Marenzellaria viridis and Laonome sp. Benthic losses of phytoplankton were estimated via both the control volume and the vertical flux approach, in which chlorophyll a concentration was used as a proxy for phytoplankton biomass. The rate of phytoplankton loss to the bed was positively correlated to the bed shear stress. The maximum rate of phytoplankton loss to the bed was five times larger than estimated by laboratory-derived pumping rates for the active suspension feeders. Reasons for this discrepancy are explored including a physical mechanism whereby phytoplankton is entrained in a near-bed fluff layer where aggregation is mediated by the presence of mucus produced by the infaunal community.

Hydrodynamic control of phytoplankton loss to the benthos in an estuarine environment

USGS Publications Warehouse

Jones, N.L.; Thompson, J.K.; Arrigo, K.R.; Monismith, Stephen G.

2009-01-01

Field experiments were undertaken to measure the influence of hydrodynamics on the removal of phytoplankton by benthic grazers in Suisun Slough, North San Francisco Bay. Chlorophyll a concentration boundary layers were found over beds inhabited by the active suspension feeders Corbula amurensis and Corophium alienense and the passive suspension feeders Marenzellaria viridis and Laonome sp. Benthic losses of phytoplankton were estimated via both the control volume and the vertical flux approach, in which chlorophyll a concentration was used as a proxy for phytoplankton biomass. The rate of phytoplankton loss to the bed was positively correlated to the bed shear stress. The maximum rate of phytoplankton loss to the bed was five times larger than estimated by laboratory-derived pumping rates for the active suspension feeders. Reasons for this discrepancy are explored including a physical mechanism whereby phytoplankton is entrained in a near-bed fluff layer where aggregation is mediated by the presence of mucus produced by the infaunal community. ?? 2009, by the American Society of Limnology and Oceanography, Inc.

A simple fiber-optic microprobe for high resolution light measurements: application in marine sediment

NASA Technical Reports Server (NTRS)

Jorgensen, B. B.; Des Marais, D. J.

1986-01-01

A fiber-optic microphobe is described which is inexpensive and simple to build and use. It consists of an 80-micrometers optical fiber which at the end is tapered down to a rounded sensing tip of 20-30-micrometers diameter. The detector is a hybrid photodiode/amplifier. The probe has a sensitivity of 0.01 microEinst m-2 s-1 and a spectral range of 300-1,100 nm. Spectral light gradients were measured in fine-grained San Francisco Bay sediment that had an undisturbed diatom coating on the surface. The photic zone of the mud was only 0.4 mm deep. Measured in situ spectra showed extinction maxima at 430-520, 620-630, 670, and 825-850 nm due to absorption by chlorophyll a, carotenoids, phycocyanin, and bacterio-chlorophyll a. Maximum light penetration in the visible range was found in both the violet and the red < or = 400 and > or = 700 nm.

Using Survey Data to Determine a Numeric Criterion for Nutrient Pollution

NASA Astrophysics Data System (ADS)

Jakus, Paul M.; Nelson, Nanette; Ostermiller, Jeffrey

2017-12-01

We present a scientific replication of a benthic algae nuisance threshold study originally conducted in Montana, but we do so using a different sampling methodology in a different state. Respondents are asked to rate eight photographs that depict varying algae conditions. Our initial results show that Utah resident preferences for benthic algae levels are quite similar to those of Montana residents, thus replicating the Montana study. For the full Utah sample, though, Cronbach's α indicated poor internal consistency in rating the photographs, so a "monotonicity rule" was used to identify respondents providing monotonic preferences with respect to chlorophyll a densities. Simple graphical analyses are combined with ordered probit analysis to determine the maximum desirable density of chlorophyll a (Chl a). Our analysis indicates that Chl a levels in excess of 150 mg Chl a/m2 are undesirable, but the regression model suggests that those with strictly monotonic preferences were far more likely favor a more stringent standard.

Unique chlorophylls in picoplankton Prochlorococcus sp. "Physicochemical properties of divinyl chlorophylls, and the discovery of monovinyl chlorophyll b as well as divinyl chlorophyll b in the species Prochlorococcus NIES-2086".

PubMed

Komatsu, Hirohisa; Wada, Katsuhiro; Kanjoh, Terumitsu; Miyashita, Hideaki; Sato, Mayumi; Kawachi, Masanobu; Kobayashi, Masami

2016-12-01

In this review, we introduce our recent studies on divinyl chlorophylls functioning in unique marine picoplankton Prochlorococcus sp. (1) Essential physicochemical properties of divinyl chlorophylls are compared with those of monovinyl chlorophylls; separation by normal-phase and reversed-phase high-performance liquid chromatography with isocratic eluent mode, absorption spectra in four organic solvents, fluorescence information (emission spectra, quantum yields, and life time), circular dichroism spectra, mass spectra, nuclear magnetic resonance spectra, and redox potentials. The presence of a mass difference of 278 in the mass spectra between [M+H] + and the ions indicates the presence of a phytyl tail in all the chlorophylls. (2) Precise high-performance liquid chromatography analyses show divinyl chlorophyll a' and divinyl pheophytin a as the minor key components in four kinds of Prochlorococcus sp.; neither monovinyl chlorophyll a' nor monovinyl pheophytin a is detected, suggesting that the special pair in photosystem I and the primary electron acceptor in photosystem II are not monovinyl but divinyl-type chlorophylls. (3) Only Prochlorococcus sp. NIES-2086 possesses both monovinyl chlorophyll b and divinyl chlorophyll b, while any other monovinyl-type chlorophylls are absent in this strain. Monovinyl chlorophyll b is not detected at all in the other three strains. Prochlorococcus sp. NIES-2086 is the first example that has both monovinyl chlorophyll b as well as divinyl chlorophylls a/b as major chlorophylls.

Identification of Genes Associated with Chlorophyll Accumulation in Flower Petals

PubMed Central

Ohmiya, Akemi; Hirashima, Masumi; Yagi, Masafumi; Tanase, Koji; Yamamizo, Chihiro

2014-01-01

Plants have an ability to prevent chlorophyll accumulation, which would mask the bright flower color, in their petals. In contrast, leaves contain substantial amounts of chlorophyll, as it is essential for photosynthesis. The mechanisms of organ-specific chlorophyll accumulation are unknown. To identify factors that determine the chlorophyll content in petals, we compared the expression of genes related to chlorophyll metabolism in different stages of non-green (red and white) petals (very low chlorophyll content), pale-green petals (low chlorophyll content), and leaves (high chlorophyll content) of carnation (Dianthus caryophyllus L.). The expression of many genes encoding chlorophyll biosynthesis enzymes, in particular Mg-chelatase, was lower in non-green petals than in leaves. Non-green petals also showed higher expression of genes involved in chlorophyll degradation, including STAY-GREEN gene and pheophytinase. These data suggest that the absence of chlorophylls in carnation petals may be caused by the low rate of chlorophyll biosynthesis and high rate of degradation. Similar results were obtained by the analysis of Arabidopsis microarray data. In carnation, most genes related to chlorophyll biosynthesis were expressed at similar levels in pale-green petals and leaves, whereas the expression of chlorophyll catabolic genes was higher in pale-green petals than in leaves. Therefore, we hypothesize that the difference in chlorophyll content between non-green and pale-green petals is due to different levels of chlorophyll biosynthesis. Our study provides a basis for future molecular and genetic studies on organ-specific chlorophyll accumulation. PMID:25470367

Chlorophyll f and chlorophyll d are produced in the cyanobacterium Chlorogloeopsis fritschii when cultured under natural light and near-infrared radiation.

PubMed

Airs, R L; Temperton, B; Sambles, C; Farnham, G; Skill, S C; Llewellyn, C A

2014-10-16

We report production of chlorophyll f and chlorophyll d in the cyanobacterium Chlorogloeopsis fritschii cultured under near-infrared and natural light conditions. C. fritschii produced chlorophyll f and chlorophyll d when cultured under natural light to a high culture density in a 20 L bubble column photobioreactor. In the laboratory, the ratio of chlorophyll f to chlorophyll a changed from 1:15 under near-infrared, to an undetectable level of chlorophyll f under artificial white light. The results provide support that chlorophylls f and d are both red-light inducible chlorophylls in C. fritschii. Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Beneath the surface: Characteristics of oceanic ecosystems under weak mixing conditions A theoretical investigation

NASA Astrophysics Data System (ADS)

Beckmann, Aike; Hense, Inga

2007-12-01

This study considers an important biome in aquatic environments, the subsurface ecosystem that evolves under low mixing conditions, from a theoretical point of view. Employing a conceptual model that involves phytoplankton, a limiting nutrient and sinking detritus, we use a set of key characteristics (thickness, depth, biomass amplitude/productivity) to qualitatively and quantitatively describe subsurface biomass maximum layers (SBMLs) of phytoplankton. These SBMLs are defined by the existence of two community compensation depths in the water column, which confine the layer of net community production; their depth coincides with the upper nutricline. Analysing the results of a large ensemble of simulations with a one-dimensional numerical model, we explore the parameter dependencies to obtain fundamental steady-state relationships that connect primary production, mortality and grazing, remineralization, vertical diffusion and detrital sinking. As a main result, we find that we can distinguish between factors that determine the vertically integrated primary production and others that affect only depth and shape (thickness and biomass amplitude) of this subsurface production layer. A simple relationship is derived analytically, which can be used to estimate the steady-state primary productivity in the subsurface oligotrophic ocean. The fundamental nature of the results provides further insight into the dynamics of these “hidden” ecosystems and their role in marine nutrient cycling.

Three color laser fluorometer for studies of phytoplankton fluorescence

NASA Technical Reports Server (NTRS)

Phinney, David A.; Yentsch, C. S.; Rohrer, J.

1988-01-01

A three-color laser fluorometer has been developed for field work operations. Using two tunable dye lasers (excitation wavelengths at 440 nm and 530 nm), broadband wavelength optical filters were selected to obtain maximum fluorescence sensitivity at wavelengths greater than 675 nm (chlorophyll) and 575 + or - 15 nm (phycoerythrin). The laser fluorometer permits the measurement of phytoplankton pigments under static or flowing conditions and more closely resembles the time scales (ns) and energy levels (mW) of other laser-induced fluorescence instruments.

Selective enhancement of scopadulcic acid B production in the cultured tissues of Scoparia dulcis by methyl jasmonate.

PubMed

Nkembo, Kasidimoko Marguerite; Lee, Jung-Bum; Hayashi, Toshimitsu

2005-07-01

The effects of methyl jasmonate (MeJA) on isoprenoid production were evaluated in cultured tissues of Scoparia dulcis. It was found that MeJA suppressed the accumulation of chlorophylls, carotenoids, phytol and beta-sitosterol in the tissues. MeJA, however, remarkably enhanced the production of scopadulcic acid B (SDB), with 10 microM being optimal observed concentration for stimulation of SDB production. The maximum concentration of SDB was observed 6 d after MeJA treatment.

[Chlorophyll synthesis in cotyledons after gamma ray irradiation of black pine seeds].

PubMed

Bogdanović, M; Jelić, G

1992-01-01

The radiosensitivity of the greening system of Pinus nigra Arn. cotyledons has been studied in this paper. An exponential relation exists between the effect and dose for chlorophyll synthesis in the dark. Chlorophyll synthesis in the light roughly parallels that of chlorophyll synthesis in the dark. The restoration of chlorophyll was observed both in the light and in the dark. A stimulative effect of low doses of gamma radiation on chlorophyll synthesis was noticed. The radiosensitivity of chlorophyll a and chlorophyll b synthesis varied with the experimental conditions, suggesting that chlorophyll b synthesis might occur independently of chlorophyll a synthesis.

Investigation of different coastal processes in Indonesian waters using SeaWiFS data

NASA Astrophysics Data System (ADS)

Hendiarti, Nani; Siegel, Herbert; Ohde, Thomas

2004-01-01

SeaWiFS data were applied to investigate coastal processes in Indonesian waters around the most populated island of Java. Coastal processes due to wind forcing were studied the first time using SeaWiFS-derived chlorophyll and TSM concentrations in combination with AVHRR-derived SST in the period from September 1997 to December 2001. Upwelling events were studied along the southern coast of Java during the southeast monsoon (June to September). Satellite-derived chlorophyll concentrations higher than 0.8 mg/ m3 and sea-surface temperatures lower than 28°C are indications of upwelling. Upwelling events influence the distribution and growth of phytoplankton and provide by that good feeding condition for zooplankton, larvae, juvenile and adult of pelagic fish. Coastal discharge into the western Java Sea contains organic and inorganic materials originating from different sources. Diffuse impacts, particularly from fish farms and aquaculture, as well as coastal erosion influence large coastal areas during the rainy season (December to March), and to a lesser extent during the dry season. Strong Citarum river discharge was observed during the transition phase from the rainy to the dry season (March and April), when the maximum amount of transported material reaches the sea. The river plume is evident from chlorophyll concentrations higher than 2.5 mg/ m3, and suspended particulate matter concentrations of more than 8 mg/dm3. The Sunda Strait is seasonally influenced by water transport from the Java Sea and from the Indian Ocean. The satellite data show that water transport from the Java Sea occurs during the pre-dominantly easterly winds period (June to September). This is characterized by warm water (SST higher than 29.5°C) and chlorophyll concentrations higher than 0.5 mg/ m3. This water transport influences the fish abundance in the Sunda Strait. High fish catches coincide with the presence of Java Sea water, while the surface currents lead to the migration of pelagic fish. Conversely, during the dominant westerly winds period, oceanic waters from the Indian Ocean with low chlorophyll concentrations influence the Sunda Strait water.

Leaf Chlorophyll Content as a Proxy for Photosynthetic Parameters for Estimating Carbon and Water Fluxes at a Forest Site

NASA Astrophysics Data System (ADS)

Luo, X.; Croft, H.; Chen, J.; Bartlett, P. A.; Staebler, R. M.; Froelich, N.

2016-12-01

Chlorophyll is the main light-harvesting pigment in leaves to support photosynthesis and also reflects the seasonal variations in the supply of nitrogen for photosynthetic enzymes. In this study, we explore the feasibility of using leaf chlorophyll content (Chlleaf) as a proxy for the leaf maximum carbonxylation rate at 25 °C ( ) for the purpose of improving carbon and water cycle estimation. Measurements of Chlleaf and were made in a decidous forest stand near Borden in Northern Ontario, Canada, which was equiped with eddy covariance instruments for measuring carbon and water fluxes. Based on the measurements from four broadleaf deciduous species, a linear relationship is develoepd between Chlleaf and . Compared to the prescribed constant values, derived from Chlleaf shows pronounced seasonal variations and improves the simulations of GPP and ET by 5% and 3%, respectively. The most significant improvements are found in spring and fall, when the errors in modelled GPP are reduced from 4.71 to 0.69 g/m2/day and from 2.4 to 1.16 g/m2/day, respecively. Errors in ET estimation are correspondingly reduced from 0.85 to 0.61 mm/day and from 0.40 to 0.33 mm/day in spring and autumn, respectively. A two-leaf upscaling scheme was used to account for the uneven distribution of incoming solar irradiance inside canopies and the accompanied physiological differences between leaves. One μg/cm2 of Chlleaf corresponds to 1.3 and 0.77 μmol/m2/s of in sunlit leaves and shaded leaves, respectively. The seasonal average rate of photosynthesis, transpiration, water use efficiency and light use efficiency of sunlit leaves are 2.7, 15, 0.19 and 0.3 times those of shaded leaves. For the first time, this sutdy incorporates chlorophyll in terrestrial biosphere models at a forest stand. Since it is feasible to derive leaf chlorophyll information using remote sensing means, this study would have profound implications on large-scale carbon and water fluxes estimation.

Chlorophyll a is a favorable substrate for Chlamydomonas Mg-dechelatase encoded by STAY-GREEN.

PubMed

Matsuda, Kaori; Shimoda, Yousuke; Tanaka, Ayumi; Ito, Hisashi

2016-12-01

Mg removal from chlorophyll by Mg-dechelatase is the first step of chlorophyll degradation. Recent studies showed that in Arabidopsis, Stay Green (SGR) encodes Mg-dechelatase. Though the Escherichia coli expression system is advantageous for investigating the properties of Mg-dechelatase, Arabidopsis Mg-dechelatase is not successfully expressed in E. coli. Chlamydomonas reinhardtii SGR (CrSGR) has a long, hydrophilic tail, suggesting that active CrSGR can be expressed in E. coli. After the incubation of chlorophyll a with CrSGR expressed in E. coli, pheophytin a accumulated, indicating that active CrSGR was expressed in E. coli. Substrate specificity of CrSGR against chlorophyll b and an intermediate molecule of the chlorophyll b degradation pathway was examined. CrSGR exhibited no activity against chlorophyll b and low activity against 7-hydroxymethyl chlorophyll a, consistent with the fact that chlorophyll b is degraded only after conversion to chlorophyll a. CrSGR exhibited low activity against divinyl chlorophyll a and chlorophyll a', and no activity against chlorophyllide a, protochlorophyll a, chlorophyll c 2 , and Zn-chlorophyll a. These observations indicate that chlorophyll a is the most favorable substrate for CrSGR. When CrSGR was expressed in Arabidopsis cells, the chlorophyll content decreased, further confirming that SGR has Mg-dechelating activity in chloroplasts. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Seasonal and interannual variability in the taxonomic composition and production dynamics of phytoplankton assemblages in Crater Lake, Oregon

USGS Publications Warehouse

C. David, McIntire; Larson, Gary L.; Truitt, Robert E.

2007-01-01

Taxonomic composition and production dynamics of phytoplankton assemblages in Crater Lake, Oregon, were examined during time periods between 1984 and 2000. The objectives of the study were (1) to investigate spatial and temporal patterns in species composition, chlorophyll concentration, and primary productivity relative to seasonal patterns of water circulation; (2) to explore relationships between water column chemistry and the taxonomic composition of the phytoplankton; and (3) to determine effects of primary and secondary consumers on the phytoplankton assemblage. An analysis of 690 samples obtained on 50 sampling dates from 14 depths in the water column found a total of 163 phytoplankton taxa, 134 of which were identified to genus and 101 were identified to the species or variety level of classification. Dominant species by density or biovolume included Nitzschia gracilis, Stephanodiscus hantzschii, Ankistrodesmus spiralis, Mougeotia parvula, Dinobryon sertularia, Tribonema affine, Aphanocapsa delicatissima, Synechocystis sp., Gymnodinium inversum, and Peridinium inconspicuum. When the lake was thermally stratified in late summer, some of these species exhibited a stratified vertical distribution in the water column. A cluster analysis of these data also revealed a vertical stratification of the flora from the middle of the summer through the early fall. Multivariate test statistics indicated that there was a significant relationship between the species composition of the phytoplankton and a corresponding set of chemical variables measured for samples from the water column. In this case, concentrations of total phosphorus, ammonia, total Kjeldahl nitrogen, and alkalinity were associated with interannual changes in the flora; whereas pH and concentrations of dissolved oxygen, orthophosphate, nitrate, and silicon were more closely related to spatial variation and thermal stratification. The maximum chlorophyll concentration when the lake was thermally stratified in August and September was usually between depths of 100 m and 120 m. In comparison, the depth of maximum primary production ranged from 60 m to 80 m at this time of year. Regression analysis detected a weak negative relationship between chlorophyll concentration and Secchi disk depth, a measure of lake transparency. However, interannual changes in chlorophyll concentration and the species composition of the phytoplankton could not be explained by the removal of the septic field near Rim Village or by patterns of upwelling from the deep lake. An alternative trophic hypothesis proposes that the productivity of Crater Lake is controlled primarily by long-term patterns of climatic change that regulate the supply of allochthonous nutrients.

The potential of high-frequency profiling to assess vertical and seasonal patterns of phytoplankton dynamics in lakes: An extension of the Plankton Ecology Group (PEG) model

USGS Publications Warehouse

Brentrup, Jennifer A.; Williamson, Craig E.; Colom-Montero, William; Eckert, Werner; de Eyto, Elvira; Grossart, Hans-Peter; Huot, Yannick; Isles, Peter D. F.; Knoll, Lesley B.; Leach, Taylor H.; McBride, Christopher G.; Pierson, Don; Pomati, Francesco; Read, Jordan S.; Rose, Kevin C.; Samal, Nihar R.; Staehr, Peter A.; Winslow, Luke A.

2016-01-01

The use of high-frequency sensors on profiling buoys to investigate physical, chemical, and biological processes in lakes is increasing rapidly. Profiling buoys with automated winches and sensors that collect high-frequency chlorophyll fluorescence (ChlF) profiles in 11 lakes in the Global Lake Ecological Observatory Network (GLEON) allowed the study of the vertical and temporal distribution of ChlF, including the formation of subsurface chlorophyll maxima (SSCM). The effectiveness of 3 methods for sampling phytoplankton distributions in lakes, including (1) manual profiles, (2) single-depth buoys, and (3) profiling buoys were assessed. High-frequency ChlF surface data and profiles were compared to predictions from the Plankton Ecology Group (PEG) model. The depth-integrated ChlF dynamics measured by the profiling buoy data revealed a greater complexity that neither conventional sampling nor the generalized PEG model captured. Conventional sampling techniques would have missed SSCM in 7 of 11 study lakes. Although surface-only ChlF data underestimated average water column ChlF, at times by nearly 2-fold in 4 of the lakes, overall there was a remarkable similarity between surface and mean water column data. Contrary to the PEG model’s proposed negligible role for physical control of phytoplankton during the growing season, thermal structure and light availability were closely associated with ChlF seasonal depth distribution. Thus, an extension of the PEG model is proposed, with a new conceptual framework that explicitly includes physical metrics to better predict SSCM formation in lakes and highlight when profiling buoys are especially informative.

Relationship between chlorophyll density and SPAD chlorophyll meter reading for Jerusalem artichoke (Helianthus tuberosus L.)

USDA-ARS?s Scientific Manuscript database

Chlorophyll is an indicator of crop health and productivity. Measuring chlorophyll is usually done directly and requires significant time and resources. Indirect measurement of chlorophyll density using a handheld portable chlorophyll meter can reduce time. However, this information is very limit...

Inherent limitations of nondestructive chlorophyll meters: a comparison of two types of meters

NASA Technical Reports Server (NTRS)

Monje, O. A.; Bugbee, B.

1992-01-01

Two types of nondestructive chlorophyll meters were compared with a standard, destructive chlorophyll measurement technique. The nondestructive chlorophyll meters were 1) a custom built, single-wavelength meter, and 2) the recently introduced, dual-wavelengh, chlorophyll meter from Minolta (model SPAD-502). Data from both meters were closely correlated with destructive measurements of chlorophyll (r2 = 0.90 and 0.93; respectively) for leaves with chlorophyll concentrations ranging from 100 to 600 mg m-2, but both meters consistently overestimated chlorophyll outside this range. Although the dual-wavelength meter was slightly more accurate than the single-wavelength meter (higher r2), the light-scattering properties of leaf cells and the nonhomogeneous distribution of chlorophyll in leaves appear to limit the ability of all meters to estimate in vivo chlorophyll concentration.

Mercury distribution in ancient and modern sediment of northeastern Bering Sea

USGS Publications Warehouse

Nelson, C.H.; Pierce, D.E.; Leong, K.W.; Wang, F.F.H.

1975-01-01

Reconnaissance sampling of surface and subsurface sediment to a maximum depth of 80 m below the sea floor shows that typical values of 0.03 p.p.m. and anomalies of 0.2-1.3 p.p.m. mercury have been present in northeastern Bering Sea since Early Pliocene time. Values are highest in modern beach (maximum 1.3 and mean 0.22 p.p.m. Hg) and nearshore subsurface gravels (maximum 0.6 and mean 0.06 p.p.m. Hg) along the highly mineralized Seward Peninsula and in clayey silt rich in organic matter (maximum 0.16 and mean 0.10 p.p.m. Hg) throughout the region. Although gold mining may be partly responsible for high mercury levels in the modern beach near Nome, Alaska (maximum 0.45 p.p.m.), equally high or greater concentrations of mercury occur in buried Pleistocene sediments immediately offshore (maximum 0.6 p.p.m.) and in modern unpolluted beach sediments at Bluff (maximum 1.3 p.p.m.); this suggests that the contamination effects of mining may be no greater than natural concentration processes in the Seward Peninsula region. The mercury content of offshore surface sediment, even adjacent to mercury-rich beaches, corresponds to that of unpolluted marine and fresh-water sediment elsewhere. The normal values that prevail offshore may be attributable to entrapment of mercury-bearing heavy minerals on beaches near sources and/or dilution effects of offshore sedimentation. The few minor anomalies offshore occur in glacial drift derived from mercury source regions of Chukotka (Siberia) and Seward Peninsula; Pleistocene shoreline processes have reworked the drift to concentrate the heavy metals. The distribution pattern of mercury indicates that particulate mercury-bearing minerals have not been widely dispersed from onland deposits in quantities sufficient to increase mercury levels above normal in offshore sediments of Bering Sea; however, it shows that natural sedimentary processes can concentrate this mercury in beaches of the coastal zone where there already is concern because of potential pollution from man's activities.

Characterization of chlorophyll binding to LIL3.

PubMed

Mork-Jansson, Astrid Elisabeth; Eichacker, Lutz Andreas

2018-01-01

The light harvesting like protein 3 (LIL 3) from higher plants, has been linked to functions in chlorophyll and tocopherol biosynthesis, photo-protection and chlorophyll transfer. However, the binding of chlorophyll to LIL3 is unclear. We present a reconstitution protocol for chlorophyll binding to LIL3 in DDM micelles. It is shown in the absence of lipids and carotenoids that reconstitution of chlorophyll binding to in vitro expressed LIL3 requires pre-incubation of reaction partners at room temperature. We show chlorophyll a but not chlorophyll b binding to LIL3 at a molar ratio of 1:1. Neither dynamic light scattering nor native PAGE, enabled a discrimination between binding of chlorophyll a and/or b to LIL3.

Integrating aeromagnetic and Landsat™ 8 data into subsurface structural mapping of Precambrian basement complex

NASA Astrophysics Data System (ADS)

Kayode, John Stephen; Nawawi, M. N. M.; Abdullah, Khiruddin B.; Khalil, Amin E.

2017-01-01

The integration of Aeromagnetic data and remotely sensed imagery with the intents of mapping the subsurface geological structures in part of the South-western basement complex of Nigeria was developed using the PCI Geomatica Software. 2013. The data obtained from the Nigerian Geological Survey Agency; was corrected using Regional Residual Separation of the Total Magnetic field anomalies enhanced, and International Geomagnetic Reference Field removed. The principal objective of this study is, therefore, to introduce a rapid and efficient method of subsurface structural depth estimate and structural index evaluation through the incorporation of the Euler Deconvolution technique into PCI Geomatica 2013 to prospect for subsurface geological structures. The shape and depth of burial helped to define these structures from the regional aeromagnetic map. The method enabled various structural indices to be automatically delineated for an index of between 0.5 SI and 3.0 SI at a maximum depth of 1.1 km that clearly showed the best depths estimate for all the structural indices. The results delineate two major magnetic belts in the area; the first belt shows an elongated ridge-like structure trending mostly along the NorthNortheast-SouthSouthwest and the other anomalies trends primarily in the Northeast, Northwest, Northeast-Southwest parts of the study area that could be attributed to basement complex granitic intrusions from the tectonic history of the area. The majority of the second structures showed various linear structures different from the first structure. Basically, a significant offset was delineated at the core segment of the study area, suggesting a major subsurface geological feature that controls mineralisation in this area.

Aerial Vehicles to Detect Maximum Volume of Plume Material Associated with Habitable Areas in Extreme Environments

NASA Technical Reports Server (NTRS)

Gunasekara, Onalli; Wong, Uland Y.; Furlong, Michael P.; Dille, Michael

2017-01-01

Current technologies of exploring habitable areas of icy moons are limited to flybys of space probes. This research project addresses long-term navigation of icy moons by developing a MATLAB adjustable trajectory based on the volume of plume material observed. Plumes expose materials from the sub-surface without accessing the subsurface. Aerial vehicles capable of scouting vapor plumes and detecting maximum plume material volumes, which are considered potentially habitable in inhospitable environments, would enable future deep-space missions to search for extraterrestrial organisms on the surface of icy moons. Although this platform is still a prototype, it demonstrates the potential aerial vehicles can have in improving the capabilities of long-term space navigation and enabling technology for detecting life in extreme environments. Additionally, this work is developing the capabilities that could be utilized as a platform for space biology research. For example, aerial vehicles that are sent to map extreme environments of icy moons or the planet Mars, could also carry small payloads with automated cell-biology experiments, designed to probe the biological response of low-gravity and high-radiation planetary environments, serving as a pathfinder for future human missions.

Mercury distribution in ancient and modern sediments of northeastern Bering Sea

USGS Publications Warehouse

Nelson, C. Hans; Pierce, D.E.; Leong, K.W.; Wang, F.F.

1972-01-01

A reconnaissance of surface and subsurface sediments to a maximum depth of 244 feet below the sea floor shows that natural mercury anomalies from 0.2 to 1.3 ppm have been present in northeastern Bering Sea since early Pliocene. The anomalies and mean values are highest in modern beach (maximum 1.3 and mean 0.22 ppm Hg) and nearshore subsurface gravels (maximum 0.6 and mean .06 ppm Hg) along the highly mineralized Seward Peninsula and in organic rich silt (maximum 0.16 and mean 0.10 ppm Hg) throughout the region; the mean values are lowest in offshore sands (0.03 ppm Hg) . Although gold mining may be partially responsible for high mercury levels in the beaches near Nome, Alaska, equally high or greater concentrations of mercury occur in ancient glacial sediments immediately offshore (0.6 ppm) and in modern unpolluted beach sediments at Bluff (0.45 - 1.3 ppm); this indicates that the contamination effects of mining may be no greater than natural concentration processes in the Seward Peninsula region. The background content of mercury (0.03) throughout the central area of northeastern Bering Sea is similar to that elsewhere in the world. The low mean values (0.04 ppm) even immediately offshore from mercury-rich beaches, suggests that in the surface sediments of northeastern Bering Sea, the highest concentrations are limited to the beaches near mercury sources; occasionally, however, low mercury anomalies occur offshore in glacial drift derived from mercury source regions of Chukotka and Seward Peninsula and reworked by Pleistocene shoreline processes. The minimal values offshore may be attributable to beach entrapment of heavy minerals containing mercury and/or dilution effects of modern sedimentation.

Characterization of chlorophyll binding to LIL3

PubMed Central

Mork-Jansson, Astrid Elisabeth

2018-01-01

The light harvesting like protein 3 (LIL 3) from higher plants, has been linked to functions in chlorophyll and tocopherol biosynthesis, photo-protection and chlorophyll transfer. However, the binding of chlorophyll to LIL3 is unclear. We present a reconstitution protocol for chlorophyll binding to LIL3 in DDM micelles. It is shown in the absence of lipids and carotenoids that reconstitution of chlorophyll binding to in vitro expressed LIL3 requires pre-incubation of reaction partners at room temperature. We show chlorophyll a but not chlorophyll b binding to LIL3 at a molar ratio of 1:1. Neither dynamic light scattering nor native PAGE, enabled a discrimination between binding of chlorophyll a and/or b to LIL3. PMID:29390011

Allocation of secondary metabolites, photosynthetic capacity, and antioxidant activity of Kacip Fatimah (Labisia pumila Benth) in response to CO2 and light intensity.

PubMed

Ibrahim, Mohd Hafiz; Jaafar, Hawa Z E; Karimi, Ehsan; Ghasemzadeh, Ali

2014-01-01

A split plot 3 by 4 experiment was designed to investigate and distinguish the relationships among production of secondary metabolites, soluble sugar, phenylalanine ammonia lyase (PAL; EC 4.3.1.5) activity, leaf gas exchange, chlorophyll content, antioxidant activity (DPPH), and lipid peroxidation under three levels of CO2 (400, 800, and 1200 μ mol/mol) and four levels of light intensity (225, 500, 625, and 900 μ mol/m(2)/s) over 15 weeks in Labisia pumila. The production of plant secondary metabolites, sugar, chlorophyll content, antioxidant activity, and malondialdehyde content was influenced by the interactions between CO2 and irradiance. The highest accumulation of secondary metabolites, sugar, maliondialdehyde, and DPPH activity was observed under CO2 at 1200 μ mol/mol + light intensity at 225 μ mol/m(2)/s. Meanwhile, at 400 μ mol/mol CO2 + 900 μ mol/m(2)/s light intensity the production of chlorophyll and maliondialdehyde content was the highest. As CO2 levels increased from 400 to 1200 μ mol/mol the photosynthesis, stomatal conductance, f v /f m (maximum efficiency of photosystem II), and PAL activity were enhanced. The production of secondary metabolites displayed a significant negative relationship with maliondialdehyde indicating lowered oxidative stress under high CO2 and low irradiance improved the production of plant secondary metabolites that simultaneously enhanced the antioxidant activity (DPPH), thus improving the medicinal value of Labisia pumila under this condition.

