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Sample records for sulfate soil analysis

  1. Sulfate adsorption in Michigan forest soils

    SciTech Connect

    MacDonald, N.W.

    1987-01-01

    The occurrence of acidic atmospheric deposition raised concerns over adverse cation leaching effects on Michigan forest soils with low cation exchange capacities. Leaching effects of acid deposition depend on mobility of sulfate in the soil. Little was known, however, concerning the ability of these soils to adsorb sulfate. The objectives of this study were to determine the ability of representative Michigan forest soils to adsorb sulfate, to relate sulfate adsorption to soil properties, and to develop equations to predict sulfate adsorption in similar forest soils. Frigid zone soil series studied were Grayling (Typic Udipsamments), Rubicon (Entic Haplorthods), Kalkaska (Typic Haplorthods), and Montcalm (Eutric Glossoboralfs). Mesic zone series studied were Spinks (Psammentic Hapludals) and Oshtemo (Typic Hapludalfs). Six randomly located pedons of each series were sampled. Sulfate adsorption was determined by shaking 10 gram soil samples for 24 hours in 50 mL 0.01 M CaCl/sub 2/ solution containing 10 mg SO/sub 4/-S L/sup -1/. Solution filtrates were turbidimetrically analyzed for SO/sub 4/-S and adsorption was calculated from reduction in SO/sub 4/-S concentration. Bw, Bs, and Bh horizons of frigid zone soils and E and Bt horizons of mesic zone soils had the highest sulfate adsorbing abilities. No significant differences were found between series in total sulfate adsorptive capacity.

  2. Ferric sulfate montmorillonites as Mars soil analogs

    NASA Technical Reports Server (NTRS)

    Bishop, J. L.; Pieters, C. M.; Burns, R. G.

    1993-01-01

    Spectroscopic analyses have shown that Fe(3+)-doped smectites prepared in the laboratory exhibit important similarities to the soils on Mars. Ferrihydrite in these smectites has features in the visible to near-infrared region that resemble the energies and band-strengths of features in reflectance spectra observed for several bright regions on Mars. Ferric - sulfate - montmorillonite samples have been prepared more recently because they are a good compositional match with the surface material on Mars as measured by Viking. Reflectance spectra of montmorillonite doped with ferric sulfate in the interlayer regions include a strong 3 micron band that persists under dry conditions. This is in contrast to spectra of similarly prepared ferric-doped montmorillonites, which exhibit a relatively weaker 3 micron band under comparable dry environmental conditions. Presented here are reflectance spectra of a suite of ferric-sulfate exchanged montmorillonites prepared with variable ferric sulfate concentrations and variable pH conditions.

  3. Sulfate reduction in freshwater wetland soils and the effects of sulfate and substrate loading

    SciTech Connect

    Feng, J.; Hsieh, Y.P.

    1998-07-01

    Elevated sulfate and organic C loadings in freshwater wetlands could stimulate dissimilatory sulfate reduction that oxidizes organic C, produces hydrogen sulfide and alkalinity, and sequesters trace metals. The authors determined the extent of sulfate reduction in two freshwater wetland soils, that is black gum (Nyssa biflona) swamp soils and titi (Cliftonia monophylla) swamp soils, in northern Florida. They also investigated the potential of sulfate reduction in the wetland soils by adding sulfate, organic substrate, and lime. Sulfate reduction was found to be an active process in both swamp soils without any amendment, where the pore water pH was as low as 3.6 and sulfate concentration was as low as 5 mg L{sup {minus}1}. Without amendment, 11 to 14% of organic C was oxidized through sulfate reduction in the swamp soils. Sulfate loading, liming, and substrate addition significantly increased sulfate reduction in the black gum swamp soil, but none of those treatments increase sulfate reduction in the titi swamp soil. The limiting factor for sulfate reduction in the titi swamp soil were likely texture and soil aggregate related properties. The results suggested that wastewater loading may increase sulfate reduction in some freshwater wetlands such as the black swamps while it has no stimulating effect on other wetlands such as the titi swamps.

  4. Selenium inhibits sulfate-mediated methylmercury production in rice paddy soil.

    PubMed

    Wang, Yong-Jie; Dang, Fei; Zhao, Jia-Ting; Zhong, Huan

    2016-06-01

    There is increasing interest in understanding factors controlling methylmercury (MeHg) production in mercury-contaminated rice paddy soil. Sulfate has been reported to affect MeHg biogeochemistry under anoxic conditions, and recent studies revealed that selenium (Se) could evidently reduce MeHg production in paddy soil. However, the controls of sulfate and Se on net MeHg production in paddy soil under fluctuating redox conditions remain largely unknown. Microcosm experiments were conducted to explore the effects of sulfate and Se on net MeHg production in rice paddy soil. Soil was added with 0-960 mg/kg sulfate, in the presence or absence of 3.0 mg/kg selenium (selenite or selenate), and incubated under anoxic (40 days) or suboxic conditions (5 days), simulating fluctuating redox conditions in rice paddy field. Sulfate addition moderately affected soil MeHg concentrations under anoxic conditions, while reoxidation resulted in evidently higher (18-40%) MeHg levels in sulfate amended soils than the control. The observed changes in net MeHg production were related to dynamics of sulfate and iron. However, Se could inhibit sulfate-mediated MeHg production in the soils: Se addition largely reduced net MeHg production in the soils (23-86%, compared to the control), despite of sulfate addition. Similarly, results of the pot experiments (i.e., rice cultivation in amended soils) indicated that soil MeHg levels were rather comparable in Se-amended soils during rice growth period, irrespective of added sulfate doses. The more important role of Se than sulfate in controlling MeHg production was explained by the formation of HgSe nanoparticles irrespective of the presence of sulfate, confirmed by TEM-EDX and XANES analysis. Our findings regarding the effects of sulfate and Se on net MeHg production in rice paddy soil together with the mechanistic explanation of the processes advance our understanding of MeHg dynamics and risk in soil-rice systems.

  5. Glufosinate and Ammonium Sulfate Inhibits Atrazine Degradation in Adapted Soils

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The co-application of glufosinate with nitrogen fertilizers may alter atrazine co-metabolism, thereby extending the herbicide’s residual weed control in adapted soils. The objective of this study was to assess the effects of glufosinate, ammonium sulfate, and the combination of glufosinate and ammo...

  6. Calcium sulfate crystallization along citrus root channels in a Florida soil exhibiting acid sulfate properties

    SciTech Connect

    Syslo, S.K.; Myhre, D.L.; Harris, W.G.

    1988-02-01

    The authors observed euhedral crystals in Manatee soil in a citrus grove in St. Lucie County, Florida. The material was identified as gypsum (CaSO/sub 4/ /times/ 2H/sub 2/O) using x-ray diffraction and infrared spectra. Photomicrography and scanning electron microscopy revealed that gypsum accumulated both in old root channels and within citrus root tissue of the Btg horizon. The subsurface horizons had elevated sulfate levels, a low initial pH, a drop (0.5 unit) in pH upon air-drying. Electrical conductivity paralleled the concentration of water-soluble sulfate. High levels of calcium and sulfate occurred for horizons above the water table. This accumulation is attributed to groundwater bearing these ions and subsequently discharging them to the overlying soil. Dead citrus roots appear to act as wicks to aid water transfer from lower to higher horizons. The roots and their empty channels provide spaces in which the gypsum can precipitate if the concentrations of calcium and sulfate in the evaporating groundwater exceed the solubility product of gypsum.

  7. Diffusive gradients in thin films measurement of sulfur stable isotope variations in labile soil sulfate.

    PubMed

    Hanousek, Ondrej; Santner, Jakob; Mason, Sean; Berger, Torsten W; Wenzel, Walter W; Prohaska, Thomas

    2016-11-01

    A diffusive gradient in thin films (DGT) technique, based on a strongly basic anion exchange resin (Amberlite IRA-400), was successfully tested for (34)S/(32)S analysis in labile soil sulfate. Separation of matrix elements (Na, K, and Ca) that potentially cause non-spectral interferences in (34)S/(32)S analysis by MC ICP-MS (multi-collector inductively coupled plasma-mass spectrometry) during sampling of sulfate was demonstrated. No isotopic fractionation caused by diffusion or elution of sulfate was observed below a resin gel disc loading of ≤79 μg S. Above this threshold, fractionation towards (34)S was observed. The method was applied to 11 different topsoils and one mineral soil profile (0-100 cm depth) and compared with soil sulfate extraction by water. The S amount and isotopic ratio in DGT-S and water-extractable sulfate correlated significantly (r (2) = 0.89 and r (2) = 0.74 for the 11 topsoils, respectively). The systematically lower (34)S/(32)S isotope ratios of the DGT-S were ascribed to mineralization of organic S.

  8. Bioremediation of coal contaminated soil under sulfate-reducing condition.

    PubMed

    Kuwano, Y; Shimizu, Y

    2006-01-01

    The objective of this study was to investigate the biodegradation of coal-derived hydrocarbons, especially high molecular weight (HMW) components, under anaerobic conditions. For this purpose biodegradation experiments were performed, using specifically designed soil column bioreactors. For the experiment, coal-contaminated soil was prepared, which contains high molecular weight hydrocarbons at high concentration (approx. 55.5 mgC g-drysoil(-1)). The experiment was carried out in two different conditions: sulfate reducing (SR) condition (SO4(2-) = 10 mmol l(-1) in the liquid medium) and control condition (SO4(2-)<0.5 mmol l(-1)). Although no degradation was observed under the control condition, the resin fraction decreased to half (from 6,541 to 3,386 mgC g-soil(-1)) under SR condition, with the concomitant increase of two PAHs (phenanthrene and fluoranthene, 9 and 2.5 times, respectively). From these results, we could conclude that high molecular hydrocarbons were biodegradable and transformed to low molecular weight PAHs under the sulfate-reducing condition. Since these PAHs are known to be biologically degraded under aerobic condition, a serial combination of anaerobic (sulfate reducing) and then aerobic bioremediations could be effective and useful for the soil pollution by petroleum and/or coal derived hydrocarbons.

  9. [Effects of colistin sulfate residue on soil microbial community structure].

    PubMed

    Ma, Yi; Peng, Jin-Ju; Chen, Jin-Jun; Fan, Ting-Li; Sun, Yong-Xue

    2014-06-01

    By using fumigation extraction and phospholipid fatty acid (PLFA) methods, the change of characteristics of soil microbial community structure caused by residue of colistin sulfate (CS) was studied. The results showed that the CS (w(cs) > or = 5 mg x kg(-1)) had a significant effect on the microbial biomass carbon (MBC) and it was dose-dependent where MBC decreased with the increase of CS concentration in soil. The MBC in soil decreased by 52. 1% when the CS concentration reached 50 mg x kg(-1). The total PLFA of soil in each CS treatment was significantly decreased during the sampling period compared with the control group and showed a dose-dependent relationship. The soil microbial community structure and diversity in the low CS group (w(cs) = 0.5 mg x kg(-1)) were not significantly different from the control group on 7th and 49th day. However, they were significantly different on 21st and 35th day especially in the high CS group (w(cs) = 50 mg x kg(-1)). It was concluded that CS could change the structure of soil microorganisms and varied with time which might be caused by the chemical conversion and degradation of CS in soil.

  10. Isotopically exchangeable Al in coastal lowland acid sulfate soils.

    PubMed

    Yvanes-Giuliani, Yliane A M; Fink, D; Rose, J; Waite, T David; Collins, Richard N

    2016-01-15

    Periodic discharges of high concentrations of aluminium (Al) causing fish kills and other adverse effects occur worldwide in waterways affected by coastal lowland acid sulfate soils (CLASS). The exchangeability - a metal's ability to readily transfer between the soil solid- and solution-phases - of Al in these soils is therefore of particular importance as it has implications for metal transport, plant availability and toxicity to living organisms. In the present study, the concentrations of isotopically exchangeable Al (E values) were measured in 27 CLASS and compared with common salt extractions (i.e. KCl and CuCl2) used to estimate exchangeable soil pools of Al. E values of Al were high in the soils, ranging from 357 to 3040 mg·kg(-1). Exchangeable concentrations estimated using 1 M KCl were consistently lower than measured E values, although a reasonable correlation was obtained between the two values (E=1.68×AlKCl, r(2)=0.66, n=25). The addition of a 0.2 M CuCl2 extraction step improved the 1:1 agreement between extractable and isotopically exchangeable Al concentrations, but lead to significant mobilisation of non-isotopically exchangeable Al in surficial 'organic-rich' CLASS having E values<1000 mg·kg(-1). It was concluded that currently used (i.e. 1 M KCl) methodology severely underestimates exchangeable Al and total actual acidity values in CLASS and should be corrected by a factor similar to the one determined here.

  11. Processes and fluxes during the initial stage of acid sulfate soil formation

    NASA Astrophysics Data System (ADS)

    Gröger, J.; Hamer, K.; Schulz, H. D.

    2009-04-01

    Acid sulfate soils occur over a wide range of climatic zones, mainly in coastal landscapes. In these soils, the release of sulfuric acid by the oxidation of pyrite generates a very acidic environment (e.g., DENT and PONS, 1995, PONS, 1973). Two major types of acid sulfate soils can be distinguished: In actual acid sulfate soils, the initially contained pyrite was at least partly oxidized. This resulted in a severe acidification of the soil. Potential acid sulfate soils are generally unoxidized and contain large amounts of pyrite. Upon oxidation, these soils will turn into actual acid sulfate soils. By excavation or lowering of the groundwater table, potential acid sulfate soils can be exposed to atmospheric oxygen. During oxidation the pH drops sharply to values below pH 4. This acidification promotes the release of various metals, e.g., alumina, iron and heavy metals. Additionally, large quantities of sulfate are released. In order to assess the effects of disturbances of potential acid sulfate soils, for example by excavations during construction works, several large scale column experiments were conducted with various types of potential acid sulfate soils from Northern Germany. In these experiments, the oxidation and initial profile development of pyritic fen peats and thionic fluvisols were studied over a period of 14 months. The study focused on leaching and the translocation of various metals in the soil profile. To study mobilization processes, element fluxes and the progress of acidification, soil water and leachate were analyzed for total element concentrations. Furthermore, several redox-sensitive parameters, e.g., Fe2+ and sulfide, were measured and changes to the initial solid phase composition were analyzed. Chemical equilibria calculations of the soil water were used to gain insights into precipitation processes of secondary products of pyrite oxidation and leaching products. The results of this study will support the assessment of risks deriving from

  12. Sulfate Transport and Release in Technogenic Soil Substrates: Experiments and Numerical Modeling

    NASA Astrophysics Data System (ADS)

    Schonsky, H.; Peters, A.; Lang, F.; Mekiffer, B.; Wessolek, G.

    2012-04-01

    In Berlin and many other cities technogenic soil substrates from World War II and building and construction debris in general play an important role for soil formation and solute transport in the vadose zone. The largest debris landfill in Berlin is the Teufelsberg. Sulfate release from the landfill poses threats for groundwater quality. The scope of this study is to determine the processes controlling sulfate release from soils containing rubble. Column leaching experiments were conducted to analyze sulfate mobilization from Teufelsberg topsoil material. Flow interruptions of one and seven days were introduced. Sulfate release was modeled using a geochemical simulation tool (HP1). The model considered water flux, solute transport and precipitation/dissolution with first order kinetics. Sulfate release increased after flow interruptions, although bromide breakthrough indicated physical equilibrium of transport processes. The model was applicable for qualitative description of our experimental results. The estimated equilibrium concentrations of sulfate were one to two orders of magnitude smaller than expected according to the equilibrium constant of gypsum. It is assumed that the mobilization of sulfate from calcite/gypsum co-precipitates determines the sulfate concentrations in the soil solution of the studied soils. If Sulfate release and transport from soils containing debris is modeled with literature values, sulfate concentrations will be overestimated by one to two orders of magnitude.

  13. Soil Profile Sulfate in Irrigated Southern High Plains Cotton Fields and Ogallala Groundwater

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soil Profile Sulfate in Irrigated Southern High Plains Cotton Fields and Ogallala Groundwater Abstract: Sulfate (SO4) is one of the most important anions in soils and groundwater in semiarid regions, including West Texas. Crops’ sulfur (S) requirement is about 10 to 20 % of the nitrogen (N) require...

  14. Criteria for Remote Sensing Detection of Sulfate Cemented Soils on Mars

    NASA Technical Reports Server (NTRS)

    Cooper, Christopher D.; Mustard, John F.

    2000-01-01

    Spectral measurements of loose and cemented mixtures of palagonitic soil and sulfates were made to determine whether cemented soils could be identified on Mars. Cemented MgSO4 mixtures exhibit an enhanced 9 micron sulfate fundamental compared to gypsum mixtures due to more diffuse and pervasive cementing.

  15. Formation of diphenylthioarsinic acid from diphenylarsinic acid under anaerobic sulfate-reducing soil conditions.

    PubMed

    Hisatomi, Shihoko; Guan, Ling; Nakajima, Mami; Fujii, Kunihiko; Nonaka, Masanori; Harada, Naoki

    2013-11-15

    Diphenylarsinic acid (DPAA) is a toxic phenylarsenical compound often found around sites contaminated with phenylarsenic chemical warfare agents, diphenylcyanoarsine or diphenylchloroarsine, which were buried in soil after the World Wars. This research concerns the elucidation of the chemical structure of an arsenic metabolite transformed from DPAA under anaerobic sulfate-reducing soil conditions. In LC/ICP-MS analysis, the retention time of the metabolite was identical to that of a major phenylarsenical compound synthesized by chemical reaction of DPAA and hydrogen sulfide. Moreover the mass spectra for the two compounds measured using LC/TOF-MS were similar. Subsequent high resolution mass spectral analysis indicated that two major ions at m/z 261 and 279, observed on both mass spectra, were attributable to C12H10AsS and C12H12AsSO, respectively. These findings strongly suggest that the latter ion is the molecular-related ion ([M+H](+)) of diphenylthioarsinic acid (DPTA; (C6H5)2AsS(OH)) and the former ion is its dehydrated fragment. Thus, our results reveal that DPAA can be transformed to DPTA, as a major metabolite, under sulfate-reducing soil conditions. Moreover, formation of diphenyldithioarsinic acid and subsequent dimerization were predicted by the chemical reaction analysis of DPAA with hydrogen sulfide. This is the first report to elucidate the occurrence of DPAA-thionation in an anaerobic soil.

  16. Effect of sulfate and carbonate minerals on particle-size distributions in arid soils

    USGS Publications Warehouse

    Goossens, Dirk; Buck, Brenda J.; Teng, Yuazxin; Robins, Colin; Goldstein, Harland L.

    2014-01-01

    Arid soils pose unique problems during measurement and interpretation of particle-size distributions (PSDs) because they often contain high concentrations of water-soluble salts. This study investigates the effects of sulfate and carbonate minerals on grain-size analysis by comparing analyses in water, in which the minerals dissolve, and isopropanol (IPA), in which they do not. The presence of gypsum, in particular, substantially affects particle-size analysis once the concentration of gypsum in the sample exceeds the mineral’s solubility threshold. For smaller concentrations particle-size results are unaffected. This is because at concentrations above the solubility threshold fine particles cement together or bind to coarser particles or aggregates already present in the sample, or soluble mineral coatings enlarge grains. Formation of discrete crystallites exacerbates the problem. When soluble minerals are dissolved the original, insoluble grains will become partly or entirely liberated. Thus, removing soluble minerals will result in an increase in measured fine particles. Distortion of particle-size analysis is larger for sulfate minerals than for carbonate minerals because of the much higher solubility in water of the former. When possible, arid soils should be analyzed using a liquid in which the mineral grains do not dissolve, such as IPA, because the results will more accurately reflect the PSD under most arid soil field conditions. This is especially important when interpreting soil and environmental processes affected by particle size.

  17. Acid sulfate soils are an environmental hazard in Finland

    NASA Astrophysics Data System (ADS)

    Pihlaja, Jouni

    2016-04-01

    Acid sulfate soils (ASS) create significant threats to the environment on coastal regions of the Baltic Sea in Finland. The sediments were deposited during the ancient Litorina Sea phase of the Baltic Sea about 7500-4500 years ago. Finland has larger spatial extent of the ASS than any other European country. Mostly based on anthropogenic reasons (cultivation, trenching etc.) ASS deposits are currently being exposed to oxygen which leads to chemical reaction creating sulfuric acid. The acidic waters then dissolve metals form the soil. Acidic surface run off including the metals are then leached into the water bodies weakening the water quality and killing fish or vegetation. In constructed areas acidic waters may corrode building materials. Geological Survey of Finland (GTK) is mapping ASS deposits in Finland. The goal is to map a total of 5 million hectares of the potentially ASS affected region. It has been estimated that the problematic Litorina Sea deposits, which are situated 0-100 m above the recent Baltic Sea shoreline, cover 500 000 hectares area. There are several phases in mapping. The work begins at the office with gathering the existing data, interpreting airborne geophysical data and compiling a field working plan. In the field, quality of the soil is studied and in uncertain cases samples are taken to laboratory analyses. Also electrical conductivity and pH of soil and water are measured in the field. Laboratory methods include multielemental determinations with ICP-OES, analyses of grain size and humus content (LOI), and incubation. So far, approximately 60 % of the potential ASS affected regions in Finland are mapped. Over 15 000 sites have been studied in the field and 4000 laboratory analyses are done. The spatial database presented in the scale of 1: 250 000 can be viewed at the GTK's web pages (http://gtkdata.gtk.fi/hasu/index.html).

  18. Novel diffusive gradients in thin films technique to assess labile sulfate in soil.

    PubMed

    Hanousek, Ondrej; Mason, Sean; Santner, Jakob; Chowdhury, Md Mobaroqul Ahsan; Berger, Torsten W; Prohaska, Thomas

    2016-09-01

    A novel diffusive gradients in thin films (DGT) technique for sampling labile soil sulfate was developed, based on a strong basic anion exchange resin (Amberlite IRA-400) for sulfate immobilization on the binding gel. For reducing the sulfate background on the resin gels, photopolymerization was applied instead of ammonium persulfate-induced polymerization. Agarose cross-linked polyacrylamide (APA) hydrogels were used as diffusive layer. The sulfate diffusion coefficient in APA gel was determined as 9.83 × 10(-6) ± 0.35 × 10(-6) cm(2) s(-1) at 25 °C. The accumulated sulfate was eluted in 1 mol L(-1) HNO3 with a recovery of 90.9 ± 1.6 %. The developed method was tested against two standard extraction methods for soil sulfate measurement. The obtained low correlation coefficients indicate that DGT and conventional soil test methods assess differential soil sulfate pools, rendering DGT a potentially important tool for measuring labile soil sulfate.

  19. Reflectance spectroscopy of ferric sulfate-bearing montmorillonites as Mars soil analog materials

    NASA Technical Reports Server (NTRS)

    Bishop, J. L.; Pieters, C. M.; Burns, R. G.; Edwards, J. O.; Mancinelli, R. L.; Froschl, H.

    1995-01-01

    Spectroscopic analyses have shown that smectites enhanced in the laboratory with additional ferric species exhibit important similarities to those of the soils on Mars. Ferrihydrite in these chemically treated smectites has features in the visible to near-infrared region that resemble the energies and band strengths of features in reflectance spectra observed for several bright regions on Mars. New samples have been prepared with sulfate as well, because S was found by Viking to be a major component in the surface material on Mars. A suite of ferrihydrite-bearing and ferric sulfate-bearing montmorillonites, prepared with variable Fe3+ and S concentrations and variable pH conditions, has been analyzed using reflectance spectroscopy in the visible and infrared regions, Mossbauer spectroscopy at room temperature and 4 K, differential thermal analysis, and X-ray diffraction. These analyses support the formation of ferrihydrite of variable crystallinity in the ferrihydrite-bearing montmorillonites and a combination of schwertmannite and ferrihydrite in the ferric sulfate-bearing montmorillonites. Small quantities of poorly crystalline or nanophase forms of other ferric materials may also be present in these samples. The chemical formation conditions of the ferrihydrite-bearing and ferric sulfate-bearing montmorillonites influence the character of the low temperature Mossbauer sextets and the visible reflectance spectra. An absorption minimum is observed at 0.88-0.89 micrometers in spectra of the ferric sulfate-bearing samples, and at 0.89-0.92 micrometers in spectra of the ferrihydrate-bearing montmorillonites. Mossbauer spectra of the ferric sulfate-bearing montmorillonites indicate variable concentrations of ferrihydrite and schwertmannite in the interlaminar spaces and along grain surfaces. Dehydration under reduced atmospheric pressure conditions induces a greater effect on the adsorbed and interlayer water in ferrihydrite-bearing montmorillonite than on the water

  20. Reflectance spectroscopy of ferric sulfate-bearing montmorillonites as Mars soil analog materials.

    PubMed

    Bishop, J L; Pieters, C M; Burns, R G; Edwards, J O; Mancinelli, R L; Fröschl, H

    1995-09-01

    Spectroscopic analyses have shown that smectites enhanced in the laboratory with additional ferric species exhibit important similarities to those of the soils on Mars. Ferrihydrite in these chemically treated smectites has features in the visible to near-infrared region that resemble the energies and band strengths of features in reflectance spectra observed for several bright regions on Mars. New samples have been prepared with sulfate as well, because S was found by Viking to be a major component in the surface material on Mars. A suite of ferrihydrite-bearing and ferric sulfate-bearing montmorillonites, prepared with variable Fe3+ and S concentrations and variable pH conditions, has been analyzed using reflectance spectroscopy in the visible and infrared regions, Mössbauer spectroscopy at room temperature and 4 K, differential thermal analysis, and X-ray diffraction. These analyses support the formation of ferrihydrite of variable crystallinity in the ferrihydrite-bearing montmorillonites and a combination of schwertmannite and ferrihydrite in the ferric sulfate-bearing montmorillonites. Small quantities of poorly crystalline or nanophase forms of other ferric materials may also be present in these samples. The chemical formation conditions of the ferrihydrite-bearing and ferric sulfate-bearing montmorillonites influence the character of the low temperature Mössbauer sextets and the visible reflectance spectra. An absorption minimum is observed at 0.88-0.89 micrometers in spectra of the ferric sulfate-bearing samples, and at 0.89-0.92 micrometers in spectra of the ferrihydrate-bearing montmorillonites. Mössbauer spectra of the ferric sulfate-bearing montmorillonites indicate variable concentrations of ferrihydrite and schwertmannite in the interlaminar spaces and along grain surfaces. Dehydration under reduced atmospheric pressure conditions induces a greater effect on the adsorbed and interlayer water in ferrihydrite-bearing montmorillonite than on the

  1. Spectral and Textural Changes Observed in Sulfate Soil Deposits at Gusev Crater, Mars

    NASA Astrophysics Data System (ADS)

    Rice, M. S.; Bell, J. F.; Wang, A.; Johnson, J. R.; Arvidson, R. E.

    2009-12-01

    The Mars Exploration Rover (MER) Spirit has discovered deposits of bright yellowish and whitish soils that have been confirmed by Spirit’s Alpha Particle X-Ray Spectrometer (APXS), Mössbauer spectrometer, and Miniature Thermal Emission Spectrometer (Mini-TES) instruments to contain ferric sulfates and/or opaline silica. These deposits have important implications for the history of water at Gusev Crater, as they have been interpreted by Squyres et al. (2008, Science, 316, 738) to have formed in a hydrothermal environment. Repeated Pancam 11 color visible to short-wave near-IR observations have been made at the Tyrone, Kit Carson and Ulysess soil exposures, and changes in Vis-NIR spectra and/or soil texture and morphology have been observed at all three sites. We have identified at least three possible explanations for the observed changes: 1) dust deposition; 2) aeolian sorting; and/or 3) a mineralogic change after exposure to martian surface conditions. To better characterize how and why these soils are changing with time, we present a detailed multispectral analysis of the seven Pancam image sequences at Tyrone, the two at Kit Carson, and the nine at Ulysses that have been acquired as of sol 2000 (August 18, 2009). At the Tyrone “yellow” soil, the blue-to-red (432 to 753 nm) spectral slope decreased after roughly 175 sols of exposure to the martian surface, as described by Wang et al. (2008, JGR, 114, 461). This spectral change is contrary to the “reddening” that would be expected from dust deposition, but could be consistent with dehydration pathways of certain ferric sulfates, such as from copiapite to amorphous ferric sulfates or to rhomboclase (Wang et al., 2008, AGU). The Tyrone “yellow” soil also exhibits increased 535 nm and 803 nm band depths with time, which is further suggestive of a mineralogic change. Pancam spectra of Kit Carson appear to have changed similarly to those of Tyrone, with 535 nm and 864 nm absorptions developing after four

  2. Quantitative in situ determination of hydration of bright high-sulfate Martian soils

    NASA Astrophysics Data System (ADS)

    Campbell, J. L.; Gellert, R.; Lee, M.; Mallett, C. L.; Maxwell, J. A.; O'Meara, J. M.

    2008-04-01

    The total water content of soils and rocks encountered by the Spirit rover has been determined by a new analysis method applied to the existing data from the Alpha Particle X-Ray Spectrometer (APXS). This approach employs Monte Carlo simulation of the intensities of the photon scatter peaks in the APXS spectra, together with extraction of these intensities from the spectra. For any individual sample, the water detection limits (~6 wt %) and error bars are high due to low counting statistics in the spectra, but combining the data from a well-defined group of similar samples improves the error bars and lowers the limit. Thus typical basaltic surface soils are found to be essentially dry (<1 wt % water) and basaltic rocks are very close to dry (<3.5 wt % water). For four bright subsurface soils in Gusev Crater the water content lies in the range 6-18 wt % these soils contain sulfur at unusually high levels (>12 wt %, 30 wt % SO3) relative to the soils common at other landing sites. Mass balance mixing calculations of available cations infer the presence of Fe-, Mg-, and Ca-sulfates in these bright soils. Together with constraints from mineralogy, our results imply that highly hydrated ferric sulfates are the most important carrier of the bound water found in these four spots. In conjunction with the complementary available chemical and mineralogical information they reveal additional information about present bound water reservoirs on Mars, their mineralogy and their spatial and lateral distribution along the Spirit rover's traverse.

  3. Dissipation and transformation of 17B-estradiol-17-sulfate in soil-water systems

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Estrogen conjugates are known to be precursors of endocrine-disrupting free estrogens, e.g. 17B-estradiol (E2) and estrone (E1), in the environment. This study investigated the fate of a sulfate conjugated estrogen, 17B-estradiol-17-sulfate (E2-17S), in agricultural soils using laboratory batch stu...

  4. Effectiveness of the bran media and bacteria inoculum treatments in increasing pH and reducing sulfur-total of acid sulfate soils

    NASA Astrophysics Data System (ADS)

    Taufieq, Nur Anny Suryaningsih; Rahim, Sahibin Abdul; Jamil, Habibah

    2013-11-01

    This study was carried out to determine the effectiveness ofsulfate reducing bacteria (SRB) in using bran as a source of food and energy, and to see the effectiveness of the bran media and bacteria inoculums treatments for pH and sulfur-total of acid sulfate reduction insoils. This study used two factors in group random designs with four treatments for bacteria inoculum of B1 (1%), B2 (5%), B3 (10%), B4 (15%) and two treatments for organic media (bran) of D1 (1:1) and D2 (1:19). Based on three replications, the combination resulted in a total of 24 treatments. Soil pH was measured using the Duddridge and Wainright method and determination of sulfate content in soil was conducted by the spectrophotometry method. The data obtained was analyzed for significance by Analysis of Variance and the Least Significant Difference Test. The pH of the initial acid sulfate soils ranged from 3 to 4 and the soil sulfur-total ranged from 1.4% to 10%. After mixing sulfate reducing bacteria with the bran mediaand incubated for four days, the pH of the acid sulfate soils increased from 3.67 to 4.20, while the soil sulfur-total contents had been reduced by 2.85% to 0.35%. This experiment has proven that an acid sulfate soil with low pH is a good growth medium for the sulfate reducing bacteria. The bestincubation period to achieve an effective bioremediation resultthrough sulfate percentage reduction by sulfate reducing bacteria was 10 days, while the optimum bran media dose was 1:19, and the bacteria inoculums dose was 10%.

  5. Sulfates hydrating bulk soil in the Martian low and middle latitudes

    NASA Astrophysics Data System (ADS)

    Karunatillake, S.; Wray, J. J.; Gasnault, O.; McLennan, S. M.; Rogers, A. D.; Squyres, S. W.; Boynton, W. V.; Skok, J. R.; Ojha, L.; Olsen, N.

    2014-11-01

    The evidence for sulfate-bearing strata, across Late-Noachian to Amazonian eons, suggests a central role for sulfates in acidity and salinity of Martian paleofluids and the planet's habitability. However, details remain unclear owing to shallow sampling and the limited ability of visible/near-infrared spectroscopy to distinguish among some sulfates. Using chemical data from the Mars Odyssey gamma ray spectrometer, including the sulfur map of Mars, we confirm the possibility of hydrous sulfates acting as key hydrates throughout the southern midlatitudinal soil at decimeter depths. An H2O:S molar ratio between 2.4 and 4.0 for 80% of the midlatitudes is also consistent with hydrous sulfate phases, including the many Fe sulfates hydrated in this range or mixtures of Ca and Mg sulfates. Nevertheless, hydrous Fe sulfates could explain our observations in a simpler manner relative to Ca/Mg mixtures. Furthermore, phyllosilicates, zeolites, amorphous phases, and H2O(s) do not seem to be strong candidates to explain the H-S variations. Consequently, we speculate that sulfates, as the primary contributor of H2O in bulk soil, may influence modern aqueous processes including warm-season slope lineae in the southern hemisphere.

  6. Sulfate-reducing bacteria in rice field soil and on rice roots.

    PubMed

    Wind, T; Stubner, S; Conrad, R

    1999-05-01

    Rice plants that were grown in flooded rice soil microcosms were examined for their ability to exhibit sulfate reducing activity. Washed excised rice roots showed sulfate reduction potential when incubated in anaerobic medium indicating the presence of sulfate-reducing bacteria. Rice plants, that were incubated in a double-chamber (phylloshpere and rhizosphere separated), showed potential sulfate reduction rates in the anoxic rhizosphere compartment. These rates decreased when oxygen was allowed to penetrate through the aerenchyma system of the plants into the anoxic root compartment, indicating that sulfate reducers on the roots were partially inhibited by oxygen or that sulfate was regenerated by oxidation of reduced S-compounds. The potential activity of sulfate reducers on rice roots was consistent with MPN enumerations showing that H2-utilizing sulfate-reducing bacteria were present in high numbers on the rhizoplane (4.1 x 10(7) g-1 root fresh weight) and in the adjacent rhizosperic soil (2.5 x 10(7) g-1 soil dry weight). Acetate-oxidizing sulfate reducers, on the other hand, showed highest numbers in the unplanted bulk soil (1.9 x 10(6) g-1 soil dry weight). Two sulfate reducing bacteria were isolated from the highest dilutions of the MPN series and were characterized physiologically and phylogenetically. Strain F1-7b which was isolated from the rhizoplane with H2 as electron donor was related to subgroup II of the family Desulfovibrionaceae. Strain EZ-2C2, isolated from the rhizoplane on acetate, grouped together with Desulforhabdus sp. and Syntrophobacter wolinii. Other strains of sulfate-reducing bacteria originated from bulk soil of rice soil microcosms and were isolated using different electron donors. From these isolates, strains R-AcA1, R-IbutA1, R-PimA1 and R-AcetonA170 were Gram-positive bacteria which were affiliated with the genus Desulfotomaculum. The other isolates were members of subgroup II of the Desulfovibrionaceae (R-SucA1 and R-LacA1), were

  7. Applying high resolution SyXRD analysis on sulfate attacked concrete field samples

    SciTech Connect

    Stroh, J.; Schlegel, M.-C.; Irassar, E.F.; Meng, B.; Emmerling, F.

    2014-12-15

    High resolution synchrotron X-ray diffraction (SyXRD) was applied for a microstructural profile analysis of concrete deterioration after sulfate attack. The cement matrices consist of ordinary Portland cement and different amounts of supplementary cementitious materials, such as fly ash, natural pozzolana and granulated blast furnace slag. The changes of the phase composition were determined along the direction of sulfate ingress. This approach allows the identification of reaction fronts and zones of different phase compositions and conclusions about the mechanisms of sulfate attack. Two reaction fronts were localized in the initial 4 mm from the sample surface. The mechanism of deterioration caused by the exposition in the sulfate-bearing soil is discussed. SyXRD is shown to be a reliable method for investigation of cementitious materials with aggregates embedded in natural environments.

  8. Potential for Sulfate Reduction in Mangrove Forest Soils: Comparison between Two Dominant Species of the Americas

    PubMed Central

    Balk, Melike; Keuskamp, Joost A.; Laanbroek, Hendrikus J.

    2016-01-01

    Avicennia and Rhizophora are globally occurring mangrove genera with different traits that place them in different parts of the intertidal zone. It is generally accepted that the oxidizing capacity of Avicennia roots is larger than that of Rhizophora roots, which initiates more reduced conditions in the soil below the latter genus. We hypothesize that the more reduced conditions beneath Rhizophora stands lead to more active sulfate-reducing microbial communities compared to Avicennia stands. To test this hypothesis, we measured sulfate reduction traits in soil samples collected from neighboring Avicennia germinans and Rhizophora mangle stands at three different locations in southern Florida. The traits measured were sulfate reduction rates (SRR) in flow-through reactors containing undisturbed soil layers in the absence and presence of easily degradable carbon compounds, copy numbers of the dsrB gene, which is specific for sulfate-reducing microorganisms, and numbers of sulfate-reducing cells that are able to grow in liquid medium on a mixture of acetate, propionate and lactate as electron donors. At the tidal locations Port of the Islands and South Hutchinson Islands, steady state SRR, dsrB gene copy numbers and numbers of culturable cells were higher at the A. germinans than at the R. mangle stands, although not significantly for the numbers at Port of the Islands. At the non-tidal location North Hutchinson Island, results are mixed with respect to these sulfate reduction traits. At all locations, the fraction of culturable cells were significantly higher at the R. mangle than at the A. germinans stands. The dynamics of the initial SRR implied a more in situ active sulfate-reducing community at the intertidal R. mangle stands. It was concluded that in agreement with our hypothesis R. mangle stands accommodate a more active sulfate-reducing community than A. germinans stands, but only at the tidal locations. The differences between R. mangle and A. germinans stands

  9. Impact of mitigation strategies on acid sulfate soil chemistry and microbial community.

    PubMed

    Wu, Xiaofen; Sten, Pekka; Engblom, Sten; Nowak, Pawel; Österholm, Peter; Dopson, Mark

    2015-09-01

    Potential acid sulfate soils contain reduced iron sulfides that if oxidized, can cause significant environmental damage by releasing large amounts of acid and metals. This study examines metal and acid release as well as the microbial community capable of catalyzing metal sulfide oxidation after treating acid sulfate soil with calcium carbonate (CaCO3) or calcium hydroxide (Ca(OH)2). Leaching tests of acid sulfate soil samples were carried out in the laboratory. The pH of the leachate during the initial flushing with water lay between 3.8 and 4.4 suggesting that the jarosite/schwertmannite equilibrium controls the solution chemistry. However, the pH increased to circa 6 after treatment with CaCO3 suspension and circa 12 after introducing Ca(OH)2 solution. 16S rRNA gene sequences amplified from community DNA extracted from the untreated and both CaCO3 and Ca(OH)2 treated acid sulfate soils were most similar to bacteria (69.1% to 85.7%) and archaea (95.4% to 100%) previously identified from acid and metal contaminated environments. These species included a Thiomonas cuprina-like and an Acidocella-like bacteria as well as a Ferroplasma acidiphilum-like archeon. Although the CaCO3 and Ca(OH)2 treatments did not decrease the proportion of microorganisms capable of accelerating acid and metal release, the chemical effects of the treatments suggested their reduced activity.

  10. Alleviating aluminum toxicity in an acid sulfate soil from Peninsular Malaysia by calcium silicate application

    NASA Astrophysics Data System (ADS)

    Elisa, A. A.; Ninomiya, S.; Shamshuddin, J.; Roslan, I.

    2016-03-01

    In response to human population increase, the utilization of acid sulfate soils for rice cultivation is one option for increasing production. The main problems associated with such soils are their low pH values and their associated high content of exchangeable Al, which could be detrimental to crop growth. The application of soil amendments is one approach for mitigating this problem, and calcium silicate is an alternative soil amendment that could be used. Therefore, the main objective of this study was to ameliorate soil acidity in rice-cropped soil. The secondary objective was to study the effects of calcium silicate amendment on soil acidity, exchangeable Al, exchangeable Ca, and Si content. The soil was treated with 0, 1, 2, and 3 Mg ha-1 of calcium silicate under submerged conditions and the soil treatments were sampled every 30 days throughout an incubation period of 120 days. Application of calcium silicate induced a positive effect on soil pH and exchangeable Al; soil pH increased from 2.9 (initial) to 3.5, while exchangeable Al was reduced from 4.26 (initial) to 0.82 cmolc kg-1. Furthermore, the exchangeable Ca and Si contents increased from 1.68 (initial) to 4.94 cmolc kg-1 and from 21.21 (initial) to 81.71 mg kg-1, respectively. Therefore, it was noted that calcium silicate was effective at alleviating Al toxicity in acid sulfate, rice-cropped soil, yielding values below the critical level of 2 cmolc kg-1. In addition, application of calcium silicate showed an ameliorative effect as it increased soil pH and supplied substantial amounts of Ca and Si.

  11. Effects of sulfate and selenite on mercury methylation in a mercury-contaminated rice paddy soil under anoxic conditions.

    PubMed

    Wang, Yongjie; Dang, Fei; Zhong, Huan; Wei, Zhongbo; Li, Ping

    2016-03-01

    Biogeochemical cycling of sulfur and selenium (Se) could play an important role in methylmercury (MeHg) dynamics in soil, while their potential effects on MeHg production in rice paddy soil are less understood. The main objective of this study was to explore the effects of sulfate and selenite on net MeHg production in contaminated rice paddy soil, characterized with massive MeHg production and thus MeHg accumulation in rice. A series of microcosm incubation experiments were conducted using a contaminated paddy soil amended with sulfate and/or selenite, in which sulfate-reducing bacteria were mainly responsible for MeHg production. Our results demonstrated that sulfate addition reduced solid and dissolved MeHg levels in soils by ≤18 and ≤25 %, respectively. Compared to sulfate, selenite was more effective in inhibiting net MeHg production, and the inhibitory effect depended largely on amended selenite doses. Moreover, sulfate input played a dual role in affecting Hg-Se interactions in soil, which could be explained by the dynamics of sulfate under anoxic conditions. Therefore, the effects of sulfate and selenium input should be carefully considered when assessing risk of Hg in anoxic environments (e.g., rice paddy field and wetland).

  12. Response of the sulfate-reducing community to the re-establishment of estuarine conditions in two contrasting soils: a mesocosm approach.

    PubMed

    Miletto, Marzia; Loeb, Roos; Antheunisse, A Martjin; Bodelier, Paul L E; Laanbroek, Hendrikus J

    2010-01-01

    We studied the response of the sulfate-reducing prokaryote (SRP) communities to the experimental variation of salinity and tide in an outdoor mesocosm setup. Intact soil monoliths were collected at two areas of the Haringvliet lagoon (The Netherlands): one sampling location consisted of agricultural grassland, drained and fertilized for at least the last century; the other of a freshwater marshland with more recent sea influence. Two factors, i.e., "salinity" (freshwater/oligohaline) and "tide" (nontidal/tidal), were tested in a full-factorial design. Soil samples were collected after 5 months (June-October). Dissimilatory (bi)sulfite reductase beta subunit-based denaturing gradient gel electrophoresis (dsrB-DGGE) analysis revealed that the SRP community composition in the agricultural grassland and in the freshwater marshland was represented mainly by microorganisms related to the Desulfobulbaceae and the Desulfobacteraceae, respectively. Desulfovibrio-related dsrB were detected only in the tidal treatments; Desulfomonile-related dsrB occurrence was related to the presence of oligohaline conditions. Treatments did have an effect on the overall SRP community composition of both soils, but not on the sulfate depletion rates in sulfate-amended anoxic slurry incubations. However, initiation of sulfate reduction upon sulfate addition was clearly different between the two soils.

  13. Persistent endosulfan sulfate is found with highest abundance among endosulfan I, II, and sulfate in German forest soils.

    PubMed

    Bussian, Bernd M; Pandelova, Marchela; Lehnik-Habrink, Petra; Aichner, Bernhard; Henkelmann, Bernhard; Schramm, Karl-Werner

    2015-11-01

    Endosulfan - an agricultural insecticide and banned by Stockholm Convention - is produced as a 2:1 to 7:3 mixture of isomers endosulfan I (ESI) and endosulfan II (ESII). Endosulfan is transformed under aerobic conditions into endosulfan sulfate (ESS). The study shows for 76 sampling locations in German forests that endosulfan is abundant in all samples with an opposite ratio between the ESI and ESII than the technical product, where the main metabolite ESS is found with even higher abundance. The ratio between ESI/ESII and ESS show clear dependence on the type of stands (coniferous vs. deciduous) and humus type and increases from deciduous via mixed to coniferous forest stands. The study argues for a systematic monitoring of ESI, ESII, and ESS and underlines the need for further research, specifically on the fate of endosulfan including biomagnifications and bioaccumulation in soil.

  14. Residue inventories for alpha-, beta-Endosulfan and their metabolite endosulfan sulfate in Chinese surface soil

    NASA Astrophysics Data System (ADS)

    Jia, Hongliang; Tian, Chongguo; Li, Yi-Fan

    2010-05-01

    Endosulfan is currently-used organochlorine pesticide in China, with annual usage of 2,300 t between 1994 and 2004. A gridded mass balance model, Gridded PTSs (persistent toxic substances) Emission and Residue Model (GPERM), has been applied to create gridded inventories of residues in soil for two endosulfan isomers, alpha- and beta-endosulfan, on a 1/4 degree longitude and 1/6 degree latitude resolution (approximate 24 km by 24 km) by using Chinese gridded annual usage inventories of endosulfan on the same resolution as input. In order to evaluate these inventories, soil samples were collected from 92 sites (70 for rural and 22 for urban) across China in 2005, and concentrations of alpha-, beta-endosulfan and their metabolite endosulfan sulfate were measured. Measured soil concentrations of both alpha- and beta-endosulfan match well with their modeled data, and the results show that, at the 0.05 level, no significant difference was found between monitored and modeled results. Significant correlations found between measured data for endosulfan sulfate and beta-endosulfan in Chinese soil and also between monitored and modeled datasets for beta-endosulfan, inventories of endosulfan sulfate in Chinese agricultural soil in 2005 with a 1/4 degree × 1/6 degree longitude and latitude resolution have been established, which correlate significantly with their related monitoring data in the same grid cells. To our knowledge, this is the first soil concentration inventories for endosulfan sulfate, which will pave the way for further study of this chemical.

  15. Solubility of adsorbed sulfate in coastal plain soils

    SciTech Connect

    Camberato, J.J.; Kamprath, E.J.

    1986-10-01

    Ultisols of the Atlantic Coastal Plain have sandy surface horizons low in Ca(H/sub 2/PO/sub 4/)/sub 2/-extractable SO/sub 4//sup 2 -/ and clayey subsoil horizons high in extractable SO/sub 4//sup 2 -/. The capacity of the subsoils to supply adequate S is dependent upon the solubility of the extractable SO/sub 4//sup 2 -/. To assess the solubility of adsorbed SO/sub 4//sup 2 -/ in Coastal Plain soils, the authors collected samples from the Ap and B horizons of 12 sites and determined Ca(H/sub 2/PO/sub 4/)/sub 2/-extractable and water-soluble SO/sub 4//sup 2 -/. The Ap horizon contained 2 to 7 mg kg/sup -1/ of Ca(H/sub 2/PO/sub 4/)/sub 2/-extractable SO/sub 4//sup 2 -/-S, which ranged from 33 to 100% water soluble, with an average of 79%. The B horizon Ca(H/sub 2/PO/sub 4/)/sub 2/-extractable SO/sub 4//sup 2 -/-S levels ranged from 26 to 142 mg kg/sup -1/ soil. The solubility of the adsorbed SO/sub 4//sup 2 -/-S in the B horizons ranged from 0.203 to 0.359 mM L/sup -1/ SO/sub 4//sup 2 -/-S, which is adequate to supply plant requirements for S if plant roots can gain access to the B horizon.

  16. Toward understanding the influence of soil metals and sulfate content on plant thiols.

    PubMed

    Hunaiti, Abdelrahim A; Al-Oqlah, Ahmed; Shannag, Noor M; Abukhalaf, Imad K; Silvestrov, Natalia A; von Deutsch, Daniel A; Bayorh, Mohamed A

    2007-03-15

    Plants respond to increased concentrations of metals by a number of mechanisms, including chelation with phytochelatins (PCs). Soil specimens and plants (Veronica anagalis-aquatica, Typha domingensis, Cynodon dactylon, Chenopodium album, Rumex dentatus, Amaranthus gracilis, Chenopodium murale, Inula viscosa) leaves were collected from two sites in northern Jordan and subsequently metals (cadmium, copper, and lead), sulfate, and PC (from leaves) levels were determined. One of these sites was contaminated with metals and the other served as a control site. The contaminated site had elevated cadmium, copper, lead, and sulfate levels. This increase of metal and sulfate levels in the soil at the contaminated site correlated with a rise in plant total glutathione (GSH(T)) and cysteine (CYS(T)). These increases were not attributed to an elevation in total phytochelatin levels. However, a significant increase in the ratio of short-chain phytochelatins to the total phytochelatin stores was observed. The individual effects of metals and sulfate on glutathione, short-chain PCs and long-chain PCs levels were dissimilar.

  17. Modeling coupled sorption and transformation of 17β-estradiol-17-sulfate in soil-water systems

    NASA Astrophysics Data System (ADS)

    Bai, Xuelian; Shrestha, Suman L.; Casey, Francis X. M.; Hakk, Heldur; Fan, Zhaosheng

    2014-11-01

    Animal manure is the primary source of exogenous free estrogens in the environment, which are known endocrine-disrupting chemicals to disorder the reproduction system of organisms. Conjugated estrogens can act as precursors to free estrogens, which may increase the total estrogenicity in the environment. In this study, a comprehensive model was used to simultaneously simulate the coupled sorption and transformation of a sulfate estrogen conjugate, 17β-estradiol-17-sulfate (E2-17S), in various soil-water systems (non-sterile/sterile; topsoil/subsoil). The simulated processes included multiple transformation pathways (i.e. hydroxylation, hydrolysis, and oxidation) and mass transfer between the aqueous, reversibly sorbed, and irreversibly sorbed phases of all soils for E2-17S and its metabolites. The conceptual model was conceived based on a series of linear sorption and first-order transformation expressions. The model was inversely solved using finite difference to estimate process parameters. A global optimization method was applied for the inverse analysis along with variable model restrictions to estimate 36 parameters. The model provided a satisfactory simultaneous fit (R2adj = 0.93 and d = 0.87) of all the experimental data and reliable parameter estimates. This modeling study improved the understanding on fate and transport of estrogen conjugates under various soil-water conditions.

  18. Soil Remediation of an Arsenic-Contaminated Site With Ferrous Sulfate and Type V Portland Cement

    NASA Astrophysics Data System (ADS)

    Illera, V.; O'Day, P. A.; Rivera, N.; Root, R.; Rafferty, M. T.; Vlassopoulos, D.

    2005-12-01

    High levels of arsenic are present in a site adjacent to San Francisco Bay (in East Palo Alto, CA) as a consequence of the activity of a former pesticide manufacturing plant. Most of the readily accessible arsenic at the site has been removed by remedial excavation and surface capping. In-situ fixation of residual arsenic was performed close to the source about 10 years ago where arsenic values in capped soils ranged from 500 to 5000 mg kg-1. The fixation method consisted of the addition of ferrous sulfate (3% w/w), type V Portland cement (10% w/w) and water. Both products were mixed with the contaminated soil to a treatment depth between 1.5 and 9 meters. The treated soil was then capped to prevent weathering. This long-term amended soil offers an opportunity to compare the processes that prevent microbial arsenic reduction and control the immobilization of arsenic in the treated soils versus natural soils, and to study the aging effects of arsenic sorption. Solid phase characterization of soil samples from both the field and controlled laboratory experiments were carried out to study the speciation and bioavailability of arsenic and to ascertain the mechanisms of the arsenic immobilization in the treated soil. These methods included physical description by field observations, X-ray diffraction (XRD), scanning electron microscopy with energy dispersive spectroscopy, total elemental concentrations, and solid phase fractionation by sequential extraction. Both synchrotron X-ray absorption spectroscopy (XAS) and XRD measurements were used to determine oxidation state of arsenic and iron and host phases present in the soil. The remedial treatment was successful in immobilizing the arsenic in the contaminated soil, and decreasing its leachability. Measurements taken at short aging times (during the first month) showed that the treatment was effective in reducing leachable arsenic as evidenced by the TCLP wet test (< 5 mg l-1 leached). The field amendment influenced

  19. Decomposition of Copper (II) Sulfate Pentahydrate: A Sequential Gravimetric Analysis.

    ERIC Educational Resources Information Center

    Harris, Arlo D.; Kalbus, Lee H.

    1979-01-01

    Describes an improved experiment of the thermal dehydration of copper (II) sulfate pentahydrate. The improvements described here are control of the temperature environment and a quantitative study of the decomposition reaction to a thermally stable oxide. Data will suffice to show sequential gravimetric analysis. (Author/SA)

  20. Analysis of Saprolegnia parasitica Transcriptome following Treatment with Copper Sulfate

    PubMed Central

    Ye, Xin; Sun, Qi; Yuan, Hai-Lan; Liang, Nan; Fang, Wen-Hong; Li, Hao-Ran; Yang, Xian-Le

    2016-01-01

    Background Massive infection caused by oomycete fungus Saprolegnia parasitica is detrimental to freshwater fish. Recently, we showed that copper sulfate demonstrated good efficacy for controlling S. parasitica infection in grass carp. In this study, we investigated the mechanism of inhibition of S. parasitica growth by copper sulfate by analyzing the transcriptome of copper sulfate—treated S. parasitica. To examine the mechanism of copper sulfate inhibiting S. parasitica, we utilized RNA-seq technology to compare differential gene expression in S. parasitica treated with or without copper sulfate. Results The total mapped rates of the reads with the reference genome were 90.50% in the control group and 73.50% in the experimental group. In the control group, annotated splice junctions, partial novel splice junctions and complete novel splice junctions were about 83%, 3% and 14%, respectively. In the treatment group, the corresponding values were about 75%, 6% and 19%. Following copper sulfate treatment, a total 310 genes were markedly upregulated and 556 genes were markedly downregulated in S. parasitica. Material metabolism related GO terms including cofactor binding (33 genes), 1,3-beta-D-glucan synthase complex (4 genes), carboxylic acid metabolic process (40 genes) were the most significantly enriched. KEGG pathway analysis also determined that the metabolism-related biological pathways were significantly enriched, including the metabolic pathways (98 genes), biosynthesis of secondary metabolites pathways (42 genes), fatty acid metabolism (13 genes), phenylalanine metabolism (7 genes), starch and sucrose metabolism pathway (12 genes). The qRT-PCR results were largely consistent with the RNA-Seq results. Conclusion Our results indicate that copper sulfate inhibits S. parasitica growth by affecting multiple biological functions, including protein synthesis, energy biogenesis, and metabolism. PMID:26895329

  1. Soil-derived sulfate in atmospheric dust particles at Taklimakan desert

    NASA Astrophysics Data System (ADS)

    Wu, Feng; Zhang, Daizhou; Cao, Junji; Xu, Hongmei; An, Zhisheng

    2012-12-01

    Dust-associated sulfate is believed to be a key species which can alter the physical and chemical properties of dust particles in the atmosphere. Its occurrence in the particles has usually been considered to be the consequence of particles' aging in the air although it is present in some crustal minerals. Our observation at the north and south edge of Taklimakan desert, one of the largest dust sources in the Northern Hemisphere, during a dust episode in April 2008 revealed that sulfate in atmospheric dust samples most likely originated directly from surface soil. Its TSP, PM10 and PM2.5 content was proportional to samples' mass and comprised steadily about 4% in the differently sized samples, the ratio of elemental sulfur to iron was approximately constant 0.3, and no demonstrable influence of pollutants from fossil fuel combustion and biomass burning was detected. These results suggest that sulfate could be substantially derived from surface soil at the desert area and the lack of awareness of this origin may impede accurate results in any investigation of atmospheric sulfur chemistry associated with Taklimakan dust and its subsequent local, regional and global effects on the atmosphere.

  2. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms.

    PubMed

    Hausmann, Bela; Knorr, Klaus-Holger; Schreck, Katharina; Tringe, Susannah G; Glavina Del Rio, Tijana; Loy, Alexander; Pester, Michael

    2016-10-01

    Dissimilatory sulfate reduction in peatlands is sustained by a cryptic sulfur cycle and effectively competes with methanogenic degradation pathways. In a series of peat soil microcosms incubated over 50 days, we identified bacterial consortia that responded to small, periodic additions of individual fermentation products (formate, acetate, propionate, lactate or butyrate) in the presence or absence of sulfate. Under sulfate supplementation, net sulfate turnover (ST) steadily increased to 16-174 nmol cm(-3) per day and almost completely blocked methanogenesis. 16S rRNA gene and cDNA amplicon sequencing identified microorganisms whose increases in ribosome numbers strongly correlated to ST. Natively abundant (⩾0.1% estimated genome abundance) species-level operational taxonomic units (OTUs) showed no significant response to sulfate. In contrast, low-abundance OTUs responded significantly to sulfate in incubations with propionate, lactate and butyrate. These OTUs included members of recognized sulfate-reducing taxa (Desulfosporosinus, Desulfopila, Desulfomonile, Desulfovibrio) and also members of taxa that are either yet unknown sulfate reducers or metabolic interaction partners thereof. Most responsive OTUs markedly increased their ribosome content but only weakly increased in abundance. Responsive Desulfosporosinus OTUs even maintained a constantly low population size throughout 50 days, which suggests a novel strategy of rare biosphere members to display activity. Interestingly, two OTUs of the non-sulfate-reducing genus Telmatospirillum (Alphaproteobacteria) showed strongly contrasting preferences towards sulfate in butyrate-amended microcosms, corroborating that closely related microorganisms are not necessarily ecologically coherent. We show that diverse consortia of low-abundance microorganisms can perform peat soil sulfate reduction, a process that exerts control on methane production in these climate-relevant ecosystems.

  3. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

    SciTech Connect

    Hausmann, Bela; Knorr, Klaus-Holger; Schreck, Katharina; Tringe, Susannah G.; Glavina del Rio, Tijana; Loy, Alexander; Pester, Michael

    2016-03-25

    A cryptic sulfur cycle and effectively competes with methanogenic degradation pathways sustains dissimilatory sulfate reduction in peatlands. In a series of peat soil microcosms incubated over 50 days, we identified bacterial consortia that responded to small, periodic additions of individual fermentation products (formate, acetate, propionate, lactate or butyrate) in the presence or absence of sulfate. Under sulfate supplementation, net sulfate turnover (ST) steadily increased to 16–174 nmol cm–3 per day and almost completely blocked methanogenesis. 16S rRNA gene and cDNA amplicon sequencing identified microorganisms whose increases in ribosome numbers strongly correlated to ST. Natively abundant (greater than or equal to0.1% estimated genome abundance) species-level operational taxonomic units (OTUs) showed no significant response to sulfate. In contrast, low-abundance OTUs responded significantly to sulfate in incubations with propionate, lactate and butyrate. These OTUs included members of recognized sulfate-reducing taxa (Desulfosporosinus, Desulfopila, Desulfomonile, Desulfovibrio) and also members of taxa that are either yet unknown sulfate reducers or metabolic interaction partners thereof. The most responsive OTUs markedly increased their ribosome content but only weakly increased in abundance. Responsive Desulfosporosinus OTUs even maintained a constantly low population size throughout 50 days, which suggests a novel strategy of rare biosphere members to display activity. Interestingly, two OTUs of the non-sulfate-reducing genus Telmatospirillum (Alphaproteobacteria) showed strongly contrasting preferences towards sulfate in butyrate-amended microcosms, corroborating that closely related microorganisms are not necessarily ecologically coherent. We show that diverse consortia of low-abundance microorganisms can perform peat soil sulfate reduction, a process that exerts control on methane production in these climate-relevant ecosystems.

  4. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

    DOE PAGES

    Hausmann, Bela; Knorr, Klaus-Holger; Schreck, Katharina; ...