PsbS is required for systemic acquired acclimation and post-excess-light-stress optimization of chlorophyll fluorescence decay times in Arabidopsis

PubMed Central

Ciszak, Kamil; Kulasek, Milena; Barczak, Anna; Grzelak, Justyna; Maćkowski, Sebastian; Karpiński, Stanisław

2015-01-01

Systemic acquired acclimation (SAA) is an important light acclimatory mechanism that depends on the global adjustments of non-photochemical quenching and chloroplast retrograde signaling. As the exact regulation of these processes is not known, we measured time-resolved fluorescence of chlorophyll a in Arabidopsis thaliana leaves exposed to excess light, in leaves undergoing SAA, and in leaves after excess light episode. We compare the behavior induced in wild-type plants with null mutant of non-photochemical quenching (npq4–1). The wild type rosettes exhibit a small reduction of fluorescence decay times in leaves directly exposed to excess light and in leaves undergoing SAA in ambient low light. However in npq4–1 exposition to excess light results in much faster fluorescence decay, which is insensitive to excitation power. At the same time npq4–1 leaves undergoing SAA displayed intermediate fluorescence decay. The npq4–1 plants also lost the ability to optimize florescence decay, and thus chlorophyll a dynamics up to 2 h after excess light episode. The fluorescence decay dynamics in both WT and npq4–1 can be described by a set of 3 maximum decay times. Based on the results, we concluded that functional PsbS is required for optimization of absorbed photon fate and optimal light acclimatory responses such as SAA or after excess light stress. PMID:25654166

Contrasts between channels and backwaters in a large, floodplain river: Testing our understanding of nutrient cycling, phytoplankton abundance, and suspended solids dynamics

USGS Publications Warehouse

Houser, Jeff N.

2016-01-01

In floodplain rivers, variability in hydraulic connectivity interacts with biogeochemistry to determine the distribution of suspended and dissolved substances. Nutrient, chlorophyll a, and suspended solids data spanning longitudinal (5 study reaches across 1300 river km), lateral (main channel and backwaters), and temporal (1994–2011) gradients in the Upper Mississippi River (UMR) were used to examine the extent to which observed differences between the main channel and backwaters were consistent with expectations based on current understanding of biogeochemical processes in large rivers. For N and P, the results largely conformed to expectations. N concentrations were greater in the main channel than in the backwaters in 82 to 96% of the observations across river reaches. Maximum TP concentrations generally occurred in backwaters during summer, when backwater TP often exceeded that of the main channel. Flux of P from sediments may be a substantial source of water-column P in UMR backwaters in summer. The data for suspended solids and chlorophyll a suggest that some refinements are needed of our understanding of ecosystem processes in large rivers. During low-discharge conditions, concentrations of inorganic suspended solids often were greater in backwaters than in the main channel, suggesting the importance of sediment resuspension. Chlorophyll a concentrations were usually greater in backwaters than in the main channel, but exceptions indicate that phytoplankton abundance in the main channel of the UMR can sometimes be greater than is typically expected for large rivers.

Dehalogenation Activities and Distribution of Reductive Dehalogenase Homologous Genes in Marine Subsurface Sediments▿ †

PubMed Central

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H.; Inagaki, Fumio

2009-01-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem. PMID:19749069

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

PubMed

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H; Inagaki, Fumio

2009-11-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem.

The Growth Response of Two Diatom Species to Atmospheric Dust from the Last Glacial Maximum.

PubMed

Conway, Tim M; Hoffmann, Linn J; Breitbarth, Eike; Strzepek, Robert F; Wolff, Eric W

2016-01-01

Relief of iron (Fe) limitation in the surface Southern Ocean has been suggested as one driver of the regular glacial-interglacial cycles in atmospheric carbon dioxide (CO2). The proposed cause is enhanced deposition of Fe-bearing atmospheric dust to the oceans during glacial intervals, with consequent effects on export production and the carbon cycle. However, understanding the role of enhanced atmospheric Fe supply in biogeochemical cycles is limited by knowledge of the fluxes and 'bioavailability' of atmospheric Fe during glacial intervals. Here, we assess the effect of Fe fertilization by dust, dry-extracted from the Last Glacial Maximum portion of the EPICA Dome C Antarctic ice core, on the Antarctic diatom species Eucampia antarctica and Proboscia inermis. Both species showed strong but differing reactions to dust addition. E. antarctica increased cell number (3880 vs. 786 cells mL-1), chlorophyll a (51 vs. 3.9 μg mL-1) and particulate organic carbon (POC; 1.68 vs. 0.28 μg mL-1) production in response to dust compared to controls. P. inermis did not increase cell number in response to dust, but chlorophyll a and POC per cell both strongly increased compared to controls (39 vs. 15 and 2.13 vs. 0.95 ng cell-1 respectively). The net result of both responses was a greater production of POC and chlorophyll a, as well as decreased Si:C and Si:N incorporation ratios within cells. However, E, antarctica decreased silicate uptake for the same nitrate and carbon uptake, while P. inermis increased carbon and nitrate uptake for the same silicate uptake. This suggests that nutrient utilization changes in response to Fe addition could be driven by different underlying mechanisms between different diatom species. Enhanced supply of atmospheric dust to the surface ocean during glacial intervals could therefore have driven nutrient-utilization changes which could permit greater carbon fixation for lower silica utilization. Additionally, both species responded more strongly to lower amounts of direct Fe chloride addition than they did to dust, suggesting that not all the Fe released from dust was in a bioavailable form available for uptake by diatoms.

The Growth Response of Two Diatom Species to Atmospheric Dust from the Last Glacial Maximum

PubMed Central

Hoffmann, Linn J.; Breitbarth, Eike; Strzepek, Robert F.; Wolff, Eric W.

2016-01-01

Relief of iron (Fe) limitation in the surface Southern Ocean has been suggested as one driver of the regular glacial-interglacial cycles in atmospheric carbon dioxide (CO2). The proposed cause is enhanced deposition of Fe-bearing atmospheric dust to the oceans during glacial intervals, with consequent effects on export production and the carbon cycle. However, understanding the role of enhanced atmospheric Fe supply in biogeochemical cycles is limited by knowledge of the fluxes and ‘bioavailability’ of atmospheric Fe during glacial intervals. Here, we assess the effect of Fe fertilization by dust, dry-extracted from the Last Glacial Maximum portion of the EPICA Dome C Antarctic ice core, on the Antarctic diatom species Eucampia antarctica and Proboscia inermis. Both species showed strong but differing reactions to dust addition. E. antarctica increased cell number (3880 vs. 786 cells mL-1), chlorophyll a (51 vs. 3.9 μg mL-1) and particulate organic carbon (POC; 1.68 vs. 0.28 μg mL-1) production in response to dust compared to controls. P. inermis did not increase cell number in response to dust, but chlorophyll a and POC per cell both strongly increased compared to controls (39 vs. 15 and 2.13 vs. 0.95 ng cell-1 respectively). The net result of both responses was a greater production of POC and chlorophyll a, as well as decreased Si:C and Si:N incorporation ratios within cells. However, E, antarctica decreased silicate uptake for the same nitrate and carbon uptake, while P. inermis increased carbon and nitrate uptake for the same silicate uptake. This suggests that nutrient utilization changes in response to Fe addition could be driven by different underlying mechanisms between different diatom species. Enhanced supply of atmospheric dust to the surface ocean during glacial intervals could therefore have driven nutrient-utilization changes which could permit greater carbon fixation for lower silica utilization. Additionally, both species responded more strongly to lower amounts of direct Fe chloride addition than they did to dust, suggesting that not all the Fe released from dust was in a bioavailable form available for uptake by diatoms. PMID:27384948

Predicting the spatiotemporal distributions of marine fish species utilizing earth system data in a maximum entropy modeling framework

NASA Astrophysics Data System (ADS)

Wang, L.; Kerr, L. A.; Bridger, E.

2016-12-01

Changes in species distributions have been widely associated with climate change. Understanding how ocean conditions influence marine fish distributions is critical for elucidating the role of climate in ecosystem change and forecasting how fish may be distributed in the future. Species distribution models (SDMs) can enable estimation of the likelihood of encountering species in space or time as a function of environmental conditions. Traditional SDMs are applied to scientific-survey data that include both presences and absences. Maximum entropy (MaxEnt) models are promising tools as they can be applied to presence-only data, such as those collected from fisheries or citizen science programs. We used MaxEnt to relate the occurrence records of marine fish species (e.g. Atlantic herring, Atlantic mackerel, and butterfish) from NOAA Northeast Fisheries Observer Program to environmental conditions. Environmental variables from earth system data, such as sea surface temperature (SST), sea bottom temperature (SBT), Chlorophyll-a, bathymetry, North Atlantic oscillation (NAO), and Atlantic multidecadal oscillation (AMO), were matched with species occurrence for MaxEnt modeling the fish distributions in Northeast Shelf area. We developed habitat suitability maps for these species, and assessed the relative influence of environmental factors on their distributions. Overall, SST and Chlorophyll-a had greatest influence on their monthly distributions, with bathymetry and SBT having moderate influence and climate indices (NAO and AMO) having little influence. Across months, Atlantic herring distribution was most related to SST 10th percentile, and Atlantic mackerel and butterfish distributions were most related to previous month SST. The fish distributions were most affected by previous month Chlorophyll-a in summer months, which may indirectly indicate the accumulative impact of primary productivity. Results highlighted the importance of spatial and temporal scales when using SDMs to investigate the habitat suitability and distributions of a focal species. MaxEnt models have the potential to provide hindcasts of where species might have been in the past in relation to historical environmental conditions, nowcasts in relation to current conditions, or forecasts of future species distributions.

Fe(III) reduction and U(VI) immobilization by Paenibacillus sp. strain 300A, isolated from Hanford 300A subsurface sediments.

PubMed

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K; Beyenal, Haluk

2012-11-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

PubMed Central

Ahmed, Bulbul; Cao, Bin; McLean, Jeffrey S.; Ica, Tuba; Dohnalkova, Alice; Istanbullu, Ozlem; Paksoy, Akin; Fredrickson, Jim K.

2012-01-01

A facultative iron-reducing [Fe(III)-reducing] Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes [Fe(III)-nitrilotriacetic acid and Fe(III)-citrate] but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 μM) of either of the electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 μM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We also found that Paenibacillus sp. 300A could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ∼7:3 in PIPES [piperazine-N,N′-bis(2-ethanesulfonic acid)] and ∼1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments. PMID:22961903

Fe(III) Reduction and U(VI) Immobilization by Paenibacillus sp. Strain 300A, Isolated from Hanford 300A Subsurface Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ahmed, B.; Cao, B.; McLean, Jeffrey S.

2012-11-07

A facultative iron-reducing (Fe(III)-reducing) Paenibacillus sp. strain was isolated from Hanford 300A subsurface sediment biofilms that was capable of reducing soluble Fe(III) complexes (Fe(III)-NTA and Fe(III)-citrate) but unable to reduce poorly crystalline ferrihydrite (Fh). However, Paenibacillus sp. 300A was capable of reducing Fh in the presence of low concentrations (2 µM) of either of electron transfer mediators (ETMs) flavin mononucleotide (FMN) or anthraquinone-2,6-disulfonate (AQDS). Maximum initial Fh reduction rates were observed at catalytic concentrations (<10 µM) of either FMN or AQDS. Higher FMN concentrations inhibited Fh reduction, while increased AQDS concentrations did not. We found that Paenibacillus sp. 300A alsomore » could reduce Fh in the presence of natural ETMs from Hanford 300A subsurface sediments. In the absence of ETMs, Paenibacillus sp. 300A was capable of immobilizing U(VI) through both reduction and adsorption. The relative contributions of adsorption and microbial reduction to U(VI) removal from the aqueous phase were ~7:3 in PIPES and ~1:4 in bicarbonate buffer. Our study demonstrated that Paenibacillus sp. 300A catalyzes Fe(III) reduction and U(VI) immobilization and that these reactions benefit from externally added or naturally existing ETMs in 300A subsurface sediments.« less

Enhanced truncated-correlation photothermal coherence tomography with application to deep subsurface defect imaging and 3-dimensional reconstructions

NASA Astrophysics Data System (ADS)

Tavakolian, Pantea; Sivagurunathan, Koneswaran; Mandelis, Andreas

2017-07-01

Photothermal diffusion-wave imaging is a promising technique for non-destructive evaluation and medical applications. Several diffusion-wave techniques have been developed to produce depth-resolved planar images of solids and to overcome imaging depth and image blurring limitations imposed by the physics of parabolic diffusion waves. Truncated-Correlation Photothermal Coherence Tomography (TC-PCT) is the most successful class of these methodologies to-date providing 3-D subsurface visualization with maximum depth penetration and high axial and lateral resolution. To extend the depth range and axial and lateral resolution, an in-depth analysis of TC-PCT, a novel imaging system with improved instrumentation, and an optimized reconstruction algorithm over the original TC-PCT technique is developed. Thermal waves produced by a laser chirped pulsed heat source in a finite thickness solid and the image reconstruction algorithm are investigated from the theoretical point of view. 3-D visualization of subsurface defects utilizing the new TC-PCT system is reported. The results demonstrate that this method is able to detect subsurface defects at the depth range of ˜4 mm in a steel sample, which exhibits dynamic range improvement by a factor of 2.6 compared to the original TC-PCT. This depth does not represent the upper limit of the enhanced TC-PCT. Lateral resolution in the steel sample was measured to be ˜31 μm.

Effect of light quality on the C-phycoerythrin production in marine cyanobacteria Pseudanabaena sp. isolated from Gujarat coast, India.

PubMed

Mishra, Sanjiv K; Shrivastav, Anupama; Maurya, Rahulkumar R; Patidar, Shailesh K; Haldar, Soumya; Mishra, Sandhya

2012-01-01

The isolated cyanobacterium containing biopigments like chlorophyll-a, phycoerythrin, phycocyanin, and carotenoid was cultured under different quality of light modes to ascertain biomass and pigment productivity. On the basis of 16S rRNA gene sequence, the isolate was identified as Pseudanabaena sp. Maximum biomass concentration obtained in white-, blue-, and green-light was 0.82, 0.94, and 0.89 g/L, respectively. It was observed that maximum phycoerythrin production was in green light (39.2 mg/L), ensued by blue light (32.2 mg/L), while phycocyanin production was maximum in red light (10.9 mg/L). In yellow light, pigment production as well as the growth rate gradually declined after 12 days. Carotenoid production decreased in blue-, white-, and red-light after 15 days, while in green light it had increased gradually. The present communication suggests that Pseudanabaena sp. can be used for commercial production of phycoerythrin when grown under green light. Copyright © 2011 Elsevier Inc. All rights reserved.

Algal culture studies related to a closed ecological life support system

NASA Technical Reports Server (NTRS)

Radmer, R.; Behrens, P.; Fernandez, E.; Ollinger, O.; Howell, C.

1984-01-01

Studies on the steady-state long-term (4 month) culture of Scenedesmus obliquus algae, maintained in an annular air-lift column operated as a turbidostat, were carried out to evaluate the life-supporting possibilities of this system. Chlorophyll production and cell number as functions of the dry weight were linear at constant illumination. Productivity (measured as the product of dry weight, mg/ml, and the growth rate, ml/hr) vs. dry weight rose linearly until the cell density reached a level at which light became limiting (89 percent absorption of the photosynthetically active radiation). In the initial, linear portion of the curve, the productivity was limited by cell growth at the given light intensity. The maximum dilution rate of the system corresponded to the doubling time of 13.4 hr, about half the maximum rate, with a productivity of 80 percent of the maximum theoretical productivity. The high light utilization efficiencies were contributed by the low (10 percent of full sunlight) incident intensities.

Adaptation of a canopy reflectance model for sub-aqueous vegetation: Definition and sensitivity analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Plummer, S.E.; Malthus, T.J.; Clark, C.D.

1997-06-01

Seagrass meadows are a key component of shallow coastal environments acting as a food resource, nursery and contributing to water oxygenation. Given the importance of these meadows and their susceptibility to anthropogenic disturbance, it is vital that the extent and growth of seagrass is monitored. Remote sensing techniques offer the potential to determine biophysical characteristics of seagrass. This paper presents observations on the development and testing of an invertible model of seagrass canopy reflectance. The model is an adaptation of a land surface reflectance model to incorporate the effects of attenuation and scattering of incoming radiative flux in water. Sensitivitymore » analysis reveals that the subsurface reflectance is strongly dependent on the water depth, vegetation amount, the parameter which we wish to determine, and turbidity respectively. By contrast the chlorophyll concentration of water and gelbstoff are relatively unimportant. Water depth and turbidity need to be known or accommodated in any inversion as free parameters.« less

Characterising meso-marine ecosystems of the North Pacific

NASA Astrophysics Data System (ADS)

Batten, Sonia D.; David Hyrenbach, K.; Sydeman, William J.; Morgan, Ken H.; Henry, Michael F.; Yen, Peggy P. Y.; Welch, David W.

2006-02-01

To delineate mesoscale variability in marine ecosystems of the subarctic North Pacific and identify "hotspots" of biological activity, we conducted contemporaneous surveys of plankton and avifaunal communites in 2000-2003. Plankton samples were collected with a continuous plankton recorder (CPR) towed by a commercial vessel while a trained observer recorded marine bird distributions using strip-transect techniques. Near- and sub-surface physical oceanographic properties and productivity patterns were measured using a temperature data logger and satellite-derived chlorophyll a concentrations. We identified 10 distinct biological communities across the North Pacific, which we refer to as 'meso-marine ecosystems' (MME). We examined the characteristics of MME over multiple years to assess temporal persistence. MME were associated with different bathymetric domains and current systems. MME differed in the overall abundance and species composition of their fauna and, therefore, almost certainly in productivity. Regular monitoring of the spatial and temporal variability of MME will enhance our ability to detect and understand coupled climate-ecosystem responses, and, in turn, help guide ecosystem-based fisheries and wildlife management.

A Three Year Study of Four Species of Baleen Whales Occurrence in Faial-Pico Islands of the Azores and its Relation to Satellite-derived Surface Biophysical Products

NASA Astrophysics Data System (ADS)

Olio, M.; Peres dos Santos, R.; Tepsich, P.; Martins, A. M.

2016-02-01

In this study, data on the distribution of blue whales (Balaenoptera musculus), fin whales (Balaenoptera physalus), sei whales (Balaenoptera borealis) and humpback whales (Megaptera novaeangliae) in the waters around Faial and Pico islands (Azores archipelago, NE Atlantic) were collected during three years (2012 to 2014) for the months of March to July. During this period of time, we recorded 518 encounters with these species, being 73 in 2012, 86 in 2013 and 359 in 2014. Recordings were made during whale watching trips from two whale watching companies in those islands. In an attempt to understand better the different yearly occurrences, we used MODIS/AQUA-derived Sea Surface Temperature (SST) and Ocean Colour (chlorophyll a) to calculate weekly, bi-weekly, monthly, seasonal and yearly averages. Seasonal effects were removed from the data as well, to infer possible trends with time (2011 to 2014). Climatological anomalies were also calculated using MODIS data from 2003 to 2014. Results show that both years 2011 and 2012 present SST and OC negative anomalies through out the whole years. Higher chlorophyll a positive anomalies are observed during the spring of 2014. Maximum SST and chlorophyll a values ranged between 15.4 to 24.0 C and from 0.0 to 0.3 mg m-3, respectively. Sea surface tempature minimum and maxima anomalies ranged from -1.023 and 1.008 both for 2012, and -0.138 and 0.144 for chlorophyll a (for 2012 and 2014, respectively). Preliminary results suggest that phytoplankton concentration may explain the distribution of some whales species, particulary in 2014 where whale records were highest. These results are being further developed looking at mesoscale variability episodical occurrences on weekly to yearly data. Key words: baleen whales, whale watching, spatial and temporal distribution, remote sensing, mesoscale variability.

Analysis on biomass and productivity of epilithic algae and their relations to environmental factors in the Gufu River basin, Three Gorges Reservoir area, China.

PubMed

Ge, Jiwen; Wu, Shuyuan; Touré, Dado; Cheng, Lamei; Miao, Wenjie; Cao, Huafen; Pan, Xiaoying; Li, Jianfeng; Yao, Minmin; Feng, Liang

2017-12-01

The main purpose of this study conducted from August 2010 was to find biomass and productivity of epilithic algae and their relations to environmental factors and try to explore the restrictive factors affecting the growth of algae in the Gufu River, the one of the branches of Xiangxi River located in the Three Gorges Reservoir of the Yangtze River, Hubei Province, Central China. An improved method of in situ primary productivity measurement was utilized to estimate the primary production of the epilithic algae. It was shown that in rivers, lakes, and reservoirs, algae are the main primary producers and have a central role in the ecosystem. Chlorophyll a concentration and ash-free dry mass (AFDM) were estimated for epilithic algae of the Gufu River basin in Three Gorges Reservoir area. Environmental factors in the Gufu River ecosystem highlighted differences in periphyton chlorophyll a ranging from 1.49 mg m -2 (origin) to 69.58 mg m -2 (terminal point). The minimum and maximum gross primary productivity of epilithic algae were 96.12 and 1439.89 mg C m -2  day -1 , respectively. The mean net primary productivity was 290.24 mg C m -2  day -1 . The mean autotrophic index (AFDM:chlorophyll a) was 407.40. The net primary productivity, community respiration ratio (P/R ratio) ranged from 0.98 to 9.25 with a mean of 2.76, showed that autotrophic productivity was dominant in the river. Relationship between physicochemical characteristics and biomass was discussed through cluster and stepwise regression analysis which indicated that altitude, total nitrogen (TN), NO 3 - -N, and NH 4 + -N were significant environmental factors affecting the biomass of epilithic algae. However, a negative logarithmic relationship between altitude and the chlorophyll a of epilithic algae was high. The results also highlighted the importance of epilithic algae in maintaining the Gufu River basin ecosystems health.

Environmental and biological characteristics of Atlantic bluefin tuna and albacore spawning habitats based on their egg distributions

NASA Astrophysics Data System (ADS)

Reglero, Patricia; Santos, Maria; Balbín, Rosa; Laíz-Carrión, Raul; Alvarez-Berastegui, Diego; Ciannelli, Lorenzo; Jiménez, Elisa; Alemany, Francisco

2017-06-01

Tuna spawning habitats are traditionally characterized using data sets of larvae or gonads from mature adults and concurrent environmental variables. Data on egg distributions have never previously been used since molecular analyses are mandatory to identify tuna eggs to species level. However, in this study we use molecularly derived egg distribution data, in addition to larval data, to characterize hydrographic and biological drivers of the spatial distribution of eggs and larvae of bluefin Thunnus thynnus and albacore tuna Thunnus alalunga in the Balearic Sea, a main spawning area of these species in the Mediterranean. The effects of the hydrography, characterized by salinity, temperature and geostrophic velocity, on the spatial distributions of the eggs and larvae are investigated. Three biological variables are used to describe the productivity in the area: chlorophyll a in the mixed layer, chlorophyll a in the deep chlorophyll maximum and mesozooplankton biomass in the mixed layer. Our results point to the importance of salinity fronts and temperatures above a minimum threshold in shaping the egg and larval distribution of both species. The spatial distribution of the biotic variables was very scattered, and they did not emerge as significant variables in the presence-absence models. However, they became significant when modeling egg and larval abundances. The lack of correlation between the three biotic variables challenges the use of chlorophyll a to describe trophic scenarios for the larvae and suggests that the spatial distribution of resources is not persistent in time. The different patterns in relation to biotic variables across species and stages found in this and other studies indicate a still elusive understanding of the link between trophic levels involving tuna early larval stages. Our ability to improve short-term forecasting and long-term predictions of climate effects on the egg and larval distributions is discussed based on the consistency of the environmentally driven spatial patterns for the two species.

A numerical analysis of shipboard and coastal zone color scanner time series of new production within Gulf Stream cyclonic eddies in the South Atlantic Bight

NASA Technical Reports Server (NTRS)

Pribble, J. Raymond; Walsh, John J.; Dieterle, Dwight A.; Mueller-Karger, Frank E.

1994-01-01

Eddy-induced upwelling occurs along the western edge of the Gulf Stream between Cape Canaveral, Florida, and Cape Hatteras, North Carolina, in the South Atlantic Bight (SAB). Coastal zone color scanner images of 1-km resolution spanning the period April 13-21, 1979, were processed to examine these eddy features in relation to concurrent shipboard and current/temperature measurements at moored arrays. A quasi-one-dimensional (z), time dependent biological model, using only nitrate as a nutrient source, has been combined with a three-dimensional physical model in an attempt to replicate the observed phytoplankton field at the northward edge of an eddy. The model is applicable only to the SAB south of the Charleston Bump, at approximately 31.5 deg N, since no feature analogous to the bump exists in the model bathymetry. The modeled chlorophyll, nitrate, and primary production fields of the euphotic zone are very similar to those obtained from the satellite and shipboard data at the leading edges of the observed eddies south of the Charleston Bump. The horizontal and vertical simulated fluxes of nitrate and chlorophyll show that only approximately 10% of the upwelled nitrate is utilized by the phytoplankton of the modeled grid box on the northern edge of the cyclone, while approximately 75% is lost horizontally, with the remainder still in the euphotic zone after the 10-day period of the model. Loss of chlorophyll due to sinking is very small in this strong upwelling region of the cyclone. The model is relatively insensitive to variations in the sinking parameterization and the external nitrate and chlorophyll fields but is very sensitive to a reduction of the maximum potential growth rate to half that measured. Given the success of this model in simulating the new production of the selcted upwelling region, other upwelling regions for which measurements or successful models of physical and biological quantities and rates exist could be modeled similarly.

[Effects of simulating acid rain on photosynthesis and chlorophyll fluorescence parameters of Quercus glauca Quercus glauca].

PubMed

Wang, Sai; Yi, Li-Ta; Yu, Shu-Quan; Zhang, Chao; Shi, Jing-Jing

2014-08-01

At three levels of simulated acid rainfall intensities with pH values of 2.5 (severe), 40 (medium) and 5.6 (light) respectively, the responses of chlorophyll fluorescence and photosynthetic parameters of Quercus glauca seedlings were studied in three acid rainfall treatments, i. e. only the aboveground of seedlings exposed to acid rain (T1), both of the seedlings and soil exposed to acid rain (T2), only the soil exposed to acid rain (T3) compared with blank control (CK). Under the severe acid rainfall, T1 significantly inhibited chlorophyll synthesis, and thus reduced the primary photochemical efficiency of PS II ( F(v)/F(m)), potential activity of PS II (F(v)/F(o)) , apparent quantum (Y), net photosynthetic rate (P(n)), and transpiration rate (T(r)), but increased the light compensation point (LCP) and dark respiration rate (R(d)) of Q. glauca seedlings. T2 inhibited, but T3 played a little enhancement on the aforementioned parameters of Q. glauca seedlings. Under the conditions of medium and light acid rainfall intensities, the above parameters in the three treatments were higher than that of CK, except with lower R(d). The chlorophyll fluorescence and photosynthetic parameters showed a similar tendency in the three treatments, i. e. T2>T3 >T1. It indicated that T1 had the strongest inhibition on seedlings in condition of the severe acid rainfall, while T2 had the most dramatic facilitating effect on seedlings under the medium and light acid rainfall. Intensity of acid rainfall had significant influences on SPAD, F(v)/F(m), F(v)/F(o), Y, P(n), T(r), and maximum photosynthetic rate (A(max)), whereas treatments of acid rainfall affected SPAD, F(v)/F(m), Y, P(n), T(r), A(max) and light saturation point (LSP). The interaction of acid rainfall intensities and treatments played significant effects on SPAD, F(v)/F(m), Y, P(n) and A(max).

Hyperspectral and multispectral satellite sensors for mapping chlorophyll content in a Mediterranean Pinus sylvestris L. plantation

NASA Astrophysics Data System (ADS)

Navarro-Cerrillo, Rafael Mª; Trujillo, Jesus; de la Orden, Manuel Sánchez; Hernández-Clemente, Rocío

2014-02-01

A new generation of narrow-band hyperspectral remote sensing data offers an alternative to broad-band multispectral data for the estimation of vegetation chlorophyll content. This paper examines the potential of some of these sensors comparing red-edge and simple ratio indices to develop a rapid and cost-effective system for monitoring Mediterranean pine plantations in Spain. Chlorophyll content retrieval was analyzed with the red-edge R750/R710 index and the simple ratio R800/R560 index using the PROSPECT-5 leaf model and the Discrete Anisotropic Radiative Transfer (DART) and experimental approach. Five sensors were used: AHS, CHRIS/Proba, Hyperion, Landsat and QuickBird. The model simulation results obtained with synthetic spectra demonstrated the feasibility of estimating Ca + b content in conifers using the simple ratio R800/R560 index formulated with different full widths at half maximum (FWHM) at the leaf level. This index yielded a r2 = 0.69 for a FWHM of 30 nm and r2 = 0.55 for a FWHM of 70 nm. Experimental results compared the regression coefficients obtained with various multispectral and hyperspectral images with different spatial resolutions at the stand level. The strongest relationships where obtained using high-resolution hyperspectral images acquired with the AHS sensor (r2 = 0.65) while coarser spatial and spectral resolution images yielded a lower root mean square error (QuickBird r2 = 0.42; Landsat r2 = 0.48; Hyperion r2 = 0.56; CHRIS/Proba r2 = 0.57). This study shows the need to estimate chlorophyll content in forest plantations at the stand level with high spatial and spectral resolution sensors. Nevertheless, these results also show the accuracy obtained with medium-resolution sensors when monitoring physiological processes. Generating biochemical maps at the stand level could play a critical rule in the early detection of forest decline processes enabling their use in precision forestry.

[Estimation of forest canopy chlorophyll content based on PROSPECT and SAIL models].

PubMed

Yang, Xi-guang; Fan, Wen-yi; Yu, Ying

2010-11-01

The forest canopy chlorophyll content directly reflects the health and stress of forest. The accurate estimation of the forest canopy chlorophyll content is a significant foundation for researching forest ecosystem cycle models. In the present paper, the inversion of the forest canopy chlorophyll content was based on PROSPECT and SAIL models from the physical mechanism angle. First, leaf spectrum and canopy spectrum were simulated by PROSPECT and SAIL models respectively. And leaf chlorophyll content look-up-table was established for leaf chlorophyll content retrieval. Then leaf chlorophyll content was converted into canopy chlorophyll content by Leaf Area Index (LAD). Finally, canopy chlorophyll content was estimated from Hyperion image. The results indicated that the main effect bands of chlorophyll content were 400-900 nm, the simulation of leaf and canopy spectrum by PROSPECT and SAIL models fit better with the measured spectrum with 7.06% and 16.49% relative error respectively, the RMSE of LAI inversion was 0. 542 6 and the forest canopy chlorophyll content was estimated better by PROSPECT and SAIL models with precision = 77.02%.

Biogeochemical characteristics of mesoscale eddies in the generation zone off Valparaíso, Chile

NASA Astrophysics Data System (ADS)

Villegas, Valerie; Cornejo, Marcela; Molina, Verónica; Silva, Nelson; Hormazábal, Samuel

2016-04-01

The coastal area off Valparaiso is characterized by an intense mesoscale activity associated with eddies, which transport highly productive-coastal waters to the oligotrophic areas of the Subtropical Gyre. Among these, the Intrathermocline Anticyclonic Eddies (ITE's) which are forming in the eastern South Pacific, transport low oxygen- and high nutrients- subsurface water of Equatorial Subsurface Water (ESSW). These eddies have been well characterized in terms of generation rate, direction, speed and water transport. However, biogeochemical conditions in their origin and its temporal variability are not well assessed. The present study aims to determine the variability, spatially and temporally, of the biogeochemical properties in the water column at the eddies generation zone, off Punta Ángeles, Valparaíso (33° S). For this, a monthly time series was conducted between January and August 2016 where a cross-shore transect with six-stations was deployed (from coast to 16 nm). Each station was sampled with CTD-OF, while only in station 5 (1300 m depth) was sampled in 16 depth for biogeochemical variables: nutrients (NO3-, NO2-, PO4-3, Si(OH)4), greenhouse gases (CO2, CH4 and N2O), chlorophyll a, stable isotopes in particulate organic material (13C, 15N), content of organic carbon and nitrogen in POM. The spatial and temporal distribution shows the presence of subsurface cores (100 - 300 m) with water with high salinity (> 34.7 psu) and low oxygen content (< 0.5 mLṡL-1), associated with mesoscale subsurface structures. The largest vertical and horizontal extension of these structures was observed in January 2015. These subsurface structures showed a significant deficit of reactive nitrogen (N* < -10 μM), nitrite accumulation (> 0.6 μM) and the highest supersaturations of CO2 (110 - 344%) and N2O (107 - 407%). Along with this, the eddies generation zone presented a temporal variability of air-sea gases fluxes with the highest in the austral summer and autumn (from 67.64 to 9.12 mmolṡm-2ṡd-1, from 3.00 to 0.94 μmolṡm-2ṡd-1, and from 19.62 to 5.77 μmolṡm-2ṡd-1, for CO2, CH4 and N2O, respectively), while between June and August, the ocean-atmosphere flows were close to equilibrium (from 0.09 to -1.93 mmolṡm-2ṡd-1, from 0.40 to 0.03 μmolṡm-2ṡd-1, and from 0,29 to -0.02 μmolṡm-2ṡd-1, for CO2, CH4 and N2O, respectively). Acknowledgment: This work is part of the PIA 037.474 Project (PUCV) and the Instituto Milenio de Oceanografía (IMO-Chile).

Comprehensive chlorophyll composition in the main edible seaweeds.