    2016-03-25

    A cryptic sulfur cycle and effectively competes with methanogenic degradation pathways sustains dissimilatory sulfate reduction in peatlands. In a series of peat soil microcosms incubated over 50 days, we identified bacterial consortia that responded to small, periodic additions of individual fermentation products (formate, acetate, propionate, lactate or butyrate) in the presence or absence of sulfate. Under sulfate supplementation, net sulfate turnover (ST) steadily increased to 16–174 nmol cm–3 per day and almost completely blocked methanogenesis. 16S rRNA gene and cDNA amplicon sequencing identified microorganisms whose increases in ribosome numbers strongly correlated to ST. Natively abundant (greater than or equal to0.1%more » estimated genome abundance) species-level operational taxonomic units (OTUs) showed no significant response to sulfate. In contrast, low-abundance OTUs responded significantly to sulfate in incubations with propionate, lactate and butyrate. These OTUs included members of recognized sulfate-reducing taxa (Desulfosporosinus, Desulfopila, Desulfomonile, Desulfovibrio) and also members of taxa that are either yet unknown sulfate reducers or metabolic interaction partners thereof. The most responsive OTUs markedly increased their ribosome content but only weakly increased in abundance. Responsive Desulfosporosinus OTUs even maintained a constantly low population size throughout 50 days, which suggests a novel strategy of rare biosphere members to display activity. Interestingly, two OTUs of the non-sulfate-reducing genus Telmatospirillum (Alphaproteobacteria) showed strongly contrasting preferences towards sulfate in butyrate-amended microcosms, corroborating that closely related microorganisms are not necessarily ecologically coherent. We show that diverse consortia of low-abundance microorganisms can perform peat soil sulfate reduction, a process that exerts control on methane production in these climate-relevant ecosystems.« less

  5. Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms

    PubMed Central

    Hausmann, Bela; Knorr, Klaus-Holger; Schreck, Katharina; Tringe, Susannah G; Glavina del Rio, Tijana; Loy, Alexander; Pester, Michael

    2016-01-01

    Dissimilatory sulfate reduction in peatlands is sustained by a cryptic sulfur cycle and effectively competes with methanogenic degradation pathways. In a series of peat soil microcosms incubated over 50 days, we identified bacterial consortia that responded to small, periodic additions of individual fermentation products (formate, acetate, propionate, lactate or butyrate) in the presence or absence of sulfate. Under sulfate supplementation, net sulfate turnover (ST) steadily increased to 16–174 nmol cm–3 per day and almost completely blocked methanogenesis. 16S rRNA gene and cDNA amplicon sequencing identified microorganisms whose increases in ribosome numbers strongly correlated to ST. Natively abundant (⩾0.1% estimated genome abundance) species-level operational taxonomic units (OTUs) showed no significant response to sulfate. In contrast, low-abundance OTUs responded significantly to sulfate in incubations with propionate, lactate and butyrate. These OTUs included members of recognized sulfate-reducing taxa (Desulfosporosinus, Desulfopila, Desulfomonile, Desulfovibrio) and also members of taxa that are either yet unknown sulfate reducers or metabolic interaction partners thereof. Most responsive OTUs markedly increased their ribosome content but only weakly increased in abundance. Responsive Desulfosporosinus OTUs even maintained a constantly low population size throughout 50 days, which suggests a novel strategy of rare biosphere members to display activity. Interestingly, two OTUs of the non-sulfate-reducing genus Telmatospirillum (Alphaproteobacteria) showed strongly contrasting preferences towards sulfate in butyrate-amended microcosms, corroborating that closely related microorganisms are not necessarily ecologically coherent. We show that diverse consortia of low-abundance microorganisms can perform peat soil sulfate reduction, a process that exerts control on methane production in these climate-relevant ecosystems. PMID:27015005

  6. The relation between soil sulfate concentration and proanthocyanidin content of Selliguea feei Bory from around Ratu crater, Mount Tangkuban Perahu

    NASA Astrophysics Data System (ADS)

    Novianti, Vivi; Choesin, Devi N.

    2014-03-01

    Proanthocyanidin is a chemical compound with a basic flavan-3-ol structure formed from flavonoid secondary metabolism in plants, with potential for human use because of its anti-hypertension, analgesic, anti-inflammatory and antioxidant activities. Considering the fact that S. feei contains proanthocynidin and grows abundantly around Ratu Crater, Mount Tangkuban Perahu, which actively emits S02 gas, this study aimed to see the relation between soil sulfate concentration and proanthocyanidin content in leaves and rhizomes of S. feei. Field sampling was conducted in 1 m2 plots at elevations of 1400, 1600 m above sea level (100 m distance from sulfur source), 1700, 1800 and 1900 m a.s.l. (75 m from sulfur source). Measurements included soil sulfate concentration, proanthocyanidin content of rhizomes and leaves, and environmental factors. An experiment was conducted by planting S. feei from the field into polybags which were then given treatments of sterile plant media with varying sulfate concentrations (0 ppm, 100 ppm, 250 ppm, 400 ppm, 600 ppm, and 800 ppm). Proanthocyanidin content of S. feei leaves and rhizomes were measured on the third, sixth and ninth week. Soil sulfate concentrations were found to be very high (428.22 - 992.91 ppm) with values increasing according to altitude. Proanthocyanidin content in rhizomes were higher than in leaves, in both field and experimental data. Soil sulfate concentrations correlated positively and significantly with proanthocyanidin content in rhizomes of S. feei. As in the field, experimental results indicated no correlation or relation between soil sulfate concentration and proanthocyanidin content in leaves. Besides soil sulfate concentration, environmental factors have a role in incresing peoanthocyanidin content of S.feei. Proanthocyanidin content of S.feei rhizomes could be classified as being very high, thus having potential to be developed as raw material in medicine and food industries.

  7. Analysis of Drosophila glucuronyl C5-epimerase: implications for developmental roles of heparan sulfate sulfation compensation and 2-O-sulfated glucuronic acid.

    PubMed

    Dejima, Katsufumi; Takemura, Masahiko; Nakato, Eriko; Peterson, Jesse; Hayashi, Yoshiki; Kinoshita-Toyoda, Akiko; Toyoda, Hidenao; Nakato, Hiroshi

    2013-11-29

    During the biosynthesis of heparan sulfate (HS), glucuronyl C5-epimerase (Hsepi) catalyzes C5-epimerization of glucuronic acid (GlcA), converting it to iduronic acid (IdoA). Because HS 2-O-sulfotransferase (Hs2st) shows a strong substrate preference for IdoA over GlcA, C5-epimerization is required for normal HS sulfation. However, the physiological significance of C5-epimerization remains elusive. To understand the role of Hsepi in development, we isolated Drosophila Hsepi mutants. Homozygous mutants are viable and fertile with only minor morphological defects, including the formation of an ectopic crossvein in the wing, but they have a short lifespan. We propose that two mechanisms contribute to the mild phenotypes of Hsepi mutants: HS sulfation compensation and possible developmental roles of 2-O-sulfated GlcA (GlcA2S). HS disaccharide analysis showed that loss of Hsepi resulted in a significant impairment of 2-O-sulfation and induced compensatory increases in N- and 6-O-sulfation. Simultaneous block of Hsepi and HS 6-O-sulfotransferase (Hs6st) activity disrupted tracheoblast formation, a well established FGF-dependent process. This result suggests that the increase in 6-O-sulfation in Hsepi mutants is critical for the rescue of FGF signaling. We also found that the ectopic crossvein phenotype can be induced by expression of a mutant form of Hs2st with a strong substrate preference for GlcA-containing units, suggesting that this phenotype is associated with abnormal GlcA 2-O-sulfation. Finally, we show that Hsepi formed a complex with Hs2st and Hs6st in S2 cells, raising the possibility that this complex formation contributes to the close functional relationships between these enzymes.

  8. Modeling Sorption and Degradation of 17β-Estradiol-17-Sulfate in Agricultural Soils

    NASA Astrophysics Data System (ADS)

    Bai, X.; Casey, F. X.; Hakk, H.; Shrestha, S. L.; DeSutter, T.; Khan, E.; Oduor, P. G.

    2011-12-01

    The natural steroid hormone, 17β-estradiol (E2), can be an endocrine disruptor at part-per trillion levels. Laboratory studies indicate a low potential for E2 persistence and mobility in the environment; however, field studies consistently indicate the presence of E2 and its primary metabolite, estrone, at levels sufficiently high to impact water quality. To facilitate urine excretion, animals may release E2 as a sulfated conjugate, which would have a higher aqueous solubility than the parent compound. We hypothesize that E2 conjugates contribute to the detection of free estrogens in the environment. The objective of this study was to determine the sorption, degradation, and mobility of a model conjugate, 17β-estradiol-17-sulfate (E2-17S), in agricultural soils. Radiolabeled E2-17S ([14C]E2-17S) was chemically synthesized in a three-step process, and then batch experiments were conducted in natural and sterile soils. Additionally, soil organic carbon (OC) was varied (1.29 and 0.26%) to investigate its effect on the fate of [14C]E2-17S. Liquid scintillation counting (LSC) was used in concert with high performance liquid chromatography (HPLC) to detect and quantitate parent compound and metabolites of E2-17S in the aqueous and bound phases. Residual soil was combusted to determine non-extractable levels of 14C. The E2-17S was relatively stable in the aqueous phase for natural and sterile soils. Mono- and di- hydroxyl E2-17S were detected as metabolites of E2-17S in the aqueous phase above both sterile and natural soil. Deconjugation to form E2 was not observed in aqueous phase; however, E2 and estrone were extracted from both natural and sterile soils. A conceptual model was developed to simulate and identify the fate and transport processes of E2-17S. Organic carbon was found to be an important factor affecting the sorption and degradation of E2-17S in soils.

  9. Use of organic substrates as electron donors for biological sulfate reduction in gypsiferous mine soils from Nakhon Si Thammarat (Thailand).

    PubMed

    Kijjanapanich, Pimluck; Annachhatre, Ajit P; Esposito, Giovanni; Lens, Piet N L

    2014-04-01

    Soils in some mining areas contain a high gypsum content, which can give adverse effects to the environment and may cause many cultivation problems, such as a low water retention capacity and low fertility. The quality of such mine soils can be improved by reducing the soil's gypsum content. This study aims to develop an appropriate in situ bioremediation technology for abbreviating the gypsum content of mine soils by using sulfate reducing bacteria (SRB). The technology was applied to a mine soil from a gypsum mine in the southern part of Thailand which contains a high sulfate content (150 g kg(-1)). Cheap organic substrates with low or no cost, such as rice husk, pig farm wastewater treatment sludge and coconut husk chips were mixed (60:20:20 by volume) and supplied to the soil as electron donors for the SRB. The highest sulfate removal efficiency of 59% was achieved in the soil mixed with 40% organic mixture, corresponding to a reduction of the soil gypsum content from 25% to 7.5%. For economic gains, this treated soil can be further used for agriculture and the produced sulfide can be recovered as the fertilizer elemental sulfur.

  10. Effect of liming on sulfate transformation and sulfur gas emissions in degraded vegetable soil treated by reductive soil disinfestation.

    PubMed

    Meng, Tianzhu; Zhu, Tongbin; Zhang, Jinbo; Cai, Zucong

    2015-10-01

    Reductive soil disinfestation (RSD), namely amending organic materials and mulching or flooding to create strong reductive status, has been widely applied to improve degraded soils. However, there is little information available about sulfate (SO4(2-)) transformation and sulfur (S) gas emissions during RSD treatment to degraded vegetable soils, in which S is generally accumulated. To investigate the effects of liming on SO4(2-) transformation and S gas emissions, two SO4(2-)-accumulated vegetable soils (denoted as S1 and S2) were treated by RSD, and RSD plus lime, denoted as RSD0 and RSD1, respectively. The results showed that RSD0 treatment reduced soil SO4(2-) by 51% and 61% in S1 and S2, respectively. The disappeared SO4(2-) was mainly transformed into the undissolved form. During RSD treatment, hydrogen sulfide (H2S), carbonyl sulfide (COS), and dimethyl sulfide (DMS) were detected, but the total S gas emission accounted for <0.006% of total S in both soils. Compared to RSD0, lime addition stimulated the conversion of SO4(2-) into undissolved form, reduced soil SO4(2-) by 81% in S1 and 84% in S2 and reduced total S gas emissions by 32% in S1 and 57% in S2, respectively. In addition to H2S, COS and DMS, the emissions of carbon disulfide, methyl mercaptan, and dimethyl disulfide were also detected in RSD1 treatment. The results indicated that RSD was an effective method to remove SO4(2-), liming stimulates the conversion of dissolved SO4(2-) into undissolved form, probably due to the precipitation with calcium.

  11. m-Xylylenediaminium sulfate: crystal structure and Hirshfeld surface analysis.

    PubMed

    Guesmi, Afef; Gatfaoui, Sofian; Roisnel, Thierry; Marouani, Houda

    2016-06-01

    The crystal structure of the title salt {systematic name: [1,3-phenyl-enebis(methyl-ene)]bis-(aza-nium) sulfate}, C8H14N2 (2+)·SO4 (2-), consists of infinite (100) sheets of alternating organic and inorganic entities The m-xylylenediaminium cations are linked to the sulfate anions by N-H⋯O and asymmetric bifurcated N-H⋯(O,O) hydrogen bonds, generating a three-dimensional network. A weak C-H⋯O inter-action also occurs. The Hirshfeld surface analysis and the two-dimensional fingerprint maps indicate that the packing is dominated by H⋯O/O⋯H and H⋯H contacts.

  12. m-Xylylenediaminium sulfate: crystal structure and Hirshfeld surface analysis

    PubMed Central

    Guesmi, Afef; Gatfaoui, Sofian; Roisnel, Thierry; Marouani, Houda

    2016-01-01

    The crystal structure of the title salt {systematic name: [1,3-phenyl­enebis(methyl­ene)]bis­(aza­nium) sulfate}, C8H14N2 2+·SO4 2−, consists of infinite (100) sheets of alternating organic and inorganic entities The m-xylylenediaminium cations are linked to the sulfate anions by N—H⋯O and asymmetric bifurcated N—H⋯(O,O) hydrogen bonds, generating a three-dimensional network. A weak C—H⋯O inter­action also occurs. The Hirshfeld surface analysis and the two-dimensional fingerprint maps indicate that the packing is dominated by H⋯O/O⋯H and H⋯H contacts. PMID:27308040

  13. The Soil Chemical Response to Decreases in Atmospheric Sulfate deposition Across the Northeastern United States

    NASA Astrophysics Data System (ADS)

    McHale, M. R.; Siemion, J.; Lawrence, G. B.; Mast, A.

    2012-12-01

    Data from National Atmospheric Deposition (NADP) stations show that since implementation of the Clean Air Act Amendments of 1990 there has been a steady decline in sulfate and nitrate concentrations in precipitation across the northeastern United States. Those decreases have become more pronounced during the last 10 years. There have also been decreasing trends in sulfate and less so nitrate stream-water concentrations during the same period at 3 U.S. Geological Survey Hydrologic Benchmark Network stream gaging stations. These stations are co-located with NADP stations in western Pennsylvania (Young Woman's Creek, YWC), the Catskill Mountains of New York (Neversink River, NR), and in northwestern Maine (Wild River, WR). Precipitation was most acidic at YWC (mean pH in 2010 of 4.68 at YWC, 4.88 at NR, and 4.97 at WR) while stream water was most acidic at WR (mean pH from 1999 to 2010 of 6.08 at WR, 6.19 at NR, and 6.72 at YWC). Soil samples were collected at each site in 2001 and again 10 years later in 2011 in the A and upper B-horizons at two to three locations in each watershed, at an upslope location, a mid-slope location, and in the case of NR also at a lower slope location. Replicate samples were collected from 5 pits at each site. At YWC the site with the lowest precipitation pH and the highest stream-water pH there were clear changes in soil acidity during the last 10 years. There was a decrease in soil pH of 0.7 pH units in the A-horizon of ridge top soils and 0.2 pH units in the mid slope soils while pH increased a mean of 0.2 pH units at both locations in the B-horizon. At NR, the site with intermediate precipitation and stream-water pH, there was a general decrease in soil pH in the A-horizon at the ridge top, mid slope, and lower slope locations although those changes were not as pronounced as those from YWC. Although B-horizon soil pH increased at the ridge top site in NR there were no clear changes in acidity of the mid or lower slope locations. At

  14. Sulfur-accumulating plants convert sulfate salts from soils into environmentally resilient biominerals

    NASA Astrophysics Data System (ADS)

    Robson, Thomas; Reid, Nathan; Stevens, Jason; Dixon, Kingsley

    2016-04-01

    Sulfur-accumulator plants (thiophores), which accumulate atypically high sulfur and calcium concentrations in their aerial biomass, may be suitable for revegetating and phytostabilising reactive sulfur-enriched substrates such as mine tailings, acid-sulfate soils and polluted soils. We present biogeochemical insights on thiophores from the Australian Great Sandy Desert, which accumulate up to 40 times as much sulfur (2-5 %S) versus comparator species. X-ray microanalyses revealed this accumulation relates to peculiar gypsum-like mineralisation throughout their foliage, illustrating a mechanism for sulfate removal from soils and sequestration as sparingly soluble biominerals. However, we did not know whether these species treat the excess Ca/S as a waste to be shed with senescent litter and, if so, how resilient these 'biominerals' are to photo-biodegradation once shed and so to what extent the accumulated elements are recycled back into the reactive/bioavailable sulfate reservoir. To address these questions, we sampled four foliage (phyllode) fractions from ten individuals of the thiophore, Acacia bivenosa: healthy mature phyllodes, senescent phyllodes on the branch, recently shed and older, more degraded ground litter. We selected two thiophores (A. bivenosa and A. robeorum) and a non-thiophore (A. ancistrocarpa) for detailed soil/regolith studies. Samples were collected from trenches bisected by each tree, taken from varying depth (20-500 mm) and distance from the stem (0.1-5 m). Dried foliage was cleaned, sectioned for SEM-EDXS examination and elemental compositions of foliage and soils were determined (microwave-assisted acid digestion + ICP-OES/MS). Each species generated a 'halo' of elevated S/Ca in the soil immediately beneath their crowns, although that of A. ancistrocarpa was of minor magnitude. These anomalies were confined to shallow soil (20-50 mm i.e. influenced by litter), suggesting limited S/Ca re-mobilisation from the litter. Foliar elemental

  15. Redox transformation, solid phase speciation and solution dynamics of copper during soil reduction and reoxidation as affected by sulfate availability

    NASA Astrophysics Data System (ADS)

    Fulda, Beate; Voegelin, Andreas; Ehlert, Katrin; Kretzschmar, Ruben

    2013-12-01

    In periodically flooded soils, interactions of Cu with biogenic sulfide formed during soil reduction lead to the precipitation of sparingly soluble Cu-sulfides. In contaminated soils, however, the amounts of Cu can exceed the amount of sulfate available for microbial reduction to sulfide. In laboratory batch experiments, we incubated a paddy soil spiked to ∼4.4 mmol kg-1 (280 mg kg-1) Cu(II) to monitor temporal changes in the concentrations of dissolved Cu and the speciation of solid-phase Cu during 40 days of soil reduction and 28 days of reoxidation as a function of initially available reducible sulfate (0.06, 2.09 or 5.92 mmol kg-1). Using Cu K-edge EXAFS spectroscopy, we found that a large fraction of Cu(II) became rapidly reduced to Cu(I) (23-39%) and Cu(0) (7-17%) before the onset of sulfate reduction. Combination with results from sequential Cu extraction and chromium reducible sulfur (CRS) data suggested that complexation of Cu(I) by reduced organic S groups (Sorg) may be an important process during this early stage. In sulfate-depleted soil, Cu(0) and Cu(I)-Sorg remained the dominant species over the entire reduction period, whereas in soils with sufficient sulfate, initially formed Cu(0) and (remaining) Cu(II) became transformed into Cu-sulfide during continuing sulfate reduction. The formation of Cu(0), Cu(I)-Sorg, and Cu-sulfide led to an effective decrease in dissolved Cu concentrations. Differences in Cu speciation at the end of soil reduction however affected the dynamics of Cu during reoxidation. Whereas Cu(0) was rapidly oxidized to Cu(II), more than half of the S-coordinated Cu fraction persisted over 14 days of aeration. Our results show that precipitation of Cu(0) and complexation of Cu(I) by reduced organic S groups are important processes in periodically flooded soils if sulfide formation is limited by the amount of available sulfate or the duration of soil flooding. The speciation changes of Cu described in this study may also affect the

  16. Groundwater or floodwater? Assessing the pathways of metal exports from a coastal acid sulfate soil catchment.

    PubMed

    Santos, Isaac R; de Weys, Jason; Eyre, Bradley D

    2011-11-15

    Daily observations of dissolved aluminum, iron, and manganese in an estuary downstream of a coastal acid sulfate soil (CASS) catchment provided insights into how floods and submarine groundwater discharge drive wetland metal exports. Extremely high Al, Fe, and Mn concentrations (up to 40, 374, and 8 mg L(-1), respectively) were found in shallow acidic groundwaters from the Tuckean Swamp, Australia. Significant correlations between radon (a natural groundwater tracer) and metals in surface waters revealed that metal loads were driven primarily by groundwater discharge. Dissolved Fe, Mn, and Al loads during a 16-day flood triggered by a 213 mm rain event were respectively 80, 35, and 14% of the total surface water exports during the four months of observations. Counter clockwise hysteresis was observed for Fe and Mn in surface waters during the flood due to delayed groundwater inputs. Groundwater-derived Fe fluxes into artificial drains were 1 order of magnitude higher than total surface water exports, which is consistent with the known accumulation of monosulfidic black ooze within the wetland drains. Upscaling the Tuckean catchment export estimates yielded dissolved Fe fluxes from global acid sulfate soil catchments on the same order of magnitude of global river inputs into estuaries.

  17. Influence of metal ions and pH on the hydraulic properties of potential acid sulfate soils

    NASA Astrophysics Data System (ADS)

    Le, T. M. H.; Collins, R. N.; Waite, T. D.

    2008-07-01

    SummaryAcid sulfate soils (ASS) cover extensive areas of east Australian coastal floodplains. Upon oxidation, these hydromorphic pyritic sediments produce large quantities of sulfuric acid. In addition, due to their geographic location, these soils may also come in contact with high ionic strength estuarine tidal waters. As a result, there is typically a large variation in acidity (pH) and cation concentrations in soil porewaters and adjacent aquatic systems (e.g., agricultural field drains, rivers, estuaries, etc.). Acid sulfate soils, especially from the unoxidized gelatinous deeper layers, contain a relatively high proportion of montmorillonite, which is wellknown for its shrink-swell properties. Variations in cation concentrations, including H3O+, can influence montmorillonite platelet interactions and may, thus, also significantly affect the hydraulic conductivity of materials containing this clay. In this paper we report on the effect of four common cations, at reasonable environmental concentrations, on the hydraulic properties of potential (unoxidized) acid sulfate soil materials. The natural system was simplified by examining individually the effects of each cation (H+, Ca2+, Fe2+ and Na+) on a soil-water suspension in a filtration cell unit. Moisture ratio, hydraulic conductivity and the consolidation coefficient of the deposited filter cakes were calculated using material coordinates theory. The results indicate that the hydraulic conductivity of potential acid sulfate soils increases at low pH and with cation concentration. Although an increase in the charge of amphoteric edge groups on montmorillonite clays may result in some aggregation between individual clay platelets, we conclude that the extent of these changes are unlikely to cause significant increases in the transportation of acidity (and contaminants) through potential acid sulfate soils as the hydraulic conductivity of these materials remain low (<10-9 m/s) at pH and ionic conditions normally

  18. Annual sulfate budgets for Dutch lowland peat polders: The soil is a major sulfate source through peat and pyrite oxidation

    NASA Astrophysics Data System (ADS)

    Vermaat, Jan E.; Harmsen, Joop; Hellmann, Fritz A.; van der Geest, Harm G.; de Klein, Jeroen J. M.; Kosten, Sarian; Smolders, Alfons J. P.; Verhoeven, Jos T. A.; Mes, Ron G.; Ouboter, Maarten

    2016-02-01

    Annual sulfate mass balances have been constructed for four low-lying peat polders in the Netherlands, to resolve the origin of high sulfate concentrations in surface water, which is considered a water quality problem, as indicated amongst others by the absence of sensitive water plant species. Potential limitation of these plants to areas with low sulfate was analyzed with a spatial match-up of two large databases. The peat polders are generally used for dairy farming or nature conservation, and have considerable areas of shallow surface water (mean 16%, range 6-43%). As a consequence of continuous drainage, the peat in these polders mineralizes causing subsidence rates generally ranging between 2 and 10 mm y-1. Together with pyrite oxidation, this peat mineralization the most important internal source of sulfate, providing an estimated 96 kg SO4 ha-1 mm-1 subsidence y-1. External sources are precipitation and water supplied during summer to compensate for water shortage, but these were found to be minor compared to internal release. The most important output flux is discharge of excess surface water during autumn and winter. If only external fluxes in and out of a polder are evaluated, inputs average 37 ± 9 and exports 169 ± 17 kg S ha-1 y-1. During summer, when evapotranspiration exceeds rainfall, sulfate accumulates in the unsaturated zone, to be flushed away and drained off during the wet autumn and winter. In some polders, upward seepage from early Holocene, brackish sediments can be a source of sulfate. Peat polders export sulfate to the regional water system and the sea during winter drainage. The available sulfate probably only plays a minor role in the oxidation of peat: we estimate that this is less than 10% whereas aerobic mineralization is the most important. Most surface waters in these polders have high sulfate concentrations, which generally decline during the growing season when aquatic sediments are a sink. In the sediment, this sulfur is

  19. Mineralogical, chemical, organic and microbial properties of subsurface soil cores from Mars Desert Research Station (Utah, USA): Phyllosilicate and sulfate analogues to Mars mission landing sites

    NASA Astrophysics Data System (ADS)

    Stoker, Carol R.; Clarke, Jonathan; Direito, Susana O. L.; Blake, David; Martin, Kevin R.; Zavaleta, Jhony; Foing, Bernard

    2011-07-01

    We collected and analysed soil cores from four geologic units surrounding Mars Desert Research Station (MDRS) Utah, USA, including Mancos Shale, Dakota Sandstone, Morrison formation (Brushy Basin member) and Summerville formation. The area is an important geochemical and morphological analogue to terrains on Mars. Soils were analysed for mineralogy by a Terra X-ray diffractometer (XRD), a field version of the CheMin instrument on the Mars Science Laboratory (MSL) mission (2012 landing). Soluble ion chemistry, total organic content and identity and distribution of microbial populations were also determined. The Terra data reveal that Mancos and Morrison soils are rich in phyllosilicates similar to those observed on Mars from orbital measurements (montmorillonite, nontronite and illite). Evaporite minerals observed include gypsum, thenardite, polyhalite and calcite. Soil chemical analysis shows sulfate the dominant anion in all soils and SO4>>CO3, as on Mars. The cation pattern Na>Ca>Mg is seen in all soils except for the Summerville where Ca>Na. In all soils, SO4 correlates with Na, suggesting sodium sulfates are the dominant phase. Oxidizable organics are low in all soils and range from a high of 0.7% in the Mancos samples to undetectable at a detection limit of 0.1% in the Morrison soils. Minerals rich in chromium and vanadium were identified in Morrison soils that result from diagenetic replacement of organic compounds. Depositional environment, geologic history and mineralogy all affect the ability to preserve and detect organic compounds. Subsurface biosphere populations were revealed to contain organisms from all three domains (Archaea, Bacteria and Eukarya) with cell density between 3.0×106 and 1.8×107 cells ml-1 at the deepest depth. These measurements are analogous to data that could be obtained on future robotic or human Mars missions and results are relevant to the MSL mission that will investigate phyllosilicates on Mars.

  20. Separation and quantitative analysis of alkyl sulfate ethoxymers by HPLC.

    PubMed

    Morvan, Julien; Hubert-Roux, Marie; Agasse, Valérie; Cardinael, Pascal; Barbot, Florence; Decock, Gautier; Bouillon, Jean-Philippe

    2008-01-01

    Separation of alkyl sulfate ethoxymers is investigated on various high-performance liquid chromatography (HPLC) stationary phases: Acclaim C18 Surfactant, Surfactant C8, and Hypercarb. For a fixed alkyl chain length, ethoxymers are eluted in the order of increasing number of ethoxylated units on Acclaim C18 Surfactant, whereas a reversed elution order is observed on Surfactant C8 and Hypercarb. Moreover, on an Acclaim C18 Surfactant column, non-ethoxylated compounds are eluted in their ethoxymers distribution and the use of sodium acetate additive in mobile phase leads to a co-elution of ethoxymers. HPLC stationary phases dedicated to surfactants analysis are evaluated by means of the Tanaka test. Surfactant C8 presents a great silanol activity whereas Acclaim C18 Surfactant shows a high steric selectivity. For alkyl sulfates, linearity of the calibration curve and limits of detection and quantitation are evaluated. The amount of sodium laureth sulfate raw material found in commercial body product is in agreement with the specification of the manufacturer.

  1. Redox-controlled changes in cadmium solubility and solid-phase speciation in a paddy soil as affected by reducible sulfate and copper.

    PubMed

    Fulda, Beate; Voegelin, Andreas; Kretzschmar, Ruben

    2013-11-19

    The solubility of Cd in contaminated paddy soils controls Cd uptake by rice, which is an important food safety issue. We investigated the solution and solid-phase dynamics of Cd in a paddy soil spiked with ∼20 mg kg(-1) Cd during 40 days of soil reduction followed by 28 days of soil reoxidation as a function of the amounts of sulfate available for microbial reduction and of Cu that competes with Cd for precipitation with biogenic sulfide. At an excess of sulfate over (Cd + Cu), dissolved Cd decreased during sulfate reduction and Cd was transformed into a poorly soluble phase identified as Cd-sulfide using Cd K-edge X-ray absorption spectroscopy (XAS). The extent of Cd-sulfide precipitation decreased with decreasing sulfate and increasing Cu contents, even if sulfate exceeded Cd. When both Cu and Cd exceeded sulfate, dissolved and mobilizable Cd remained elevated after 40 days of soil reduction. During soil reoxidation, Cd-sulfide was readily transformed back into more soluble species. Our data suggest that Cd-sulfide formation in flooded paddy soil may be limited when the amounts of Cd and other chalcophile metals significantly exceed reducible sulfate Therefore, in multimetal contaminated paddy soils with low sulfate contents, Cd may remain labile during soil flooding, which enhances the risk for Cd transfer into rice.

  2. Possible Association of Ferrous Phosphates and Ferric Sulfates in S-rich Soil on Mars

    NASA Astrophysics Data System (ADS)

    Mao, J.; Schroeder, C.; Haderlein, S.

    2012-12-01

    NASA Mars Exploration Rover (MER) Spirit explored Gusev Crater to look for signs of ancient aqueous activity, assess past environmental conditions and suitability for life. Spirit excavated light-toned, S-rich soils at several locations. These are likely of hydrothermal, possibly fumarolic origin. At a location dubbed Paso Robles the light-toned soil was also rich in P - a signature from surrounding rock. While S is mainly bound in ferric hydrated sulfates [1], the mineralogy of P is ill-constrained [2]. P is a key element for life and its mineralogy constrains its availability. Ferrous phases observed in Paso Robles Mössbauer spectra may represent olivine and pyroxene from surrounding basaltic soil [1] or ferrous phosphate minerals [3]. Phosphate is well-known to complex and stabilize Fe 2+ against oxidation to Fe 3+ . Schröder et al. [3] proposed a formation pathway of ferrous phosphate/ferric sulfate associations: sulfuric acid reacts with basalt containing apatite, forming CaSO4 and phosphoric acid. The phosphoric and/or excess sulfuric acid reacts with olivine, forming Fe2+-phosphate and sulfate. The phosphate is less soluble and precipitates. Ferrous sulfate remains in solution and is oxidized as pH increases. To verify this pathway, we dissolved Fe2+-chloride and Na-phosphate salts in sulfuric acid inside an anoxic glovebox. The solution was titrated to pH 6 by adding NaOH when a first precipitate formed, which was ferrous phosphate according to Mössbauer spectroscopy (MB). At that point the solution was removed from the glovebox and allowed to evaporate in the presence of atmospheric oxygen, leading to the oxidation of Fe2+. The evaporation rate was controlled by keeping the suspensions at different temperatures; pH was monitored during the evaporation process. The final precipitates were analyzed by MB and X-Ray Fluorescence (XRF), comparable to MER MB and Alpha Particle X-ray Spectrometer instrument datasets, and complementary techniques such as X

  3. Exchangeable and secondary mineral reactive pools of aluminium in coastal lowland acid sulfate soils.

    PubMed

    Yvanes-Giuliani, Yliane A M; Waite, T David; Collins, Richard N

    2014-07-01

    The use of coastal floodplain sulfidic sediments for agricultural activities has resulted in the environmental degradation of many areas worldwide. The generation of acidity and transport of aluminium (Al) and other metals to adjacent aquatic systems are the main causes of adverse effects. Here, a five-step sequential extraction procedure (SEP) was applied to 30 coastal lowland acid sulfate soils (CLASS) from north-eastern New South Wales, Australia. This enabled quantification of the proportion of aluminium present in 'water-soluble', 'exchangeable', 'organically-complexed', 'reducible iron(III) (oxyhydr)oxide/hydroxysulfate-incorporated' and 'amorphous Al mineral' fractions. The first three extractions represented an average of 5% of 'aqua regia' extractable Al and their cumulative concentrations were extremely high, reaching up to 4000 mg·kg(-1). Comparison of Al concentrations in the final two extractions indicated that 'amorphous Al minerals' are quantitatively a much more important sink for the removal of aqueous Al derived from the acidic weathering of these soils than reducible Fe(III) minerals. Correlations were observed between soil pH, dissolved and total organic carbon (DOC and TOC) and Al concentrations in organic carbon-rich CLASS soil horizons. These results suggest that complexation of Al by dissolved organic matter significantly increases soluble Al concentrations at pH values >5.0. As such, present land management practices would benefit with redefinition of an 'optimal' soil from pH ≥5.5 to ~4.8 for the preservation of aquatic environments adjacent to organic-rich CLASS where Al is the sole or principle inorganic contaminant of concern. Furthermore, it was observed that currently-accepted standard procedures (i.e. 1 M KCl extraction) to measure exchangeable Al concentrations in these types of soils severely underestimate exchangeable Al and a more accurate representation may be obtained through the use of 0.2 M CuCl2.

  4. Microbial Sulfate Reduction at Cold Seeps Based on Analysis of Carbonate Associated Sulfate

    NASA Astrophysics Data System (ADS)

    Feng, D.; Peng, Y.

    2014-12-01

    Microbial sulfate reduction and coupled anaerobic oxidation of methane (AOM) are the dominant biogeochemical processes occurring at cold seeps in marine settings. These processes not only support the growth of chemosynthetic communities but also promote the precipitation of authigenic carbonates. However, investigations of microbial sulfate reduction have been conducted only using porewaters or seep-related barites. The fact is that many seeps are either inactive or do not precipitate any barite minerals. Thus, little is known about the microbial sulfate reduction at these seep environments. The occurrence of authigenic carbonate has been documented at almost all cold seep sites, which provide a unique opportunity to investigate the microbial sulfate reduction using such carbonate. The presentation is focused on the concentrations and isotopic signatures of carbonate associated sulfate (CAS). The aim of the project is to determine the role of sulfate and sulfate reduction during carbonate precipitation at cold seeps. The CAS concentrations are 67-537 ppm in high-Mg calcite, 51-181 ppm in low-Mg calcite, and 116-565 in aragonite. The δ34SCAS and δ18OCAS also vary considerably, ranging from 21.9‰ to 56.2‰ (V-CDT) and from 10.1‰ to 24.8‰ (V-SMOW), respectively. On δ34SCAS versus δ18OCAS plots, both aragonite and calcite show linear trends that project down toward those of open seawater sulfate. The trends suggest that sulfate has been isotopically modified to various degrees in pore fluids before being incorporated into carbonate lattice. The much narrower δ34SCAS and δ18OCAS ranges for aragonite than for calcite suggests a much "pickier" condition for aragonite formation during early diagenesis. Our results suggest that concentration and isotopic composition of CAS in seep carbonates may be controlled by the supply of pore-water sulfate during carbonate precipitation. The reliability of CAS in carbonate of early diagenetic origin as a proxy of

  5. Reactive transport controls on sandy acid sulfate soils and impacts on shallow groundwater quality

    NASA Astrophysics Data System (ADS)

    Salmon, S. Ursula; Rate, Andrew W.; Rengel, Zed; Appleyard, Steven; Prommer, Henning; Hinz, Christoph

    2014-06-01

    Disturbance or drainage of potential acid sulfate soils (PASS) can result in the release of acidity and degradation of infrastructure, water resources, and the environment. Soil processes affecting shallow groundwater quality have been investigated using a numerical code that integrates (bio)geochemical processes with water, solute, and gas transport. The patterns of severe and persistent acidification (pH < 4) in the sandy, carbonate-depleted podzols of a coastal plain could be reproduced without calibration, based on oxidation of microcrystalline pyrite after groundwater level decrease and/or residual groundwater acidity, due to slow vertical solute transport rates. The rate of acidification was limited by gas phase diffusion of oxygen and hence was sensitive to soil water retention properties and in some cases also to oxygen consumption by organic matter mineralization. Despite diffusion limitation, the rate of oxidation in sandy soils was rapid once pyrite-bearing horizons were exposed, even to a depth of 7.5 m. Groundwater level movement was thus identified as an important control on acidification, as well as the initial pyrite content. Increase in the rate of Fe(II) oxidation lead to slightly lower pH and greater accumulation of Fe(III) phases, but had little effect on the overall amount of pyrite oxidized. Aluminosilicate (kaolinite) dissolution had a small pH-buffering effect but lead to the release of Al and associated acidity. Simulated dewatering scenarios highlighted the potential of the model for risk assessment of (bio)geochemical impacts on soil and groundwater over a range of temporal and spatial scales.

  6. Assessing the combination of iron sulfate and organic materials as amendment for an arsenic and copper contaminated soil. A chemical and ecotoxicological approach.

    PubMed

    Fresno, Teresa; Moreno-Jiménez, Eduardo; Peñalosa, Jesús M

    2016-12-01

    The efficiency of combining iron sulfate and organic amendments (paper mill sludge, olive mill waste compost and olive tree pruning biochar) for the remediation of an As- and Cu-contaminated soil was evaluated. Changes in As and Cu fractionation and solubility due to the application of the amendments was explored by leachate analysis, single and sequential extractions. Also, the effects on Arrhenatherum elatius growth, germination of Lactuca sativa and toxicity to the bacteria Vibrio fischeri were assessed. The combination of iron sulfate and the organic amendments efficiently reduced As solubility and availability through the formation of amorphous iron oxides, while organic matter did not seem to mobilize As. At the same time, copper fractionation was strongly affected by soil pH and organic matter addition. The soil pH significantly influenced both As and Cu mobility. Within all the amendments tested, FeSO4 in combination with compost showed to be the most suitable treatment for the overall remediation process, as it reduced As and Cu availability andenhanced soil nutrient concentrations and plant growth. In sipte of contradictory trends between chemical analyses and ecotoxicity tests, we can still conclude that the application of organic amendments in combination with reactive iron salts is a suitable approach for the remediation of soils contaminated by Cu and As.

  7. Plant Uptake and Distribution of Endosulfan and Its Sulfate Metabolite Persisted in Soil

    PubMed Central

    Hwang, Jeong-In; Lee, Sung-Eun; Kim, Jang-Eok

    2015-01-01

    The distributions of endosulfan (ED) residues (α-, β-isomers, and sulfate-metabolite) in cucumbers grown in soils treated with ED at concentrations of 20 and 40 mg kg-1 were assessed using indoor and outdoor experiments. In all treatments, degradation rates of the α-isomer in soils were higher than that of the β-isomer. In the indoor tests, uptake amounts of total ED by cucumbers, after 15 d of growth, were 7.8 and 14.5 mg kg-1 in 20 and 40 mg kg-1-treated pots, respectively. For growth time from 15 to 30 d, uptake amounts in 20 and 40 mg kg-1-treated pots were 3.8 and 7.9 mg kg-1, respectively. Outdoor tests resulted in smaller ED residues in cucumbers than those in indoor tests. In both indoor and outdoor tests, ED residues absorbed were highest in roots, and the α-isomer was the more frequently absorbed isomer. These results will be useful for determining management criteria for soil persistent pesticides. PMID:26529511

  8. Identifying sources of acidity and spatial distribution of acid sulfate soils in the Anglesea River catchment, southern Australia

    NASA Astrophysics Data System (ADS)

    Wong, Vanessa; Yau, Chin; Kennedy, David

    2015-04-01

    Globally, coastal and estuarine floodplains are frequently underlain by sulfidic sediments. When exposed to oxygen, sulfidic sediments oxidise to form acid sulfate soils, adversely impacting on floodplain health and adjacent aquatic ecoystems. In eastern Australia, our understanding of the formation of these coastal and estuarine floodplains, and hence, spatial distribution of acid sulfate soils, is relatively well established. These soils have largely formed as a result of sedimentation of coastal river valleys approximately 6000 years BP when sea levels were one to two metres higher. However, our understanding of the evolution of estuarine systems and acid sulfate soil formation, and hence, distribution, in southern Australia remains limited. The Anglesea River, in southern Australia, is subjected to frequent episodes of poor water quality and low pH resulting in closure of the river and, in extreme cases, large fish kill events. This region is heavily reliant on tourism and host to a number of iconic features, including the Great Ocean Road and Twelve Apostles. Poor water quality has been linked to acid leakage from mining activities and Tertiary-aged coal seams, peat swamps and acid sulfate soils in the region. However, our understanding of the sources of acidity and distribution of acid sulfate soils in this region remains poor. In this study, four sites on the Anglesea River floodplain were sampled, representative of the main vegetation communities. Peat swamps and intertidal marshes were both significant sources of acidity on the floodplain in the lower catchment. However, acid neutralising capacity provided by carbonate sands suggests that there are additional sources of acidity higher in the catchment. This pilot study has highlighted the complexity in the links between the floodplain, upper catchment and waterways with further research required to understand these links for targeted acid management strategies.

  9. Biochemical and molecular characterization of potential phosphate-solubilizing bacteria in acid sulfate soils and their beneficial effects on rice growth.

    PubMed

    Panhwar, Qurban Ali; Naher, Umme Aminun; Shamshuddin, Jusop; Jusop, Shamshuddin; Othman, Radziah; Latif, Md Abdul; Ismail, Mohd Razi

    2014-01-01

    A study was conducted to determine the total microbial population, the occurrence of growth promoting bacteria and their beneficial traits in acid sulfate soils. The mechanisms by which the bacteria enhance rice seedlings grown under high Al and low pH stress were investigated. Soils and rice root samples were randomly collected from four sites in the study area (Kelantan, Malaysia). The topsoil pH and exchangeable Al ranged from 3.3 to 4.7 and 1.24 to 4.25 cmol(c) kg(-1), respectively, which are considered unsuitable for rice production. Total bacterial and actinomycetes population in the acidic soils were found to be higher than fungal populations. A total of 21 phosphate-solubilizing bacteria (PSB) including 19 N2-fixing strains were isolated from the acid sulfate soil. Using 16S rRNA gene sequence analysis, three potential PSB strains based on their beneficial characteristics were identified (Burkholderia thailandensis, Sphingomonas pituitosa and Burkholderia seminalis). The isolated strains were capable of producing indoleacetic acid (IAA) and organic acids that were able to reduce Al availability via a chelation process. These PSB isolates solubilized P (43.65%) existing in the growth media within 72 hours of incubation. Seedling of rice variety, MR 219, grown at pH 4, and with different concentrations of Al (0, 50 and 100 µM) was inoculated with these PSB strains. Results showed that the bacteria increased the pH with a concomitant reduction in Al concentration, which translated into better rice growth. The improved root volume and seedling dry weight of the inoculated plants indicated the potential of these isolates to be used in a bio-fertilizer formulation for rice cultivation on acid sulfate soils.

  10. Crystal structure, thermal analysis and IR spectrometric investigation of the tris(2,6-diaminopyridinium) hydrogen sulfate sulfate monohydrate

    NASA Astrophysics Data System (ADS)

    Saïd, Salem; Elleuch, Slim; Ślepokura, Katarzyna; Lis, Tadeusz; Naïli, Houcine

    2016-06-01

    The crystals of new inorganic-organic hybrid material tris(2,6-diaminopyridinium) hydrogen sulfate sulfate monohydrate (C5H8N3)3(HSO4)(SO4)·H2O, were grown by slow evaporation technique in aqueous solution. The title compound has been prepared and characterized by X-ray diffraction, IR spectroscopy and thermal analysis. The complex crystallizes in the triclinic system, space group P 1 bar , with the following cell parameters a = 8.051(3)Å, b = 10.646(4)Å, c = 14.138(6)Å, α = 73.23(3)°, β = 79.28(3)°, γ = 82.28(3)°, V = 1135.8(8)Å3 and Z = 2, T = 100 K. The crystal is built up from hydrogen sulfate anions HSO4-, sulfate anions SO42-, protonated cations (C5H8N3)+ and water molecules. In this compound, hydrogen bonding and π⋯π interactions play crucial roles in forming interesting structural patterns. Thermal analysis indicates that (C5H8N3)3(HSO4)(SO4)·H2O does not experience any structural phase transition in the temperature range measured from 25 to 700 °C. Therefore, the properties of the new phase are inconsistent with the characteristic features of the superprotonic family M3H(SO4)2.

  11. δ34S and Δ33S records of Paleozoic seawater sulfate based on the analysis of carbonate associated sulfate

    NASA Astrophysics Data System (ADS)

    Wu, Nanping; Farquhar, James; Strauss, Harald

    2014-08-01

    This study updates the δ34S and Δ33S temporal records of Paleozoic and early Mesozoic seawater sulfate using analysis of carbonate associated sulfate of biogenic and whole rock carbonate. The time resolution of carbonate samples studied here is on the order of millions of years which is longer than the timescale for homogenization of seawater sulfate-sulfur (one tenth of a million years), but is comparable to the timescale for isotope evolution of sulfate in the oceans. This δ34S record confirms the long-term decreasing trend that is discernible over the 250 million year timescale of sampling, and the Δ33S record of seawater sulfate for the Paleozoic is consistent with an average value of -0.002±0.004‰ (2σ, 540-251 Ma) that is distinct from the positive Δ33S observed today and inferred for the rest of the Cenozoic. Both δ34S and Δ33S records of seawater sulfate suggest the presence of shorter-timescale variations that occur on timescales of tens of millions of years, arguably driven by changes in intensity of sulfide oxidation in cycling of sulfur and/or by rapid changes in sulfur influx to the oceans and its associated sulfur isotopes. The Permian-Triassic boundary marks a transition in co-trajectories of δ34S and Δ33S from in-phase to anti-phase. The biogeochemical forcing that causes this is unclear. This newly calibrated record remains consistent with an earlier assertion (Wu et al., 2010) that the sulfur isotope fractionation (Δ34SSW-PY) between oceanic sulfate (δ34SSW) and coeval sedimentary pyrite (δ34SPY) was smaller during the Paleozoic than in the Cenozoic, and reached lowest values during the Carboniferous. The δ34SIN and Δ33SIN estimates of influx sulfur to the oceans afforded by the isotope mass balance model for each geologic period throughout the Paleozoic reveal a change from higher positive values of δ34SIN (more negative values of Δ33SIN, approximately -0.030‰) to lower positive values of δ34SIN (slightly negative values of

  12. Effect of glucosamine or chondroitin sulfate on the osteoarthritis progression: a meta-analysis.

    PubMed

    Lee, Young Ho; Woo, Jin-Hyun; Choi, Seong Jae; Ji, Jong Dae; Song, Gwan Gyu

    2010-01-01

    The aim of this study was to assess the structural efficacies of daily glucosamine sulfate and chondroitin sulfate in patients with knee osteoarthritis (OA). The authors surveyed randomized controlled studies that examined the effects of long-term daily glucosamine sulfate and chondroitin sulfate on joint space narrowing (JSN) in knee OA patients using the Medline and the Cochrane Controlled Trials Register, and by performing manual searches. Meta-analysis was performed using a fixed effect model because no between-study heterogeneity was evident. Six studies involving 1,502 cases were included in this meta-analysis, which consisted of two studies on glucosamine sulfate and four studies on chondroitin sulfate. Glucosamine sulfate did not show a significant effect versus controls on minimum JSN over the first year of treatment (SMD 0.078, 95% CI -0.116 to -0.273, P = 0.429). However, after 3 years of treatment, glucosamine sulfate revealed a small to moderate protective effect on minimum JSN (SMD 0.432, 95% CI 0.235-0.628, P < 0.001). The same was observed for chondroitin sulfate, which had a small but significant protective effect on minimum JSN after 2 years (SMD 0.261, 95% CI 0.131-0.392, P < 0.001). This meta-analysis of available data shows that glucosamine and chondroitin sulfate may delay radiological progression of OA of the knee after daily administration for over 2 or 3 years.

  13. Porewater geochemistry of inland Acid sulfate soils with sulfuric horizons following postdrought reflooding with freshwater.

    PubMed

    Creeper, Nathan L; Shand, Paul; Hicks, Warren; Fitzpatrick, Rob W

    2015-05-01

    Following the break of a severe drought in the Murray-Darling Basin, rising water levels restored subaqueous conditions to dried inland acid sulfate soils with sulfuric horizons (pH <3.5). Equilibrium dialysis membrane samplers were used to investigate in situ changes to soil acidity and abundance of metals and metalloids following the first 24 mo of restored subaqueous conditions. The rewetted sulfuric horizons remained severely acidified (pH ∼4) or had retained acidity with jarosite visibly present after 5 mo of continuous subaqueous conditions. A further 19 mo of subaqueous conditions resulted in only small additional increases in pH (∼0.5-1 pH units), with the largest increases occurring within the uppermost 10 cm of the soil profile. Substantial decreases in concentrations of some metal(loid)s were observed with time most likely owing to lower solubility and sorption as a consequence of the increase in pH. In deeper parts of the profiles, porewater remained strongly buffered at low pH values (pH <4.5) and experienced little progression toward anoxic circumneutral pH conditions over the 24 mo of subaqueous conditions. It is proposed that low pH conditions inhibited the activity of SO-reducing bacteria and, in turn, the in situ generation of alkalinity through pyrite production. The limited supply of alkalinity in freshwater systems and the initial highly buffered low pH conditions were also thought to be slowing recovery. The timescales involved for a sulfuric horizon rewetted by a freshwater body to recover from acidic conditions could therefore be in the order of several years.

  14. Promoting effect of foliage sprayed zinc sulfate on accumulation of sugar and phenolics in berries of Vitis vinifera cv. Merlot growing on zinc deficient soil.

    PubMed

    Song, Chang-Zheng; Liu, Mei-Ying; Meng, Jiang-Fei; Chi, Ming; Xi, Zhu-Mei; Zhang, Zhen-Wen

    2015-02-02

    The effect of foliage sprayed zinc sulfate on berry development of Vitis vinifera cv. Merlot growing on arid zone Zn-deficient soils was investigated over two consecutive seasons, 2013 and 2014. Initial zinc concentration in soil and vines, photosynthesis at three berry developmental stages, berry weight, content of total soluble solids, titratable acidity, phenolics and expression of phenolics biosynthetic pathway genes throughout the stages were measured. Foliage sprayed zinc sulfate showed promoting effects on photosynthesis and berry development of vines and the promotion mainly occurred from veraison to maturation. Zn treatments enhanced the accumulation of total soluble solids, total phenols, flavonoids, flavanols, tannins and anthocyanins in berry skin, decreasing the concentration of titratable acidity. Furthermore, foliage sprayed zinc sulfate could significantly influence the expression of phenolics biosynthetic pathway genes throughout berry development, and the results of expression analysis supported the promotion of Zn treatments on phenolics accumulation. This research is the first comprehensive and detailed study about the effect of foliage sprayed Zn fertilizer on grape berry development, phenolics accumulation and gene expression in berry skin, providing a basis for improving the quality of grape and wine in Zn-deficient areas.

  15. Quantitative Analysis of Sulfate in Water by Indirect EDTA Titration

    ERIC Educational Resources Information Center

    Belle-Oudry, Deirdre

    2008-01-01

    The determination of sulfate concentration in water by indirect EDTA titration is an instructive experiment that is easily implemented in an analytical chemistry laboratory course. A water sample is treated with excess barium chloride to precipitate sulfate ions as BaSO[subscript 4](s). The unprecipitated barium ions are then titrated with EDTA.…

  16. Effect of cyclic redox oscillations on water quality in freshwater acid sulfate soil wetlands.

    PubMed

    Karimian, Niloofar; Johnston, Scott G; Burton, Edward D

    2017-03-01

    Restoration of acid sulfate soil (ASS) wetlands by freshwater re-flooding can lead to the reformation of various Fe(II) and reduced inorganic sulfur (RIS) species in surface soil layers. However, in many locations, wetland water levels undergo large seasonal fluctuations that drive extreme redox oscillations. Newly formed RIS species [e.g. greigite, mackinawite, nano-pyrite and S(0)] and Fe(II) are vulnerable to rapid oxidation during dry periods and may generate substantial acidity. Rainfall following a dry period may then mobilise acidity and metal cations in surface waters prior to eventual recovery in pH by re-establishment of reducing conditions. We explore this dry-wet transition by subjecting soil samples from two freshwater re-flooded ASS wetlands to oxidative incubation for up to 130days followed by re-flooding simulation for 84days. During very early stages of re-flooding (up to 7days) there was an initial pulse-release of acidity, and trace metals/metalloids (Al, Mn, Zn and As). This was followed by a rapid reversion to anoxia, and Fe(III) and SO4 reducing conditions which generated alkalinity, ameliorated acidity and sequestered Fe, S, Zn, Mn and As. Field-observations of surface water quality in an ASS wetland at a sub-catchment scale also confirms re-establishment of SO4 reducing conditions and recovery of pH within ~4-8weeks of re-flooding after dry periods. These observations suggest that retaining surface water in ASS wetlands for ~8weeks after a dry-wet transition will allow sufficient time for alkalinity producing reductive processes to ameliorate most surface water acidity. Although management of freshwater re-flooded ASS wetlands in a highly dynamic climate will remain challenging over the long term and the post-remediation effectiveness of the method depends on initial soil characteristics, knowledge of the timing of redox oscillations and the associated changes in water geochemistry can be helpful for mitigating the risks to downstream

  17. Bacterial Growth at the High Concentrations of Magnesium Sulfate Found in Martian Soils

    PubMed Central

    Crisler, J.D.; Newville, T.M.; Chen, F.; Clark, B.C.

    2012-01-01

    Abstract The martian surface environment exhibits extremes of salinity, temperature, desiccation, and radiation that would make it difficult for terrestrial microbes to survive. Recent evidence suggests that martian soils contain high concentrations of MgSO4 minerals. Through warming of the soils, meltwater derived from subterranean ice-rich regolith may exist for an extended period of time and thus allow the propagation of terrestrial microbes and create significant bioburden at the near surface of Mars. The current report demonstrates that halotolerant bacteria from the Great Salt Plains (GSP) of Oklahoma are capable of growing at high concentrations of MgSO4 in the form of 2 M solutions of epsomite. The epsotolerance of isolates in the GSP bacterial collection was determined, with 35% growing at 2 M MgSO4. There was a complex physiological response to mixtures of MgSO4 and NaCl coupled with other environmental stressors. Growth also was measured at 1 M concentrations of other magnesium and sulfate salts. The complex responses may be partially explained by the pattern of chaotropicity observed for high-salt solutions as measured by agar gelation temperature. Select isolates could grow at the high salt concentrations and low temperatures found on Mars. Survival during repetitive freeze-thaw or drying-rewetting cycles was used as other measures of potential success on the martian surface. Our results indicate that terrestrial microbes might survive under the high-salt, low-temperature, anaerobic conditions on Mars and present significant potential for forward contamination. Stringent planetary protection requirements are needed for future life-detection missions to Mars. Key Words: Analogue—Mars—Planetary protection—Salts—Life in extreme environments. Astrobiology 12, 98–106. PMID:22248384

  18. Eliminating aluminum toxicity in an acid sulfate soil for rice cultivation using plant growth promoting bacteria.

    PubMed

    Panhwar, Qurban Ali; Naher, Umme Aminun; Radziah, Othman; Shamshuddin, Jusop; Razi, Ismail Mohd

    2015-02-20

    Aluminum toxicity is widely considered as the most important limiting factor for plants growing in acid sulfate soils. A study was conducted in laboratory and in field to ameliorate Al toxicity using plant growth promoting bacteria (PGPB), ground magnesium limestone (GML) and ground basalt. Five-day-old rice seedlings were inoculated by Bacillus sp., Stenotrophomonas maltophila, Burkholderia thailandensis and Burkholderia seminalis and grown for 21 days in Hoagland solution (pH 4.0) at various Al concentrations (0, 50 and 100 μM). Toxicity symptoms in root and leaf were studied using scanning electron microscope. In the field, biofertilizer (PGPB), GML and basalt were applied (4 t·ha-1 each). Results showed that Al severely affected the growth of rice. At high concentrations, the root surface was ruptured, leading to cell collapse; however, no damages were observed in the PGPB inoculated seedlings. After 21 days of inoculation, solution pH increased to >6.0, while the control treatment remained same. Field study showed that the highest rice growth and yield were obtained in the bio-fertilizer and GML treatments. This study showed that Al toxicity was reduced by PGPB via production of organic acids that were able to chelate the Al and the production of polysaccharides that increased solution pH. The release of phytohormones further enhanced rice growth that resulted in yield increase.

  19. Harmful algal bloom removal and eutrophic water remediation by commercial nontoxic polyamine-co-polymeric ferric sulfate-modified soils.

    PubMed

    Dai, Guofei; Zhong, Jiayou; Song, Lirong; Guo, Chunjing; Gan, Nanqin; Wu, Zhenbin

    2015-07-01

    Harmful algal bloom has posed great threat to drinking water safety worldwide. In this study, soils were combined with commercial nontoxic polyamine poly(epichlorohydrin-dimethylamine) (PN) and polymeric ferric sulfate (PFS) to obtain PN-PFS soils for Microcystis removal and eutrophic water remediation under static laboratory conditions. High pH and temperature in water could enhance the function of PN-PFS soil. Algal removal efficiency increased as soil particle size decreased or modified soil dose increased. Other pollutants or chemicals (such as C, P, and organic matter) in eutrophic water could participate and promote algal removal by PN-PFS soil; these pollutants were also flocculated. During PN-PFS soil application in blooming field samples, the removal efficiency of blooming Microcystis cells exceeded 99 %, the cyanotoxin microcystins reduced by 57 %. Water parameters (as TP, TN, SS, and SPC) decreased by about 90 %. CODMn, PO4-P, and NH4-N also sharply decreased by >45 %. DO and ORP in water improved. Netting and bridging effects through electrostatic attraction and complexation reaction could be the two key mechanisms of Microcystis flocculation and pollutant purification. Considering the low cost of PN-PFS soil and its nontoxic effect on the environment, we proposed that this soil combination could be applied to remove cyanobacterial bloom and remediate eutrophic water in fields.

  20. Sulfation of afimoxifene, endoxifen, raloxifene, and fulvestrant by the human cytosolic sulfotransferases (SULTs): A systematic analysis.

    PubMed

    Hui, Ying; Luo, Lijun; Zhang, Lingtian; Kurogi, Katsuhisa; Zhou, Chunyang; Sakakibara, Yoichi; Suiko, Masahito; Liu, Ming-Cheh

    2015-07-01

    Previous studies demonstrated that sulfate conjugation is involved in the metabolism of three commonly used breast cancer drugs, tamoxifen, raloxifene and fulvestrant. The current study was designed to systematically identify the human cytosolic sulfotransferases (SULTs) that are capable of sulfating raloxifene, fulvestrant, and two active metabolites of tamoxifen, afimoxifene and endoxifen. A systematic analysis using 13 known human SULTs revealed SULT1A1 and SULT1C4 as the major SULTs responsible for the sulfation of afimoxifene, endoxifen, raloxifene and fulvestrant. Kinetic parameters of these two human SULTs in catalyzing the sulfation of these drug compounds were determined. Sulfation of afimoxifene, endoxifen, raloxifene and fulvestrant under metabolic conditions was examined using HepG2 human hepatoma cells and MCF-7 breast cancer cells. Moreover, human intestine, kidney, liver, and lung cytosols were examined to verify the presence of afimoxifene/endoxifen/raloxifene/fulvestrant-sulfating activity.

  1. Distribution of iron- and sulfate-reducing bacteria across a coastal acid sulfate soil (CASS) environment: implications for passive bioremediation by tidal inundation

    PubMed Central

    Ling, Yu-Chen; Bush, Richard; Grice, Kliti; Tulipani, Svenja; Berwick, Lyndon; Moreau, John W.

    2015-01-01

    Coastal acid sulfate soils (CASS) constitute a serious and global environmental problem. Oxidation of iron sulfide minerals exposed to air generates sulfuric acid with consequently negative impacts on coastal and estuarine ecosystems. Tidal inundation represents one current treatment strategy for CASS, with the aim of neutralizing acidity by triggering microbial iron- and sulfate-reduction and inducing the precipitation of iron-sulfides. Although well-known functional guilds of bacteria drive these processes, their distributions within CASS environments, as well as their relationships to tidal cycling and the availability of nutrients and electron acceptors, are poorly understood. These factors will determine the long-term efficacy of “passive” CASS remediation strategies. Here we studied microbial community structure and functional guild distribution in sediment cores obtained from 10 depths ranging from 0 to 20 cm in three sites located in the supra-, inter- and sub-tidal segments, respectively, of a CASS-affected salt marsh (East Trinity, Cairns, Australia). Whole community 16S rRNA gene diversity within each site was assessed by 454 pyrotag sequencing and bioinformatic analyses in the context of local hydrological, geochemical, and lithological factors. The results illustrate spatial overlap, or close association, of iron-, and sulfate-reducing bacteria (SRB) in an environment rich in organic matter and controlled by parameters such as acidity, redox potential, degree of water saturation, and mineralization. The observed spatial distribution implies the need for empirical understanding of the timing, relative to tidal cycling, of various terminal electron-accepting processes that control acid generation and biogeochemical iron and sulfur cycling. PMID:26191042

  2. Solid-solution partitioning and thionation of diphenylarsinic acid in a flooded soil under the impact of sulfate and iron reduction.

    PubMed

    Zhu, Meng; Tu, Chen; Hu, Xuefeng; Zhang, Haibo; Zhang, Lijuan; Wei, Jing; Li, Yuan; Luo, Yongming; Christie, Peter

    2016-11-01

    Diphenylarsinic acid (DPAA) is a major organic arsenic (As) compound derived from abandoned chemical weapons. The solid-solution partitioning and transformation of DPAA in flooded soils are poorly understood but are of great concern. The identification of the mechanisms responsible for the mobilization and transformation of DPAA may help to develop effective remediation strategies. Here, soil and Fe mineral incubation experiments were carried out to elucidate the partitioning and transformation of DPAA in anoxic (without addition of sulfate or sodium lactate) and sulfide (with the addition of sulfate and sodium lactate) soil and to examine the impact of sulfate and Fe(III) reduction on these processes. Results show that DPAA was more effectively mobilized and thionated in sulfide soil than in anoxic soil. At the initial incubation stages (0-4weeks), 6.7-74.5% of the total DPAA in sulfide soil was mobilized likely by sorption competition with sodium lactate. At later incubation stage (4-8weeks), DPAA was almost completely released into the solution likely due to the near-complete Fe(III) reduction. Scanning transmission X-ray microscopy (STXM) results provide further direct evidence of elevated DPAA release coupled with Fe(III) reduction in sulfide environments. The total DPAA fraction decreased significantly to 24.5% after two weeks and reached 3.4% after eight weeks in sulfide soil, whereas no obvious elimination of DPAA occurred in anoxic soil at the initial two weeks and the total DPAA fraction decreased to 10.9% after eight weeks. This can be explained in part by the enhanced mobilization of DPAA and sulfate reduction in sulfide soil compared with anoxic soil. These results suggest that under flooded soil conditions, Fe(III) and sulfate reduction significantly promote DPAA mobilization and thionation, respectively, and we suggest that it is essential to consider both sulfate and Fe(III) reduction to further our understanding of the environmental fate of DPAA.

  3. Macroalgal biomonitors of trace metal contamination in acid sulfate soil aquaculture ponds.

    PubMed

    Gosavi, K; Sammut, J; Gifford, S; Jankowski, J

    2004-05-25

    Earthen shrimp aquaculture ponds are often impacted by acid sulfate soils (ASS), typically resulting in increased disease and mortality of cultured organisms. Production losses have been attributed to either low pH or to elevated concentrations of toxic metals, both direct products of pyrite oxidation in ASS. The standard farm management practice to minimise effects of pyrite oxidation is to maintain pH of pond waters above 5, based on the assumption that dissolved metal bioavailability is negligible at this pH. This study aimed to test the validity of this assumption, and therefore elucidate a possible role of toxic heavy metals in observed decreases in farm productivity. Metal bioaccumulation in four genera of macroalgae, Ulva sp., Enteromorpha sp., Cladophora sp. and Chaetomorpha sp., sampled from ASS-affected shrimp aquaculture ponds were measured using inductively coupled plasma-optical emission spectroscopy (ICP-OES) to assess the relative bioavailability of dissolved metals within the system. Results showed that all four genera of macroalgae accumulated appreciable quantities of Fe, Al, Zn, Cd, Cu, As and Pb. Iron and Al, the most common metals mobilised from ASS, were both accumulated in all algal genera to concentrations three orders of magnitude greater than all other metals analysed. These findings indicate that dissolved heavy metals are indeed bioavailable within the aquaculture pond system. A literature search of heavy metal bioaccumulation by these algal genera revealed concentrations recorded in this study are comparable to highly contaminated environments, such as those exposed to urban, industrial and mining pollution. The results of this study indicate that dissolved metal bioavailability in many earthen shrimp aquaculture ponds may be higher than previously thought.

  4. Monitoring and assessment of surface water acidification following rewetting of oxidised acid sulfate soils.

    PubMed

    Mosley, Luke M; Zammit, Benjamin; Jolley, Ann-Marie; Barnett, Liz; Fitzpatrick, Rob

    2014-01-01

    Large-scale exposure of acid sulfate soils during a hydrological drought in the Lower Lakes of South Australia resulted in acidification of surface water in several locations. Our aim was to describe the techniques used to monitor, assess and manage these acidification events using a field and laboratory dataset (n = 1,208) of acidic to circum-neutral pH water samples. The median pH of the acidified (pH < 6.5) samples was 3.8. Significant (p < 0.05) increases in soluble metals (Al, Co, Mn, Ni and Zn above guidelines for ecosystem protection), SO4 (from pyrite oxidation), Si (from aluminosilicate dissolution) and Ca (from carbonate dissolution and limestone addition), were observed under the acidic conditions. The log of the soluble metal concentrations, acidity and SO4/Cl ratio increased linearly with pH. The pH, alkalinity and acidity measurements were used to inform aerial limestone dosing events to neutralise acidic water. Field measurements correlated strongly with laboratory measurements for pH, alkalinity and conductivity (r (2) ≥ 0.97) but only moderately with acidity (r (2) = 0.54), which could be due to difficulties in determining the indicator-based field titration endpoint. Laboratory measured acidity correlated well with calculated acidity (r (2) = 0.87, acidity present as Al(III) > H(+) ≈ Mn(II) > Fe(II/III)) but was about 20 % higher on average. Geochemical speciation calculations and XRD measurements indicated that solid phase minerals (schwertmannite and jarosite for Fe and jurbanite for Al) were likely controlling dissolved metal concentrations and influencing measured acidity between pH 2 and 5.

  5. Chemical analysis of simulated high level waste glasses to support stage III sulfate solubility modeling

    SciTech Connect

    Fox, K. M.

    2016-03-17

    The U.S. Department of Energy (DOE), Office of Environmental Management (EM) is sponsoring an international, collaborative project to develop a fundamental model for sulfate solubility in nuclear waste glass. The solubility of sulfate has a significant impact on the achievable waste loading for nuclear waste forms within the DOE complex. These wastes can contain relatively high concentrations of sulfate, which has low solubility in borosilicate glass. This is a significant issue for low-activity waste (LAW) glass and is projected to have a major impact on the Hanford Tank Waste Treatment and Immobilization Plant (WTP). Sulfate solubility has also been a limiting factor for recent high level waste (HLW) sludge processed at the Savannah River Site (SRS) Defense Waste Processing Facility (DWPF). The low solubility of sulfate in glass, along with melter and off-gas corrosion constraints, dictate that the waste be blended with lower sulfate concentration waste sources or washed to remove sulfate prior to vitrification. The development of enhanced borosilicate glass compositions with improved sulfate solubility will allow for higher waste loadings and accelerate mission completion.The objective of the current scope being pursued by SHU is to mature the sulfate solubility model to the point where it can be used to guide glass composition development for DWPF and WTP, allowing for enhanced waste loadings and waste throughput at these facilities. A series of targeted glass compositions was selected to resolve data gaps in the model and is identified as Stage III. SHU fabricated these glasses and sent samples to SRNL for chemical composition analysis. SHU will use the resulting data to enhance the sulfate solubility model and resolve any deficiencies. In this report, SRNL provides chemical analyses for the Stage III, simulated HLW glasses fabricated by SHU in support of the sulfate solubility model development.

  6. CHEMICAL ANALYSIS OF SIMULATED HIGH LEVEL WASTE GLASSES TO SUPPORT SULFATE SOLUBILITY MODELING

    SciTech Connect

    Fox, K.; Marra, J.

    2014-08-14

    The U.S. Department of Energy (DOE), Office of Environmental Management (EM) is sponsoring an international, collaborative project to develop a fundamental model for sulfate solubility in nuclear waste glass. The solubility of sulfate has a significant impact on the achievable waste loading for nuclear waste forms both within the DOE complex and to some extent at U.K. sites. The development of enhanced borosilicate glass compositions with improved sulfate solubility will allow for higher waste loadings and accelerated cleanup missions. Much of the previous work on improving sulfate retention in waste glasses has been done on an empirical basis, making it difficult to apply the findings to future waste compositions despite the large number of glass systems studied. A more fundamental, rather than empirical, model of sulfate solubility in glass, under development at Sheffield Hallam University (SHU), could provide a solution to the issues of sulfate solubility. The model uses the normalized cation field strength index as a function of glass composition to predict sulfate capacity, and has shown early success for some glass systems. The objective of the current scope is to mature the sulfate solubility model to the point where it can be used to guide glass composition development for DOE waste vitrification efforts, allowing for enhanced waste loadings and waste throughput. A series of targeted glass compositions was selected to resolve data gaps in the current model. SHU fabricated these glasses and sent samples to the Savannah River National Laboratory (SRNL) for chemical composition analysis. SHU will use the resulting data to enhance the sulfate solubility model and resolve any deficiencies. In this report, SRNL provides chemical analyses for simulated waste glasses fabricated SHU in support of sulfate solubility model development. A review of the measured compositions revealed that there are issues with the B{sub 2}O{sub 3} and Fe{sub 2}O{sub 3} concentrations

  7. Effects of multi-walled carbon nanotubes on mineralization and mobility of nonylphenol and sodium dodecyl sulfate in agricultural soils

    NASA Astrophysics Data System (ADS)

    Lillotte, Julia; Marschner, Bernd; Stumpe, Britta

    2014-05-01

    Nanotechnology is one of the major scientific research fields in this decade. One of the most wide-spread nanomaterials are carbon based nanoparticles (CNPs) which are increasingly be used in industry. Several studies shows that CNPs are interacting with other chemical compounds and organic pollutants in the environment. It is assumed that the interactions between CNPs and organic pollutants are affected by solution and aggregate behavior. Based on the knowledge of the behavior of CNPs and organic pollutants in aquatic systems the interactions of CNPs and organic pollutants in agricultural soils have to be studied. As organic pollutants two environmental substances, nonylphenol (NP) and sodium dodecyl sulfate (SDS) were selected as model substances. They occur frequently in aqueous systems and also show different solubility behavior. As CNP representatives, two different multi-walled carbon nanotubes (MWNT) were selected. They differed either in length or outer diameter. Conclusions therefrom are to be closed the influence of length and diameter of the sorption capacity of different organic pollutants. In addition, two agricultural soils (sandy and silty soil) and one forest soil (sandy soil) were chosen. Mineralization and sorption experiments were conducted to provide information about the degradation of organic pollutants in presence of multi-walled carbon nanotubes in soils. To analyze the CNPs mineralization potential, peroxidase activity was measured. Further extraction experiments were conducted to detect the extractable part of organic pollutants. The results show that the surface area of the MWNT has a significant impact on the sorption behav-ior of NP and SDS in soils. The sorption of NP and SDS is much higher than without MWNT. However, the properties of the organic pollutants (different water solubility and hydrophobicity) are equally important and should be noted. The degradation of both pollutants is influenced by MWNT. Due to the strong sorption of

  8. Surface chemistry, morphological analysis and properties of cellulose nanocrystals with gradiented sulfation degrees

    NASA Astrophysics Data System (ADS)

    Lin, Ning; Dufresne, Alain

    2014-04-01

    proposed on the basis of AFM observations. The effect of sulfate groups on crystal properties and thermal stability was discussed and validated, and the birefringence behavior of nanocrystal suspensions was observed. Electronic supplementary information (ESI) available: Fig. S1: size statistics for length (L) and width (W) from AFM images of cellulose nanocrystal samples (CN-0, CN-4 and CN-8); Fig. S2: size statistics for height (H) of cellulose nanocrystal samples (CN-0, CN-4 and CN-8) with the analysis using Nanoscope software. See DOI: 10.1039/c3nr06761k

  9. Acute toxicity and effects analysis of endosulfan sulfate to freshwater fish species.

    PubMed

    Carriger, John F; Hoang, Tham C; Rand, Gary M; Gardinali, Piero R; Castro, Joffre

    2011-02-01

    Endosulfan sulfate is a persistent environmental metabolite of endosulfan, an organochlorine insecticide-acaricide presently registered by the United States Environmental Protection Agency. There is, however, limited acute fish toxicity data for endosulfan sulfate. This study determines the acute toxicity (LC₅₀s and LC₁₀s) of endosulfan sulfate to three inland Florida native fish species (mosquitofish [Gambusia affinis]; least killifish [Heterandria formosa]; and sailfin mollies [Poecilia latipinna]) as well as fathead minnows (Pimephales promelas). Ninety-six-h acute toxicity tests were conducted with each fish species under flow-through conditions. For all of the above-mentioned fish species, 96-h LC₅₀ estimates ranged from 2.1 to 3.5 μg/L endosulfan sulfate. The 96-h LC₁₀ estimates ranged from 0.8 to 2.1 μg/L endosulfan sulfate. Of all of the fish tested, the least killifish appeared to be the most sensitive to endosulfan sulfate exposure. The above-mentioned data were combined with previous acute toxicity data for endosulfan sulfate and freshwater fish for an effects analysis. The effects analysis estimated hazardous concentrations expected to exceed 5, 10, and 50% of the fish species' acute LC₅₀ or LC₁₀ values (HC₅, HC₁₀, and HC₅₀). The endosulfan sulfate freshwater-fish acute tests were also compared with the available freshwater-fish acute toxicity data for technical endosulfan. Technical endosulfan is a mixture of α- and β-endosulfan. The LC₅₀s had a wider range for technical endosulfan, and their distribution produced a lower HC₁₀ than for endosulfan sulfate. The number of freshwater-fish LC₅₀s for endosulfan sulfate is much smaller than the number available for technical endosulfan, reflecting priorities in examining the toxicity of the parent compounds of pesticides. The toxicity test results and effects analyses provided acute effect values for endosulfan sulfate and freshwater fish that might be applied

  10. Molecular Analysis of the Metabolic Rates of Discrete Subsurface Populations of Sulfate Reducers▿

    PubMed Central

    Miletto, M.; Williams, K. H.; N'Guessan, A. L.; Lovley, D. R.

    2011-01-01

    Elucidating the in situ metabolic activity of phylogenetically diverse populations of sulfate-reducing microorganisms that populate anoxic sedimentary environments is key to understanding subsurface ecology. Previous pure culture studies have demonstrated that the transcript abundance of dissimilatory (bi)sulfite reductase genes is correlated with the sulfate-reducing activity of individual cells. To evaluate whether expression of these genes was diagnostic for subsurface communities, dissimilatory (bi)sulfite reductase gene transcript abundance in phylogenetically distinct sulfate-reducing populations was quantified during a field experiment in which acetate was added to uranium-contaminated groundwater. Analysis of dsrAB sequences prior to the addition of acetate indicated that Desulfobacteraceae, Desulfobulbaceae, and Syntrophaceae-related sulfate reducers were the most abundant. Quantifying dsrB transcripts of the individual populations suggested that Desulfobacteraceae initially had higher dsrB transcripts per cell than Desulfobulbaceae or Syntrophaceae populations and that the activity of Desulfobacteraceae increased further when the metabolism of dissimilatory metal reducers competing for the added acetate declined. In contrast, dsrB transcript abundance in Desulfobulbaceae and Syntrophaceae remained relatively constant, suggesting a lack of stimulation by added acetate. The indication of higher sulfate-reducing activity in the Desulfobacteraceae was consistent with the finding that Desulfobacteraceae became the predominant component of the sulfate-reducing community. Discontinuing acetate additions resulted in a decline in dsrB transcript abundance in the Desulfobacteraceae. These results suggest that monitoring transcripts of dissimilatory (bi)sulfite reductase genes in distinct populations of sulfate reducers can provide insight into the relative rates of metabolism of different components of the sulfate-reducing community and their ability to respond to

  11. Molecular analysis of the metabolic rates of discrete subsurface populations of sulfate reducers

    SciTech Connect

    Miletto, M.; Williams, K.H.; N'Guessan, A.L.; Lovley, D.R.

    2011-04-01

    Elucidating the in situ metabolic activity of phylogenetically diverse populations of sulfate-reducing microorganisms that populate anoxic sedimentary environments is key to understanding subsurface ecology. Previous pure culture studies have demonstrated that transcript abundance of dissimilatory (bi)sulfite reductase genes is correlated with the sulfate reducing activity of individual cells. To evaluate whether expression of these genes was diagnostic for subsurface communities, dissimilatory (bi)sulfite reductase gene transcript abundance in phylogenetically distinct sulfate-reducing populations was quantified during a field experiment in which acetate was added to uranium-contaminated groundwater. Analysis of dsrAB sequences prior to the addition of acetate indicated that Desulfobacteraceae, Desulfobulbaceae, and Syntrophaceae-related sulfate reducers were the most abundant. Quantifying dsrB transcripts of the individual populations suggested that Desulfobacteraceae initially had higher dsrB transcripts per cell than Desulfobulbaceae or Syntrophaceae populations, and that the activity of Desulfobacteraceae increased further when the metabolism of dissimilatory metal reducers competing for the added acetate declined. In contrast, dsrB transcript abundance in Desulfobulbaceae and Syntrophaceae remained relatively constant, suggesting a lack of stimulation by added acetate. The indication of higher sulfate-reducing activity in the Desulfobacteraceae was consistent with the finding that Desulfobacteraceae became the predominant component of the sulfate-reducing community. Discontinuing acetate additions resulted in a decline in dsrB transcript abundance in the Desulfobacteraceae. These results suggest that monitoring transcripts of dissimilatory (bi)sulfite reductase genes in distinct populations of sulfate reducers can provide insight into the relative rates of metabolism of different components of the sulfate-reducing community and their ability to respond to

  12. Understanding barite and gypsum precipitation in upland acid-sulfate soils: An example from a Lufkin Series toposequence, south-central Texas, USA

    NASA Astrophysics Data System (ADS)

    Jennings, Debra S.; Driese, Steven G.

    2014-01-01

    Although low-temperature barite precipitation has been previously documented in soils and paleosols, pedogenic barite precipitation remains poorly understood. This study characterizes the micromorphology, elemental trends, and stable isotope geochemistry of sulfates in a barite-bearing soil (Lufkin Series) toposequence using optical microscopy, XRD, ICP-MS, and stable S and O isotope data. Synthesized data indicate that fluctuating redox processes and microbial activity resulting from epiaquatic and evaporative conditions lead to the precipitation of sulfates in the Lufkin soils. Stable sulfur and oxygen isotopes indicate that the primary source of sulfur is the partial dissolution of jarosite during microbial sulfate reduction. Barium-rich parent material provides adequate barium for barite precipitation. Barium is mobilized and concentrated in Btg horizons ~ 100-160 cm below the surface. The presence of humic acids in profiles lower on the landscape prevents barite precipitation and drives the precipitation of gypsum between saturated, anoxic conditions (November to May) and drier, more oxic conditions (May to November). Barite precipitation is a slow, punctuated process. Micromorphological data reveal that barite precipitates first along evacuated macropores and then in the adjacent matrix. In general, optimal conditions for pedogenic barite precipitation in upland wetland acid-sulfate soils are: 1) warm soil temperature that supports active sulfur-reducing and sulfur oxidizing microbes; 2) distinct wet/dry seasons that allow alternating redox conditions; 3) low-gradient landscape; 4) parent material that contains barium- and sulfur-rich constituents; and 5) a long-lived, stable landscape.

  13. Glucosamine sulfate

    MedlinePlus

    ... Glucosamine Sulphate KCl, Glucosamine-6-Phosphate, GS, Mono-Sulfated Saccharide, Poly-(1->3)-N-Acetyl-2-Amino- ... Sulfate de Glucosamine, Sulfate de Glucosamine 2KCl, SG, Sulfated Monosaccharide, Sulfated Saccharide, Sulfato de Glucosamina. Glucosamine Hydrochloride ...

  14. REPRESENTATIVE SAMPLING AND ANALYSIS OF HETEROGENEOUS SOILS

    EPA Science Inventory

    Standard sampling and analysis methods for hazardous substances in contaminated soils currently are available and routinely employed. Standard methods inherently assume a homogeneous soil matrix and contaminant distribution; therefore only small sample quantities typically are p...

  15. Dynamic surface tension analysis of dodecyl sulfate association complexes.

    PubMed

    Quigley, W W; Nabi, A; Prazen, B J; Lenghor, N; Grudpan, K; Synovec, R E

    2001-09-13

    First, a novel calibration method is used to expand the current understanding of spherical drop growth and elongation that occurs during on-line measurements of surface pressure using the dynamic surface tension detector (DSTD). Using a novel surface tension calibration method, the drop radius is calculated as a function of time from experimental drop pressure data and compared to the theoretical drop radius calculated from volumetric flow rate. From this comparison, the drop volume at which the drop shape starts to deviate ( approximately 4 mul) from a spherical shape is readily observed and deviates more significantly by approximately 6 mul drop volume (5% deviation in the ideal spherical drop radius) for the capillary sensing tip employed in the DSTD. From this assessment of drop shape, an experimental method for precise drop detachment referred to as pneumatic drop detachment is employed at a drop volume of 2 mul (two second drops at 60 mul/min) in order to provide rapid dynamic surface tension measurements via the novel on-line calibration methodology. Second, the DSTD is used to observe and study kinetic information for surface-active molecules and association complexes adsorbing to an air-liquid drop interface. Dynamic surface tension measurements are made for sodium dodecyl sulfate (SDS) in the absence and presence of either tetra butyl ammonium (TBA) or chromium (III). Sensitive, indirect detection of chromium and other multiply charged metals at low concentrations is also investigated. The DSTD is utilized in examining the dynamic nature of SDS: cation association at the air-liquid interface of a growing drop. Either TBA or Cr(III) were found to substantially enhance the surface tension lowering of dodecyl sulfate (DS), but the surface tension lowering is accompanied by a considerable kinetic dependence. Essentially, the surface tension lowering of these DS: cation complexes is found to be a fairly slow process in the context of the two second DSTD

  16. Reactive trace element enrichment in a highly modified, tidally inundated acid sulfate soil wetland: East Trinity, Australia.

    PubMed

    Keene, Annabelle F; Johnston, Scott G; Bush, Richard T; Burton, Edward D; Sullivan, Leigh A

    2010-04-01

    This study examines the abundance of trace elements in surface sediments of a former acid sulfate soil (ASS) wetland subjected to marine tidal inundation. Sediment properties of this highly modified study site are compared with those of an adjacent unmodified, intertidal mangrove forest. Whilst some trace elements (Al, Cd, Mn, Ni and Zn) were clearly depleted due to mobilisation and leaching in the previous oxic-acidic phase, other trace elements (As and Cr) displayed significant enrichment in the tidally inundated ASS. Many trace elements were strongly associated with the reactive Fe and acid volatile sulfide (AVS) fractions, suggesting that trace elements may be adsorbed to abundant reactive Fe phases or sequestered as sulfide minerals. These findings provide an important understanding of the fate and mobility of reactive iron, AVS and trace elements during tidal remediation of a formerly acidified Great Barrier Reef (GBR) catchment.

  17. Bioinformatic Analysis of the Human Recombinant Iduronate 2-Sulfate Sulfatase

    PubMed Central

    Morales-Álvarez, Edwin D.; Rivera-Hoyos, Claudia M.; Landázuri, Patricia; Poutou-Piñales, Raúl A.; Pedroza-Rodríguez, Aura M.

    2016-01-01

    Mucopolysaccharidosis type II is a human recessive disease linked to the X chromosome caused by deficiency of lysosomal enzyme Iduronate 2-Sulfate Sulfatase (IDS), which leads to accumulation of glycosaminoglycans in tissues and organs. The human enzyme has been expressed in Escherichia coli and Pichia pastoris in attempt to develop more successful expression systems that allow the production of recombinant IDS for Enzyme Replacement Therapy (ERT). However, the preservation of native signal peptide in the sequence has caused conflicts in processing and recognition in the past, which led to problems in expression and enzyme activity. With the main object being the improvement of the expression system, we eliminate the native signal peptide of human recombinant IDS. The resulting sequence showed two modified codons, thus, our study aimed to analyze computationally the nucleotide sequence of the IDSnh without signal peptide in order to determine the 3D structure and other biochemical properties to compare them with the native human IDS (IDSnh). Results showed that there are no significant differences between both molecules in spite of the two-codon modifications detected in the recombinant DNA sequence. PMID:27335624

  18. Wavelet-based image analysis system for soil texture analysis

    NASA Astrophysics Data System (ADS)

    Sun, Yun; Long, Zhiling; Jang, Ping-Rey; Plodinec, M. John

    2003-05-01

    Soil texture is defined as the relative proportion of clay, silt and sand found in a given soil sample. It is an important physical property of soil that affects such phenomena as plant growth and agricultural fertility. Traditional methods used to determine soil texture are either time consuming (hydrometer), or subjective and experience-demanding (field tactile evaluation). Considering that textural patterns observed at soil surfaces are uniquely associated with soil textures, we propose an innovative approach to soil texture analysis, in which wavelet frames-based features representing texture contents of soil images are extracted and categorized by applying a maximum likelihood criterion. The soil texture analysis system has been tested successfully with an accuracy of 91% in classifying soil samples into one of three general categories of soil textures. In comparison with the common methods, this wavelet-based image analysis approach is convenient, efficient, fast, and objective.

  19. Soil Characterization Using CCSEM Analysis

    NASA Astrophysics Data System (ADS)

    Rogers, R.; Hunt, A.

    2014-12-01

    An investigation is underway to determine elemental compounds of African Soils. Soil samples were taken from four territories in the Sahel and Saharan region of Africa and analyzed using Computer Controlled Scanning Electron Microscopy (CCSEM). Optimized secondary electron detectors (SED) and back-scattered electron detectors (BSED) with adjustable quadrants was used with a light element Peltier-cooled energy dispersive x-ray spectrometer. A variable pressure system was used for the analysis of insulating materials, which eliminated the need for special specimen coating to dissipate charge and remove artifacts. Data from these samples are being used to address two primary questions: (1) Can CCSEM technology accurately describe elemental compounds derived from soil samples, and (2) is there a correlation between particle chemistry and size? The creation of a 29-point elemental classification system was used to separate and analyze each of the data points. Findings show large amounts of Fe, Si, and Al-rich minerals in all samples, but vary in percentages by amounts large enough to distinguish between sample regions. Other elemental constituents within the samples include varying amounts of Na, S, Ti, Ca, and K. An initial run of samples show a similarity in chemical composition, leading to the hypothesis that Aeolian processes are contributing to the mineral content of surface dusts, but are still distinguishable from region to region. Further research on the effects of these wind driven dusts is needed to assess the potential problematic deposited in the Atlantic Ocean, which can cause overpressures within the sediments on slopes.

  20. Sulfate reduction in sulfuric material after re-flooding: Effectiveness of organic carbon addition and pH increase depends on soil properties.

    PubMed

    Yuan, Chaolei; Fitzpatrick, Rob; Mosley, Luke M; Marschner, Petra

    2015-11-15

    Sulfuric material is formed upon oxidation of sulfidic material; it is extremely acidic, and therefore, an environmental hazard. One option for increasing pH of sulfuric material may be stimulation of bacterial sulfate reduction. We investigated the effects of organic carbon addition and pH increase on sulfate reduction after re-flooding in ten sulfuric materials with four treatments: control, pH increase to 5.5 (+pH), organic carbon addition with 2% w/w finely ground wheat straw (+C), and organic carbon addition and pH increase (+C+pH). After 36 weeks, in five of the ten soils, only treatment +C+pH significantly increased the concentration of reduced inorganic sulfur (RIS) compared to the control and increased the soil pore water pH compared to treatment+pH. In four other soils, pH increase or/and organic carbon addition had no significant effect on RIS concentration compared to the control. The RIS concentration in treatment +C+pH as percentage of the control was negatively correlated with soil clay content and initial nitrate concentration. The results suggest that organic carbon addition and pH increase can stimulate sulfate reduction after re-flooding, but the effectiveness of this treatment depends on soil properties.

  1. Following the enzymatic digestion of chondroitin sulfate by a simple GPC analysis.

    PubMed

    Silva, Carla; Novoa-Carballal, Ramon; Reis, Rui L; Pashkuleva, Iva

    2015-07-23

    We describe the use of gel permeation chromatography (GPC) setup with four size exclusion columns for analysis of enzymatically digested glycosaminoglycans (GAGs). This setup provides information about the molecular weight (Mw) and concentration of all species (low and high Mw) present in the digests in a single measurement. The data about the fraction with high Mw (often omitted in the analysis of GAG digests) provide direct evidence about the mechanisms of action of the enzymes. We proved the feasibility of this methodology by applying it to chondroitin sulfate (CS) substrates with different molecular weight and sulfation pattern and using different enzymes (hyaluronidase and chondroitinase). NMR analysis of the obtained digests fractionated by ultrafiltration confirmed the results obtained by GPC setup and reveal further details about the degradation mechanisms: (i) both enzymes preferentially attack 4-sulfated chondroitin and (ii) additionally to the well documented endolytic activity of hyaluronidase we also observed a low lyase activity for this enzyme reflected in the detected minor exolytic breakage. Finally, we demonstrate that CS with medium molecular weight (12-60kDa) which is sulfated mainly at 6-position can be obtained in good yields by enzymatic digestion and following ultrafiltration.

  2. Facile analysis of contents and compositions of the chondroitin sulfate/dermatan sulfate hybrid chain in shark and ray tissues.

    PubMed

    Takeda, Naoko; Horai, Sawako; Tamura, Jun-ichi

    2016-04-07

    The chondroitin sulfate (CS)/dermatan sulfate (DS) hybrid chain was extracted from specific tissues of several kinds of sharks and rays. The contents and sulfation patterns of the CS/DS hybrid chain were precisely analyzed by digestion with chondroitinases ABC and AC. All samples predominantly contained the A- and C-units. Furthermore, all samples characteristically contained the D-unit. Species-specific differences were observed in the contents of the CS/DS hybrid chain, which were the highest in Mako and Blue sharks and Sharpspine skates, but were lower in Hammerhead sharks. Marked differences were observed in the ratio of the C-unit/A-unit between sharks and rays. The contents of the CS/DS hybrid chain and the ratio of the C-unit/A-unit may be related to an oxidative stress-decreasing ability.

  3. Donnan membrane speciation of Al, Fe, trace metals and REEs in coastal lowland acid sulfate soil-impacted drainage waters.

    PubMed

    Jones, Adele M; Xue, Youjia; Kinsela, Andrew S; Wilcken, Klaus M; Collins, Richard N

    2016-03-15

    Donnan dialysis has been applied to forty filtered drainage waters collected from five coastal lowland acid sulfate soil (CLASS) catchments across north-eastern NSW, Australia. Despite having average pH values<3.9, 78 and 58% of Al and total Fe, respectively, were present as neutral or negatively-charged species. Complementary isotope dilution experiments with (55)Fe and (26)Al demonstrated that only soluble (i.e. no colloidal) species were present. Trivalent rare earth elements (REEs) were also mainly present (>70%) as negatively-charged complexes. In contrast, the speciation of the divalent trace metals Co, Mn, Ni and Zn was dominated by positively-charged complexes and was strongly correlated with the alkaline earth metals Ca and Mg. Thermodynamic equilibrium speciation calculations indicated that natural organic matter (NOM) complexes dominated Fe(III) speciation in agreement with that obtained by Donnan dialysis. In the case of Fe(II), however, the free cation was predicted to dominate under thermodynamic equilibrium, whilst our results indicated that Fe(II) was mainly present as neutral or negatively-charged complexes (most likely with sulfate). For all other divalent metals thermodynamic equilibrium speciation calculations agreed well with the Donnan dialysis results. The proportion of Al and REEs predicted to be negatively-charged was also grossly underestimated, relative to the experimental results, highlighting possible inaccuracies in the stability constants developed for these trivalent Me(SO4)2(-) and/or Me-NOM complexes and difficulties in modeling complex environmental samples. These results will help improve metal mobility and toxicity models developed for CLASS-affected environments, and also demonstrate that Australian CLASS environments can discharge REEs at concentrations an order of magnitude greater than previously reported.

  4. Acid sulfate alteration of fluorapatite, basaltic glass and olivine by hydrothermal vapors and fluids: Implications for fumarolic activity and secondary phosphate phases in sulfate-rich Paso Robles soil at Gusev Crater, Mars

    NASA Astrophysics Data System (ADS)

    Hausrath, E. M.; Golden, D. C.; Morris, R. V.; Agresti, D. G.; Ming, D. W.

    2013-01-01

    Phosphate-rich rocks and a nearby phosphate-rich soil, Paso Robles, were analyzed in Gusev Crater, Mars, by the Mars Exploration Rover Spirit and interpreted to be highly altered, possibly by hydrothermal or fumarolic alteration of primary, phosphate-rich material. To test mineral phases resulting from such alteration, we performed hydrothermal acid-vapor and acid-fluid experiments on olivine (Ol), fluorapatite (Ap), and basaltic glass (Gl) as single phases and a mixture of phases. Minerals formed include Ca-, Al-, Fe- and Mg-sulfates with different hydration states (anhydrite, bassanite, gypsum; alunogen; hexahydrite, and pentahydrite). Phosphate-bearing minerals formed included monocalcium phosphate monohydrate (MCP) (acid-vapor and acid-fluid alteration of fluorapatite only) and ferrian giniite (acid-fluid alteration of the Ol + Gl + Ap mixture). MCP is likely present in Paso Robles if primary Ca-phosphate minerals reacted with sulfuric acid with little transport of phosphate. Under fluid:rock ratios allowing transport of phosphate, a ferric phosphate phase such as ferrian giniite might form instead. Mössbauer measurements of ferrian giniite-bearing alteration products and synthetic ferrian giniite are consistent with Spirit's Mössbauer measurements of the ferric-bearing phase in Paso Robes soil, but are also consistent with ferric sulfate phases in the low-P soil Arad_Samra. Therefore, Mössbauer data alone do not constrain the fluid:rock ratio. However, the excess iron (hematite) in Paso Robles soil, which implies aqueous transport, combined with our laboratory experiments, suggest acid-sulfate alteration in a hydrothermal (fumarolic) environment at fluid:rock ratios sufficient to allow dissolution, transport, and precipitation of secondary chemical components including a ferric phosphate such as ferrian giniite.

  5. Arsenic mobility during flooding of contaminated soil: the effect of microbial sulfate reduction.

    PubMed

    Burton, Edward D; Johnston, Scott G; Kocar, Benjamin D

    2014-12-02

    In floodplain soils, As may be released during flooding-induced soil anoxia, with the degree of mobilization being affected by microbial redox processes such as the reduction of As(V), Fe(III), and SO4(2-). Microbial SO4(2-) reduction may affect both Fe and As cycling, but the processes involved and their ultimate consequences on As mobility are not well understood. Here, we examine the effect of microbial SO4(2) reduction on solution dynamics and solid-phase speciation of As during flooding of an As-contaminated soil. In the absence of significant levels of microbial SO4(2-) reduction, flooding caused increased Fe(II) and As(III) concentrations over a 10 week period, which is consistent with microbial Fe(III)- and As(V)-reduction. Microbial SO4(2-) reduction leads to lower concentrations of porewater Fe(II) as a result of FeS formation. Scanning electron microscopy with energy dispersive X-ray fluorescence spectroscopy revealed that the newly formed FeS sequestered substantial amounts of As. Bulk and microfocused As K-edge X-ray absorption near-edge structure spectroscopy confirmed that As(V) was reduced to As(III) and showed that in the presence of FeS, solid-phase As was retained partly via the formation of an As2S3-like species. High resolution transmission electron microscopy suggested that this was due to As retention as an As2S3-like complex associated with mackinawite (tetragonal FeS) rather than as a discrete As2S3 phase. This study shows that mackinawite formation in contaminated floodplain soil can help mitigate the extent of arsenic mobilization during prolonged flooding.

  6. A Rapid Soils Analysis Kit

    DTIC Science & Technology

    2008-03-01

    for lateritic soils, whose plasticity character changes dramatically with oven drying. At present, there is no protocol to address this type of soil...Gather and incorporate moisture-density data on marginal soils such as corals and laterites and plastic silts (MH) to improve the usefulness of

  7. Trace metal biogeochemistry in mangrove ecosystems: a comparative assessment of acidified (by acid sulfate soils) and non-acidified sites.

    PubMed

    Nath, Bibhash; Birch, Gavin; Chaudhuri, Punarbasu

    2013-10-01

    The generation of acidity and subsequent mobilization of toxic metals induced by acid sulfate soils (ASSs) are known to cause severe environmental damage to many coastal wetlands and estuaries of Australia and worldwide. Mangrove ecosystems serve to protect coastal environments, but are increasingly threatened from such ASS-induced acidification due to variable hydrological conditions (i.e., inundation-desiccation cycles). However, the impact of such behaviors on trace metal distribution, bio-availability and accumulation in mangrove tissues, i.e., leaves and pneumatophores, are largely unknown. In this study, we examined how ASS-induced acidifications controlled trace metal distribution and bio-availability in gray mangrove (Avicennia marina) soils and in tissues in the Kooragang wetland, New South Wales, Australia. We collected mangrove soils, leaves and pneumatophores from a part of the wetland acidified from ASS (i.e., an affected site) for detailed biogeochemical studies. The results were compared with samples collected from a natural intertidal mangrove forest (i.e., a control site) located within the same wetland. Soil pH (mean: 5.90) indicated acidic conditions in the affected site, whereas pH was near-neutral (mean: 7.17) in the control site. The results did not show statistically significant differences in near-total and bio-available metal concentrations, except for Fe and Mn, between affected and control sites. Iron concentrations were significantly (p values≤0.001) greater in the affected site, whereas Mn concentrations were significantly (p values≤0.001) greater in the control site. However, large proportions of near-total metals were potentially bio-available in control sites. Concentrations of Fe and Ni were significantly (p values≤0.001) greater in leaves and pneumatophores of the affected sites, whereas Mn, Cu, Pb and Zn were greater in control sites. The degree of metal bio-accumulation in leaves and pneumatophores suggest contrasting

  8. Sulfur Mass Balances of Forested Catchments: Improving Predictions of Stream Sulfate Concentrations Through Better Representation of Soil Storage and Release

    NASA Astrophysics Data System (ADS)

    Scanlon, T. M.; Rice, K. C.; Riscassi, A.; Cosby, B. J., Jr.

    2015-12-01

    Sulfur dioxide (SO2) emissions in the eastern United States have declined by more than 80% since 1970, when the Clean Air Act first established limits on emissions from stationary and mobile sources. In many areas throughout the northeastern U.S., the resulting declines in sulfate (SO42-) deposition have been accompanied by declines in stream SO42- concentrations. In the southeastern U.S., however, declines in stream SO42- concentrations have not been observed on a widespread basis. In fact, SO42- concentrations continue to increase in many southeastern streams despite decades of declining deposition. This difference in behavior between northeastern and southeastern streams, owing to the distinct geological histories of their catchment soils, was anticipated by the Direct/Delayed Response Project initiated by the U.S. EPA during the early 1980s. At that time, understanding of how catchments store and release SO42- was mostly grounded in theory. Now, with the accumulation of long-term stream chemistry and hydrological datasets in forested catchments, we may develop an empirical basis for characterizing catchment storage and release of SO42-. In particular, are whole-catchment isotherms that described the partitioning between adsorbed and dissolved SO42- (1) linear or non-linear and (2) reversible or irreversible? How do these isotherms vary on a geographical basis? We apply mass balance combined with a simple theoretical framework to infer whole-catchment SO42- isotherms in Virginia and New England. Knowledge of this key soil geochemical property is needed to improve predictions of how catchments will store and export SO42- under changing levels of atmospheric deposition.

  9. Isotopically exchangeable concentrations of elements having multiple oxidation states: the case of Fe(II)/Fe(III) isotope self-exchange in coastal lowland acid sulfate soils.

    PubMed

    Collins, Richard N; Waite, T David

    2009-07-15

    Isotope exchange techniques have been used to probe isotopically exchangeable concentrations of Fe (E value) that are in dynamic equilibrium between the aqueous- and solid-phase of coastal lowland acid sulfate soils. Isotope self-exchange between Fe(II) and Fe(III) was rapid and complete in <1 min (p < 0.05) indicating that this reaction was initially occurring solely in the aqueous-phase and the surface of the soil solid-phase. It is further demonstrated that accurate and valid measurements of isotopically exchangeable concentrations of Fe do not require corrections for Fe speciation. This also holds for any element existing in two or more oxidation states which are completely isotopically self-exchangeable in soils. As isotope self-exchange between Fe(II) and Fe(III) is rapid, the distribution coefficient (Kd) and E value determined via this methodology are, therefore, truly representative of Fe regardless of the relative importance of Fe(II) or Fe(III) to the isotopically exchangeable pool of Fe. In the 21 soil samples examined, isotopically exchangeable concentrations of Fe varied from 90 mg/kg to values as high as 3610 mg/kg in acidic, saturated samples collected below the groundwater table from the transition soil horizon. The combination of low Evalues and extremely high Kd values in the upper oxidized layers of these soils indicate that these soil horizons are a relatively insignificant source of transportable (labile) Fe. As such, given our knowledge on the general rates of microbial Fe(III) reduction in, and the hydraulic properties of, the coastal lowland acid sulfate soils of this region, only those soils adjacent to agricultural drains are likely to contribute to the load of Fe entering surrounding aquatic systems.

  10. Mapping of Acid Sulfate Soils in Finland: determining of areas of risks and compiling guidelines for environmental protection and safe land use

    NASA Astrophysics Data System (ADS)

    Kupila, Juho

    2013-04-01

    Acid sulfate soils (ASS), also referred to as the "nastiest soils in the world", are soils that contain or have contained metal sulfides that oxidize under aerobic conditions and, subsequently, typically produce very severe acidity and metal pollution. In Finland, for example, the discharge of several metals to water courses from ASS is greater than that from the entire Finnish industry, and due to the acidity these metals largely occur in a soluble toxic form. In Europe, the largest occurrences of acid sulfate soils are located in Finland. It has been estimated that coverage of these harmful soils is approximately 1000 - 1500 km2 along the coastal areas of Finland. Sulfide-bearing fine-grained sediments were deposited in the sea between Finland and Sweden after the melting of the latest continental ice sheet, about 10,000 years ago. In places, the formation of such sediments is still going on today. The rapid isostatic land uplift (more than 200 m after the latest glacial period, currently up to 8 mm/year) after the retreat of the continental ice sheet has lifted these sediments above sea level. In Finland, systematic mapping and classification of acid sulfate soils started in 2009 with Geological Survey of Finland (GTK) as the leading partner, together with Åbo Akademi University and University of Helsinki. The definition of a risk classification of Finnish acid sulfate soils has been developed during the project. The observations, measurements and analyses have been used to produce e.g. probability maps of integrated catchment areas (at the scale 1:250 000), reports of the areas and guides for the identification of ASS and their environments. The main users of the results have been authorities at governmental, regional and local levels, organizations and actors in agriculture and forestry, peat production and earthwork companies and consultants concerned with soil and construction. The mapping project carried out by GTK is still in process and should be

  11. Deciphering the Role of Tyrosine Sulfation in Xanthomonas oryzae pv. oryzae Using Shotgun Proteomic Analysis

    PubMed Central

    Park, Hye-Jee; Park, Chang-Jin; Bae, Nahee; Han, Sang-Wook

    2016-01-01

    A bacterial tyrosine sulfotransferase, RaxST, is required for activation of rice XA21-mediated immunity, and it catalyzes sulfation of tyrosine residues of Omp1X and RaxX in Xanthomonas oryzae pv. oryzae, a causal agent of bacterial blight in rice. Although RaxST is biochemically well-characterized, biological functions of tyrosine sulfation have not been fully elucidated. We compared protein expression patterns between the wildtype and a raxST knockout mutant using shotgun proteomic analysis. Forty nine proteins displayed a more than 1.5-fold difference in their expression between the wildtype and the mutant strains. Clusters of orthologous groups analysis revealed that proteins involved in cell motility were most abundant, and phenotypic observation also showed that the twitching motility of the mutant was dramatically changed. These results indicate that tyrosine sulfation by RaxST is essential for Xoo movement, and they provide new insights into the biological roles of RaxST in cellular processes. PMID:27298602

  12. Results of mineral, chemical, and sulfate isotopic analyses of water, soil, rocks, and soil extracts from the Pariette Draw Watershed, Uinta Basin, Utah

    USGS Publications Warehouse

    Morrison, Jean M.; Tuttle, Michele L.W.; Fahy, Juli W.

    2015-08-06

    The goal of this study was to establish a process-based understanding of salt, Se, and B behavior to address whether these contaminants can be better managed, or if uncontrollable natural processes will overwhelm any attempts to bring Pariette Draw into compliance with respect to recently established total maximum daily limits (TMDLs). We collected data to refine our knowledge about the role of rock weathering and soil formation in the transport and storage of salt in the watershed and to show how salt is cycled under irrigated and natural conditions. Our approach was to sample rock, soils, and sediment on irrigated and natural terrain for mineralogical analysis to determine the residence of salt and associated Se and B, classify minerals as primary (related to rock formation) or secondary weathering products, and characterize mineral dissolution kinetics. Mineral and chemical analyses and selective extractions of rocks and soils provide useful information in understanding solute movement and mineral dissolution/ formation. The resulting data are critical in determining residence of salt, Se, and B in weathered rock and soil and understanding the mobility during water-rock-soil interactions. This report summarizes our methods for sample and data collection and tabulates the mineral, chemical, and isotopic data collected.

  13. Chondroitin sulfate

    MedlinePlus

    ... in combination with glucosamine sulfate, shark cartilage, and camphor. Some people also inject chondroitin sulfate into the ... in combination with glucosamine sulfate, shark cartilage, and camphor seems to reduce arthritis symptoms. However, any symptom ...

  14. Numerical analysis of soil-structure interaction

    NASA Astrophysics Data System (ADS)

    Vanlangen, Harry

    1991-05-01

    A study to improve some existing procedures for the finite element analysis of soil deformation and collapse is presented. Special attention is paid to problems of soil structure interaction. Emphasis is put on the behavior of soil rather than on that of structures. This seems to be justifiable if static interaction of stiff structures and soft soil is considered. In such a case nonlinear response will exclusively stem from soil deformation. In addition, the quality of the results depends to a high extent on the proper modeling of soil flow along structures and not on the modeling of the structure itself. An exception is made when geotextile reinforcement is considered. In that case the structural element, i.e., the geotextile, is highly flexible. The equation of continuum equilibrium, which serves as a starting point for the finite element formulation of large deformation elastoplasticity, is discussed with special attention being paid to the interpretation of some objective stress rate tensors. The solution of nonlinear finite element equations is addressed. Soil deformation in the prefailure range is discussed. Large deformation effect in the analysis of soil deformation is touched on.

  15. The CheMin Mineralogy Instrument on Mars Science Laboratory: Analysis of Clays and Sulfates at Gale Crater

    NASA Astrophysics Data System (ADS)

    Blake, D. F.; CheMin Science Team

    2011-12-01

    A principal goal of the Mars Science Laboratory (MSL) Curiosity rover is to identify and characterize present or past habitable environments on Mars. Mineralogy is important in this regard because minerals are thermodynamic phases, stable under specific (and known) conditions of temperature, pressure and composition. By determining the mineralogical composition of a rock or soil, one can often deduce the conditions under which it formed or its subsequent diagenetic or metamorphic history. The CheMin instrument on MSL will return accurate mineral determinations and quantitative mineralogical information from scooped soil samples and drilled rock powders collected at Gale crater during Curiosity's 1-Mars-year nominal mission. Individual analyses will require several hours over one or more Mars sols. For typical well-ordered minerals, CheMin will have a Minimum Detection Limit (MDL) of <3% by mass, an accuracy of better than 15% and a precision of better than 10% of the amount present for phases present in concentrations >4X MDL (12%). The resolution of the diffraction patterns is 0.3° 2θ. This performance is sufficient to allow for the detection and quantification of virtually all minerals. Orbital imagery and analysis of reflectance spectra from Gale Crater reveal a wealth of mineralogical and morphological features suggestive of ancient habitable environments and water. CheMin is quite capable of discriminating and quantifying the clay and sulfate mineralogies expected within the landing ellipse and in the strata of the central mound, the primary target at Gale. Both polyhydrated and monohydrated (kieserite) sulfate minerals are distributed in mappable strata at Gale. Virtually all hydrated and nonhydrated sulfates are uniquely identifiable and quantifiable with CheMin. Breadboard and commercial equivalents of the CheMin instrument have already been used extensively in evaporite field localities ranging from Death Valley to Antarctica and Spitsbergen; at all

  16. Analysis of Furaneol in tomato using dynamic headspace sampling with sodium sulfate.

    PubMed

    Buttery, R G; Takeoka, G R; Naim, M; Rabinowitch, H; Nam, Y

    2001-09-01

    High-flow dynamic headspace sampling with excess anhydrous sodium sulfate was found to be an effective method of isolating Furaneol from fresh tomatoes. Quantitative analysis was carried out by gas chromatography using maltol as internal standard. Furaneol was found in the highest concentrations (660-1100 ppb) in the summer crop of home-grown tomatoes and in some of the greenhouse hydroponically grown tomatoes, which are ripened on the plant before being transported to the supermarkets. Furaneol was found in the lowest concentrations (38-180 ppb) in the common ethylene-ripened, field-grown, supermarket tomatoes.

  17. Calibrating Nonlinear Soil Material Properties for Seismic Analysis Using Soil Material Properties Intended for Linear Analysis

    SciTech Connect

    Spears, Robert Edward; Coleman, Justin Leigh

    2015-08-01

    Seismic analysis of nuclear structures is routinely performed using guidance provided in “Seismic Analysis of Safety-Related Nuclear Structures and Commentary (ASCE 4, 1998).” This document, which is currently under revision, provides detailed guidance on linear seismic soil-structure-interaction (SSI) analysis of nuclear structures. To accommodate the linear analysis, soil material properties are typically developed as shear modulus and damping ratio versus cyclic shear strain amplitude. A new Appendix in ASCE 4-2014 (draft) is being added to provide guidance for nonlinear time domain SSI analysis. To accommodate the nonlinear analysis, a more appropriate form of the soil material properties includes shear stress and energy absorbed per cycle versus shear strain. Ideally, nonlinear soil model material properties would be established with soil testing appropriate for the nonlinear constitutive model being used. However, much of the soil testing done for SSI analysis is performed for use with linear analysis techniques. Consequently, a method is described in this paper that uses soil test data intended for linear analysis to develop nonlinear soil material properties. To produce nonlinear material properties that are equivalent to the linear material properties, the linear and nonlinear model hysteresis loops are considered. For equivalent material properties, the shear stress at peak shear strain and energy absorbed per cycle should match when comparing the linear and nonlinear model hysteresis loops. Consequently, nonlinear material properties are selected based on these criteria.

  18. Reflectance spectroscopy for soil analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Over the last three decades or more, researchers have estimated soil properties using visible and near infrared (VNIR) diffuse reflectance spectroscopy (DRS), with varying results. This presentation reviews the history and state-of –the art of VNIR-DRS, including relative estimation accuracy for var...

  19. Temperature-dependent analysis of thermal motion, disorder and structures of tris(ethylenediamine)zinc(II) sulfate and tris(ethylenediamine)copper(II) sulfate.

    PubMed

    Smeets, Stef; Parois, Pascal; Bürgi, Hans-Beat; Lutz, Martin

    2011-02-01

    The crystal structures of the title compounds have been determined in the temperature range 140-290 K for the zinc complex, and 190-270 K for the copper complex. The two structures are isostructural in the trigonal space group P31c with the sulfate anion severely disordered on a site with 32 (D(3)) symmetry. This sulfate disorder leads to a disordered three-dimensional hydrogen-bond network, with the N-H atoms acting as donors and the sulfate O atoms as acceptors. The displacement parameters of the N and C atoms in both compounds contain disorder contributions in the out-of-ligand plane direction owing to ring puckering and/or disorder in hydrogen bonding. In the Zn compound the vibrational amplitudes in the bond directions are closely similar. Their differences show no significant deviations from rigid-bond behaviour. In the Cu compound, a (presumably) dynamic Jahn-Teller effect is identified from a temperature-independent contribution to the displacement ellipsoids of the N atom along the N-Cu bond. These conclusions derive from analyses of the atomic displacement parameters with the Hirshfeld test, with rigid-body models at different temperatures, and with a normal coordinate analysis. This analysis considers the atomic displacement parameters (ADPs) from all different temperatures simultaneously and provides a detailed description of both the thermal motion and the disorder in the cation. The Jahn-Teller radii of the Cu compound derived on the basis of the ADP analysis and from the bond distances in the statically distorted low-temperature phase [Lutz (2010). Acta Cryst. C66, m330-m335] are found to be the same.

  20. Analysis of anabolic androgenic steroids as sulfate conjugates using high performance liquid chromatography coupled to tandem mass spectrometry.

    PubMed

    Rzeppa, S; Heinrich, G; Hemmersbach, P

    2015-01-01

    Improvements in doping analysis can be effected by speeding up analysis time and extending the detection time. Therefore, direct detection of phase II conjugates of doping agents, especially anabolic androgenic steroids (AAS), is proposed. Besides direct detection of conjugates with glucuronic acid, the analysis of sulfate conjugates, which are usually not part of the routine doping control analysis, can be of high interest. Sulfate conjugates of methandienone and methyltestosterone metabolites have already been identified as long-term metabolites. This study presents the synthesis of sulfate conjugates of six commonly used AAS and their metabolites: trenbolone, nandrolone, boldenone, methenolone, mesterolone, and drostanolone. In the following these sulfate conjugates were used for development of a fast and easy analysis method based on sample preparation using solid phase extraction with a mixed-mode sorbent and detection by high performance liquid chromatography coupled to tandem mass spectrometry (HPLC-MS/MS). Validation demonstrated the suitability of the method with regard to the criteria given by the technical documents of the World Anti-Doping Agency (WADA). In addition, suitability has been proven by successful detection of the synthesized sulfate conjugates in excretion urines and routine doping control samples.

  1. SEM-EDS analysis and discrimination of forensic soil.

    PubMed

    Cengiz, Salih; Cengiz Karaca, Ali; Cakir, Ismail; Bülent Uner, H; Sevindik, Aytekin

    2004-04-20

    Soils vary among different areas, and have some characteristics because of the natural effects and transfers made by human and other living beings in time. So that forensic examination of soil is not only concerned with the analysis of naturally occurring rocks, minerals, vegetation, and animal matter. It also includes the detection of such manufactured materials such as ions from synthetic fertilizers and from different environments (e.g., nitrate, phosphate, and sulfate) as environmental artifacts (e.g., lead or objects as glass, paint chips, asphalt, brick fragments, and cinders) whose presence may impart soil with characteristics that will make it unique to a particular location. Many screening and analytical methods have been applied for determining the characteristics which differentiate and discriminate the forensic soil samples but none of them easily standardized. Some of the methods that applied in forensic laboratories in forensic soil discrimination are the color comparison of the normal air-dried (dehumidified) and overheated soil samples, macroscopic observation, and low-power stereo-microscopic observation, determination of anionic composition by capillary electrophoresis (CE), and the elemental composition by scanning electron microscope (SEM)-energy dispersive X-ray spectrometer (EDS) and other high sensitivity techniques. The objective of this study was to show the effect of the application of 9 tonnes/cm2 pressure on the elemental compositions obtained by SEM-EDS technique and comparing the discrimination power of the pressed-homogenized and not homogenized forensic soil samples. For this purpose soil samples from 17 different locations of Istanbul were collected. Aliquots of the well mixed samples were dried in an oven at 110-120 degrees C and sieved by using 0.5 mm sieve and then the undersieve fraction(<0.5 mm) of these samples put on an adhesive tape placed on a stub. About 100-150 mg aliquots of dried, sieved samples were pressed under 9

  2. Complexity Analysis of Peat Soil Density Distribution

    NASA Astrophysics Data System (ADS)

    Sampurno, Joko; Diah Faryuni, Irfana; Dzar Eljabbar Latief, Fourier; Srigutomo, Wahyu

    2016-08-01

    The distributions of peat soil density have been identified using fractal analysis method. The study was conducted on 5 peat soil samples taken from a ground field in Pontianak, West Kalimantan, at the coordinates (0 ° 4 '2:27 "S, 109 ° 18' 48.59" E). In this study, we used micro computerized tomography (pCT Scanner) at 9.41 micro meter per pixel resolution under peat soil samples to provide 2-D high-resolution images L1-L5 (200 200 pixels) that were used to detect the distribution of peat soil density. The method for determining the fractal dimension and intercept was the 2-D Fourier analysis method. The method was used to obtain the log log-plot of magnitude with frequency. Fractal dimension was obtained from the straight regression line that interpolated the points in the interval with the largest coefficient determination. Intercept defined by the point of intersection on the -axis. The conclusion was that the distributions of peat soil density showing the fractal behaviour with the heterogeneity of the samples from the highest to the lowest were L5, L1, L4, L3 and L2. Meanwhile, the range of density values of the samples from the highest to the lowest was L3, L2, L4, L5 and L1. The study also concluded that the behaviour of the distribution of peat soil density was a weakly anisotropic.

  3. Assessment of soil quality parameters using multivariate analysis in the Rawal Lake watershed.

    PubMed

    Firdous, Shahana; Begum, Shaheen; Yasmin, Azra

    2016-09-01

    Soil providing a wide array of ecosystem services is subjected to quality deterioration due to natural and anthropogenic factors. Most of the soils in Pakistan have poor status of available plant nutrients and cannot support optimum levels of crop productivity. The present study statistically analyzed ten soil quality parameters in five subwatersheds (Bari Imam, Chattar, Rumli, Shahdra, and Shahpur) of the Rawal Lake. Analysis of variance (ANOVA), cluster analysis (CA), and principal component analysis (PCA) were performed to evaluate correlation in soil quality parameters on spatiotemporal and vertical scales. Soil organic matter, electrical conductivity, nitrates, and sulfates were found to be lower than that required for good quality soil. Soil pH showed significant difference (p < 0.05) in mean values at different sampling sites and sampling months indicating that it is affected and determined by land uses and seasons. Pearson correlation revealed a strong positive correlation (r = 0.437) between nitrates and organic matter. Application of principal component analysis resulted in three major factors contributing 76 % of the total variance. For factor 1, temperature, sand, silt, clay, and nitrates had the highest factor loading values (>0.75) and indicated that these were the most influential parameters of first factor or component. Cluster analysis separated five sampling sites into three statistically significant clusters: I (Shahdra-Bari Imam), II (Chattar), and III (Shahpur-Rumli). Among the five sites, Shahdra was found to have good quality soil followed by Bari Imam. The present study illustrated the usefulness of multivariate statistical approaches for the analysis and interpretation of complex datasets to understand variations in soil quality for effective watershed management.

  4. Systematic Analysis of Pharmaceutical Preparations of Chondroitin Sulfate Combined with Glucosamine.

    PubMed

    Santos, Gustavo R C; Piquet, Adriana A; Glauser, Bianca F; Tovar, Ana M F; Pereira, Mariana S; Vilanova, Eduardo; Mourão, Paulo A S

    2017-04-01

    Glycosaminoglycans are carbohydrate-based compounds widely employed as nutraceuticals or prescribed drugs. Oral formulations of chondroitin sulfate combined with glucosamine sulfate have been increasingly used to treat the symptoms of osteoarthritis and osteoarthrosis. The chondroitin sulfate of these combinations can be obtained from shark or bovine cartilages and hence presents differences regarding the proportions of 4- and 6-sulfated N-acetyl β-d-galactosamine units. Herein, we proposed a systematic protocol to assess pharmaceutical batches of this combination drug. Chemical analyses on the amounts of chondroitin sulfate and glucosamine in the batches were in accordance with those declared by the manufacturers. Anion-exchange chromatography has proven more effective than electrophoresis to determine the type of chondroitin sulfate present in the combinations and to detect the presence of keratan sulfate, a common contaminant found in batches prepared with shark chondroitin sulfate. 1D NMR spectra revealed the presence of non-sulfated instead of sulfated glucosamine in the formulations and thus in disagreement with the claims declared on the label. Moreover, 1D and 2D NMR analyses allowed a precise determination on the chemical structures of the chondroitin sulfate present in the formulations. The set of analytical tools suggested here could be useful as guidelines to improve the quality of this medication.