PubMed

Chen, Kewei; Ríos, José Julián; Pérez-Gálvez, Antonio; Roca, María

2017-08-01

Natural chlorophylls present in seaweeds have been studied regarding their biological activities and health benefit effects. However, detailed studies regarding characterization of the complete chlorophyll profile either qualitatively and quantitatively are scarce. This work deals with the comprehensive spectrometric study of the chlorophyll derivatives present in the five main coloured edible seaweeds. The novel complete MS 2 characterization of five chlorophyll derivatives: chlorophyll c 2 , chlorophyll c 1 , purpurin-18 a, pheophytin d and phytyl-purpurin-18 a has allowed to obtain fragmentation patterns associated with their different structural features. New chlorophyll derivatives have been identified and quantified by first time in red, green and brown seaweeds, including some oxidative structures. Quantitative data of the chlorophyll content comes to achieve significant information for food composition databases in bioactive compounds. Copyright © 2017 Elsevier Ltd. All rights reserved.

Microzooplankton biomass distribution in Terra Nova Bay, Ross Sea (Antarctica)

NASA Astrophysics Data System (ADS)

Fonda Umani, S.; Monti, M.; Nuccio, C.

1998-11-01

This work describes the spatial and vertical distribution of microzooplankton (20-200 μm) abundance and biomass of the upper layers (0-100 m), collected during the first oceanographic Italian expedition in Antarctica (1987/1988) in Terra Nova Bay (Ross Sea). Biomass was estimated by using biovolume calculations and literature conversion factors. Sampling was carried out at three depths, surface, 50 and 100 m. The dominant taxa were made up of tintinnid ciliates, ciliates other than tintinnids, larvae of micrometazoa and heterotrophic dinoflagellates. The abundance of the total microplankton fraction had its absolute maximum in the center of Terra Nova Bay at the surface with 31 042 ind. dm -3. The areal and vertical distribution of heterotrophic microplankton biomass differs from that of abundance. On the basis of hydrological conditions, phytoplankton composition and biomass and microzooplankton biomass and structure it is possible to identify three groups of stations: 1—northern coastal stations (intermediate chlorophyll maxima, microphytoplankton prevalence, low microzooplankton biomass); 2—central stations (high surface chlorophyll, nanoplankton prevalence, high abundance of microzooplankton); 3—northern stations (deeper pycnocline, nanoplankton prevalence, high microzooplankton biomass at intermediate depths).

The Epiphytic Fern Elaphoglossum luridum (Fée) Christ. (Dryopteridaceae) from Central and South America: Morphological and Physiological Responses to Water Stress

PubMed Central

Minardi, Bruno Degaspari; Voytena, Ana Paula Lorenzen; Randi, Áurea Maria

2014-01-01

Elaphoglossum luridum (Fée) Christ. (Dryopteridaceae) is an epiphytic fern of the Atlantic Forest (Brazil). Anatomical and physiological studies were conducted to understand how this plant responds to water stress. The E. luridum frond is coriaceus and succulent, presenting trichomes, relatively thick cuticle, and sinuous cell walls in both abaxial and adaxial epidermis. Three treatments were analyzed: control, water deficit, and abscisic acid (ABA). Physiological studies were conducted through analysis of relative water content (RWC), photosynthetic pigments, chlorophyll a fluorescence, and malate content. No changes in RWC were observed among treatments; however, significant decreases in chlorophyll a content and photosynthetic parameters, including optimal irradiance (I opt) and maximum electron transport rate (ETRmax), were determined by rapid light curves (RLC). No evidence of crassulacean acid metabolism (CAM) pathway was observed in E. luridum in response to either water deficit or exogenous application of ABA. On the other hand, malate content decreased in the E. luridum frond after ABA treatment, seeming to downregulate malate metabolism at night, possibly through tricarboxylic acid (TCA) cycle regulation. PMID:25386618

Temporal variability in chlorophyll fluorescence of back-reef corals in Ofu, American Samoa

USGS Publications Warehouse

Piniak, G.A.; Brown, E.K.

2009-01-01

Change in the yield of chlorophyll a fluorescence is a common indicator of thermal stress in corals. The present study reports temporal variability in quantum yield measurements for 10 coral species in Ofu, American Samoa - a place known to experience elevated and variable seawater temperatures. In winter, the zooxanthellae generally had higher dark-adapted maximum quantum yield (F v/Fm), higher light- adapted effective quantum yield (??F/F'm), and lower relative electron transport rates (rETR) than in the summer. Temporal changes appeared unrelated to the expected bleaching sensitivity of corals. All species surveyed, with the exception of Montipora grisea, demonstrated significant temporal changes in the three fluorescence parameters. Fluorescence responses were influenced by the microhabitat - temporal differences in fluorescence parameters were usually observed in the habitat with a more variable temperature regime (pool 300), while differences in Fv/Fm between species were observed only in the more environmentally stable habitat (pool 400). Such species-specific responses and microhabitat variability should be considered when attempting to determine whether observed in situ changes are normal seasonal changes or early signs of bleaching. ?? 2009 Marine Biological Laboratory.

Biodiversity patterns of plankton assemblages at the extremes of the Red Sea.

PubMed

Pearman, J K; Kürten, S; Sarma, Y V B; Jones, B H; Carvalho, S

2016-03-01

The diversity of microbial plankton has received limited attention in the main basin of the Red Sea. This study investigates changes in the community composition and structure of prokaryotes and eukaryotes at the extremes of the Red Sea along cross-shelf gradients and between the surface and deep chlorophyll maximum. Using molecular methods to target both the 16S and 18S rRNA genes, it was observed that the dominant prokaryotic classes were Acidimicrobiia, Alphaproteobacteria and Cyanobacteria, regardless of the region and depth. The eukaryotes Syndiniophyceae and Dinophyceae between them dominated in the north, with Bacillariophyceae and Mamiellophyceae more prominent in the southern region. Significant differences were observed for prokaryotes and eukaryotes for region, depth and distance from shore. Similarly, it was noticed that communities became less similar with increasing distance from the shore. Canonical correspondence analysis at the class level showed that Mamiellophyceae and Bacillariophyceae correlated with increased nutrients and chlorophyll a found in the southern region, which is influenced by the input of Gulf of Aden Intermediate Water. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

An extended PROSPECT: Advance in the leaf optical properties model separating total chlorophylls into chlorophyll a and b.

PubMed

Zhang, Yao; Huang, Jingfeng; Wang, Fumin; Blackburn, George Alan; Zhang, Hankui K; Wang, Xiuzhen; Wei, Chuanwen; Zhang, Kangyu; Wei, Chen

2017-07-25

The PROSPECT leaf optical model has, to date, well-separated the effects of total chlorophyll and carotenoids on leaf reflectance and transmittance in the 400-800 nm. Considering variations in chlorophyll a:b ratio with leaf age and physiological stress, a further separation of total plant-based chlorophylls into chlorophyll a and chlorophyll b is necessary for advanced monitoring of plant growth. In this study, we present an extended version of PROSPECT model (hereafter referred to as PROSPECT-MP) that can combine the effects of chlorophyll a, chlorophyll b and carotenoids on leaf directional hemispherical reflectance and transmittance (DHR and DHT) in the 400-800 nm. The LOPEX93 dataset was used to evaluate the capabilities of PROSPECT-MP for spectra modelling and pigment retrieval. The results show that PROSPECT-MP can both simultaneously retrieve leaf chlorophyll a and b, and also performs better than PROSPECT-5 in retrieving carotenoids concentrations. As for the simulation of DHR and DHT, the performances of PROSPECT-MP are similar to that of PROSPECT-5. This study demonstrates the potential of PROSPECT-MP for improving capabilities of remote sensing of leaf photosynthetic pigments (chlorophyll a, chlorophyll b and carotenoids) and for providing a framework for future refinements in the modelling of leaf optical properties.

The Use of Ion Implantation for Materials Processing.

DTIC Science & Technology

1980-10-06

consists of a series of sections, each section being an annular insulator (glass) and a shaped metal electrode (polished aluminum ) cemented together. A...depending on the ion species, semiconductor material, attached materials (such as aluminum leads), implantation energy, and dose; but some devices are...concentration of subsurface carbon. Appearing directly beneath the oxide layer, the C concentration first reaches a maximum of about five times the bulk

Subsurface Assessment at McMurdo Station, Antarctica

DTIC Science & Technology

2017-02-01

collected at the T-site for design and construction of a foundation for a wind turbine (after Oswell et al. 2010...foundation for a wind turbine (after Oswell et al. 2010). 5.3 Surface snowmelt and frost susceptibility The gravelly sand with silts found in this...maximum unfrozen density with low moisture content. Compaction of fill materials for con- structing wind turbine foundations at the T-site commenced

Urban heat islands in the subsurface of German cities

NASA Astrophysics Data System (ADS)

Menberg, K.; Blum, P.; Zhu, K.; Bayer, P.

2012-04-01

In the subsurface of many cities there are widespread and persistent thermal anomalies (subsurface urban heat islands) that result in a warming of urban aquifers. The reasons for this heating are manifold. Possible heat sources are basements of buildings, leakage of sewage systems, buried district heating networks, re-injection of cooling water and solar irradiation on paved surfaces. In the current study, the reported groundwater temperatures in several German cities, such as Berlin, Munich, Cologne and Karlsruhe, are compared. Available data sets are supplemented by temperature measurements and depth profiles in observation wells. Trend analyses are conducted with time series of groundwater temperatures, and three-dimensional groundwater temperature maps are provided. In all investigated cities, pronounced positive temperature anomalies are present. The distribution of groundwater temperatures appears to be spatially and temporally highly variable. Apparently, the increased heat input into the urban subsurface is controlled by very local and site-specific parameters. In the long-run, the superposition of various heat sources results in an extensive temperature increase. In many cases, the maximum temperature elevation is found close to the city centre. Regional groundwater temperature differences between the city centre and the rural background are up to 5 °C, with local hot spots of even more pronounced anomalies. Particular heat sources, like cooling water injections or case-specific underground constructions, can cause local temperatures > 20°C in the subsurface. Examination of the long-term variations in isotherm maps shows that temperatures have increased by about 1°C in the city, as well as in the rural background areas over the last decades. This increase could be reproduced with trend analysis of temperature data gathered from several groundwater wells. Comparison between groundwater and air temperatures in Karlsruhe, for example, also indicates a spatial correlation between the urban heat island effect in the subsurface and in the atmosphere.

Seasonal dynamics of light absorption by chromophoric dissolved organic matter (CDOM) in the NW Mediterranean Sea (BOUSSOLE site)

NASA Astrophysics Data System (ADS)

Organelli, Emanuele; Bricaud, Annick; Antoine, David; Matsuoka, Atsushi

2014-09-01

We analyze a two-year time-series of chromophoric dissolved organic matter (CDOM) light absorption measurements in the upper 400 m of the water column at the BOUSSOLE site in the NW Mediterranean Sea. The seasonal dynamics of the CDOM light absorption coefficients at 440 nm (acdom(440)) is essentially characterized by (i) subsurface maxima forming in spring and progressively reinforcing throughout summer, (ii) impoverishment in the surface layer throughout summer and (iii) vertical homogeneity in winter. Seasonal variations of the spectral dependence of CDOM absorption, as described by the exponential slope value (Scdom), are characterized by highest values in summer and autumn at the surface and low values at the depths of acdom(440) subsurface maxima or just below them. Variations of acdom(440) are likely controlled by microbial digestion of phytoplankton cells, which leads to CDOM production, and by photochemical destruction (photobleaching), which leads to CDOM degradation. Photobleaching is also the main driver of Scdom variations. Consistently with previous observations, acdom(440) for a given chlorophyll a concentration is higher than expected from Case I waters bio-optical models. The total non-water light absorption budget shows that surface waters at the BOUSSOLE site are largely dominated by CDOM during all seasons but the algal bloom in March and April. These results improve the knowledge of CDOM absorption dynamics in the Mediterranean Sea, which is scarcely documented. In addition, they open the way to improved algorithms for the retrieval of CDOM absorption from field or satellite radiometric measurements.

Dynamics of short-term acclimation to UV radiation in marine diatoms.

PubMed

Fouqueray, Manuela; Mouget, Jean-Luc; Morant-Manceau, Annick; Tremblin, Gérard

2007-11-12

In order to investigate the dynamics of the acclimation of marine diatoms to ultraviolet radiation (UVR), Amphora coffeaeformis, Odontella aurita and Skeletonema costatum were exposed for 5 h per day to a combination of UVA and UVB (UVBR/UVAR ratio 4.5%) with a total UVR daily dose of 110 kJ m(-2), which is equivalent to that observed in the natural environment. This treatment was applied in the middle of the photoperiod and was repeated on five successive days. During the UVR treatment, chlorophyll fluorescence parameters were monitored, damage and repair constants were calculated from effective quantum yield values (phi(PSII)), and rapid light curves (electron transport rate versus irradiance curves using short light steps of different intensity) were plotted to determine the maximum relative electron transport rate (rETR(max)) and maximum light use efficiency (alpha). In all species the growth rate was lower than control from day 1-3, but increased thereafter, except for S. costatum. The cellular chlorophyll a content increased significantly with repeated daily exposure to UVR for A. coffeaeformis only. In all species, the fluorescence parameters (F(m), the maximum fluorescence level measured in the dark, phi(PSII), rETR(max) and alpha) decreased during UVR exposure, in contrast to F(0) (the minimum fluorescence level measured in the dark). The response to UVR stress was species-specific. S. costatum was very sensitive, and failed to survive for more than three days, whereas A. coffeaeformis and O. aurita were able to acclimate to UVR stress. These two species used different strategies. In A. coffeaeformis, the repair constant was lower than the damage constant, but phi(PSII) values returned to baseline values at the beginning of each experimental day, indicating that an effective active recovery process occurred after stress. In O. aurita, the repair processes took place during the stress, and could account for the UVR tolerance of this species.

Seasonal Variation in the Spatial Distribution of Basking Sharks (Cetorhinus maximus) in the Lower Bay of Fundy, Canada

PubMed Central

Siders, Zachary A.; Westgate, Andrew J.; Johnston, David W.; Murison, Laurie D.; Koopman, Heather N.

2013-01-01

The local distribution of basking sharks in the Bay of Fundy (BoF) is unknown despite frequent occurrences in the area from May to November. Defining this species’ spatial habitat use is critical for accurately assessing its Special Concern conservation status in Atlantic Canada. We developed maximum entropy distribution models for the lower BoF and the northeast Gulf of Maine (GoM) to describe spatiotemporal variation in habitat use of basking sharks. Under the Maxent framework, we assessed model responses and distribution shifts in relation to known migratory behavior and local prey dynamics. We used 10 years (2002-2011) of basking shark surface sightings from July-October acquired during boat-based surveys in relation to chlorophyll-a concentration, sea surface temperature, bathymetric features, and distance to seafloor contours to assess habitat suitability. Maximum entropy estimations were selected based on AICc criterion and used to predict habitat utilizing three model-fitting routines as well as converted to binary suitable/non-suitable habitat using the maximum sensitivity and specificity threshold. All models predicted habitat better than random (AUC values >0.796). From July-September, a majority of habitat was in the BoF, in waters >100 m deep, and in the Grand Manan Basin. In October, a majority of the habitat shifted southward into the GoM and to areas >200 m deep. Model responses suggest that suitable habitat from July - October is dependent on a mix of distance to the 0, 100, 150, and 200 m contours but in some models on sea surface temperature (July) and chlorophyll-a (August and September). Our results reveal temporally dynamic habitat use of basking sharks within the BoF and GoM. The relative importance of predictor variables suggests that prey dynamics constrained the species distribution in the BoF. Also, suitable habitat shifted minimally from July-September providing opportunities to conserve the species during peak abundance in the region. PMID:24324747

Yucca Mountain Project Subsurface Facilities Design

DOE Office of Scientific and Technical Information (OSTI.GOV)

A. Linden; R.S. Saunders; R.J. Boutin

2002-11-19

Four units of the Topopah Springs formation (volcanic tuff) are considered for the proposed repository: the upper lithophysal, the middle non-lithophysal, the lower lithophysal, and the lower non-lithophysal. Yucca Mountain was recently designated the site for a proposed repository to dispose of spent nuclear fuel and high-level radioactive waste. Work is proceeding to advance the design of subsurface facilities to accommodate emplacing waste packages in the proposed repository. This paper summarized recent progress in the design of subsurface layout of the proposed repository. The original Site Recommendation (SR) concept for the subsurface design located the repository largely within the lowermore » lithophysal zone (approximately 73%) of the Topopah The Site Recommendation characterized area suitable for emplacement consisted of the primary upper block, the lower block and the southern upper block extension. The primary upper block accommodated the mandated 70,000 metric tons of heavy metal (MTHM) at a 1.45 kW/m hear heat load. Based on further study of the Site Recommendation concept, the proposed repository siting area footprint was modified to make maximum use of available site characterization data, and thus, reduce uncertainties associated with performance assessment. As a result of this study, a modified repository footprint has been proposed and is presently being review for acceptance by the DOE. A panel design concept was developed to reduce overall costs and reduce the overall emplacement schedule. This concept provides flexibility to adjust the proposed repository subsurface layout with time, as it makes it unnecessary to ''commit'' to development of a large single panel at the earliest stages of construction. A description of the underground layout configuration and influencing factors that affect the layout configuration are discussed in the report.« less

Capabilities of seismic and georadar 2D/3D imaging of shallow subsurface of transport route using the Seismobile system

NASA Astrophysics Data System (ADS)

Pilecki, Zenon; Isakow, Zbigniew; Czarny, Rafał; Pilecka, Elżbieta; Harba, Paulina; Barnaś, Maciej

2017-08-01

In this work, the capabilities of the Seismobile system for shallow subsurface imaging of transport routes, such as roads, railways, and airport runways, in different geological conditions were presented. The Seismobile system combines the advantages of seismic profiling using landstreamer and georadar (GPR) profiling. It consists of up to four seismic measuring lines and carriage with a suspended GPR antenna. Shallow subsurface recognition may be achieved to a maximum width of 10.5 m for a distance of 3.5 m between the measurement lines. GPR measurement is performed in the axis of the construction. Seismobile allows the measurement time, labour and costs to be reduced due to easy technique of its installation, remote data transmission from geophones to accompanying measuring modules, automated location of the system based on GPS and a highly automated method of seismic wave excitation. In this paper, the results of field tests carried out in different geological conditions were presented. The methodologies of acquisition, processing and interpretation of seismic and GPR measurements were broadly described. Seismograms and its spectrum registered by Seismobile system were compared to the ones registered by Geode seismograph of Geometrix. Seismic data processing and interpretation software allows for the obtaining of 2D/3D models of P- and S-wave velocities. Combined seismic and GPR results achieved sufficient imaging of shallow subsurface to a depth of over a dozen metres. The obtained geophysical information correlated with geological information from the boreholes with good quality. The results of performed tests proved the efficiency of the Seismobile system in seismic and GPR imaging of a shallow subsurface of transport routes under compound conditions.

Tropical North Atlantic subsurface warming events as a fingerprint for AMOC variability during Marine Isotope Stage 3

NASA Astrophysics Data System (ADS)

Parker, Andrew O.; Schmidt, Matthew W.; Chang, Ping

2015-11-01

The role of Atlantic Meridional Overturning Circulation (AMOC) as the driver of Dansgaard-Oeschger (DO) variability that characterized Marine Isotope Stage 3 (MIS 3) has long been hypothesized. Although there is ample proxy evidence suggesting that DO events were robust features of glacial climate, there is little data supporting a link with AMOC. Recently, modeling studies and subsurface temperature reconstructions have suggested that subsurface warming across the tropical North Atlantic can be used to fingerprint a weakened AMOC during the deglacial because a reduction in the strength of the western boundary current allows warm salinity maximum water of the subtropical gyre to enter the deep tropics. To determine if AMOC variability played a role during the DO cycles of MIS 3, we present new, high-resolution Mg/Ca and δ18O records spanning 24-52 kyr from the near-surface dwelling planktonic foraminifera Globigerinoides ruber and the lower thermocline dwelling planktonic foraminifera Globorotalia truncatulinoides in Southern Caribbean core VM12-107 (11.33°N, 66.63°W, 1079 m depth). Our subsurface Mg/Ca record reveals abrupt increases in Mg/Ca ratios (the largest equal to a 4°C warming) during the interstadial-stadial transition of most DO events during this period. This change is consistent with reconstructions of subsurface warming events associated with cold events across the deglacial using the same core. Additionally, our data support the conclusion reached by a recently published study from the Florida Straits that AMOC did not undergo significant reductions during Heinrich events 2 and 3. This record presents some of the first high-resolution marine sediment derived evidence for variable AMOC during MIS 3.

On the role of mesoscale eddies for the biological productivity and biogeochemistry in the eastern tropical Pacific Ocean off Peru

NASA Astrophysics Data System (ADS)

Stramma, L.; Bange, H. W.; Czeschel, R.; Lorenzo, A.; Frank, M.

2013-11-01

Mesoscale eddies seem to play an important role for both the hydrography and biogeochemistry of the eastern tropical Pacific Ocean (ETSP) off Peru. However, detailed surveys of these eddies are not available, which has so far hampered an in depth understanding of their implications for nutrient distribution and biological productivity. In this study, three eddies along a section at 16°45´ S have been surveyed intensively during R/V Meteor cruise M90 in November 2012. A coastal mode water eddy, an open ocean mode water eddy and an open ocean cyclonic eddy have been identified and sampled in order to determine both their hydrographic properties and their influence on the biogeochemical setting of the ETSP. In the thermocline the temperature of the coastal anticyclonic eddy was up to 2 °C warmer, 0.2 more saline and the swirl velocity was up to 35 cm s-1. The observed temperature and salinity anomalies, as well as swirl velocities of both types of eddies were about twice as large as had been described for the mean eddies in the ETSP. The observed heat and salt anomalies (AHA, ASA) of the anticyclonic eddy near the shelf-break of 17.7 × 1018 J and 36.6 × 1010 kg are more than twice as large as the mean AHA and ASA for the ETSP. We found that the eddies contributed to the productivity by maintaining pronounced subsurface maxima of chlorophyll of up to 6 μg L-1. Based on a comparison of the coastal (young) mode water eddy and the open ocean (old) mode water eddy we suggest that the ageing of eddies when they detach from the shelf-break and move westward to the open ocean influences the eddies' properties: chlorophyll maxima are reduced to about half (2.5-3 μg L-1) and nutrients are subducted. However, different settings at the time of formation may also contribute to the observed differences between the young and old mode water eddies. The coastal mode water eddy was found to be a site of nitrogen (N) loss in the OMZ with a maximum ΔNO3- anomaly (i.e. N loss) of about -25 μmol L-1 in 250 m water depth, whereas, the open ocean mode water and cyclonic eddies were of minor and negligible importance for the N loss, respectively. Our results show that the important role of eddies for the distribution of nutrients, as well as biogeochemical processes in the ETSP (and other OMZ/upwelling regions) can only be fully deciphered and understood through dedicated high spatial and temporal resolution oceanographic/biogeochemical surveys.

Spatial patterns in abundance, taxonomic composition and carbon biomass of nano- and microphytoplankton in Subarctic and Arctic Seas

NASA Astrophysics Data System (ADS)

Crawford, David W.; Cefarelli, Adrián O.; Wrohan, Ian A.; Wyatt, Shea N.; Varela, Diana E.

2018-03-01

In the summers of 2007 and 2008, we studied assemblages of nano- and microphytoplankton from the subsurface chlorophyll maximum (SCM) across five broad oceanographic domains in the seas surrounding northern North America. These domains are the eastern Subarctic North Pacific (ESNP), Bering and Chukchi Seas (BE-CH), Beaufort Sea and Canada Basin (BS-CB), Canadian Arctic Archipelago (CAA), and Baffin Bay and Labrador Sea (BB-LS). Average abundance and total carbon biomass (C) of phytoplankton (>2 μm) varied ∼10-fold and ∼20-fold, respectively, across the five domains. In the BE-CH, CAA and BB-LS, diatoms averaged 35-70% and dinoflagellates 11-45% of total phytoplankton C (>2 μm), whereas in the ESNP and BS-CB, unidentified flagellates/coccoids (2-8 μm) represented a greater proportion of total C (27% and 39% respectively) than in the other domains. In the BE-CH and BB-LS, phytoplankton C (>2 μm) was dominated by dinoflagellates of the genus Gymnodinium, centric diatoms including Thalassiosira spp. and Chaetoceros spp., unidentified flagellates/coccoids (2-8 μm), and cryptomonads. In contrast, diatoms such as Thalassiosira spp. and its resting spores dominated C in the CAA, with dinoflagellates being less significant than in the BE-CH and BB-LS. Unidentified flagellates/coccoids (2-8 μm), Gymnodinium spp., and cryptomonads dominated in the ESNP, and particularly in the BS-CB, where diatoms contributed only 18% of the very low levels of total phytoplankton C (>2 μm). Phytoplankton C (>2 μm) to chlorophyll a ratios (phyto C:chl a) averaged only 31 g C g chl a-1 in the oligotrophic BS-CB domain, and 51-150 g C g chl a-1 in the other domains, whereas ratios of biogenic silica to phytoplankton C (>2 μm) (bSi:phyto C) were lowest in the eastern domains. Estimates of phytoplankton C were highly sensitive to the choice of C to cell volume equations (C:vol) adopted in the calculations, particularly in diatom-rich areas. This study highlights how diatoms and dinoflagellates are the main drivers of large-scale variations in C biomass for phytoplankton (> 2 μm), whereas unidentified flagellates/coccoids (2-8 μm) make a significant contribution to C biomass in oligotrophic domains, such as BS-CB, where diatoms and dinoflagellates are less abundant. Reduced surface water density (σT) was associated with deeper SCM layers, and with decreased C biomass of unidentified flagellates/coccoids (2-8 μm). These observations confirm recent studies highlighting the role of surface water stratification caused by melting sea ice in shaping nano- and microphytoplankton assemblages.

The Use of a Chlorophyll Meter (SPAD-502) for Field Determinations of Red Mangrove (Rhizophora Mangle L.) Leaf Chlorophyll Amount

NASA Technical Reports Server (NTRS)

Connelly, Xana M.

1997-01-01

The red mangrove Rhizophora mangle L., is a halophytic woody spermatophyte common to the land-sea interface of tropical and subtropical intertidal zones. It has been reported that 60 to 75% of the coastline of the earth's tropical regions are lined with mangroves. Mangroves help prevent shoreline erosion, provide breeding, nesting and feeding areas for many marine animals and birds. Mangroves are important contributors of primary production in the coastal environment, and this is largely proportional to the standing crop of leaf chlorophylls. Higher intensities of ultraviolet radiation, resulting from stratospheric ozone depletion, can lead to a reduction of chlorophyll in terrestrial plants. Since the most common method for determining chlorophyll concentration is by extraction and this is labor intensive and time consuming, few studies on photosynthetic pigments of mangroves have been reported. Chlorophyll meter readings have been related to leaf chlorophyll content in apples and maples. It has also been correlated to nitrogen status in corn and cotton. Peterson et al., (1993) used a chlorophyll meter to detect nitrogen deficiency in crops and in determining the need for additional nitrogen fertilizer. Efforts to correlate chlorophyll meter measurements to chlorophyll content of mangroves have not been reported. This paper describes the use of a hand-held chlorophyll meter (Minolta SPAD-502) to determine the amount of red mangrove foliar chlorophyll present in the field.

Indicators: Chlorophyll a

EPA Pesticide Factsheets

Chlorophyll allows plants (including algae) to photosynthesize, i.e., use sunlight to convert simple molecules into organic compounds. Chlorophyll a is the predominant type of chlorophyll found in green plants and algae.

Dynamics and stoichiometry of nutrients and phytoplankton in waters influenced by the oxygen minimum zone in the eastern tropical Pacific

NASA Astrophysics Data System (ADS)

Franz, Jasmin; Krahmann, Gerd; Lavik, Gaute; Grasse, Patricia; Dittmar, Thorsten; Riebesell, Ulf

2012-04-01

The tropical South East Pacific is characterized by strong coastal upwelling on the narrow continental shelf and an intense oxygen minimum zone (OMZ) in the intermediate water layer. These hydrographic properties are responsible for a permanent supply of intermediate water masses to the surface rich in nutrients and with a remarkably low inorganic N:P stoichiometry. To investigate the impact of OMZ-influenced upwelling waters on phytoplankton growth, elemental and taxonomical composition we measured hydrographic and biogeochemical parameters along an east-west transect at 10°S in the tropical South East Pacific, stretching from the upwelling region above the narrow continental shelf to the well-stratified oceanic section of the eastern boundary regime. New production in the area of coastal upwelling was driven by large-sized phytoplankton (e.g. diatoms) with generally low N:P ratios (<16:1). While nitrate and phosphate concentrations were at levels not limiting phytoplankton growth along the entire transect, silicate depletion prohibited diatom growth further off-shore. A deep chlorophyll a maximum consisting of pico-/nano- (Synechococcus, flagellates) and microphytoplankton occurred within a pronounced thermocline in subsurface waters above the shelf break and showed intermediate N:P ratios close to Redfield proportions. High PON:POP (>20:1) ratios were observed in the stratified open ocean section of the transect, coinciding with the abundance of two strains of the pico-cyanobacterium Prochlorococcus; a high-light adapted strain in the surface layer and a low-light adapted strain occurring along the oxic-anoxic transition zone below the thermocline. Excess phosphate present along the entire transect did not appear to stimulate growth of nitrogen-fixing phytoplankton, as pigment fingerprinting did not indicate the presence of diazotrophic cyanobacteria at any of our sampling stations. Instead, a large fraction of the excess phosphate generated within the oxygen minimum zone was consumed by non-Redfield production of large phytoplankton in shelf surface waters.

Vertical structure of the phytoplankton community associated with a coastal plume in the Gulf of Mexico

USGS Publications Warehouse

Wawrik, B.; Paul, J.H.; Campbell, L.; Griffin, D.; Houchin, L.; Fuentes-Ortega, A.; Muller-Karger, F.

2003-01-01

Low salinity plumes of coastal origin are occasionally found far offshore, where they display a distinct color signature detectable by satellites. The impact of such plumes on carbon fixation and phytoplankton community structure in vertical profiles and on basin wide scales is poorly understood. On a research cruise in June 1999, ocean-color satellite-images (Sea-viewing Wide Field-of-view Sensor, SeaWiFS) were used in locating a Mississippi River plume in the eastern Gulf of Mexico. Profiles sampled within and outside of the plume were analyzed using flow cytometry, HPLC pigment analysis and primary production using 14C incorporation. Additionally, RubisCO large subunit (rbcL) gene expression was measured by hybridization of extracted RNA using 3 full-length RNA gene probes specific for individual phytoplankton clades. We also used a combination of RT-PCR/PCR and TA cloning in order to generate cDNA and DNA rbcL clone libraries from samples taken in the plume. Primary productivity was greatest in the low salinity surface layer of the plume. The plume was also associated with high Synechococcus counts and a strong peak in Form IA rbcL expression. Form IB rbcL (green algal) mRNA was abundant at the subsurface chlorophyll maximum (SCM), whereas Form ID rbcL (chromophytic) expression showed little vertical structure. Phylogenetic analysis of cDNA libraries demonstrated the presence of Form IA rbcL Synechococcus phylotypes in the plume. Below the plume, 2 spatially separated and genetically distinct rbcL clades of Prochlorococcus were observed. This indicated the presence of the high- and low-light adapted clades of Prochlorococcus. A large and very diverse clade of Prymnesiophytes was distributed throughout the water column, whereas a clade of closely related prasinophytes may have dominated at the SCM. These data indicate that the Mississippi river plume may dramatically alter the surface picoplankton composition of the Gulf of Mexico, with Synechococcus displacing Prochlorococcus in the surface waters.

Dissolved low-molecular weight thiol concentrations from the U.S. GEOTRACES North Atlantic Ocean zonal transect

NASA Astrophysics Data System (ADS)

Swarr, Gretchen J.; Kading, Tristan; Lamborg, Carl H.; Hammerschmidt, Chad R.; Bowman, Katlin L.

2016-10-01

Low-molecular weight thiols, including cysteine and glutathione, are biomolecules involved in a variety of metabolic pathways and act as important antioxidant and metal buffering agents. In this last capacity, they represent a potential mechanism for modulating the bioavailability and biogeochemistry of many trace elements in the ocean, particularly for chalcophilic elements (e.g., Cu, Zn, Cd, Ag and Hg). For this reason, and in the context of the international GEOTRACES program that seeks to understand the biogeochemistry of trace elements in the ocean, we measured the concentration of individual dissolved low-molecular weight thiols during the U.S. GEOTRACES North Atlantic Zonal Transect (USGNAZT). Only two thiols were identified, cysteine and glutathione, in contrast to results from the northeast subarctic Pacific Ocean, where the dipeptides glycine-cysteine and arginine-cysteine were also present and γ-glutamylcysteine was dominant. Concentrations of cysteine and glutathione in the North Atlantic Ocean were lower than in the Pacific and ranged from below detection ( 0.01 nM) to 0.61 nM of cysteine and up to 1.0 nM of glutathione, with cysteine generally more abundant than glutathione. Vertical profiles of cysteine and glutathione were broadly consistent with their biological production, being more abundant in surface water and usually below detection at depths greater than about 200 m. Subsurface concentration maxima, often co-incident with the deep chlorophyll maximum, were frequently observed but not universal. We conclude that cysteine and glutathione do not make up significant portions of complexation capacity for Cu and Zn in the upper open ocean but could be important for Cd, Hg, and potentially other chalcophiles. Extremely low concentrations of cysteine and glutathione in deep water suggest that higher molecular-weight thiols are a more important ligand class for chalcophiles in that portion of the ocean.

Impact of river discharge, upwelling and vertical mixing on the nutrient loading and productivity of the Canadian Beaufort Shelf

NASA Astrophysics Data System (ADS)

Tremblay, J.-É.; Raimbault, P.; Garcia, N.; Lansard, B.; Babin, M.; Gagnon, J.

2014-09-01

The concentrations and elemental stoichiometry of particulate and dissolved pools of carbon (C), nitrogen (N), phosphorus (P) and silicon (Si) on the Canadian Beaufort Shelf during summer 2009 (MALINA program) were assessed and compared with those of surface waters provided by the Mackenzie river as well as by winter mixing and upwelling of upper halocline waters at the shelf break. Neritic surface waters showed a clear enrichment in dissolved and particulate organic carbon (DOC and POC, respectively), nitrate, total particulate nitrogen (TPN) and dissolved organic nitrogen (DON) originating from the river. Silicate as well as bulk DON and DOC declined in a near-conservative manner away from the delta's outlet, whereas nitrate dropped non-conservatively to very low background concentrations inside the brackish zone. By contrast, the excess of soluble reactive P (SRP) present in oceanic waters declined in a non-conservative manner toward the river outlet, where concentrations were very low and consistent with P shortage in the Mackenzie River. These opposite gradients imply that the admixture of Pacific-derived, SRP-rich water is necessary to allow phytoplankton to use river-derived nitrate and to a lesser extent DON. A coarse budget based on concurrent estimates of primary production shows that river N deliveries support a modest fraction of primary production when considering the entire shelf, due to the ability of phytoplankton to thrive in the subsurface chlorophyll maximum beneath the thin, nitrate-depleted river plume. Away from shallow coastal bays, local elevations in the concentration of primary production and dissolved organic constituents were consistent with upwelling at the shelf break. By contrast with shallow winter mixing, nutrient deliveries by North American rivers and upwelling relax surface communities from N limitation and permit a more extant utilization of the excess SRP entering through the Bering Strait. In this context, increased nitrogen supply by rivers and upwelling potentially alters the vertical distribution of the excess P exported into the North Atlantic.

Optics of the Offshore Columbia River Plume from Glider Observations and Satellite Imagery

NASA Astrophysics Data System (ADS)

Saldias, G.; Shearman, R. K.; Barth, J. A.; Tufillaro, N.

2016-02-01

The Columbia River (CR) is the largest source of freshwater along the U.S. Pacific coast. The resultant plume is often transported southward and offshore forming a large buoyant feature off Oregon and northern California in spring-summer - the offshore CR plume. Observations from autonomous underwater gliders and Moderate Resolution Imaging Spectroradiometer (MODIS) satellite imagery are used to characterize the optics of the offshore CR plume off Newport, Oregon. Vertical sections, under contrasting river flow conditions, reveal a low-salinity and warm surface layer of 20-25 m (fresher in spring and warmer in summer), high Colored Dissolved Organic Matter (CDOM) concentration and backscatter, and associated with the base of the plume high chlorophyll fluorescence. Plume characteristics vary in the offshore direction as the warm and fresh surface layer thickens progressively to an average 30-40 m of depth 270-310 km offshore; CDOM, backscatter, and chlorophyll fluorescence decrease in the upper 20 m and increase at subsurface levels (30-50 m depth). MODIS normalized water-leaving radiance (nLw(λ)) spectra for CR plume cases show enhanced water-leaving radiance at green bands (as compared to no-CR plume cases) up to 154 km from shore. Farther offshore, the spectral shapes for both cases are very similar, and consequently, a contrasting color signature of low-salinity plume water is practically imperceptible from ocean color remote sensing. Empirical algorithms based on multivariate regression analyses of nLw(λ) plus Sea Surface Temperature (SST) data produce more accurate results detecting offshore plume waters than previous studies using single visible bands (e.g. adg(412) or nLw(555)).

Search for life on Mars in surface samples: Lessons from the 1999 Marsokhod rover field experiment

USGS Publications Warehouse

Newsom, Horton E.; Bishop, J.L.; Cockell, C.; Roush, T.L.; Johnson, J. R.

2001-01-01

The Marsokhod 1999 field experiment in the Mojave Desert included a simulation of a rover-based sample selection mission. As part of this mission, a test was made of strategies and analytical techniques for identifying past or present life in environments expected to be present on Mars. A combination of visual clues from high-resolution images and the detection of an important biomolecule (chlorophyll) with visible/near-infrared (NIR) spectroscopy led to the successful identification of a rock with evidence of cryptoendolithic organisms. The sample was identified in high-resolution images (3 times the resolution of the Imager for Mars Pathfinder camera) on the basis of a green tinge and textural information suggesting the presence of a thin, partially missing exfoliating layer revealing the organisms. The presence of chlorophyll bands in similar samples was observed in visible/NIR spectra of samples in the field and later confirmed in the laboratory using the same spectrometer. Raman spectroscopy in the laboratory, simulating a remote measurement technique, also detected evidence of carotenoids in samples from the same area. Laboratory analysis confirmed that the subsurface layer of the rock is inhabited by a community of coccoid Chroococcidioposis cyanobacteria. The identification of minerals in the field, including carbonates and serpentine, that are associated with aqueous processes was also demonstrated using the visible/NIR spectrometer. Other lessons learned that are applicable to future rover missions include the benefits of web-based programs for target selection and for daily mission planning and the need for involvement of the science team in optimizing image compression schemes based on the retention of visual signature characteristics. Copyright 2000 by the American Geophysical Union.

Chlorophyll loss associated with heat-induced senescence in bentgrass.

PubMed

Jespersen, David; Zhang, Jing; Huang, Bingru

2016-08-01

Heat stress-induced leaf senescence is characterized by the loss of chlorophyll from leaf tissues. The objectives of this study were to examine genetic variations in the level of heat-induced leaf senescence in hybrids of colonial (Agrostis capillaris)×creeping bentgrass (Agrostis stolonifera) contrasting in heat tolerance, and determine whether loss of leaf chlorophyll during heat-induced leaf senescence was due to suppressed chlorophyll synthesis and/or accelerated chlorophyll degradation in the cool-season perennial grass species. Plants of two hybrid backcross genotypes ('ColxCB169' and 'ColxCB190') were exposed to heat stress (38/33°C, day/night) for 28 d in growth chambers. The analysis of turf quality, membrane stability, photochemical efficiency, and chlorophyll content demonstrated significant variations in the level of leaf senescence induced by heat stress between the two genotypes, with ColXCB169 exhibiting a lesser degree of decline in chlorophyll content, photochemical efficiency and membrane stability than ColXCB190. The assays of enzymatic activity or gene expression of several major chlorophyll-synthesizing (porphobilinogen deaminase, Mg-chelatase, protochlorophyllide-reductase) and chlorophyll-degrading enzymes (chlorophyllase, pheophytinase, and chlorophyll-degrading peroxidase) indicated heat-induced decline in leaf chlorophyll content was mainly due to accelerated chlorophyll degradation, as manifested by increased gene expression levels of chlorophyllase and pheophytinase, and the activity of pheophytinase (PPH), while chlorophyll-synthesizing genes and enzymatic activities were not differentially altered by heat stress in the two genotypes. The analysis of heat-induced leaf senescence of pph mutants of Arabidopsis further confirmed that PPH could be one enzymes that plays key roles in regulating heat-accelerated chlorophyll degradation. Further research on enzymes responsible in part for the loss of chlorophyll during heat-induced senescence could aid in the development of genotypes with stay-green traits either through marker assisted selection or transgenic approaches. Copyright © 2016. Published by Elsevier Ireland Ltd.

A Developmental Study of Photosystem I Peripheral Chlorophyll Proteins 1

PubMed Central

Mullet, John E.; Burke, John J.; Arntzen, Charles J.

1980-01-01

An isolated “native” photosystem I (PSI complex) contains three spectral populations of chlorophyll a antennae (Mullet, Burke, Arntzen 1980 Plant Physiol 65: 814-822). It was hypothesized that nearly one-half of these antennae (≃45 Chl/P700) are associated with polypeptides of 21,500 to 24,500 daltons. The present study utilizes two developmental systems to verify this association. Chloroplasts were isolated from a Chl b-less barley mutant and from partially-developed cucumber cotyledons (greened under intermittent illumination [ImL] chloroplasts) and were compared to control chloroplasts isolated from wild-type barley and mature cucumber. Both the mutant and ImL chloroplasts exhibited a long wavelength fluorescence maximum at 724 nanometers at 77 K as compared to 735 to 738 nanometers emission maximum in the respective controls. Both the mutant and ImL chloroplasts were deficient in polypeptides of 21,500 to 24,500 daltons which were present in control membranes and in PSI fractions isolated from control membranes. In light-induced maturation of the ImL cucumbers, the synthesis of polypeptides in the 21,500 to 24,500 molecular weight range paralleled the appearance of PSI Chl species fluorescing at long wavelength (≃735 nm). The PSI spectral properties of the control membranes were retained in isolated PSI particles containing 100 to 120 Chl/P700 (PSI-110). Detergent extraction of PSI-110 removed polypeptides of 21,500 to 24,500 daltons plus ≃ 45 Chl/P700. The antennae-depleted PSI particle mimics PSI properties exhibited by incompletely differentiated mutant or ImL chloroplasts. Images PMID:16661289

Optimizing an estuarine water quality monitoring program through an entropy-based hierarchical spatiotemporal Bayesian framework

NASA Astrophysics Data System (ADS)

Alameddine, Ibrahim; Karmakar, Subhankar; Qian, Song S.; Paerl, Hans W.; Reckhow, Kenneth H.

2013-10-01

The total maximum daily load program aims to monitor more than 40,000 standard violations in around 20,000 impaired water bodies across the United States. Given resource limitations, future monitoring efforts have to be hedged against the uncertainties in the monitored system, while taking into account existing knowledge. In that respect, we have developed a hierarchical spatiotemporal Bayesian model that can be used to optimize an existing monitoring network by retaining stations that provide the maximum amount of information, while identifying locations that would benefit from the addition of new stations. The model assumes the water quality parameters are adequately described by a joint matrix normal distribution. The adopted approach allows for a reduction in redundancies, while emphasizing information richness rather than data richness. The developed approach incorporates the concept of entropy to account for the associated uncertainties. Three different entropy-based criteria are adopted: total system entropy, chlorophyll-a standard violation entropy, and dissolved oxygen standard violation entropy. A multiple attribute decision making framework is adopted to integrate the competing design criteria and to generate a single optimal design. The approach is implemented on the water quality monitoring system of the Neuse River Estuary in North Carolina, USA. The model results indicate that the high priority monitoring areas identified by the total system entropy and the dissolved oxygen violation entropy criteria are largely coincident. The monitoring design based on the chlorophyll-a standard violation entropy proved to be less informative, given the low probabilities of violating the water quality standard in the estuary.

Chlorophyll Breakdown in Senescent Banana Leaves: Catabolism Reprogrammed for Biosynthesis of Persistent Blue Fluorescent Tetrapyrroles

PubMed Central

Vergeiner, Clemens; Banala, Srinivas; Kräutler, Bernhard

2013-01-01

Chlorophyll breakdown is a visual phenomenon of leaf senescence and fruit ripening. It leads to the formation of colorless chlorophyll catabolites, a group of (chlorophyll-derived bilin-type) linear tetrapyrroles. Here, analysis and structure elucidation of the chlorophyll breakdown products in leaves of banana (Musa acuminata) is reported. In senescent leaves of this monocot all chlorophyll catabolites identified were hypermodified fluorescent chlorophyll catabolites (hmFCCs). Surprisingly, nonfluorescent chlorophyll catabolites (NCCs) were not found, the often abundant and apparently typical final chlorophyll breakdown products in senescent leaves. As a rule, FCCs exist only fleetingly, and they isomerize rapidly to NCCs in the senescent plant cell. Amazingly, in the leaves of banana plants, persistent hmFCCs were identified that accounted for about 80 % of the chlorophyll broken down, and yellow leaves of M. acuminata display a strong blue luminescence. The structures of eight hmFCCs from banana leaves were analyzed by spectroscopic means. The massive accumulation of the hmFCCs in banana leaves, and their functional group characteristics, indicate a chlorophyll breakdown path, the downstream transformations of which are entirely reprogrammed towards the generation of persistent and blue fluorescent FCCs. As expressed earlier in related studies, the present findings call for attention, as to still elusive biological roles of these linear tetrapyrroles. PMID:23946204

Quantum dots as contrast agents for endoscopy: mathematical modeling and experimental validation of the optimal excitation wavelength

NASA Astrophysics Data System (ADS)

Roy, Mathieu; DaCosta, Ralph S.; Weersink, Robert; Netchev, George; Davidson, Sean R. H.; Chan, Warren; Wilson, Brian C.

2007-02-01

Our group is investigating the use of ZnS-capped CdSe quantum dot (QD) bioconjugates combined with fluorescence endoscopy for improved early cancer detection in the esophagus, colon and lung. A major challenge in using fluorescent contrast agents in vivo is to extract the relevant signal from the tissue autofluorescence (AF). Our studies are aimed at maximizing the QD signal to AF background ratio (SBR) to facilitate detection. This work quantitatively evaluates the effect of the excitation wavelength on the SBR, using both experimental measurements and mathematical modeling. Experimental SBR measurements were done by imaging QD solutions placed onto (surface) or embedded in (sub-surface) ex vivo murine tissue samples (brain, kidney, liver, lung), using a polymethylmethacrylate (PMMA) microchannel phantom. The results suggest that the maximum contrast is reached when the excitation wavelength is set at 400+/-20 μm for the surface configuration. For the sub-surface configuration, the optimal excitation wavelength varies with the tissue type and QD emission wavelengths. Our mathematical model, based on an approximation to the diffusion equation, successfully predicts the optimal excitation wavelength for the surface configuration, but needs further modifications to be accurate in the sub-surface configuration.

Numerical Study of Mechanical Response of Pure Titanium during Shot Peening

NASA Astrophysics Data System (ADS)

Wang, Y. M.; Cheng, J. P.; Yang, H. P.; Zhang, C. H.

2018-05-01

Mechanical response of pure titanium impacted by a steel ball was simulated using finite element method to investigate stress and strain evolution during shot peening. It is indicated that biaxial residual stress was obtained in the surface layer while in the interior triaxial residual stress existed because the S33 was comparable to S11 and S22. With decreasing the depth from the top surface, the stress was higher during impacting, but the stress relief extent became more significant when the ball rebounded. Therefore the maximum residual stress was formed in the subsurface layer with depth of 130 μm. As for the residual strain, it is shown that the maximum residual strain LE33 was obtained at the depth of 60 μm corresponding to the maximum shear stress during impacting.

The role of chlorophyll b in photosynthesis: Hypothesis

PubMed Central

Eggink, Laura L; Park, Hyoungshin; Hoober, J Kenneth

2001-01-01

Background The physico-chemical properties of chlorophylls b and c have been known for decades. Yet the mechanisms by which these secondary chlorophylls support assembly and accumulation of light-harvesting complexes in vivo have not been resolved. Presentation Biosynthetic modifications that introduce electronegative groups on the periphery of the chlorophyll molecule withdraw electrons from the pyrrole nitrogens and thus reduce their basicity. Consequently, the tendency of the central Mg to form coordination bonds with electron pairs in exogenous ligands, a reflection of its Lewis acid properties, is increased. Our hypothesis states that the stronger coordination bonds between the Mg atom in chlorophyll b and chlorophyll c and amino acid sidechain ligands in chlorophyll a/b- and a/c-binding apoproteins, respectively, enhance their import into the chloroplast and assembly of light-harvesting complexes. Testing Several apoproteins of light-harvesting complexes, in particular, the major protein Lhcb1, are not detectable in leaves of chlorophyll b-less plants. A direct test of the hypothesis – with positive selection – is expression, in mutant plants that synthesize only chlorophyll a, of forms of Lhcb1 in which weak ligands are replaced with stronger Lewis bases. Implications The mechanistic explanation for the effects of deficiencies in chlorophyll b or c points to the need for further research on manipulation of coordination bonds between these chlorophylls and chlorophyll-binding proteins. Understanding these interactions will possibly lead to engineering plants to expand their light-harvesting antenna and ultimately their productivity. PMID:11710960

[Vegetation index estimation by chlorophyll content of grassland based on spectral analysis].

PubMed

Xiao, Han; Chen, Xiu-Wan; Yang, Zhen-Yu; Li, Huai-Yu; Zhu, Han

2014-11-01

Comparing the methods of existing remote sensing research on the estimation of chlorophyll content, the present paper confirms that the vegetation index is one of the most practical and popular research methods. In recent years, the increasingly serious problem of grassland degradation. This paper, firstly, analyzes the measured reflectance spectral curve and its first derivative curve in the grasslands of Songpan, Sichuan and Gongger, Inner Mongolia, conducts correlation analysis between these two spectral curves and chlorophyll content, and finds out the regulation between REP (red edge position) and grassland chlorophyll content, that is, the higher the chlorophyll content is, the higher the REIP (red-edge inflection point) value would be. Then, this paper constructs GCI (grassland chlorophyll index) and selects the most suitable band for retrieval. Finally, this paper calculates the GCI by the use of satellite hyperspectral image, conducts the verification and accuracy analysis of the calculation results compared with chlorophyll content data collected from field of twice experiments. The result shows that for grassland chlorophyll content, GCI has stronger sensitivity than other indices of chlorophyll, and has higher estimation accuracy. GCI is the first proposed to estimate the grassland chlorophyll content, and has wide application potential for the remote sensing retrieval of grassland chlorophyll content. In addition, the grassland chlorophyll content estimation method based on remote sensing retrieval in this paper provides new research ideas for other vegetation biochemical parameters' estimation, vegetation growth status' evaluation and grassland ecological environment change's monitoring.

Biological Cr(VI) removal using bio-filters and constructed wetlands.

PubMed

Michailides, Michail K; Sultana, Mar-Yam; Tekerlekopoulou, Athanasia G; Akratos, Christos S; Vayenas, Dimitrios V

2013-01-01

The bioreduction of hexavalent chromium from aqueous solution was carried out using suspended growth and packed-bed reactors under a draw-fill operating mode, and horizontal subsurface constructed wetlands. Reactors were inoculated with industrial sludge from the Hellenic Aerospace Industry using sugar as substrate. In the suspended growth reactors, the maximum Cr(VI) reduction rate (about 2 mg/L h) was achieved for an initial concentration of 12.85 mg/L, while in the attached growth reactors, a similar reduction rate was achieved even with high initial concentrations (109 mg/L), thus confirming the advantage of these systems. Two horizontal subsurface constructed wetlands (CWs) pilot-scale units were also built and operated. The units contained fine gravel. One unit was planted with common reeds and one was kept unplanted. The mean influent concentrations of Cr(VI) were 5.61 and 5.47 mg/L for the planted and unplanted units, respectively. The performance of the planted CW units was very effective as mean Cr(VI) removal efficiency was 85% and efficiency maximum reached 100%. On the contrary, the unplanted CW achieved very low Cr(VI) removal with a mean value of 26%. Both attached growth reactors and CWs proved efficient and viable means for Cr(VI) reduction.

Exchange of Groundwater and Surface-Water Mediated by Permafrost Response to Seasonal and Long Term Air Temperature Variation

USGS Publications Warehouse

Ge, Shemin; McKenzie, Jeffrey; Voss, Clifford; Wu, Qingbai

2011-01-01

Permafrost dynamics impact hydrologic cycle processes by promoting or impeding groundwater and surface water exchange. Under seasonal and decadal air temperature variations, permafrost temperature changes control the exchanges between groundwater and surface water. A coupled heat transport and groundwater flow model, SUTRA, was modified to simulate groundwater flow and heat transport in the subsurface containing permafrost. The northern central Tibet Plateau was used as an example of model application. Modeling results show that in a yearly cycle, groundwater flow occurs in the active layer from May to October. Maximum groundwater discharge to the surface lags the maximum subsurface temperature by two months. Under an increasing air temperature scenario of 3?C per 100 years, over the initial 40-year period, the active layer thickness can increase by three-fold. Annual groundwater discharge to the surface can experience a similar three-fold increase in the same period. An implication of these modeling results is that with increased warming there will be more groundwater flow in the active layer and therefore increased groundwater discharge to rivers. However, this finding only holds if sufficient upgradient water is available to replenish the increased discharge. Otherwise, there will be an overall lowering of the water table in the recharge portion of the catchment.

Subtropical Gyre Variability Observed by Ocean Color Satellites

NASA Technical Reports Server (NTRS)

McClain, Charles R.; Signorini, Sergio R.; Christian, James R.

2002-01-01

The subtropical gyres of the world are extensive, coherent regions that occupy about 40% of the surface of the earth. Once thought to be homogeneous and static habitats, there is increasing evidence that mid-latitude gyres exhibit substantial physical and biological variability on a variety of time scales. While biological productivity within these oligotrophic regions may be relatively small, their immense size makes their total contribution significant. Global distributions of dynamic height derived from satellite altimeter data, and chlorophyll concentration derived from satellite ocean color data, show that the dynamic center of the gyres, the region of maximum dynamic height where the thermocline is deepest, does not coincide with the region of minimum chlorophyll concentration. The physical and biological processes by which this distribution of ocean properties is maintained, and the spatial and temporal scales of variability associated with these processes, are analyzed using global surface chlorophyll-a concentrations, sea surface height, sea surface temperature and surface winds from operational satellite and meteorological sources, and hydrographic data from climatologies and individual surveys. Seasonal and interannual variability in the areal extent of the subtropical gyres are examined using 8 months (November 1996 - June 1997) of OCTS and nearly 5 years (September 1997 - June 02) of SeaWiFS ocean color data and are interpreted in the context of climate variability and measured changes in other ocean properties (i.e., wind forcing, surface currents, Ekman pumping, and vertical mixing). The North Pacific and North Atlantic gyres are observed to be shrinking over this period, while the South Pacific, South Atlantic, and South Indian Ocean gyres appear to be expanding.

Allocation of Secondary Metabolites, Photosynthetic Capacity, and Antioxidant Activity of Kacip Fatimah (Labisia pumila Benth) in Response to CO2 and Light Intensity

PubMed Central

Jaafar, Hawa Z. E.; Karimi, Ehsan; Ghasemzadeh, Ali

2014-01-01

A split plot 3 by 4 experiment was designed to investigate and distinguish the relationships among production of secondary metabolites, soluble sugar, phenylalanine ammonia lyase (PAL; EC 4.3.1.5) activity, leaf gas exchange, chlorophyll content, antioxidant activity (DPPH), and lipid peroxidation under three levels of CO2 (400, 800, and 1200 μmol/mol) and four levels of light intensity (225, 500, 625, and 900 μmol/m2/s) over 15 weeks in Labisia pumila. The production of plant secondary metabolites, sugar, chlorophyll content, antioxidant activity, and malondialdehyde content was influenced by the interactions between CO2 and irradiance. The highest accumulation of secondary metabolites, sugar, maliondialdehyde, and DPPH activity was observed under CO2 at 1200 μmol/mol + light intensity at 225 μmol/m2/s. Meanwhile, at 400 μmol/mol CO2 + 900 μmol/m2/s light intensity the production of chlorophyll and maliondialdehyde content was the highest. As CO2 levels increased from 400 to 1200 μmol/mol the photosynthesis, stomatal conductance, f v/f m (maximum efficiency of photosystem II), and PAL activity were enhanced. The production of secondary metabolites displayed a significant negative relationship with maliondialdehyde indicating lowered oxidative stress under high CO2 and low irradiance improved the production of plant secondary metabolites that simultaneously enhanced the antioxidant activity (DPPH), thus improving the medicinal value of Labisia pumila under this condition. PMID:24683336

Pigment production in Spirulina fussiformis in different photophysical conditions.

PubMed

Madhyastha, H K; Vatsala, T M

2007-09-01

The present investigation makes a comparative investigation of individual light source on the different commercially important pigments in Spirulina fussiformis in photobioreactor culture condition. Continuous culture system was carried out throughout the experimental condition. Initially, seed culture, corresponding to 0.2 g/L on dry weight basis was cultivated in Zarrouks medium with different colored light source in reactor. Maximum daily biomass productivity, 0.8 g/L, 0.75 g/L and 0.69 g/L in white light (WL), blue light (BL) and green light (GL), respectively, conditions was noticed. Pigment content during WL treatment showed the highest accumulation (5.5 microg/mL) of chlorophyll whereas, other pigments roughly remained constant without much change, implying WL intensity is better for chlorophyll synthesis. On the other hand, chlorophyll and phycocyanin content gradually increased up to 7 microg/mL and 2 mg/mL, respectively, at BL intensity. The response to GL was negative to all pigments studied except for phycocyanin; in this case a highest production (2.5 mg/mL) was seen during 18 days experimental period. Additionally, when yellow light (YL) treatment experiments were conducted, the rate of production gradually decreased from 6th day onward in all pigments demonstrating the photobleaching effect of YL. The average rate of pigments production did not show significant accumulation in red light (RL) light treatment except phycoerythrin which showed an increasing trend of production. It is worth to mention here that higher light intensity is better for production of phycocyanin and phycoerythrin in Spirulina.

The deep chlorophyll layer in Lake Ontario: Extent, mechanisms of formation, and abiotic predictors

USGS Publications Warehouse

Scofield, Anne E.; Watkins, James M.; Weidel, Brian C.; Luckey, Frederick J.; Rudstam, Lars G.

2017-01-01

Epilimnetic production has declined in Lake Ontario, but increased production in metalimnetic deep chlorophyll layers (DCLs) may compensate for these losses. We investigated the spatial and temporal extent of DCLs, the mechanisms driving DCL formation, and the use of physical variables for predicting the depth and concentration of the deep chlorophyll maximum (DCM) during April–September 2013. A DCL with DCM concentrations 2 to 3 times greater than those in the epilimnion was present when the euphotic depth extended below the epilimnion, which occurred primarily from late June through mid-August. In situ growth was important for DCL formation in June and July, but settling and photoadaptation likely also contributed to the later-season DCL. Supporting evidence includes: phytoplankton biovolume was 2.4 × greater in the DCL than in the epilimnion during July, the DCL phytoplankton community of July was different from that of May and the July epilimnion (p = 0.004), and there were concurrences of DCM with maxima in fine particle concentration and dissolved oxygen saturation. Higher nutrient levels in the metalimnion may also be a necessary condition for DCL formation because July metalimnetic concentrations were 1.5 × (nitrate) and 3.5 × (silica) greater than in the epilimnion. Thermal structure variables including epilimnion depth, thermocline depth, and thermocline steepness were useful for predicting DCM depth; the inclusion of euphotic depth only marginally improved these predictions. However, euphotic depth was critical for predicting DCM concentrations. The DCL is a productive and predictable feature of the Lake Ontario ecosystem during the stratified period.

Surface and mid-water sources of organic carbon by photoautotrophic and chemoautotrophic production in the Black Sea

NASA Astrophysics Data System (ADS)

Yılmaz, Ayşen; Çoban-Yıldız, Yeşim; Telli-Karakoç, Fatma; Bologa, Alexandru

2006-08-01

The multilayered surface waters of the Black Sea contain aerobic, suboxic and anoxic layers that support both photoautotrophic (PP) and chemoautotrophic (ChP) biological production. During the R/V Knorr cruise in May-June 2001, phytoplankton biomass (represented as chlorophyll- a), photoautotrophic and chemoautotrophic production (ChP) rates were determined in the western Black Sea. Integrated chlorophyll- a concentrations in the euphotic zone were as low as 2.2 mg m -2 in the central gyre, while they were as high as 19.9 mg m -2 in the NW shelf region. Integrated photoautotrophic production rates ranged from 112 to 355 mg C m -2 d -1. The lowest values were determined in the central gyre and the highest values were found at the shelf-break station near the Bosphorus, the NW shelf/shelf-break area and in the Sevastopol eddy. Primary production and chlorophyll- a data revealed that post-bloom conditions existed during this sampling period. Bioassay experiments showed that under optimum light conditions, photoautotrophic production was nitrogen-limited. ChP increased in the redox transition zone and coincided with the lower boundary of the fine particle layer. The maximum values were shallower (at σθ=16.25) in the central gyre and deeper (at σθ=16.5) in the shelf-break region near Sakarya Canyon. Integrated ChP rates were 63 and 1930 mg C m -2 d -1, which were equivalent to 30% and 89% of the overall water-column production for the central gyre and Sakarya Canyon regions, respectively.

On the relationship between satellite-retrieved surface temperature fronts and chlorophyll a in the western South Atlantic

NASA Astrophysics Data System (ADS)

Saraceno, Martin; Provost, Christine; Piola, Alberto R.

2005-11-01

The time-space distribution of chlorophyll a in the southwestern Atlantic is examined using 6 years (1998-2003) of sea surface color images from Sea-viewing Wide Field of View Sensor (SeaWiFS). Chlorophyll a (chl a) distribution is confronted with sea surface temperature (SST) fronts retrieved from satellite imagery. Histogram analysis of the color, SST, and SST gradient data sets provides a simple procedure for pixel classification from which eight biophysical regions in the SWA are identified, including three new regions with regard to Longhurst (1998) work: Patagonian Shelf Break (PSB), Brazil Current Overshoot, and Zapiola Rise region. In the PSB region, coastal-trapped waves are suggested as a possible mechanism leading to the intraseasonal frequencies observed in SST and chl a. Mesoscale activity associated with the Brazil Current Front and, in particular, eddies drifting southward is probably responsible for the high chl a values observed throughout the Brazil Current Overshoot region. The Zapiola Rise is characterized by a local minimum in SST gradient magnitudes and shows chl a maximum values in February, 3 months later than the austral spring bloom of the surroundings. Significant interannual variability is present in the color imagery. In the PSB, springs and summers with high chl a concentrations seem associated with stronger local northerly wind speed, and possible mechanisms are discussed. Finally, the Brazil-Malvinas front is detected using both SST gradient and SeaWiFS images. The time-averaged position of the front at 54.2°W is estimated at 38.9°S and its alongshore migration of about 300 km.

Preliminary study of internal wave effects to chlorophyll distribution in the Lombok Strait and adjacent areas

NASA Astrophysics Data System (ADS)

Arvelyna, Yessy; Oshima, Masaki

2005-01-01

This paper studies the effect of internal wave in the Lombok Strait to chlorophyll distribution in the surrounded areas using ERS SAR, ASTER, SeaWiFS and AVHRR-NOAA images data during 1996-2004 periods. The observation results shows that the internal waves were propagated to the south and the north of strait and mostly occurred during transitional season from dry to wet and wet season (rainy season) between September to December when the layers are strongly stratified. Wavelet transform of image using Meyer wavelet analysis is applied for internal wave detection in ERS SAR and ASTER images, for symmetric extension of data at the image boundaries, to prevent discontinuities by a periodic wrapping of data in fast algorithm and space-saving code. Internal wave created elongated pattern in detail and approximation of image from level 2 to 5 and retained value between 2-4.59 times compared to sea surface, provided accuracy in classification over than 80%. In segmentation process, the Canny edge detector is applied on the approximation image at level two to derive internal wave signature in image. The proposed method can extract the internal wave signature, maintain the continuity of crest line while reduce small strikes from noise. The segmentation result, i.e. the length between crest and trough, is used to compute the internal wave induced current using Korteweg-de Vries (KdV) equation. On ERS SAR data contains surface signature of internal wave (2001/8/20), we calculated that internal wave propagation speed was 1.2 m/s and internal wave induced current was 0.56 m/s, respectively. From the observation of ERS SAR and SeaWiFS images data, we found out that the distribution of maximum chlorophyll area at southern coastline off Bali Island when strong internal wave induced current occurred in south of the Lombok Strait was distributed further to westward, i.e. from 9.25°-10.25°LS, 115°-116.25°SE to 8.8°-10.7°LS, 114.5°-116°SE, and surface chlorophyll concentration near coastal area, i.e. area 8.8°-9.25° LS, 114.5°-115°SE, increased. The preliminary result of this study concludes that the internal waves presumably affect chlorophyll distribution to westward (from 9.25°-10.25°LS, 115°-116.25°SE to 8.8°-10.7°LS, 114.5°-116°SE) in the south coast off Bali Island and increase surface chlorophyll concentration near coastal area (8.8°-9.25° LS, 114.5°-115°SE).