  5. Titanium Mass-balance Analysis of Paso Robles Soils: Elemental Gains and Losses as Affected by Acid Alteration Fluids

    NASA Technical Reports Server (NTRS)

    Sutter, Brad; Ming, Douglas W.

    2010-01-01

    The Columbia Hills soils have been exposed to aqueous alteration in alkaline [1] as well as acid conditions [2,3]. The Paso Robles class soils are bright soils that possess the highest S concentration of any soil measured on Mars [2]. Ferric-sulfate detection by Moessbauer analysis indicated that acid solutions were involved in forming these soils [4]. These soils are proposed to have formed by alteration of nearby rock by volcanic hydrothermal or fumarolic activity. The Paso Robles soils consist of the original Paso Robles-disturbed-Pasadena (PR-dist), Paso Robles- PasoLight (PR-PL), Arad-Samra, Arad-Hula, Tyrone- Berker Island1 and Tyrone-MountDarwin [2 ,3. ]Chemical characteristics indicate that the PR-dist and PR-PL soils could be derived from acid weathering of local Wishstone rocks while the Samra and Hula soils are likely derived from local Algonquin-Iroquet rock [3]. The Paso Robles soils were exposed to acidic sulfur bearing fluids; however, little else is known about the chemistry of the alteration fluid and its effects on the alteration of the proposed parent materials. The objectives of this work are to conduct titanium normalized mass-balance analysis to1) assess elemental gains and losses from the parent materials in the formation of the Paso Robles soils and 2) utilize this information to indicate the chemical nature of the alteration fluids.

  6. Alterations of lead speciation by sulfate from addition of flue gas desulfurization gypsum (FGDG) in two contaminated soils

    EPA Science Inventory

    This is the first study to evaluate the potential application of FGDG as an in situ Pb stabilizer in contaminated soils with two different compositions and to explain the underlying mechanisms. A smelter Pb contaminated soil (SM-soil), rich in ferrihydrite bound Pb (FH-Pb), ceru...

  7. Soiling and degradation analysis of solar mirrors

    NASA Astrophysics Data System (ADS)

    Delord, Christine; Blaise, Anthony; Fernandez-García, Aránzazu; Martínez-Arcos, Lucía; Sutter, Florian; Reche-Navarro, Tomás Jesús

    2016-05-01

    The degradation and the soiling of the mirrors are dependent of the solar field and the mirrors technologies, the local climate, the meteorological events, the O&M tasks and the human activities around the site. In the frame of the European project SFERA II, the SODAM project has been the opportunity to compare the soiling and the degradation mechanisms on a Fresnel solar field installed in the South of France and on a parabolic-through solar field installed in the South of Spain. The analysis of the soiling has shown equivalent maximum weekly reflectance loss due to soiling in both sites but a double mean weekly reflectance loss in Spain respect to France, as well as typical meteorological events to be taken into account to adapt the cleaning strategies. Among the meteorological parameters mainly influencing the soiling, the study has revealed the effect of the rain and of the DNI. In parallel, the analysis of the degradation mechanisms has highlighted a common chalking of the protective back paint layers due to the irradiation. This chalking being associated to a leaching of the paint layers in the site of Cadarache due to the high presence of liquid water. A difference in the speed of corrosion of the silver layer has been also noticed, leading to a difference in the mechanisms of delamination of the paints layers.

  8. Differential thermal analysis of lunar soil simulant

    NASA Technical Reports Server (NTRS)

    Tucker, D.; Setzer, A.

    1991-01-01

    Differential thermal analysis of a lunar soil simulant, 'Minnesota Lunar Simulant-1' (MLS-1) was performed. The MLS-1 was tested in as-received form (in glass form) and with another silica. The silica addition was seen to depress nucleation events which lead to a better glass former.

  9. Draft Genome Sequence of Desulfitobacterium hafniense Strain DH, a Sulfate-Reducing Bacterium Isolated from Paddy Soils

    PubMed Central

    Zhang, Xi; Li, Guo-Xiang; Chen, Song-Can; Jia, Xiao-Yu; Wu, Kun; Cao, Chang-Li

    2016-01-01

    Desulfitobacterium hafniense strain DH is a sulfate-reducing species. Here, we report the draft genome sequence of strain DH, with a size of 5,368,588 bp, average G+C content of 47.48%, and 5,296 predicted protein-coding sequences. PMID:26868389

  10. Soil Surface Roughness through Image Analysis

    NASA Astrophysics Data System (ADS)

    Tarquis, A. M.; Saa-Requejo, A.; Valencia, J. L.; Moratiel, R.; Paz-Gonzalez, A.; Agro-Environmental Modeling

    2011-12-01

    Soil erosion is a complex phenomenon involving the detachment and transport of soil particles, storage and runoff of rainwater, and infiltration. The relative magnitude and importance of these processes depends on several factors being one of them surface micro-topography, usually quantified trough soil surface roughness (SSR). SSR greatly affects surface sealing and runoff generation, yet little information is available about the effect of roughness on the spatial distribution of runoff and on flow concentration. The methods commonly used to measure SSR involve measuring point elevation using a pin roughness meter or laser, both of which are labor intensive and expensive. Lately a simple and inexpensive technique based on percentage of shadow in soil surface image has been developed to determine SSR in the field in order to obtain measurement for wide spread application. One of the first steps in this technique is image de-noising and thresholding to estimate the percentage of black pixels in the studied area. In this work, a series of soil surface images have been analyzed applying several de-noising wavelet analysis and thresholding algorithms to study the variation in percentage of shadows and the shadows size distribution. Funding provided by Spanish Ministerio de Ciencia e Innovación (MICINN) through project no. AGL2010- 21501/AGR and by Xunta de Galicia through project no INCITE08PXIB1621 are greatly appreciated.

  11. LC-MSn Analysis of Isomeric Chondroitin Sulfate Oligosaccharides Using a Chemical Derivatization Strategy

    PubMed Central

    Huang, Rongrong; Pomin, Vitor H.; Sharp, Joshua S.

    2011-01-01

    Improved methods for structural analyses of glycosaminoglycans (GAGs) are required to understand their functional roles in various biological processes. Major challenges in structural characterization of complex GAG oligosaccharides using liquid chromatography-mass spectrometry (LC-MS) include the accurate determination of the patterns of sulfation due to gas-phase losses of the sulfate groups upon collisional activation and inefficient on-line separation of positional sulfation isomers prior to MS/MS analyses. Here, a sequential chemical derivatization procedure including permethylation, desulfation, and acetylation was demonstrated to enable both on-line LC separation of isomeric mixtures of chondroitin sulfate (CS) oligosaccharides and accurate determination of sites of sulfation by MSn. The derivatized oligosaccharides have sulfate groups replaced with acetyl groups, which are sufficiently stable to survive MSn fragmentation and reflect the original sulfation patterns. A standard reversed-phase LC-MS system with a capillary C18 column was used for separation, and MSn experiments using collision-induced dissociation (CID) were performed. Our results indicate that the combination of this derivatization strategy and MSn methodology enables accurate identification of the sulfation isomers of CS hexasaccharides with either saturated or unsaturated nonreducing ends. Moreover, derivatized CS hexasaccharide isomer mixtures become separable by LC-MS method due to different positions of acetyl modifications. PMID:21953261

  12. Ferrous Sulfate Supplementation Causes Significant Gastrointestinal Side-Effects in Adults: A Systematic Review and Meta-Analysis

    PubMed Central

    Tolkien, Zoe; Stecher, Lynne; Mander, Adrian P.; Pereira, Dora I. A.; Powell, Jonathan J.

    2015-01-01

    Background The tolerability of oral iron supplementation for the treatment of iron deficiency anemia is disputed. Objective Our aim was to quantify the odds of GI side-effects in adults related to current gold standard oral iron therapy, namely ferrous sulfate. Methods Systematic review and meta-analysis of randomized controlled trials (RCTs) evaluating GI side-effects that included ferrous sulfate and a comparator that was either placebo or intravenous (IV) iron. Random effects meta-analysis modelling was undertaken and study heterogeneity was summarised using I2 statistics. Results Forty three trials comprising 6831 adult participants were included. Twenty trials (n = 3168) had a placebo arm and twenty three trials (n = 3663) had an active comparator arm of IV iron. Ferrous sulfate supplementation significantly increased risk of GI side-effects versus placebo with an odds ratio (OR) of 2.32 [95% CI 1.74–3.08, p<0.0001, I2 = 53.6%] and versus IV iron with an OR of 3.05 [95% CI 2.07-4.48, p<0.0001, I2 = 41.6%]. Subgroup analysis in IBD patients showed a similar effect versus IV iron (OR = 3.14, 95% CI 1.34-7.36, p = 0.008, I2 = 0%). Likewise, subgroup analysis of pooled data from 7 RCTs in pregnant women (n = 1028) showed a statistically significant increased risk of GI side-effects for ferrous sulfate although there was marked heterogeneity in the data (OR = 3.33, 95% CI 1.19-9.28, p = 0.02, I2 = 66.1%). Meta-regression did not provide significant evidence of an association between the study OR and the iron dose. Conclusions Our meta-analysis confirms that ferrous sulfate is associated with a significant increase in gastrointestinal-specific side-effects but does not find a relationship with dose. PMID:25700159

  13. Study of thermochemical sulfate reduction mechanism using compound specific sulfur isotope analysis

    NASA Astrophysics Data System (ADS)

    Meshoulam, Alexander; Ellis, Geoffrey S.; Said Ahmad, Ward; Deev, Andrei; Sessions, Alex L.; Tang, Yongchun; Adkins, Jess F.; Liu, Jinzhong; Gilhooly, William P.; Aizenshtat, Zeev; Amrani, Alon

    2016-09-01

    The sulfur isotopic fractionation associated with the formation of organic sulfur compounds (OSCs) during thermochemical sulfate reduction (TSR) was studied using gold-tube pyrolysis experiments to simulate TSR. The reactants used included n-hexadecane (n-C16) as a model organic compound with sulfate, sulfite, or elemental sulfur as the sulfur source. At the end of each experiment, the S-isotopic composition and concentration of remaining sulfate, H2S, benzothiophene, dibenzothiophene, and 2-phenylthiophene (PT) were measured. The observed S-isotopic fractionations between sulfate and BT, DBT, and H2S in experimental simulations of TSR correlate well with a multi-stage model of the overall TSR process. Large kinetic isotope fractionations occur during the first, uncatalyzed stage of TSR, 12.4‰ for H2S and as much as 22.2‰ for BT. The fractionations decrease as the H2S concentration increases and the reaction enters the second, catalyzed stage. Once all of the oxidizable hydrocarbons have been consumed, sulfate reduction ceases and equilibrium partitioning then dictates the fractionation between H2S and sulfate (∼17‰). Experiments involving sparingly soluble CaSO4 show that during the second catalytic phase of TSR the rate of sulfate reduction exceeds that of sulfate dissolution. In this case, there is no apparent isotopic fractionation between source sulfate and generated H2S, as all of the available sulfate is effectively reduced at all reaction times. When CaSO4 is replaced with fully soluble Na2SO4, sulfate dissolution is no longer rate limiting and significant S-isotopic fractionation is observed. This supports the notion that CaSO4 dissolution can lead to the apparent lack of fractionation between H2S and sulfate produced by TSR in nature. The S-isotopic composition of individual OSCs record information related to geochemical reactions that cannot be discerned from the δ34S values obtained from bulk phases such as H2S, oil, and sulfate minerals, and

  14. Study of thermochemical sulfate reduction mechanism using compound specific sulfur isotope analysis

    USGS Publications Warehouse

    Meshoulam, Alexander; Ellis, Geoffrey S.; Ahmad, Ward Said; Deev, Andrei; Sessions, Alex L.; Tang, Yongchun; Adkins, Jess F.; Liu, Jinzhong; Gilhooly, William P.; Aizenshtat, Zeev; Amrani, Alon

    2016-01-01

    Experiments involving sparingly soluble CaSO4 show that during the second catalytic phase of TSR the rate of sulfate reduction exceeds that of sulfate dissolution. In this case, there is no apparent isotopic fractionation between source sulfate and generated H2S, as all of the available sulfate is effectively reduced at all reaction times. When CaSO4 is replaced with fully soluble Na2SO4, sulfate dissolution is no longer rate limiting and significant S-isotopic fractionation is observed. This supports the notion that CaSO4dissolution can lead to the apparent lack of fractionation between H2S and sulfate produced by TSR in nature. The S-isotopic composition of individual OSCs record information related to geochemical reactions that cannot be discerned from the δ34S values obtained from bulk phases such as H2S, oil, and sulfate minerals, and provide important mechanistic details about the overall TSR process.

  15. Soil temperature calculation for burial site analysis.

    PubMed

    Prangnell, Jonathan; McGowan, Glenys

    2009-10-30

    The effect of air and water temperature upon the decomposition of human remains and upon biological activity has been extensively studied. However, less attention has been devoted to the temperature of the soil surrounding burials, despite its potential influence upon chemical reactions involved in the decomposition of human remains, drugs and toxins, as well as upon microbial and insect activity. A soil temperature calculation equation usually employed in civil engineering was used to calculate soil temperature at various depths in a cemetery located in Brisbane, Australia, in order to explain the extensive degradation of human remains and funerary objects observed at exhumation. The results showed that for the 160 years of the site's history, ground temperature at burial level had been sufficiently high for biological activity and chemical degradation reactions to continue right up until the time of exhumation. The equation used has potential in the analysis of both cemetery and clandestine burials, since it allows ground temperature to be calculated from ambient air temperature figures, for a variety of depths, soil types and vegetation conditions.

  16. Sulfated glycosaminoglycans from crown-of-thorns Acanthaster planci – extraction and quantification analysis

    PubMed Central

    Bahrom, Nur Afiqah; Sirajudeen, KNS; Yip, George W; Latiff, Aishah A; Ghazali, Farid Che

    2013-01-01

    In this article, the novel inventive steps for the extraction and quantification of sulfated glycosaminoglycan (GAG) from Acanthaster planci starfish, generally known as crown-of-thorns (COT), are reported. Starfish have been implicated with collagenous distributions within their body anatomy, thus making it a prima facie fact searching for the possibility that GAGs can be isolated from COT. In this study, total-, N-, and O-sulfated GAGs were extracted from three anatomical regions of the COT (integument, internal tissue, and coelomic fluid) and comparison was made. The result showed that body region of COT seemed to contain higher amount of sulfated GAGs as opposed to the arm region (55.79 ± 0.65 μg/mg was the highest amount in the body extracted from its coelomic fluid and 32.28 ± 3.14 μg/mg was the highest amount in the arm extracted from its internal tissue). COT's integument and coelomic fluid from its body region possessed the highest total of sulfated GAGs content with no significant difference (P < 0.05) between the two. All GAGs from COT comprised a higher percentage of N-sulfated GAGs than its counterpart, the O-sulfated GAGs. When compared with a similar previous study that used sea cucumbers as the sulfated GAGs source, COT possessed more total sulfated GAGs content per milligram as compared with the sea cucumber generally. This result seems to unveil this marine species' advantage per se pertaining to GAGs extraction biomass applicability. Thus, COT could now be the better alternative source for production technology of total-, N-, and O-sulfated GAGs. PMID:24804017

  17. Akaganéite (β-FeOOH) precipitation in inland acid sulfate soils of south-western New South Wales (NSW), Australia

    NASA Astrophysics Data System (ADS)

    Bibi, Irshad; Singh, Balwant; Silvester, Ewen

    2011-11-01

    The prevalence of sulphidic sediments in inland wetlands has been only recently recognized in many parts of the world, including Australia. The exposure of sulphidic sediments in these wetlands due to natural and human induced drying events has resulted in the oxidation of iron sulfide minerals, the formation of secondary iron minerals characteristic of acid sulfate soils and the release of highly acidic solutions. The objective of this study was to determine the mineralogy and morphology of sediments collected from the oxidized surface horizon (0-5 cm) of an inland acid sulfate soil located in south-western New South Wales (NSW), Australia. Random powder X-ray diffraction (XRD), transmission electron microscopy (TEM) and scanning transmission electron microscopy combined with energy dispersive X-ray spectroscopy (STEM-EDS) techniques were used to characterize the minerals present in these sediments. Akaganéite was identified as the major mineral phase in the sediments; K-jarosite was also determined in small amounts in some sediments. The XRD patterns of sequentially washed (E-pure® water-0.01 M HCl-0.01 M EDTA) sediment samples showed all akaganéite peaks; the Rietveld refinement of these patterns also revealed a predominance of akaganéite. The chemical analyses of the original and washed sediments using STEM-EDS clearly showed the presence of akaganéite as a pure mineral phase with an average Fe/Cl mole ratio of 6.7 and a structural formula of Fe 8O 8(OH) 6.8(Cl) 1.2. These findings show that the extreme saline-acidic solutions (pH ˜ 2, EC = 216 dS/m) at the Bottle Bend lagoon provide ideal conditions for the crystallization of this rarely forming mineral.

  18. Analysis of sulfate metabolites of the doping agents oxandrolone and danazol using high performance liquid chromatography coupled to tandem mass spectrometry.

    PubMed

    Rzeppa, S; Viet, L

    2016-09-01

    The direct detection of sulfate conjugates of anabolic androgenic steroids (AAS) can be a powerful tool in doping control analysis. By skipping the solvolysis step analysis time can be reduced, and due to long term sulfate metabolites the detection time can be significantly extended as demonstrated for some AAS. This study presents the successful identification of sulfate metabolites of the doping agents oxandrolone and danazol in excretion urines by high performance liquid chromatography coupled to tandem mass spectrometry (HPLC-MS/MS). The sulfate conjugate of 17β-hydroxymethyl-17α-methyl-18-nor-2-oxa-5α-androsta-13-en-3-one could be identified as a new metabolite of oxandrolone. Sulfate conjugates of the danazol metabolites ethisterone and 2α-hydroxymethylethisterone were identified in an excretion urine for the first time. In addition, these sulfate conjugates were synthesized successfully. For a confirmation analysis, the number of analytes can be increased by additional sulfate conjugates of danazol metabolites (2-hydroxymethyl-1,2-dehydroethisterone and 6β-hydroxy-2-hydroxymethylethisterone), which were also identified for the first time. The presented validation data underline the suitability of the identified sulfate conjugates for doping analysis with regard to the criteria given by the technical documents of the World Anti-Doping Agency (WADA).

  19. Morphological, structural, and spectral characteristics of amorphous iron sulfates

    NASA Astrophysics Data System (ADS)

    Sklute, E. C.; Jensen, H. B.; Rogers, A. D.; Reeder, R. J.

    2015-04-01

    Current or past brine hydrologic activity on Mars may provide suitable conditions for the formation of amorphous ferric sulfates. Once formed, these phases would likely be stable under current Martian conditions, particularly at low- to mid-latitudes. Therefore, we consider amorphous iron sulfates (AIS) as possible components of Martian surface materials. Laboratory AIS were created through multiple synthesis routes and characterized with total X-ray scattering, thermogravimetric analysis, scanning electron microscopy, visible/near-infrared (VNIR), thermal infrared (TIR), and Mössbauer techniques. We synthesized amorphous ferric sulfates (Fe(III)2(SO4)3 · ~ 6-8H2O) from sulfate-saturated fluids via vacuum dehydration or exposure to low relative humidity (<11%). Amorphous ferrous sulfate (Fe(II)SO4 · ~ 1H2O) was synthesized via vacuum dehydration of melanterite. All AIS lack structural order beyond 11 Å. The short-range (<5 Å) structural characteristics of amorphous ferric sulfates resemble all crystalline reference compounds; structural characteristics for the amorphous ferrous sulfate are similar to but distinct from both rozenite and szomolnokite. VNIR and TIR spectral data for all AIS display broad, muted features consistent with structural disorder and are spectrally distinct from all crystalline sulfates considered for comparison. Mössbauer spectra are also distinct from crystalline phase spectra available for comparison. AIS should be distinguishable from crystalline sulfates based on the position of their Fe-related absorptions in the visible range and their spectral characteristics in the TIR. In the NIR, bands associated with hydration at ~1.4 and 1.9 µm are significantly broadened, which greatly reduces their detectability in soil mixtures. AIS may contribute to the amorphous fraction of soils measured by the Curiosity rover.

  20. STATISTICAL VALIDATION OF SULFATE QUANTIFICATION METHODS USED FOR ANALYSIS OF ACID MINE DRAINAGE

    EPA Science Inventory

    Turbidimetric method (TM), ion chromatography (IC) and inductively coupled plasma atomic emission spectrometry (ICP-AES) with and without acid digestion have been compared and validated for the determination of sulfate in mining wastewater. Analytical methods were chosen to compa...

  1. Effects of the addition of nitrogen and sulfate on CH4 and CO2 emissions, soil, and pore water chemistry in a high marsh of the Min River estuary in southeastern China.

    PubMed

    Hu, Minjie; Wilson, Benjamin J; Sun, Zhigao; Ren, Peng; Tong, Chuan

    2017-02-01

    Exogenous nitrogen (N) and sulfate (SO4(2-)), resulting from human activity, can strongly influence the emission of CH4 and CO2 from soil ecosystems. Studies have reported the effects of N and SO4(2-) on CH4 and CO2 emissions from inland peatlands and paddies. However, very few studies have presented year-round data on the effects of the addition of N and SO4(2-) on CH4 and CO2 emissions in estuarine marshes. The effects of the addition of N and SO4(2-) on the emission of CH4 and CO2 were investigated in a Cyperus malaccensis marsh in the high tidal flat of the Min River estuary of southeastern China from September 2014 to August 2015. Dissolved NH4Cl, KNO3, and K2SO4 were applied every month, in doses of 24gN/SO4(2-)m(-2)·yr(-1). The emission of CH4 and CO2 showed distinct monthly and seasonal variations. Compared with the control, the addition of NH4Cl and NH4NO3+K2SO4 showed increases in CH4 fluxes (p<0.05), while the effects of the addition of KNO3 and K2SO4 on CH4 were minor (p>0.05). NH4Cl had a positive impact on CO2 emissions (p<0.01), while the addition of KNO3, K2SO4, and NH4NO3+K2SO4 had minor positive impacts, compared to the control (p>0.05). Correlation analysis found that soil sulfate concentration, nitrogen availability and enzyme activity were the dominant factors influencing CH4 and CO2 variation. Our findings suggest that CH4 and CO2 emissions were influenced more by ammonium than by nitrate. We propose that the suppressive effect of additional sulfate on CH4 production is insignificant, due to which the inhibition may be overestimated in the estuarine brackish marsh.

  2. Measurements of Rural Sulfur Dioxide and Particle Sulfate: Analysis of CASTNet Data, 1987 through 1996.

    PubMed

    Baumgardner, Ralph E; Isil, Selma S; Bowser, Jon J; Fitzgerald, Kelley M

    1999-11-01

    The Clean Air Status and Trends Network (CASTNet) was implemented by the U.S. Environmental Protection Agency (EPA) in 1991 in response to Title IX of the Clean Air Amendments of 1990, which mandated the deployment of a national ambient air monitoring network to track progress of the implementation of emission reduction programs in terms of deposition, air quality, and changes to affected ecosystems. CASTNet evolved from the National Dry Deposition Network (NDDN). CASTNet currently consists of 45 sites in the eastern United States and 28 sites in the West. Each site measures sulfur dioxide (SO2), nitric acid (HNO3), particle sulfate (SO4(=)), particle nitrate (NO3(-) ), and ozone. Nineteen sites collect precipitation samples. NDDN/CASTNet uses a uniform set of site-selection criteria which provides the data user with consistent measures to compare each site. These criteria also ensure that, to the extent possible, CASTNet sites are located away from local emission sources. This paper presents an analysis of SO2 and SO4(=) concentration data collected from 1987 through 1996 at rural NDDN/CASTNet sites. Annual and seasonal variability is examined. Gradients of SO2 and SO4(=) are discussed. The variability of the atmospheric mix of SO2 and SO4(=) is explored spatially and seasonally. Data from CASTNet are also compared to SO2 and SO4(=) data from concurrent monitoring studies in rural areas.

  3. Component analysis and heavy metal adsorption ability of extracellular polymeric substances (EPS) from sulfate reducing bacteria.

    PubMed

    Yue, Zheng-Bo; Li, Qing; Li, Chuan-chuan; Chen, Tian-hu; Wang, Jin

    2015-10-01

    Extracellular polymeric substances (EPS) play an important role in the treatment of acid mine drainage (AMD) by sulfate-reducing bacteria (SRB). In this paper, Desulfovibrio desulfuricans was used as the test strain to explore the effect of heavy metals on the components and adsorption ability of EPS. Fourier-transform infrared (FTIR) spectroscopy analysis results showed that heavy metals did not influence the type of functional groups of EPS. Potentiometric titration results indicated that the acidic constants (pKa) of the EPS fell into three ranges of 3.5-4.0, 5.9-6.7, and 8.9-9.8. The adsorption site concentrations of the surface functional groups also increased. Adsorption results suggested that EPS had a specific binding affinity for the dosed heavy metal, and that EPS extracted from the Zn(2+)-dosed system had a higher binding affinity for all heavy metals. Additionally, Zn(2+) decreased the inhibitory effects of Cd(2+) and Cu(2+) on the SRB.

  4. Analysis of colistin sulfate by capillary zone electrophoresis with cyclodextrins as additive.

    PubMed

    Kang, J; Vankeirsbilck, T; Van Schepdael, A; Orwa, J; Roets, E; Hoogmartens, J

    2000-09-01

    A method for the quantitative analysis of colistin sulfate by capillary zone electrophoresis is described. Since colistin components have five free amino groups, they tend to adsorb onto the capillary wall and cause peak tailing. It was found that triethanolamine (TEA)-phosphate buffer at pH 2.5 was useful to reduce such adsorption. Methyl-beta-cyclodextrin (M-beta-CD) and 2-propanol (IPA) were found necessary for selectivity enhancement. In order to optimize the separation parameters and predict the method robustness, a central composite design was performed including three variables, namely concentration of M-beta-CD, TEA, and IPA. The effects of capillary length and applied voltage on separation were also investigated. The optimal conditions established were: 140 mM TEA-phosphate buffer containing 5 mM M-beta-CD and 6% v/v IPA, a capillary with 55 cm total length (50 microm inner diameter, 47 cm from inlet to detection window) and 24 kV applied voltage. The method was found to be robust when the variables were changed in the following range: 4-6 mM M-beta-CD, 5-7% v/v IPA, and 130-150 mM TEA. Further, the linearity, limit of detection (LOD), and limit of quantitation (LOQ), as well as repeatability for both colistin A and B were examined and three commercial samples were quantitatively analyzed.

  5. Adding sodium dodecyl sulfate and Pseudomonas aeruginosa UG2 biosurfactants inhibits polycyclic aromatic hydrocarbon biodegradation in a weathered creosote-contaminated soil.

    PubMed

    Deschênes, L; Lafrance, P; Villeneuve, J P; Samson, R

    1996-12-01

    The effect of two anionic surfactants was assessed during biodegradation of 13 of the 16 USEPA priority polycyclic aromatic hydrocarbons (PAH) in a wood-preserving soil contaminated with creosote and pentacholorophenol for a period of at least 20 years. Sodium dodecyl sulfate (SDS) and biosurfactants from Pseudomonas aeruginosa UG2 were utilized at concentrations of 10, 100 and 500 micrograms/g soil. Because both surfactants are readily biodegradable, the microcosms received a fresh spike of surfactant every 2 weeks. Biodegradation of aged PAH residues was monitored by GC/MS for a period of 45 weeks. Results indicated that the biodegradation of the three-ring PAH was rapid and almost complete but was slowed by the addition of 100 micrograms/g and 500 micrograms/g chemical surfactant. Similarly, at the same concentrations, the two surfactants significantly decreased the biodegradation rate of the four-ring PAH. In this case, the inhibition was more pronounced with SDS. High-molecular-mass PAH (more than four rings) were not biodegraded under the test conditions. It was suggested that the preferential utilization of surfactants by PAH degraders was responsible for the inhibition observed in the biodegradation of the hydrocarbons. The high biodegradability and the inhibitory effect of these two surfactants would have a significant impact on the development of both above-ground and in situ site reclamation processes.

  6. Monitoring the soil degradation by Metastatistical Analysis

    NASA Astrophysics Data System (ADS)

    Oleschko, K.; Gaona, C.; Tarquis, A.

    2009-04-01

    The effectiveness of fractal toolbox to capture the critical behavior of soil structural patterns during the chemical and physical degradation was documented by our numerous experiments (Oleschko et al., 2008 a; 2008 b). The spatio-temporal dynamics of these patterns was measured and mapped with high precision in terms of fractal descriptors. All tested fractal techniques were able to detect the statistically significant differences in structure between the perfect spongy and massive patterns of uncultivated and sodium-saline agricultural soils, respectively. For instance, the Hurst exponent, extracted from the Chernozeḿ micromorphological images and from the time series of its physical and mechanical properties measured in situ, detected the roughness decrease (and therefore the increase in H - from 0.17 to 0.30 for images) derived from the loss of original structure complexity. The combined use of different fractal descriptors brings statistical precision into the quantification of natural system degradation and provides a means for objective soil structure comparison (Oleschko et al., 2000). The ability of fractal parameters to capture critical behavior and phase transition was documented for different contrasting situations, including from Andosols deforestation and erosion, to Vertisols high fructuring and consolidation. The Hurst exponent is used to measure the type of persistence and degree of complexity of structure dynamics. We conclude that there is an urgent need to select and adopt a standardized toolbox for fractal analysis and complexity measures in Earth Sciences. We propose to use the second-order (meta-) statistics as subtle measures of complexity (Atmanspacher et al., 1997). The high degree of correlation was documented between the fractal and high-order statistical descriptors (four central moments of stochastic variable distribution) used to the system heterogeneity and variability analysis. We proposed to call this combined fractal

  7. In-situ soil carbon analysis using inelastic neutron scattering

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In situ soil carbon analysis using inelastic neutron scattering (INS) is based on the emission of 4.43 MeV gamma rays from carbon nuclei excited by fast neutrons. This in-situ method has excellent potential for easily measuring soil carbon since it does not require soil core sampling and processing ...

  8. Development of a surface scanning soil analysis instrument.

    PubMed

    Falahat, S; Köble, T; Schumann, O; Waring, C; Watt, G

    2012-07-01

    ANSTO is developing a nuclear field instrument for measurement of soil composition; particularly carbon. The instrument utilises the neutron activation approach with clear advantages over existing soil sampling and laboratory analysis. A field portable compact pulsed neutron generator and γ-ray detector are used for PGNAA and INS techniques simultaneously. Many elements can be quantified from a homogenised soil volume equivalent to the top soil layers. Results from first test experiments and current developments are reported.

  9. Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus.

    PubMed

    Morais-Silva, Fabio O; Rezende, Antonio Mauro; Pimentel, Catarina; Santos, Catia I; Clemente, Carla; Varela-Raposo, Ana; Resende, Daniela M; da Silva, Sofia M; de Oliveira, Luciana Márcia; Matos, Marcia; Costa, Daniela A; Flores, Orfeu; Ruiz, Jerónimo C; Rodrigues-Pousada, Claudina

    2014-08-01

    Desulfovibrio gigas is a model organism of sulfate-reducing bacteria of which energy metabolism and stress response have been extensively studied. The complete genomic context of this organism was however, not yet available. The sequencing of the D. gigas genome provides insights into the integrated network of energy conserving complexes and structures present in this bacterium. Comparison with genomes of other Desulfovibrio spp. reveals the presence of two different CRISPR/Cas systems in D. gigas. Phylogenetic analysis using conserved protein sequences (encoded by rpoB and gyrB) indicates two main groups of Desulfovibrio spp, being D. gigas more closely related to D. vulgaris and D. desulfuricans strains. Gene duplications were found such as those encoding fumarate reductase, formate dehydrogenase, and superoxide dismutase. Complexes not yet described within Desulfovibrio genus were identified: Mnh complex, a v-type ATP-synthase as well as genes encoding the MinCDE system that could be responsible for the larger size of D. gigas when compared to other members of the genus. A low number of hydrogenases and the absence of the codh/acs and pfl genes, both present in D. vulgaris strains, indicate that intermediate cycling mechanisms may contribute substantially less to the energy gain in D. gigas compared to other Desulfovibrio spp. This might be compensated by the presence of other unique genomic arrangements of complexes such as the Rnf and the Hdr/Flox, or by the presence of NAD(P)H related complexes, like the Nuo, NfnAB or Mnh.

  10. Molecular analysis of the human SLC13A4 sulfate transporter gene promoter

    SciTech Connect

    Jefferis, J.; Rakoczy, J.; Simmons, D.G.; Dawson, P.A.

    2013-03-29

    Highlights: ► Basal promoter activity of SLC13A4 −57 to −192 nt upstream of transcription initiation site. ► Human SLC13A4 5′-flanking region has conserved motifs with other placental species. ► Putative NFY, SP1 and KLF7 motifs in SLC13A4 5′-flanking region enhance transcription. -- Abstract: The human solute linked carrier (SLC) 13A4 gene is primarily expressed in the placenta where it is proposed to mediate the transport of nutrient sulfate from mother to fetus. The molecular mechanisms involved in the regulation of SLC13A4 expression remain unknown. To investigate the regulation of SLC13A4 gene expression, we analysed the transcriptional activity of the human SLC13A4 5′-flanking region in the JEG-3 placental cell line using luciferase reporter assays. Basal transcriptional activity was identified in the region −57 to −192 nucleotides upstream of the SLC13A4 transcription initiation site. Mutational analysis of the minimal promoter region identified Nuclear factor Y (NFY), Specificity protein 1 (SP1) and Krüppel like factor 7 (KLF7) motifs which conferred positive transcriptional activity, as well as Zinc finger protein of the cerebellum 2 (ZIC2) and helix–loop–helix protein 1 (HEN1) motifs that repressed transcription. The conserved NFY, SP1, KLF7, ZIC2 and HEN1 motifs in the SLC13A4 promoter of placental species but not in non-placental species, suggests a potential role for these putative transcriptional factor binding motifs in the physiological control of SLC13A4 mRNA expression.

  11. Effects of nitrate and water on the oxygen isotopic analysis of barium sulfate precipitated from solution

    USGS Publications Warehouse

    Hannon, Janet E.; Bohlke, Johnkarl F.; Mroczkowski, Stanley J.

    2008-01-01

    BaSO4 precipitated from mixed salt solutions by common techniques for SO isotopic analysis may contain quantities of H2O and NOthat introduce errors in O isotope measurements. Experiments with synthetic solutions indicate that δ18O values of CO produced by decomposition of precipitated BaSO4 in a carbon reactor may be either too low or too high, depending on the relative concentrations of SO and NO and the δ18O values of the H2O, NO, and SO. Typical δ18O errors are of the order of 0.5 to 1‰ in many sample types, and can be larger in samples containing atmospheric NO, which can cause similar errors in δ17O and Δ17O. These errors can be reduced by (1) ion chromatographic separation of SO from NO, (2) increasing the salinity of the solutions before precipitating BaSO4 to minimize incorporation of H2O, (3) heating BaSO4 under vacuum to remove H2O, (4) preparing isotopic reference materials as aqueous samples to mimic the conditions of the samples, and (5) adjusting measured δ18O values based on amounts and isotopic compositions of coexisting H2O and NO. These procedures are demonstrated for SO isotopic reference materials, synthetic solutions with isotopically known reagents, atmospheric deposition from Shenandoah National Park, Virginia, USA, and sulfate salt deposits from the Atacama Desert, Chile, and Mojave Desert, California, USA. These results have implications for the calibration and use of O isotope data in studies of SOsources and reaction mechanisms.

  12. Genome sequence of the model sulfate reducer Desulfovibrio gigas: a comparative analysis within the Desulfovibrio genus*

    PubMed Central

    Morais-Silva, Fabio O; Rezende, Antonio Mauro; Pimentel, Catarina; Santos, Catia I; Clemente, Carla; Varela–Raposo, Ana; Resende, Daniela M; da Silva, Sofia M; de Oliveira, Luciana Márcia; Matos, Marcia; Costa, Daniela A; Flores, Orfeu; Ruiz, Jerónimo C; Rodrigues-Pousada, Claudina

    2014-01-01

    Desulfovibrio gigas is a model organism of sulfate-reducing bacteria of which energy metabolism and stress response have been extensively studied. The complete genomic context of this organism was however, not yet available. The sequencing of the D. gigas genome provides insights into the integrated network of energy conserving complexes and structures present in this bacterium. Comparison with genomes of other Desulfovibrio spp. reveals the presence of two different CRISPR/Cas systems in D. gigas. Phylogenetic analysis using conserved protein sequences (encoded by rpoB and gyrB) indicates two main groups of Desulfovibrio spp, being D. gigas more closely related to D. vulgaris and D. desulfuricans strains. Gene duplications were found such as those encoding fumarate reductase, formate dehydrogenase, and superoxide dismutase. Complexes not yet described within Desulfovibrio genus were identified: Mnh complex, a v-type ATP-synthase as well as genes encoding the MinCDE system that could be responsible for the larger size of D. gigas when compared to other members of the genus. A low number of hydrogenases and the absence of the codh/acs and pfl genes, both present in D. vulgaris strains, indicate that intermediate cycling mechanisms may contribute substantially less to the energy gain in D. gigas compared to other Desulfovibrio spp. This might be compensated by the presence of other unique genomic arrangements of complexes such as the Rnf and the Hdr/Flox, or by the presence of NAD(P)H related complexes, like the Nuo, NfnAB or Mnh. PMID:25055974

  13. Confirmation of Soluble Sulfate at the Phoenix Landing Site: Implications for Martian Geochemistry and Habitability

    NASA Technical Reports Server (NTRS)

    Kounaves, S. P.; Hecht, M. H.; Kapit, J.; Quinn, R. C.; Catling, D. C.; Clark, B. C.; Ming, D. W.; Gospodinova, K.; Hredzak, P.; McElhoney, K.; Shusterman, J.

    2010-01-01

    Over the past several decades, elemental sulfur in martian soils and rocks has been detected by a number of missions using X-ray spectroscopy [1-3]. Optical spectroscopy has also provided evidence for widespread sulfates on Mars [4,5]. The ubiquitous presence of sulfur in soils has been interpreted as a widely distributed sulfate mineralogy [6]. However, direct confirmation as to the identity and solubility of the sulfur species in martian soil has never been obtained. One goal of the Wet Chemistry Laboratory (WCL) [7] on board the 2007 Phoenix Mars Lander [8] was to determine soluble sulfate in the martian soil. The WCL received three primary samples. Each sample was added to 25 mL of leaching solution and analysed for solvated ionic species, pH, and conductivity [9,10]. The analysis also showed a discrepancy between charge balance, ionic strength, and conductivity, suggesting unidentified anionic species.

  14. Controlling Sulfate Attack in Mississippi Department of Transportation Structures

    DTIC Science & Technology

    2010-08-01

    suitable for use in high -sulfate environments. In this accelerated test, changes in the unconfined com- pressive strength of cement paste cubes after...deterioration of con- crete in contact with the surrounding soil could be related to the high sul- fate content of the adjacent soils. Studies dating to 1966...contact with the surrounding soil could be related to the high sulfate con- tent of the adjacent soils. Studies dating to 1966 have documented sulfate

  15. Synthesis of a heparin-related GlcN-IdoA sulfation-site variable disaccharide library and analysis by Raman and ROA spectroscopy.

    PubMed

    Miller, Gavin J; Hansen, Steen U; Baráth, Marek; Johannessen, Christian; Blanch, Ewan W; Jayson, Gordon C; Gardiner, John M

    2014-12-05

    Synthesis of an array of differentially sulfated GlcN-IdoA disaccharides, accessible on good scale, directly from l-iduronate components is described. These are specifically directed to provide the sulfation variability at the key most common biologically relevant sulfation-variable l-IdoA O-2 and d-GlcN O-6 and amino sites of this heparin disaccharide. This sulfation-varied matrix has allowed the first evaluation of using Raman/ROA spectroscopy to characterize changes in spectra as a function of both site and level of sulfation with pure, defined heparin-related disaccharide species. This provides analysis of both similarities and differences to digest native heparin and this shows evidence of different types of changes in conformations and conformational freedom as a function of some specific sulfation changes at the disaccharide level. It is anticipated that this data set will open the way for applications to further site-specific sulfated saccharides and demonstrates the capability offered by Raman-ROA towards fingerprinting sulfation in heparin fragments.

  16. Analysis of perfluorinated carboxylic acids in soils II: optimization of chromatography and extraction.

    PubMed

    Washington, John W; Henderson, W Matthew; Ellington, J Jackson; Jenkins, Thomas M; Evans, John J

    2008-02-15

    With the objective of detecting and quantitating low concentrations of perfluorinated carboxylic acids (PFCAs), including perfluorooctanoic acid (PFOA), in soils, we compared the analytical suitability of liquid chromatography columns containing three different stationary phases, two different liquid chromatography-tandem mass spectrometry (LC/MS/MS) systems, and eight combinations of sample-extract pretreatments, extractions and cleanups on three test soils. For the columns and systems we tested, we achieved the greatest analytical sensitivity for PFCAs using a column with a C(18) stationary phase in a Waters LC/MS/MS. In this system we achieved an instrument detection limit for PFOA of 270 ag/microL, equating to about 14 fg of PFOA on-column. While an elementary acetonitrile/water extraction of soils recovers PFCAs effectively, natural soil organic matter also dissolved in the extracts commonly imparts significant noise that appears as broad, multi-nodal, asymmetric peaks that coelute with several PFCAs. The intensity and elution profile of this noise is highly variable among soils and it challenges detection of low concentrations of PFCAs by decreasing the signal-to-noise contrast. In an effort to decrease this background noise, we investigated several methods of pretreatment, extraction and cleanup, in a variety of combinations, that used alkaline and unbuffered water, acetonitrile, tetrabutylammonium hydrogen sulfate, methyl-tert-butyl ether, dispersed activated carbon and solid-phase extraction. For the combined objectives of complete recovery and minimization of background noise, we have chosen: (1) alkaline pretreatment; (2) extraction with acetonitrile/water; (3) evaporation to dryness; (4) reconstitution with tetrabutylammonium-hydrogen-sulfate ion-pairing solution; (5) ion-pair extraction to methyl-tert-butyl ether; (6) evaporation to dryness; (7) reconstitution with 60/40 acetonitrile/water (v/v); and (8) analysis by LC/MS/MS. Using this method, we

  17. The SPASIBA force field for chondroitin sulfate: vibrational analysis of D-glucuronic and N-acetyl-D-galactosamine 4-sulfate sodium salts.

    PubMed

    Meziane-Tani, M; Lagant, P; Semmoud, A; Vergoten, G

    2006-10-05

    Normal-mode analyses were carried out on the two components of the chondroitin 4-sulfate linear glycosaminoglycan, a copolymer implying alternate D-glucuronate beta-(1-->3) and N-acetyl-D-galactosamine 4-sulfate beta-(1-->4) (hereafter named D-galactosamine 4-sulfate) residues. Scaled quantum mechanical calculations (SQM) using the density functional theory approach at different levels of theory (B3LYP/6-31G** and B3LYP/6-31++G**) were performed to obtain correct vibrational assignments. The SPASIBA empirical force field parameters were then obtained from both theoretical predictions and observed IR and Raman data. It is shown that calculations including diffuse functions at the B3LP/6-31++G** level and the introduction of the Na+ counterion are necessary to give correct assignments of the CO2- symmetric (nu(s)) and antisymmetric (nu(a)) stretching modes for the glucuronic carboxylate residue.

  18. Analysis of sperm antigens by sodium dodecyl sulfate gel/protein blot radioimmunobinding method

    SciTech Connect

    Lee, C.Y.G.; Huang, Y.S.; Hu, P.C.; Gomel, V.; Menge, A.C.

    1982-06-01

    A radioimmunobinding method based on the blotting of renatured proteins from sodium dodecyl sulfate gels on to nitrocellulose filter papers was developed to analyze the sperm antigens that elicit serum anti-sperm antibodies. In rabbits, serum anti-sperm antibodies were raised by immunization with homologous epididymal spermatozoa mixed with complete Freund's adjuvant. The raised antisera from either male or female rabbits were shown to react with three major sperm protein bands on sodium dodecyl sulfate gels with the corresponding molecular weights of about 70,000 +/- 5000, 14,000, and 13,000, respectively. In humans, the monoclonal antibodies against human sperm were raised by a hybridoma technique. Out of six independent hybrid cell lines that were generated, three of them were shown to secrete immunoglobulins that react with the same two protein bands on sodium dodecyl sulfate gels, which have the approximate molecular weight of 10,000. The same procedure was also used to analyze human serum samples that were shown to contain anti-sperm antibodies by the known techniques. Unique sperm antigens that elicit anti-sperm antibodies in humans were identified and correlated. The results of this study suggest that sodium dodecyl sulfate gel/protein blot radioimmunobinding method may be a sensitive and useful tool for the study of sperm antigens that elicit autoimmune responses and their association with human infertility.

  19. Metatranscriptomic analysis of arctic peat soil microbiota.

    PubMed

    Tveit, Alexander T; Urich, Tim; Svenning, Mette M

    2014-09-01

    Recent advances in meta-omics and particularly metatranscriptomic approaches have enabled detailed studies of the structure and function of microbial communities in many ecosystems. Molecular analyses of peat soils, ecosystems important to the global carbon balance, are still challenging due to the presence of coextracted substances that inhibit enzymes used in downstream applications. We sampled layers at different depths from two high-Arctic peat soils in Svalbard for metatranscriptome preparation. Here we show that enzyme inhibition in the preparation of metatranscriptomic libraries can be circumvented by linear amplification of diluted template RNA. A comparative analysis of mRNA-enriched and nonenriched metatranscriptomes showed that mRNA enrichment resulted in a 2-fold increase in the relative abundance of mRNA but biased the relative distribution of mRNA. The relative abundance of transcripts for cellulose degradation decreased with depth, while the transcripts for hemicellulose debranching increased, indicating that the polysaccharide composition of the peat was different in the deeper and older layers. Taxonomic annotation revealed that Actinobacteria and Bacteroidetes were the dominating polysaccharide decomposers. The relative abundances of 16S rRNA and mRNA transcripts of methanogenic Archaea increased substantially with depth. Acetoclastic methanogenesis was the dominating pathway, followed by methanogenesis from formate. The relative abundances of 16S rRNA and mRNA assigned to the methanotrophic Methylococcaceae, primarily Methylobacter, increased with depth. In conclusion, linear amplification of total RNA and deep sequencing constituted the preferred method for metatranscriptomic preparation to enable high-resolution functional and taxonomic analyses of the active microbiota in Arctic peat soil.

  20. The role of Soil Water Retention Curve in slope stability analysis in unsaturated and heterogeneous soils.

    NASA Astrophysics Data System (ADS)

    Antinoro, Chiara; Arnone, Elisa; Noto, Leonardo V.

    2015-04-01

    The mechanisms of rainwater infiltration causing slope instability had been analyzed and reviewed in many scientific works. Rainwater infiltration into unsaturated soil increases the degree of saturation, hence affecting the shear strength properties and thus the probability of slope failure. It has been widely proved that the shear strength properties change with the soil water suction in unsaturated soils; therefore, the accuracy to predict the relationship between soil water content and soil water suction, parameterized by the soil-water characteristic curve, has significant effects on the slope stability analysis. The aim of this study is to investigate how the characterization of SWRC of differently structured unsaturated soils affects the slope stability on a simple infinite slope. In particular, the unimodal and bimodal distributions of the soil pore size were compared. Samples of 40 soils, highly different in terms of structure and texture, were collected and used to calibrate two bimodal SWRCs, i.e. Ross and Smettem (1993) and Dexter et al., (2008). The traditional unimodal van Genuchten (1980) model was also applied for comparison. Slope stability analysis was conducted in terms of Factor of Safety (FS) by applying the infinite slope model for unsaturated soils. In the used formulation, the contribution of the suction effect is tuned by a parameter 'chi' in a rate proportional to the saturation conditions. Different parameterizations of this term were also compared and analyzed. Results indicated that all three SWRC models showed good overall performance in fitting the sperimental SWRCs. Both the RS and DE models described adequately the water retention data for soils with a bimodal behavior confirmed from the analysis of pore size distribution, but the best performance was obtained by DE model confirmed. In terms of FS, the tree models showed very similar results as soil moisture approached to the saturated condition; however, within the residual zone

  1. A global analysis of soil acidification caused by nitrogen addition

    NASA Astrophysics Data System (ADS)

    Tian, Dashuan; Niu, Shuli

    2015-02-01

    Nitrogen (N) deposition-induced soil acidification has become a global problem. However, the response patterns of soil acidification to N addition and the underlying mechanisms remain far from clear. Here, we conducted a meta-analysis of 106 studies to reveal global patterns of soil acidification in responses to N addition. We found that N addition significantly reduced soil pH by 0.26 on average globally. However, the responses of soil pH varied with ecosystem types, N addition rate, N fertilization forms, and experimental durations. Soil pH decreased most in grassland, whereas boreal forest was not observed a decrease to N addition in soil acidification. Soil pH decreased linearly with N addition rates. Addition of urea and NH4NO3 contributed more to soil acidification than NH4-form fertilizer. When experimental duration was longer than 20 years, N addition effects on soil acidification diminished. Environmental factors such as initial soil pH, soil carbon and nitrogen content, precipitation, and temperature all influenced the responses of soil pH. Base cations of Ca2+, Mg2+ and K+ were critical important in buffering against N-induced soil acidification at the early stage. However, N addition has shifted global soils into the Al3+ buffering phase. Overall, this study indicates that acidification in global soils is very sensitive to N deposition, which is greatly modified by biotic and abiotic factors. Global soils are now at a buffering transition from base cations (Ca2+, Mg2+ and K+) to non-base cations (Mn2+ and Al3+). This calls our attention to care about the limitation of base cations and the toxic impact of non-base cations for terrestrial ecosystems with N deposition.

  2. Analysis of crude heparin by (1)H NMR, capillary electrophoresis, and strong-anion-exchange-HPLC for contamination by over sulfated chondroitin sulfate.

    PubMed

    Keire, David A; Trehy, Michael L; Reepmeyer, John C; Kolinski, Richard E; Ye, Wei; Dunn, Jamie; Westenberger, Benjamin J; Buhse, Lucinda F

    2010-03-11

    We previously published a strong-anion-exchange-high performance liquid chromatography (SAX-HPLC) method for the detection of the contaminant over sulfated chondroitin sulfate (OSCS) in heparin sodium active pharmaceutical ingredient (API). While APIs have been processed to remove impurities, crude heparins contain insoluble material, chondroitin sulfates, heparan sulfate, and proteins that may interfere with the recovery and measurement of OSCS. We examined 500MHz (1)H NMR, capillary electrophoresis (CE), and SAX-HPLC to quantify OSCS in crude heparin. Using our standard API protocol on OSCS spiked crude heparin samples; we observed a weight percent LOD and LOQ for the NMR approach of 0.1% and 0.3%, respectively, while the SAX-HPLC method gave values of 0.03% and 0.09%, respectively. CE data was not amenable to quantitative measurement of OSCS in crude heparin. We developed a modified HPLC sample preparation protocol using crude dissolved at the 100mg/mL level with a 2.5M NaCl solution. This SAX-HPLC approach gave a weight percent LOD of 0.02% and a LOQ of 0.07% and had better performance characteristics than that of the protocol used for APIs.

  3. Selective pressurized liquid extraction for multi-residue analysis of organochlorine pesticides in soil.

    PubMed

    Hussen, Ahmed; Westbom, Rikard; Megersa, Negussie; Mathiasson, Lennart; Björklund, Erland

    2007-06-08

    A selective pressurized liquid extraction (SPLE) procedure capable of performing simultaneous extraction and clean-up has been demonstrated for multi-residue analysis of organochlorine pesticides (OCPs) in soil. The final method was performed at 100 degrees C for 3 x 10 min using acetone/n-heptane (1:1, v/v). Florisil was placed inside the extraction cell downstream the sample to remove interfering compounds. Extraction of two soil samples by SPLE gave a recovery which was over 80% for beta-endosulfan, endosulfan sulfate, p,p'-DDT and p,p'-DDE compared to PLE with off-line clean-up. The same trend was observed when applying the SPLE method to a certified reference soil sample (CRM 811-050) containing 13 OCPs, where the SPLE method gave 80-90% recovery vis-à-vis the PLE method with off-line clean-up. Feasibility of the SPLE method was further demonstrated by applying it to five real soil samples collected in Ethiopia.

  4. Conceptual designs for in situ analysis of Mars soil

    NASA Technical Reports Server (NTRS)

    Mckay, C. P.; Zent, A. P.; Hartman, H.

    1991-01-01

    A goal of this research is to develop conceptual designs for instrumentation to perform in situ measurements of the Martian soil in order to determine the existence and nature of any reactive chemicals. Our approach involves assessment and critical review of the Viking biology results which indicated the presence of a soil oxidant, an investigation of the possible application of standard soil science techniques to the analysis of Martian soil, and a preliminary consideration of non-standard methods that may be necessary for use in the highly oxidizing Martian soil. Based on our preliminary analysis, we have developed strawman concepts for standard soil analysis on Mars, including pH, suitable for use on a Mars rover mission. In addition, we have devised a method for the determination of the possible strong oxidants on Mars.

  5. Acid-Sulfate Alteration at Gusev Crater and Across Mars: High-SiO2 Residues and Ferric Sulfate Precipitates

    NASA Technical Reports Server (NTRS)

    Morris, R. V.; Catalano, J. G.; Klingelhoefer, G.; Schroeder, C.; Gellert, R.; Clark, B. C.; Ming, D. W.; Yen, A. S.; Arvidson, R. E.; Cohen, B. A.; Fleischer, I.; McCoy, T. J.; Mittlefehldt, D. W.; Squyres, S. W.

    2017-01-01

    The Mars Exploration Rover Spirit ended its mission in Gusev crater on sol 2210 after it had become stuck in a deposit of fined-grained and sulfate rich soil with dust covered solar panels unfavorably pointed toward the sun. Final analysis of remaining data from Spirit's Moessbauer spectrometer (Fe redox and mineralogy) for sols 1529 through 2071 is now complete. We focus here on chemical (APXS) and MB data for targets having high-SiO2 or high-SO3 and process link the targets through mixing and geochemical modelling to an acid-sulfate system centered at Home Plate, which is considered to be a hydrovolcanic complex.

  6. Infrared Spectroscopic Analyses of Sulfate, Nitrate, and Carbonate-bearing Atacama Desert Soils: Analogs for the Interpretation of Infrared Spectra from the Martian Surface

    NASA Technical Reports Server (NTRS)

    Dalton, J. B.; Dalton, J. B.; Ewing, S. A.; Amundson, R.; McKay, C. P.

    2005-01-01

    The Atacama Desert of northern Chile is the driest desert on Earth, receiving only a few mm of rain per decade. The Mars climate may, in the past, have been punctuated by short-lived episodes of aqueous activity. The paleo-Martian environment may have had aqueous conditions similar to the current conditions that exist in the Atacama, and Mars soils may have formed with soil chemistry and mineralogy similar to those found in the Atacama. Remote and in-situ analysis of the Martian surface using infrared technology has a long heritage. Future investigations of the subsurface mineralogy are likely to build upon this heritage, and will benefit from real life lessons to be learned from terrestrial analog studies. To that end, preliminary results from a near- and mid-infrared spectroscopic study of Atacama soil profiled at a range of depths are presented.

  7. Analysis of reversibility and reaction products of glyoxal uptake onto ammonium sulfate aerosol

    NASA Astrophysics Data System (ADS)

    Galloway, M. M.; Chhabra, P. S.; Chan, A. W.; Surratt, J. D.; Kwan, A. J.; Wennberg, P. O.; Flagan, R. C.; Seinfeld, J. H.; Keutsch, F. N.

    2009-04-01

    Glyoxal, the smallest alpha-dicarbonyl, is an oxidation product of both biogenic and anthropogenic volatile organic compounds (Fu et al. JGR 113, D15303, 2008). Despite its low molecular weight, its role in secondary organic aerosol (SOA) formation has gained interest and a recent study suggested that it accounts for more than 15% of SOA in Mexico City (Volkamer et al. GRL 34, L19807, 2007). Despite numerous previous studies, questions remain regarding the processes controlling glyoxal uptake onto aerosol, including the role of acid catalysis, degree of reversibility, and identity of aerosol phase reaction products. We present results of chamber aerosol studies (Galloway et al. ACPD 8, 20799, 2008) and laboratory studies of bulk samples aimed at improving the understanding of these processes, in particular formation of oligomers and organosulfates of glyoxal, as well as the formation of imidazoles (carbon-nitrogen containing heterocyclic aromatic compounds) under dark and irradiated conditions. The relevance of these classes of reaction products extends beyond glyoxal, as evidence of oligomers and organosulfates other than those of glyoxal have been found in ambient aerosol (Surratt et al. JPCA 112, 8345, 2008; Denkenberger et al. Environ. Sci. Technol. 41, 5439, 2007). Experiments in which a chamber air mass was diluted after equilibration of glyoxal uptake onto ammonium sulfate seed aerosol (relative humidity 60% and glyoxal mixing ratios of 25-200 ppbv) shows that under these conditions uptake is reversible. The most important condensed phase products are hydrated oligomers of glyoxal, which are also formed reversibly under these conditions. Our studies show that organosulfates were not formed under dark conditions for neutral or acidified aerosol; similarly, Minerath et al. have recently shown that formation of a different class of organosulfates (alkyl sulfates) also proceeds very slowly even under acidic conditions (Environ. Sci. Technol. 42, 4410, 2008). The

  8. Analysis of ammonium sulfate circulation tank failure -- Possible causes and their remediation

    SciTech Connect

    O`Hearn, R.J.

    1997-12-31

    Acme steel manufactures a liquid solution of ammonium sulphate by scrubbing the coke oven gas with a dilute solution of sulphuric acid. When the bath reaches a predetermined specific gravity, it is isolated from the system, neutralized with aqua ammonia, pumped to the shipping tanks, re-charged with water and acid, then placed back in service. To improve the ammonia removal efficiency, three circulation tanks are used in this system. In June 1996, the volume of two of the sulfate solution tanks in the ammonia removal plant were increased by two different pressure events. The first tank was damaged by pressure that was not relieved due to a plugged vent line. The second tank was damaged by a pressure event generated during the process of making ammonium sulfate. This paper will discuss the cause of the second tank`s failure, and the design solution to restart the operation of the plant.

  9. Structural analysis of sulfated fucan from Saccharina japonica by electrospray ionization tandem mass spectrometry.

    PubMed

    Jin, Weihua; Guo, Zhimou; Wang, Jing; Zhang, Wenjing; Zhang, Quanbin

    2013-03-22

    Desulfation of a fucoidan from Saccharina japonica by treatment with DMSO-MeOH resulted in partial degradation of polymeric molecules by methanolysis giving rise to a mixture of neutral, monosulfated, and disulfated fucooligosaccharides in the form of methyl glycosides. These oligomeric fragments were characterized by ESI-MS and ESI-CID-MS/MS. It was found that oligosaccharide structures coincided with the polysaccharide backbone built up mainly of (1→3)-linked fucose residues sulfated at positions 4 and 2.

  10. Statistical uncertainty analysis of radon transport in nonisothermal, unsaturated soils

    SciTech Connect

    Holford, D.J.; Owczarski, P.C.; Gee, G.W.; Freeman, H.D.

    1990-10-01

    To accurately predict radon fluxes soils to the atmosphere, we must know more than the radium content of the soil. Radon flux from soil is affected not only by soil properties, but also by meteorological factors such as air pressure and temperature changes at the soil surface, as well as the infiltration of rainwater. Natural variations in meteorological factors and soil properties contribute to uncertainty in subsurface model predictions of radon flux, which, when coupled with a building transport model, will also add uncertainty to predictions of radon concentrations in homes. A statistical uncertainty analysis using our Rn3D finite-element numerical model was conducted to assess the relative importance of these meteorological factors and the soil properties affecting radon transport. 10 refs., 10 figs., 3 tabs.

  11. Database and data analysis application for structural characterization of gangliosides and sulfated glycosphingolipids by negative ion mass spectrometry.