Temperature and pressure adaptation of a sulfate reducer from the deep subsurface

PubMed Central

Fichtel, Katja; Logemann, Jörn; Fichtel, Jörg; Rullkötter, Jürgen; Cypionka, Heribert; Engelen, Bert

2015-01-01

Microbial life in deep marine subsurface faces increasing temperatures and hydrostatic pressure with depth. In this study, we have examined growth characteristics and temperature-related adaptation of the Desulfovibrio indonesiensis strain P23 to the in situ pressure of 30 MPa. The strain originates from the deep subsurface of the eastern flank of the Juan de Fuca Ridge (IODP Site U1301). The organism was isolated at 20°C and atmospheric pressure from ~61°C-warm sediments approximately 5 m above the sediment–basement interface. In comparison to standard laboratory conditions (20°C and 0.1 MPa), faster growth was recorded when incubated at in situ pressure and high temperature (45°C), while cell filamentation was induced by further compression. The maximum growth temperature shifted from 48°C at atmospheric pressure to 50°C under high-pressure conditions. Complementary cellular lipid analyses revealed a two-step response of membrane viscosity to increasing temperature with an exchange of unsaturated by saturated fatty acids and subsequent change from branched to unbranched alkyl moieties. While temperature had a stronger effect on the degree of fatty acid saturation and restructuring of main phospholipids, pressure mainly affected branching and length of side chains. The simultaneous decrease of temperature and pressure to ambient laboratory conditions allowed the cultivation of our moderately thermophilic strain. This may in turn be one key to a successful isolation of microorganisms from the deep subsurface adapted to high temperature and pressure. PMID:26500624

Chlorophyll metabolism in pollinated vs. parthenocarpic fig fruits throughout development and ripening.

PubMed

Rosianskey, Yogev; Dahan, Yardena; Yadav, Sharawan; Freiman, Zohar E; Milo-Cochavi, Shira; Kerem, Zohar; Eyal, Yoram; Flaishman, Moshe A

2016-08-01

Expression of 13 genes encoding chlorophyll biosynthesis and degradation was evaluated. Chlorophyll degradation was differentially regulated in pollinated and parthenocarpic fig fruits, leading to earlier chlorophyll degradation in parthenocarpic fruits. Varieties of the common fig typically yield a commercial summer crop that requires no pollination, although it can be pollinated. Fig fruit pollination results in larger fruit size, greener skin and darker interior inflorescence color, and slows the ripening process compared to non-pollinated fruits. We evaluated the effect of pollination on chlorophyll content and levels of transcripts encoding enzymes of the chlorophyll metabolism in fruits of the common fig 'Brown Turkey'. We cloned and evaluated the expression of 13 different genes. All 13 genes showed high expression in the fruit skin, inflorescences and leaves, but extremely low expression in roots. Pollination delayed chlorophyll breakdown in the ripening fruit skin and inflorescences. This was correlated with the expression of genes encoding enzymes in the chlorophyll biosynthesis and degradation pathways. Expression of pheophorbide a oxygenase (PAO) was strongly negatively correlated with chlorophyll levels during ripening in pollinated fruits; along with its high expression levels in yellow leaves, this supports a pivotal role for PAO in chlorophyll degradation in figs. Normalizing expression levels of all chlorophyll metabolism genes in the pollinated and parthenocarpic fruit skin and inflorescences showed three synthesis (FcGluTR1, FcGluTR2 and FcCLS1) and three degradation (FcCLH1, FcCLH2 and FcRCCR1) genes with different temporal expression in the pollinated vs. parthenocarpic fruit skin and inflorescences. FcCAO also showed different expressions in the parthenocarpic fruit skin. Thus, chlorophyll degradation is differentially regulated in the pollinated and parthenocarpic fruit skin and inflorescences, leading to earlier and more sustained chlorophyll degradation in the parthenocarpic fruit.

Biosynthesis of Chlorophyll a in a Purple Bacterial Phototroph and Assembly into a Plant Chlorophyll-Protein Complex.

PubMed

Hitchcock, Andrew; Jackson, Philip J; Chidgey, Jack W; Dickman, Mark J; Hunter, C Neil; Canniffe, Daniel P

2016-09-16

Improvements to photosynthetic efficiency could be achieved by manipulating pigment biosynthetic pathways of photosynthetic organisms in order to increase the spectral coverage for light absorption. The development of organisms that can produce both bacteriochlorophylls and chlorophylls is one way to achieve this aim, and accordingly we have engineered the bacteriochlorophyll-utilizing anoxygenic phototroph Rhodobacter sphaeroides to make chlorophyll a. Bacteriochlorophyll and chlorophyll share a common biosynthetic pathway up to the precursor chlorophyllide. Deletion of genes responsible for the bacteriochlorophyll-specific modifications of chlorophyllide and replacement of the native bacteriochlorophyll synthase with a cyanobacterial chlorophyll synthase resulted in the production of chlorophyll a. This pigment could be assembled in vivo into the plant water-soluble chlorophyll protein, heterologously produced in Rhodobacter sphaeroides, which represents a proof-of-principle for the engineering of novel antenna complexes that enhance the spectral range of photosynthesis.

Pulse amplitude modulated chlorophyll fluorometer

DOEpatents

Greenbaum, Elias; Wu, Jie

2015-12-29

Chlorophyll fluorometry may be used for detecting toxins in a sample because of changes in micro algae. A portable lab on a chip ("LOAC") based chlorophyll fluorometer may be used for toxin detection and environmental monitoring. In particular, the system may include a microfluidic pulse amplitude modulated ("PAM") chlorophyll fluorometer. The LOAC PAM chlorophyll fluorometer may analyze microalgae and cyanobacteria that grow naturally in source drinking water.

Revisiting chlorophyll extraction methods in biological soil crusts - methodology for determination of chlorophyll a and chlorophyll a + b as compared to previous methods

NASA Astrophysics Data System (ADS)

Caesar, Jennifer; Tamm, Alexandra; Ruckteschler, Nina; Lena Leifke, Anna; Weber, Bettina

2018-03-01

Chlorophyll concentrations of biological soil crust (biocrust) samples are commonly determined to quantify the relevance of photosynthetically active organisms within these surface soil communities. Whereas chlorophyll extraction methods for freshwater algae and leaf tissues of vascular plants are well established, there is still some uncertainty regarding the optimal extraction method for biocrusts, where organism composition is highly variable and samples comprise major amounts of soil. In this study we analyzed the efficiency of two different chlorophyll extraction solvents, the effect of grinding the soil samples prior to the extraction procedure, and the impact of shaking as an intermediate step during extraction. The analyses were conducted on four different types of biocrusts. Our results show that for all biocrust types chlorophyll contents obtained with ethanol were significantly lower than those obtained using dimethyl sulfoxide (DMSO) as a solvent. Grinding of biocrust samples prior to analysis caused a highly significant decrease in chlorophyll content for green algal lichen- and cyanolichen-dominated biocrusts, and a tendency towards lower values for moss- and algae-dominated biocrusts. Shaking of the samples after each extraction step had a significant positive effect on the chlorophyll content of green algal lichen- and cyanolichen-dominated biocrusts. Based on our results we confirm a DMSO-based chlorophyll extraction method without grinding pretreatment and suggest the addition of an intermediate shaking step for complete chlorophyll extraction (see Supplement S6 for detailed manual). Determination of a universal chlorophyll extraction method for biocrusts is essential for the inter-comparability of publications conducted across all continents.

Characteristic sediment and water column chlorophyll-a in the sea cucumber’s Paracaudina sp. habitat on the Kenjeran Water, Surabaya

NASA Astrophysics Data System (ADS)

Widianingsih, W.; Zaenuri, M.; Anggoro, S.; Kusumaningrum, H. P.; Hartati, R.

2018-03-01

The study of characteristic sediment and water column chlorophyll-a has an important role in the sea cucumber habitat. Sediment chlorophyll-a represents a productivity primer for the benthic community. This research has a purpose to investigate characteristic sediment and water column chlorophyll-a on the Kenjeran water, Surabaya. Sediment samples were collected by the ekman grab for analysis, grain size and nutrient. The sample for sediment chlorophyll-a was taken by core sampler. The water samples were taken with Nansen Bottles. According to the research result, the values of sediment chlorophyll-a at station 10, 11 and 12 were higher than the other stations. In contrast, the value of chlorophyll-a in the column water had almost the same value for each station. The sediment chlorophyll-a value on clay and silt sediment type was higher than the fine sand and coarse sediment type. The suitable habitat characteristic for Paracaudina sp. was clay and silt sediment with sediment chlorophyll concentration ranging from 347.82 mg·m-2 to 1135.52 mg·m-2.

AVIRIS spectra of California wetlands

NASA Technical Reports Server (NTRS)

Gross, Michael F.; Ustin, Susan L.; Klemas, Vytautas

1988-01-01

Spectral data gathered by the AVIRIS from wetlands in the Suisun Bay area of California on 13 October 1987 were analyzed. Spectra representing stands of numerous vegetation types (including Sesuvium verrucosum, Scirpus acutus and Scirpus californicus, Xanthium strumarium, Cynadon dactylon, and Distichlis spicata) and soil were isolated. Despite some defects in the data, it was possible to detect vegetation features such as differences in the location of the chlorophyll red absorption maximum. Also, differences in cover type spectra were evident in other spectral regions. It was not possible to determine if the observed features represent noise, variability in canopy architecture, or chemical constituents of leaves.

Mechanisms behind the estimation of photosynthesis traits from leaf reflectance observations

NASA Astrophysics Data System (ADS)

Dechant, Benjamin; Cuntz, Matthias; Doktor, Daniel; Vohland, Michael

2016-04-01

Many studies have investigated the reflectance-based estimation of leaf chlorophyll, water and dry matter contents of plants. Only few studies focused on photosynthesis traits, however. The maximum potential uptake of carbon dioxide under given environmental conditions is determined mainly by RuBisCO activity, limiting carboxylation, or the speed of photosynthetic electron transport. These two main limitations are represented by the maximum carboxylation capacity, V cmax,25, and the maximum electron transport rate, Jmax,25. These traits were estimated from leaf reflectance before but the mechanisms underlying the estimation remain rather speculative. The aim of this study was therefore to reveal the mechanisms behind reflectance-based estimation of V cmax,25 and Jmax,25. Leaf reflectance, photosynthetic response curves as well as nitrogen content per area, Narea, and leaf mass per area, LMA, were measured on 37 deciduous tree species. V cmax,25 and Jmax,25 were determined from the response curves. Partial Least Squares (PLS) regression models for the two photosynthesis traits V cmax,25 and Jmax,25 as well as Narea and LMA were studied using a cross-validation approach. Analyses of linear regression models based on Narea and other leaf traits estimated via PROSPECT inversion, PLS regression coefficients and model residuals were conducted in order to reveal the mechanisms behind the reflectance-based estimation. We found that V cmax,25 and Jmax,25 can be estimated from leaf reflectance with good to moderate accuracy for a large number of species and different light conditions. The dominant mechanism behind the estimations was the strong relationship between photosynthesis traits and leaf nitrogen content. This was concluded from very strong relationships between PLS regression coefficients, the model residuals as well as the prediction performance of Narea- based linear regression models compared to PLS regression models. While the PLS regression model for V cmax,25 was fully based on the correlation to Narea, the PLS regression model for Jmax,25 was not entirely based on it. Analyses of the contributions of different parts of the reflectance spectrum revealed that the information contributing to the Jmax,25 PLS regression model in addition to the main source of information, Narea, was mainly located in the visible part of the spectrum (500-900 nm). Estimated chlorophyll content could be excluded as potential source of this extra information. The PLS regression coefficients of the Jmax,25 model indicated possible contributions from chlorophyll fluorescence and cytochrome f content. In summary, we found that the main mechanism behind the estimation of V cmax,25 and Jmax,25 from leaf reflectance observations is the correlation to Narea but that there is additional information related to Jmax,25 mainly in the visible part of the spectrum.

Harnessing Solar Energy Using Photosynthetic and Organic Pigments

NASA Astrophysics Data System (ADS)

Fitzsimons, Toby Ryan

Fossil fuels are a finite energy resource that must be supplemented or replaced by more stable forms of electrical energy. Solar technology research strives to supplement and provide eventual replacement for fossil fuel technology. This experiment focused on the use of natural pigments as photo-sensitizers in the current generation of solar cells called dye sensitized solar cells (DSSCs). Pigments from purified chlorophyll a, chlorophyll b, chlorophyll a/b, crude spinach (Spinacia oleracea) extract, phycocyanin, and chlorophyllin were used to construct DSSCs and evaluated, along with a control containing no pigment, for solar energy conversion. The anode of the solar cells consisted of titanium dioxide (TiO2) plates soaked in pigment solutions for twenty-four hours. The plates were assembled, along with an electrolyte sandwiched between cells, and a platinum-coated counter plate that functioned as the cathode. A gasket seal was placed between the plates and held together with rubber bands. The DSSCs were each tested for a maximum power (Pmax) point and a resistor was selected that corresponded to the resistance at that point. The cells were randomly placed into a power block assembly located in an environmental chamber with lighting that provided an average of 27,590 lumens at the surface of DSSCs. With appropriate resistors in place, the cells were subjected to twelve-hour days and twelve-hour nights for ten days, and measurements were recorded every ten minutes. Data were collected to obtain values for voltage in millivolts (mV), current in microamps (microA), and power in microwatts (microW), as well as beginning and ending efficiencies in converting light to usable energy. Voltages were substantially higher during the day than at night for all pigments, except for the control, indicating that the pigments functioned as DSSCs. Hence, only daytime values were used for data analysis. Voltage during the ten-day experiment ranged from 3.99 to 274 mV; current ranged from 0.0180 to 41.9 microA, and power ranged from 0.00 to 11.3 microW. Chlorophyllin had the highest peak and least voltage (274 and 161 mV), highest peak and least current (41.9 and 21.8 microA), and highest peak and least power (11.3 and 4.84 microW). The ranking of the pigments for peak voltage was: Chlorophyllin = Crude Extract ≥ Chlorophyll a = Chlorophyll a/b ≥ Phycocyanin = Chlorophyll b > Control. The ranking for least voltage was: Chlorophyllin > Phycocyanin ≥ Chlorophyll a/b ≥ Crude Extract ≥ Chlorophyll b ≥ Chlorophyll a ≥ Control. Ranking for peak and least values were similar for current and power. Solar energy conversion (efficiency in converting light energy to usable energy in watts per square meter) for all treatments ranged from 0.000595 to 0.0217% at the beginning of the experiment, and was highest in cells constructed with chlorophyllin. Based on rankings from peak and ending voltage values, as well as other measurements, it was concluded that DSSCs constructed with chlorophyllin performed the best and lasted the longest as photo-sensitizers, compared to other pigments used in this investigation. The DSSCs constructed with crude extract performed almost as well as those constructed with chlorophyllin at the beginning of the experiment, but degradation of this naturally-made pigment may have prevented these cells from sustaining solar energy conversion for more than a few days. Other pigments demonstrated conversion values higher than those of control DSSCs which contained no pigments. The results from this project provide evidence that DSSCs can produce useable energy. More research is needed to enhance and prolong the efficiency of DSSCs in solar energy conversion.

Rethinking Chlorophyll Responses To Stress: Fluorescence and Flectance Remote Sensing in a Coastal Environment

DTIC Science & Technology

2010-11-15

fluorescence emission of vegetation for mapping vegetation stress as chlorophyll content and/or carotenoid content changes. 1. REPORT DATE (DD-MM-YYYY...that estimate fluorescence emission of vegetation for mapping vegetation stress as chlorophyll content and/or carotenoid content changes...not related to changes in chlorophyll content or the carotenoids /chlorophyll ratio. PRI is an indicator of chronic salinity stress and may be used as

STAY-GREEN and Chlorophyll Catabolic Enzymes Interact at Light-Harvesting Complex II for Chlorophyll Detoxification during Leaf Senescence in Arabidopsis[C][W

PubMed Central

Sakuraba, Yasuhito; Schelbert, Silvia; Park, So-Yon; Han, Su-Hyun; Lee, Byoung-Doo; Andrès, Céline Besagni; Kessler, Felix; Hörtensteiner, Stefan; Paek, Nam-Chon

2012-01-01

During leaf senescence, plants degrade chlorophyll to colorless linear tetrapyrroles that are stored in the vacuole of senescing cells. The early steps of chlorophyll breakdown occur in plastids. To date, five chlorophyll catabolic enzymes (CCEs), NONYELLOW COLORING1 (NYC1), NYC1-LIKE, pheophytinase, pheophorbide a oxygenase (PAO), and red chlorophyll catabolite reductase, have been identified; these enzymes catalyze the stepwise degradation of chlorophyll to a fluorescent intermediate, pFCC, which is then exported from the plastid. In addition, STAY-GREEN (SGR), Mendel’s green cotyledon gene encoding a chloroplast protein, is required for the initiation of chlorophyll breakdown in plastids. Senescence-induced SGR binds to light-harvesting complex II (LHCII), but its exact role remains elusive. Here, we show that all five CCEs also specifically interact with LHCII. In addition, SGR and CCEs interact directly or indirectly with each other at LHCII, and SGR is essential for recruiting CCEs in senescing chloroplasts. PAO, which had been attributed to the inner envelope, is found to localize in the thylakoid membrane. These data indicate a predominant role for the SGR-CCE-LHCII protein interaction in the breakdown of LHCII-located chlorophyll, likely to allow metabolic channeling of phototoxic chlorophyll breakdown intermediates upstream of nontoxic pFCC. PMID:22366162

Defining the ecologically relevant mixed-layer depth for Antarctica's coastal seas

NASA Astrophysics Data System (ADS)

Carvalho, Filipa; Kohut, Josh; Oliver, Matthew J.; Schofield, Oscar

2017-01-01

Mixed-layer depth (MLD) has been widely linked to phytoplankton dynamics in Antarctica's coastal regions; however, inconsistent definitions have made intercomparisons among region-specific studies difficult. Using a data set with over 20,000 water column profiles corresponding to 32 Slocum glider deployments in three coastal Antarctic regions (Ross Sea, Amundsen Sea, and West Antarctic Peninsula), we evaluated the relationship between MLD and phytoplankton vertical distribution. Comparisons of these MLD estimates to an applied definition of phytoplankton bloom depth, as defined by the deepest inflection point in the chlorophyll profile, show that the maximum of buoyancy frequency is a good proxy for an ecologically relevant MLD. A quality index is used to filter profiles where MLD is not determined. Despite the different regional physical settings, we found that the MLD definition based on the maximum of buoyancy frequency best describes the depth to which phytoplankton can be mixed in Antarctica's coastal seas.

Response of an algal consortium to diesel under varying culture conditions.

PubMed

Chavan, Anal; Mukherji, Suparna

2010-03-01

A diesel-tolerant sessile freshwater algal consortium obtained from the vicinity of Powai Lake (Mumbai, India) was cultured in the laboratory. The presence of diesel in batch cultures enhanced the maximum specific growth rate of the algal consortium. With decrease in light-dark (L:D) cycle from 20:4 to 4:20 h, the chlorophyll-a levels decreased; however, the removal of diesel was found to be maximum at L:D of 18:6 h with 37.6% degradation over and above controls. In addition to growth in the form of green clumps, white floating biomass was found surrounding the diesel droplets on the surface. This culture predominated at the least L:D ratio of 4:20 h. Studies confirmed the ability of the floating organisms to grow heterotrophically in the dark utilizing diesel as carbon source and also in the presence of light in a medium devoid of organic carbon sources.

Nitrogen balancing and xylose addition enhances growth capacity and protein content in Chlorella minutissima cultures.

PubMed

Freitas, B C B; Esquível, M G; Matos, R G; Arraiano, C M; Morais, M G; Costa, J A V

2016-10-01

This study aimed to examine the metabolic changes in Chlorella minutissima cells grown under nitrogen-deficient conditions and with the addition of xylose. The cell density, maximum photochemical efficiency, and chlorophyll and lipid levels were measured. The expression of two photosynthetic proteins, ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) and the beta subunit (AtpB) of adenosine triphosphate synthase, were measured. Comparison of cells grown in medium with a 50% reduction in the nitrogen concentration versus the traditional medium solution revealed that the cells grown under nitrogen-deficient conditions exhibited an increased growth rate, higher maximum cell density (12.7×10(6)cellsmL(-1)), optimal PSII efficiency (0.69) and decreased lipid level (25.08%). This study has taken the first steps toward protein detection in Chlorella minutissima, and the results can be used to optimize the culturing of other microalgae. Copyright © 2016 Elsevier Ltd. All rights reserved.

Recent variability in the Atlantic water intrusion and water masses in Kongsfjorden, an Arctic fjord

NASA Astrophysics Data System (ADS)

Divya, David T.; Krishnan, K. P.

2017-03-01

The present study reports high inter-annual variability in the water masses and in the intrusion of Atlantic origin waters in Kongsfjorden from 2000 to 2013 using both the historical (2000-2010 summers) and recent CTD measurements (2011-2013 summer/fall). An earlier intrusion of Atlantic Water (AW) into Kongsfjorden was observed in the contemporary years. An overall summertime subsurface warming is evident from the maximum September AW temperature in 2011 (4.8 °C), 2012 (5.8 °C) and 2013 (7 °C). The combination of a compensating surface flow to the subsurface intrusion of AW and the strong southeasterly surface winds during the peak summer, resulted in a corresponding net outflow of the surface fresh water layer from Kongsfjorden. This led to the decreased freshwater volume inside the fjord during 2013 (1 km3) compared to 2011 (3.1 km3) and 2012 (2.3 km3).

Influence of sub-surface damage evolution on low-energy-plasma-driven deuterium permeation through tungsten

NASA Astrophysics Data System (ADS)

Kapser, Stefan; Balden, Martin; Fiorini da Silva, Tiago; Elgeti, Stefan; Manhard, Armin; Schmid, Klaus; Schwarz-Selinger, Thomas; von Toussaint, Udo

2018-05-01

Low-energy-plasma-driven deuterium permeation through tungsten at 300 K and 450 K has been investigated. Microstructural analysis by scanning electron microscopy, assisted by focused ion beam, revealed sub-surface damage evolution only at 300 K. This damage evolution was correlated with a significant evolution of the deuterium amount retained below the plasma-exposed surface. Although both of these phenomena were observed for 300 K exposure temperature only, the deuterium permeation flux at both exposure temperatures was indistinguishable within the experimental uncertainty. The permeation flux was used to estimate the maximum ratio of solute-deuterium to tungsten atoms during deuterium-plasma exposure at both temperatures and thus in the presence and absence of damage evolution. Diffusion-trapping simulations revealed the proximity of damage evolution to the implantation surface as the reason for an only insignificant decrease of the permeation flux.

Lil3 dimerization and chlorophyll binding in Arabidopsis thaliana.

PubMed

Mork-Jansson, Astrid Elisabeth; Gargano, Daniela; Kmiec, Karol; Furnes, Clemens; Shevela, Dmitriy; Eichacker, Lutz Andreas

2015-10-07

The two-helix light harvesting like (Lil) protein Lil3 belongs to the family of chlorophyll binding light harvesting proteins of photosynthetic membranes. A function in tetrapyrrol synthesis and stabilization of geranylgeraniol reductase has been shown. Lil proteins contain the chlorophyll a/b-binding motif; however, binding of chlorophyll has not been demonstrated. We find that Lil3.2 from Arabidopsis thaliana forms heterodimers with Lil3.1 and binds chlorophyll. Lil3.2 heterodimerization (25±7.8 nM) is favored relative to homodimerization (431±59 nM). Interaction of Lil3.2 with chlorophyll a (231±49 nM) suggests that heterodimerization precedes binding of chlorophyll in Arabidopsis thaliana. Copyright © 2015 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Chlorophyll Synthase under Epigenetic Surveillance Is Critical for Vitamin E Synthesis, and Altered Expression Affects Tocopherol Levels in Arabidopsis1[OPEN

PubMed Central

Zhang, Chunyu; Zhang, Wei; Ren, Guodong; Li, Delin; Cahoon, Rebecca E.; Chen, Ming; Zhou, Yongming; Yu, Bin

2015-01-01

Chlorophyll synthase catalyzes the final step in chlorophyll biosynthesis: the esterification of chlorophyllide with either geranylgeranyl diphosphate or phytyl diphosphate (PDP). Recent studies have pointed to the involvement of chlorophyll-linked reduction of geranylgeranyl by geranylgeranyl reductase as a major pathway for the synthesis of the PDP precursor of tocopherols. This indirect pathway of PDP synthesis suggests a key role of chlorophyll synthase in tocopherol production to generate the geranylgeranyl-chlorophyll substrate for geranylgeranyl reductase. In this study, contributions of chlorophyll synthase to tocopherol formation in Arabidopsis (Arabidopsis thaliana) were explored by disrupting and altering expression of the corresponding gene CHLOROPHYLL SYNTHASE (CHLSYN; At3g51820). Leaves from the homozygous chlysyn1-1 null mutant were nearly devoid of tocopherols, whereas seeds contained only approximately 25% of wild-type tocopherol levels. Leaves of RNA interference lines with partial suppression of CHLSYN displayed marked reductions in chlorophyll but up to a 2-fold increase in tocopherol concentrations. Cauliflower mosaic virus35S-mediated overexpression of CHLSYN unexpectedly caused a cosuppression phenotype at high frequencies accompanied by strongly reduced chlorophyll content and increased tocopherol levels. This phenotype and the associated detection of CHLSYN-derived small interfering RNAs were reversed with CHLSYN overexpression in rna-directed rna polymerase6 (rdr6), which is defective in RNA-dependent RNA polymerase6, a key enzyme in sense transgene-induced small interfering RNA production. CHLSYN overexpression in rdr6 had little effect on chlorophyll content but resulted in up to a 30% reduction in tocopherol levels in leaves. These findings show that altered CHLSYN expression impacts tocopherol levels and also, show a strong epigenetic surveillance of CHLSYN to control chlorophyll and tocopherol synthesis. PMID:26048882

Chlorophyll Synthase under Epigenetic Surveillance Is Critical for Vitamin E Synthesis, and Altered Expression Affects Tocopherol Levels in Arabidopsis.

PubMed

Zhang, Chunyu; Zhang, Wei; Ren, Guodong; Li, Delin; Cahoon, Rebecca E; Chen, Ming; Zhou, Yongming; Yu, Bin; Cahoon, Edgar B

2015-08-01

Chlorophyll synthase catalyzes the final step in chlorophyll biosynthesis: the esterification of chlorophyllide with either geranylgeranyl diphosphate or phytyl diphosphate (PDP). Recent studies have pointed to the involvement of chlorophyll-linked reduction of geranylgeranyl by geranylgeranyl reductase as a major pathway for the synthesis of the PDP precursor of tocopherols. This indirect pathway of PDP synthesis suggests a key role of chlorophyll synthase in tocopherol production to generate the geranylgeranyl-chlorophyll substrate for geranylgeranyl reductase. In this study, contributions of chlorophyll synthase to tocopherol formation in Arabidopsis (Arabidopsis thaliana) were explored by disrupting and altering expression of the corresponding gene CHLOROPHYLL SYNTHASE (CHLSYN; At3g51820). Leaves from the homozygous chlysyn1-1 null mutant were nearly devoid of tocopherols, whereas seeds contained only approximately 25% of wild-type tocopherol levels. Leaves of RNA interference lines with partial suppression of CHLSYN displayed marked reductions in chlorophyll but up to a 2-fold increase in tocopherol concentrations. Cauliflower mosaic virus35S-mediated overexpression of CHLSYN unexpectedly caused a cosuppression phenotype at high frequencies accompanied by strongly reduced chlorophyll content and increased tocopherol levels. This phenotype and the associated detection of CHLSYN-derived small interfering RNAs were reversed with CHLSYN overexpression in rna-directed rna polymerase6 (rdr6), which is defective in RNA-dependent RNA polymerase6, a key enzyme in sense transgene-induced small interfering RNA production. CHLSYN overexpression in rdr6 had little effect on chlorophyll content but resulted in up to a 30% reduction in tocopherol levels in leaves. These findings show that altered CHLSYN expression impacts tocopherol levels and also, show a strong epigenetic surveillance of CHLSYN to control chlorophyll and tocopherol synthesis. © 2015 American Society of Plant Biologists. All Rights Reserved.

HPLC Analysis of Chlorophyll a, Chlorophyll b, and Beta-Carotene in Collard Greens: A Project for a Problem-Oriented Laboratory Course.

ERIC Educational Resources Information Center

Silveira, Augustine, Jr.; And Others

1984-01-01

High performance liquid chromatography (HPLC) is used to separate and quantitate beta-carotene, chlorophyll a, and chlorophyll b originating from collard greens. Experimental procedures used and typical results obtained are discussed. (JN)

The Green Gut: Chlorophyll Degradation in the Gut of Spodoptera littoralis.

PubMed

Badgaa, Amarsanaa; Büchler, Rita; Wielsch, Natalie; Walde, Marie; Heintzmann, Rainer; Pauchet, Yannik; Svatos, Ales; Ploss, Kerstin; Boland, Wilhelm

2015-11-01

Chlorophylls, the most prominent natural pigments, are part of the daily diet of herbivorous insects. The spectrum of ingested and digested chlorophyll metabolites compares well to the pattern of early chlorophyll-degradation products in senescent plants. Intact chlorophyll is rapidly degraded by proteins in the front- and midgut. Unlike plants, insects convert both chlorophyll a and b into the corresponding catabolites. MALDI-TOF/MS imaging allowed monitoring the distribution of the chlorophyll catabolites along the gut of Spodoptera littoralis larvae. The chlorophyll degradation in the fore- and mid-gut is strongly pH dependent, and requires alkaline conditions. Using LC-MS/MS analysis we identified a lipocalin-type protein in the intestinal fluid of S. littoralis homolog to the chlorophyllide a binding protein from Bombyx mori. Widefield and high-resolution autofluorescence microscopy revealed that the brush border membranes are covered with the chlorophyllide binding protein tightly bound via its GPI-anchor to the gut membrane. A function in defense against gut microbes is discussed.

Study on changing rules of chlorophyll concentration of detached canola leaves

NASA Astrophysics Data System (ADS)

Huang, Min; Feng, Lei; He, Yong; Zhu, Zheyan

2006-09-01

Chlorophyll is important for crops. The chlorophyll concentration is commonly used as the principal symptom of senescence. The objective of this paper was to study the relationship between the chlorophyll concentration and the time after the leaves being separated from the canola to confirm the detached leaves' senescence rate. The chlorophyll meter (SPAD meter) has been used in chlorophyll concentration measurement of fruit trees, sugar maple leaves in forest, corn with varying color and so on. In the experiment, a Minolta SPAD-502 chlorophyll Meter was used for measuring the chlorophyll concentration after picking off the canola leaves for 0 hour, 5 hours, 15 hours, 25 hours and 40 hours, and 25 samples were measured. As a result, the leaf senescence rules were found by observing the changing curves of the leaves' SPAD values. The original detached canola leaves were divided into three kinds of samples, and a certain senescence rule was found for each kind of samples. The results could provide good methods support to delay leaf senescence.

The effects of particles and dissolved materials on in situ algal pigment fluorescence sensors

NASA Astrophysics Data System (ADS)

Saraceno, J.; Bergamaschi, B. A.; Downing, B. D.

2013-12-01

Field deployable sensors that measure algal pigment fluorescence (APF), such as chlorophyll-a (excitation/emission ca. 470/685 nm), and phycocyanin (ca. 590/685 nm), have been used to estimate algal biomass and study food-web dynamics in coastal and oceanic waters for many years. There is also widespread use of these sensors in real time river-observing networks. However, freshwater systems often possess elevated levels of suspended solids and dissolved organic material that can interfere with optical measurements. Data collected under conditions that result in interferences may not be comparable across time and between sites unless the data are appropriately corrected. Using standard reference materials and a surrogate for algal fluorescence (Rhodamine WT), lab experiments were conducted on several commercially available sensors to quantify sensitivity to interferences over a range of naturally occurring surface water conditions (DOC : 0-30 mg/L and turbidity: 0- 1000 FNU ). Chlorophyll-a sensors exhibited a slight but significant positive bias (<1%) at DOC concentrations < 2 mg/L, and a negative, non-linear bias at DOC concentrations >2 mg/L, with signal quenching reaching a maximum of 15% at 30 mg/L DOC. All phycocyanin sensors displayed a positive non-linear bias with DOC concentration, reaching a maximum of 40% difference at 30 mg/L DOC. Both chlorophyll-a and phycocyanin sensors showed a positive linear relationship with suspended solids concentration (as indicated by turbidity).The effect of suspended solids on APF output can be explained by the detection of scattered excitation light (leaking through emission filters). Similar qualitative effects were observed for the sensors tested, though the magnitude of the effect varied among sensor type. This indicates that differences in sensor designs such as geometry, wavelength and signal post processing techniques is related to its sensitivity to interferences. Although sensors exhibited significant cross sensitivity to interferences, our results indicate that simple corrections can largely remove sensor bias. To remove bias due to optical interferences and generate high quality, repeatable APF data, knowledge of the optical properties of the matrix and/or coincident measures of the concentration of suspended solids and dissolved organics (through surrogates such as turbidity and colored dissolved organic matter (cDOM) fluorescence, respectively), are typically needed.

Genetic and Hormonal Regulation of Chlorophyll Degradation during Maturation of Seeds with Green Embryos.