    PubMed

    Rožman, Marko; Fabris, Dragana; Mrla, Tomislav; Vukelić, Zeljka

    2014-12-05

    Gangliosides and sulfated glycosphingolipids, as building and functional components of animal cell membranes, participate in cell-to-cell interactions and signaling, but also in changes of cell architecture due to different pathophysiological events. In order to enable higher throughput and to facilitate structural characterization of gangliosides/sulfo-glycosphingolipids (GSL) and their neutral GSL counterparts by negative ion mass spectrometry (MS) and tandem MS techniques, a database and data analysis application have been developed. In silico developed glycosphingolipid database considers a high diversity of ceramide compositions, several sialic acid types (N-acetylneuraminic acid, N-glycolylneuraminic acid and 2-keto-3-deoxynononic acid) as well as possible additional substitutions/modifications of glycosphingolipids, such as O-acetylation, de-N-acetylation, fucosylation, glucuronosylation, sulfation, attachment of repeating terminal hexose-N-acetylhexosamine- (Hex-HexNAc-)1-6 extension, and possible lactone forms. Data analysis application, named GSL-finder, enables correlation of negative ion MS and/or low-energy tandem MS spectra with the database structures. The GSL-database construction and the GSL-finder application searching rules are explained. Validation conducted on GD1a fraction as well as on complex mixtures of native gangliosides isolated from different mammalian brain tissues (human fetal and adult brain, and calf brain tissue) demonstrated agreement with previous studies. Plain, fast, and automated routine for structural characterization of gangliosides/sulfated glycosphingolipids and their neutral GSL counterparts described here could facilitate and improve mass spectrometric analysis of complex glycosphingolipid mixtures originating from variety of normal and pathological biomaterial, where it is known that distinctive changes in glycosphingolipid composition occur.

  12. [Analysis of XRD spectral characteristics of soil clay mineral in two typical cultivated soils].

    PubMed

    Zhang, Zhi-Dan; Luo, Xiang-Li; Jiang, Hai-Chao; Li, Qiao; Shen, Cong-Ying; Liu, Hang; Zhou, Ya-Juan; Zhao, Lan-Po; Wang, Ji-Hong

    2014-07-01

    The present paper took black soil and chernozem, the typical cultivated soil in major grain producing area of Northeast, as the study object, and determinated the soil particle composition characteristics of two cultivated soils under the same climate and location. Then XRD was used to study the composition and difference of clay mineral in two kinds of soil and the evolutionary mechanism was explored. The results showed that the two kinds of soil particles were composed mainly of the sand, followed by clay and silt. When the particle accumulation rate reached 50%, the central particle size was in the 15-130 microm interval. Except for black soil profile of Shengli Xiang, the content of clay showed converse sequence to the central particle in two soils. Clay accumulated under upper layer (18.82%) in black soil profile while under caliche layer (17.41%) in chernozem profile. Clay content was the least in parent material horizon except in black profile of Quanyanling. Analysis of clay XRD atlas showed that the difference lied in not only the strength of diffraction peak, but also in the mineral composition. The main contents of black soil and chernozem were both 2 : 1 clay, the composition of black soil was smectite/illite mixed layer-illite-vermiculite and that of chernozem was S/I mixture-illite-montmorillonite, and both of them contained little kaolinite, chlorite, quartz and other primary mineral. This paper used XRD to determine the characteristics of clay minerals comprehensively, and analyzed two kinds of typical cultivated soil comparatively, and it was a new perspective of soil minerals study.

  13. Diethyl sulfate

    Integrated Risk Information System (IRIS)

    Diethyl sulfate ; CASRN 64 - 67 - 5 Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard Assessments for Noncarcinogenic Ef

  14. Barium Sulfate

    MedlinePlus

    ... uses a computer to put together x-ray images to create cross-sectional or three dimensional pictures of the inside of the body). Barium sulfate is in a class of medications called radiopaque contrast media. It works by coating the esophagus, stomach, or ...

  15. Dimethyl sulfate

    Integrated Risk Information System (IRIS)

    Dimethyl sulfate ; CASRN 77 - 78 - 1 Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard Assessments for Noncarcinogenic E

  16. Sensitivity analysis and calibration of a soil carbon model (SoilGen2) in two contrasting loess forest soils

    NASA Astrophysics Data System (ADS)

    Yu, Y. Y.; Finke, P. A.; Wu, H. B.; Guo, Z. T.

    2013-01-01

    To accurately estimate past terrestrial carbon pools is the key to understanding the global carbon cycle and its relationship with the climate system. SoilGen2 is a useful tool to obtain aspects of soil properties (including carbon content) by simulating soil formation processes; thus it offers an opportunity for both past soil carbon pool reconstruction and future carbon pool prediction. In order to apply it to various environmental conditions, parameters related to carbon cycle process in SoilGen2 are calibrated based on six soil pedons from two typical loess deposition regions (Belgium and China). Sensitivity analysis using the Morris method shows that decomposition rate of humus (kHUM), fraction of incoming plant material as leaf litter (frecto) and decomposition rate of resistant plant material (kRPM) are the three most sensitive parameters that would cause the greatest uncertainty in simulated change of soil organic carbon in both regions. According to the principle of minimizing the difference between simulated and measured organic carbon by comparing quality indices, the suited values of kHUM, (frecto and kRPM in the model are deduced step by step and validated for independent soil pedons. The difference of calibrated parameters between Belgium and China may be attributed to their different vegetation types and climate conditions. This calibrated model allows more accurate simulation of carbon change in the whole pedon and has potential for future modeling of carbon cycle over long timescales.

  17. Comparative Analysis of Methane-Oxidizing Archaea and Sulfate-Reducing Bacteria in Anoxic Marine Sediments

    PubMed Central

    Orphan, V. J.; Hinrichs, K.-U.; Ussler, W.; Paull, C. K.; Taylor, L. T.; Sylva, S. P.; Hayes, J. M.; Delong, E. F.

    2001-01-01

    The oxidation of methane in anoxic marine sediments is thought to be mediated by a consortium of methane-consuming archaea and sulfate-reducing bacteria. In this study, we compared results of rRNA gene (rDNA) surveys and lipid analyses of archaea and bacteria associated with methane seep sediments from several different sites on the Californian continental margin. Two distinct archaeal lineages (ANME-1 and ANME-2), peripherally related to the order Methanosarcinales, were consistently associated with methane seep marine sediments. The same sediments contained abundant 13C-depleted archaeal lipids, indicating that one or both of these archaeal groups are members of anaerobic methane-oxidizing consortia. 13C-depleted lipids and the signature 16S rDNAs for these archaeal groups were absent in nearby control sediments. Concurrent surveys of bacterial rDNAs revealed a predominance of δ-proteobacteria, in particular, close relatives of Desulfosarcina variabilis. Biomarker analyses of the same sediments showed bacterial fatty acids with strong 13C depletion that are likely products of these sulfate-reducing bacteria. Consistent with these observations, whole-cell fluorescent in situ hybridization revealed aggregations of ANME-2 archaea and sulfate-reducing Desulfosarcina and Desulfococcus species. Additionally, the presence of abundant 13C-depleted ether lipids, presumed to be of bacterial origin but unrelated to ether lipids of members of the order Desulfosarcinales, suggests the participation of additional bacterial groups in the methane-oxidizing process. Although the Desulfosarcinales and ANME-2 consortia appear to participate in the anaerobic oxidation of methane in marine sediments, our data suggest that other bacteria and archaea are also involved in methane oxidation in these environments. PMID:11282650

  18. Sterile soil from Antarctica: organic analysis.

    PubMed

    Horowitz, N H; Bauman, A J; Cameron, R E; Geiger, P J; Hubbard, J S; Shulman, G P; Simmonds, P G; Westberg, K

    1969-05-30

    Soils from the dry-valley region of Antarctica can be sterile by the usual microbiological criteria and yet contain significant amounts of organic carbon. Examination of one such soil shows that the organic material is finely divided anthracite coal. These findings have significant implications for the biological exploration of Mars.

  19. Prompt Gamma Ray Analysis of Soil Samples

    SciTech Connect

    Naqvi, A.A.; Khiari, F.Z.; Haseeb, S.M.A.; Hussein, Tanvir; Khateeb-ur-Rehman; Isab, A.H.

    2015-07-01

    Neutron moderation effects were measured in bulk soil samples through prompt gamma ray measurements from water and benzene contaminated soil samples using 14 MeV neutron inelastic scattering. The prompt gamma rays were measured using a cylindrical 76 mm x 76 mm (diameter x height) LaBr{sub 3}:Ce detector. Since neutron moderation effects strongly depend upon hydrogen concentration of the sample, for comparison purposes, moderation effects were studied from samples containing different hydrogen concentrations. The soil samples with different hydrogen concentration were prepared by mixing soil with water as well as benzene in different weight proportions. Then, the effects of increasing water and benzene concentrations on the yields of hydrogen, carbon and silicon prompt gamma rays were measured. Moderation effects are more pronounced in soil samples mixed with water as compared to those from soil samples mixed with benzene. This is due to the fact that benzene contaminated soil samples have about 30% less hydrogen concentration by weight than the water contaminated soil samples. Results of the study will be presented. (authors)

  20. Analysis of large soil samples for actinides

    DOEpatents

    Maxwell, III; Sherrod L.

    2009-03-24

    A method of analyzing relatively large soil samples for actinides by employing a separation process that includes cerium fluoride precipitation for removing the soil matrix and precipitates plutonium, americium, and curium with cerium and hydrofluoric acid followed by separating these actinides using chromatography cartridges.

  1. Soil Carbon: Compositional and Isotopic Analysis

    SciTech Connect

    Moran, James J.; Alexander, M. L.; Laskin, Alexander

    2016-11-01

    This is a short chapter to be included in the next edition of the Encyclopedia of Soil Science. The work here describes techniques being developed at PNNL for investigating organic carbon in soils. Techniques discussed include: laser ablation isotope ratio mass spectrometry, laser ablation aerosol mass spectrometry, and nanospray desorption electrospray ionization mass spectrometry.

  2. Multi-Elemental Nuclear Analysis of soil reference material

    NASA Astrophysics Data System (ADS)

    Metairon, S.; Zamboni, C. B.; Medeiros, I. M. M. Amaral; Menezes, M. À. B. C.

    2011-08-01

    The elements concentration in the soil reference material (IAEA/SOIL-7) was obtained using the parametric Neutron Activation Analysis technique in the IEA-R1 nuclear reactor at IPEN (CNEN-SP). The results obtained were in good agreement with the respective nominal values from this reference material suggesting the viability of using this parametric procedure for environmental investigations.

  3. Investigation of Biological Soil Crusts Metabolic Webs Using Exometabolomic Analysis

    NASA Astrophysics Data System (ADS)

    Northen, T.; Karaoz, U.; Jenkins, S.; Lau, R.; Bowen, B.; Cadillo-Quiroz, H.; Garcia-Pichel, F.; Brodie, E.; Richard, B.

    2014-12-01

    Desert biological soil crusts are simple cyanobacteria-dominated surface soil microbial communities found in areas with infrequent wetting, often extreme temperatures, low coverage of vascular plants and constitute the world's largest biofilm. They exist for extended periods in a desiccated dormant state, yet rapidly re-boot metabolism within minutes of wetting. These soil microbial communities are highly dependent on filamentous cyanobacteria such as Microcoleus vaginatusto stabilize the soil and to act as primary producers for the community through the release carbon sources to feed a diversity of heterotrophs. Exometabolomic analysis was performed using liquid chromatography coupled to tandem mass spectrometry on biological soil crust pore water and spent media of key soil bacterial isolates. Comparison of spent vs. fresh media was used to determine uptake or release of metabolites by specific microbes. To link pore water experiments with isolate studies, metabolite extracts of authentic soil were used as supplements for isolate exometabolomic profiling. Our soil metabolomics methods detected hundreds of metabolites from soils including may novel compounds. Only a small set of which being targeted by all isolates. Beyond these few metabolites, the individual bacteria examined showed specialization towards specific metabolites. Surprisingly, many of the most abundant oligosaccharides and other metabolites were ignored by these isolates. The observed specialization of biological soil crust bacteria may play a significant role in determining community structure.

  4. Analysis of remotely sensed data for detecting soil limitations

    NASA Technical Reports Server (NTRS)

    Benson, L. A.; Frazee, C. J.; Waltz, F. A.

    1973-01-01

    During 1971 and 1972 a detailed study was conducted on a fallow field in the proposed Oahe Irrigation Project to determine the relationship between the tonal variation observed on aerial photographs and the properties of eroded soil. Correlation and regression analysis of digitized, multiemulsion, color infrared film (2443) data and detailed field data revealed a highly significant correlation between film transmittance and several soil properties indicative of the erosion limitation. Computer classification of the multiemulsion film data resulted in maps portraying the eroded soil and the normal soil. Both correlation and computer classification results were best using the reflectance data from the red spectral band. The results showed film transmittance was actually measuring the reflectivity of the soil surface which was increased by the incorporation of the light colored, calcareous parent material exposed by erosion or tillage on soils with thin surface horizons.

  5. Metagenomic analysis of microbial community in uranium-contaminated soil.

    PubMed

    Yan, Xun; Luo, Xuegang; Zhao, Min

    2016-01-01

    Uranium tailing is a serious pollution challenge for the environment. Based on metagenomic sequencing analysis, we explored the functional and structural diversity of the microbial community in six soil samples taken at different soil depths from uranium-contaminated and uncontaminated areas. Kyoto Encyclopedia of Genes and Genomes Orthology (KO) groups were obtained using a Basic Local Alignment Search Tool search based on the universal protein resource database. The KO-pathway network was then constructed using the selected KOs. Finally, alpha and beta diversity analyses were performed to explore the differences in soil bacterial diversity between the radioactive soil and uncontaminated soil. In total, 30-68 million high-quality reads were obtained. Sequence assembly yielded 286,615 contigs; and these contigs mostly annotated to 1699 KOs. The KO distributions were similar among the six soil samples. Moreover, the proportion of the metabolism of other amino acids (e.g., beta-alanine, taurine, and hypotaurine) and signal transduction was significantly lower in radioactive soil than in uncontaminated soil, whereas the proportion of membrane transport and carbohydrate metabolism was higher. Additionally, KOs were mostly enriched in ATP-binding cassette transporters and two-component systems. According to diversity analyses, Actinobacteria and Proteobacteria were the dominant phyla in radioactive and uncontaminated soil, and Robiginitalea, Microlunatus, and Alicyclobacillus were the dominant genera in radioactive soil. Taken together, these results demonstrate that soil microbial community, structure, and functions show significant changes in uranium-contaminated soil. The dominant categories such as Actinobacteria and Proteobacteria may be applied in environmental governance for uranium-contaminated soil in southern China.

  6. Analysis of soils contaminated with petroleum constituents

    SciTech Connect

    O'Shay, T.A. ); Hoddinott, K. )

    1994-01-01

    This symposium was held in Atlanta, Georgia on June 24, 1993. The purpose of the symposium was to provide a forum for exchange of information on petroleum contaminated soils. When spilled on the ground, petroleum products can cause massive problems in the environment. In this Special Technical Publication (STP), papers were selected in two categories; the analytical procedures for soil contaminated with petroleum hydrocarbons and the behavior of hydrocarbon contaminated soils. Individual papers have been processed separately for inclusion in the appropriate data bases.

  7. Sensitivity analysis and calibration of a soil carbon model (SoilGen2) in two contrasting loess forest soils

    NASA Astrophysics Data System (ADS)

    Yu, Y. Y.; Finke, P. A.; Wu, H. B.; Guo, Z. T.

    2012-07-01

    To accurately estimate past terrestrial carbon pools is the key to understand the global carbon cycle and its relationship with the climate system. SoilGen2 is a useful tool to obtain aspects of soil properties (including carbon content) by simulating soil formation processes; thus it offers an opportunity for past soil carbon pool reconstruction. In order to apply it to various environmental conditions, parameters related to carbon cycle process in SoilGen2 are calibrated based on 6 soil pedons from two typical loess deposition regions (Belgium and China). Sensitivity analysis using Morris' method shows that decomposition rate of humus (kHUM), fraction of incoming plant material as leaf litter (frecto) and decomposition rate of resistant plant material (kRPM) are 3 most sensitive parameters that would cause the greatest uncertainty in simulated change of soil organic carbon in both regions. According to the principle of minimizing the difference between simulated and measured organic carbon by comparing quality indices, the suited values of kHUM, frecto and kRPM in the model are deduced step by step. The difference of calibrated parameters between Belgium and China may be attributed to their different vegetation types and climate conditions. This calibrated model is improved for better simulation of carbon change in the whole pedon and has potential for future modeling of carbon cycle in paleosols.

  8. [Effectiveness of ferrous sulfate supplementation in the prevention of anemia in children: a systematic literature review and meta-analysis].

    PubMed

    Cembranel, Francieli; Dallazen, Camila; González-Chica, David Alejandro

    2013-09-01

    This was a systematic review and meta-analysis of studies evaluating the effectiveness of ferrous sulfate supplementation in the prevention of anemia in children under five. The database search included PubMed, Scopus, LILACS, and SciELO. Articles published between 1980 and 2011 in Spanish, English, or Portuguese were included, using the keywords child, preschool, infant, anemia, prevention, and iron supplementation. The authors selected 13 studies, which showed that regardless of dose and duration of supplementation, daily regimen was more consistently related to improvement in hemoglobin levels (pooled effect 0.56mg/dL, 95%CI: 0.31; 0.81, p < 0.001) as compared to weekly intervention (pooled effect 0.28mg/dL, 95%CI: -0.22; 0.78, p = 0.273). Iron supplementation was not associated with decreased prevalence of anemia, even with daily doses, and administration with other micronutrients did not bring additional benefits compared to the exclusive administration of iron supplement. Daily supplementation of ferrous sulfate was more effective than weekly doses in improving hemoglobin levels.

  9. Quantitative proton nuclear magnetic resonance for the structural and quantitative analysis of atropine sulfate.

    PubMed

    Shen, Shi; Yao, Jing; Shi, Yaqin

    2014-02-01

    This study assessed a general method of quantitative nuclear magnetic resonance (qNMR) for the calibration of atropine sulfate (Active Pharmaceutical Ingredient, API) as reference standard. The spectra were acquired in D2O using maleic acid as the internal standard. Conformational behaviors of tropane ring were observed and studied by means of NMR and ROESY experiments at different temperature, which showed that the azine methyl group was at equilibrium for axial and equatorial conformations at room temperature. Signal delay and monitor signals of qNMR experimentation were optimized for quantification. The study reported here validated the method's linearity, range, limit of quantification, stability and precision. The results were consistent with the results obtained from mass balance approach.

  10. Bioremediation of chromate: thermodynamic analysis of the effects of Cr(VI) on sulfate-reducing bacteria.

    PubMed

    Chardin, B; Dolla, A; Chaspoul, F; Fardeau, M L; Gallice, P; Bruschi, M

    2002-11-01

    Developing new bioremediation processes for soils and effluents polluted by Cr(VI) requires the selection of the most efficient and the most heavy-metal-resistant bacteria. The effects of Cr(VI) on bioenergetic metabolism in two sulfate-reducing bacteria (SRB), Desulfovibrio vulgaris Hildenborough and Desulfomicrobium norvegicum, were monitored using isothermal microcalorimetry. The complete reduction of Cr(VI) to Cr(III) was studied by spectrophotometry and by speciation using a combination of high-performance liquid chromatography and inductively coupled plasma-mass spectrometry. Results revealed that Cr(VI) induces an inhibition of growth with concomitant production of energy, which can be compared to the reaction of the bacteria to a stress such as oxidative stress. Moreover, the sensitivity of bacteria towards this metal is as a characteristic of the strain, which leads to differences in the kinetics of Cr(VI) reduction. The study by microcalorimetry of heavy metal effects on SRB bioenergetic metabolism thus appears an appropriate tool to identify better strains to be used for industrial bioremediation process development.

  11. Sulfates on Mars: Indicators of Aqueous Processes

    NASA Technical Reports Server (NTRS)

    Bishop, Janice L.; Lane, Melissa D.; Dyar, M. Darby; Brown, Adrian J.

    2006-01-01

    Recent analyses by MER instruments at Meridiani Planum and Gusev crater and the OMEGA instrument on Mars Express have provided detailed information about the presence of sulfates on Mars [1,2,3]. We are evaluating these recent data in an integrated multi-disciplinary study of visible-near-infrared, mid-IR and Mossbauer spectra of several sulfate minerals and sulfate-rich analog sites. Our analyses suggest that hydrated iron sulfates may account for features observed in Mossbauer and mid-IR spectra of Martian soils [4]. The sulfate minerals kieserite, gypsum and other hydrated sulfates have been identified in OMEGA spectra in the layered terrains in Valles Marineris and Terra Meridiani [2]. These recent discoveries emphasize the importance of studying sulfate minerals as tracers of aqueous processes. The sulfate-rich rock outcrops observed in Meridiani Planum may have formed in an acidic environment similar to acid rock drainage environments on Earth [5]. Because microorganisms typically are involved in the oxidation of sulfides to sulfates in terrestrial sites, sulfate-rich rock outcrops on Mars may be a good location to search for evidence of past life on that planet. Whether or not life evolved on Mars, following the trail of sulfate minerals will lead to a better understanding of aqueous processes and chemical weathering.

  12. The impact of soil compaction on runoff - a meta analysis

    NASA Astrophysics Data System (ADS)

    Rogger, Magdalena; Blöschl, Günter

    2016-04-01

    Soil compaction caused by intensive agricultural practices is known to influence runoff processes at the local scale and is often speculated to have an impact on flood events at much larger scales. Due to the complex and diverse mechanisms related to soil compaction, the key processes influencing runoff at different scales are still poorly understood. The impacts of soil compaction are, however, not only investigated by hydrologists, but also by agricultural scientists since changes in the soil structure and water availability have a direct impact on agricultural yield. Results from these studies are also of interest to hydrologists. This study presents a meta analysis of such agricultural studies with the aim to analyse and bring together the results related to runoff processes. The study identifies the most important parameters used to describe soil compaction effects and compares the observed impacts under different climatic and soil conditions. The specific type of agricultural practice causing the soil compaction is also taken into account. In a further step the results of this study shall be used to derive a toy model for scenario analysis in order to identify the potential impacts of soil compaction on runoff processes at larger scales then the plot scale.

  13. Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park.

    PubMed

    Hamamura, Natsuko; Olson, Sarah H; Ward, David M; Inskeep, William P

    2005-10-01

    In this paper we describe the bacterial communities associated with natural hydrocarbon seeps in nonthermal soils at Rainbow Springs, Yellowstone National Park. Soil chemical analysis revealed high sulfate concentrations and low pH values (pH 2.8 to 3.8), which are characteristic of acid-sulfate geothermal activity. The hydrocarbon composition of the seep soils consisted almost entirely of saturated, acyclic alkanes (e.g., n-alkanes with chain lengths of C15 to C30, as well as branched alkanes, predominately pristane and phytane). Bacterial populations present in the seep soils were phylogenetically characterized by 16S rRNA gene clone library analysis. The majority of the sequences recovered (>75%) were related to sequences of heterotrophic acidophilic bacteria, including Acidisphaera spp. and Acidiphilium spp. of the alpha-Proteobacteria. Clones related to the iron- and sulfur-oxidizing chemolithotroph Acidithiobacillus spp. were also recovered from one of the seep soils. Hydrocarbon-amended soil-sand mixtures were established to examine [14C]hexadecane mineralization and corresponding changes in the bacterial populations using denaturing gradient gel electrophoresis (DGGE) of 16S rRNA gene fragments. Approximately 50% of the [14C]hexadecane added was recovered as 14CO2 during an 80-day incubation, and this was accompanied by detection of heterotrophic acidophile-related sequences as dominant DGGE bands. An alkane-degrading isolate was cultivated, whose 16S rRNA gene sequence was identical to the sequence of a dominant DGGE band in the soil-sand mixture, as well as the clone sequence recovered most frequently from the original soil. This and the presence of an alkB gene homolog in this isolate confirmed the alkane degradation capability of one population indigenous to acidic hydrocarbon seep soils.

  14. Microarray and Functional Gene Analyses of Sulfate-Reducing Prokaryotes in Low-Sulfate, Acidic Fens Reveal Cooccurrence of Recognized Genera and Novel Lineages

    PubMed Central

    Loy, Alexander; Küsel, Kirsten; Lehner, Angelika; Drake, Harold L.; Wagner, Michael

    2004-01-01

    Low-sulfate, acidic (approximately pH 4) fens in the Lehstenbach catchment in the Fichtelgebirge mountains in Germany are unusual habitats for sulfate-reducing prokaryotes (SRPs) that have been postulated to facilitate the retention of sulfur and protons in these ecosystems. Despite the low in situ availability of sulfate (concentration in the soil solution, 20 to 200 μM) and the acidic conditions (soil and soil solution pHs, approximately 4 and 5, respectively), the upper peat layers of the soils from two fens (Schlöppnerbrunnen I and II) of this catchment displayed significant sulfate-reducing capacities. 16S rRNA gene-based oligonucleotide microarray analyses revealed stable diversity patterns for recognized SRPs in the upper 30 cm of both fens. Members of the family “Syntrophobacteraceae” were detected in both fens, while signals specific for the genus Desulfomonile were observed only in soils from Schlöppnerbrunnen I. These results were confirmed and extended by comparative analyses of environmentally retrieved 16S rRNA and dissimilatory (bi)sulfite reductase (dsrAB) gene sequences; dsrAB sequences from Desulfobacca-like SRPs, which were not identified by microarray analysis, were obtained from both fens. Hypotheses concerning the ecophysiological role of these three SRP groups in the fens were formulated based on the known physiological properties of their cultured relatives. In addition to these recognized SRP lineages, six novel dsrAB types that were phylogenetically unrelated to all known SRPs were detected in the fens. These dsrAB sequences had no features indicative of pseudogenes and likely represent novel, deeply branching, sulfate- or sulfite-reducing prokaryotes that are specialized colonists of low-sulfate habitats. PMID:15574893

  15. A modified sulfate process to lunar oxygen

    NASA Technical Reports Server (NTRS)

    Sullivan, Thomas A.

    1992-01-01

    A modified sulfate process which produces oxygen from iron oxide-bearing minerals in lunar soil is under development. Reaction rates of ilmenite in varying strength sulfuric acid have been determined. Quantitative conversion of ilmenite to ferrous sulfate was observed over a range of temperatures and concentrations. Data has also been developed on the calcination of by-product sulfates. System engineering for overall operability and simplicity has begun, suggesting that a process separating the digestion and sulfate dissolution steps may offer an optimum process.

  16. Spectral reflectance of surface soils - A statistical analysis

    NASA Technical Reports Server (NTRS)

    Crouse, K. R.; Henninger, D. L.; Thompson, D. R.

    1983-01-01

    The relationship of the physical and chemical properties of soils to their spectral reflectance as measured at six wavebands of Thematic Mapper (TM) aboard NASA's Landsat-4 satellite was examined. The results of performing regressions of over 20 soil properties on the six TM bands indicated that organic matter, water, clay, cation exchange capacity, and calcium were the properties most readily predicted from TM data. The middle infrared bands, bands 5 and 7, were the best bands for predicting soil properties, and the near infrared band, band 4, was nearly as good. Clustering 234 soil samples on the TM bands and characterizing the clusters on the basis of soil properties revealed several clear relationships between properties and reflectance. Discriminant analysis found organic matter, fine sand, base saturation, sand, extractable acidity, and water to be significant in discriminating among clusters.

  17. Bornean orangutan geophagy: analysis of ingested and control soils.

    PubMed

    Mahaney, William C; Hancock, Ronald G V; Aufreiter, Susan; Milner, Michael W; Voros, Joan

    2016-02-01

    Geophagy among orangutans is the most poorly documented in contrast to the knowledge of soil-eating practices of other great ape species. Observations of soil consumption by orangutans in the Sungai Wain Forest Preserve (Wanariset) of Borneo are presented, along with physico-mineral-chemical analyses of the ingested soil in an effort to understand what might stimulate the activity. The consumed soils are: light colored, not excessively weathered by normal standards, higher in the clay size fraction relative to controls, and are comprised of a mix of clay minerals without any specificity of 1:1, 2:1 and/or 2:1:1 (Si:Al) species. The geophagic soils contain chlorides below detection limits, effectively eliminating salt as a stimulus. Soil chemical and geochemical analyses confirm that orangutans prefer soils with pH levels near or above 4.0, while controls are consistently lower (pH = 3.5-4.0), a considerable difference in acidity for at least four out of six soils consumed. Geochemical analysis shows Al, Fe and K are high in the consumed vs control samples; higher Al follows from higher clay percentages in the consumed earth. Iron and K may play physiological roles, but Fe is mostly in the ferrous form (Fe(+2)) and may not be readily taken up by the animals. The preferential choice of consumed samples, with pH above 4.0 and higher clay contents, may promote a more beneficial intestinal environment.

  18. Pyrosequencing Based Microbial Community Analysis of Stabilized Mine Soils

    NASA Astrophysics Data System (ADS)

    Park, J. E.; Lee, B. T.; Son, A.

    2015-12-01

    Heavy metals leached from exhausted mines have been causing severe environmental problems in nearby soils and groundwater. Environmental mitigation was performed based on the heavy metal stabilization using Calcite and steel slag in Korea. Since the soil stabilization only temporarily immobilizes the contaminants to soil matrix, the potential risk of re-leaching heavy metal still exists. Therefore the follow-up management of stabilized soils and the corresponding evaluation methods are required to avoid the consequent contamination from the stabilized soils. In this study, microbial community analysis using pyrosequencing was performed for assessing the potential leaching of the stabilized soils. As a result of rarefaction curve and Chao1 and Shannon indices, the stabilized soil has shown lower richness and diversity as compared to non-contaminated negative control. At the phyla level, as the degree of contamination increases, most of phyla decreased with only exception of increased proteobacteria. Among proteobacteria, gamma-proteobacteria increased against the heavy metal contamination. At the species level, Methylobacter tundripaludum of gamma-proteobacteria showed the highest relative portion of microbial community, indicating that methanotrophs may play an important role in either solubilization or immobilization of heavy metals in stabilized soils.

  19. Sulfation of von Willebrand factor

    SciTech Connect

    Carew, J.A.; Browning, P.J.; Lynch, D.C. )

    1990-12-15

    von Willebrand factor (vWF) is a multimeric adhesive glycoprotein essential for normal hemostasis. We have discovered that cultured human umbilical vein endothelial cells incorporate inorganic sulfate into vWF. Following immunoisolation and analysis by polyacrylamide or agarose gel electrophoresis, metabolically labeled vWF was found to have incorporated (35S)-sulfate into all secreted multimer species. The time course of incorporation shows that sulfation occurs late in the biosynthesis of vWF, near the point at which multimerization occurs. Quantitative analysis suggests the presence, on average, of one molecule of sulfate per mature vWF subunit. Virtually all the detectable sulfate is released from the mature vWF subunit by treatment with endoglycosidases that remove asparagine-linked carbohydrates. Sulfated carbohydrate was localized first to the N-terminal half of the mature subunit (amino acids 1 through 1,365) by partial proteolytic digestion with protease V8; and subsequently to a smaller fragment within this region (amino acids 273 through 511) by sequential digestions with protease V8 and trypsin. Thus, the carbohydrate at asparagine 384 and/or 468 appears to be the site of sulfate modification. Sodium chlorate, an inhibitor of adenosine triphosphate-sulfurylase, blocks sulfation of vWF without affecting either the ability of vWF to assemble into high molecular weight multimers or the ability of vWF multimers to enter Weible-Palade bodies. The stability of vWF multimers in the presence of an endothelial cell monolayer also was unaffected by the sulfation state. Additionally, we have found that the cleaved propeptide of vWF is sulfated on asparagine-linked carbohydrate.

  20. Spectral study of interaction between chondroitin sulfate and nanoparticles and its application in quantitative analysis

    NASA Astrophysics Data System (ADS)

    Ma, Yi; Wei, Maojie; Zhang, Xiao; Zhao, Ting; Liu, Xiumei; Zhou, Guanglian

    2016-01-01

    In this work, the interaction between chondroitin sulfate (CS) and gold nanoparticles (GNPs) and silver nanoparticles (SNPs) was characterized for the first time. Plasma resonance scattering (PRS) and plasma resonance absorption (PRA) were used to investigate the characteristics of their spectrum. The results suggested that the CS with negative charge could interact with metal nanoparticles with negative charge and the adsorption of CS on the surface of SNPs was more regular than that of GNPs. The resonance scattering spectra also further confirmed the interaction between CS and SNPs. A new method for detection of CS based on the interaction was developed. CS concentrations in the range of 0.02-3.5 μg/mL were proportional to the decreases of absorbance of SNPs. Compared with other reported methods, the proposed method is simple and workable without complex process, high consumption and expensive equipments. The developed method was applied to the determination of the CS contents from different biological origins and the results were compared with those obtained by the method of Chinese Pharmacopeia. The effects of matrix in plasma and other glycosaminoglycans on the determination of CS were also investigated. The results showed that a small quantity of blood plasma had no effect on the determination of CS and when the concentration ratio of CS to heparin was more than 10:1, the influence of heparin on the detection of CS could be ignored. This work gave a specific research direction for the detection of CS in the presence of metal nanoparticles.

  1. Galvanic Cell Type Sensor for Soil Moisture Analysis.

    PubMed

    Gaikwad, Pramod; Devendrachari, Mruthyunjayachari Chattanahalli; Thimmappa, Ravikumar; Paswan, Bhuneshwar; Raja Kottaichamy, Alagar; Makri Nimbegondi Kotresh, Harish; Thotiyl, Musthafa Ottakam

    2015-07-21

    Here we report the first potentiometric sensor for soil moisture analysis by bringing in the concept of Galvanic cells wherein the redox energies of Al and conducting polyaniline are exploited to design a battery type sensor. The sensor consists of only simple architectural components, and as such they are inexpensive and lightweight, making it suitable for on-site analysis. The sensing mechanism is proved to be identical to a battery type discharge reaction wherein polyaniline redox energy changes from the conducting to the nonconducting state with a resulting voltage shift in the presence of soil moisture. Unlike the state of the art soil moisture sensors, a signal derived from the proposed moisture sensor is probe size independent, as it is potentiometric in nature and, hence, can be fabricated in any shape or size and can provide a consistent output signal under the strong aberration conditions often encountered in soil moisture analysis. The sensor is regenerable by treating with 1 M HCl and can be used for multiple analysis with little read out hysteresis. Further, a portable sensor is fabricated which can provide warning signals to the end user when the moisture levels in the soil go below critically low levels, thereby functioning as a smart device. As the sensor is inexpensive, portable, and potentiometric, it opens up avenues for developing effective and energy efficient irrigation strategies, understanding the heat and water transfer at the atmosphere-land interface, understanding soil mechanics, forecasting the risk of natural calamities, and so on.

  2. Analysis of Geochemical Element Behaviors in Soils by Multifractal Methods

    NASA Astrophysics Data System (ADS)

    Xie, S.; Cheng, Q.; Huang, K.; Bao, Z.

    2009-04-01

    Soils are not only one of crucial environmental media but also one of the most important objects for environmental geochemistry. Usually, soils are developed from various kinds of rocks. During the weathering of rocks, the issues, such as the evolution of geochemical elements and the different behaviors of geochemical elements in soils, have been gaining great concern. This paper will explore the geochemical distribution patterns by fractal and multifractal methods, and then use the soils with different periods in the Hainan Island, China, as the case study to analyze the behaviors of geochemical elements. The soils in the Hainan Island are strongly aluminized, and anthropological activities have little impacts on the zonal soils. Thus the dynamic evolutions of the geochemical elements in soils are relatively of their original characteristics. The TAS analysis based on the diagram of SiO2-Na2O+K2O is implemented and has shown that most of the soils are evolved from granodiorite rocks, and some from basalts. This analytical result is quite consistent to the regional rock sampling investigation. Spider diagrams of trace elements also present that the soils are mainly developed from basalts and granites. In terms of the multifractal parameters characterizing the distribution patterns of the geochemical elements in the soils evolved from seven geological systems, it is shown that in the surroundings the multifractal behaviors of the geochemical elements are strongly associated with their inner geochemical behaviors on one hand, and on the other hand, anthropological activities and weathering behaviors of the soils also have specific effects on the multifractal parameters. In the study, the right parts of the multifractal spectrum curves of the geochemical elements in soils evolved from the Changchengian system change significantly, which implies that there are much lower geochemical data for elements. But for the soils evolved from granites and basalts, the left parts

  3. COMPOSITE SAMPLING FOR SOIL VOC ANALYSIS

    EPA Science Inventory

    Data published by numerous researchers over the last decade demonstrate that there is a high degree of spatial variability in the measurement of volatile organic compounds (VOCs) in soil at contaminated waste sites. This phenomenon is confounded by the use of a small sample aliqu...

  4. INNOVATIONS IN SOIL SAMPLING AND DATA ANALYSIS

    EPA Science Inventory

    Successful research outcomes from the VOC in soils work will provide the Agency with methods and techniques that provide the accurate VOC concentrations so that decisions related to a contaminated site can be made to optimize the protectiveness to the environment and human health...

  5. Microwave soil moisture measurements and analysis

    NASA Technical Reports Server (NTRS)

    Newton, R. W.; Howell, T. A.; Nieber, J. L.; Vanbavel, C. H. M. (Principal Investigator)

    1980-01-01

    An effort to develop a model that simulates the distribution of water content and of temperature in bare soil is documented. The field experimental set up designed to acquire the data to test this model is described. The microwave signature acquisition system (MSAS) field measurements acquired in Colby, Kansas during the summer of 1978 are pesented.

  6. Regional Soiling Stations for PV: Soling Loss Analysis

    SciTech Connect

    TamizhMani, G.; King, B.; Venkatesan, A.; Deline, Chris; Pavgi, A.; Tatapudi, S.; Kuitche, J.; Chokor, A.; El Asmar, M.

    2016-11-21

    The soiling loss factor (SLF) of photovoltaic (PV) modules/system is an interplay between the dust frequency and intensity of the site, rain frequency and intensity of the site, tilt angle and height of the module installation, and wind speed and humidity of the site. The integrated area of the downward peaks of the SLF time series plots for a year provides the annual soiling loss for the system at each tilt angle. Sandia National Laboratories, in collaboration with Arizona State University, installed five regional soiling stations around the country and collected soiling loss data over a year. Four of these soiling stations are located at the U.S. Department of Energy Regional Test Centers (Florida, Albuquerque, Colorado and Vermont), while the fifth station is located at the Arizona State University Photovoltaic Reliability Lab (Arizona). This paper presents an analysis on the SLF for each test site at ten different tilt angles. Based on the analysis of a yearlong data obtained in 2015, it appears to indicate that the Arizona site experienced the highest annual soiling loss with a significant dependence on the tilt angle while the other four sites experienced a negligibly small annual soiling loss with practically no dependence on the tilt angle.

  7. High dimensional reflectance analysis of soil organic matter

    NASA Technical Reports Server (NTRS)

    Henderson, T. L.; Baumgardner, M. F.; Franzmeier, D. P.; Stott, D. E.; Coster, D. C.

    1992-01-01

    Recent breakthroughs in remote-sensing technology have led to the development of high spectral resolution imaging sensors for observation of earth surface features. This research was conducted to evaluate the effects of organic matter content and composition on narrowband soil reflectance across the visible and reflective infrared spectral ranges. Organic matter from four Indiana agricultural soils, ranging in organic C content from 0.99 to 1.72 percent, was extracted, fractionated, and purified. Six components of each soil were isolated and prepared for spectral analysis. Reflectance was measured in 210 narrow bands in the 400- to 2500-nm wavelength range. Statistical analysis of reflectance values indicated the potential of high dimensional reflectance data in specific visible, near-infrared, and middle-infrared bands to provide information about soil organic C content, but not organic matter composition. These bands also responded significantly to Fe- and Mn-oxide content.

  8. Interactive computer code for dynamic and soil structure interaction analysis

    SciTech Connect

    Mulliken, J.S.

    1995-12-01

    A new interactive computer code is presented in this paper for dynamic and soil-structure interaction (SSI) analyses. The computer program FETA (Finite Element Transient Analysis) is a self contained interactive graphics environment for IBM-PC`s that is used for the development of structural and soil models as well as post-processing dynamic analysis output. Full 3-D isometric views of the soil-structure system, animation of displacements, frequency and time domain responses at nodes, and response spectra are all graphically available simply by pointing and clicking with a mouse. FETA`s finite element solver performs 2-D and 3-D frequency and time domain soil-structure interaction analyses. The solver can be directly accessed from the graphical interface on a PC, or run on a number of other computer platforms.

  9. Integrative analysis of Geobacter spp. and sulfate-reducing bacteria during uranium bioremediation

    NASA Astrophysics Data System (ADS)

    Barlett, M.; Zhuang, K.; Mahadevan, R.; Lovley, D.

    2012-03-01

    Enhancing microbial U(VI) reduction with the addition of organic electron donors is a promising strategy for immobilizing uranium in contaminated groundwaters, but has yet to be optimized because of a poor understanding of the factors controlling the growth of various microbial communities during bioremediation. In previous field trials in which acetate was added to the subsurface, there were two distinct phases: an initial phase in which acetate-oxidizing, U(VI)-reducing Geobacter predominated and U(VI) was effectively reduced and a second phase in which acetate-oxidizing sulfate reducing bacteria (SRB) predominated and U(VI) reduction was poor. The interaction of Geobacter and SRB was investigated both in sediment incubations that mimicked in situ bioremediation and with in silico metabolic modeling. In sediment incubations, Geobacter grew quickly but then declined in numbers as the microbially reducible Fe(III) was depleted whereas the SRB grow more slowly and reached dominance after 30-40 days. Modeling predicted a similar outcome. Additional modeling in which the relative initial percentages of the Geobacter and SRB were varied indicated that there was little to no competitive interaction between Geobacter and SRB when acetate was abundant. Further simulations suggested that the addition of Fe(III) would revive the Geobacter, but have little to no effect on the SRB. This result was confirmed experimentally. The results demonstrate that it is possible to predict the impact of amendments on important components of the subsurface microbial community during groundwater bioremediation. The finding that Fe(III) availability, rather than competition with SRB, is the key factor limiting the activity of Geobacter during in situ uranium bioremediation will aid in the design of improved uranium bioremediation strategies.

  10. Integrative analysis of the interactions between Geobacter spp. and sulfate-reducing bacteria during uranium bioremediation

    NASA Astrophysics Data System (ADS)

    Barlett, M.; Zhuang, K.; Mahadevan, R.; Lovley, D. R.

    2011-11-01

    Enhancing microbial U(VI) reduction with the addition of organic electron donors is a promising strategy for immobilizing uranium in contaminated groundwaters, but has yet to be optimized because of a poor understanding of the factors controlling the growth of various microbial communities during bioremediation. In previous field trials in which acetate was added to the subsurface, there were two distinct phases: an initial phase in which acetate-oxidizing, U(VI)-reducing Geobacter predominated and U(VI) was effectively reduced and a second phase in which acetate-oxidizing sulfate reducing bacteria (SRB) predominated and U(VI) reduction was poor. The interaction of Geobacter and SRB was investigated both in sediment incubations that mimicked in situ bioremediation and with in silico metabolic modeling. In sediment incubations, Geobacter grew quickly but then declined in numbers as the microbially reducible Fe(III) was depleted whereas the SRB grow more slowly and reached dominance after 30-40 days. Modeling predicted a similar outcome. Additional modeling in which the relative initial percentages of the Geobacter and SRB were varied indicated that there was little to no competitive interaction between Geobacter and SRB when acetate was abundant. Further simulations suggested that the addition of Fe(III) would revive the Geobacter, but have little to no effect on the SRB. This result was confirmed experimentally. The results demonstrate that it is possible to predict the impact of amendments on important components of the subsurface microbial community during groundwater bioremediation. The finding that Fe(III) availability, rather than competition with SRB, is the key factor limiting the activity of Geobacter during in situ uranium bioremediation will aid in the design of improved uranium bioremediation strategies.

  11. Analysis of soil and species composition

    NASA Technical Reports Server (NTRS)

    Verma, Shashi B.

    1992-01-01

    Measurements were made during May to October, 1987 and June to August, 1989 over a tallgrass prairie near Manhattan, Kansas. Soil at the experimental site is predominantly Dwight silty clay loam. The prairie was burned on 16 April 1987 and on 28 April 1989 to improve the mix of grasses and forbs. The experimental area was not grazed during 1986 - 1989. A summary of results are given for soil moisture and plant growth; momentum flux and canopy aerodynamic characteristics; evapotranspiration, components of energy balance and canopy conductance; modeling canopy stomatal conductance; canopy photosynthesis, photosynthetic efficiency and water use efficiency; modeling canopy photosynthesis; the carbon dioxide budget in a temperate grassland ecosystem; and photosynthesis and stomatal conductance related to reflectance on the canopy scale.

  12. Soil Analysis using the semi-parametric NAA technique

    SciTech Connect

    Zamboni, C. B.; Silveira, M. A. G.; Medina, N. H.

    2007-10-26

    The semi-parametric Neutron Activation Analysis technique, using Au as a flux monitor, was applied to measure element concentrations of Br, Ca, Cl, K, Mn and Na for soil characterization. The results were compared with those using the Instrumental Neutron Activation Analysis technique and they found to be compatible. The viability, advantages, and limitations of using these two analytic methodologies are discussed.

  13. Biogeography of sulfate-reducing prokaryotes in river floodplains.

    PubMed

    Miletto, Marzia; Loy, Alexander; Antheunisse, A Martijn; Loeb, Roos; Bodelier, Paul L E; Laanbroek, Hendrikus J

    2008-06-01

    In this study, a large-scale field survey was conducted to describe the biogeography of sulfate-reducing prokaryotes (SRPs) in river floodplains. Fingerprints obtained with three methods, i.e. 16S rRNA gene-based oligonucleotide microarray, dsrB-based denaturing gradient gel electrophoresis (DGGE) and polar lipid-derived fatty acid (PLFA) analyses, were used as a proxy to describe the SRPs community diversity. Each set of profiles was subjected to a combined multivariate/correlation analysis in order to compare SRP community profiles and to highlight the environmental variables influencing the SRPs distribution along environmental gradients. Floodplain soils harbored distinct SRP communities displaying biogeographic patterns. Nearly all profiles from the tidal sites consistently separated from the nontidal sites, independently from the screening method and the multivariate statistics used. The distribution of the microarray/DGGE/PLFA-based fingerprints in the principal component plots could be correlated to eight soil variables, i.e. soil organic matter, total nitrogen, total phosphorous and total potassium, and extractable ammonium, nitrate, phosphate and sulfate, as well as seven pore water variables, i.e. phosphate, sulfate, sulfide, chloride, sodium, potassium and magnesium ions. Indication of a salinity- and plant nutrient-dependent distribution of SRPs related to Desulfosarcina, Desulfomonile and Desulfobacter was suggested by microarray, DGGE and PLFA analyses.

  14. SoilEngineering: A Microsoft Excel ® spreadsheet © program for geotechnical and geophysical analysis of soils

    NASA Astrophysics Data System (ADS)

    Ozcep, Ferhat

    2010-10-01

    SoilEngineering is a user-friendly, interactive Microsoft Excel ® spreadsheet program for the geotechnical and geophysical analysis of soils. The influence of soil behavior on earthquake characteristics and/or structural design is one of the major elements in investigating earthquake forces, and thus the structural response with static and dynamic loads. With its interactive nature, the program provides the user with an opportunity to undertake soil static and dynamic load analysis. The program is formed by three main options: (1) Data Preparation, (2) Derived Parameters and (3) Analysis of Soil Problems (with Static and Dynamic Loads). The Data Preparation option is divided into four modules: Seismic Refraction Data, Geoelectrical Data, Borehole and SPT ( N) Data and Laboratory Data. The Derived Parameters option is divided into two modules: Geotechnical Parameters Derived from Geophysical Data and Relationships between Vs and SPT ( N) Values. The Analysis of Soil Problems (with Static and Dynamic Loads) option is divided into nine modules: Bearing Capacity for Shallow and Deep Foundations, Settlement Analysis (Static and Dynamic Loads), Estimation of Subgrade Reaction Coefficient, Slope Stability Analysis, Seismic Hazard Analysis, Strong Motion Attenuation Relationships, Acceleration/Velocity/Displacement Spectra, Soil Amplification Analysis and Soil Liquefaction Analysis. Soil engineering also permits plotting geophysical and geotechnical data with analysis.

  15. Genetic diversity analysis of faba bean (Vicia faba L.) germplasms using sodium dodecyl sulfate-polyacrylamide gel electrophoresis.

    PubMed

    Hou, W W; Zhang, X J; Shi, J B; Liu, Y J

    2015-10-30

    To investigate genetic diversity and relationships of 101 faba bean (Vicia faba L.), landraces and varieties from different provinces of China and abroad were analyzed by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis (PAGE). A total of 2625 unambiguous and stable bands from 101 germplasms were detected, and 36 different bands were classified according to the electrophoretic mobility patterns of the proteins as determined by the SDS-PAGE analysis, of which 16 were polymorphic. Besides the common bands, the protein bands of 92, 75, 62, 40, 34, 17, and 13 kDa presented the highest frequencies of 92.08, 90.10, 99.01, 95.05, 95.05, 98.02, and 95.05%, respectively. The other 29 polymorphic protein bands showed higher polymorphism with 16.09 polymorphic bands in average. The genetic similarity of the 101 genotypes tested varied from 0.6111 to 0.9722, with an average of 0.7122. Cluster analysis divided the 101 genotypes into six major clusters, which was consistent with the systematic classification of faba bean done in previous studies. The overall results indicated that SDS-PAGE was a useful tool for genetic diversity analysis and laid a solid foundation for future faba bean breeding.

  16. Digital gene expression profiling analysis of duodenum transcriptomes in SD rats administered ferrous sulfate or ferrous glycine chelate by gavage.

    PubMed

    Zhuo, Zhao; Fang, Shenglin; Hu, Qiaoling; Huang, Danping; Feng, Jie

    2016-11-30

    The absorption of different iron sources is a trending research topic. Many studies have revealed that organic iron exhibits better bioavailability than inorganic iron, but the concrete underlying mechanism is still unclear. In the present study, we examined the differences in bioavailability of ferrous sulfate and ferrous glycinate in the intestines of SD rats using Illumina sequencing technology. Digital gene expression analysis resulted in the generation of almost 128 million clean reads, with expression data for 17,089 unigenes. A total of 123 differentially expressed genes with a |log2(fold change)| >1 and q-value < 0.05 were identified between the FeSO4 and Fe-Gly groups. Gene Ontology functional analysis revealed that these genes were involved in oxidoreductase activity, iron ion binding, and heme binding. Kyoto Encyclopedia of Genes and Genomes pathway analysis also showed relevant important pathways. In addition, the expression patterns of 9 randomly selected genes were further validated by qRT-PCR, which confirmed the digital gene expression results. Our study showed that the two iron sources might share the same absorption mechanism, and that differences in bioavailability between FeSO4 and Fe-Gly were not only in the absorption process but also during the transport and utilization process.

  17. Digital gene expression profiling analysis of duodenum transcriptomes in SD rats administered ferrous sulfate or ferrous glycine chelate by gavage

    PubMed Central

    Zhuo, Zhao; Fang, Shenglin; Hu, Qiaoling; Huang, Danping; Feng, Jie

    2016-01-01

    The absorption of different iron sources is a trending research topic. Many studies have revealed that organic iron exhibits better bioavailability than inorganic iron, but the concrete underlying mechanism is still unclear. In the present study, we examined the differences in bioavailability of ferrous sulfate and ferrous glycinate in the intestines of SD rats using Illumina sequencing technology. Digital gene expression analysis resulted in the generation of almost 128 million clean reads, with expression data for 17,089 unigenes. A total of 123 differentially expressed genes with a |log2(fold change)| >1 and q-value < 0.05 were identified between the FeSO4 and Fe-Gly groups. Gene Ontology functional analysis revealed that these genes were involved in oxidoreductase activity, iron ion binding, and heme binding. Kyoto Encyclopedia of Genes and Genomes pathway analysis also showed relevant important pathways. In addition, the expression patterns of 9 randomly selected genes were further validated by qRT-PCR, which confirmed the digital gene expression results. Our study showed that the two iron sources might share the same absorption mechanism, and that differences in bioavailability between FeSO4 and Fe-Gly were not only in the absorption process but also during the transport and utilization process. PMID:27901057

  18. Cement composition and sulfate attack

    SciTech Connect

    Shanahan, Natalya; Zayed, Abla . E-mail: zayed@eng.usf.edu

    2007-04-15

    Four cements were used to address the effect of tricalcium silicate content of cement on external sulfate attack in sodium sulfate solution. The selected cements had similar fineness and Bogue-calculated tricalcium aluminate content but variable tricalcium silicates. Durability was assessed using linear expansion and compressive strength. Phases associated with deterioration were examined using scanning electron microscopy and X-ray diffraction. Mineralogical phase content of the as-received cements was studied by X-ray diffraction using two methods: internal standard and Rietveld analysis. The results indicate that phase content of cements determined by X-ray mineralogical analysis correlates better with the mortar performance in sulfate environment than Bogue content. Additionally, it was found that in cements containing triclacium aluminate only in the cubic form, the observed deterioration is affected by tricalcium silicate content. Morphological similarities between hydration products of high tricalcium aluminate and high tricalcium silicate cements exposed to sodium sulfate environment were also observed.

  19. Residual keratan sulfate in chondroitin sulfate formulations for oral administration.

    PubMed

    Pomin, Vitor H; Piquet, Adriana A; Pereira, Mariana S; Mourão, Paulo A S

    2012-10-01

    Chondroitin sulfate is a biomedical glycosaminoglycan (GAG) mostly used as a dietary supplement. We undertook analysis on some formulations of chondroitin sulfates available for oral administration. The analysis was based on agarose-gel electrophoresis, strong anion-exchange chromatography, digestibility with specific GAG lyases, uronic acid content, NMR spectroscopy, and size-exclusion chromatography. Keratan sulfate was detected in batches from shark cartilage, averaging ∼16% of the total GAG. Keratan sulfate is an inert material, and hazardous effects due to its presence in these formulations are unlikely to occur. However, its unexpected high percentage compromises the desired amounts of the real ingredient specified on the label claims, and forewarns the pharmacopeias to update their monographs. The techniques they recommended, especially cellulose acetate electrophoresis, are inefficient in detecting keratan sulfate in chondroitin sulfate formulations. In addition, this finding also alerts the manufacturers for improved isolation procedures as well as the supervisory agencies for better audits. Analysis based on strong anion-exchange chromatography is shown to be more reliable than the methods presently suggested by standard pharmacopeias.

  20. Factors controlling sulfate retention and transport in a forested watershed in the Georgia Piedmont

    SciTech Connect

    Shanley, J.B.

    1989-01-01

    The mechanisms that control sulfate retention and transport were investigated at Panola Mountain, a 41-ha forested watershed in the Georgia Piedmont. The approach combined laboratory determination of soil sulfate sorption properties with a field study that was designed to infer mechanisms controlling sulfate chemistry from temporal and spatial variations in sulfate concentration and flux. Aqueous sulfate concentrations are regulated at two discrete levels: near 100 {mu}eq L{sup {minus}1} by organic-rich upper horizon soils and near 10 {mu}eq L{sup {minus}1} by deeper mineral soils. Upper horizon soils contain a large pool of labile sulfate that damps variations in sulfate concentrations. Runoff from a 3-ha granodiorite outcrop in the headwaters varied from near zero to greater than 500 {mu}eq L{sup {minus}1} sulfate. After only minimal contact with organic-rich soils, however, sulfate was regulated at 80-120 {mu}eq L{sup {minus}1} in the headwater stream. Soil solution (200 {mu}eq L{sup {minus}1} sulfate) and groundwater in the upper part of the watershed (50 {mu}eq L{sup {minus}1} sulfate) also were controlled primarily by the organic horizon. In the lower part of the basin, mineral soil regulates sulfate in groundwater and low-flow streamwater at approximately 10 {mu}eq L{sup {minus}1}. Streamwater sulfate, however, increased to 100 {mu}eq L{sup {minus}1} or more during storms. Regulation of stream sulfate concentration shifted from the sulfate-retaining mineral soil at low flow to the upper-horizon, organic-rich soil at high flow. From October 1985 to September 1988, the watershed retained 75.4% of sulfate in wet deposition. For individual storms, however, sulfate retention ranged from less than 0% (net export) to greater than 99%.

  1. Analysis of volatile phase transport in soils using natural radon gas as a tracer

    SciTech Connect

    Chen, C.; Thomas, D.M.

    1992-12-31

    We have conducted a field study of soil gas transport processes using radon gas as a naturally occurring tracer. The .experiment monitored soil gas radon activity, soil moisture, and soil temperature at three depths in the shallow soil column; barometric pressure, rainfall and wind speed were monitored at the soil surface. Linear and multiple regression analysis of the data sets has shown that the gas phase radon activities under natural environmental conditions are influenced by soil moisture content, barometric pressure variations, soil temperature and soil structure. The effect of wind speed on subsurface radon activities under our field conditions has not been demonstrated.

  2. Analysis of volatile phase transport in soils using natural radon gas as a tracer

    SciTech Connect

    Chen, C.; Thomas, D.M.

    1992-01-01

    We have conducted a field study of soil gas transport processes using radon gas as a naturally occurring tracer. The .experiment monitored soil gas radon activity, soil moisture, and soil temperature at three depths in the shallow soil column; barometric pressure, rainfall and wind speed were monitored at the soil surface. Linear and multiple regression analysis of the data sets has shown that the gas phase radon activities under natural environmental conditions are influenced by soil moisture content, barometric pressure variations, soil temperature and soil structure. The effect of wind speed on subsurface radon activities under our field conditions has not been demonstrated.

  3. ROSETTA lander Philae - soil strength analysis

    NASA Astrophysics Data System (ADS)

    Roll, Reinhard; Witte, Lars; Arnold, Walter

    2016-12-01

    The landing of Philae, the lander of ESA's ROSETTA-mission, on November 12th 2014 on Comet 67P/Churyumov-Gerasimenko, was planned as a descent with passive landing activating a damper system and anchoring by harpoons at touch-down. The lander was not fixed to the ground at touch-down due to failing harpoons. The lander damper, however, was actuated for a length of 42.6 mm with a maximal speed of 0.08 m/s, while the lander speed was 1 m/s. Based on the damper data and a detailed mechanical model of Philae, an estimate can be made for the forces acting and the energy dissipated at touch-down inside the lander and the energy dissipated by ground penetration. The forces acting at ground penetration provide constraints on the mechanical strength of the soil. Two different soil models are investigated. Assuming constant compressive strength σ, one obtains σ ≈ 2 kPa. Assuming an increasing σs strength with penetration depth with results in σs = 3 kPa/m fits the damper data best.

  4. Direct analysis of sialylated or sulfated glycosphingolipids and other polar and neutral lipids using TLC-MS interfaces.

    PubMed

    Park, Hyejung; Zhou, Ying; Costello, Catherine E

    2014-04-01

    Gangliosides and sulfatides (STs) are acidic glycosphingolipids (GSLs) that have one or more sialic acids or sulfate substituents, in addition to neutral sugars, attached to the C-1 hydroxyl group of the ceramide long chain base. TLC is a widely employed and convenient technique for separation and characterization of GSLs. When TLC is directly coupled to MS, it provides both the molecular mass and structural information without further purification. Here, after development of the TLC plates, the structural analyses of acidic GSLs, including gangliosides and STs, were investigated using the liquid extraction surface analysis (LESA™) and CAMAG TLC-MS interfaces coupled to an ESI QSTAR Pulsar i quadrupole orthogonal TOF mass spectrometer. Coupling TLC with ESI-MS allowed the acquisition of high resolution mass spectra of the acidic GSLs with high sensitivity and mass accuracy, without the loss of sialic acid residues that frequently occurs during low-pressure MALDI MS. These systems were then applied to the analysis of total lipid extracts from bovine brain. This allowed profiling of many different lipid classes, not only gangliosides and STs, but also SMs, neutral GSLs, and phospholipids.

  5. The system of sulfated galactans from the red seaweed Gymnogongrus torulosus (Phyllophoraceae, Rhodophyta): Location and structural analysis.