PubMed

Smolikova, Galina; Dolgikh, Elena; Vikhnina, Maria; Frolov, Andrej; Medvedev, Sergei

2017-09-16

The embryos of some angiosperms (usually referred to as chloroembryos) contain chlorophylls during the whole period of embryogenesis. Developing embryos have photochemically active chloroplasts and are able to produce assimilates, further converted in reserve biopolymers, whereas at the late steps of embryogenesis, seeds undergo dehydration, degradation of chlorophylls, transformation of chloroplast in storage plastids, and enter the dormancy period. However, in some seeds, the process of chlorophyll degradation remains incomplete. These residual chlorophylls compromise the quality of seed material in terms of viability, nutritional value, and shelf life, and represent a serious challenge for breeders and farmers. The mechanisms of chlorophyll degradation during seed maturation are still not completely understood, and only during the recent decades the main pathways and corresponding enzymes could be characterized. Among the identified players, the enzymes of pheophorbide a oxygenase pathway and the proteins encoded by STAY GREEN ( SGR ) genes are the principle ones. On the biochemical level, abscisic acid (ABA) is the main regulator of seed chlorophyll degradation, mediating activity of corresponding catabolic enzymes on the transcriptional level. In general, a deep insight in the mechanisms of chlorophyll degradation is required to develop the approaches for production of chlorophyll-free high quality seeds.

Low light intensity and nitrogen starvation modulate the chlorophyll content of Scenedesmus dimorphus.

PubMed

Ferreira, V S; Pinto, R F; Sant'Anna, C

2016-03-01

Chlorophyll is a photosynthetic pigment found in plants and algal organisms and is a bioproduct with human health benefits and a great potential for use in the food industry. The chlorophyll content in microalgae strains varies in response to environmental factors. In this work, we assessed the effect of nitrogen depletion and low light intensity on the chlorophyll content of the Scenedesmus dimorphus microalga. The growth of S. dimorphus under low light intensity led to a reduction in cell growth and volume as well as increased cellular chlorophyll content. Nitrogen starvation led to a reduction in cell growth and the chlorophyll content, changes in the yield and productivity of chlorophylls a and b. Transmission electron microscopy was used to investigate the ultrastructural changes in the S. dimorphus exposed to nitrogen and light deficiency. In contrast to nitrogen depletion, low light availability was an effective mean for increasing the total chlorophyll content of green microalga S. dimorphus. The findings acquired in this work are of great biotechnological importance to extend knowledge of choosing the right culture condition to stimulate the effectiveness of microalgae strains for chlorophyll production purposes. © 2015 The Society for Applied Microbiology.

Genetic and Hormonal Regulation of Chlorophyll Degradation during Maturation of Seeds with Green Embryos

PubMed Central

Dolgikh, Elena; Vikhnina, Maria; Frolov, Andrej

2017-01-01

The embryos of some angiosperms (usually referred to as chloroembryos) contain chlorophylls during the whole period of embryogenesis. Developing embryos have photochemically active chloroplasts and are able to produce assimilates, further converted in reserve biopolymers, whereas at the late steps of embryogenesis, seeds undergo dehydration, degradation of chlorophylls, transformation of chloroplast in storage plastids, and enter the dormancy period. However, in some seeds, the process of chlorophyll degradation remains incomplete. These residual chlorophylls compromise the quality of seed material in terms of viability, nutritional value, and shelf life, and represent a serious challenge for breeders and farmers. The mechanisms of chlorophyll degradation during seed maturation are still not completely understood, and only during the recent decades the main pathways and corresponding enzymes could be characterized. Among the identified players, the enzymes of pheophorbide a oxygenase pathway and the proteins encoded by STAY GREEN (SGR) genes are the principle ones. On the biochemical level, abscisic acid (ABA) is the main regulator of seed chlorophyll degradation, mediating activity of corresponding catabolic enzymes on the transcriptional level. In general, a deep insight in the mechanisms of chlorophyll degradation is required to develop the approaches for production of chlorophyll-free high quality seeds. PMID:28926960

Elucidation of Genetic Backgrounds Necessary for Chlorophyll a Biosynthesis Toward Artificial Creation of Oxygenic Photosynthesis

NASA Astrophysics Data System (ADS)

Tsukatani, Yusuke; Masuda, Shinji

2015-09-01

We succeeded to create the genetically modified purple photosynthetic bacterium capable of synthesizing chlorophyll a. The results indicate that not only chlorophyll synthase, but also an enzyme for galactolipid synthesis and reaction center proteins are required for accumulating chlorophyll a.

A nondestructive method to estimate the chlorophyll content of Arabidopsis seedlings

DOE PAGES

Liang, Ying; Urano, Daisuke; Liao, Kang-Ling; ...

2017-04-14

Chlorophyll content decreases in plants under stress conditions, therefore it is used commonly as an indicator of plant health. Arabidopsis thaliana offers a convenient and fast way to test physiological phenotypes of mutations and treatments. But, chlorophyll measurements with conventional solvent extraction are not applicable to Arabidopsis leaves due to their small size, especially when grown on culture dishes. We provide a nondestructive method for chlorophyll measurement whereby the red, green and blue (RGB) values of a color leaf image is used to estimate the chlorophyll content from Arabidopsis leaves. The method accommodates different profiles of digital cameras by incorporatingmore » the ColorChecker chart to make the digital negative profiles, to adjust the white balance, and to calibrate the exposure rate differences caused by the environment so that this method is applicable in any environment. We chose an exponential function model to estimate chlorophyll content from the RGB values, and fitted the model parameters with physical measurements of chlorophyll contents. As further proof of utility, this method was used to estimate chlorophyll content of G protein mutants grown on different sugar to nitrogen ratios. Our method is a simple, fast, inexpensive, and nondestructive estimation of chlorophyll content of Arabidopsis seedlings. This method lead to the discovery that G proteins are important in sensing the C/N balance to control chlorophyll content in Arabidopsis.« less

Plant pigments (antioxidants) of medicinal plants Malva silvestris L. and Malva moschata L. (Malvaceae).

PubMed

Redzić, Sulejman; Hodzić, Nizama; Tuka, Mijat

2005-05-01

Qualitative-quantitative structure of plant pigments in wild plants Malva silvestrs L. and Malva moschata L. (Malvaceae), which were collected in 20 locations in Sarajevo area and surroundings, was tested during spring and summer in 2003. Acetone extracts of both categories were made and rising paper-chromatography done for the purpose of qualitative analysis. Quantitative analysis was done by spectrophotometry. Chlorophyll a, chlorophyll b and xanthophylls presence was confirmed by separation of pigments from acetone extract of these plant species. Spectrophotometric analysis of acetone extracts showed these results (given in mg/L): chlorophyll a 2,386, chlorophyll b 0,332 and carrotenoides 1,037. Data given in mg/g dry substance are: chlorophyll a 1,193x10(-2), chlorophyll b 1,66x10(-3), and carrotenoides 5,185x10(-3). Pigments structure (in mg/L) in species Malva moschata is 1,6 for chlorophyll; 1,419 for chlorophyll b; and 0,364 for carrotenoides. Data given in mg/g are: chlorophyll a 8x10(-3), chlorophyll b 7,09x10(-3), and carrotenoides 1,82x10(-3). Considering that species Malva moschata L. grows on ecologically clear soils as opposed to well-known medicinal species Malva sylvestris L., and considering the production of phytomass, phytochemical structure and pharmacological influence it can be considered very medical and be given advantage over this wider spread category.

Chlorophyll content retrieval from hyperspectral remote sensing imagery.

PubMed

Yang, Xiguang; Yu, Ying; Fan, Wenyi

2015-07-01

Chlorophyll content is the essential parameter in the photosynthetic process determining leaf spectral variation in visible bands. Therefore, the accurate estimation of the forest canopy chlorophyll content is a significant foundation in assessing forest growth and stress affected by diseases. Hyperspectral remote sensing with high spatial resolution can be used for estimating chlorophyll content. In this study, the chlorophyll content was retrieved step by step using Hyperion imagery. Firstly, the spectral curve of the leaf was analyzed, 25 spectral characteristic parameters were identified through the correlation coefficient matrix, and a leaf chlorophyll content inversion model was established using a stepwise regression method. Secondly, the pixel reflectance was converted into leaf reflectance by a geometrical-optical model (4-scale). The three most important parameters of reflectance conversion, including the multiple scattering factor (M 0 ), and the probability of viewing the sunlit tree crown (P T ) and the background (P G ), were estimated by leaf area index (LAI), respectively. The results indicated that M 0 , P T , and P G could be described as a logarithmic function of LAI, with all R (2) values above 0.9. Finally, leaf chlorophyll content was retrieved with RMSE = 7.3574 μg/cm(2), and canopy chlorophyll content per unit ground surface area was estimated based on leaf chlorophyll content and LAI. Chlorophyll content mapping can be useful for the assessment of forest growth stage and diseases.

Monitoring the efficacy and metabolism of phenylcarbamates in sugar beet and black nightshade by chlorophyll fluorescence parameters.

PubMed

Abbaspoor, Majid; Streibig, Jens C

2007-06-01

Desmedipham, phenmedipham and a 50% mixture of the two decreased the maximum quantum efficiency of photosystem II (F(v)/F(m)) and the relative changes at the J step (F(vj)) immediately after spraying in both sugar beet and black nightshade grown in the greenhouse. Sugar beet recovered more rapidly from phenmedipham and the mixture than from desmedipham. Desmedipham and the mixture irreversibly affected F(v)/F(m) and F(vj) in black nightshade at much lower doses than in sugar beet. Black nightshade recovered from phenmedipham injury at the highest dose in the first experiment (120 g AI ha(-1)) but not in the second experiment (500 g AI ha(-1)). The dry matter dose-response relationships and the energy pipeline presentation confirmed the same trend. There was a relatively good correlation between F(vj) taken 1 day after spraying and dry matter taken 2 or 3 weeks after spraying. The differential speed of herbicide metabolism between weed and crop plays an important role in herbicide selectivity and can be studied by using appropriate chlorophyll a fluorescence parameters. Copyright 2007 Society of Chemical Industry.

Seasonal Differences in Spatial Scales of Chlorophyll-A Concentration in Lake TAIHU，CHINA

NASA Astrophysics Data System (ADS)

Bao, Y.; Tian, Q.; Sun, S.; Wei, H.; Tian, J.

2012-08-01

Spatial distribution of chlorophyll-a (chla) concentration in Lake Taihu is non-uniform and seasonal variability. Chla concentration retrieval algorithms were separately established using measured data and remote sensing images (HJ-1 CCD and MODIS data) in October 2010, March 2011, and September 2011. Then parameters of semi- variance were calculated on the scale of 30m, 250m and 500m for analyzing spatial heterogeneity in different seasons. Finally, based on the definitions of Lumped chla (chlaL) and Distributed chla (chlaD), seasonal model of chla concentration scale error was built. The results indicated that: spatial distribution of chla concentration in spring was more uniform. In summer and autumn, chla concentration in the north of the lake such as Meiliang Bay and Zhushan Bay was higher than that in the south of Lake Taihu. Chla concentration on different scales showed the similar structure in the same season, while it had different structure in different seasons. And inversion chla concentration from MODIS 500m had a greater scale error. The spatial scale error changed with seasons. It was higher in summer and autumn than that in spring. The maximum relative error can achieve 23%.

Integrating Biology into the General Chemistry Laboratory: Fluorometric Analysis of Chlorophyll "a"

ERIC Educational Resources Information Center

Wesolowski, Meredith C.

2014-01-01

A laboratory experiment that introduces fluorometry of chlorophyll "a" at the general chemistry level is described. The use of thin-layer chromatography to isolate chlorophyll "a" from spirulina and leaf matter enables quantification of small amounts of chlorophyll "a" via fluorometry. Student results were reasonably…

Characterisation of chlorophyll a solubilised in sodium lauryl sulphate micelles

NASA Astrophysics Data System (ADS)

Mukherjee, T.; Sapre, A. V.; Mittal, Jai P.

1980-01-01

Poisson statistics has been applied to the problem of solubilisation of chlorophyll a in sodium lauryl sulphate micelles. Dilution experiments have been carried out to support the finding that each unit of chlorophyll a contributing to the 740 nm band contains just one chlorophyll a molecule.

Picophytoplankton variability: Influence of winter convective mixing and advection in the northeastern Arabian Sea

NASA Astrophysics Data System (ADS)

Bemal, Suchandan; Anil, Arga Chandrashekar; Shankar, D.; Remya, R.; Roy, Rajdeep

2018-04-01

The deepening of mixed layer and ensuing changes in optical and physicochemical properties of euphotic zone can influence phytoplankton community dynamics in the northeastern Arabian Sea during winter monsoon. The response of picophytoplankton community to such changes during winter convective mixing is not well understood. Herein, we have compared variations in the picophytoplankton community structure during early (November-December 2012), peak (end-January 2014) and late (mid-February 2015) winter monsoon from three separate cruises in the southern northeastern Arabian Sea. The higher Synechococcus abundance owing to entrainment of nutrients in mixed layer was observed during peak winter monsoon, while the concomitant changes in nitrate concentration, light and oxygen environment restricted Prochlorococcus growth resulting in lower abundance during the same period. This highlights the diverse responses of picophytoplankton groups to physicochemical changes of water column during winter convective mixing. The divinyl chlorophyll b/a ratio (marker for Prochlorococcus ecotypes) indicated prevalence of one low-light adapted ecotype (sensitive to light shock) in sub-surface water, one high-light adapted ecotype in surface water during early winter monsoon and both disappeared during intense mixing period in peak winter monsoon. Subsequently, a distinct low-light adapted ecotype, capable to tolerate light shock, was noticed during late winter monsoon and we argue that this ecotype is introduced to southern northeastern Arabian Sea through advection from north by sub-surface circulation. The total picophytoplankton biomass available to microbial loop is restored during late winter monsoon, when stratification begins, with a higher abundance of Synechococcus and the re-occurrence of Prochlorococcus population in the region. These inferences indicate that variability in picophytoplankton community structure and their contribution to the microbial loop are driven by convective mixing and advection, which in turn influence ecosystem functioning and trophodynamics of the southern northeastern Arabian Sea.

Occurrence of fecal indicator bacteria in surface waters and the subsurface aquifer in Key Largo, Florida.

PubMed Central

Paul, J H; Rose, J B; Jiang, S; Kellogg, C; Shinn, E A

1995-01-01

Sewage waste disposal facilities in the Florida Keys include septic tanks and individual package plants in place of municipal collection facilities in most locations. In Key Largo, both facilities discharge into the extremely porous Key Largo limestone. To determine whether there was potential contamination of the subsurface aquifer and nearby coastal surface waters by such waste disposal practices, we examined the presence of microbial indicators commonly found in sewage (fecal coliforms, Clostridium perfringens, and enterococci) and aquatic microbial parameters (viral direct counts, bacterial direct counts, chlorophyll a, and marine vibriophage) in injection well effluent, monitoring wells that followed a transect from onshore to offshore, and surface waters above these wells in two separate locations in Key Largo in August 1993 and March 1994. Effluent and waters from onshore shallow monitoring wells (1.8- to 3.7-m depth) contained two or all three of the fecal indicators in all three samples taken, whereas deeper wells (10.7- to 12.2-m depth) at these same sites contained few or none. The presence of fecal indicators was found in two of five nearshore wells (i.e., those that were < or = 1.8 miles [< or = 2.9 km] from shore), whereas offshore wells (> or = 2.1 to 5.7 miles [< or = 3.4 to 9.2 km] from shore) showed little sign of contamination. Indicators were also found in surface waters in a canal in Key Largo and in offshore surface waters in March but not in August. Collectively, these results suggest that fecal contamination of the shallow onshore aquifer, parts of the nearshore aquifer, and certain surface waters has occurred.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:7793943

Non-destructive Determination of Shikimic Acid Concentration in Transgenic Maize Exhibiting Glyphosate Tolerance Using Chlorophyll Fluorescence and Hyperspectral Imaging

PubMed Central

Feng, Xuping; Yu, Chenliang; Chen, Yue; Peng, Jiyun; Ye, Lanhan; Shen, Tingting; Wen, Haiyong; He, Yong

2018-01-01

The development of transgenic glyphosate-tolerant crops has revolutionized weed control in crops in many regions of the world. The early, non-destructive identification of superior plant phenotypes is an important stage in plant breeding programs. Here, glyphosate-tolerant transgenic maize and its parental wild-type control were studied at 2, 4, 6, and 8 days after glyphosate treatment. Visible and near-infrared hyperspectral imaging and chlorophyll fluorescence imaging techniques were applied to monitor the performance of plants. In our research, transgenic maize, which was highly tolerant to glyphosate, was phenotyped using these high-throughput non-destructive methods to validate low levels of shikimic acid accumulation and high photochemical efficiency of photosystem II as reflected by maximum quantum yield and non-photochemical quenching in response to glyphosate. For hyperspectral imaging analysis, the combination of spectroscopy and chemometric methods was used to predict shikimic acid concentration. Our results indicated that a partial least-squares regression model, built on optimal wavelengths, effectively predicted shikimic acid concentrations, with a coefficient of determination value of 0.79 for the calibration set, and 0.82 for the prediction set. Moreover, shikimic acid concentration estimates from hyperspectral images were visualized on the prediction maps by spectral features, which could help in developing a simple multispectral imaging instrument for non-destructive phenotyping. Specific physiological effects of glyphosate affected the photochemical processes of maize, which induced substantial changes in chlorophyll fluorescence characteristics. A new data-driven method, combining mean fluorescence parameters and featuring a screening approach, provided a satisfactory relationship between fluorescence parameters and shikimic acid content. The glyphosate-tolerant transgenic plants can be identified with the developed discrimination model established on important wavelengths or sensitive fluorescence parameters 6 days after glyphosate treatment. The overall results indicated that both hyperspectral imaging and chlorophyll fluorescence imaging techniques could provide useful tools for stress phenotyping in maize breeding programs and could enable the detection and evaluation of superior genotypes, such as glyphosate tolerance, with a non-destructive high-throughput technique. PMID:29686693

Non-destructive Determination of Shikimic Acid Concentration in Transgenic Maize Exhibiting Glyphosate Tolerance Using Chlorophyll Fluorescence and Hyperspectral Imaging.

PubMed

Feng, Xuping; Yu, Chenliang; Chen, Yue; Peng, Jiyun; Ye, Lanhan; Shen, Tingting; Wen, Haiyong; He, Yong

2018-01-01

The development of transgenic glyphosate-tolerant crops has revolutionized weed control in crops in many regions of the world. The early, non-destructive identification of superior plant phenotypes is an important stage in plant breeding programs. Here, glyphosate-tolerant transgenic maize and its parental wild-type control were studied at 2, 4, 6, and 8 days after glyphosate treatment. Visible and near-infrared hyperspectral imaging and chlorophyll fluorescence imaging techniques were applied to monitor the performance of plants. In our research, transgenic maize, which was highly tolerant to glyphosate, was phenotyped using these high-throughput non-destructive methods to validate low levels of shikimic acid accumulation and high photochemical efficiency of photosystem II as reflected by maximum quantum yield and non-photochemical quenching in response to glyphosate. For hyperspectral imaging analysis, the combination of spectroscopy and chemometric methods was used to predict shikimic acid concentration. Our results indicated that a partial least-squares regression model, built on optimal wavelengths, effectively predicted shikimic acid concentrations, with a coefficient of determination value of 0.79 for the calibration set, and 0.82 for the prediction set. Moreover, shikimic acid concentration estimates from hyperspectral images were visualized on the prediction maps by spectral features, which could help in developing a simple multispectral imaging instrument for non-destructive phenotyping. Specific physiological effects of glyphosate affected the photochemical processes of maize, which induced substantial changes in chlorophyll fluorescence characteristics. A new data-driven method, combining mean fluorescence parameters and featuring a screening approach, provided a satisfactory relationship between fluorescence parameters and shikimic acid content. The glyphosate-tolerant transgenic plants can be identified with the developed discrimination model established on important wavelengths or sensitive fluorescence parameters 6 days after glyphosate treatment. The overall results indicated that both hyperspectral imaging and chlorophyll fluorescence imaging techniques could provide useful tools for stress phenotyping in maize breeding programs and could enable the detection and evaluation of superior genotypes, such as glyphosate tolerance, with a non-destructive high-throughput technique.

Eco-physiological basis of shade adaptation of Camellia nitidissima, a rare and endangered forest understory plant of Southeast Asia.

PubMed

Chai, Shengfeng; Tang, Jianmin; Mallik, Azim; Shi, Yancai; Zou, Rong; Li, Jitao; Wei, Xiao

2018-02-07

Camellia nitidissima, a rare and endangered shrub is narrowly distributed in South China and North Vietnam occurring in forest understory. Their light tolerance mechanism is unclear. We measured photosynthesis and related parameters on 2-years-old cuttings growing at 10, 30, 50 and 100% sunlight. Our research question was: At what light level are C. nitidissima cuttings responding most favorably, and what is the eco-physiological basis for their response to light? We hypothesized that as a forest understory growth of C. nitidissima would respond most favorably at low to intermediate light by optimizing photosynthetic activity, and high light will affect photosynthetic functions due to photoinhibition, damage of photosynthetic apparatus and concomitant enzyme activity. With increasing light, the maximum net photosynthetic rate (P Nmax ) and apparent quantum yield (AQY) decreased, while the light compensation point increased, and light saturation point first increased followed by a decrease. The P Nmax and AQY under 50 and 100% sunlight were significantly lower than that under 10 and 30% sunlight. The chlorophyll fluorescence parameters F m , F v , F v /F m all decreased under high light (> 50%). The contents of chlorophyll a (Chla), chlorophyll b (Chlb), and carotenoid (Car) decreased with increasing light. Relative conductivity, malondialdehyde (MDA) and proline contents in leaves were significantly increased in high light but we found no significant difference in these indices at 10 and 30% sunlight. We conclude that C. nitidissima is a shade adapted plant with poor adaptability to high light (> 50%). The novelty of this research is the demonstration of the eco-physiological basis of its light tolerance (conversely, shade adaptation) mechanisms indicated by decreased photosynthetic activity, chlorophyll fluorescence, Chla, Chlb and Car contents and concomitant increase in relative conductivity, MDA and proline contents at high light causing photoinhibition. For artificial propagation of C. nitidissima we recommend growing cuttings below 30% sunlight. For in situ conservation of this valuable, rare and endangered shrub it is necessary to protect its natural habitats.

Carbon budget of sea-ice algae in spring: Evidence of a significant transfer to zooplankton grazers

NASA Astrophysics Data System (ADS)

Michel, C.; Legendre, L.; Ingram, R. G.; Gosselin, M.; Levasseur, M.

1996-08-01

The fate of ice-bottom algae, before and after release from the first-year sea ice into the water column, was assessed during the period of ice-algal growth and decline in Resolute Passage (Canadian Arctic). During spring 1992 (from April to June), algae in the bottom ice layer and those suspended and sinking in the upper water column (top 15 m) were sampled approximately every 4 days. Ice-bottom chlorophyll a reached a maximum concentration of 160 mg m-2 in mid-May, after which it decreased to lower values. In the water column, chlorophyll a concentrations were low until the period of ice-algal decline (˜0.1 mg m-3), with most biomass in the <5-μm fraction. In both the suspended and sinking material, large increases of algal biomass occurred at the beginning of June, following the release of ice-algae into the water column. The input of ice-algal derived carbon to the upper water column and the proportions exported through sinking or remaining in suspension were assessed using a carbon budget for the two periods of ice-algal growth and decline. For each period the output terms closely balanced the input. The carbon budget showed that most of the biomass introduced into the upper water column remained suspended (>65% of total export) and that ice-algae were ingested by under-ice grazers after release from the ice. These results stress the importance of ice algae for pelagic consumers during the early stages of ice melt and show that the transfer of ice algae to higher trophic levels extends beyond the period of maximum algal production in the ice bottom.

Assessment of MODIS-Aqua chlorophyll-a algorithms in coastal and shelf waters of the eastern Arabian Sea

NASA Astrophysics Data System (ADS)

Tilstone, Gavin H.; Lotliker, Aneesh A.; Miller, Peter I.; Ashraf, P. Muhamed; Kumar, T. Srinivasa; Suresh, T.; Ragavan, B. R.; Menon, Harilal B.

2013-08-01

The use of ocean colour remote sensing to facilitate the monitoring of phytoplankton biomass in coastal waters is hampered by the high variability in absorption and scattering from substances other than phytoplankton. The eastern Arabian Sea coastal shelf is influenced by river run-off, winter convection and monsoon upwelling. Bio-optical parameters were measured along this coast from March 2009 to June 2011, to characterise the optical water type and validate three Chlorophyll-a (Chla) algorithms applied to Moderate Resolution Imaging Spectroradiometer on Aqua (MODIS-Aqua) data against in situ measurements. Ocean Colour 3 band ratio (OC3M), Garver-Siegel-Maritorena Model (GSM) and Generalized Inherent Optical Property (GIOP) Chla algorithms were evaluated. OC3M performed better than GSM and GIOP in all regions and overall, was within 11% of in situ Chla. GSM was within 24% of in situ Chla and GIOP on average was 55% lower. OC3M was less affected by errors in remote sensing reflectance Rrs(λ) and by spectral variations in absorption coefficient (aCDOM(λ)) of coloured dissolved organic material (CDOM) and total suspended matter (TSM) compared to the other algorithms. A nine year Chla time series from 2002 to 2011 was generated to assess regional differences between OC3M and GSM. This showed that in the north eastern shelf, maximum Chla occurred during the winter monsoon from December to February, where GSM consistently gave higher Chla compared to OC3M. In the south eastern shelf, maximum Chla occurred in June to July during the summer monsoon upwelling, and OC3M yielded higher Chla compared to GSM. OC3M currently provides the most accurate Chla estimates for the eastern Arabian Sea coastal waters.

What if the Diatoms of the Deep Chlorophyll Maximum Can Ascend?

NASA Astrophysics Data System (ADS)

Villareal, T. A.

2016-02-01

Buoyancy regulation is an integral part of diatom ecology via its role in sinking rates and is fundamental to understanding their distribution and abundance. Numerous studies have documented the effects of size and nutrition on sinking rates. Many pelagic diatoms have low intrinsic sinking rates when healthy and nutrient-replete (< 1-2 meters per day). Physiological control of buoyancy via ion regulation and osmolyte control can easily result in cell sap densities less than seawater, resulting in near-zero sinking rates across a large size spectrum of diatoms as well as positive buoyancy in giant diatoms with their low surface:volume ratio. Ascent by smaller diatoms is much less described although predicted in cells as small as 200 cubic microns. Decreased sedimentation rates have long been linked to formation of layers in the water column, particularly at the low light and nutricline conditions of the deep chlorophyll maximum. The potential for ascending behavior adds an additional layer of complexity by allowing both active depth regulation similar to that observed in flagellated taxa and upward transport by some fraction of deep euphotic zone diatom blooms supported by nutrient injection. In this talk, I review the data documenting positive buoyancy in small diatoms, offer direct visual evidence of ascending behavior in common diatoms typical of both oceanic and coastal zones, and note the characteristics of sinking rate distributions within a single species. Buoyancy control leads to bidirectional movement at similar rates across a wide size spectrum of diatoms although the frequency of ascending behavior may be only a small portion of the individual species' abundance. While much remains to be learned, the paradigm of unidirectional downward movement by diatoms is both inaccurate and an oversimplification.

Effects of Solar Ultraviolet Radiation on the Potential Efficiency of Photosystem II in Leaves of Tropical Plants1

PubMed Central

Krause, G. Heinrich; Schmude, Claudia; Garden, Hermann; Koroleva, Olga Y.; Winter, Klaus

1999-01-01

The effects of solar ultraviolet (UV)-B and UV-A radiation on the potential efficiency of photosystem II (PSII) in leaves of tropical plants were investigated in Panama (9°N). Shade-grown tree seedlings or detached sun leaves from the outer crown of mature trees were exposed for short periods (up to 75 min) to direct sunlight filtered through plastic or glass filters that absorbed either UV-B or UV-A+B radiation, or transmitted the complete solar spectrum. Persistent changes in potential PSII efficiency were monitored by means of the dark-adapted ratio of variable to maximum chlorophyll a fluorescence. In leaves of shade-grown tree seedlings, exposure to the complete solar spectrum resulted in a strong decrease in potential PSII efficiency, probably involving protein damage. A substantially smaller decline in the dark-adapted ratio of variable to maximum chlorophyll a fluorescence was observed when UV-B irradiation was excluded. The loss in PSII efficiency was further reduced by excluding both UV-B and UV-A light. The photoinactivation of PSII was reversible under shade conditions, but restoration of nearly full activity required at least 10 d. Repeated exposure to direct sunlight induced an increase in the pool size of xanthophyll cycle pigments and in the content of UV-absorbing vacuolar compounds. In sun leaves of mature trees, which contained high levels of UV-absorbing compounds, effects of UV-B on PSII efficiency were observed in several cases and varied with developmental age and acclimation state of the leaves. The results show that natural UV-B and UV-A radiation in the tropics may significantly contribute to photoinhibition of PSII during sun exposure in situ, particularly in shade leaves exposed to full sunlight. PMID:10594122

Assimilation of Sea Color Data Into A Three Dimensional Biogeochemical Model: Sensitivity Experiments

NASA Astrophysics Data System (ADS)

Echevin, V.; Levy, M.; Memery, L.

The assimilation of two dimensional sea color data fields into a 3 dimensional coupled dynamical-biogeochemical model is performed using a 4DVAR algorithm. The biogeochemical model includes description of nitrates, ammonium, phytoplancton, zooplancton, detritus and dissolved organic matter. A subset of the biogeochemical model poorly known parameters (for example,phytoplancton growth, mortality,grazing) are optimized by minimizing a cost function measuring misfit between the observations and the model trajectory. Twin experiments are performed with an eddy resolving model of 5 km resolution in an academic configuration. Starting from oligotrophic conditions, an initially unstable baroclinic anticyclone splits into several eddies. Strong vertical velocities advect nitrates into the euphotic zone and generate a phytoplancton bloom. Biogeochemical parameters are perturbed to generate surface pseudo-observations of chlorophyll,which are assimilated in the model in order to retrieve the correct parameter perturbations. The impact of the type of measurement (quasi-instantaneous, daily mean, weekly mean) onto the retrieved set of parameters is analysed. Impacts of additional subsurface measurements and of errors in the circulation are also presented.

A strong summer phytoplankton bloom southeast of Vietnam in 2007, a transitional year from El Niño to La Niña.

PubMed

Zhao, Hui; Zhao, Jian; Sun, Xingli; Chen, Fajin; Han, Guoqi

2018-01-01

Summer upwelling occurs frequently off the southeast Vietnam coast in the western South China Sea (SCS), where summer phytoplankton blooms generally appear during June-August. In this study, we investigate inter-annual variation of Ekman pumping and offshore transport, and its modulation on summer blooms southeast of Vietnam. The results indicate that there are low intensities of summer blooms in El Niño years, under higher sea surface temperatures (SST) and weaker winds. However, a different pattern of monthly chlorophyll a (Chl-a) blooms occurred in summer of 2007, a transitional stage from El Niño to La Niña, with weak (strong) wind and high (low) SST before (after) early July. There is a weak phytoplankton bloom before July 2007 and a strong phytoplankton bloom after July 2007. The abrupt change in the wind intensity may enhance the upwelling associated with Ekman pumping and offshore Ekman transport, bringing more high-nutrient water into the upper layer from the subsurface, and thus leading to an evident Chl-a bloom in the region.

Assessment of the characteristic of nutrients, total metals, and fecal coliform in Sibu Laut River, Sarawak, Malaysia

NASA Astrophysics Data System (ADS)

Soo, Chen-Lin; Ling, Teck-Yee; Lee, Nyanti; Apun, Kasing

2016-03-01

The concentrations of nutrients (nitrogen and phosphorus), total metals, and fecal coliform (FC) coupling with chlorophyll- a (chl- a), 5-day biochemical oxygen demand (BOD5) and other general environmental parameters were evaluated at the sub-surface and near-bottom water columns of 13 stations in the Sibu Laut River during low and high slack waters. The results indicated that inorganic nitrogen (mainly nitrate) was the primary form of nitrogen whereas organic phosphorus was the major form of phosphorus. The abundance of total heavy metals in Sibu Laut River and its tributaries was in the order of Pb < Cu < Zn < Cd. Fecal coliform concentration was relatively low along Sibu Laut River. The shrimp farm effluents contributed a substantial amount of chl- a, BOD5, nutrients, and FC to the receiving creek except for total metals. Nevertheless, the influence was merely noticeable in the intake creek and amended rapidly along Selang Sibu River and brought minimal effects on the Sibu Laut River. Besides, the domestic sewage effluents from villages nearby also contributed a substantial amount of pollutants.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bishop, James K.B.; Wood, Todd

Three Carbon Explorer (CE) floats profiling to kilometer depths in the Southern Ocean tracked dawn-dusk variations of mixing/stratification, particulate organic carbon (POC), and light scattering and sedimentation at 100, 250, and 800 m continuously from January 2002 to April 2003. Data were analyzed in conjunction with contemporaneous satellite winds and chlorophyll and derived subsurface light fields. The CE deployed at 66{sup o}S 172{sup o}W operated in the ice edge zone in absence of light. Two CEs deployed at 55{sup o}S 172{sup o}W recorded wintertime mixing to {approx}400 m, yet observed very different bloom dynamics and sedimentation the following spring. Fourmore » hypotheses are explored. The strongest is that shallow transient stratification of the deep winter mixed layer to shallower than photosynthetic critical depth occurred more frequently in the non-bloom/higher sedimentation case. The lower particle export to 800 m under the bloom was hypothesized to be due to higher interception of sinking carbon by a relatively starved over wintering zooplankton population. In the Southern Ocean surface phytoplankton biomass may counter indicate particle flux at kilometer depths.« less

Spatial Heterogeneity of Ice Cover Sediment and Thickness and Its Effects on Photosynthetically Active Radiation and Chlorophyll-a Distribution: Lake Bonney, Antarctica

NASA Astrophysics Data System (ADS)

Obryk, M.; Doran, P. T.; Priscu, J. C.; Morgan-Kiss, R. M.; Siebenaler, A. G.