    PubMed

    Estevez, José M; Ciancia, Marina; Cerezo, Alberto S

    2008-09-05

    Sulfated polysaccharides were localized in the cuticle, cortex and medulla of the gametophyte thallus, being more concentrated in the intercellular matrix than in the cell walls. During the water extraction sequence, a small percentage of galactan sulfates (5.1% of dry seaweed) with average low Mr (6-11.4kDa) were extracted at room temperature without disturbing the cellular arrangement, while sulfated galactans of average medium Mr (18-45kDa) were obtained by further hot-water extractions (52.4% of dry seaweed), with diorganization of the tissue. The residue (40.0% of dry seaweed) still contained carrageenan-type (major) and agaran-type (minor) galactans. Part of these galactans was extracted with 8.4% LiCl solution in DMSO, from which "pure" κ/ι-carrageenans were isolated. Carrageenans and agarans were extracted in a ratio 1:0.5, showing the highest amount of agaran-structures for a carrageenophyte. The galactans comprise alternating 4-sulfated (major) and non-sulfated (minor) 3-linked β-d-galactopyranose units, and 4-linked α-galactopyranose units with the following substitutions: (i) non-sulfated and 2-sulfated 3,6-anhydro-α-d-galactopyranose residues in the carrageenan-structures, which belong to the κ-family (κ/ι-carrageenans); (ii) 3-sulfated α-l-galactopyranose units and 2-sulfated 3,6-anhydro-α-l-galactopyranose residues in the agaran-structures. Alkaline treatment and alkaline dialysis of the main extracts gave "pure" κ/ι-carrageenans, showing that carrageenan molecules are extracted together with low Mr agarans or agaran-dl-hybrids.

  6. Transcriptome and metabolome analysis of plant sulfate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulfur, nitrogen and phosphorus nutritional responses in Arabidopsis

    PubMed Central

    Bielecka, Monika; Watanabe, Mutsumi; Morcuende, Rosa; Scheible, Wolf-Rüdiger; Hawkesford, Malcolm J.; Hesse, Holger; Hoefgen, Rainer

    2015-01-01

    Sulfur is an essential macronutrient for plant growth and development. Reaching a thorough understanding of the molecular basis for changes in plant metabolism depending on the sulfur-nutritional status at the systems level will advance our basic knowledge and help target future crop improvement. Although the transcriptional responses induced by sulfate starvation have been studied in the past, knowledge of the regulation of sulfur metabolism is still fragmentary. This work focuses on the discovery of candidates for regulatory genes such as transcription factors (TFs) using ‘omics technologies. For this purpose a short term sulfate-starvation/re-supply approach was used. ATH1 microarray studies and metabolite determinations yielded 21 TFs which responded more than 2-fold at the transcriptional level to sulfate starvation. Categorization by response behaviors under sulfate-starvation/re-supply and other nutrient starvations such as nitrate and phosphate allowed determination of whether the TF genes are specific for or common between distinct mineral nutrient depletions. Extending this co-behavior analysis to the whole transcriptome data set enabled prediction of putative downstream genes. Additionally, combinations of transcriptome and metabolome data allowed identification of relationships between TFs and downstream responses, namely, expression changes in biosynthetic genes and subsequent metabolic responses. Effect chains on glucosinolate and polyamine biosynthesis are discussed in detail. The knowledge gained from this study provides a blueprint for an integrated analysis of transcriptomics and metabolomics and application for the identification of uncharacterized genes. PMID:25674096

  7. Image Analysis to Estimate Mulch Residue in Soil

    PubMed Central

    Moreno, Carmen; Mancebo, Ignacio; Saa, Antonio; Moreno, Marta M.

    2014-01-01

    Mulching is used to improve the condition of agricultural soils by covering the soil with different materials, mainly black polyethylene (PE). However, problems derived from its use are how to remove it from the field and, in the case of it remaining in the soil, the possible effects on it. One possible solution is to use biodegradable plastic (BD) or paper (PP), as mulch, which could present an alternative, reducing nonrecyclable waste and decreasing the environmental pollution associated with it. Determination of mulch residues in the ground is one of the basic requirements to estimate the potential of each material to degrade. This study has the goal of evaluating the residue of several mulch materials over a crop campaign in Central Spain through image analysis. Color images were acquired under similar lighting conditions at the experimental field. Different thresholding methods were applied to binarize the histogram values of the image saturation plane in order to show the best contrast between soil and mulch. Then the percentage of white pixels (i.e., soil area) was used to calculate the mulch deterioration. A comparison of thresholding methods and the different mulch materials based on percentage of bare soil area obtained is shown. PMID:25309953

  8. Image analysis to estimate mulch residue in soil.

    PubMed

    Moreno, Carmen; Mancebo, Ignacio; Saa, Antonio; Moreno, Marta M

    2014-01-01

    Mulching is used to improve the condition of agricultural soils by covering the soil with different materials, mainly black polyethylene (PE). However, problems derived from its use are how to remove it from the field and, in the case of it remaining in the soil, the possible effects on it. One possible solution is to use biodegradable plastic (BD) or paper (PP), as mulch, which could present an alternative, reducing nonrecyclable waste and decreasing the environmental pollution associated with it. Determination of mulch residues in the ground is one of the basic requirements to estimate the potential of each material to degrade. This study has the goal of evaluating the residue of several mulch materials over a crop campaign in Central Spain through image analysis. Color images were acquired under similar lighting conditions at the experimental field. Different thresholding methods were applied to binarize the histogram values of the image saturation plane in order to show the best contrast between soil and mulch. Then the percentage of white pixels (i.e., soil area) was used to calculate the mulch deterioration. A comparison of thresholding methods and the different mulch materials based on percentage of bare soil area obtained is shown.

  9. Does wildfire ash block soil pores? A micromorphological analysis of burned soils.

    NASA Astrophysics Data System (ADS)

    Balfour, V.; Woods, S. W.

    2007-12-01

    Increases in runoff and erosion after forest wildfires are often attributed to the removal of surface cover, the formation of water repellent soils, and sealing of the soil surface by ash. The latter process involves clogging of pores by ash as well as rainsplash induced compaction of the ash layer. However, few studies have directly addressed the hydrologic role of ash and no studies have documented ash sealing in a forest fire environment. In an attempt to determine whether ash contributes to reduced infiltration after fire we conducted a micromorphological analysis of soils collected before and after three controlled pile burns at the Lubrecht Experimental Forest in western Montana. The burns were conducted with a fuel load of 90 Mg ha-1 on sites dominated by Lodgepole pine ( Pinus contorta) with scattered Douglas fir ( Pseudotoga menziesii), sandy loam soils and a mean of 99% ground cover (litter, duff and live vegetation). Soil cores were collected before burning, immediately after burning and after the burned areas had been subjected to simulated rainfall at an intensity of 80 mm hr-1 for 1 hour. The cores were impregnated with resin from which thin sections were made and microscopically analyzed to determine the vertical distribution of organic material, ash, mineral soil and porosity. Burning consumed all of the surface litter and duff and formed a <1cm layer of black and gray ash above the mineral soil, indicating a moderate severity burn. The mean soil temperature in the upper 1 cm of the mineral soil was 70° C, and there was no detectable increase in water repellency. Rainfall simulations conducted before and after the fires indicated that burning reduced the infiltration capacity from a pre-fire mean of 87 mm hr-1 to a post-fire mean of 35 mm hr-1. Prior to burning the upper 1 cm of the soil was comprised of 41% non- ash organic material, 4% clastic material and 55% pore space. After burning the porosity in the upper 1 cm decreased to 36% and the solid

  10. Multivariate analysis of electron detachment dissociation and infrared multiphoton dissociation mass spectra of heparan sulfate tetrasaccharides differing only in hexuronic acid stereochemistry.

    PubMed

    Oh, Han Bin; Leach, Franklin E; Arungundram, Sailaja; Al-Mafraji, Kanar; Venot, Andre; Boons, Geert-Jan; Amster, I Jonathan

    2011-03-01

    The structural characterization of glycosaminoglycan (GAG) carbohydrates by mass spectrometry has been a long-standing analytical challenge due to the inherent heterogeneity of these biomolecules, specifically polydispersity, variability in sulfation, and hexuronic acid stereochemistry. Recent advances in tandem mass spectrometry methods employing threshold and electron-based ion activation have resulted in the ability to determine the location of the labile sulfate modification as well as assign the stereochemistry of hexuronic acid residues. To facilitate the analysis of complex electron detachment dissociation (EDD) spectra, principal component analysis (PCA) is employed to differentiate the hexuronic acid stereochemistry of four synthetic GAG epimers whose EDD spectra are nearly identical upon visual inspection. For comparison, PCA is also applied to infrared multiphoton dissociation spectra (IRMPD) of the examined epimers. To assess the applicability of multivariate methods in GAG mixture analysis, PCA is utilized to identify the relative content of two epimers in a binary mixture.

  11. Acid Sulfate Alteration on Mars

    NASA Technical Reports Server (NTRS)

    Ming, D. W.; Morris, R. V.

    2016-01-01

    A variety of mineralogical and geochemical indicators for aqueous alteration on Mars have been identified by a combination of surface and orbital robotic missions, telescopic observations, characterization of Martian meteorites, and laboratory and terrestrial analog studies. Acid sulfate alteration has been identified at all three landing sites visited by NASA rover missions (Spirit, Opportunity, and Curiosity). Spirit landed in Gusev crater in 2004 and discovered Fe-sulfates and materials that have been extensively leached by acid sulfate solutions. Opportunity landing on the plains of Meridiani Planum also in 2004 where the rover encountered large abundances of jarosite and hematite in sedimentary rocks. Curiosity landed in Gale crater in 2012 and has characterized fluvial, deltaic, and lacustrine sediments. Jarosite and hematite were discovered in some of the lacustrine sediments. The high elemental abundance of sulfur in surface materials is obvious evidence that sulfate has played a major role in aqueous processes at all landing sites on Mars. The sulfate-rich outcrop at Meridiani Planum has an SO3 content of up to 25 wt.%. The interiors of rocks and outcrops on the Columbia Hills within Gusev crater have up to 8 wt.% SO3. Soils at both sites generally have between 5 to 14 wt.% SO3, and several soils in Gusev crater contain around 30 wt.% SO3. After normalization of major element compositions to a SO3-free basis, the bulk compositions of these materials are basaltic, with a few exceptions in Gusev crater and in lacustrine mudstones in Gale crater. These observations suggest that materials encountered by the rovers were derived from basaltic precursors by acid sulfate alteration under nearly isochemical conditions (i.e., minimal leaching). There are several cases, however, where acid sulfate alteration minerals (jarosite and hematite) formed in open hydrologic systems, e.g., in Gale crater lacustrine mudstones. Several hypotheses have been suggested for the

  12. Fluorescent microscopy approaches of quantitative soil microbial analysis

    NASA Astrophysics Data System (ADS)

    Ivanov, Konstantin; Polyanskaya, Lubov

    2015-04-01

    hybridization method (FISH). This approach was used for evaluation of contribution of each gram-negative bactera group. No significant difference between the main soil gram-negative bacterial groups (phylum Proteobacteria and Bacteroidetes) was found both under anaerobic and anaerobic conditions in chernozem in the topsoil. Thus soil gram-negative bacteria play an important ecological role in natural polymer degradation as common group of microorganisms. Another approach with using cascade filtration technique for bacterial population density estimation in chernozem was compared to classical method of fluorescent microscopy. Quantification of soil bacteria with cascade filtration provided by filters with different diameters and filtering of soil suspension in fixed amount. In comparison to the classical fluorescent microscopy method the modification with filtration of soil suspension provided to quantify more bacterial cells. Thus biomass calculation results of soil bacteria by using classical fluorescent microscopy could be underestimated and combination with cascade filtration technique allow to avoid potential experimental error. Thereby, combination and comparison of several fluorescent microscopy methods modifications established during the research provided miscellaneous approaches in soil bacteria quantification and analysis of ecological roles of soil microorganisms.

  13. Analysis of cell wall extracts of Candida albicans by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot techniques.

    PubMed Central

    Ponton, J; Jones, J M

    1986-01-01

    Cell walls of intact yeast- and mycelial-phase Candida albicans B311 were extracted with different compounds: dithiothreitol, dithiothreitol with protease, dithiothreitol with lyticase, and dithiothreitol with protease followed by beta-glucuronidase with chitinase. Extracts were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot techniques. Dithiothreitol extracts contained the most satisfactory array of components for study. Analysis of these extracts demonstrated that the outer cell wall layers of Candida blastoconidia and germ tubes contained a complex array of polysaccharides, glycoproteins, and proteins. The proteins contributed to a latticework stabilized by covalent bonds that was important in determining the porosity of the outer cell wall layers. When equivalent weights were analyzed, mycelial-phase extract contained a more varied array of proteins than did yeast-phase extract. Only a portion of proteins in mycelial-phase extract elicited antibody responses in hyperimmunized rabbits or infected humans. A polysaccharide-rich, high-molecular-weight component (migrating at a position that would correspond to proteins having molecular weights of 235,000 to 250,000) and a protein component (molecular weight, 19,000) were readily demonstrable in the mycelial-phase extract but could not be identified in the yeast-phase extract. Images PMID:3527986

  14. Kinetic analysis of microbial sulfate reduction by Desulfovibrio desulfuricans in an anaerobic upflow porous media biofilm reactor

    SciTech Connect

    Chen, Chingi; Mueller, R.F.; Griebe, T. . National Science Foundation Engineering Research Center for Biofilm Engineering)

    1994-02-20

    An anaerobic upflow porous media biofilm reactor was designed to study the kinetics and stoichiometry of hydrogen sulfide production by the sulfate-reducing bacterium (SRB) Desulfovibrio desulfuricans (ATCC 5575) as the first step for the modeling and control of formation souring (H[sub 2]S) in oil field porous media. The initial indication of souring was the appearance of well-separated black spots (precipitates of iron sulfide) in the sand bed. Analysis of the pseudo-steady state column shows that there were concentration gradients for lactate and hydrogen sulfide along the column. The results indicate that most of the lactate was consumed at the front part of the column. Measurements of SRB biomass on the solid phase (sand) and in the liquid phase indicate that the maximum concentration of SRB biomass resided at the front part of the column while the maximum in the liquid phase occurred further downstream. The stoichiometry regarding lactate consumption and hydrogen sulfide production observed in the porous media reactor was different from that in a chemostat. After analyzing the radial dispersion coefficient for the SRB in porous media and kinetics of microbial growth, it was deduced that transport phenomena dominate the souring process in the porous media reactor system.

  15. N-sulfotestosteronan, a novel substrate for heparan sulfate 6-O-sulfotransferases and its analysis by oxidative degradation

    PubMed Central

    Li, Guoyun; Masuko, Sayaka; Green, Dixy E.; Xu, Yongmei; Li, Lingyun; Zhang, Fuming; Xue, Changhu; Liu, Jian; DeAngelis, Paul. L.; Linhardt, Robert J.

    2013-01-01

    Testosteronan, an unusual glycosaminoglycan first isolated from the microbe Comamonas testosteroni, was enzymatically synthesized in vitro by transferring uridine diphosphate sugars on β-p-nitrophenyl glucuronide acceptor. After chemically converting testosteronan to N-sulfotestosteronan it was tested as a substrate for sulfotransferases involved in the biosynthesis of the glycosaminoglycan, heparan sulfate. Studies using 35S-labeled 3′-phosphodenosine-5′-phosphosulfate (PAPS) showed that only 6-O-sulfotransferases acted on N-sulfotestosteronan. An oxidative depolymerization reaction was explored to generate oligosaccharides from 34S-labeled 6-O-sulfo-N-sulfotestosteroran using 34S-labeled PAPS because testosteronan was resistant to all of the tested glycosaminoglycan-degrading enzymes. Liquid chromotography-mass spectrometric analysis of the oxidatively depolymerized polysaccharides confirmed the incorporation of 34S into ~14% of the glucosamine residues. Nuclear magnetic resonance spectroscopy also showed that the sulfo groups were transferred to ~20% of the 6-hydroxyl groups in the glucosamine residue of N-sulfotestosteronan. The bioactivity of 6-O–sulfo-N-sulfotestosteronan was examined by performing protein-binding studies with fibroblast growth factors and antithrombin III using a surface plasmon resonance competition assay. The introduction of 6-O-sulfo groups enhanced N-sulfotestosteronan binding to the fibroblast growth factors, but not to antithrombin III. PMID:23606289

  16. ANTENATAL MAGNESIUM SULFATE FOR THE PREVENTION OF CEREBRAL PALSY IN PRETERM INFANTS <34 WEEKS’ GESTATION: A SYSTEMATIC REVIEW AND META-ANALYSIS

    PubMed Central

    Conde-Agudelo, Agustín; Romero, Roberto

    2012-01-01

    We conducted a systematic review and meta-analysis of randomized controlled trials to determine whether magnesium sulfate administered to women at risk of preterm delivery before 34 weeks of gestation may reduce the risk of cerebral palsy in their children. Six trials involving 4796 women and 5357 infants were included. Antenatal magnesium sulfate was associated with a significant reduction in the risk of cerebral palsy (relative risk [RR], 0.69; 95% confidence interval [CI], 0.55–0.88]), moderate or severe cerebral palsy (RR, 0.64; 95% CI, 0.44–0.92), and substantial gross motor dysfunction (RR, 0.60; 95% CI, 0.43–0.83). There was no overall difference in the risk of total pediatric mortality (RR, 1.01; 95% CI, 0.89–1.14). Minor side effects were more frequent among women receiving magnesium sulfate. In conclusion, magnesium sulfate administered to women at risk of delivery before 34 weeks of gestation reduces the risk of cerebral palsy. PMID:19482113

  17. Identification and Phylogenetic analysis of thermophilic sulfate-reducing bacteria in oil field samples by 16S rDNA gene cloning and sequencing.

    PubMed

    Leu, J Y; McGovern-Traa, C P; Porter, A J; Harris, W J; Hamilton, W A

    1998-06-01

    Thermophilic sulfate-reducing bacteria (SRB) have been recognized as an important source of hydrogen sulfide (H2S) in hydrocarbon reservoirs and in production systems. Four thermophilic SRB enrichment cultures from three different oil field samples (sandstone core, drilling mud, and production water) were investigated using 16S rDNA sequence comparative analysis. In total, 15 different clones were identified. We found spore-forming, low G+C content, thermophilic, sulfate-reducing Desulfotomaculum-related sequences present in all oil field samples, and additionally a clone originating from sandstone core which was assigned to the mesophilic Desulfomicrobium group. Furthermore, three clones related to Gram-positive, non-sulfate-reducing Thermoanaerobacter species and four clones close to Clostridium thermocopriae were found in enrichment cultures from sandstone core and from production water, respectively. In addition, the deeply rooted lineage of two of the clones suggested previously undescribed, Gram-positive, low G+C content, thermophilic, obligately anaerobic bacteria present in production water. Such thermophilic, non-sulfate-reducing microorganisms may play an important ecological role alongside SRB in oil field environments.

  18. Oxidation and cyclization of organics in Mars-like soils during evolved gas analysis

    NASA Astrophysics Data System (ADS)

    Navarro-Gonzalez, Rafael; Iñiguez, Enrique; de La Rosa, Jose; McKay, Chris

    Thermal volatilization (TV) of soils has been used as the method of choice in space because of its simplicity and reproducibility. TV was first used by the Viking Landers, which failed to detect organics at ppb levels and subsequently by the Phoenix Lander that did not find organics but instead detected the release of carbon dioxide from 400 to 680° C which was attributed to magnesium or iron carbonate, adsorbed carbon dioxide, or organics present in the soil. Future missions such as the Mars Science Laboratory from NASA and ExoMars from ESA will also use this method to release soil organics to the analytical instruments. The presence of inorganic salts or minerals can strongly modify the release of soil organics leading to their degradation and/or oxidation resulting in loss of sensitivity by several orders of magnitude. The purpose of this work is to study the matrix effects of some minerals and Martian soil analogues in the analysis of organics by TV. Samples were analyzed by TV-MS and/or TV-GC-MS in neutral (He) and reducing (H2 ) atmospheres following the methods reported by Navarro-González eta al., 2006, 2009 and Iñiguez et al., 2009. Our results show that oxidation of organic matter is n promoted by several soil minerals (iron oxides) and inorganic salts (perchlorates, persulphates, sulfates, nitrates) in a neutral atmosphere; however, in a reducing atmosphere the oxidation of organics by the mineral matrix is reduced. Furthermore it was found that the stable organics that were thermally evolved were aromatic in nature (benzene and methyl benzene). Therefore, depending on the mineral matrix there is completion between formation of aromatic compounds versus oxidation. Iñiguez, E., Navarro-González, R., de la Rosa, J., Ureña-Núnez, F., Coll, P., Raulin, F., and McKay, C.P.: 2009, On the oxidation ability of the NASA Mars-1 soil simulant during the thermal volatilization step. Implications for the search of organics on Mars. Geophys Res Lett 36, L21205

  19. Analysis of glucuronide and sulfate steroids in urine by ultra-high-performance supercritical-fluid chromatography hyphenated tandem mass spectrometry.

    PubMed

    Doué, Mickael; Dervilly-Pinel, Gaud; Pouponneau, Karinne; Monteau, Fabrice; Le Bizec, Bruno

    2015-06-01

    Profiling conjugated urinary steroids to detect anabolic-steroid misuse is recognized as an efficient analytical strategy in both chemical-food-safety and anti-doping fields. The relevance and robustness of such profiling rely on the analysis of glucuronide and sulfate steroids, which is expected to have properties including accuracy, specificity, sensitivity, and, if possible, rapidity. In this context, the ability of ultra-high-performance supercritical-fluid chromatography (UHPSFC) hyphenated tandem mass spectrometry (MS-MS) to provide reliable and accurate phase II analysis of steroids was assessed. Four stationary phases with sub-2 μm particles (BEH, BEH 2-ethyl-pyridine, HSS C18 SB, and CSH fluorophenyl) were screened for their capacity to separate several conjugated steroid isomers. Analytical conditions including stationary phase, modifier composition and percentage, back pressure, column temperature, and composition and flow rate of make-up solvent were investigated to improve the separation and/or the sensitivity. Thus, an analytical procedure enabling the analysis of eight glucuronide and 12 sulfate steroids by two different methods in 12 and 15 min, respectively, was optimized. The two procedures were evaluated, and UHPSFC-MS-MS analysis revealed its ability to provide sensitive (limits of quantification: 0.1 ng mL(-1) and 0.5 ng mL(-1) for sulfate and glucuronide steroids, respectively) and reliable quantitative performance (R(2) > 0.995, RSD < 20%, and bias < 30%) through the use of suitable labeled internal standards. Comparison with UHPLC-MS-MS was performed, and UHPSFC-MS-MS obtained better performance in terms of sensitivity. Finally, as a proof of concept, this so-called green technology was used in a chemical-food-safety context to profile steroid conjugates in urine samples from bovines treated with estradiol. Graphical Abstract Glucuronide and sulfate steroids analysis in urine by ultra-high performance supercritical fluid

  20. Emerging techniques for soil analysis via mid-infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Linker, R.; Shaviv, A.

    2009-04-01

    Transmittance and diffuse reflectance (DRIFT) spectroscopy in the mid-IR range are well-established methods for soil analysis. Over the last five years, additional mid-IR techniques have been investigated, and in particular: 1. Attenuated total reflectance (ATR) Attenuated total reflectance is commonly used for analysis of liquids and powders for which simple transmittance measurements are not possible. The method relies on a crystal with a high refractive index, which is in contact with the sample and serves as a waveguide for the IR radiation. The radiation beam is directed in such a way that it hits the crystal/sample interface several times, each time penetrating a few microns into the sample. Since the penetration depth is limited to a few microns, very good contact between the sample and the crystal must be ensured, which can be achieved by working with samples close to water saturation. However, the strong absorbance of water in the mid-infrared range as well as the absorbance of some soil constituents (e.g., calcium carbonate) interfere with some of the absorbance bands of interest. This has led to the development of several post-processing methods for analysis of the spectra. The FTIR-ATR technique has been successfully applied to soil classification as well as to determination of nitrate concentration [1, 6-8, 10]. Furthermore, Shaviv et al. [12] demonstrated the possibility of using fiber optics as an ATR devise for direct determination of nitrate concentration in soil extracts. Recently, Du et al. [5] showed that it is possible to differentiate between 14N and 15N in such spectra, which opens very promising opportunities for developing FTIR-ATR based methods for investigating nitrogen transformation in soils by tracing changes in N-isotopic species. 2. Photo-acoustic spectroscopy Photoacoustic spectroscopy (PAS) is based on absorption-induced heating of the sample, which produces pressure fluctuations in a surrounding gas. These fluctuations are

  1. Processing and statistical analysis of soil-root images

    NASA Astrophysics Data System (ADS)

    Razavi, Bahar S.; Hoang, Duyen; Kuzyakov, Yakov

    2016-04-01

    Importance of the hotspots such as rhizosphere, the small soil volume that surrounds and is influenced by plant roots, calls for spatially explicit methods to visualize distribution of microbial activities in this active site (Kuzyakov and Blagodatskaya, 2015). Zymography technique has previously been adapted to visualize the spatial dynamics of enzyme activities in rhizosphere (Spohn and Kuzyakov, 2014). Following further developing of soil zymography -to obtain a higher resolution of enzyme activities - we aimed to 1) quantify the images, 2) determine whether the pattern (e.g. distribution of hotspots in space) is clumped (aggregated) or regular (dispersed). To this end, we incubated soil-filled rhizoboxes with maize Zea mays L. and without maize (control box) for two weeks. In situ soil zymography was applied to visualize enzymatic activity of β-glucosidase and phosphatase at soil-root interface. Spatial resolution of fluorescent images was improved by direct application of a substrate saturated membrane to the soil-root system. Furthermore, we applied "spatial point pattern analysis" to determine whether the pattern (e.g. distribution of hotspots in space) is clumped (aggregated) or regular (dispersed). Our results demonstrated that distribution of hotspots at rhizosphere is clumped (aggregated) compare to control box without plant which showed regular (dispersed) pattern. These patterns were similar in all three replicates and for both enzymes. We conclude that improved zymography is promising in situ technique to identify, analyze, visualize and quantify spatial distribution of enzyme activities in the rhizosphere. Moreover, such different patterns should be considered in assessments and modeling of rhizosphere extension and the corresponding effects on soil properties and functions. Key words: rhizosphere, spatial point pattern, enzyme activity, zymography, maize.

  2. Extraction and Analysis of Microbial Phospholipid Fatty Acids in Soils

    PubMed Central

    Quideau, Sylvie A.; McIntosh, Anne C.S.; Norris, Charlotte E.; Lloret, Emily; Swallow, Mathew J.B.; Hannam, Kirsten

    2016-01-01

    Phospholipid fatty acids (PLFAs) are key components of microbial cell membranes. The analysis of PLFAs extracted from soils can provide information about the overall structure of terrestrial microbial communities. PLFA profiling has been extensively used in a range of ecosystems as a biological index of overall soil quality, and as a quantitative indicator of soil response to land management and other environmental stressors. The standard method presented here outlines four key steps: 1. lipid extraction from soil samples with a single-phase chloroform mixture, 2. fractionation using solid phase extraction columns to isolate phospholipids from other extracted lipids, 3. methanolysis of phospholipids to produce fatty acid methyl esters (FAMEs), and 4. FAME analysis by capillary gas chromatography using a flame ionization detector (GC-FID). Two standards are used, including 1,2-dinonadecanoyl-sn-glycero-3-phosphocholine (PC(19:0/19:0)) to assess the overall recovery of the extraction method, and methyl decanoate (MeC10:0) as an internal standard (ISTD) for the GC analysis. PMID:27685177

  3. Analysis of hexazinone in soil by enzyme linked immunosorbent assay

    SciTech Connect

    Bushway, R.J.; Perkins, L.B.; Reed, A.W.

    1996-10-01

    A tube enzyme immunoassay (ELA) procedure was developed for the determination of the triazine herbicide hexazinone in soil. The antibody was polyclonal and was prepared by employing metabolite A (3-(4-hydroxycyclohexyl)-6-dimethylamino)-1-methyl-1,3,5-triazine-2,4(1H,3H)-dione of hexazinone conjugated to bovine serum albumin as the immunogen. Hexazinone was extracted from soil by shaking with methanol-water 80/20 for 10 min and allowed to set overnight before reshaking for 5 min. Aliquots for EIA analysis were diluted in such a way as to always contain 8% methanol. Reproducibility results for both standards and samples were good. A correlation coefficient of 0.9562 was obtained for 76 soil samples run by EIA vs. HPLC. Of the eight known metabolites of hexazinone, 7 were tested for cross-reactivity and 5 were shown to be cross-reactive.

  4. Multifractal analysis of 2D gray soil images

    NASA Astrophysics Data System (ADS)

    González-Torres, Ivan; Losada, Juan Carlos; Heck, Richard; Tarquis, Ana M.

    2015-04-01

    Soil structure, understood as the spatial arrangement of soil pores, is one of the key factors in soil modelling processes. Geometric properties of individual and interpretation of the morphological parameters of pores can be estimated from thin sections or 3D Computed Tomography images (Tarquis et al., 2003), but there is no satisfactory method to binarized these images and quantify the complexity of their spatial arrangement (Tarquis et al., 2008, Tarquis et al., 2009; Baveye et al., 2010). The objective of this work was to apply a multifractal technique, their singularities (α) and f(α) spectra, to quantify it without applying any threshold (Gónzalez-Torres, 2014). Intact soil samples were collected from four horizons of an Argisol, formed on the Tertiary Barreiras group of formations in Pernambuco state, Brazil (Itapirema Experimental Station). The natural vegetation of the region is tropical, coastal rainforest. From each horizon, showing different porosities and spatial arrangements, three adjacent samples were taken having a set of twelve samples. The intact soil samples were imaged using an EVS (now GE Medical. London, Canada) MS-8 MicroCT scanner with 45 μm pixel-1 resolution (256x256 pixels). Though some samples required paring to fit the 64 mm diameter imaging tubes, field orientation was maintained. References Baveye, P.C., M. Laba, W. Otten, L. Bouckaert, P. Dello, R.R. Goswami, D. Grinev, A. Houston, Yaoping Hu, Jianli Liu, S. Mooney, R. Pajor, S. Sleutel, A. Tarquis, Wei Wang, Qiao Wei, Mehmet Sezgin. Observer-dependent variability of the thresholding step in the quantitative analysis of soil images and X-ray microtomography data. Geoderma, 157, 51-63, 2010. González-Torres, Iván. Theory and application of multifractal analysis methods in images for the study of soil structure. Master thesis, UPM, 2014. Tarquis, A.M., R.J. Heck, J.B. Grau; J. Fabregat, M.E. Sanchez and J.M. Antón. Influence of Thresholding in Mass and Entropy Dimension of 3-D

  5. Analysis of volatile-phase transport in soils using natural radon gas as a tracer

    SciTech Connect

    Chen, C.; Thomas, D.M.

    1994-01-01

    We have conducted a field study of soil gas transport processes using radon gas as a naturally occurring tracer. The experiment monitored soil gas radon activity, soil moisture, and soil temperature at depth; barometric pressure, rainfall, and wind speed were monitored at the soil surface. Linear and multiple regression analysis under natural environmental conditions are influenced by soil moisture content, barometric pressure variations, soil temperature, and soil structure. The effect of wind speed on subsurface radon activities under our field conditions has not been observed. 25 refs., 12 figs., 1 tab.

  6. Contribution of the Pacific Coast Area to Particulate Sulfate in the Western United States Based on Trajectory Regression Analysis

    NASA Astrophysics Data System (ADS)

    Xu, J.; Dubois, D.; Pitchford, M.; Green, M.; Etyemezian, V.

    2005-12-01

    Atmospheric aerosols can significantly reduce visibility and result in regional haze. The Clean Air Act amendments established a national visibility goal to remedy existing impairment and prevent future impairment in Federal Class I areas (national parks and wilderness areas designated by Congress), most of which are in the western U.S. In order to identify the major source regions of the atmospheric aerosols in the Class I areas of the western United States, backtrajectories are calculated for each Western Regional Air Partnership (WRAP) Class I area every three hours at three starting heights (10, 500, 1500m) for the years 2000-2002 using the NOAA HYSPLIT v4.6 model. Under the concept that the amount of time air spends over a region determines that region's contribution to the sulfate concentration measured at the receptor site, multiple-linear regression between the Interagency Monitoring of Protected Visual Environments (IMPROVE) measured sulfate concentration and the residence time in the pre-defined potential source regions was conducted for each Class I area. The results suggest that sulfate aerosol can be transported over long distances and impact large areas. Shipping and other port emissions from the Pacific Coast area are estimated to have significant contributions to atmospheric sulfate aerosol concentrations in large areas of the western United States. On average, 11 to 15 percent of the sulfate is attributed to the Pacific Coast area for all WRAP continental IMPROVE sites studied. The Pacific Coast area contributes about 50 percent to ambient sulfate for the major port areas of southern California based on the regression. These analyses suggest that shipping / port emissions need to be considered in the development of efficient control strategies for reducing the concentrations of sulfate and other aerosol species.

  7. Sulfation and biological activities of konjac glucomannan.

    PubMed

    Bo, Surina; Muschin, Tegshi; Kanamoto, Taisei; Nakashima, Hideki; Yoshida, Takashi

    2013-05-15

    The sulfation of konjac glucomannan and its anti-HIV and blood anticoagulant activities were investigated. Konjac glucomannan is a polysaccharide occurring naturally in konjac plant tubers and has high molecular weights. Solubility in water is very low, and the aqueous solutions at low concentrations have high viscosity. Before sulfation, hydrolysis by diluted sulfuric acid was carried out to decrease the molecular weights of M¯n=19.2 × 10(4)-0.2 × 10(4). Sulfation with piperidine-N-sulfonic acid or SO3-pyridine complex gave sulfated konjac glucomannans with molecular weights of M¯n=1.0 × 10(4)-0.4 × 10(4) and degrees of sulfation (DS) of 1.3-1.4. It was found that the sulfated konjac glucomannans had potent anti-HIV activity at a 50% effective concentration, (EC50) of 1.2-1.3 μg/ml, which was almost as high as that of an AIDS drug, ddC, whose EC50=3.2 μg/ml, and moderate blood anticoagulant activity, AA=0.8-22.7 units/mg, compared to those of standard sulfated polysaccharides, curdlan (10 units/mg) and dextran (22.7 units/mg) sulfates. Structural analysis of sulfated konjac glucomannans with negatively charged sulfated groups was performed by high resolution NMR, and the interaction between poly-l-lysine with positively charged amino groups as a model compound of proteins and peptides was measured by surface plasmon resonance measurement, suggesting that the sulfated konjac glucomannans had a high binding stability on immobilized poly-l-lysine. The binding of sulfated konjac glucomannan was concentration-dependent, and the biological activity of the sulfated konjac glucomannans may be due to electrostatic interaction between the sulfate and amino groups.

  8. Analysis of soil-climatic relationships on the basis of the soil map and the BIOME database

    NASA Astrophysics Data System (ADS)

    Belousova, N. I.; Nazimova, D. I.; Andreeva, N. M.

    2012-02-01

    The analysis of soil-climatic relationships was performed on the basis of the BIOME database on climate and vegetation created by the V.N. Sukachev Institute of Forestry (Siberian Branch of the Russian Academy of Sciences) and the Soil Map of the Russian Federation (1: 2.5 M scale) for the southern part of the boreal zone of Siberia. Climatic parameters (accumulated daily temperatures above 10°C, continentality of the climate, and humidity of the climate) specifying the development of major types of mesomorphic soils on this territory were determined. The climatic contacts between different soil groups were established. The soil diversity in climatic ecotones was characterized. The criteria of steady and unsteady position of soils in the space of climatic coordinates were analyzed, and the measure of the climatic sensitivity of soils was suggested.

  9. Spectral variations in rocks and soils containing ferric iron hydroxide and(or) sulfate minerals as seen by AVIRIS and laboratory spectroscopy

    USGS Publications Warehouse

    Rockwell, Barnaby W.

    2004-01-01

    Analysis of Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) data covering the Big Rock Candy Mountain area of the Marysvale volcanic field, west-central Utah, identified abundant rocks and soils bearing jarosite, goethite, and chlorite associated with volcanic rocks altered to propylitic grade during the Miocene (2321 Ma). Propylitically-altered rocks rich in pyrite associated with the relict feeder zones of convecting, shallow hydrothermal systems are currently undergoing supergene oxidation to natrojarosite, kaolinite, and gypsum. Goethite coatings are forming at the expense of jarosite where most pyrite has been consumed through oxidation in alluvium derived from pyrite-bearing zones. Spectral variations in the goethite-bearing rocks that resemble variations found in reference library samples of goethites of varying grain size were observed in the AVIRIS data. Rocks outside of the feeder zones have relatively low pyrite content and are characterized by chlorite, epidote, and calcite, with local copper-bearing quartz-calcite veins. Iron-bearing minerals in these rocks are weathering directly to goethite. Laboratory spectral analyses were applied to samples of iron-bearing rock outcrops and alluvium collected from the area to determine the accuracy of the AVIRIS-based mineral identification. The accuracy of the iron mineral identification results obtained by analysis of the AVIRIS data was confirmed. In general, the AVIRIS analysis results were accurate in identifying medium-grained goethite, coarse-grained goethite, medium- to coarse-grained goethite with trace jarosite, and mixtures of goethite and jarosite. However, rock fragments from alluvial areas identified as thin coatings of goethite with the AVIRIS data were found to consist mainly of medium- to coarse-grained goethite based on spectral characteristics in the visible and near-infrared. To determine if goethite abundance contributed to the spectral variations observed in goethite-bearing rocks

  10. Integrated Spectroscopic Studies of Anhydrous Sulfate Minerals

    NASA Technical Reports Server (NTRS)

    Lane, M. D.; Bishop, J. L.; Dyar, M. D.; Cloutis, E.; Forray, F. L.; Hiroi, T.

    2005-01-01

    Sulfates have been identified in Martian soils and bedrock and are emerging as an important indicator for aqueous activity on Mars. Sulfate minerals can form in a variety of low-temperature (evaporitic; chemical-weathering) and high-temperature (volcanic/fumarolic; hydrothermal) environments and their formational environments can range from alkaline to acidic. Although sulfates generally form in the presence of water, not all sulfates are hydrous or contain water in their structures. Many of these anhydrous sulfates (Dana group 28; Strunz class 67A) are minerals that form as accompanying phases to the main minerals in ore deposits or as replacement deposits in sedimentary rocks. However, some form from thermal decomposition of OH or H2O-bearing sulfates, such as from the reaction [1]: jarosite = yavapaiite + Fe2O3 + H2O. Where known, the stability fields of these minerals all suggest that they would be stable under martian surface conditions [2]. Thus, anhydrous sulfate minerals may contribute to martian surface mineralogy, so they must be well-represented in spectral libraries used for interpretation of the Martian surface. We present here the preliminary results of an integrated study of emittance, reflectance, and Mossbauer spectroscopy of a suite of wel-lcharacterized anhydrous sulfates.

  11. Classification of chondroitin sulfate A, chondroitin sulfate C, glucosamine hydrochloride and glucosamine 6 sulfate using chemometric techniques.

    PubMed

    Foot, M; Mulholland, M

    2005-07-01

    Chondroitin sulfate A, chondroitin sulfate C, glucosamine hydrochloride and glucosamine sulfate are natural products that are becoming increasingly popular in the treatment of arthritis. They belong to a class of compounds known as glycosaminoglycans (GAGs). They are available over the counter as nutritional supplements. However, increasing use has led to increasing scrutiny of the quality of products on the market. There is also interest in the pharmacological properties of these compounds. To facilitate this, there is a need for better qualitative and quantitative methods of analysis. This paper describes methods for achieving the qualitative identification of chondroitin sulfate A, chondroitin sulfate C, glucosamine hydrochloride or glucosamine sulfate. Fourier transform infrared spectroscopy coupled with a variety of chemometric methods successfully classified these compounds. Using soft independent modeling of class analogies (SIMCA), hierarchical cluster analysis (HCA) and principal components analysis (PCA) samples were classified as either chondroitin sulfate A, chondroitin sulfate C, glucosamine hydrochloride or glucosamine sulfate. This work also examined the discriminating ability of different sections of the spectrum. It was found that for the classification of these compounds that using the finger print region of the spectrum (below 2000 cm(-1)) gave the best discrimination.

  12. Soil organic carbon covariance with soil water content; a geostatistical analysis in cropland fields

    NASA Astrophysics Data System (ADS)

    Manns, H. R.; Berg, A. A.; von Bertoldi, P.

    2013-12-01

    Soil texture has traditionally represented the rate of soil water drainage influencing soil water content (WC) in the soil characteristic curves, hydrological models and remote sensing field studies. Although soil organic carbon (OC) has been shown to significantly increase the water holding capacity of soil in individual field studies, evidence is required to consider soil OC as a significant factor in soil WC variability at the scale of a remote sensing footprint (25 km2). The relationship of soil OC to soil WC was evaluated over 50 fields during the Soil Moisture Active Passive (SMAP) soil WC field sampling campaign over southern Manitoba, Canada. On each field, soil WC was measured at 16 sample points, at 100 m spacing to 5 cm depth with Stevens hydra probe sensors on 16 sampling dates from June 7 to July 19, 2012. Soil cores were also taken at sampling sites on each field, each sampling day, to determine gravimetric moisture, bulk density and particle size distribution. On 4 of the sampling dates, soil OC was also determined by loss on ignition on the dried soil samples from all fields. Semivariograms were created from the field mean soil OC and field mean surface soil WC sampled at midrow, over all cropland fields and averaged over all sampling dates. The semivariogram models explained a distinct relationship of both soil OC and WC within the soil over a range of 5 km with a Gaussian curve. The variance in soil that soil OC and WC have in common was a similar Gaussian curve in the cross variogram. Following spatial interpolation with Kriging, the spatial maps of soil OC and WC were also very similar with high covariance over the majority of the sampling area. The close correlation between soil OC and WC suggests they are structurally related in the soil. Soil carbon could thus assist in improving downscaling methods for remotely sensed soil WC and act as a surrogate for interpolation of soil WC.

  13. Thermochemical analysis of laterite ore alkali roasting: Comparison of sodium carbonate, sodium sulfate, and sodium hydroxide

    NASA Astrophysics Data System (ADS)

    Samadhi, Tjokorde Walmiki

    2017-01-01

    The abundance of global nickel reserve is in fact dominated by low grade laterite ores containing only approximately 1.0-1.8 %-Ni. Indonesia is a major limonite and saprolite ores source, particularly in the Sulawesi, northern Maluku, and Papua islands. Production of nickel from laterites typically requires a pre-concentration step which breaks down the mineral crystalline structure, thereby facilitating the subsequent extraction of the valuable metals. This work discusses the thermochemical analysis of the alkali roasting of an Indonesian saprolite ore using Na2CO3, Na2SO4, and NaOH. These alkali compounds are selected due to their relatively low cost. The Factsage thermochemical computation package is used to predict thermodynamically stable gaseous, solution, pure liquid, and pure solid phases present in the roasting process at temperatures from 100 to 1200°C at ambient pressure, in inert atmosphere. The formation of a liquid solution (or slag) phase is interpreted as a major indicator of mineral structure breakdown. The computed slag formation temperatures are 373.2, 1041.4, and 792.0°C when using Na2CO3, Na2SO4, and NaOH, respectively. The masses of volatilized alkali at 1200°C with a total feed mass of 100 gram are 0.49, 3.24, and 3.25 mg for Na2CO3, Na2SO4, and NaOH, respectively. It is therefore hypothesized that Na2CO3 is the most competitive sodium-based alkali for saprolite ore roasting.

  14. Analysis of rainfall infiltration law in unsaturated soil slope.

    PubMed

    Zhang, Gui-rong; Qian, Ya-jun; Wang, Zhang-chun; Zhao, Bo

    2014-01-01

    In the study of unsaturated soil slope stability under rainfall infiltration, it is worth continuing to explore how much rainfall infiltrates into the slope in a rain process, and the amount of rainfall infiltrating into slope is the important factor influencing the stability. Therefore, rainfall infiltration capacity is an important issue of unsaturated seepage analysis for slope. On the basis of previous studies, rainfall infiltration law of unsaturated soil slope is analyzed. Considering the characteristics of slope and rainfall, the key factors affecting rainfall infiltration of slope, including hydraulic properties, water storage capacity (θs - θr), soil types, rainfall intensities, and antecedent and subsequent infiltration rates on unsaturated soil slope, are discussed by using theory analysis and numerical simulation technology. Based on critical factors changing, this paper presents three calculation models of rainfall infiltrability for unsaturated slope, including (1) infiltration model considering rainfall intensity; (2) effective rainfall model considering antecedent rainfall; (3) infiltration model considering comprehensive factors. Based on the technology of system response, the relationship of rainfall and infiltration is described, and the prototype of regression model of rainfall infiltration is given, in order to determine the amount of rain penetration during a rain process.

  15. [Fractal theory and its application in the analysis of soil spatial variability: a review].

    PubMed

    Zhang, Fa-Sheng; Liu, Zuo-Xin

    2011-05-01

    Soil has spatial variability in its attributes. The analysis of soil spatial variability is of significance for soil management. This paper summarized the fractal theory and its application in spatial analysis of soil variability, with the focus on the utilization of moment method in calculating the fractal dimension of soil attributes, the multi-fractal analysis of soil spatial variability, and the scaling up of soil attributes based on multi-fractal parameters. The studies on the application of fractal theory and multi-fractal method in the analysis of soil spatial variability were also reviewed. Fractal theory could be an important tool in quantifying the spatial variability and scaling up of soil attributes.

  16. Kinetic analysis of microbial sulfate reduction by desulfovibrio desulfuricans in an anaerobic upflow porous media biofilm reactor.

    PubMed

    Chen, C I; Mueller, R F; Griebe, T

    1994-02-20

    An anaerobic upflow porous media biofilm reactor was designed to study the kinetics and stoichiometry of hydrogen sulfide production by the sulfate-reducing bacterium (SRB) Desulfovibrio desulfuricans (ATCC 5575) as the first step for the modeling and control of formation souring (H(2)S) in oil field porous media. The reactor was a packed bed (50 x 5.5 cm) tubular reactor. Sea sand (140 to 375 mum) was used as the porous media. The initial indication of souring was the appearance of well-separated black spots (precipitates of iron sulfide) in the sand bed. The blackened zones expanded radially and upward through the column. New spots also appeared and expanded into the cone shapes. Lactate (substrate) was depleted and hydrogen sulfide appeared in the effluent.Analysis of the pseudo-steady state column shows that there were concentration gradients for lactate and hydrogen sulfide along the column. The results indicate that most of the lactate was consumed at the front part of the column. Measurements of SRB biomass on the solid phase (sand) and in the liquid phase indicate that the maximum concentration of SRB biomass resided at the front part of the column while the maximum in the liquid phase occurred further downstream. The stoichiometry regarding lactate consumption and hydrogen sulfide production observed in the porous media reactor was different from that in a chemostat. After analyzing the radial dispersion coefficient for the SRB in porous media and kinetics of microbial growth, it was deduced that transport phenomena dominate the souring process in our porous media reactor system. (c) 1994 John Wiley & Sons, Inc.

  17. Effects of nitrate and water on the oxygen isotopic analysis of barium sulfate precipitated from water samples.

    PubMed

    Hannon, Janet E; Böhlke, John Karl; Mroczkowski, Stanley J

    2008-12-01

    BaSO(4) precipitated from mixed salt solutions by common techniques for SO(4) (2-) isotopic analysis may contain quantities of H(2)O and NO(3) (-) that introduce errors in O isotope measurements. Experiments with synthetic solutions indicate that delta(18)O values of CO produced by decomposition of precipitated BaSO(4) in a carbon reactor may be either too low or too high, depending on the relative concentrations of SO(4) (2-) and NO(3) (-) and the delta(18)O values of the H(2)O, NO(3) (-), and SO(4) (2-). Typical delta(18)O errors are of the order of 0.5 to 1 per thousand in many sample types, and can be larger in samples containing atmospheric NO(3) (-), which can cause similar errors in delta(17)O and Delta(17)O. These errors can be reduced by (1) ion chromatographic separation of SO(4) (2-) from NO(3) (-), (2) increasing the salinity of the solutions before precipitating BaSO(4) to minimize incorporation of H(2)O, (3) heating BaSO(4) under vacuum to remove H(2)O, (4) preparing isotopic reference materials as aqueous samples to mimic the conditions of the samples, and (5) adjusting measured delta(18)O values based on amounts and isotopic compositions of coexisting H(2)O and NO(3) (-). These procedures are demonstrated for SO(4) (2-) isotopic reference materials, synthetic solutions with isotopically known reagents, atmospheric deposition from Shenandoah National Park, Virginia, USA, and sulfate salt deposits from the Atacama Desert, Chile, and Mojave Desert, California, USA. These results have implications for the calibration and use of O isotope data in studies of SO(4) (2-) sources and reaction mechanisms.

  18. Effects of nitrate and water on the oxygen isotopic analysis of barium sulfate precipitated from water samples

    USGS Publications Warehouse

    Hannon, J.E.; Böhlke, J.K.; Mroczkowski, S.J.

    2008-01-01

    BaSO4 precipitated from mixed salt solutions by common techniques for SO42- isotopic analysis may contain quantities of H2O and NO3- that introduce errors in O isotope measurements. Experiments with synthetic solutions indicate that ??18O values of CO produced by decomposition of precipitated BaSO4 in a carbon reactor may be either too low or too high, depending on the relative concentrations of SO42- and NO3- and the ??18O values of the H2O, NO3-, and SO42-. Typical ??18O errors are of the order of 0.5 to 1??? in many sample types, and can be larger in samples containing atmospheric NO 3-, which can cause similar errors in ?? 17O and ??17O. These errors can be reduced by (1) ion chromatographic separation of SO42- from NO 3-, (2) increasing the salinity of the solutions before precipitating BaSO4 to minimize incorporation of H2O, (3) heating BaSO4 under vacuum to remove H2O, (4) preparing isotopic reference materials as aqueous samples to mimic the conditions of the samples, and (5) adjusting measured ??18O values based on amounts and isotopic compositions of coexisting H2O and NO 3-. These procedures are demonstrated for SO 42- isotopic reference materials, synthetic solutions with isotopically known reagents, atmospheric deposition from Shenandoah National Park, Virginia, USA, and sulfate salt deposits from the Atacama Desert, Chile, and Mojave Desert, California, USA. These results have implications for the calibration and use of O isotope data in studies of SO42- sources and reaction mechanisms.

  19. Environmental Immunoassays: Alternative Techniques for Soil and Water Analysis

    USGS Publications Warehouse

    Aga, D.S.; Thurman, E.M.

    1996-01-01

    Analysis of soil and water samples for environmental studies and compliance testing can be formidable, time consuming, and costly. As a consequence, immunochemical techniques have become popular for environmental analysis because they are reliable, rapid, and cost effective. During the past 5 years, the use of immunoassays for environmental monitoring has increased substantially, and their use as an integral analytical tool in many environmental laboratories is now commonplace. This chapter will present the basic concept of immunoassays, recent advances in the development of immunochemical methods, and examples of successful applications of immunoassays in environmental analysis.

  20. Cadmium sulfate application to sludge-amended soils: III. Relationship between treatment and plant available cadmium, zinc, and manganese. [Beta vulgaris, Zea mays

    SciTech Connect

    Mahler, R.J. ); Ryan, J.A. )

    1988-01-01

    Swiss chard (Beta vulgaris var. cicla) and corn (Zea mays L.) were used as biological indicators of Cd, Zn, and Mn availability in 12 soils amended with and without sludge, CdSO{sub 4} and CaCO{sub 3}. Soil Cd, Zn and Mn were partitioned into six fractions: soluble, exchangeable, adsorbed, organically bound, carbonate bound and sulfide bound, by the use of H{sub 2}O, KNO{sub 3}, H{sub 2}O, NaOH, EDTA and HNO{sub 3}, respectively. The data indicate that the major portion of total Cd was found in the carbonate, residual and organic fractions. Addition of CaCO{sub 3} caused an increase in the soluble and exchangeable fractions of Cd in the soils. The concentrations of Cd in the saturation extracts of the limed soils were significantly greater than those of the unlimed soils; however, this was not reflected in greater plant uptake of Cd from limed soils.

  1. Forensic Comparison of Soil Samples Using Nondestructive Elemental Analysis.

    PubMed

    Uitdehaag, Stefan; Wiarda, Wim; Donders, Timme; Kuiper, Irene

    2016-12-01

    Soil can play an important role in forensic cases in linking suspects or objects to a crime scene by comparing samples from the crime scene with samples derived from items. This study uses an adapted ED-XRF analysis (sieving instead of grinding to prevent destruction of microfossils) to produce elemental composition data of 20 elements. Different data processing techniques and statistical distances were evaluated using data from 50 samples and the log-LR cost (Cllr ). The best performing combination, Canberra distance, relative data, and square root values, is used to construct a discriminative model. Examples of the spatial resolution of the method in crime scenes are shown for three locations, and sampling strategy is discussed. Twelve test cases were analyzed, and results showed that the method is applicable. The study shows how the combination of an analysis technique, a database, and a discriminative model can be used to compare multiple soil samples quickly.

  2. Analysis of environmental soil samples for aromatic amines

    SciTech Connect

    Pace, C.M.; Donnelly, J.R.; Brumley, W.C.; Sovocool, G.W.

    1995-12-31

    To support a goal of the USEPA Characterization Research Division in Las Vegas, a rapid HPLC/UV of fluorescence method was developed for ppb levels of aromatic amines in soils. Existing methods were either designed for water, or gave poor and variable recoveries in soils. Both fast, reversible reactions and slow, irreversible reactions of these amines are reported to occur with the humic materials in the soil. The method involved sonication of 2 g soil with 1% NH4 OH/CH{sub 3}CN for 2 hours, centrifuging 30 min, adding 3 mL extract to 7 mL 0.01 M NH{sub 4}OAc, filtering, transferring through an acrodisc for HPLC analysis with gradient elution from 70% 0.01M NH{sub 4}OAc, 30% CH{sub 3}CN to 100% CH{sub 3}CN over 17 min; hold 3.5 min. The analytical method provided reproducible recoveries from both sand and humic-containing soils (e.g., 70-99% on {beta}-naphthylamine and 72-96% on 4-nitroaniline, spiked at 1 ppm). The method detection limits ranged from 1 ppb for {beta}-naphthyl-amine to 1 ppm for pyridines. HPLC analysis used ultraviolet, fluorescence and mass spectrometric detectors. Notice: The US Environmental Protection Agency (EPA), through its Office of Research and Development (ORD), partially funded and collaborated in the research described in this abstract for a proposed poster. It does not necessarily reflect the views of the EPA or ORD.

  3. Sulfate-reducing bacteria mediate thionation of diphenylarsinic acid under anaerobic conditions.

    PubMed

    Guan, Ling; Shiiya, Ayaka; Hisatomi, Shihoko; Fujii, Kunihiko; Nonaka, Masanori; Harada, Naoki

    2015-02-01

    Diphenylarsinic acid (DPAA) is often found as a toxic intermediate metabolite of diphenylchloroarsine or diphenylcyanoarsine that were produced as chemical warfare agents and were buried in soil after the World Wars. In our previous study Guan et al. (J Hazard Mater 241-242:355-362, 2012), after application of sulfate and carbon sources, anaerobic transformation of DPAA in soil was enhanced with the production of diphenylthioarsinic acid (DPTAA) as a main metabolite. This study aimed to isolate and characterize anaerobic soil microorganisms responsible for the metabolism of DPAA. First, we obtained four microbial consortia capable of transforming DPAA to DPTAA at a high transformation rate of more than 80% after 4 weeks of incubation. Sequencing for the bacterial 16S rRNA gene clone libraries constructed from the consortia revealed that all the positive consortia contained Desulfotomaculum acetoxidans species. In contrast, the absence of dissimilatory sulfite reductase gene (dsrAB) which is unique to sulfate-reducing bacteria was confirmed in the negative consortia showing no DPAA reduction. Finally, strain DEA14 showing transformation of DPAA to DPTAA was isolated from one of the positive consortia. The isolate was assigned to D. acetoxidans based on the partial 16S rDNA sequence analysis. Thionation of DPAA was also carried out in a pure culture of a known sulfate-reducing bacterial strain, Desulfovibrio aerotolerans JCM 12613(T). These facts indicate that sulfate-reducing bacteria are microorganisms responsible for the transformation of DPAA to DPTAA under anaerobic conditions.

  4. Grafting Sulfated Zirconia on Mesoporous Silica

    SciTech Connect

    Wang, Yong; Lee, Kwan Young; Choi, Saemin; Liu, Jun; Wang, Li Q.; Peden, Charles HF

    2007-06-01

    Sulfated zirconia has received considerable attention as a potential solid acid catalyst in recent years. In this paper, the preparation and properties of acid catalysts obtained by grafting ziconia with atomic precision on MCM-41 mesoporous silica were studied. TEM and potential titration characterizations revealed that ZrO2/MCM-41 with monolayer coverage can be obtained using this grafting technique. Sulfated ZrO2/MCM-41 exhibits improved thermal stability than that of bulk sulfated zirconia, as evidenced by temperature programmed characterizations and XRD analysis. Temperature programmed reaction of isopropanol was used to evaluate the acidity of sulfated ZrO2/MCM-41. It was found that the acid strength of sulfated ZrO2/MCM-41 with monolayer coverage is weaker than bulk sulfated zirconia but stronger than SiO2-Al2O3, a common strong acid catalyst.

  5. Ferrous Sulfate (Iron)

    MedlinePlus

    Ferrous sulfate provides the iron needed by the body to produce red blood cells. It is used to ... Ferrous sulfate comes as regular, coated, and extended-release (long-acting) tablets; regular and extended-release capsules; and ...

  6. Metagenomic Analysis of a Southern Maritime Antarctic Soil

    PubMed Central

    Pearce, David A.; Newsham, Kevin K.; Thorne, Michael A. S.; Calvo-Bado, Leo; Krsek, Martin; Laskaris, Paris; Hodson, Andy; Wellington, Elizabeth M.

    2012-01-01

    Our current understanding of Antarctic soils is derived from direct culture on selective media, biodiversity studies based on clone library construction and analysis, quantitative PCR amplification of specific gene sequences and the application of generic microarrays for microbial community analysis. Here, we investigated the biodiversity and functional potential of a soil community at Mars Oasis on Alexander Island in the southern Maritime Antarctic, by applying 454 pyrosequencing technology to a metagenomic library constructed from soil genomic DNA. The results suggest that the commonly cited range of phylotypes used in clone library construction and analysis of 78–730 OTUs (de-replicated to 30–140) provides low coverage of the major groups present (∼5%). The vast majority of functional genes (>77%) were for structure, carbohydrate metabolism, and DNA/RNA processing and modification. This study suggests that prokaryotic diversity in Antarctic terrestrial environments appears to be limited at the generic level, with Proteobacteria, Actinobacteria being common. Cyanobacteria were surprisingly under-represented at 3.4% of sequences, although ∼1% of the genes identified were involved in CO2 fixation. At the sequence level there appeared to be much greater heterogeneity, and this might be due to high divergence within the relatively restricted lineages which have successfully colonized Antarctic terrestrial environments. PMID:23227023

  7. Analysis of partitioning of organic compounds and proteins in aqueous polyethylene glycol-sodium sulfate aqueous two-phase systems in terms of solute-solvent interactions.

    PubMed

    da Silva, Nuno R; Ferreira, Luisa A; Madeira, Pedro P; Teixeira, José A; Uversky, Vladimir N; Zaslavsky, Boris Y

    2015-10-09

    Partition behavior of nine small organic compounds and six proteins was examined in poly(ethylene glycol)-8000-sodium sulfate aqueous two-phase systems containing 0.5M osmolyte (sorbitol, sucrose, trehalose, TMAO) and poly(ethylene glycol)-10000-sodium sulfate system, all in 0.01M sodium phosphate buffer, pH 6.8. The differences between the solvent properties of the coexisting phases (solvent dipolarity/polarizability, hydrogen bond donor acidity, and hydrogen bond acceptor basicity) were characterized with solvatochromic dyes using the solvatochromic comparison method. Differences between the electrostatic properties of the phases were determined by analysis of partitioning of sodium salts of dinitrophenylated (DNP-) amino acids with aliphatic alkyl side-chain. It was found out that the partition coefficient of all compounds examined (including proteins) may be described in terms of solute-solvent interactions. The results obtained in the study show that solute-solvent interactions of nonionic organic compounds and proteins in polyethylene glycol-sodium sulfate aqueous two-phase system differ from those in polyethylene glycol-dextran system.

  8. Comparative proteomic analysis of Desulfotomaculum reducens MI-1: Insights into the metabolic versatility of a gram-positive sulfate- and metal-reducing bacterium

    SciTech Connect

    Otwell, Anne E.; Callister, Stephen J.; Zink, Erika M.; Smith, Richard D.; Richardson, Ruth E.

    2016-02-19

    In this study, the proteomes of the metabolically versatile and poorly characterized Gram-positive bacterium Desulfotomaculum reducens MI-1 were compared across four cultivation conditions including sulfate reduction, soluble Fe(III) reduction, insoluble Fe(III) reduction, and pyruvate fermentation. Collectively across conditions, we observed at high confidence ~38% of genome-encoded proteins. Here, we focus on proteins that display significant differential abundance on conditions tested. To the best of our knowledge, this is the first full-proteome study focused on a Gram-positive organism cultivated either on sulfate or metal-reducing conditions. Several proteins with uncharacterized function encoded within heterodisulfide reductase (hdr)-containing loci were upregulated on either sulfate (Dred_0633-4, Dred_0689-90, and Dred_1325-30) or Fe(III)-citrate-reducing conditions (Dred_0432-3 and Dred_1778-84). Two of these hdr-containing loci display homology to recently described flavin-based electron bifurcation (FBEB) pathways (Dred_1325-30 and Dred_1778-84). Additionally, we propose that a cluster of proteins, which is homologous to a described FBEB lactate dehydrogenase (LDH) complex, is performing lactate oxidation in D. reducens (Dred_0367-9). Analysis of the putative sulfate reduction machinery in D. reducens revealed that most of these proteins are constitutively expressed across cultivation conditions tested. In addition, peptides from the single multiheme c-type cytochrome (MHC) in the genome were exclusively observed on the insoluble Fe(III) condition, suggesting that this MHC may play a role in reduction of insoluble metals.

  9. Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium.

    PubMed

    Otwell, Anne E; Callister, Stephen J; Zink, Erika M; Smith, Richard D; Richardson, Ruth E

    2016-01-01

    The proteomes of the metabolically versatile and poorly characterized Gram-positive bacterium Desulfotomaculum reducens MI-1 were compared across four cultivation conditions including sulfate reduction, soluble Fe(III) reduction, insoluble Fe(III) reduction, and pyruvate fermentation. Collectively across conditions, we observed at high confidence ~38% of genome-encoded proteins. Here, we focus on proteins that display significant differential abundance on conditions tested. To the best of our knowledge, this is the first full-proteome study focused on a Gram-positive organism cultivated either on sulfate or metal-reducing conditions. Several proteins with uncharacterized function encoded within heterodisulfide reductase (hdr)-containing loci were upregulated on either sulfate (Dred_0633-4, Dred_0689-90, and Dred_1325-30) or Fe(III)-citrate-reducing conditions (Dred_0432-3 and Dred_1778-84). Two of these hdr-containing loci display homology to recently described flavin-based electron bifurcation (FBEB) pathways (Dred_1325-30 and Dred_1778-84). Additionally, we propose that a cluster of proteins, which is homologous to a described FBEB lactate dehydrogenase (LDH) complex, is performing lactate oxidation in D. reducens (Dred_0367-9). Analysis of the putative sulfate reduction machinery in D. reducens revealed that most of these proteins are constitutively expressed across cultivation conditions tested. In addition, peptides from the single multiheme c-type cytochrome (MHC) in the genome were exclusively observed on the insoluble Fe(III) condition, suggesting that this MHC may play a role in reduction of insoluble metals.

  10. Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium

    PubMed Central

    Otwell, Anne E.; Callister, Stephen J.; Zink, Erika M.; Smith, Richard D.; Richardson, Ruth E.

    2016-01-01

    The proteomes of the metabolically versatile and poorly characterized Gram-positive bacterium Desulfotomaculum reducens MI-1 were compared across four cultivation conditions including sulfate reduction, soluble Fe(III) reduction, insoluble Fe(III) reduction, and pyruvate fermentation. Collectively across conditions, we observed at high confidence ~38% of genome-encoded proteins. Here, we focus on proteins that display significant differential abundance on conditions tested. To the best of our knowledge, this is the first full-proteome study focused on a Gram-positive organism cultivated either on sulfate or metal-reducing conditions. Several proteins with uncharacterized function encoded within heterodisulfide reductase (hdr)-containing loci were upregulated on either sulfate (Dred_0633-4, Dred_0689-90, and Dred_1325-30) or Fe(III)-citrate-reducing conditions (Dred_0432-3 and Dred_1778-84). Two of these hdr-containing loci display homology to recently described flavin-based electron bifurcation (FBEB) pathways (Dred_1325-30 and Dred_1778-84). Additionally, we propose that a cluster of proteins, which is homologous to a described FBEB lactate dehydrogenase (LDH) complex, is performing lactate oxidation in D. reducens (Dred_0367-9). Analysis of the putative sulfate reduction machinery in D. reducens revealed that most of these proteins are constitutively expressed across cultivation conditions tested. In addition, peptides from the single multiheme c-type cytochrome (MHC) in the genome were exclusively observed on the insoluble Fe(III) condition, suggesting that this MHC may play a role in reduction of insoluble metals. PMID:26925055

  11. Mercury Source Zone Identification using Soil Vapor Sampling and Analysis

    SciTech Connect

    Watson, David B; Miller, Carrie L; Lester, Brian P; Lowe, Kenneth Alan; Southworth, George R; Bogle, Mary Anna; Liang, Liyuan; Pierce, Eric M

    2014-01-01

    Development and demonstration of reliable measurement techniqes that can detect and help quantify the nature and extent of elemental mercury (Hg(0)) in the subsurface are needed to reduce certainties in the decision making process and increase the effectiveness of remedial actions. We conducted field tests at the Y-12 National Security Complex (NSC) in Oak Ridge, TN, to determine if sampling and analysis of Hg(0) vapors in the shallow subsurface (<0.3 m depth) can be used to as an indicator of the location and extent of Hg(0) releases in the subsurface. We constructed a rigid PVC pushprobe assembly, which was driven into the ground. Soil gas samples were collected through a sealed inner tube of the assembly and analyzed immediately in the field with a Lumex and/or Jerome Hg(0) analyzer. Time-series sampling showed that Hg vapor concentrations were fairly stable over time suggesting that the vapor phase Hg(0) was not being depleted and that sampling results were not dependent on the soil gas purge volume. Hg(0) vapor data collected at over 200 pushprobe locations at 3 different release sites correlated well to areas of known Hg(0) contamination. Vertical profiling of Hg(0) vapor concentrations conducted at 2 locations provided information on the vertical distribution of Hg(0) contamination in the subsurface. We concluded from our studies that soil gas sampling and analysis can be conducted rapidly and inexpensively at a large scale to help identify areas contaminated with Hg(0).

  12. Mineral exploration and soil analysis using in situ neutron activation

    USGS Publications Warehouse

    Senftle, F.E.; Hoyte, A.F.

    1966-01-01

    A feasibility study has been made to operate by remote control an unshielded portable positive-ion accelerator type neutron source to induce activities in the ground or rock by "in situ" neutron irradiation. Selective activation techniques make it possible to detect some thirty or more elements by irradiating the ground for periods of a few minutes with either 3-MeV or 14-MeV neutrons. The depth of penetration of neutrons, the effect of water content of the soil on neutron moderation, gamma ray attenuation in the soil and other problems are considered. The analysis shows that, when exploring for most elements of economic interest, the reaction 2H(d,n)3He yielding ??? 3-MeV neutrons is most practical to produce a relatively uniform flux of neutrons of less than 1 keV to a depth of 19???-20???. Irradiation with high energy neutrons (??? 14 MeV) can also be used and may be better suited for certain problems. However, due to higher background and lower sensitivity for the heavy minerals, it is not a recommended neutron source for general exploration use. Preliminary experiments have been made which indicate that neutron activation in situ is feasible for a mineral exploration or qualititative soil analysis. ?? 1976.

  13. Soil sample preparation using microwave digestion for uranium analysis

    SciTech Connect

    MOHAGHEGHI,AMIR H.; PRESTON,ROSE; AKBARZADEH,MANSOOR; BAKHTIAR,STEVEN

    2000-04-05

    A new sample preparation procedure has been developed for digestion of soil samples for uranium analysis. The technique employs a microwave oven digestion system to digest the sample and to prepare it for separation chemistry and analysis. The method significantly reduces the volume of acids used, eliminates a large fraction of acid vapor emissions, and speeds up the analysis time. The samples are analyzed by four separate techniques: Gamma Spectrometry, Alpha Spectroscopy using the open digestion method, Kinetic Phosphorescence Analysis (KPA) using open digestion, and KPA by Microwave digestion technique. The results for various analytical methods are compared and used to confirm the validity of the new procedure. The details of the preparation technique along with its benefits are discussed.

  14. Survival time analysis of least killifish (Heterandria formosa) and mosquitofish (Gambusia affinis) in acute exposures to endosulfan sulfate.

    PubMed

    Carriger, John F; Hoang, Tham C; Rand, Gary M

    2010-05-01

    Single-species flow-through toxicity tests were conducted to determine the times-to-death of two indigenous fish to South Florida--least killifish (Heterandria formosa) and mosquitofish (Gambusia affinis)--from acute exposure to endosulfan sulfate. Mortalities were recorded within 8-h periods from test initiation to termination at 96 h. The 96-h LC(50)s for least killifish and mosquitofish estimated using the trimmed-Spearman-Karber method were 2.0 and 2.3 microg/l, respectively. An accelerated failure time model was used to estimate times to death at selected concentrations. Data were fit to log-normal, log-logistic, and Weibull distributions. Acute toxicity data fit to the Weibull distribution produced a better relative fit than log-normal or log-logistic distributions for both toxicity tests. The survival-time profiles and associated statistics illustrate the benefit of considering exposure duration as well as concentration when predicting acute risk to species' populations. Both toxicity tests had similar outcomes from exposure to endosulfan sulfate, with least killifish being slightly more likely to die at lower concentrations and shorter time periods than mosquitofish. From the models generated by the toxicity tests, times-to-death for least killifish and mosquitofish were estimated for environmentally relevant concentrations of total endosulfan at a site of concern in South Florida. When the results from the current toxicity tests were compared to environmental concentrations from previous screening-level ecological risk assessments, the durations necessary to potentially kill 10% or more of the populations of the two native south Florida fish species were estimated to be 77 and 96 h for least killifish and mosquitofish, respectively. However, the exposure values included the alpha and beta isomers as well as endosulfan sulfate; therefore, an understanding of their toxicity might be important in understanding the survival dynamics of fish species in

  15. Genome analysis of Desulfotomaculum gibsoniae strain Groll(T) a highly versatile Gram-positive sulfate-reducing bacterium.

    PubMed

    Kuever, Jan; Visser, Michael; Loeffler, Claudia; Boll, Matthias; Worm, Petra; Sousa, Diana Z; Plugge, Caroline M; Schaap, Peter J; Muyzer, Gerard; Pereira, Ines A C; Parshina, Sofiya N; Goodwin, Lynne A; Kyrpides, Nikos C; Detter, Janine; Woyke, Tanja; Chain, Patrick; Davenport, Karen W; Rohde, Manfred; Spring, Stefan; Klenk, Hans-Peter; Stams, Alfons J M

    2014-06-15

    Desulfotomaculum gibsoniae is a mesophilic member of the polyphyletic spore-forming genus Desulfotomaculum within the family Peptococcaceae. This bacterium was isolated from a freshwater ditch and is of interest because it can grow with a large variety of organic substrates, in particular several aromatic compounds, short-chain and medium-chain fatty acids, which are degraded completely to carbon dioxide coupled to the reduction of sulfate. It can grow autotrophically with H2 + CO2 and sulfate and slowly acetogenically with H2 + CO2, formate or methoxylated aromatic compounds in the absence of sulfate. It does not require any vitamins for growth. Here, we describe the features of D. gibsoniae strain Groll(T) together with the genome sequence and annotation. The chromosome has 4,855,529 bp organized in one circular contig and is the largest genome of all sequenced Desulfotomaculum spp. to date. A total of 4,666 candidate protein-encoding genes and 96 RNA genes were identified. Genes of the acetyl-CoA pathway, possibly involved in heterotrophic growth and in CO2 fixation during autotrophic growth, are present. The genome contains a large set of genes for the anaerobic transformation and degradation of aromatic compounds, which are lacking in the other sequenced Desulfotomaculum genomes.

  16. Evaluating zinc isotope fractionation under sulfate reducing conditions using a flow-through cell and in situ XAS analysis

    NASA Astrophysics Data System (ADS)

    Jamieson-Hanes, Julia H.; Shrimpton, Heather K.; Veeramani, Harish; Ptacek, Carol J.; Lanzirotti, Antonio; Newville, Matthew; Blowes, David W.

    2017-04-01

    A flow-through cell experiment was conducted to evaluate Zn isotope fractionation during ZnS precipitation under microbially-mediated sulfate-reducing conditions. Synthetic groundwater containing 0.90 mM Zn was pumped through a cell containing creek sediment that was biostimulated to promote sulfate reducing conditions. Real-time, in situ X-ray absorption spectroscopy (XAS) was applied at the Zn K-edge to collect spectra via a Kapton® window in the front of the cell over the course of the experiment. Aqueous effluent samples were collected and analysed to determine concentrations of anions and cations, and Zn isotope ratios. The flow rate was increased step-wise during the experiment to modify the residence time and produce changes in the extent of sulfate reduction, which in turn controlled the extent of ZnS precipitation. Greater enrichment in the heavier isotope in the aqueous phase relative to the input solution was associated with more extensive Zn removal. A Rayleigh curve was fit to the isotope data, where ε = -0.27 ± 0.06‰ (2σ). Evaluation of Zn isotope fractionation under controlled flow conditions is critical to improve the efficacy of this powerful analytical technique when applied to natural systems or remediation projects in the field.

  17. Crystallization and preliminary X-ray analysis of chondroitin sulfate ABC lyases I and II from Proteus vulgaris.

    PubMed

    Huang, W; Matte, A; Suzuki, S; Sugiura, N; Miyazono, H; Cygler, M

    2000-07-01

    Chondroitin sulfate ABC lyases (E.C. 4.2.2.4) are broad-specificity glycosaminoglycan-degrading enzymes. Their preferred substrates are chondroitin sulfate and dermatan sulfate, which are broken down to short oligosaccharides. Proteus vulgaris produces two such lyases, ABC lyase I and II, with molecular weights of 112-113 kDa. Diffraction-quality crystals of both enzymes have been obtained by the hanging-drop vapour-diffusion method. ABC lyase I crystallizes in space group P2(1)2(1)2(1), with unit-cell parameters a = 49.3, b = 95.1, c = 230.0 A, Z = 4, and diffracts to 1.9 A resolution. Crystals of ABC lyase II belong to space group P1, with unit-cell parameters a = 64.2, b = 64.3, c = 142.1 A, alpha = 95.7, beta = 98. 1, gamma = 95.5 degrees, Z = 2; diffraction extends to at least 2.1 A.

  18. Direct determination of motional spectral densities for lithium dodecyl sulfate micellar dynamics from analysis of 13C 2H scalar relaxation

    NASA Astrophysics Data System (ADS)

    Stilbs, Peter; Söderman, Olle; Walderhaug, harald

    The motional spectral densities, J( ω0) and J(2 ω0) are extracted directly from a bandshape analysis of the 13C signal of a deuterated methylene group of a surfactant, Li dodecyl sulfate, residing in a micelle. The extracted spectral densities are then compared with spectral densities calculated using a motional model, the so-called "two-step model," for methylene segments of aggregated surfactants. The two sets of spectral densities agree within the experimental uncertainty. Thus, the two-step model is a reasonable description of NMR relaxation in micellar systems.

  19. Sulfate in fetal development.

    PubMed

    Dawson, Paul A

    2011-08-01

    Sulfate (SO(4)(2-)) is an important nutrient for human growth and development, and is obtained from the diet and the intra-cellular metabolism of sulfur-containing amino acids, including methionine and cysteine. During pregnancy, fetal tissues have a limited capacity to produce sulfate, and rely on sulfate obtained from the maternal circulation. Sulfate enters and exits placental and fetal cells via transporters on the plasma membrane, which maintain a sufficient intracellular supply of sulfate and its universal sulfonate donor 3'-phosphoadenosine 5'-phosphosulfate (PAPS) for sulfate conjugation (sulfonation) reactions to function effectively. Sulfotransferases mediate sulfonation of numerous endogenous compounds, including proteins and steroids, which biotransforms their biological activities. In addition, sulfonation of proteoglycans is important for maintaining normal structure and development of tissues, as shown for reduced sulfonation of cartilage proteoglycans that leads to developmental dwarfism disorders and four different osteochondrodysplasias (diastrophic dysplasia, atelosteogenesis type II, achondrogenesis type IB and multiple epiphyseal dysplasia). The removal of sulfate via sulfatases is an important step in proteoglycan degradation, and defects in several sulfatases are linked to perturbed fetal bone development, including mesomelia-synostoses syndrome and chondrodysplasia punctata 1. In recent years, interest in sulfate and its role in developmental biology has expanded following the characterisation of sulfate transporters, sulfotransferases and sulfatases and their involvement in fetal growth. This review will focus on the physiological roles of sulfate in fetal development, with links to human and animal pathophysiologies.

  20. Detection of 'archaeological features' among reflectance spectra of natural soils and archaeological soils using principal component analysis (PCA)

    NASA Astrophysics Data System (ADS)

    Choi, Yoon Jung; Lampel, Johannes; Jordan, David; Fiedler, Sabine; Wagner, Thomas

    2016-04-01

    Archaeological terminology 'soil-mark' refers to buried archaeological features being visible on the ground surface. Soil-marks have been identified by archaeologists based on their personal experience and knowledge. This study suggests a quantitative spectral analysis method to detect such archaeological features. This study identifies 'archaeological spectra' (reflectance spectra from surfaces containing archaeological materials) among various soil spectra using PCA (principal component analysis). Based on the results of the PCA, a difference (D) between the original spectrum and modified spectrum, which represents the principal component (PC) values of natural soils, can be determined. If the difference D between the two spectra is small, then the spectrum is similar to the spectral features of natural soils. If not, it identifies that the spectrum is more likely to be non-natural soil, probably an archaeological material. The method is applied on soil spectra from a prehistoric settlement site in Calabria, Italy. For the spectral range between 400 to 700nm, the difference value D for archaeological material ranges from 0.11 to 0.73 (the value varies depending on the number of PCs used). For natural soil, D ranges only from 0.04 to 0.09. The results shows D value is significantly larger for archaeological spectra, which indicates that the method can be applied to identify archaeological material among an unknown group of soil spectra, if a set of samples of natural soils exists. The study will present results of applying this method to various wavelength ranges and spectra from different sites. The major aim is to find optimised settings of the PCA method which can be applied in a universal way for identifying archaeological spectra.

  1. Crystal-Chemical Analysis of Soil at Rocknest, Gale Crater

    NASA Technical Reports Server (NTRS)

    Morrison, S. M.; Downs, R. T.; Blake, D. F.; Bish, D. L.; Ming, D. W.; Morris, R. V.; Yen, A. S.; Chipera, S. J.; Treiman, A. H.; Vaniman, D. T.; Gellert, R.; Achilles, C. N.; Rampe, E. B.; Bristow, T. F.; Crisp, J. A.; Sarrazin, P. C.; DesMarais, D. J.; Morookian, J. M.; Anderson, R. C.

    2013-01-01

    The CheMin instrument on the Mars Science Laboratory rover Curiosity performed X-ray diffraction analysis on Martian soil [1] at Rocknest in Gale Crater. In particular, crystalline phases from scoop 5 were identified and analyzed with the Rietveld method [2]. Refined unit-cell parameters are reported in Table 1. Comparing these unit-cell parameters with those in the literature provides an estimate of the chemical composition of the crystalline phases. For instance, Fig. 1 shows the Mg-content of Fa-Fo olivine as a function of the b unit-cell parameter using literature data. Our refined b parameter is indicated by the black triangle.

  2. [Factors affecting activation and transference of soil colloidal phosphorus and related analysis technologies].

    PubMed

    Zhao, Yue; Liang, Xin-qiang; Fu, Chao-dong; Zhu, Si-rui; Zhang, Yi-xiang; Ji, Yuan-jing

    2015-04-01

    Colloids play a key role in the transference process of phosphorus (P) in soil. Activation and transference of soil colloidal phosphorus have great effect on soil P pool and the surrounding water quality. This paper summarized the current studies on soil colloidal P, discussing the effects of the various factors (e. g., soil physical and chemical properties, fertilization, rainfall and soil amendments) on the transference of soil colloidal P. Some advanced analysis technologies (e.g., flow field-flow fractionation, transmission electron microscope-energy dispersive X-ray spectrometer, X-ray absorption near-edge structure and nuclear magnetic resonance) and methods of reducing soil colloidal P were also involved. This review would provide important information on the mechanism of soil colloidal P transference.

  3. Soil-plant-microbial relations in hydrothermally altered soils of Northern California

    USGS Publications Warehouse

    Blecker, S.W.; Stillings, L.L.; DeCrappeo, N.M.; Ippolito, J.A.

    2014-01-01

    Soils developed on relict hydrothermally altered soils throughout the Western USA present unique opportunities to study the role of geology on above and belowground biotic activity and composition. Soil and vegetation samples were taken at three unaltered andesite and three hydrothermally altered (acid-sulfate) sites located in and around Lassen VolcanicNational Park in northeastern California. In addition, three different types of disturbed areas (clearcut, thinned, and pipeline) were sampled in acid-sulfate altered sites. Soils were sampled (0–15 cm) in mid-summer 2010 from both under-canopy and between-canopy areas within each of the sites. Soils were analyzed for numerous physical and chemical properties along with soil enzyme assays, C and N mineralization potential, microbial biomass-C and C-substrate utilization. Field vegetation measurements consisted of canopy cover by life form (tree, shrub, forb, and grass), tree and shrub density, and above-ground net primary productivity of the understory. Overall, parameters at the clearcut sites were more similar to the unaltered sites, while parameters at the thinned and pipeline sites were more similar to the altered sites. We employed principal components analysis (PCA) to develop two soil quality indices (SQI) to help quantify the differences among the sites: one based on the correlation between soil parameters and canopy cover, and the second based on six sub-indices. Soil quality indices developed in these systems could provide a means for monitoring and identifying key relations between the vegetation, soils, and microorganisms.

  4. Particle size and X-ray analysis of Feldspar, Calvert, Ball, and Jordan soils

    NASA Technical Reports Server (NTRS)

    Chapman, R. S.

    1977-01-01

    Pipette analysis and X-ray diffraction techniques were employed to characterize the particle size distribution and clay mineral content of the feldspar, calvert, ball, and jordan soils. In general, the ball, calvert, and jordan soils were primarily clay size particles composed of kaolinite and illite whereas the feldspar soil was primarily silt-size particles composed of quartz and feldspar minerals.

  5. Analysis of Soluble Proteins in Natural Cordyceps sinensis from Different Producing Areas by Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis and Two-dimensional Electrophoresis

    PubMed Central

    Li, Chun-Hong; Zuo, Hua-Li; Zhang, Qian; Wang, Feng-Qin; Hu, Yuan-Jia; Qian, Zheng-Ming; Li, Wen-Jia; Xia, Zhi-Ning; Yang, Feng-Qing

    2017-01-01

    Background: As one of the bioactive components in Cordyceps sinensis (CS), proteins were rarely used as index components to study the correlation between the protein components and producing areas of natural CS. Objective: Protein components of 26 natural CS samples produced in Qinghai, Tibet, and Sichuan provinces were analyzed and compared to investigate the relationship among 26 different producing areas. Materials and Methods: Proteins from 26 different producing areas were extracted by Tris-HCl buffer with Triton X-100, and separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and two-dimensional electrophoresis (2-DE). Results: The SDS-PAGE results indicated that the number of protein bands and optical density curves of proteins in 26 CS samples was a bit different. However, the 2-DE results showed that the numbers and abundance of protein spots in protein profiles of 26 samples were obviously different and showed certain association with producing areas. Conclusions: Based on the expression values of matched protein spots, 26 batches of CS samples can be divided into two main categories (Tibet and Qinghai) by hierarchical cluster analysis. SUMMARY The number of protein bands and optical density curves of proteins in 26 Cordyceps sinensis samples were a bit different on the sodium dodecyl sulfate-polyacrylamide gel electrophoresis protein profilesNumbers and abundance of protein spots in protein profiles of 26 samples were obvious different on two-dimensional electrophoresis mapsTwenty-six different producing areas of natural Cordyceps sinensis samples were divided into two main categories (Tibet and Qinghai) by Hierarchical cluster analysis based on the values of matched protein spots. Abbreviations Used: SDS-PAGE: Sodium dodecyl sulfate polyacrylamide gel electrophoresis, 2-DE: Two-dimensional electrophoresis, Cordyceps sinensis: CS, TCMs: Traditional Chinese medicines PMID:28250651

  6. Sulfation pathways in plants.

    PubMed

    Koprivova, Anna; Kopriva, Stanislav

    2016-11-25

    Plants take up sulfur in the form of sulfate. Sulfate is activated to adenosine 5'-phosphosulfate (APS) and reduced to sulfite and then to sulfide when it is assimilated into amino acid cysteine. Alternatively, APS is phosphorylated to 3'-phosphoadenosine 5'-phosphosulfate (PAPS), and sulfate from PAPS is transferred onto diverse metabolites in its oxidized form. Traditionally, these pathways are referred to as primary and secondary sulfate metabolism, respectively. However, the synthesis of PAPS is essential for plants and even its reduced provision leads to dwarfism. Here the current knowledge of enzymes involved in sulfation pathways of plants will be summarized, the similarities and differences between different kingdoms will be highlighted, and major open questions in the research of plant sulfation will be formulated.

  7. "Hot background" of the mobile inelastic neutron scattering system for soil carbon analysis.

    PubMed

    Kavetskiy, Aleksandr; Yakubova, Galina; Prior, Stephen A; Torbert, H Allen

    2016-01-01

    The problem of gamma spectrum peak identification arises when conducting soil carbon analysis using the inelastic neutron scattering (INS) system. Some spectral peaks could be associated with radioisotopes appearing due to neutron activation of both the measurement system and soil samples. The investigation of "hot background" gamma spectra from the construction materials, whole measurement system, and soil samples over time showed that activation of (28)Al isotope can contribute noticeable additions to the soil neutron stimulated gamma spectra.

  8. [Cloning and diversity analysis of microorganism genes from alkalescence soil].

    PubMed

    Hu, Ting-Ting; Jiang, Cheng-Jian; Liang, Xuan; Long, Wen-Jie; Wu, Bo

    2006-10-01

    The metagenomic DNAs were extracted and purified from alkalescence environmental samples directly. On the basis of the metagenomic DNA, the alkaline soil 16S rDNA library composed of 5,562 positive clones was constructed. The phylogenic tree indicated that the bacteria from the alkaline soils were bio-diversity. The metagenomic DNA library named AL01 was constructed by inserting restriction fragments of the purified DNAs into plasmids pGEM-3Zf(+) vector. This library contained 23,650 positive clones and the average foreign DNA fragments were about 3.2 kb. The length of the library covered 75.68 Mb. The efficiency of the metagenomic library was approximately 6,000 clones from 1g dry soil samples. After screening AL01 DNA library with the screening tactics of enzymes, we confirmed that a positive clone, designated pGXAA2011, contained an alkaline protease gene AP01. Enzymatic analysis proved that its reaction optimum pH was 9.5 and the optimum temperature was 40 degrees C. Furthermore, a clone, designated pGXAG142 was screened from metagenomic DNA library, which expresses beta-glucosidase. DNA sequence indicated that the potential ORF of pGXAG142, which was named unglu01, there was no DNA or amino acids identity with the known beta-glucosidase genes in the Genbank. The integrated ORF was cloned into pETBlue-2 vector and was then transformed into Tuner(DE3)pLacI. The recombinant expression clone could express beta-glucosidase on the screening plate clearly and the analysis of SDS-PAGE indicated that the target protein was about 29 kDa.

  9. Di-sulfated Keratan Sulfate as a Novel Biomarker for Mucopolysaccharidosis II, IVA, and IVB.

    PubMed

    Shimada, Tsutomu; Tomatsu, Shunji; Mason, Robert W; Yasuda, Eriko; Mackenzie, William G; Hossain, Jobayer; Shibata, Yuniko; Montaño, Adriana M; Kubaski, Francyne; Giugliani, Roberto; Yamaguchi, Seiji; Suzuki, Yasuyuki; Orii, Kenji E; Fukao, Toshiyuki; Orii, Tadao

    2015-01-01

    Keratan sulfate (KS) is a storage material in mucopolysaccharidosis IV (MPS IV). However, no detailed analysis has been reported on subclasses of KS: mono-sulfated KS and di-sulfated KS. We established a novel method to distinguish and quantify mono- and di-sulfated KS using liquid chromatography-tandem mass spectrometry and measured both KS levels in various specimens.Di-sulfated KS was dominant in shark cartilage and rat serum, while mono-sulfated KS was dominant in bovine cornea and human serum. Levels of both mono- and di-sulfated KS varied with age in the blood and urine from control subjects and patients with MPS II and IVA. The mean levels of both forms of KS in the plasma/serum from patients with MPS II, IVA, and IVB were elevated compared with that in age-matched controls. Di-sulfated KS provided more significant difference between MPS IVA and the age-matched controls than mono-sulfated KS. The ratio of di-sulfated KS to total KS in plasma/serum increased with age in control subjects and patients with MPS II but was age independent in MPS IVA patients. Consequently, this ratio can discriminate younger MPS IVA patients from controls. Levels of mono- and di-sulfated KS in urine of MPS IVA and IVB patients were all higher than age-matched controls for all ages studied.In conclusion, the level of di-sulfated KS and its ratio to total KS can distinguish control subjects from patients with MPS II, IVA, and IVB, indicating that di-sulfated KS may be a novel biomarker for these disorders.

  10. Heparan Sulfate Proteoglycans

    PubMed Central

    Sarrazin, Stephane; Lamanna, William C.; Esko, Jeffrey D.

    2011-01-01

    Heparan sulfate proteoglycans are found at the cell surface and in the extracellular matrix, where they interact with a plethora of ligands. Over the last decade, new insights have emerged regarding the mechanism and biological significance of these interactions. Here, we discuss changing views on the specificity of protein–heparan sulfate binding and the activity of HSPGs as receptors and coreceptors. Although few in number, heparan sulfate proteoglycans have profound effects at the cellular, tissue, and organismal level. PMID:21690215

  11. Analysis of U.S. soil lead (Pb) studies from 1970 to 2012.

    PubMed

    Datko-Williams, Laura; Wilkie, Adrien; Richmond-Bryant, Jennifer

    2014-01-15

    Although lead (Pb) emissions to the air have substantially decreased in the United States since the phase-out of leaded gasoline by 1995, amounts of lead in some soils remain elevated. Lead concentrations in residential and recreational soils are of concern because health effects have been associated with Pb exposure. Elevated soil Pb is especially harmful to young children due to their higher likelihood of soil ingestion. The purpose of this study is to create a comprehensive compilation of U.S. soil Pb data published from 1970 through 2012 as well as to analyze the collected data to reveal spatial and/or temporal soil Pb trends in the U.S. over the past 40 years. A total of 84 soil Pb studies across 62 U.S. cities were evaluated. Median soil Pb values from the studies were analyzed with respect to year of sampling, residential location type (e.g., urban, suburban), and population density. In aggregate, there was no statistically significant correlation between year and median soil Pb; however, within single cities, soil Pb generally declined over time. Our analysis shows that soil Pb quantities in city centers were generally highest and declined towards the suburbs and exurbs of the city. In addition, there was a statistically significant, positive relationship between median soil Pb and population density. In general, the trends examined here align with previously reported conclusions that soil Pb levels are higher in larger urban areas and Pb tends to remain in soil for long periods of time.

  12. [Relationships between soil and rocky desertification in typical karst mountain area based on redundancy analysis].

    PubMed

    Long, Jian; Liao, Hong-Kai; Li, Juan; Chen, Cai-Yun

    2012-06-01

    Redundancy analysis (RDA) was employed to reveal the relationships between soil and rocky desertification through vegetation investigation and analysis of soil samples collected in typical karst mountain area of southwest Guizhou Province. The results showed that except TP, TK and ACa, all other variables including SOC, TN, MBC, ROC, DOC, available nutrients and basal respiration showed significant downward trends during the rocky desertification process. RDA results showed significant correlations between different types of desertification and soil variables, described as non-degraded > potential desertification > light desertification > moderate desertification > severe desertification. Moreover, RDA showed that using SOC, TN, AN, and BD as soil indicators, 74.4% of the variance information on soil and rocky desertification could be explained. Furthermore, the results of correlation analysis showed that soil variables were significantly affected by surface vegetation. Considering the ecological function of the aboveground vegetation and the soil quality, Zanthoxylum would be a good choice for restoration of local vegetation in karst mountain area.

  13. Bone sialoprotein II synthesized by cultured osteoblasts contains tyrosine sulfate

    SciTech Connect

    Ecarot-Charrier, B.; Bouchard, F.; Delloye, C. )

    1989-11-25

    Isolated mouse osteoblasts that retain their osteogenic activity in culture were incubated with (35S) sulfate. Two radiolabeled proteins, in addition to proteoglycans, were extracted from the calcified matrix of osteoblast cultures. All the sulfate label in both proteins was in the form of tyrosine sulfate as assessed by amino acid analysis and thin layer chromatography following alkaline hydrolysis. The elution behavior on DEAE-Sephacel of the major sulfated protein and the apparent Mr on sodium dodecyl sulfate gels were characteristic of bone sialoprotein II extracted from rat. This protein was shown to cross-react with an antiserum raised against bovine bone sialoprotein II, indicating that bone sialoprotein II synthesized by cultured mouse osteoblasts is a tyrosine-sulfated protein. The minor sulfated protein was tentatively identified as bone sialoprotein I or osteopontin based on its elution properties on DEAE-Sephacel and anomalous behavior on sodium dodecyl sulfate gels similar to those reported for rat bone sialoprotein I.

  14. Bone sialoprotein II synthesized by cultured osteoblasts contains tyrosine sulfate.

    PubMed

    Ecarot-Charrier, B; Bouchard, F; Delloye, C

    1989-11-25

    Isolated mouse osteoblasts that retain their osteogenic activity in culture were incubated with [35S] sulfate. Two radiolabeled proteins, in addition to proteoglycans, were extracted from the calcified matrix of osteoblast cultures. All the sulfate label in both proteins was in the form of tyrosine sulfate as assessed by amino acid analysis and thin layer chromatography following alkaline hydrolysis. The elution behavior on DEAE-Sephacel of the major sulfated protein and the apparent Mr on sodium dodecyl sulfate gels were characteristic of bone sialoprotein II extracted from rat. This protein was shown to cross-react with an antiserum raised against bovine bone sialoprotein II, indicating that bone sialoprotein II synthesized by cultured mouse osteoblasts is a tyrosine-sulfated protein. The minor sulfated protein was tentatively identified as bone sialoprotein I or osteopontin based on its elution properties on DEAE-Sephacel and anomalous behavior on sodium dodecyl sulfate gels similar to those reported for rat bone sialoprotein I.

  15. Shortwave radiative forcing, rapid adjustment, and feedback to the surface by sulfate geoengineering: analysis of the Geoengineering Model Intercomparison Project G4 scenario

    NASA Astrophysics Data System (ADS)

    Kashimura, Hiroki; Abe, Manabu; Watanabe, Shingo; Sekiya, Takashi; Ji, Duoying; Moore, John C.; Cole, Jason N. S.; Kravitz, Ben

    2017-03-01

    This study evaluates the forcing, rapid adjustment, and feedback of net shortwave radiation at the surface in the G4 experiment of the Geoengineering Model Intercomparison Project by analysing outputs from six participating models. G4 involves injection of 5 Tg yr-1 of SO2, a sulfate aerosol precursor, into the lower stratosphere from year 2020 to 2069 against a background scenario of RCP4.5. A single-layer atmospheric model for shortwave radiative transfer is used to estimate the direct forcing of solar radiation management (SRM), and rapid adjustment and feedbacks from changes in the water vapour amount, cloud amount, and surface albedo (compared with RCP4.5). The analysis shows that the globally and temporally averaged SRM forcing ranges from -3.6 to -1.6 W m-2, depending on the model. The sum of the rapid adjustments and feedback effects due to changes in the water vapour and cloud amounts increase the downwelling shortwave radiation at the surface by approximately 0.4 to 1.5 W m-2 and hence weaken the effect of SRM by around 50 %. The surface albedo changes decrease the net shortwave radiation at the surface; it is locally strong (˜ -4 W m-2) in snow and sea ice melting regions, but minor for the global average. The analyses show that the results of the G4 experiment, which simulates sulfate geoengineering, include large inter-model variability both in the direct SRM forcing and the shortwave rapid adjustment from change in the cloud amount, and imply a high uncertainty in modelled processes of sulfate aerosols and clouds.

  16. Comparative proteomic analysis of Desulfotomaculum reducens MI-1: Insights into the metabolic versatility of a gram-positive sulfate- and metal-reducing bacterium

    DOE PAGES

    Otwell, Anne E.; Callister, Stephen J.; Zink, Erika M.; ...

    2016-02-19

    In this study, the proteomes of the metabolically versatile and poorly characterized Gram-positive bacterium Desulfotomaculum reducens MI-1 were compared across four cultivation conditions including sulfate reduction, soluble Fe(III) reduction, insoluble Fe(III) reduction, and pyruvate fermentation. Collectively across conditions, we observed at high confidence ~38% of genome-encoded proteins. Here, we focus on proteins that display significant differential abundance on conditions tested. To the best of our knowledge, this is the first full-proteome study focused on a Gram-positive organism cultivated either on sulfate or metal-reducing conditions. Several proteins with uncharacterized function encoded within heterodisulfide reductase (hdr)-containing loci were upregulated on either sulfatemore » (Dred_0633-4, Dred_0689-90, and Dred_1325-30) or Fe(III)-citrate-reducing conditions (Dred_0432-3 and Dred_1778-84). Two of these hdr-containing loci display homology to recently described flavin-based electron bifurcation (FBEB) pathways (Dred_1325-30 and Dred_1778-84). Additionally, we propose that a cluster of proteins, which is homologous to a described FBEB lactate dehydrogenase (LDH) complex, is performing lactate oxidation in D. reducens (Dred_0367-9). Analysis of the putative sulfate reduction machinery in D. reducens revealed that most of these proteins are constitutively expressed across cultivation conditions tested. In addition, peptides from the single multiheme c-type cytochrome (MHC) in the genome were exclusively observed on the insoluble Fe(III) condition, suggesting that this MHC may play a role in reduction of insoluble metals.« less

  17. Fractal analysis of extra-embryonic vessels of chick embryos under the effect of glucosamine and chondroitin sulfates.

    PubMed

    de Souza Lins Borba, Fernanda Katharine; Felix, Giovanni Loos Queiroz; Costa, Edbhergue Ventura Lola; Silva, Lisie; Dias, Paulo Fernando; de Albuquerque Nogueira, Romildo

    2016-05-01

    Like heparan sulfate proteoglycans, some monosaccharides and glycosaminoglycans, such as sulfated glucosamine (GS) and chondroitin (CS), integrate the vascular extracellular matrix and may influence vascular endothelial cell growth. To assess the effects of these substances on blood vessel formation, we used the chick yolk sac membrane (YSM) model and fractal geometry quantification, which provided an objective in vivo method for testing potential agents that promote vasculogenesis and angiogenesis. An image processing method was developed to evaluate YSM capillary vessels after they were implanted in a methylcellulose disk of GS or CS at a concentration between 0.001-0.1mg/disk (performed on 2-day old embryos). This method resulted in a binary image of the microvascular network (white vessels on a black background). Fractal box-counting (DBC) and information (DINF) dimensions were used to quantify the activity of GS and CS in vasculogenesis and angiogenesis. YSM treated with GS (0.001-0.1mg) and CS (0.03-0.1mg) showed an increase in fractal dimensions that corresponded to vitelline vessel growth compared to the control group (vehicle), with GS displaying higher fractal dimension values.

  18. Potential Activity, Size, and Structure of Sulfate-Reducing Microbial Communities in an Exposed, Grazed and a Sheltered, Non-Grazed Mangrove Stand at the Red Sea Coast

    PubMed Central

    Balk, Melike; Keuskamp, Joost A.; Laanbroek, Hendrikus J.

    2015-01-01

    After oxygen, sulfate is the most important oxidant for the oxidation of organic matter in mangrove forest soils. As sulfate reducers are poor competitors for common electron donors, their relative success depends mostly on the surplus of carbon that is left by aerobic organisms due to oxygen depletion. We therefore hypothesized that sulfate-cycling in mangrove soils is influenced by the size of net primary production, and hence negatively affected by mangrove degradation and exploitation, as well as by carbon-exporting waves. To test this, we compared quantitative and qualitative traits of sulfate-reducing communities in two Saudi-Arabian mangrove stands near Jeddah, where co-occurring differences in camel-grazing pressure and tidal exposure led to a markedly different stand height and hence primary production. Potential sulfate reduction rates measured in anoxic flow-through reactors in the absence and presence of additional carbon sources were significantly higher in the samples from the non-grazed site. Near the surface (0–2 cm depth), numbers of dsrB gene copies and culturable cells also tended to be higher in the non-grazed sites, while these differences were not detected in the sub-surface (4–6 cm depth). It was concluded that sulfate-reducing microbes at the surface were indeed repressed at the low-productive site as could be expected from our hypothesis. At both sites, sulfate reduction rates as well as numbers of the dsrB gene copies and viable cells increased with depth suggesting repression of sulfate reduction near the surface in both irrespective of production level. Additionally, sequence analysis of DNA bands obtained from DGGE gels based on the dsrB gene, showed a clear difference in dominance of sulfate-reducing genera belonging to the Deltaproteobacteria and the Firmicutes between sampling sites and depths. PMID:26733999

  19. Stabilization and reuse of heavy metal contaminated soils by means of quicklime sulfate salt treatment. Final report, September 1992--February 1995

    SciTech Connect

    Dermatas, D.

    1995-08-01

    Capillary and hydraulic flows of water in porous media contaminated by heavy metal species often result in severe aquifer contamination. In the present study a chemical admixture stabilization approach is proposed, where heavy metal stabilization/immobilization is achieved by means of quicklime-based treatment. Both in-situ treatment by injection and on-site stabilization by excavation, mixing, and compaction will be investigated. In addition, the potential to reuse the resulting stabilized material as readily available construction material will also be investigated. The heavy metals under study include: arsenic, chromium, lead, and mercury. The proposed technical approach consists of three separate phases. During phase A, both artificial and naturally occurring contaminated soil mixes were treated, and then tested for stress-strain properties, leachability, micromorphology, mineralogical composition, permeability, setting time, and durability. In such a way, the effectiveness of the proposed remediation technology was verified, the treatment approach was optimized, and the underlying mechanisms responsible for stabilization were established. During phase B, the proposed technology will be tested for two DOE-site subscale systems, involving naturally occurring contaminated soil, using the same testing methodology as the one outlined for phase A. Provided that the proposed technology is proven effective for the subscale systems, a field application will be demonstrated. Again process quality monitoring will be performed by testing undisturbed samples collected from the treated sites, in the same fashion as for the previous phases. Following completion of the proposed study, a set of comprehensive guidelines for field applications will be developed. 42 refs., 196 figs., 26 tabs.

  20. Analysis of the life cycle of the soil saprophyte Bacillus cereus in liquid soil extract and in soil.

    PubMed

    Vilain, Sébastien; Luo, Yun; Hildreth, Michael B; Brözel, Volker S

    2006-07-01

    Bacillus is commonly isolated from soils, with organisms of Bacillus cereus sensu lato being prevalent. Knowledge of the ecology of B. cereus and other Bacillus species in soil is far from complete. While the older literature favors a model of growth on soil-associated organic matter, the current paradigm is that B. cereus sensu lato germinates and grows in association with animals or plants, resulting in either symbiotic or pathogenic interactions. An in terra approach to study soil-associated bacteria is described, using filter-sterilized soil-extracted soluble organic matter (SESOM) and artificial soil microcosms (ASM) saturated with SESOM. B. cereus ATCC 14579 displayed a life cycle, with the ability to germinate, grow, and subsequently sporulate in both the liquid SESOM extract and in ASM inserted into wells in agar medium. Cells grew in liquid SESOM without separating, forming multicellular structures that coalesced to form clumps and encasing the ensuing spores in an extracellular matrix. Bacillus was able to translocate from the point of inoculation through soil microcosms as shown by the emergence of outgrowths on the surrounding agar surface. Microscopic inspection revealed bundles of parallel chains inside the soil. The motility inhibitor L-ethionine failed to suppress outgrowth, ruling out translocation by a flagellar-mediated mechanism such as swimming or swarming. Bacillus subtilis subsp. subtilis Marburg and four Bacillus isolates taken at random from soils also displayed a life cycle in SESOM and ASM and were all able to translocate through ASM, even in presence of L-ethionine. These data indicate that B. cereus is a saprophytic bacterium that is able to grow in soil and furthermore that it is adapted to translocate by employing a multicellular mode of growth.

  1. No-tillage lessens soil CO2 emissions the most under arid and sandy soil conditions: results from a meta-analysis

    NASA Astrophysics Data System (ADS)

    Abdalla, K.; Chivenge, P.; Ciais, P.; Chaplot, V.

    2015-09-01

    The management of agroecosystems plays a crucial role in the global carbon cycle with soil tillage leading to known organic carbon redistributions within soils and changes in soil CO2 emissions. Yet, discrepancies exist on the impact of tillage on soil CO2 emissions and on the main soil and environmental controls. A meta-analysis was conducted using 46 peer-reviewed publications totaling 174 paired observations comparing CO2 emissions over entire seasons or years from tilled and untilled soils across different climates, crop types and soil conditions with the objective of quantifying tillage impact on CO2 emissions and assessing the main controls. On average, tilled soils emitted 21 % more CO2 than untilled soils, which corresponded to a significant difference at P < 0.05. The difference increased to 29 % in sandy soils from arid climates with low soil organic carbon content (SOCC < 1 %) and low soil moisture, but tillage had no impact on CO2 fluxes in clayey soils with high background SOCC (> 3 %). Finally, nitrogen fertilization and crop residue management had little effect on the CO2 responses of soils to no-tillage. These results suggest no-tillage is an effective mitigation measure of carbon dioxide losses from dry land soils. They emphasize the importance of including information on soil factors such as texture, aggregate stability and organic carbon content in global models of the carbon cycle.

  2. No-tillage lessens soil CO2 emissions the most under arid and sandy soil conditions: results from a meta-analysis

    NASA Astrophysics Data System (ADS)

    Abdalla, Khatab; Chivenge, Pauline; Ciais, Philippe; Chaplot, Vincent

    2016-06-01

    The management of agroecosystems plays a crucial role in the global carbon cycle with soil tillage leading to known organic carbon redistributions within soils and changes in soil CO2 emissions. Yet, discrepancies exist on the impact of tillage on soil CO2 emissions and on the main soil and environmental controls. A meta-analysis was conducted using 46 peer-reviewed publications totaling 174 paired observations comparing CO2 emissions over entire seasons or years from tilled and untilled soils across different climates, crop types and soil conditions with the objective of quantifying tillage impact on CO2 emissions and assessing the main controls. On average, tilled soils emitted 21 % more CO2 than untilled soils, which corresponded to a significant difference at P<0.05. The difference increased to 29 % in sandy soils from arid climates with low soil organic carbon content (SOCC < 1 %) and low soil moisture, but tillage had no impact on CO2 fluxes in clayey soils with high background SOCC (> 3 %). Finally, nitrogen fertilization and crop residue management had little effect on the CO2 responses of soils to no-tillage. These results suggest no-tillage is an effective mitigation measure of carbon dioxide losses from dry land soils. They emphasize the importance of including information on soil factors such as texture, aggregate stability and organic carbon content in global models of the carbon cycle.

  3. Temporal changes of soil physic-chemical properties at different soil depths during larch afforestation by multivariate analysis of covariance

    PubMed Central

    Wang, Hui-Mei; Wang, Wen-Jie; Chen, Huanfeng; Zhang, Zhonghua; Mao, Zijun; Zu, Yuan-Gang

    2014-01-01

    Soil physic-chemical properties differ at different depths; however, differences in afforestation-induced temporal changes at different soil depths are seldom reported. By examining 19 parameters, the temporal changes and their interactions with soil depth in a large chronosequence dataset (159 plots; 636 profiles; 2544 samples) of larch plantations were checked by multivariate analysis of covariance (MANCOVA). No linear temporal changes were found in 9 parameters (N, K, N:P, available forms of N, P, K and ratios of N: available N, P: available P and K: available K), while marked linear changes were found in the rest 10 parameters. Four of them showed divergent temporal changes between surface and deep soils. At surface soils, changing rates were 262.1 g·kg−1·year−1 for SOM, 438.9 mg·g−1·year−1 for C:P, 5.3 mg·g−1·year−1 for C:K, and −3.23 mg·cm−3·year−1 for bulk density, while contrary tendencies were found in deeper soils. These divergences resulted in much moderated or no changes in the overall 80-cm soil profile. The other six parameters showed significant temporal changes for overall 0–80-cm soil profile (P: −4.10 mg·kg−1·year−1; pH: −0.0061 unit·year−1; C:N: 167.1 mg·g−1·year−1; K:P: 371.5 mg·g−1 year−1; N:K: −0.242 mg·g−1·year−1; EC: 0.169 μS·cm−1·year−1), but without significant differences at different soil depths (P > 0.05). Our findings highlight the importance of deep soils in studying physic-chemical changes of soil properties, and the temporal changes occurred in both surface and deep soils should be fully considered for forest management and soil nutrient balance. PMID:24772281

  4. Temporal changes of soil physic-chemical properties at different soil depths during larch afforestation by multivariate analysis of covariance.

    PubMed

    Wang, Hui-Mei; Wang, Wen-Jie; Chen, Huanfeng; Zhang, Zhonghua; Mao, Zijun; Zu, Yuan-Gang

    2014-04-01

    Soil physic-chemical properties differ at different depths; however, differences in afforestation-induced temporal changes at different soil depths are seldom reported. By examining 19 parameters, the temporal changes and their interactions with soil depth in a large chronosequence dataset (159 plots; 636 profiles; 2544 samples) of larch plantations were checked by multivariate analysis of covariance (MANCOVA). No linear temporal changes were found in 9 parameters (N, K, N:P, available forms of N, P, K and ratios of N: available N, P: available P and K: available K), while marked linear changes were found in the rest 10 parameters. Four of them showed divergent temporal changes between surface and deep soils. At surface soils, changing rates were 262.1 g·kg(-1)·year(-1) for SOM, 438.9 mg·g(-1)·year(-1) for C:P, 5.3 mg·g(-1)·year(-1) for C:K, and -3.23 mg·cm(-3)·year(-1) for bulk density, while contrary tendencies were found in deeper soils. These divergences resulted in much moderated or no changes in the overall 80-cm soil profile. The other six parameters showed significant temporal changes for overall 0-80-cm soil profile (P: -4.10 mg·kg(-1)·year(-1); pH: -0.0061 unit·year(-1); C:N: 167.1 mg·g(-1)·year(-1); K:P: 371.5 mg·g(-1) year(-1); N:K: -0.242 mg·g(-1)·year(-1); EC: 0.169 μS·cm(-1)·year(-1)), but without significant differences at different soil depths (P > 0.05). Our findings highlight the importance of deep soils in studying physic-chemical changes of soil properties, and the temporal changes occurred in both surface and deep soils should be fully considered for forest management and soil nutrient balance.

  5. Evaluation of soil gas sampling and analysis techniques at a former petrochemical plant site.

    PubMed

    Hers, I; Li, L; Hannam, S

    2004-07-01

    Methods for soil gas sampling and analysis are evaluated as part of a research study on soil vapour intrusion into buildings, conducted at a former petro-chemical plant site ("Chatterton site"). The evaluation process was designed to provide information on reliability and selection of appropriate methods for soil gas sampling and analysis, and was based on a literature review of data and methods, and experiments completed as part of the research study. The broader context of this work is that soil gas characterization is increasingly being used for input into risk assessment of contaminated sites, particularly when evaluating the potential intrusion of soil vapour into buildings. There are only a limited number of research studies and protocols addressing soil gas sampling and analysis. There is significant variability in soil gas probe design and sample collection and analysis methods used by practitioners. The experimental studies conducted to evaluate soil gas methods address the permeation or leakage of gases from Tedlar bags, time-dependent sorption of volatile organic compound (VOC)-vapours onto probe surfaces and sampling devices, and analytical and quality control issues for light gas and VOC analyses. Through this work, common techniques for soil gas collection and analysis are described together with implications for data quality arising from the different methods used. Some of the potential pitfalls that can affect soil gas testing are identified, and recommendations and guidance for improved protocols are provided.

  6. Sampling soil-derived CO2 for analysis of isotopic composition: a comparison of different techniques.

    PubMed

    Bertolini, Teresa; Inglima, Ilaria; Rubino, Mauro; Marzaioli, Fabio; Lubritto, Carmine; Subke, Jens-Arne; Peressotti, Alessandro; Cotrufo, M Francesca

    2006-03-01

    A new system for soil respiration measurement [P. Rochette, L.B. Flanagan, E.G. Gregorich. Separating soil respiration into plant and soil components using analyses of the natural abundance of carbon-13. Soil Sci. Soc. Am. J., 63, 1207-1213 (1999).] was modified in order to collect soil-derived CO2 for stable isotope analysis. The aim of this study was to assess the suitability of this modified soil respiration system to determine the isotopic composition (delta13C) of soil CO2 efflux and to measure, at the same time, the soil CO2 efflux rate, with the further advantage of collecting only one air sample. A comparison between different methods of air collection from the soil was carried out in a laboratory experiment. Our system, as well as the other dynamic chamber approach tested, appeared to sample the soil CO2, which is enriched with respect to the soil CO2 efflux, probably because of a mass dependent fractionation during diffusion and because of the atmospheric contribution in the upper soil layer. On the contrary, the static accumulation of CO2 into the chamber headspace allows sampling of delta13C-CO2 of soil CO2 efflux.

  7. Quantification of soil mapping by digital analysis of LANDSAT data. [Clinton County, Indiana

    NASA Technical Reports Server (NTRS)

    Kirschner, F. R.; Kaminsky, S. A.; Hinzel, E. J.; Sinclair, H. R.; Weismiller, R. A.

    1977-01-01

    Soil survey mapping units are designed such that the dominant soil represents the major proportion of the unit. At times, soil mapping delineations do not adequately represent conditions as stated in the mapping unit descriptions. Digital analysis of LANDSAT multispectral scanner (MSS) data provides a means of accurately describing and quantifying soil mapping unit composition. Digital analysis of LANDSAT MSS data collected on 9 June 1973 was used to prepare a spectral soil map for a 430-hectare area in Clinton County, Indiana. Fifteen spectral classes were defined, representing 12 soil and 3 vegetation classes. The 12 soil classes were grouped into 4 moisture regimes based upon their spectral responses; the 3 vegetation classes were grouped into one all-inclusive class.

  8. A Meta-analysis of Timber Harvest and Site Preparation Effects on Soil Carbon Storage

    NASA Astrophysics Data System (ADS)

    Nave, L. E.; Swanston, C. S.; Vance, E. D.; Curtis, P. S.

    2008-12-01

    Management practices can dramatically alter soil carbon (C) storage in forests. Timber harvesting and site preparation are a widely employed and studied form of forest management, yet abundant experimental data from this area of research have not recently been synthesized. We are using meta-analysis to test a database developed from 86 studies with published soil C storage values for paired harvested and un- harvested forests, in order to identify how timber harvesting and site preparation affect soil C pool sizes. Most of the studies in the database are from coniferous or hardwood forests of the continental United States, although temperate forests of Asia, Australia, Canada, and Europe also are represented. We have identified factors that influence soil C responses to harvest at global to regional scales, and estimated soil C storage shifts in pools of different vulnerability. At the global scale, soil C storage changes due to harvest differ according to soil horizon, soil taxonomic order, and species composition. Within soil types and at regional scales, climate, species composition, and harvest and site preparation methods appear to have more significant effects on forest soil C storage. At all spatial scales, forest floors and surface mineral soils show different levels of vulnerability to C loss or increase, highlighting the importance of constraining turnover times for C incorporated into these two soil pools as efforts to model the C cycle improve. As part of a larger effort to understand how soil C pools are impacted by management and global change, our meta-analysis identifies opportunities for increased soil C storage, situations where soil C losses are highly probable, and areas requiring improved understanding of mechanisms of forest soil C accumulation and loss.

  9. Subcritical water extractor for Mars analog soil analysis.

    PubMed

    Amashukeli, Xenia; Grunthaner, Frank J; Patrick, Steven B; Yung, Pun To

    2008-06-01

    Abstract Technologies that enable rapid and efficient extraction of biomarker compounds from various solid matrices are a critical requirement for the successful implementation of in situ chemical analysis of the martian regolith. Here, we describe a portable subcritical water extractor that mimics multiple organic solvent polarities by tuning the dielectric constant of liquid water through adjustment of temperature and pressure. Soil samples, collected from the Yungay region of the Atacama Desert (martian regolith analogue) in the summer of 2005, were used to test the instrument's performance. The total organic carbon was extracted from the samples at concentrations of 0.2-55.4 parts per million. The extraction data were compared to the total organic carbon content in the bulk soil, which was determined via a standard analytical procedure. The instrument's performance was examined over the temperature range of 25-250 degrees C at a fixed pressure of 20.7 MPa. Under these conditions, water remains in a subcritical fluid state with a dielectric constant varying between approximately 80 (at 25 degrees C) and approximately 30 (at 250 degrees C).

  10. Analysis of modified wet-air oxidation for soil detoxification

    SciTech Connect

    Unterberg, W.; Willms, R.S.; Balinsky, A.M.; Reible, D.D.; Wetzel, D.M.

    1987-09-01

    This report presents the results of research on wet-air oxidation as a method for the destruction of hazardous wastes. For organics in the presence of large amounts of water, the water need not be vaporized during wet-air oxidation, an attractive characteristic for energy conservation. The feasibility of using wet-air oxidation was investigated in terms of the effects of temperature, pressure, and the presence or absence of soil on the oxidation rate of three model compounds. Wet-air oxidation is a semi-commercial process that has been used to treat a variety of weakly toxic chemical wastes and for the regeneration of activated carbon. In the study, wet-air oxidation research was carried out in a 1-liter batch reactor at temperatures from 130 to 275/sup 0/C and pressures from 703-1760 x 10/sup 3/ kg/sq m on three substances: m-xylene, tetrachloroethylene (TCE), and malathion, both with and without addition of soil. Any attempt to balance the effect of residence time and the cost of energy requires an accurate description of the oxidation kinetics for the compound or waste stream in question. Due to the sampling technique used during the investigation and the inherent nature of the wet-air oxidation process, a variety of potential problems with the interpretation and analysis of the raw concentration-time data were encountered during the study.

  11. Image analysis of dye stained patterns in soils

    NASA Astrophysics Data System (ADS)

    Bogner, Christina; Trancón y Widemann, Baltasar; Lange, Holger

    2013-04-01

    Quality of surface water and groundwater is directly affected by flow processes in the unsaturated zone. In general, it is difficult to measure or model water flow. Indeed, parametrization of hydrological models is problematic and often no unique solution exists. To visualise flow patterns in soils directly dye tracer studies can be done. These experiments provide images of stained soil profiles and their evaluation demands knowledge in hydrology as well as in image analysis and statistics. First, these photographs are converted to binary images classifying the pixels in dye stained and non-stained ones. Then, some feature extraction is necessary to discern relevant hydrological information. In our study we propose to use several index functions to extract different (ideally complementary) features. We associate each image row with a feature vector (i.e. a certain number of image function values) and use these features to cluster the image rows to identify similar image areas. Because images of stained profiles might have different reasonable clusterings, we calculate multiple consensus clusterings. An expert can explore these different solutions and base his/her interpretation of predominant flow mechanisms on quantitative (objective) criteria. The complete workflow from reading-in binary images to final clusterings has been implemented in the free R system, a language and environment for statistical computing. The calculation of image indices is part of our own package Indigo, manipulation of binary images, clustering and visualization of results are done using either build-in facilities in R, additional R packages or the LATEX system.

  12. Elemental Analysis of Soils by Laser Induced Breakdown Spectroscopy

    NASA Astrophysics Data System (ADS)

    Gondal, Mohammed Ashraf; Dastageer, Mohamed A.

    The chemical and elemental composition of soil is very complex as it contains many constituents like minerals, organic matters, living organisms, fossils, air and water. Considering the diversity of soil contents, quality and usability, a systematic scientific study on the elemental and chemical composition of soil is very important. In order to study the chemical composition of soil, Laser induced breakdown spectroscopy (LIBS) has been applied recently. The important features of LIBS system and its applications for the measurement of nutrients in green house soil, on-line monitoring of remediation process of chromium polluted soil, determination of trace elements in volcanic erupted soil samples collected from ancient cenozoic lava eruption sites and detection of toxic metals in Gulf war oil spill contaminated soil using LIBS are described in this chapter.

  13. 5'-MGB probes allow rapid identification of methanogens and sulfate reducers in cold marine sediments by real-time PCR and melting curve analysis.