2012-12-01

The perennially ice-covered lakes in the McMurdo Dry Valleys, Antarctica have been extensively studied under the Long Term Ecological Research project. But sampling has been spatially restricted due to the logistical difficulty of penetrating the 3-6 m of ice cover. The ice covers restrict wind-driven turbulence and its associated mixing of water, resulting in a unique thermal stratification and a strong vertical gradient of salinity. The permanent ice covers also shade the underlying water column, which, in turn, controls photosynthesis. Here, we present results of a three-dimensional record of lake processes obtained with an autonomous underwater vehicle (AUV). The AUV was deployed at West Lake Bonney, located in Taylor Valley, Dry Valleys, to further understand biogeochemical and physical properties of the Dry Valley lakes. The AUV was equipped with depth, conductivity, temperature, under water photosynthetically active radiation (PAR), turbidity, chlorophyll-and-DOM fluorescence, pH, and REDOX sensors. Measurements were taken over the course of two years in a 100 x 100 meter spaced horizontal sampling grid (and 0.2 m vertical resolution). In addition, the AUV measured ice thickness and collected 200 images looking up through the ice, which were used to quantify sediment distribution. Comparison with high-resolution satellite QuickBird imagery demonstrates a strong correlation between aerial sediment distribution and ice cover thickness. Our results are the first to show the spatial heterogeneity of lacustrine ecosystems in the McMurdo Dry Valleys, significantly improving our understanding of lake processes. Surface sediment is responsible for localized thinning of ice cover due to absorption of solar radiation, which in turn increases total available PAR in the water column. Higher PAR values are negatively correlated with chlorophyll-a, presenting a paradox; historically, long-term studies of PAR and chlorophyll-a have shown positive trends. We hypothesized that this paradox is a result of short-term photoadaptation of phytoplanktonic communities to spatial and temporal variations of PAR within the water column. To test this hypothesis, we established phytoplankton enrichment cultures from depths of maximum primary production (13 m) and tested whether dry valley lake phytoplankton respond to daily variations in controlled light environment. Laboratory-grown cultures exhibited a strong response at 12 hr:12 hr day:night cycle at the level of both photochemistry and chlorophyll biosynthesis, indicating that Lake Bonney possess the ability to quickly respond to changes in their light environment.

A Saponification Method for Chlorophyll Removal from Microalgae Biomass as Oil Feedstock

PubMed Central

Li, Tao; Xu, Jin; Wu, Hualian; Wang, Guanghua; Dai, Shikun; Fan, Jiewei; He, Hui; Xiang, Wenzhou

2016-01-01

Microalgae oil is an optimal feedstock for nutraceutical, pharmaceutical and biodiesel production, but its high levels of chlorophyll limit its large-scale application. To date, few effective approaches have been developed to remove chlorophyll from microalgae oil. The main purpose of this study was to present a preprocessing method of algae oil feedstock (Scenedesmus) to remove chlorophyll by saponification. The results showed that 96% of chlorophyll in biomass was removed. High quality orange transparent oil could be extracted from the chlorophyll reduced biomass. Specifically, the proportion of neutral lipids and saturation levels of fatty acids increased, and the pigments composition became carotenoids-based. The critical parameters of chlorophyll reduced biodiesel conformed to the standards of the USA, China and EU. Sodium copper chlorophyllin could be prepared from the bleaching effluent. The results presented herein offer a useful pathway to improve the quality of microalgae oil and reduce the cost of microalgae biodiesel. PMID:27618070

Global Seasonal Climatologies of Ocean Chlorophyll: Blending In situ and Satellite Data for the CZCS Era

NASA Technical Reports Server (NTRS)

Gregg, Watson W.; Conkright, Margarita E.

1999-01-01

The historical archives of in situ (National Oceanographic Data Center) and satellite (Coastal Zone Color Scanner) chlorophyll data were combined using the blended analysis method of Reynolds [1988] in an attempt to construct an improved climatological seasonal representation of global chlorophyll distributions. The results of the blended analysis differed dramatically from the CZCS representation: global chlorophyll estimates increased 8-35% in the blended analysis depending upon season. Regional differences were even larger, up to 140% in the equatorial Indian Ocean in summer (during the southwest monsoon). Tropical Pacific chlorophyll values increased 25-41%. The results suggested that the CZCS generally underestimates chlorophyll. Regional and seasonal differences in the blended analysis were sufficiently large as to produce a different representation of global chlorophyll distributions than otherwise inferred from CZCS data alone. Analyses of primary production and biogeochemical cycles may be substantially impacted by these results.

A Saponification Method for Chlorophyll Removal from Microalgae Biomass as Oil Feedstock.

PubMed

Li, Tao; Xu, Jin; Wu, Hualian; Wang, Guanghua; Dai, Shikun; Fan, Jiewei; He, Hui; Xiang, Wenzhou

2016-09-07

Microalgae oil is an optimal feedstock for nutraceutical, pharmaceutical and biodiesel production, but its high levels of chlorophyll limit its large-scale application. To date, few effective approaches have been developed to remove chlorophyll from microalgae oil. The main purpose of this study was to present a preprocessing method of algae oil feedstock (Scenedesmus) to remove chlorophyll by saponification. The results showed that 96% of chlorophyll in biomass was removed. High quality orange transparent oil could be extracted from the chlorophyll reduced biomass. Specifically, the proportion of neutral lipids and saturation levels of fatty acids increased, and the pigments composition became carotenoids-based. The critical parameters of chlorophyll reduced biodiesel conformed to the standards of the USA, China and EU. Sodium copper chlorophyllin could be prepared from the bleaching effluent. The results presented herein offer a useful pathway to improve the quality of microalgae oil and reduce the cost of microalgae biodiesel.

A novel chlorophyll solar cell

NASA Astrophysics Data System (ADS)

Ludlow, J. C.

The photosynthetic process is reviewed in order to produce a design for a chlorophyll solar cell. In a leaf, antenna chlorophyll absorbs light energy and conducts it to an energy trap composed of a protein and two chlorophyll molecules, which perform the oxidation-reduction chemistry. The redox potential of the trap changes from 0.4 to -0.6 V, which is sufficient to reduce nearby molecules with redox potentials in that range. The reduction occurs by transfer of an electron, and a chlorophyll solar cell would direct the transferred electron to a current carrier. Chlorophyll antenna and traps are placed on a metallic support immersed in an electron acceptor solution, and resulting electrons from exposure to light are gathered by a metallic current collector. Spinach chlorophyll extracted, purified, and applied in a cell featuring a Pt collector and an octane water emulsion resulted in intensity independent voltages.

Chlorophyll Catabolites – Chemical and Structural Footprints of a Fascinating Biological Phenomenon

PubMed Central

Moser, Simone; Müller, Thomas; Oberhuber, Michael; Kräutler, Bernhard

2009-01-01

Twenty years ago, the molecular basis for the seasonal disappearance of chlorophyll was still enigmatic. In the meantime, our knowledge on chlorophyll breakdown has grown considerably. As outlined here, it has been possible to decipher the basic transformations involved in natural chlorophyll breakdown by identification of chlorophyll catabolites in higher plants, and with the help of the synthesis of (putative) catabolic intermediates. In vascular plants, chlorophyll breakdown typically converts the green plant pigments efficiently into colorless and non-fluorescent tetrapyrroles. It involves colored intermediates only fleetingly and in an (elusive) enzyme-bound form. The non-fluorescent chlorophyll catabolites accumulate in the vacuoles of degreened leaves and are considered the products, primarily, of a detoxification process. However, they are effective antioxidants, and may thus also have physiologically beneficial chemical properties.(© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2009) PMID:21037946

A study on distribution of chlorophyll-a in the coastal waters of Anzali Port, south Caspian Sea

NASA Astrophysics Data System (ADS)

Jamshidi, S.; Abu Bakar, N. Bin

2011-02-01

Phytoplankton as chlorophyll-containing organisms is the first step of production in most marine processes and food chains. Nutrient enhancement in the seawater due to the discharge of agricultural, industrial, and urban wastes threatens the Caspian Sea environment. Increasing concentrations of chlorophyll-a in seawater, in reaction to the elevation of nutrient supply can have severely damaging effects on the marine environment of the Caspian. In this research, seasonal variability of the chlorophyll-a concentrations in the western part of the southern coastal waters of the Caspian Sea near Iranian coast was examined using field observations. The data showed that the most chlorophyll-a was found below the sea surface. The thermal stratification in water column and outflow of the Anzali Lagoon affect the chlorophyll-a concentrations in the region. Concentrations of chlorophyll-a were recorded in midsummer in a range of 0.2-3.4 mg m-3.

Comparison of point-source pollutant loadings to soil and groundwater for 72 chemical substances.

PubMed

Yu, Soonyoung; Hwang, Sang-Il; Yun, Seong-Taek; Chae, Gitak; Lee, Dongsu; Kim, Ki-Eun

2017-11-01

Fate and transport of 72 chemicals in soil and groundwater were assessed by using a multiphase compositional model (CompFlow Bio) because some of the chemicals are non-aqueous phase liquids or solids in the original form. One metric ton of chemicals were assumed to leak in a stylized facility. Scenarios of both surface spills and subsurface leaks were considered. Simulation results showed that the fate and transport of chemicals above the water table affected the fate and transport of chemicals below the water table, and vice versa. Surface spill scenarios caused much less concentrations than subsurface leak scenarios because leaching amounts into the subsurface environment were small (at most 6% of the 1 t spill for methylamine). Then, simulation results were applied to assess point-source pollutant loadings to soil and groundwater above and below the water table, respectively, by multiplying concentrations, impact areas, and durations. These three components correspond to the intensity of contamination, mobility, and persistency in the assessment of pollutant loading, respectively. Assessment results showed that the pollutant loadings in soil and groundwater were linearly related (r 2  = 0.64). The pollutant loadings were negatively related with zero-order and first-order decay rates in both soil (r = - 0.5 and - 0.6, respectively) and groundwater (- 1.0 and - 0.8, respectively). In addition, this study scientifically defended that the soil partitioning coefficient (K d ) significantly affected the pollutant loadings in soil (r = 0.6) and the maximum masses in groundwater (r = - 0.9). However, K d was not a representative factor for chemical transportability unlike the expectation in chemical ranking systems of soil and groundwater pollutants. The pollutant loadings estimated using a physics-based hydrogeological model provided a more rational ranking for exposure assessment, compared to the summation of persistency and transportability scores in the chemical ranking systems. In the surface spill scenario, the pollutant loadings were zeros for all chemicals, except methylamine to soil whose pollutant loading was smaller than that in the subsurface leak scenario by 4 orders of magnitude. The maximum mass and the average mass multiplied by duration in soil greatly depended on leaching fluxes (r = 1.0 and 0.9, respectively), while the effect of leaching fluxes diminished below the water table. The contribution of this work is that a physics-based numerical model was used to quantitatively compare the subsurface pollutant loading in a chemical accident for 72 chemical substances, which can scientifically defend a simpler and more qualitative assessment of pollutant loadings. Besides, this study assessed pollutant loadings to soil (unsaturated zone) and groundwater (saturated zone) all together and discussed their interactions.

Calibrations between chlorophyll meter values and chlorophyll contents vary as the result of differences in leaf structure

USDA-ARS?s Scientific Manuscript database

In order to relate leaf chlorophyll meter values with total leaf chlorophyll contents (µg cm-2), calibration equations are established with measured data on leaves. Many studies have documented differences in calibration equations using different species and using different growing conditions for th...

A review of ocean chlorophyll algorithms and primary production models

NASA Astrophysics Data System (ADS)

Li, Jingwen; Zhou, Song; Lv, Nan

2015-12-01

This paper mainly introduces the five ocean chlorophyll concentration inversion algorithm and 3 main models for computing ocean primary production based on ocean chlorophyll concentration. Through the comparison of five ocean chlorophyll inversion algorithm, sums up the advantages and disadvantages of these algorithm,and briefly analyzes the trend of ocean primary production model.

Modeling the relationship between extractable chlorophyll and SPAD-502 readings for endangered plant species research

Treesearch

Tracy S. Hawkins; Emile S. Gardiner; Greg S. Comer

2009-01-01

Handheld chlorophyll meters have proven to be useful tools for rapid, nondestructive assessment of chlorophyll and nutrient status in various agricultural and arborescent plant species. We proposed that a SPAD-502 chlorophyll meter would provide valuable information when monitoring life cycle changes and intraspecific variation in...

Overexpression of Protochlorophyllide Oxidoreductase C Regulates Oxidative Stress in Arabidopsis

PubMed Central

Pattanayak, Gopal K.; Tripathy, Baishnab C.

2011-01-01

Light absorbed by colored intermediates of chlorophyll biosynthesis is not utilized in photosynthesis; instead, it is transferred to molecular oxygen, generating singlet oxygen (1O2). As there is no enzymatic detoxification mechanism available in plants to destroy 1O2, its generation should be minimized. We manipulated the concentration of a major chlorophyll biosynthetic intermediate i.e., protochlorophyllide in Arabidopsis by overexpressing the light-inducible protochlorophyllide oxidoreductase C (PORC) that effectively phototransforms endogenous protochlorophyllide to chlorophyllide leading to minimal accumulation of the photosensitizer protochlorophyllide in light-grown plants. In PORC overexpressing (PORCx) plants exposed to high-light, the 1O2 generation and consequent malonedialdehyde production was minimal and the maximum quantum efficiency of photosystem II remained unaffected demonstrating that their photosynthetic apparatus and cellular organization were intact. Further, PORCx plants treated with 5-aminolevulinicacid when exposed to light, photo-converted over-accumulated protochlorophyllide to chlorophyllide, reduced the generation of 1O2 and malonedialdehyde production and reduced plasma membrane damage. So PORCx plants survived and bolted whereas, the 5-aminolevulinicacid-treated wild-type plants perished. Thus, overexpression of PORC could be biotechnologically exploited in crop plants for tolerance to 1O2-induced oxidative stress, paving the use of 5-aminolevulinicacid as a selective commercial light-activated biodegradable herbicide. Reduced protochlorophyllide content in PORCx plants released the protochlorophyllide-mediated feed-back inhibition of 5-aminolevulinicacid biosynthesis that resulted in higher 5-aminolevulinicacid production. Increase of 5-aminolevulinicacid synthesis upregulated the gene and protein expression of several downstream chlorophyll biosynthetic enzymes elucidating a regulatory net work of expression of genes involved in 5-aminolevulinicacid and tetrapyrrole biosynthesis. PMID:22031838

Chlorophyll-Derivative Modulation of Rhodopsin Signaling Properties through Evolutionarily Conserved Interaction Pathways

PubMed Central

Woods, Kristina N.; Pfeffer, Jürgen; Klein-Seetharaman, Judith

2017-01-01

Retinal is the light-absorbing chromophore that is responsible for the activation of visual pigments and light-driven ion pumps. Evolutionary changes in the intermolecular interactions of the retinal with specific amino acids allow for adaptation of the spectral characteristics, referred to as spectral tuning. However, it has been proposed that a specific species of dragon fish has bypassed the adaptive evolutionary process of spectral tuning and replaced it with a single evolutionary event: photosensitization of rhodopsin by chlorophyll derivatives. Here, by using a combination of experimental measurements and computational modeling to probe retinal-receptor interactions in rhodopsin, we show how the binding of the chlorophyll derivative, chlorin-e6 (Ce6) in the intracellular domain (ICD) of the receptor allosterically excites G-protein coupled receptor class A (GPCR-A) conserved long-range correlated fluctuations that connect distant parts of the receptor. These long-range correlated motions are associated with regulating the dynamics and intermolecular interactions of specific amino acids in the retinal ligand-binding pocket that have been associated with shifts in the absorbance peak maximum (λmax) and hence, spectral sensitivity of the visual system. Moreover, the binding of Ce6 affects the overall global properties of the receptor. Specifically, we find that Ce6-induced dynamics alter the thermal stability of rhodopsin by adjusting hydrogen-bonding interactions near the receptor active-site that consequently also influences the intrinsic conformational equilibrium of the receptor. Due to the conservation of the ICD residues amongst different receptors in this class and the fact that all GPCR-A receptors share a common mechanism of activation, it is possible that the allosteric associations excited in rhodopsin with Ce6 binding are a common feature in all class A GPCRs. PMID:29312953

Towards efficient photosynthesis: overexpression of Zea mays phosphoenolpyruvate carboxylase in Arabidopsis thaliana.

PubMed

Kandoi, Deepika; Mohanty, Sasmita; Govindjee; Tripathy, Baishnab C

2016-12-01

Plants with C4 photosynthesis are efficient in carbon assimilation and have an advantage over C3 photosynthesis. In C4 photosynthesis, the primary CO 2 fixation is catalyzed by phosphoenolpyruvate carboxylase (PEPC). Here, we show that overexpression of Zea mays PEPC cDNA, under the control of 35 S promoter, in Arabidopsis thaliana resulted in ~7-10 fold higher protein abundance and ~7-10 fold increase in PEPC activity in the transgenic lines than that in the vector control. We suggest that overexpression of PEPC played an anaplerotic role to increase the supply of 4-carbon carboxylic acids, which provided carbon skeletons for increased amino acid and protein synthesis. Higher protein content must have been responsible for increased metabolic processes including chlorophyll biosynthesis, photosynthesis, and respiration. Consequently, the PEPC-overexpressed transgenic plants had higher chlorophyll content, enhanced electron transport rate (ETR), lower non-photochemical quenching (NPQ) of chlorophyll a fluorescence, and a higher performance index (PI) than the vector control. Consistent with these observations, the rate of CO 2 assimilation, the starch content, and the dry weight of PEPC-overexpressed plants increased by 14-18 %, 10-18 %, and 6.5-16 %, respectively. Significantly, transgenics were tolerant to salt stress as they had increased ability to synthesize amino acids, including the osmolyte proline. NaCl (150 mM)-treated transgenic plants had higher variable to maximum Chl a fluorescence (F v /F m ) ratio, higher PI, higher ETR, and lower NPQ than the salt-treated vector controls. These results suggest that expression of C4 photosynthesis enzyme(s) in a C3 plant can improve its photosynthetic capacity with enhanced tolerance to salinity stress.

Detecting changes resulting from human pressure in a naturally quick-changing and heterogeneous environment: Spatial and temporal scales of variability in coastal lagoons

NASA Astrophysics Data System (ADS)

Pérez-Ruzafa, A.; Marcos, C.; Pérez-Ruzafa, I. M.; Barcala, E.; Hegazi, M. I.; Quispe, J.

2007-10-01

To detect changes in ecosystems due to human impact, experimental designs must include replicates at the appropriate scale to avoid pseudoreplication. Although coastal lagoons, with their highly variable environmental factors and biological assemblages, are relatively well-studied systems, very little is known about their natural scales of variation. In this study, we investigate the spatio-temporal scales of variability in the Mar Menor coastal lagoon (SE Spain) using structured hierarchical sampling designs, mixed and permutational multi-variate analyses of variance, and ordination multi-variate analyses applied to hydrographical parameters, nutrients, chlorophyll a and ichthyoplankton in the water column, and to macrophyte and fish benthic assemblages. Lagoon processes in the Mar Menor show heterogeneous patterns at different temporal and spatial scales. The water column characteristics (including nutrient concentration) showed small-scale spatio-temporal variability, from 10 0 to 10 1 km and from fortnightly to seasonally. Biological features (chlorophyll a concentration and ichthyoplankton assemblage descriptors) showed monthly changes and spatial patterns at the scale of 10 0 (chlorophyll a) - 10 1 km (ichthyoplankton). Benthic assemblages (macrophytes and fishes) showed significant differences between types of substrates in the same locality and between localities, according to horizontal gradients related with confinement in the lagoon, at the scale of 10 0-10 1 km. The vertical zonation of macrophyte assemblages (at scales of 10 1-10 2 cm) overlaps changes in substrata and horizontal gradients. Seasonal patterns in vegetation biomass were not significant, but the significant interaction between Locality and Season indicated that the seasons of maximum and minimum biomass depend on local environmental conditions. Benthic fish assemblages showed no significant patterns at the monthly scale but did show seasonal patterns.

Twisting a β-Carotene, an Adaptive Trick from Nature for Dissipating Energy during Photoprotection*

PubMed Central

Sobotka, Roman; Kish, Elizabeth; Shukla, Mahendra Kumar; Pascal, Andrew A.; Polívka, Tomáš; Robert, Bruno

2017-01-01

Cyanobacteria possess a family of one-helix high light-inducible proteins (Hlips) that are homologous to light-harvesting antenna of plants and algae. An Hlip protein, high light-inducible protein D (HliD) purified as a small complex with the Ycf39 protein is evaluated using resonance Raman spectroscopy. We show that the HliD binds two different β-carotenes, each present in two non-equivalent binding pockets with different conformations, having their (0,0) absorption maxima at 489 and 522 nm, respectively. Both populations of β-carotene molecules were in all-trans configuration and the absorption position of the farthest blue-shifted β-carotene was attributed entirely to the polarizability of the environment in its binding pocket. In contrast, the absorption maximum of the red-shifted β-carotene was attributed to two different factors: the polarizability of the environment in its binding pocket and, more importantly, to the conformation of its β-rings. This second β-carotene has highly twisted β-rings adopting a flat conformation, which implies that the effective conjugation length N is extended up to 10.5 modifying the energetic levels. This increase in N will also result in a lower S1 energy state, which may provide a permanent energy dissipation channel. Analysis of the carbonyl stretching region for chlorophyll a excitations indicates that the HliD binds six chlorophyll a molecules in five non-equivalent binding sites, with at least one chlorophyll a presenting a slight distortion to its macrocycle. The binding modes and conformations of HliD-bound pigments are discussed with respect to the known structures of LHCII and CP29. PMID:27994060

Surface ocean carbon dioxide during the Atlantic Meridional Transect (1995-2013); evidence of ocean acidification

NASA Astrophysics Data System (ADS)

Kitidis, Vassilis; Brown, Ian; Hardman-Mountford, Nicholas; Lefèvre, Nathalie

2017-11-01

Here we present more than 21,000 observations of carbon dioxide fugacity in air and seawater (fCO2) along the Atlantic Meridional Transect (AMT) programme for the period 1995-2013. Our dataset consists of 11 southbound and 2 northbound cruises in boreal autumn and spring respectively. Our paper is primarily focused on change in the surface-ocean carbonate system during southbound cruises. We used observed fCO2 and total alkalinity (TA), derived from salinity and temperature, to estimate dissolved inorganic carbon (DIC) and pH (total scale). Using this approach, estimated pH was consistent with spectrophotometric measurements carried out on 3 of our cruises. The AMT cruises transect a range of biogeographic provinces where surface Chlorophyll-α spans two orders of magnitude (mesotrophic high latitudes to oligotrophic subtropical gyres). We found that surface Chlorophyll-α was negatively correlated with fCO2, but that the deep chlorophyll maximum was not a controlling variable for fCO2. Our data show clear evidence of ocean acidification across 100° of latitude in the Atlantic Ocean. Over the period 1995-2013 we estimated annual rates of change in: (a) sea surface temperature of 0.01 ± 0.05 °C, (b) seawater fCO2 of 1.44 ± 0.84 μatm, (c) DIC of 0.87 ± 1.02 μmol per kg and (d) pH of -0.0013 ± 0.0009 units. Monte Carlo simulations propagating the respective analytical uncertainties showed that the latter were < 5% of the observed trends. Seawater fCO2 increased at the same rate as atmospheric CO2.

Characterization of the low-temperature triplet state of chlorophyll in photosystem II core complexes: Application of phosphorescence measurements and Fourier transform infrared spectroscopy.

PubMed

Zabelin, Alexey A; Neverov, Konstantin V; Krasnovsky, Alexander A; Shkuropatova, Valentina A; Shuvalov, Vladimir A; Shkuropatov, Anatoly Ya

2016-06-01

Phosphorescence measurements at 77 K and light-induced FTIR difference spectroscopy at 95 K were applied to study of the triplet state of chlorophyll a ((3)Chl) in photosystem II (PSII) core complexes isolated from spinach. Using both methods, (3)Chl was observed in the core preparations with doubly reduced primary quinone acceptor QA. The spectral parameters of Chl phosphorescence resemble those in the isolated PSII reaction centers (RCs). The main spectral maximum and the lifetime of the phosphorescence corresponded to 955±1 nm and of 1.65±0.05 ms respectively; in the excitation spectrum, the absorption maxima of all core complex pigments (Chl, pheophytin a (Pheo), and β-carotene) were observed. The differential signal at 1667(-)/1628(+)cm(-1) reflecting a downshift of the stretching frequency of the 13(1)-keto C=O group of Chl was found to dominate in the triplet-minus-singlet FTIR difference spectrum of core complexes. Based on FTIR results and literature data, it is proposed that (3)Chl is mostly localized on the accessory chlorophyll that is in triplet equilibrium with P680. Analysis of the data suggests that the Chl triplet state responsible for the phosphorescence and the FTIR difference spectrum is mainly generated due to charge recombination in the reaction center radical pair P680(+)PheoD1(-), and the energy and temporal parameters of this triplet state as well as the molecular environment and interactions of the triplet-bearing Chl molecule are similar in the PSII core complexes and isolated PSII RCs. Copyright © 2016 Elsevier B.V. All rights reserved.

Effects of water stress and light intensity on chlorophyll fluorescence parameters and pigments of Aloe vera L.

PubMed

Hazrati, Saeid; Tahmasebi-Sarvestani, Zeinolabedin; Modarres-Sanavy, Seyed Ali Mohammad; Mokhtassi-Bidgoli, Ali; Nicola, Silvana

2016-09-01

Aloe vera L. is one of the most important medicinal plants in the world. In order to determine the effects of light intensity and water deficit stress on chlorophyll (Chl) fluorescence and pigments of A. vera, a split-plot in time experiment was laid out in a randomized complete block design with four replications in a research greenhouse. The factorial combination of three light intensities (50, 75 and 100% of sunlight) and four irrigation regimes (irrigation after depleting 20, 40, 60 and 80% of soil water content) were considered as main factors. Sampling time was considered as sub factor. The first, second and third samplings were performed 90, 180 and 270 days after imposing the treatments, respectively. The results demonstrated that the highest light intensity and the severe water stress decreased maximum fluorescence (Fm), variable fluorescence (Fv)/Fm, quantum yield of PSII photochemistry (ФPSII), Chl and photochemical quenching (qP) but increased non-photochemical quenching (NPQ), minimum fluorescence (F0) and Anthocyanin (Anth). Additionally, the highest Fm, Fv/Fm, ФPSII and qP and the lowest NPQ and F0 were observed when 50% of sunlight was blocked and irrigation was done after 40% soil water depletion. Irradiance of full sunlight and water deficit stress let to the photoinhibition of photosynthesis, as indicated by a reduced quantum yield of PSII, ФPSII, and qP, as well as higher NPQ. Thus, chlorophyll florescence measurements provide valuable physiological data. Close to half of total solar radiation and irrigation after depleting 40% of soil water content were selected as the most efficient treatments. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

The effect of calcium chloride on growth, photosynthesis, and antioxidant responses of Zoysia japonica under drought conditions.

PubMed

Xu, Chengbin; Li, Xuemei; Zhang, Lihong

2013-01-01

Few attempts have been made to study the alleviating effects of signal molecules on zoysiagrass (Zoysiajaponica) under drought stress. Calcium chloride has been shown to ameliorate the adverse effects of drought stress on many plants. It is necessary to investigate how to enhance drought tolerance of zoysiagrass using calcium chloride. The study elucidated the effects of calcium chloride on zoysiagrass under drought conditions by investigating the following parameters: biomass, chlorophyll (Chl) content, net photosynthetic rate (Pn), chlorophyll fluorescence, antioxidant enzymes, proline content, and malondialdehyde (MDA) content. Experimental conditions consisted of an aqueous CaCl2 solution at 5, 10, and 20 mM sprayed on zoysiagrass leaves for 3 d, following by an inducement of drought conditions by withholding water for 16 d. Under drought conditions, all CaCl2 pretreatments were found to increase the above-ground fresh biomass, as well as below-ground fresh and dry biomass. The resulting Chl (a, b, a+b) contents of the 5 and 10 mM CaCl2 pretreatment groups were higher than those of the control. In the later stages of drought conditions, the chlorophyll fluorescence parameter Fv/Fm was higher in leaves treated with 10 mM CaCl2 than in the leaves of the other two treatment groups. Zoysiagrass pretreated with 10 mM CaCl2 possessed both the maximum observed Pn and antioxidant enzyme activities. Meanwhile, lower MDA and proline contents were recorded in the plants pretreated with 5 and 10 mM CaCl2 under drought conditions. As a whole, the drought tolerance of zoysiagrass was improved to some extent by the application of a moderate calcium concentration.

Phytoplankton class-specific primary production in the world's oceans: Seasonal and interannual variability from satellite observations

NASA Astrophysics Data System (ADS)

Uitz, Julia; Claustre, Hervé; Gentili, Bernard; Stramski, Dariusz

2010-09-01

We apply an innovative approach to time series data of surface chlorophyll from satellite observations with SeaWiFS (Sea-viewing Wide Field-of-view Sensor) to estimate the primary production associated with three major phytoplankton classes (micro-, nano-, and picophytoplankton) within the world's oceans. Statistical relationships, determined from an extensive in situ database of phytoplankton pigments, are used to infer class-specific vertical profiles of chlorophyll a concentration from satellite-derived surface chlorophyll a. This information is combined with a primary production model and class-specific photophysiological parameters to compute global seasonal fields of class-specific primary production over a 10-year period from January 1998 through December 2007. Microphytoplankton (mostly diatoms) appear as a major contributor to total primary production in coastal upwelling systems (70%) and temperate and subpolar regions (50%) during the spring-summer season. The contribution of picophytoplankton (e.g., prokaryotes) reaches maximum values (45%) in subtropical oligotrophic gyres. Nanophytoplankton (e.g., prymnesiophytes) provide a ubiquitous, substantial contribution (30-60%). Annual global estimates of class-specific primary production amount to 15 Gt C yr-1 (32% of total), 20 Gt C yr-1 (44%) and 11 Gt C yr-1 (24%) for micro-, nano-, and picophytoplankton, respectively. The analysis of interannual variations revealed large anomalies in class-specific primary production as compared to the 10-year mean cycle in both the productive North Atlantic basin and the more stable equatorial Pacific upwelling. Microphytoplankton show the largest range of variability of the three phytoplankton classes on seasonal and interannual time scales. Our results contribute to an understanding and quantification of carbon cycle in the ocean.

Wheat cultivars selected for high Fv /Fm under heat stress maintain high photosynthesis, total chlorophyll, stomatal conductance, transpiration and dry matter.

PubMed

Sharma, Dew Kumari; Andersen, Sven Bode; Ottosen, Carl-Otto; Rosenqvist, Eva

2015-02-01

The chlorophyll fluorescence parameter Fv /Fm reflects the maximum quantum efficiency of photosystem II (PSII) photochemistry and has been widely used for early stress detection in plants. Previously, we have used a three-tiered approach of phenotyping by Fv /Fm to identify naturally existing genetic variation for tolerance to severe heat stress (3 days at 40°C in controlled conditions) in wheat (Triticum aestivum L.). Here we investigated the performance of the previously selected cultivars (high and low group based on Fv /Fm value) in terms of growth and photosynthetic traits under moderate heat stress (1 week at 36/30°C day/night temperature in greenhouse) closer to natural heat waves in North-Western Europe. Dry matter accumulation after 7 days of heat stress was positively correlated to Fv /Fm . The high Fv /Fm group maintained significantly higher total chlorophyll and net photosynthetic rate (PN ) than the low group, accompanied by higher stomatal conductance (gs ), transpiration rate (E) and evaporative cooling of the leaf (ΔT). The difference in PN between the groups was not caused by differences in PSII capacity or gs as the variation in Fv /Fm and intracellular CO2 (Ci ) was non-significant under the given heat stress. This study validated that our three-tiered approach of phenotyping by Fv /Fm performed under increasing severity of heat was successful in identifying wheat cultivars differing in photosynthesis under moderate and agronomically more relevant heat stress. The identified cultivars may serve as a valuable resource for further studies to understand the physiological mechanisms underlying the genetic variability in heat sensitivity of photosynthesis. © 2014 Scandinavian Plant Physiology Society.

Hidden Markov models reveal complexity in the diving behaviour of short-finned pilot whales

PubMed Central

Quick, Nicola J.; Isojunno, Saana; Sadykova, Dina; Bowers, Matthew; Nowacek, Douglas P.; Read, Andrew J.

2017-01-01

Diving behaviour of short-finned pilot whales is often described by two states; deep foraging and shallow, non-foraging dives. However, this simple classification system ignores much of the variation that occurs during subsurface periods. We used multi-state hidden Markov models (HMM) to characterize states of diving behaviour and the transitions between states in short-finned pilot whales. We used three parameters (number of buzzes, maximum dive depth and duration) measured in 259 dives by digital acoustic recording tags (DTAGs) deployed on 20 individual whales off Cape Hatteras, North Carolina, USA. The HMM identified a four-state model as the best descriptor of diving behaviour. The state-dependent distributions for the diving parameters showed variation between states, indicative of different diving behaviours. Transition probabilities were considerably higher for state persistence than state switching, indicating that dive types occurred in bouts. Our results indicate that subsurface behaviour in short-finned pilot whales is more complex than a simple dichotomy of deep and shallow diving states, and labelling all subsurface behaviour as deep dives or shallow dives discounts a significant amount of important variation. We discuss potential drivers of these patterns, including variation in foraging success, prey availability and selection, bathymetry, physiological constraints and socially mediated behaviour. PMID:28361954

Dissolved phosphorus retention of light-weight expanded shale and masonry sand used in subsurface flow treatment wetlands.

PubMed

Forbes, Margaret G; Dickson, Kenneth R; Golden, Teresa D; Hudak, Paul; Doyle, Robert D

2004-02-01

Using surface flow constructed wetlands for long-term phosphorus (P) retention presents a challenge due to the fact that P is stored primarily in the sediments. Subsurface flow wetlands have the potential to greatly increase P retention; however, the substrate needs to have both high hydraulic conductivity and high P sorption capacity. The objective of our study was to assess the P retention capacity of two substrates, masonry sand and lightweight expanded shale. We used sorption/desorption isotherms, flow-through column experiments, and pilot-scale wetlands to quantify P retained from treated municipal wastewater. Langmuir sorption isotherms predicted that the expanded shale has a maximum sorption capacity of 971 mg/kg and the masonry sand 58.8 mg/kg. In column desorption and column flow-through experiments, the masonry sand desorbed P when exposed to dilute P solutions. The expanded shale, however, had very little desorption and phosphorus did not break through the columns during our experiment. In pilot cells, masonry sand retained (mean +/- standard deviation) 45 +/- 62 g P/m2/yr and expanded shale retained 164 +/- 110 g P/m2/yr. We conclude that only the expanded shale would be a suitable substrate for retaining P in a subsurface flow wetland.

Effect of subsurface drainage on runoff and sediment yield from an agricultural watershed in western Oregon, U.S.A.

NASA Astrophysics Data System (ADS)

Istok, J. D.; Kling, G. F.

1983-09-01

Rainfall, watershed runoff and suspended-sediment concentrations for three small watersheds (0.46, 1.4 and 6.0 ha in size) were measured continuously for four winter rainfall seasons. The watersheds were fall-planted to winter wheat and were located on the hilly western margins of the Willamette Valley, Oregon. Following two rainfall seasons of data collection, a subsurface drainage system (consisting of a patterned arrangement of 10-cm plastic tubing at a depth of 1.0 m and a spacing of 12 m) was installed on the 1.4-ha watershed (watershed 2). Perched water tables were lowered and seepage was reduced on watershed 2 following the installation of the drainage system. The reductions were quantified with a water-table index (cumulative integrated excess). Watershed runoff and sediment yield from watershed 2 were decreased by ˜65 and ˜55%, respectively. These reductions were estimated from double mass curves and by statistical regression on a set of hydrograph variables. Maximum flow and average flow rates were decreased and the time from the beginning of a storm to the peak flow (lag time) increased. It is concluded that subsurface drainage can be an effective management practice for erosion control in western Oregon.

Long-Term Hydrologic Impacts of Controlled Drainage Using DRAINMOD

NASA Astrophysics Data System (ADS)

Saadat, S.; Bowling, L. C.; Frankenberger, J.

2017-12-01

Controlled drainage is a management strategy designed to mitigate water quality issues caused by subsurface drainage but it may increase surface ponding and runoff. To improve controlled drainage system management, a long-term and broader study is needed that goes beyond the experimental studies. Therefore, the goal of this study was to parametrize the DRAINMOD field-scale, hydrologic model for the Davis Purdue Agricultural Center located in Eastern Indiana and to predict the subsurface drain flow and surface runoff and ponding at this research site. The Green-Ampt equation was used to characterize the infiltration, and digital elevation models (DEMs) were used to estimate the maximum depressional storage as the surface ponding parameter inputs to DRAINMOD. Hydraulic conductivity was estimated using the Hooghoudt equation and the measured drain flow and water table depths. Other model inputs were either estimated or taken from the measurements. The DRAINMOD model was calibrated and validated by comparing model predictions of subsurface drainage and water table depths with field observations from 2012 to 2016. Simulations based on the DRAINMOD model can increase understanding of the environmental and hydrological effects over a broader temporal and spatial scale than is possible using field-scale data and this is useful for developing management recommendations for water resources at field and watershed scales.

Nondestructive and intuitive determination of circadian chlorophyll rhythms in soybean leaves using multispectral imaging

PubMed Central

Pan, Wen-Juan; Wang, Xia; Deng, Yong-Ren; Li, Jia-Hang; Chen, Wei; Chiang, John Y.; Yang, Jian-Bo; Zheng, Lei

2015-01-01

The circadian clock, synchronized by daily cyclic environmental cues, regulates diverse aspects of plant growth and development and increases plant fitness. Even though much is known regarding the molecular mechanism of circadian clock, it remains challenging to quantify the temporal variation of major photosynthesis products as well as their metabolic output in higher plants in a real-time, nondestructive and intuitive manner. In order to reveal the spatial-temporal scenarios of photosynthesis and yield formation regulated by circadian clock, multispectral imaging technique has been employed for nondestructive determination of circadian chlorophyll rhythms in soybean leaves. By utilizing partial least square regression analysis, the determination coefficients R2, 0.9483 for chlorophyll a and 0.8906 for chlorophyll b, were reached, respectively. The predicted chlorophyll contents extracted from multispectral data showed an approximately 24-h rhythm which could be entrained by external light conditions, consistent with the chlorophyll contents measured by chemical analyses. Visualization of chlorophyll map in each pixel offers an effective way to analyse spatial-temporal distribution of chlorophyll. Our results revealed the potentiality of multispectral imaging as a feasible nondestructive universal assay for examining clock function and robustness, as well as monitoring chlorophyll a and b and other biochemical components in plants. PMID:26059057

Identification of a Chlorophyll Dephytylase Involved in Chlorophyll Turnover in Arabidopsis[OPEN

PubMed Central

2016-01-01

Chlorophyll turns over in green organs during photosystem repair and is salvaged via de- and rephytylation, but the enzyme involved in dephytylation is unknown. We have identified an Arabidopsis thaliana thylakoid protein with a putative hydrolase domain that can dephytylate chlorophyll in vitro and in vivo. The corresponding locus, CHLOROPHYLL DEPHYTYLASE1 (CLD1), was identified by mapping a semidominant, heat-sensitive, missense allele (cld1-1). CLD1 is conserved in oxygenic photosynthetic organisms, sharing structural similarity with pheophytinase, which functions in chlorophyll breakdown during leaf senescence. Unlike pheophytinase, CLD1 is predominantly expressed in green organs and can dephytylate chlorophyll in vitro. The specific activity is significantly higher for the mutant protein encoded by cld1-1 than the wild-type enzyme, consistent with the semidominant nature of the cld1-1 mutation. Supraoptimal CLD1 activities in cld1-1 mutants and transgenic seedlings led to the proportional accumulation of chlorophyllides derived from chlorophyll dephytylation after heat shock, which resulted in light-dependent cotyledon bleaching. Reducing CLD1 expression diminished thermotolerance and the photochemical efficiency of photosystem II under prolonged moderate heat stress. Taken together, our results suggest that CLD1 is the long-sought enzyme for removing the phytol chain from chlorophyll during its turnover at steady state within the chloroplast. PMID:27920339

The effect of shade on chlorophyll and anthocyanin content of upland red rice

NASA Astrophysics Data System (ADS)

Muhidin; Syam'un, E.; Kaimuddin; Musa, Y.; Sadimantara, G. R.; Usman; Leomo, S.; Rakian, T. C.

2018-02-01

Upland red rice (Oryza sativa) is a staple food and contains anthocyanin, which can act as antioxidants, plays an important role both for the plant itself and for human health. Levels of antioxidants in rice can be affected by the availability of light. The results showed that the difference of shade, cultivar, and interaction both significantly affect the content of chlorophyll a, chlorophyll b and total chlorophyll. The results also showed that shade could increase chlorophyll in all cultivars tested. The highest levels of chlorophyll a were present in the moderate shade level (n2), then decreased at the shelter level (n3) and increased again at high levels (n4). While on chlorophyll content b, it appears that shade increased chlorophyll b in all cultivars tested and this increase was linear to the increase of shade. The shade treatment may increase the anthocyanin content and the increase depending on the type of cultivar. Increased levels of anthocyanin highest due to shade occurred on Jangkobembe cultivar. The original level of anthocyanin on Jangkobembe cultivar averaged 0.096 mg g-1 increased to 2.487 mg g-1 or increased 26 fold. It is concluded that the shade had a significant effect on the chlorophyll and anthocyanin content.

Nondestructive and intuitive determination of circadian chlorophyll rhythms in soybean leaves using multispectral imaging

NASA Astrophysics Data System (ADS)

Pan, Wen-Juan; Wang, Xia; Deng, Yong-Ren; Li, Jia-Hang; Chen, Wei; Chiang, John Y.; Yang, Jian-Bo; Zheng, Lei

2015-06-01

The circadian clock, synchronized by daily cyclic environmental cues, regulates diverse aspects of plant growth and development and increases plant fitness. Even though much is known regarding the molecular mechanism of circadian clock, it remains challenging to quantify the temporal variation of major photosynthesis products as well as their metabolic output in higher plants in a real-time, nondestructive and intuitive manner. In order to reveal the spatial-temporal scenarios of photosynthesis and yield formation regulated by circadian clock, multispectral imaging technique has been employed for nondestructive determination of circadian chlorophyll rhythms in soybean leaves. By utilizing partial least square regression analysis, the determination coefficients R2, 0.9483 for chlorophyll a and 0.8906 for chlorophyll b, were reached, respectively. The predicted chlorophyll contents extracted from multispectral data showed an approximately 24-h rhythm which could be entrained by external light conditions, consistent with the chlorophyll contents measured by chemical analyses. Visualization of chlorophyll map in each pixel offers an effective way to analyse spatial-temporal distribution of chlorophyll. Our results revealed the potentiality of multispectral imaging as a feasible nondestructive universal assay for examining clock function and robustness, as well as monitoring chlorophyll a and b and other biochemical components in plants.

Instability of chlorophyll in yellow lupin seedlings grown in soil contaminated with ciprofloxacin and tetracycline.

PubMed

Rydzyński, Dariusz; Piotrowicz-Cieślak, Agnieszka I; Grajek, Hanna; Michalczyk, Dariusz J

2017-10-01

With increasing soil concentrations of ciprofloxacin and tetracycline a decrease of leaf chlorophyll content was observed. Tetracycline was more detrimental than ciprofloxacin. The chlorophyll content in plants growing for ten days on a tetracycline containing soil decreased by 68%. The decrease of chlorophyll concentration was even sharper in new leaves that formed after application of the antibiotic (up to 81% drop). The comparison of absorption spectra of commercial, reagent grade chlorophyll, alone and incubated with antibiotics, has shown that ciprofloxacin and tetracycline can react directly with chlorophyll and decrease its concentration by 47.7% and 48.5%, respectively. The changes in fluorescence spectra confirmed the formation of chlorophyll degradation product. The chlorophyll decay was a second order reaction and depended on antibiotic concentration and duration of exposure. Reaction rate constants differed with antibiotics and their soil concentrations. With increasing contents of antibiotics in soil the constant of chlorophyll degradation rate in lupin plants increased from k = 870 M -1 day -1 for 3 mg ciprofloxacin to k = 2490 M -1 day -1 for 90 mg ciprofloxacin, and in the case of tetracycline the reaction rate constant increased from k = 1330 M -1 day -1 to k = 2910 M -1 day -1 . The sensitivity of chlorophyll to ciprofloxacin and tetracycline was confirmed by determining EC and TU indices. Copyright © 2017 Elsevier Ltd. All rights reserved.

Principal Component Analysis of Chlorophyll Content in Tobacco, Bean and Petunia Plants Exposed to Different Tropospheric Ozone Concentrations

NASA Astrophysics Data System (ADS)

Borowiak, Klaudia; Zbierska, Janina; Budka, Anna; Kayzer, Dariusz

2014-06-01

Three plant species were assessed in this study - ozone-sensitive and -resistant tobacco, ozone-sensitive petunia and bean. Plants were exposed to ambient air conditions for several weeks in two sites differing in tropospheric ozone concentrations in the growing season of 2009. Every week chlorophyll contents were analysed. Cumulative ozone effects on the chlorophyll content in relation to other meteorological parameters were evaluated using principal component analysis, while the relation between certain days of measurements of the plants were analysed using multivariate analysis of variance. Results revealed variability between plant species response. However, some similarities were noted. Positive relations of all chlorophyll forms to cumulative ozone concentration (AOT 40) were found for all the plant species that were examined. The chlorophyll b/a ratio revealed an opposite position to ozone concentration only in the ozone-resistant tobacco cultivar. In all the plant species the highest average chlorophyll content was noted after the 7th day of the experiment. Afterwards, the plants usually revealed various responses. Ozone-sensitive tobacco revealed decrease of chlorophyll content, and after few weeks of decline again an increase was observed. Probably, due to the accommodation for the stress factor. While during first three weeks relatively high levels of chlorophyll contents were noted in ozone-resistant tobacco. Petunia revealed a slow decrease of chlorophyll content and the lowest values at the end of the experiment. A comparison between the plant species revealed the highest level of chlorophyll contents in ozone-resistant tobacco.

Effect of Different Coating Materials on The Characteristics Of Chlorophyll Microcapsules from Caulerpa racemosa

NASA Astrophysics Data System (ADS)

Kurniasih, R. A.; Dewi, E. N.; Purnamayati, L.

2018-02-01

The sea grape (Caulerpa racemosa) has a chlorophyll pigment that can be extracted using a non-polar solvent. Chlorophyll as a natural dye has unstable characteristics of temperature, pH, and light. Microencapsulation by the freeze-drying method can be used to protect chlorophyll from degradation caused by external influences where the type of coating material can affect the characteristics of the chlorophyll microcapsules. The objective of this study was to determine the characteristics of chlorophyll microcapsules with various types of coating material. Chlorophyll was microencapsulated using maltodextrin (CM), maltodextrin-alginate (CMA), and maltodextrin-fish gelatin (CMG). Chlorophyll encapsulated with maltodextrin-alginate resulting in the highest yield. The results of FTIR analysis indicated the presence of following functional groups in chlorophyll microcapsules viz., inter- and intra-molecular bonded alcohol OH, C = N stretching imine/oxime or C = O stretching conjugated ketone or alkenes, OH phenol, and CN stretching amine. CM had a particle size between 9,061 - 469.9 nm, CMA between 9,707 - 363.5 nm, and CMG between 11.49 - 433.2 nm. Based on the observation of morphology by using SEM, it showed that the all of the chlorophyll microcapsules were in the form of flake shape and porous. CM and CMA looked more fragile than CMG it can be seen from the cracks in some parts of CM and CMA. Therefore, CMG release time was longer than CM and CMA.

[Simultaneous determination of carotenoids and chlorophylls in algae by high performance liquid chromatography].

PubMed

Yuan, J; Zhang, Y; Shi, X; Gong, X; Chen, F

1997-03-01

An isocratic reversed-phase HPLC method for the simultaneous determination of carotenoids and chlorophylls in algae is presented. Both carotenoids and chlorophylls were separated by using a C18 column and a mobile phase consisting of dichloromethane/acetonitrile/methanol/water (22.5:9.5:67.5:0.5). The flow rate was 1.0mL/min. These pigments were detected by a UV-VIS absorbance detector set at 450nm. The average recoveries of these pigments by standard addition method were 99.1% for lutein, 98.5% for alpha-carotene, 99.4% for beta-carotene, 100.6% for chlorophyll a and 99.9% for chlorophyll b. The relative standard deviations of these pigments were 2.4% for lutein, 5.6% for alpha-carotene, 6.0% for beta-carotene, 4.1% for chlorophyll a and 4.0% for chlorophyll b. The calibration curves for these pigments gave good linearity over a wide range of 0-50mg/L (r = 0.9992-0.9999). The retention times were 3.0 min for lutein, 4.7 min for chlorophyll b, 6.3 min for chlorophyll a, 14.1 min for alpha-carotene, and 14.7 min for beta-carotene. Using this method, carotenoids and chlorophylls were determined in Spirulina platensis, Chlorella vulgaris and Haematococcus lacustris. Chlorella vulgaris and Haematococcus lacustris samples were ground in a B. Braun homogenizer. Spirulina platensis sample was smashed by supersonic wave. Acetone was used as extractant.

Regional to Global Assessments of Phytoplankton Dynamics From The SeaWiFS Mission

NASA Technical Reports Server (NTRS)

Siegel, David; Behrenfeld, Michael; Maritorena, Stephanie; McClain, Charles R.; Antoine, David; Bailey, Sean W.; Bontempi, Paula S.; Boss, Emmanuel S.; Dierssen, Heidi M.; Doney, Scott C.;

Genome-wide association mapping of soybean chlorophyll traits based on canopy spectral reflectance and leaf extracts.

PubMed

Dhanapal, Arun Prabhu; Ray, Jeffery D; Singh, Shardendu K; Hoyos-Villegas, Valerio; Smith, James R; Purcell, Larry C; Fritschi, Felix B

2016-08-04

Chlorophyll is a major component of chloroplasts and a better understanding of the genetic basis of chlorophyll in soybean [Glycine max (L.) Merr.] might contribute to improving photosynthetic capacity and yield in regions with adverse environmental conditions. A collection of 332 diverse soybean genotypes were grown in 2 years (2009 and 2010) and chlorophyll a (eChl_A), chlorophyll b (eChl_B), and total chlorophyll (eChl_T) content as well as chlorophyll a/b ratio (eChl_R) in leaf tissues were determined by extraction and spectrometric determination. Total chlorophyll was also derived from canopy spectral reflectance measurements using a model of wavelet transformed spectra (tChl_T) as well as with a spectral reflectance index (iChl_T). A genome-wide associating mapping approach was employed using 31,253 single nucleotide polymorphisms (SNPs) to identify loci associated with the extract based eChl_A, eChl_B, eChl_R and eChl_T measurements and the two canopy spectral reflectance-based methods (tChl_T and iChl_T). A total of 23 (14 loci), 15 (7 loci) and 14 SNPs (10 loci) showed significant association with eChl_A, eChl_B and eChl_R respectively. A total of 52 unique SNPs were significantly associated with total chlorophyll content based on at least one of the three approaches (eChl_T, tChl_T and iChl_T) and likely tagged 27 putative loci for total chlorophyll content, four of which were indicated by all three approaches. Results presented here show that markers for chlorophyll traits can be identified in soybean using both extract-based and canopy spectral reflectance-based phenotypes, and confirm that high-throughput phenotyping-amenable canopy spectral reflectance measurements can be used for association mapping.

Relationships between leaf chlorophyll content and spectral reflectance and algorithms for non-destructive chlorophyll assessment in higher plant leaves.

PubMed

Gitelson, Anatoly A; Gritz, Yuri; Merzlyak, Mark N

2003-03-01

Leaf chlorophyll content provides valuable information about physiological status of plants. Reflectance measurement makes it possible to quickly and non-destructively assess, in situ, the chlorophyll content in leaves. Our objective was to investigate the spectral behavior of the relationship between reflectance and chlorophyll content and to develop a technique for non-destructive chlorophyll estimation in leaves with a wide range of pigment content and composition using reflectance in a few broad spectral bands. Spectral reflectance of maple, chestnut, wild vine and beech leaves in a wide range of pigment content and composition was investigated. It was shown that reciprocal reflectance (R lambda)-1 in the spectral range lambda from 520 to 550 nm and 695 to 705 nm related closely to the total chlorophyll content in leaves of all species. Subtraction of near infra-red reciprocal reflectance, (RNIR)-1, from (R lambda)-1 made index [(R lambda)(-1)-(RNIR)-1] linearly proportional to the total chlorophyll content in spectral ranges lambda from 525 to 555 nm and from 695 to 725 nm with coefficient of determination r2 > 0.94. To adjust for differences in leaf structure, the product of the latter index and NIR reflectance [(R lambda)(-1)-(RNIR)-1]*(RNIR) was used; this further increased the accuracy of the chlorophyll estimation in the range lambda from 520 to 585 nm and from 695 to 740 nm. Two independent data sets were used to validate the developed algorithms. The root mean square error of the chlorophyll prediction did not exceed 50 mumol/m2 in leaves with total chlorophyll ranged from 1 to 830 mumol/m2.

Vegetation chlorophyll estimates in the Amazon from multi-angle MODIS observations and canopy reflectance model

NASA Astrophysics Data System (ADS)

Hilker, Thomas; Galvão, Lênio Soares; Aragão, Luiz E. O. C.; de Moura, Yhasmin M.; do Amaral, Cibele H.; Lyapustin, Alexei I.; Wu, Jin; Albert, Loren P.; Ferreira, Marciel José; Anderson, Liana O.; dos Santos, Victor A. H. F.; Prohaska, Neill; Tribuzy, Edgard; Barbosa Ceron, João Vitor; Saleska, Scott R.; Wang, Yujie; de Carvalho Gonçalves, José Francisco; de Oliveira Junior, Raimundo Cosme; Cardoso Rodrigues, João Victor Figueiredo; Garcia, Maquelle Neves

2017-06-01

As a preparatory study for future hyperspectral missions that can measure canopy chemistry, we introduce a novel approach to investigate whether multi-angle Moderate Resolution Imaging Spectroradiometer (MODIS) data can be used to generate a preliminary database with long-term estimates of chlorophyll. MODIS monthly chlorophyll estimates between 2000 and 2015, derived from a fully coupled canopy reflectance model (ProSAIL), were inspected for consistency with eddy covariance fluxes, tower-based hyperspectral images and chlorophyll measurements. MODIS chlorophyll estimates from the inverse model showed strong seasonal variations across two flux-tower sites in central and eastern Amazon. Marked increases in chlorophyll concentrations were observed during the early dry season. Remotely sensed chlorophyll concentrations were correlated to field measurements (r2 = 0.73 and r2 = 0.98) but the data deviated from the 1:1 line with root mean square errors (RMSE) ranging from 0.355 μg cm-2 (Tapajós tower) to 0.470 μg cm-2 (Manaus tower). The chlorophyll estimates were consistent with flux tower measurements of photosynthetically active radiation (PAR) and net ecosystem productivity (NEP). We also applied ProSAIL to mono-angle hyperspectral observations from a camera installed on a tower to scale modeled chlorophyll pigments to MODIS observations (r2 = 0.73). Chlorophyll pigment concentrations (ChlA+B) were correlated to changes in the amount of young and mature leaf area per month (0.59 ≤ r2 ≤ 0.64). Increases in MODIS observed ChlA+B were preceded by increased PAR during the dry season (0.61 ≤ r2 ≤ 0.62) and followed by changes in net carbon uptake. We conclude that, at these two sites, changes in LAI, coupled with changes in leaf chlorophyll, are comparable with seasonality of plant productivity. Our results allowed the preliminary development of a 15-year time series of chlorophyll estimates over the Amazon to support canopy chemistry studies using future hyperspectral sensors.

Effect of Multiangular Observations on Crop Chlorophyll Content Retrieval Using Field Top-Of Spectrometer Data

NASA Astrophysics Data System (ADS)

Jiao, Q.; Liu, L.; Zhang, B.

2017-12-01

Leaf chlorophyll content is an important indicator of crop growth condition that determines final crop yield. A lot of research on remote sensing of leaf chlorophyll content were based on reflectance data acquired from nadir direction. However, reflectance data at nadir may be affected by soil background. In fact, many satellite sensors with capability of chlorophyll retrieval, like the 68.5 degrees field-of-view MERIS, have produced large multiangular data. This study tries to assess the anisotropic effect on the retrieval of leaf chlorophyll content using field hyperspectral data of wheat canopy. The field multi-angle observation experiment of winter wheat was carried out in April 2017 in Xiaotangshan agriculture demonstration study site in Beijing. Field canopy spectra and leaf chlorophyll content of winter wheat were measured. The most used indices for chlorophyll content retrieval, such as CIred-edge, REP, MTCI, MCARI/OSAVI[705,750], TCARI/OSAVI[705,750], were calculated based on the filed multiangular reflectance. The ratio index TCARI/OSAVI owned the best results in estimating leaf chlorophyll content (R2 of 0.62) among all the selected indices, when using the top-of-canopy reflectance at nadir. The determination coefficient of the relationship of TCARI/OSAVI with chlorophyll content reached its peak (R2 of 0.70) at angle of 15 degrees, and the minimum R2 value of only 0.25 at angle of 60 degrees. The MTCI got the peak of determination coefficient (R2 of 0.63) at angle of 15 degrees and the minimum value (R2 of 0.57) for 60 degrees. Our results showed the MTCI could keep a more satisfactory correlation with leaf chlorophyll content of winter wheat, however the mean values of the MTCI basically decreased as the observation angle increases. This work shows the strong anisotropic effects of top-of-canopy reflectance which influences most of selected popular chlorophyll indices. If spectral index selection is proper, multiangular remote sensing could produce higher accuracy for leaf chlorophyll content retrieval than only using nadir observation. Multi-angular remote sensing has the potential of leaf chlorophyll content retrieval for diagnosis of crop nitrogen stress or water stress.

Quantifying Foliar Pigment Concentrations of Temperate Forest Species Using Digital Photography and Hyperspectral Reflectance Indices

NASA Astrophysics Data System (ADS)

Gagnon, M. T.; Rock, B. N.; Jahnke, L. S.; Lee, T. D.

2008-12-01

Determination of leaf chlorophyll content is a common and important procedure for plant scientists. There are many multispectral techniques for non destructive in-vivo, estimation of chlorophyll in foliage. Although much has been done to explore the estimation of foliar pigments using remote sensing, very little work has been done exploring the potential that basic, affordable, digital cameras may have for such analysis. This study utilizes a combination of digital photography, hyperspectral laboratory remote sensing, and chlorophyll extractions to determine if digital photographs can be used to accurately predict foliar chlorophyll concentrations as well to compare this digital approach with several common spectral indices used for estimating foliar chlorophyll content. Foliar materials for this study come from three sources. A large collection of samples were collected (60) from 9 common temperate forest species in July and late September over a 1 kilometer area at the Bartlett Experimental Forest in northern New Hampshire. Secondly, 15 trees were selected in a forested setting near the University of New Hampshire for more intensive phenological analysis. These samples consist of 5 white pine (Pinus strobus), 5 black oak (Quercus velutina) and 5 sugar maple (Acer saccharum). Finally, dozens of samples of white pine utilized in Forest Watch, a successful K-12 science outreach which assesses the impact of tropospheric ozone on forest health in New England, were also analyzed for this study. For all samples in this study, chlorophyll extractions were conducted to determine chlorophyll a, chlorophyll b, and total chlorophyll concentrations. Laboratory spectral analysis was performed using a GER 2600 Spectroradiometer to determine hyperspectral estimates of chlorophyll content using a Red Edge Inflection Point (REIP) approach, as well as a Transformed Chlorophyll Absorption Reflectance Index/Optimized Soil Adjusted Vegetation Index (TCARI/OSAVI) approach. These measures of chlorophyll estimation were utilized to determine whether red, green and blue spectral data from digital images taken with a Kodak C713 model camera could be used to estimate foliar chlorophyll concentrations in forest foliage. Preliminary results of this study will be presented.

Topographic stress perturbations in southern Davis Mountains, west Texas 1. Polarity reversal of principal stresses

USGS Publications Warehouse

Savage, W.Z.; Morin, R.H.

2002-01-01

We have applied a previously developed analytical stress model to interpret subsurface stress conditions inferred from acoustic televiewer logs obtained in two municipal water wells located in a valley in the southern Davis Mountains near Alpine, Texas. The appearance of stress-induced breakouts with orientations that shift by 90?? at two different depths in one of the wells is explained by results from exact solutions for the effects of valleys on gravity and tectonically induced subsurface stresses. The theoretical results demonstrate that above a reference depth termed the hinge point, a location that is dependent on Poisson's ratio, valley shape, and magnitude of the maximum horizontal tectonic stress normal to the long axis of the valley, horizontal stresses parallel to the valley axis are greater than those normal to it. At depths below this hinge point the situation reverses and horizontal stresses normal to the valley axis are greater than those parallel to it. Application of the theoretical model at Alpine is accommodated by the fact that nearby earthquake focal mechanisms establish an extensional stress regime with the regional maximum horizontal principal stress aligned perpendicular to the valley axis. We conclude that the localized stress field associated with a valley setting can be highly variable and that breakouts need to be examined in this context when estimating the orientations and magnitudes of regional principal stresses.

Exchange of groundwater and surface-water mediated by permafrost response to seasonal and long term air temperature variation

USGS Publications Warehouse

Ge, S.; McKenzie, J.; Voss, C.; Wu, Q.

2011-01-01

Permafrost dynamics impact hydrologic cycle processes by promoting or impeding groundwater and surface water exchange. Under seasonal and decadal air temperature variations, permafrost temperature changes control the exchanges between groundwater and surface water. A coupled heat transport and groundwater flow model, SUTRA, was modified to simulate groundwater flow and heat transport in the subsurface containing permafrost. The northern central Tibet Plateau was used as an example of model application. Modeling results show that in a yearly cycle, groundwater flow occurs in the active layer from May to October. Maximum groundwater discharge to the surface lags the maximum subsurface temperature by two months. Under an increasing air temperature scenario of 3C per 100 years, over the initial 40-year period, the active layer thickness can increase by three-fold. Annual groundwater discharge to the surface can experience a similar three-fold increase in the same period. An implication of these modeling results is that with increased warming there will be more groundwater flow in the active layer and therefore increased groundwater discharge to rivers. However, this finding only holds if sufficient upgradient water is available to replenish the increased discharge. Otherwise, there will be an overall lowering of the water table in the recharge portion of the catchment. Copyright 2011 by the American Geophysical Union.

Evaluating lake phytoplanton response to human disturbance and climate change using satellite imagery

NASA Astrophysics Data System (ADS)

Novitski, Linda Nicole

Accurate and cost-effective assessment of water quality is necessary for proper management and restoration of inland water bodies susceptible to algal bloom conditions. Landsat and MODIS satellite images were used to create chlorophyll and Secchi depth predictive models for algal assessment of Great Lakes and other lakes of the United States. Boosted regression tree (BRT) models using satellite imagery are both easy to use and can have high predictive performance. BRT models inferred chlorophyll and Secchi depth more accurately than linear regression models for all study locations. Inferred chlorophyll of inner Saginaw Bay was subsequently used in ecological models to help understand the ecological drivers of algal blooms in this ecosystem. For small lakes (non-Great Lakes), the best national Landsat model for ln-transformed chlorophyll was the BRT model and had a cross-validation R 2 of 0.44 and a 0.76 ln-transformed mug/L RMSE. The best national Landsat model for Secchi depth was also a BRT model that had an adjusted R 2 of 0.52 and a 0.80 m RMSE. We assessed the applicability of the national chlorophyll model for ecological analysis by comparing the total phosphorus- chlorophyll relationship with chlorophyll determined from sampling or remote sensing, which showed the total phosphorus- chlorophyll relationship had an adjusted R2 = 0.58 and 1.02 ln-transformed microg/L RMSE with sampled chlorophyll versus an adjusted R2 = 0.56 and 1.04 ln-transformed mug/L RMSE with chlorophyll determined by the boosted regression tree remote sensing model. For Great Lakes models, the MODIS BRT model predicted chlorophyll most accurately of the three BRT models and compared well to other models in the literature. BRT models for Landsat ETM+ and TM more accurately predicted chlorophyll than the MSS model and all Landsat models had favorable results when compared to the literature. BRT chlorophyll predictive models are useful in helping to understand historical, long-term chlorophyll trends and to inform us of how climate change may alter ecosystems in the future. In inner Saginaw Bay, annual average and upper quartile Landsat-derived chlorophyll decreased from 7.44 to 6.62 and 8.38 to 7.38 mug/L between 1973-1982, and annual upper quartile of 8-day phosphorus loads increased from 5.29 to 6.79 kg between 1973-2012. Simple linear and multiple regression models and Wilcoxon rank test results for MODIS and Landsat-derived chlorophyll indicate that distance from the Saginaw River mouth influences chlorophyll concentration in Saginaw Bay; Landsat-derived surface water temperature and phosphorus loads to a lesser extent. Mixed-effect models for MODIS and Landsat-derived chlorophyll were related to chlorophyll better than simple linear or multiple regressions, with random effects of pixel and sample date contributing substantially to predictive power (NSE=0.35-70), though phosphorus loads, distance to Saginaw River mouth, and water were significant fixed effects in most models. Water quality changes in Saginaw Bay between 1972-2012 were influenced by phosphorus loading and distance to the Saginaw River's mouth. Landsat and MODIS imagery are complementary platforms because of the long history of Landsat operation and the finer spectral resolution and image frequency of MODIS. Remote sensing water quality assessment tools can be valuable for limnological study, ecological assessment, and water resource management.