    PubMed

    Afonina, Irina; Savvichev, Alexander; Ankoudinova, Irina; Mahoney, Walt

    2009-09-01

    The analysis of microorganism communities in uncultured environmental samples requires laborious and cumbersome techniques such as denaturing gradient gel electrophoresis of amplicons generated with 16S rRNA generic primers with subsequent fragment sequencing. We have developed a simple method for genus identification of methanogen archaea and sulfate-reducing bacteria based on a real-time PCR hybridization probe melting curve analysis. The method takes advantage of a recent explosion of microorganism sequencing data conveniently packaged in the Ribosomal Database Project. Specificity of detection is based on a genus-specific real-time PCR fluorescent 5'-MGB-probe melt. As the probes are designed to have destabilizing mismatches with undesired genera, only samples with a proper melting temperature are called positive.

  14. Analysis of Selected Enhancements for Soil Vapor Extraction

    DTIC Science & Technology

    1997-09-01

    VOCs or semivolatile organic compounds (SVOC) to enhance their removal via SVE or (2) dry soil to increase air permeability. Thermal enhancement ...Air sparging also oxygenates the groundwater and soils , thereby enhancing the potential for biodegradation at sites with contaminants that degrade...the soil , thus volatilizing organics in the soil . The blanket also acts as a surface seal. Down-the-hole heaters have also been used to enhance oil

  15. Proteomic analysis of acute responses to copper sulfate stress in larvae of the brine shrimp, Artemia sinica

    NASA Astrophysics Data System (ADS)

    Zhou, Qian; Wu, Changgong; Dong, Bo; Li, Fuhua; Liu, Fengqi; Xiang, Jianhai

    2010-03-01

    Proteomics was used to reveal the differential protein expression profiles of acute responses to copper sulfate exposure in larvae of Artemia sinica. Fourteen differentially displayed protein spots were detected and seven of them were identified. Three spots were up-expressed and identified: actin, heat shock protein 70, and chaperone subunit 1; three down-regulated proteins were identified: arginine kinase, elongation factor-2, and glycine-rich protein; and a newly expressed protein was identified as peroxiredoxin. The study indicates the involvement of all the differentially expressed proteins in the early responses of protein expression, and in the survival of A. sinica in the presence of copper and other heavy metals; the findings improve understanding of the organism’s adaptive responses and resistance.

  16. Analysis on Soil Seed Bank Diversity Characteristics and Its Relation with Soil Physical and Chemical Properties after Substrate Addition

    PubMed Central

    He, Mengxuan; Lv, Lingyue; Li, Hongyuan; Meng, Weiqing; Zhao, Na

    2016-01-01

    Aims Considered as an essential measure in the application of soil seed bank (SSB) projects, the mixing of substrate and surface soil can effectively improve soil condition. This research is aimed at exploring the diversity characteristics of SSBs and the relationships between SSBs and soil properties. Methods Canonical correspondence analysis (CCA) was adopted to describe the ordination of SSBs on soil properties’ gradients; multiple linear regressions were adopted to analyze the relationship between average growth height and soil properties, density and soil properties. Results Experimental groups of mixed substrate (the mixture of organic and inorganic substrates) had high diversity indexes, especially the Shannon-Wiener Index compared with those of single substrate. Meanwhile, a higher number of species and increased density were also noted in those of mixed substrate. The best test group, No.16, had the highest diversity indexes with a Shannon-Wiener of 1.898, Simpson of 0.633 and Pielou of 0.717, and also showed the highest density of 14000 germinants /m2 and 21 species. In addition, an improvement of the soil’s chemical and physical properties was noted when the substrates were mixed. The mixed substrate of turfy soil and perlite could effectively enhance the soil moisture content, whilst a mixed substrate of rice husk carbon and vermiculite could improve the content of available potassium (AK) and phosphorus (AP) and strengthen soil fertility. The germinated plants also reflected obvious regularities of ordination on soil factor gradients. Three distinct cluster groups were presented, of which the first cluster was distributed in an area with a relatively higher content of AK and AP; the second cluster was distributed at places with relatively higher soil moisture content; and the third cluster of plants didn’t show any obvious relationship with soil physical and chemical properties. Through CCA analysis, AK and AP were considered the most important

  17. Evaluation of PLS, LS-SVM, and LWR for quantitative spectroscopic analysis of soils

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soil testing requires the analysis of large numbers of samples in laboratory that are often time consuming and expensive. Mid-infrared spectroscopy (mid-IR) and near-infrared spectroscopy (NIRS) are fast, non-destructive, and inexpensive analytical methods that have been used for soil analysis, in l...

  18. Application of the pulsed fast/thermal neutron method for soil elemental analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soil science is a research field where physic concepts and experimental methods are widely used, particularly in agro-chemistry and soil elemental analysis. Different methods of analysis are currently available. The evolution of nuclear physics (methodology and instrumentation) combined with the ava...

  19. Homogenization of soil properties map by Principal Component Analysis

    NASA Astrophysics Data System (ADS)

    Valverde Arias, Omar; Garrido, Alberto; Villeta, Maria; Tarquis, Ana Maria

    2016-04-01

    It is widely known that extreme climatic phenomena occur with more intensity and frequency. This fact has put more pressure over farming, becoming very important to implement agriculture risk management policies by governments and institutions. One of the main strategies is transfer risk by agriculture insurance. Agriculture insurance based in indexes has gained importance in the last decade. And consist in a comparison between measured index values with a defined threshold that triggers damage losses. However, based index insurance could not be based on an isolated measurement. It is necessary to be integrated in a complete monitoring system that uses many sources of information and tools. For example, index influence areas, crop production risk maps, crop yields, claim statistics, and so on. To establish index influence area is necessary to have a secondary information that show us homogeneous climatic and soil areas, which inside of each homogeneous classes, index measurements on crops of interest are going to be similar, and in this way reduce basis risk. But it is necessary an efficient method to accomplish this aim, to get homogeneous areas that not depends on only in expert criteria and that could be widely used, for this reason this study asses two conventional agricultural and geographic methods (control and climatic maps) based in expert criteria, and one classical statistical method of multi-factorial analysis (factorial map), all of them to homogenize soil and climatic characteristics. Resulting maps were validated by agricultural and spatial analysis, obtaining very good results in statistical method (Factorial map) that proves to be an efficient and accuracy method that could be used for similar porpoises.

  20. Soil moisture trends in mountainous areas: a 50-yr analysis of modelled soil moisture over Sierra Nevada Mountains (Spain).

    NASA Astrophysics Data System (ADS)

    José Pérez-Palazón, María; Pimentel, Rafael; Herrero, Javier; José Polo, María

    2016-04-01

    Soil moisture conditions the energy and water fluxes through the ground surface and constitutes a major hydrological state variable in the analysis of environmental processes. Detecting potential changes in soil moisture and analyzing their trend over a long period of study can help to understand its evolution in other similar areas and to estimate its future role. In mountainous areas, the snow distribution highly conditions soil water content and its implications on the local water cycle. Sierra Nevada, Southern Spain, is a linear mountain range, with altitude higher than 3000 m.a.s.l., where Mediterranean and alpine climates coexist. The snow dynamics dominates the hydrological regime, and the medium and long term trends observed in the snow persistence constitute one of the main potential drivers for soil moisture changes both on a seasonal and annual basis. This work presents a 50-yr study of the soil moisture trends in Sierra Nevada (SN); the distributed monthly mean soil moisture evolution during the recent past (1960-2010) is simulated and its relationship with meteorological variables (precipitation and temperature) analyzed in the five head river basins that the SN area comprises. For this, soil water content is simulated throughout the area by means of WiMMed, a distributed and physically based hydrological model developed for Mediterranean regions that includes snow modelling, which had been previously calibrated and validated in the study area. The analysis of soil moisture shows a globally decreasing annual rate, with a mean value of 0.0011 mmṡmm-1ṡyear-1 during the study period averaged over the whole study area, which locally ranges between 0.174 mmṡmm-1ṡyear-1 and 0.0014 mmṡmm-1ṡyear-1. As previous studies reported, the observed trend in precipitation is more influent than temperature on the snowfall regime change; therefore, as expected, the estimated trends of soil moisture are more related to this variable. Moreover, an increase of

  1. Community structure analysis of soil ammonia oxidizers during vegetation restoration in southwest China.

    PubMed

    Liang, Yueming; He, Xunyang; Liang, Shichu; Zhang, Wei; Chen, Xiangbi; Feng, Shuzheng; Su, Yirong

    2014-03-01

    Soil ammonia oxidizers play a critical role in nitrogen cycling and ecological restoration. The composition and structure of soil ammonia oxidizers and their impacting factors were studied in four typical ecosystem soils, tussock (T), shrub (S), secondary forest (SF), and primary forest (PF), during vegetation restoration in the Karst region of Southwest China. The composition and structure of the ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) communities were characterized by sequencing the amoA and arch-amoA genes, respectively. The diversity of soil ammonia oxidizers (except in S) and plant Shannon diversity index gradually increased with vegetation restoration, and the ammonia oxidizer communities differed significantly (p < 0.001). Amplicons of AOA from the Nitrososphaera cluster dominated all four ecosystem soils. AOB Nitrosospira cluster 3b only appeared in PF and SF soils, while Nitrosospira cluster 3a species were found in all soils. Changes in AOB paralleled the changes in soil ammonium content that occurred with vegetation restoration. Redundancy analysis showed that the distribution of dominant AOB species was linked to pH, soil urease activity, and soil C/N ratio, whereas the distribution of dominant AOA species was mainly influenced by litter nitrogen content and C/N ratio. These results suggested that the composition and structure of the AOB community were more sensitive to changes in vegetation and soil ammonium content, and may be an important indicator of nitrogen availability in Karst ecosystem soils.

  2. Using soil function evaluation in multi-criteria decision analysis for sustainability appraisal of remediation alternatives.

    PubMed

    Volchko, Yevheniya; Norrman, Jenny; Rosén, Lars; Bergknut, Magnus; Josefsson, Sarah; Söderqvist, Tore; Norberg, Tommy; Wiberg, Karin; Tysklind, Mats

    2014-07-01

    Soil contamination is one of the major threats constraining proper functioning of the soil and thus provision of ecosystem services. Remedial actions typically only address the chemical soil quality by reducing total contaminant concentrations to acceptable levels guided by land use. However, emerging regulatory requirements on soil protection demand a holistic view on soil assessment in remediation projects thus accounting for a variety of soil functions. Such a view would require not only that the contamination concentrations are assessed and attended to, but also that other aspects are taking into account, thus addressing also physical and biological as well as other chemical soil quality indicators (SQIs). This study outlines how soil function assessment can be a part of a holistic sustainability appraisal of remediation alternatives using multi-criteria decision analysis (MCDA). The paper presents a method for practitioners for evaluating the effects of remediation alternatives on selected ecological soil functions using a suggested minimum data set (MDS) containing physical, biological and chemical SQIs. The measured SQIs are transformed into sub-scores by the use of scoring curves, which allows interpretation and the integration of soil quality data into the MCDA framework. The method is demonstrated at a study site (Marieberg, Sweden) and the results give an example of how soil analyses using the suggested MDS can be used for soil function assessment and subsequent input to the MCDA framework.

  3. Natural Variation in the ATPS1 Isoform of ATP Sulfurylase Contributes to the Control of Sulfate Levels in Arabidopsis1[W

    PubMed Central

    Koprivova, Anna; Giovannetti, Marco; Baraniecka, Patrycja; Lee, Bok-Rye; Grondin, Cécile; Loudet, Olivier; Kopriva, Stanislav

    2013-01-01

    Sulfur is an essential macronutrient for all living organisms. Plants take up inorganic sulfate from the soil, reduce it, and assimilate it into bioorganic compounds, but part of this sulfate is stored in the vacuoles. In our first attempt to identify genes involved in the control of sulfate content in the leaves, we reported that a quantitative trait locus (QTL) for sulfate content in Arabidopsis (Arabidopsis thaliana) was underlain by the APR2 isoform of the key enzyme of sulfate assimilation, adenosine 5′-phosphosulfate reductase. To increase the knowledge of the control of this trait, we cloned a second QTL from the same analysis. Surprisingly, the gene underlying this QTL encodes the ATPS1 isoform of the enzyme ATP sulfurylase, which precedes adenosine 5′-phosphosulfate reductase in the sulfate assimilation pathway. Plants with the Bay allele of ATPS1 accumulate lower steady-state levels of ATPS1 transcript than those with the Sha allele, which leads to lower enzyme activity and, ultimately, the accumulation of sulfate. Our results show that the transcript variation is controlled in cis. Examination of ATPS1 sequences of Bay-0 and Shahdara identified two deletions in the first intron and immediately downstream the gene in Bay-0 shared with multiple other Arabidopsis accessions. The average ATPS1 transcript levels are lower in these accessions than in those without the deletions, while sulfate levels are significantly higher. Thus, sulfate content in Arabidopsis is controlled by two genes encoding subsequent enzymes in the sulfate assimilation pathway but using different mechanisms, variation in amino acid sequence and variation in expression levels. PMID:24027241

  4. Long term analysis of PALS soil moisture campaign measurements for global soil moisture algorithm development

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An important component of satellite-based soil moisture algorithm development and validation is the comparison of coincident remote sensing and in situ observations that are typically provided by intensive field campaigns. The planned NASA Soil Moisture Active Passive (SMAP) mission has unique requi...

  5. Challenges in Bulk Soil Sampling and Analysis for Vapor Intrusion Screening of Soil

    EPA Science Inventory

    This draft Engineering Issue Paper discusses technical issues with monitoring soil excavations for VOCs and describes options for such monitoring as part of a VI pathway assessment at sites where soil excavation is being considered or used as part of the remedy for VOC-contaminat...

  6. A Brazilian soil hydraulic database and field capacity analysis

    NASA Astrophysics Data System (ADS)

    Luiza Lima Ferreira, Ana; Van Dam, Jos Cornelis; de Jong van Lier, Quirijn

    2015-04-01

    Field Capacity (FC) is a widely-used concept by agricultural engineers, hydrologists and soil physicists to quantify the available soil water during growing seasons and the accessible soil water storage during intensive rainfall periods. In the field FC does depend on various environmental factors, including the soil hydraulic properties, rate of evapotranspiration, root density distribution, and groundwater level. Therefore world-wide different approaches are used to determine field capacity, based on both static and dynamic criteria. Dynamic criteria are usually related to the simulation of the soil internal drainage, until the percolation attains a negligible value. Recently Assouline and Or (2014) proposed a soil intrinsic characteristic length to determine the FC pressure head. This characteristic length is related to the loss of hydraulic continuity and is derived from the soil water retention function. In Brazil soil hydraulic properties were not yet organized in a database. Therefore we collected existing data of unsaturated soil hydraulic properties across Brazil, using available PhD thesis and scientific publications. This inquiry resulted in a soil sample data set of 106 horizons. We fitted the soil hydraulic parameters (θr, θs, α, n,gλ and Ks)of the Mualem-Van Genuchten (1980) function to all soil samples. Next we derived FC values based on soil internal drainage and using the characteristic length according to Assouline and Or (2014). The internal drainage is analysed with the agrohydrological model SWAP (Kroes and van Dam, 2008). In the poster we will present the Brazilian soil hydraulic database and the derived FC values.

  7. Dust emission parameterization scheme over the MENA region: Sensitivity analysis to soil moisture and soil texture

    NASA Astrophysics Data System (ADS)

    Gherboudj, Imen; Beegum, S. Naseema; Marticorena, Beatrice; Ghedira, Hosni

    2015-10-01

    The mineral dust emissions from arid/semiarid soils were simulated over the MENA (Middle East and North Africa) region using the dust parameterization scheme proposed by Alfaro and Gomes (2001), to quantify the effect of the soil moisture and clay fraction in the emissions. For this purpose, an extensive data set of Soil Moisture and Ocean Salinity soil moisture, European Centre for Medium-Range Weather Forecasting wind speed at 10 m height, Food Agricultural Organization soil texture maps, MODIS (Moderate Resolution Imaging Spectroradiometer) Normalized Difference Vegetation Index, and erodibility of the soil surface were collected for the a period of 3 years, from 2010 to 2013. Though the considered data sets have different temporal and spatial resolution, efforts have been made to make them consistent in time and space. At first, the simulated sandblasting flux over the region were validated qualitatively using MODIS Deep Blue aerosol optical depth and EUMETSAT MSG (Meteosat Seciond Generation) dust product from SEVIRI (Meteosat Spinning Enhanced Visible and Infrared Imager) and quantitatively based on the available ground-based measurements of near-surface particulate mass concentrations (PM10) collected over four stations in the MENA region. Sensitivity analyses were performed to investigate the effect of soil moisture and clay fraction on the emissions flux. The results showed that soil moisture and soil texture have significant roles in the dust emissions over the MENA region, particularly over the Arabian Peninsula. An inversely proportional dependency is observed between the soil moisture and the sandblasting flux, where a steep reduction in flux is observed at low friction velocity and a gradual reduction is observed at high friction velocity. Conversely, a directly proportional dependency is observed between the soil clay fraction and the sandblasting flux where a steep increase in flux is observed at low friction velocity and a gradual increase is

  8. ELECTRON DETACHMENT DISSOCIATION OF SYNTHETIC HEPARAN SULFATE GLYCOSAMINOGLYCAN TETRASACCHARIDES VARYING IN DEGREE OF SULFATION AND HEXURONIC ACID STEREOCHEMISTRY.

    PubMed

    Leach, Franklin E; Arungundram, Sailaja; Al-Mafraji, Kanar; Venot, Andre; Boons, Geert-Jan; Amster, I Jonathan

    2012-12-15

    Glycosaminoglycan (GAG) carbohydrates provide a challenging analytical target for structural determination due to their polydisperse nature, non-template biosynthesis, and labile sulfate modifications. The resultant structures, although heterogeneous, contain domains which indicate a sulfation pattern or code that correlates to specific function. Mass spectrometry, in particular electron detachment dissociation Fourier transform ion cyclotron resonance (EDD FT-ICR MS), provides a highly sensitive platform for GAG structural analysis by providing cross-ring cleavages for sulfation location and product ions specific to hexuronic acid stereochemistry. To investigate the effect of sulfation pattern and variations in stereochemistry on EDD spectra, a series of synthetic heparan sulfate (HS) tetrasaccharides are examined. Whereas previous studies have focused on lowly sulfated compounds (0.5-1 sulfate groups per disaccharide), the current work extends the application of EDD to more highly sulfated tetrasaccharides (1-2 sulfate groups per disaccharide) and presents the first EDD of a tetrasaccharide containing a sulfated hexuronic acid. For these more highly sulfated HS oligomers, alternative strategies are shown to be effective for extracting full structural details. These strategies inlcude sodium cation replacement of protons, for determining the sites of sulfation, and desulfation of the oligosaccharides for the generation of product ions for assigning uronic acid stereochemistry.

  9. Sulfate resistance of high calcium fly ash concrete

    NASA Astrophysics Data System (ADS)

    Dhole, Rajaram

    Sulfate attack is one of the mechanisms which can cause deterioration of concrete. In general, Class C fly ash mixtures are reported to provide poor sulfate resistance. Fly ashes, mainly those belonging to the Class C, were tested as per the ASTM C 1012 procedure to evaluate chemical sulfate resistance. Overall the Class C fly ashes showed poor resistance in the sulfate environment. Different strategies were used in this research work to improve the sulfate resistance of Class C fly ash mixes. The study revealed that some of the strategies such as use of low W/CM (water to cementing materials by mass ratio), silica fume or ultra fine fly ash, high volumes of fly ash and, ternary or quaternary mixes with suitable supplementary cementing materials, can successfully improve the sulfate resistance of the Class C fly ash mixes. Combined sulfate attack, involving physical and chemical action, was studied using sodium sulfate and calcium sulfate solutions. The specimens were subjected to wetting-drying cycles and temperature changes. These conditions were found to accelerate the rate of degradation of concrete placed in a sodium sulfate environment. W/CM was found to be the main governing factor in providing sulfate resistance to mixes. Calcium sulfate did not reveal damage as a result of mainly physical action. Characterization of the selected fly ashes was undertaken by using SEM, XRD and the Rietveld analysis techniques, to determine the relation between the composition of fly ashes and resistance to sulfate attack. The chemical composition of glass represented on the ternary diagram was the main factor which had a significant influence on the sulfate resistance of fly ash mixtures. Mixes prepared with fly ashes containing significant amounts of vulnerable crystalline phases offered poor sulfate resistance. Comparatively, fly ash mixes containing inert crystalline phases such as quartz, mullite and hematite offered good sulfate resistance. The analysis of hydrated lime

  10. Observed soil moisture-atmosphere interactions in the contiguous US from the Soil Climate Analysis Network (SCAN)

    NASA Astrophysics Data System (ADS)

    Xu, R.; Sheffield, J.

    2013-12-01

    The interactions of water and energy between the land and atmosphere are important in many aspects such as understanding the role of the land in weather and climate, improving seasonal forecasts, and evaluating climate models and their projections. Past studies on land-atmosphere interactions over large regions have generally been carried out with reanalysis, satellite remote sensing and model data. This study focuses on observational data from the Soil Climate Analysis Network (SCAN) to investigate the coupling of air temperature, precipitation and soil moisture at different time scales across the contiguous United States. SCAN data from over 80 sites across the U.S. with data between 2002 and 2012 are quality controlled to remove measurement errors and spurious values. Two main hypotheses regarding land-atmosphere interactions are explored: 1) precipitation is the main driver of soil moisture variation with the strength of coupling dependent on location, soil depth and time scale; 2) lack of soil moisture is related to high temperatures through sensible heating with relationships also dependent on location and scale. The statistical correlation between precipitation and soil moisture at daily, sub-monthly, and monthly scales is examined, and a positive relationship is prominent. Daily and monthly air temperature and soil moisture observations suggest that a control of air temperature by soil moisture exists. Further analysis shows significant negative relationships between the number of hot days (NHD) in summer months and soil moisture. The extent of this relationship (quantified by the slope of linear regression) varies across the U.S., with stronger relationships moving from the humid east to the drier central U.S.. In order to differentiate the sources of temperature changes between local coupling and advection, temperature advection is estimated using data from the North American Land Data Assimilation System-2 (NLDAS-2). The results suggest that local

  11. Effects of sulfate chitosan derivatives on nonalcoholic fatty liver disease

    NASA Astrophysics Data System (ADS)

    Yu, Mingming; Wang, Yuanhong; Jiang, Tingfu; Lv, Zhihua

    2014-06-01

    Sulfate chitosan derivatives have good solubility and therapeutic effect on the cell model of NAFLD. The aim of this study was to examine the therapeutic effect of sulfate chitosan derivatives on NAFLD. The male Wistar rats were orally fed high fat emulsion and received sulfate chitosan derivatives for 5 weeks to determine the pre-treatment effect of sulfate chitosan derivatives on NAFLD. To evaluate the therapeutic effect of sulfate chitosan derivatives on NAFLD, the rats were orally fed with high concentration emulsion for 5 weeks, followed by sulfate chitosan derivatives for 3 weeks. Histological analysis and biomedical assays showed that sulfate chitosan derivatives can dramatically prevent the development of hepatic steatosis in hepatocyte cells. In animal studies, pre-treatment and treatment with sulfate chitosan derivatives significantly protected against hepatic steatohepatitis induced by high fat diet according to histological analysis. Furthermore, increased TC, ALT, MDA, and LEP in NAFLD were significantly ameliorated by pre-treatment and treatment with sulfate chitosan derivatives. Furthermore, increased TG, AST, and TNF-α in NAFLD were significantly ameliorated by treatment with sulfate chitosan derivatives. Sulfate chitosan derivatives have good pre-treatment and therapeutic effect on NAFLD.

  12. Geoestatistical analysis of soil properties in the South of Alicante: soil salinity.

    NASA Astrophysics Data System (ADS)

    Melendez-Pastor, I.; Ayguadé, H.; Lag, A.; Navarro-Pedreño, J.; Gomez, I.

    2010-05-01

    The southern coast of Alicante province (southeast of Spain) was largely occupied by a large lagoon until the eighteenth century when drainage infrastructures were built to turn much of the wetlands into irrigated farmlands. This area has a semiarid Mediterranean climate and the shortage of sufficient quality water for irrigation is a serious problem for agriculture and wetland maintenance. This study analyzes the spatial distribution of soil properties and their relationship with land-covers by the use of geostatistics and geographical information systems (GIS) as a tool for land-reclamation and management. A field campaign was conducted and 98 soil samples were collected and spatially referenced with a GPS. Soils of the study area are Calcic Fluvisols according to the World Reference Base for Soil Resources (WRB, 2006). Soil samples were air dried at room temperature and sieve at 2mm (soil fraction to be analysed). Four soil properties were analysed: 1) electrical conductivity (EC) (1:5 w/v water extraction), 2) pH, 3) equivalent carbonates (Porta et al., 1986), and 4) soil organic matter (SOM) by wet chemical oxidation (Walkley and Black, 1934) with potassium dichromate oxidation (Nelson and Sommers, 1982). Geostatistics was used to model the spatial distribution of soil properties. The convex hull of soil samples was used to delimit the area to map. Semivariograms were applied to study the spatial pattern of the four soil properties and ordinary Kriging was used to predict their spatial distribution. Descriptive statistics (mean ± standard deviation) showed that in general terms the soils studied was moderately saline (2.44 ± 0.32 dS×m-1), with a basic pH (8.22 ± 0.32), low soil organic matter content (1.41 ± 0.37 %) and abundant equivalent carbonates (46.1 ± 4.3 %). Electrical conductivity, pH and SOM properties were significantly correlated according with the Pearson bivariate correlation test (with P4 dS×m-1) or non-saline (EC

  13. Rapid extraction methods for organics in soil

    SciTech Connect

    Alsop, G.M.; Conway, R.A.

    1983-03-01

    This article presents rapid methods for the extraction and subsequent analysis of organics in soils potentially contaminated from chemical wastes. A methylene chloride extraction, on both a micro scale in a syringe and a macro scale in a shaken flask, with subsequent gravimetric analysis are described. On wet soils, anhydrous sodium sulfate is added to bind the water before adding methylene chloride and mixing with a vortex touch mixer. A baseline procedure is the direct gravimetric determination of volatile organics corrected with a Karl Fischer determination of water. Estimates of time saved by using the rapid methods, as well as precision and accuracy data, are presented.

  14. Assessment of diversity indices for the characterization of the soil prokaryotic community by metagenomic analysis

    NASA Astrophysics Data System (ADS)

    Chernov, T. I.; Tkhakakhova, A. K.; Kutovaya, O. V.

    2015-04-01

    The diversity indices used in ecology for assessing the metagenomes of soil prokaryotic communities at different phylogenetic levels were compared. The following indices were considered: the number of detected taxa and the Shannon, Menhinick, Margalef, Simpson, Chao1, and ACE indices. The diversity analysis of the prokaryotic communities in the upper horizons of a typical chernozem (Haplic Chernozem (Pachic)), a dark chestnut soil (Haplic Kastanozem (Chromic)), and an extremely arid desert soil (Endosalic Calcisol (Yermic)) was based on the analysis of 16S rRNA genes. The Menhinick, Margalef, Chao1, and ACE indices gave similar results for the classification of the communities according to their diversity levels; the Simpson index gave good results only for the high-level taxa (phyla); the best results were obtained with the Shannon index. In general, all the indices used showed a decrease in the diversity of the soil prokaryotes in the following sequence: chernozem > dark chestnut soil > extremely arid desert soil.

  15. Analysis of field-scale spatial correlations and variations of soil nutrients using geostatistics.

    PubMed

    Liu, Ruimin; Xu, Fei; Yu, Wenwen; Shi, Jianhan; Zhang, Peipei; Shen, Zhenyao

    2016-02-01

    Spatial correlations and soil nutrient variations are important for soil nutrient management. They help to reduce the negative impacts of agricultural nonpoint source pollution. Based on the sampled available nitrogen (AN), available phosphorus (AP), and available potassium (AK), soil nutrient data from 2010, the spatial correlation, was analyzed, and the probabilities of the nutrient's abundance or deficiency were discussed. This paper presents a statistical approach to spatial analysis, the spatial correlation analysis (SCA), which was originally developed for describing heterogeneity in the presence of correlated variation and based on ordinary kriging (OK) results. Indicator kriging (IK) was used to assess the susceptibility of excess of soil nutrients based on crop needs. The kriged results showed there was a distinct spatial variability in the concentration of all three soil nutrients. High concentrations of these three soil nutrients were found near Anzhou. As the distance from the center of town increased, the concentration of the soil nutrients gradually decreased. Spatially, the relationship between AN and AP was negative, and the relationship between AP and AK was not clear. The IK results showed that there were few areas with a risk of AN and AP overabundance. However, almost the entire study region was at risk of AK overabundance. Based on the soil nutrient distribution results, it is clear that the spatial variability of the soil nutrients differed throughout the study region. This spatial soil nutrient variability might be caused by different fertilizer types and different fertilizing practices.

  16. Effective synthesis of sulfate metabolites of chlorinated phenols.

    PubMed

    Lehmler, Hans-Joachim; He, Xianran; Li, Xueshu; Duffel, Michael W; Parkin, Sean

    2013-11-01

    Chlorophenols are an important class of persistent environmental contaminants and have been implicated in a range of adverse health effects, including cancer. They are readily conjugated and excreted as the corresponding glucuronides and sulfates in the urine of humans and other species. Here we report the synthesis and characterization of a series of ten chlorophenol sulfates by sulfation of the corresponding chlorophenols with 2,2,2-trichloroethyl (TCE) chlorosulfate using N,N-dimethylaminopyridine (DMAP) as base. Deprotection of the chlorophenol diesters with zinc powder/ammonium formate yielded the respective chlorophenol sulfate ammonium salts in good yield. The molecular structure of three TCE-protected chlorophenol sulfate diesters and one chlorophenol sulfate monoester were confirmed by X-ray crystal structure analysis. The chlorophenol sulfates were stable for several months if stored at -20 °C and, thus, are useful for future toxicological, environmental and human biomonitoring studies.

  17. A meta-analysis of soil biodiversity impacts on the carbon cycle

    NASA Astrophysics Data System (ADS)

    de Graaff, M.-A.; Adkins, J.; Kardol, P.; Throop, H. L.

    2014-11-01

    Loss of biodiversity can impact ecosystem functioning, such as altering carbon (C) cycling rates. Soils are the largest terrestrial C reservoir, containing more C globally than the biotic and atmospheric pools together. As such, soil C cycling, and the processes controlling it, have the potential to affect atmospheric CO2 concentrations and subsequent climate change. Despite the growing evidence of links between plant diversity and soil C cycling, there is a dearth of information on whether similar relationships exist between biodiversity of soil organisms (microbes and soil fauna) and C cycling. This is despite increasing recognition that soil communities display high levels of both taxonomic and functional diversity and are key drivers of fluxes of C between the atmosphere and terrestrial ecosystems. Here, we used meta-analysis and regression analysis to quantitatively assess how soil biodiversity affects soil C cycling pools and processes (i.e., soil C respiration, litter decomposition, and plant biomass). We compared the response of pool amd process variables to changes in biodiversity both within and across trophic groups of organisms. Overall, loss of soil diversity significantly reduced soil C respiration (-27.5%) and plant tissue decomposition (-18%), but did not affect above- and belowground plant biomass. Detailed analyses showed that loss of within-group biodiversity significantly reduced soil C respiration, while loss of across-group diversity did not. Decomposition was negatively affected by losses of both within-group and across-group diversity. Further, loss of microbial diversity strongly reduced soil C respiration (-41%). In contrast, plant tissue decomposition was negatively affected by loss of soil faunal diversity, but was unaffected by loss of microbial diversity. Taken together, our findings show that loss of soil biodiversity can strongly affect soil C cycling processes, and highlight the importance of diversity across organismal groups for

  18. A meta-analysis of soil biodiversity impacts on the carbon cycle

    NASA Astrophysics Data System (ADS)

    de Graaff, M.-A.; Adkins, J.; Kardol, P.; Throop, H. L.

    2015-03-01

    Loss of biodiversity impacts ecosystem functions, such as carbon (C) cycling. Soils are the largest terrestrial C reservoir, containing more C globally than the biotic and atmospheric pools together. As such, soil C cycling, and the processes controlling it, has the potential to affect atmospheric CO2 concentrations and subsequent climate change. Despite the growing evidence of links between plant diversity and soil C cycling, there is a dearth of information on whether similar relationships exist between soil biodiversity and C cycling. This knowledge gap occurs even though there has been increased recognition that soil communities display high levels of both taxonomic and functional diversity and are key drivers of fluxes of C between the atmosphere and terrestrial ecosystems. Here, we used meta-analysis and regression analysis to quantitatively assess how soil biodiversity affects soil C cycling pools and processes (i.e., soil C respiration, litter decomposition, and plant biomass). We compared the response of process variables to changes in diversity both within and across groups of soil organisms that differed in body size, a grouping that typically correlates with ecological function. When studies that manipulated both within- and across-body size group diversity were included in the meta-analysis, loss of diversity significantly reduced soil C respiration (-27.5%) and plant tissue decomposition (-18%) but did not affect above- or belowground plant biomass. The loss of within-group diversity significantly reduced soil C respiration, while loss of across-group diversity did not. Decomposition was negatively affected both by loss of within-group and across-group diversity. Furthermore, loss of microbial diversity strongly reduced soil C respiration (-41%). In contrast, plant tissue decomposition was negatively affected by loss of soil faunal diversity but was unaffected by loss of microbial diversity. Taken together, our findings show that loss of soil

  19. Metabolomics analysis reveals elevation of 3-indoxyl sulfate in plasma and brain during chemically-induced acute kidney injury in mice: Investigation of nicotinic acid receptor agonists

    SciTech Connect

    Zgoda-Pols, Joanna R.; Chowdhury, Swapan; Wirth, Mark; Milburn, Michael V.; Alexander, Danny C.; Alton, Kevin B.

    2011-08-15

    An investigative renal toxicity study using metabolomics was conducted with a potent nicotinic acid receptor (NAR) agonist, SCH 900424. Liquid chromatography-mass spectrometry (LC-MS) and gas chromatography-mass spectrometry (GC-MS) techniques were used to identify small molecule biomarkers of acute kidney injury (AKI) that could aid in a better mechanistic understanding of SCH 900424-induced AKI in mice. The metabolomics study revealed 3-indoxyl sulfate (3IS) as a more sensitive marker of SCH 900424-induced renal toxicity than creatinine or urea. An LC-MS assay for quantitative determination of 3IS in mouse matrices was also developed. Following treatment with SCH 900424, 3IS levels were markedly increased in murine plasma and brain, thereby potentially contributing to renal- and central nervous system (CNS)-related rapid onset of toxicities. Furthermore, significant decrease in urinary excretion of 3IS in those animals due to compromised renal function may be associated with the elevation of 3IS in plasma and brain. These data suggest that 3IS has a potential to be a marker of renal and CNS toxicities during chemically-induced AKI in mice. In addition, based on the metabolomic analysis other statistically significant plasma markers including p-cresol-sulfate and tryptophan catabolites (kynurenate, kynurenine, 3-indole-lactate) might be of toxicological importance but have not been studied in detail. This comprehensive approach that includes untargeted metabolomic and targeted bioanalytical sample analyses could be used to investigate toxicity of other compounds that pose preclinical or clinical development challenges in a pharmaceutical discovery and development. - Research Highlights: > Nicotinic acid receptor agonist, SCH 900424, caused acute kidney injury in mice. > MS-based metabolomics was conducted to identify potential small molecule markers of renal toxicity. > 3-indoxyl-sulfate was found to be as a more sensitive marker of renal toxicity than creatinine

  20. Analysis and Modeling of soil hydrology under different soil additives in artificial runoff plots

    NASA Astrophysics Data System (ADS)

    Ruidisch, M.; Arnhold, S.; Kettering, J.; Huwe, B.; Kuzyakov, Y.; Ok, Y.; Tenhunen, J. D.

    2009-12-01

    The impact of monsoon events during June and July in the Korean project region Haean Basin, which is located in the northeastern part of South Korea plays a key role for erosion, leaching and groundwater pollution risk by agrochemicals. Therefore, the project investigates the main hydrological processes in agricultural soils under field and laboratory conditions on different scales (plot, hillslope and catchment). Soil hydrological parameters were analysed depending on different soil additives, which are known for prevention of soil erosion and nutrient loss as well as increasing of water infiltration, aggregate stability and soil fertility. Hence, synthetic water-soluble Polyacrylamides (PAM), Biochar (Black Carbon mixed with organic fertilizer), both PAM and Biochar were applied in runoff plots at three agricultural field sites. Additionally, as control a subplot was set up without any additives. The field sites were selected in areas with similar hillslope gradients and with emphasis on the dominant land management form of dryland farming in Haean, which is characterised by row planting and row covering by foil. Hydrological parameters like satured water conductivity, matrix potential and water content were analysed by infiltration experiments, continuous tensiometer measurements, time domain reflectometry as well as pressure plates to indentify characteristic water retention curves of each horizon. Weather data were observed by three weather stations next to the runoff plots. Measured data also provide the input data for modeling water transport in the unsatured zone in runoff plots with HYDRUS 1D/2D/3D and SWAT (Soil & Water Assessment Tool).

  1. Structural characterization of a serendipitously discovered bioactive macromolecule, lignin sulfate.

    PubMed

    Raghuraman, Arjun; Tiwari, Vaibhav; Thakkar, Jay N; Gunnarsson, Gunnar T; Shukla, Deepak; Hindle, Michael; Desai, Umesh R

    2005-01-01

    The herpes simplex virus-1 (HSV-1) utilizes cell-surface glycosaminoglycan, heparan sulfate, to gain entry into cells and cause infection. In a search for synthetic mimics of heparan sulfate to prevent HSV infection, we discovered potent inhibitory activity arising from sulfation of a monomeric flavonoid. Yet, detailed screening indicated that the sulfated flavonoid was completely inactive and the potent inhibitory activity arose from a macromolecular substance present in the parent flavonoid. The active principle was identified through a battery of biophysical and chemical analyses as a sulfated form of lignin, a three-dimensional network polymer composed of substituted phenylpropanoid monomers. Mass spectral analysis of the parent lignin and its sulfated derivative indicates the presence of p-coumaryl monomers interconnected through uncondensed beta-O-4-linkages. Elemental analysis of lignin sulfate correlates primarily with a polymer of p-coumaryl alcohol containing one sulfate group. High-performance size exclusion chromatography shows a wide molecular weight distribution from 1.5 to 40 kDa suggesting significant polydispersity. Polyacrylamide gel electrophoresis (PAGE) analysis indicates a highly networked polymer that differs significantly from linear charged polymers with respect to its electrophoretic mobility. Overall, macromolecular lignin sulfate presents a multitude of substructures that can interact with biomolecules, including viral glycoproteins, using hydrophobic, hydrogen-bonding, and ionic forces. Thus, lignin sulfate represents a large number of interesting structures with potential medicinal benefits.

  2. McMaster Mesonet soil moisture dataset: description and spatio-temporal variability analysis

    NASA Astrophysics Data System (ADS)

    Kornelsen, K. C.; Coulibaly, P.

    2012-12-01

    This paper introduces and describes the hourly high resolution soil moisture dataset continuously recorded by the McMaster Mesonet located in the Hamilton-Halton Watershed in Southern Ontario, Canada. The McMaster Mesonet consists of a network of time domain reflectometer (TDR) probes collecting hourly soil moisture data at six depths between 10 cm and 100 cm at nine locations per site spread across four sites in the 1250 km2 watershed. The sites for the soil moisture arrays are designed to further improve understanding of soil moisture dynamics in a cold and snowy climate and to capture soil moisture transitions in areas that have different topography, soil and land-cover. The McMaster Mesonet soil moisture constitutes a unique database in Canada because of its high spatio-temporal resolution. In order to provide some insight into the dominant processes at the McMaster Mesonet sites a spatio-temporal and temporal stability analysis were conducted to identify spatio-temporal patterns in the data and to suggest some physical interpretation of soil moisture variability. It was found that the seasonal Canadian climate causes a transition in soil moisture patterns at seasonal time scales. During winter and early spring months, and at the meadow sites, soil moisture distribution is governed by topographic redistribution, whereas following efflorescence in the spring and summer, soil moisture spatial distribution at the forested site was equally dominated by vegetation canopy. Analysis of short-term temporal stability revealed that the relative difference between sites was maintained unless there was significant rainfall (> 20 mm) or wet conditions a priori. Following a disturbance in the spatial soil moisture distribution due to wetting, the relative soil moisture pattern re-emerged in 18 to 24 h. Access to the McMaster Mesonet data can be provided by visiting http://www.hydrology.mcmaster.ca.

  3. McMaster Mesonet soil moisture dataset: description and spatio-temporal variability analysis

    NASA Astrophysics Data System (ADS)

    Kornelsen, K. C.; Coulibaly, P.

    2013-04-01

    This paper introduces and describes the hourly, high-resolution soil moisture dataset continuously recorded by the McMaster Mesonet located in the Hamilton-Halton Watershed in Southern Ontario, Canada. The McMaster Mesonet consists of a network of time domain reflectometer (TDR) probes collecting hourly soil moisture data at six depths between 10 cm and 100 cm at nine locations per site, spread across four sites in the 1250 km2 watershed. The sites for the soil moisture arrays are designed to further improve understanding of soil moisture dynamics in a seasonal climate and to capture soil moisture transitions in areas that have different topography, soil and land cover. The McMaster Mesonet soil moisture constitutes a unique database in Canada because of its high spatio-temporal resolution. In order to provide some insight into the dominant processes at the McMaster Mesonet sites, a spatio-temporal and temporal stability analysis were conducted to identify spatio-temporal patterns in the data and to suggest some physical interpretation of soil moisture variability. It was found that the seasonal climate of the Great Lakes Basin causes a transition in soil moisture patterns at seasonal timescales. During winter and early spring months, and at the meadow sites, soil moisture distribution is governed by topographic redistribution, whereas following efflorescence in the spring and summer, soil moisture spatial distribution at the forested site was also controlled by vegetation canopy. Analysis of short-term temporal stability revealed that the relative difference between sites was maintained unless there was significant rainfall (> 20 mm) or wet conditions a priori. Following a disturbance in the spatial soil moisture distribution due to wetting, the relative soil moisture pattern re-emerged in 18 to 24 h. Access to the McMaster Mesonet data can be provided by visiting www.hydrology.mcmaster.ca/mesonet.

  4. Analysis of Soil Structure Turnover with Garnet Particles and X-Ray Microtomography

    PubMed Central

    Vogel, Hans-Jörg

    2016-01-01

    Matter turnover in soil is tightly linked to soil structure which governs the heterogeneous distribution of habitats, reaction sites and pathways in soil. Thereby, the temporal dynamics of soil structure alteration is deemed to be important for essential ecosystem functions of soil but very little is known about it. A major reason for this knowledge gap is the lack of methods to study soil structure turnover directly at microscopic scales. Here we devise a conceptual approach and an image processing workflow to study soil structure turnover by labeling some initial state of soil structure with small garnet particles and tracking their fate with X-ray microtomography. The particles adhere to aggregate boundaries at the beginning of the experiment but gradually change their position relative to the nearest pore as structure formation progresses and pores are destructed or newly formed. A new metric based on the contact distances between particles and pores is proposed that allows for a direct quantification of soil structure turnover rates. The methodology is tested for a case study about soil compaction of a silty loam soil during stepwise increase of bulk density (ρ = {1.1, 1.3, 1.5} g/cm3). We demonstrate that the analysis of mean contact distances provides genuinely new insights about changing diffusion pathways that cannot be inferred neither from conventional pore space attributes (porosity, mean pore size, pore connectivity) nor from deformation analysis with digital image correlation. This structure labeling approach to quantify soil structure turnover provides a direct analogy to stable isotope labeling for the analysis of matter turnover and can be readily combined with each other. PMID:27453995

  5. Bacterial and fungal microbiome analysis of alfalfa rhizosphere soils

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soil microbial communities are increasingly being recognized for their critical roles in agriculture. While microbiome studies enabled by next generation sequencing platforms reveal soils to be some of the most diverse environments known, certain taxa may have disproportionate influence in their fu...

  6. ION-SELECTIVE ELECTRODES FOR SIMULTANEOUS ANALYSIS OF SOIL MACRONUTRIENTS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Automated sensing of soil macronutrients would be useful in mapping soil nutrient variability for variable-rate nutrient management. Ion-selective electrodes (ISEs) are a promising approach because of their small size, rapid response, and ability to directly measure the analyte. This study reports ...

  7. BERGMANN USA SOIL SEDIMENT WASHING TECHNOLOGY - APPLICATIONS ANALYSIS REPORT

    EPA Science Inventory

    This document provides an evaluation of the performance of the Bergmann USA Soil/Sediment Washing System and its applicability for the treatment of soils or sediments contaminated with organic and/or inorganic compounds. Both the technical and economic aspects of the technology w...

  8. Preface, Soil Science: A step-by-step analysis

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This book provides step-by-step procedures for soil professionals, without a lot of background theory. Chapters are targeted toward agricultural and environmental consultants, producers, students, teachers, government, and industry. Applied soil scientists gave input through a survey, which guided t...

  9. Analysis methods for the determination of anthropogenic additions of P to agricultural soils

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phosphorus additions and measurement in soil is of concern on lands where biosolids have been applied. Colorimetric analysis for plant-available P may be inadequate for the accurate assessment of soil P. Phosphate additions in a regulatory environment need to be accurately assessed as the reported...

  10. Preliminary Analysis on Matric Suction for Barren Soil

    NASA Astrophysics Data System (ADS)

    Azhar, A. T. S.; Fazlina, M. I. S.; Aziman, M.; Fairus, Y. M.; Azman, K.; Hazreek, Z. A. M.

    2016-11-01

    Most research conducted on slope failures can broadly be attributed to the convergence of three factors, i.e. rainfall, steepness of slope, and soil geological profile. The mechanism of the failures is mainly due to the loss of matric suction of soils by rainwater. When rainwater infiltrates into the slopes, it will start to saturate the soil, i.e., reduce the matric suction. A good understanding of landslide mechanisms and the characteristics of unsaturated soil and rock in tropical areas is crucial in landslide hazard formulation. Most of the slope failures in unsaturated tropical residual soil in Malaysia are mainly due to infiltration, especially during intense and prolonged rainfall, which reduces the soil matric suction and hence decreases the stability of the slope. Therefore, the aim of this research is to determine the matric suction for barren soil and to model an unsaturated slope with natural rainfall to evaluate the effects of matric suction on rainfall intensity. A field test was carried out using the Watermark Soil Moisture Sensor to determine the matric suction. The sensor was connected to a program called SpecWare 9 Basic which also used Data Logging Rain gauge Watermark 1120 to measure the intensity and duration of rainfall. This study was conducted at the Research Centre for Soft Soil which is a new Research and Development (R & D) initiative by Universiti Tun Hussein Onn Malaysia, Parit Raja. Field observation showed that the highest daily suction was recorded during noon while the lowest suction was obtained at night and early morning. The highest matric suction for loose condition was 31.0 kPa while the highest matric suction for compacted condition was 32.4 kPa. The results implied that the field suction variation was not only governed by the rainfall, but also the cyclic evaporation process. The findings clearly indicated that the changes in soil suction distribution patterns occurred due to different weather conditions.

  11. Analysis Results for Lunar Soil Simulant Using a Portable X-Ray Fluorescence Analyzer

    NASA Technical Reports Server (NTRS)

    Boothe, R. E.

    2006-01-01

    Lunar soil will potentially be used for oxygen generation, water generation, and as filler for building blocks during habitation missions on the Moon. NASA s in situ fabrication and repair program is evaluating portable technologies that can assess the chemistry of lunar soil and lunar soil simulants. This Technical Memorandum summarizes the results of the JSC 1 lunar soil simulant analysis using the TRACeR III IV handheld x-ray fluorescence analyzer, manufactured by KeyMaster Technologies, Inc. The focus of the evaluation was to determine how well the current instrument configuration would detect and quantify the components of JSC-1.

  12. Methylmercury formation in a wetland mesocosm amended with sulfate.

    PubMed

    Harmon, S M; King, J K; Gladden, J B; Chandler, G T; Newman, L A

    2004-01-15

    This study used an experimental model to evaluate methylmercury accumulation when the soil of a constructed wetland is amended with sulfate. The model was planted with Schoenoplectus californicus and designed to reduce wastestream metals and metal-related toxicity. The soil was varied during construction to provide a control and two sulfate treatments which were equally efficient at overall mercury and copper removal. After an initial stabilization period, methylmercury concentrations in porewater were up to three times higher in the sulfate-treated porewater (0.5-1.6 ng/L) than in the control (<0.02-0.5 ng/L). Mean percent methylmercury was 9.0% in the control with 18.5 and 16.6% in the low- and high-sulfate treatments, respectively. Methylmercury concentrations measured in mesocosm surface water did not reflect the differences between the control and the sulfate treatments that were noted in porewater. The mean bulk sediment methylmercury concentration in the top 6 cm of the low-sulfate treatment (2.33 ng/g) was significantly higher than other treatment means which ranged from 0.96 to 1.57 ng/g. Total mercury in sediment ranged from 20.8 to 33.4 ng/g, with no differences between treatments. Results suggest that the non-sulfate-amended control was equally effective in removing metals while keeping mercury methylation low.

  13. A geospatial analysis of soil lead concentrations around regional Oklahoma airports.

    PubMed

    McCumber, Alexander; Strevett, K A

    2017-01-01

    Lead has been banned from automobile gasoline since 1995; however, lead is still used as an additive to aviation gasoline (avgas). Airports are now one of the greatest sources of lead air emission in the US. The objectives of this study were (1) to evaluate soil lead levels radially from three regional airports; (2) collect historical meteorological data; (3) examine the soil organic matter content and (4) develop correlation coefficients to evaluate correlations among variables. Soil samples were collected from 3 different airports in Oklahoma and the soil lead concentration was measured using x-ray fluorescence (XRF). The measured soil lead concentrations were plotted with the corresponding GPS location in ArcGIS and Inverse Distance Weight spatial analysis was used to create modeled isopleths of soil lead concentrations. One of the three airports was found to have soil lead concentrations that correlate with soil organic matter with one other showing correlation between soil lead concentration and distance from the airport. The spatial modeled isopleths showed elevated soil lead concentrations in the direction of prevailing winds with "hot spots" near the avgas fueling stations.

  14. [Heavy metal pollution characteristics and ecological risk analysis for soil around Haining electroplating industrial park].

    PubMed

    Li, Jiong-Hui; Weng, Shan; Fang, Jing; Huang, Jia-Lei; Lu, Fang-Hua; Lu, Yu-Hao; Zhang, Hong-Ming

    2014-04-01

    The pollution status and potential ecological risks of heavy metal in soils around Haining electroplating industrial park were studied. Hakanson index approach was used to assess the ecological hazards of heavy metals in soils. Results showed that average concentrations of six heavy metals (Cu, Ni, Pb, Zn, Cd and Cr) in the soils were lower than the secondary criteria of environmental quality standard for soils, indicating limited harmful effects on the plants and the environment in general. Though the average soil concentrations were low, heavy metal concentrations in six sampling points located at the side of road still exceeded the criteria, with excessive rate of 13%. Statistic analysis showed that concentrations of Cu and Cd in roadside soils were significantly higher than those in non-roadside soils, indicating that the excessive heavy metal accumulations in the soil closely related with traffic transport. The average potential ecological hazard index of soils around Haining electroplating industrial park was 46.6, suggesting a slightly ecological harm. However, the potential ecological hazard index of soils with excessive heavy metals was 220-278, suggesting the medium ecological hazards. Cd was the most seriously ecological hazard factor.

  15. Geospatial Analysis of Near-Surface Soil Moisture Time Series Data Over Indian Region

    NASA Astrophysics Data System (ADS)

    Berwal, P.; Murthy, C. S.; Raju, P. V.; Sesha Sai, M. V. R.

    2016-06-01

    The present study has developed the time series database surface soil moisture over India, for June, July and August months for the period of 20 years from 1991 to 2010, using data products generated under Climate Change Initiative Programme of European Space Agency. These three months represent the crop sowing period in the prime cropping season in the country and the soil moisture data during this period is highly useful to detect the drought conditions and assess the drought impact. The time series soil moisture data which is in 0.25 degree spatial resolution was analyzed to generate different indicators. Rainfall data of same spatial resolution for the same period, generated by India Meteorological Department was also procured and analyzed. Geospatial analysis of soil moisture and rainfall derived indicators was carried out to study (1) inter annual variability of soil moisture and rainfall, (2) soil moisture deviations from normal during prominent drought years, (3) soil moisture and rainfall correlations and (4) drought exposure based on soil moisture and rainfall variability. The study has successfully demonstrated the potential of these soil moisture time series data sets for generating regional drought surveillance information products, drought hazard mapping, drought exposure analysis and detection of drought sensitive areas in the crop planting period.

  16. Recovery of soil unicellular eukaryotes: an efficiency and activity analysis on the single cell level.

    PubMed

    Lentendu, Guillaume; Hübschmann, Thomas; Müller, Susann; Dunker, Susanne; Buscot, François; Wilhelm, Christian

    2013-12-01

    Eukaryotic unicellular organisms are an important part of the soil microbial community, but they are often neglected in soil functional microbial diversity analysis, principally due to the absence of specific investigation methods in the special soil environment. In this study we used a method based on high-density centrifugation to specifically isolate intact algal and yeast cells, with the aim to analyze them with flow cytometry and sort them for further molecular analysis such as deep sequencing. Recovery efficiency was tested at low abundance levels that fit those in natural environments (10(4) to 10(6) cells per g soil). Five algae and five yeast morphospecies isolated from soil were used for the testing. Recovery efficiency was between 1.5 to 43.16% and 2 to 30.2%, respectively, and was dependent on soil type for three of the algae. Control treatments without soil showed that the majority of cells were lost due to the method itself (58% and 55.8% respectively). However, the cell extraction technique did not much compromise cell vitality because a fluorescein di-acetate assay indicated high viability percentages (73.3% and 97.2% of cells, respectively). The low abundant algae and yeast morphospecies recovered from soil were cytometrically analyzed and sorted. Following, their DNA was isolated and amplified using specific primers. The developed workflow enables isolation and enrichment of intact autotrophic and heterotrophic soil unicellular eukaryotes from natural environments for subsequent application of deep sequencing technologies.

  17. Mineralogy, Abundance, and Hydration State of Sulfates and Chlorides at the Mars Pathfinder Landing Site

    NASA Technical Reports Server (NTRS)

    Zolotov, M. Y.; Kuzmin, R. O.; Shock, E. L.

    2004-01-01

    Detection of elevated concentrations of S and Cl at the landing sites of Viking 1 and 2 [1], and Mars Pathfinder (MP) [2-5] reveals the presence of sulfates and chlorides in soil and rock samples [1-10]. These data are consistent with the findings of Ca sulfates and NaCl in Martian meteorites [11,12], and with Earth-based spectroscopic observations [13,14] tentatively indicating the presence of sulfates on Mars. Although the correlation of S and Mg in Viking and MP samples could reveal the occurrence of Mg sulfate [1-10], the mineralogy of sulfates and chlorides remains unclear.

  18. Functional Genomic Analysis Identifies Indoxyl Sulfate as a Major, Poorly Dialyzable Uremic Toxin in End-Stage Renal Disease

    PubMed Central

    Jhawar, Sachin; Singh, Prabhjot; Torres, Daniel; Ramirez-Valle, Francisco; Kassem, Hania; Banerjee, Trina; Dolgalev, Igor; Heguy, Adriana; Zavadil, Jiri; Lowenstein, Jerome

    2015-01-01

    Background Chronic renal failure is characterized by progressive renal scarring and accelerated arteriosclerotic cardiovascular disease despite what is considered to be adequate hemodialysis or peritoneal dialysis. In rodents with reduced renal mass, renal scarring has been attributed to poorly filtered, small protein-bound molecules. The best studied of these is indoxyl sulfate (IS). Methods We have attempted to establish whether there are uremic toxins that are not effectively removed by hemodialysis. We examined plasma from patients undergoing hemodialysis, employing global gene expression in normal human renal cortical cells incubated in pre- and post- dialysis plasma as a reporter system. Responses in cells incubated with pre- and post-dialysis uremic plasma (n = 10) were compared with responses elicited by plasma from control subjects (n = 5). The effects of adding IS to control plasma and of adding probenecid to uremic plasma were examined. Plasma concentrations of IS were measured by HPLC (high pressure liquid chromatography). Results Gene expression in our reporter system revealed dysregulation of 1912 genes in cells incubated with pre-dialysis uremic plasma. In cells incubated in post-dialysis plasma, the expression of 537 of those genes returned to baseline but the majority of them (1375) remained dysregulated. IS concentration was markedly elevated in pre- and post-dialysis plasma. Addition of IS to control plasma simulated more than 80% of the effects of uremic plasma on gene expression; the addition of probenecid, an organic anion transport (OAT) inhibitor, to uremic plasma reversed the changes in gene expression. Conclusion These findings provide evidence that hemodialysis fails to effectively clear one or more solutes that effect gene expression, in our reporter system, from the plasma of patients with uremia. The finding that gene dysregulation was simulated by the addition of IS to control plasma and inhibited by addition of an OAT inhibitor to

  19. Heparin-like properties of sulfated alginates with defined sequences and sulfation degrees.

    PubMed

    Arlov, Øystein; Aachmann, Finn Lillelund; Sundan, Anders; Espevik, Terje; Skjåk-Bræk, Gudmund

    2014-07-14

    Sulfated glycosaminoglycans have a vast range of protein interactions relevant to the development of new biomaterials and pharmaceuticals, but their characterization and application is complicated mainly due to a high structural variability and the relative difficulty to isolate large quantities of structurally homogeneous samples. Functional and versatile analogues of heparin/heparan sulfate can potentially be created from sulfated alginates, which offer structure customizability through targeted enzymatic epimerization and precise tuning of the sulfation degree. Alginates are linear polysaccharides consisting of β-D-mannuronic acid (M) and α-L-guluronic acid (G), derived from brown algae and certain bacteria. The M/G ratio and distribution of blocks are critical parameters for the physical properties of alginates and can be modified in vitro using mannuronic-C5-epimerases to introduce sequence patterns not found in nature. Alginates with homogeneous sequences (poly-M, poly-MG, and poly-G) and similar molecular weights were chemically sulfated and structurally characterized by the use of NMR and elemental analysis. These sulfated alginates were shown to bind and displace HGF from the surface of myeloma cells in a manner similar to heparin. We observed dependence on the sulfation degree (DS) as well as variation in efficacy based on the alginate monosaccharide sequence, relating to relative flexibility and charge density in the polysaccharide chains. Co-incubation with human plasma showed complement compatibility of the alginates and lowering of soluble terminal complement complex levels by sulfated alginates. The sulfated polyalternating (poly-MG) alginate proved to be the most reproducible in terms of precise sulfation degrees and showed the greatest relative degree of complement inhibition and HGF interaction, maintaining high activity at low DS values.

  20. LORICA - A new model for linking landscape and soil profile evolution: Development and sensitivity analysis

    NASA Astrophysics Data System (ADS)

    Temme, Arnaud J. A. M.; Vanwalleghem, Tom

    2016-05-01

    Soils and landscapes evolve in tandem. Landscape position is a strong determinant of vertical soil development, which has often been formalized in the catena concept. At the same time, soil properties are strong determinants of geomorphic processes such as overland erosion, landsliding and creep. We present a new soilscape evolution model; LORICA, to study these numerous interactions between soil and landscape development. The model is based on the existing landscape evolution model LAPSUS and the soil formation model MILESD. The model includes similar soil formation processes as MILESD, but the main novelties include the consideration of more layers and the dynamic adaption of the number of layers as a function of the soil profile's heterogeneity. New processes in the landscape evolution component include a negative feedback of vegetation and armouring and particle size selectivity of the erosion-deposition process. In order to quantify these different interactions, we present a full sensitivity analysis of the input parameters. First results show that the model successfully simulates various soil-landscape interactions, leading to outputs where the surface changes in the landscape clearly depend on soil development, and soil changes depend on landscape location. Sensitivity analysis of the model confirms that soil and landscape interact: variables controlling amount and position of fine clay have the largest effect on erosion, and erosion variables control among others the amount of chemical weathering. These results show the importance of particle size distribution, and especially processes controlling the presence of finer clay particles that are easily eroded, both for the resulting landscape form as for the resulting soil profiles. Further research will have to show whether this is specific to the boundary conditions of this study or a general phenomenon.

  1. Preliminary Experimental Analysis of Soil Stabilizers for Contamination Control

    SciTech Connect

    Lagos, L.; Varona, J.; Zidan, A.; Gudavalli, R.; Wu, Kuang-His

    2006-07-01

    A major focus of Department of Energy's (DOE's) environmental management mission at the Hanford site involves characterizing and remediating contaminated soil and groundwater; stabilizing contaminated soil; remediating disposal sites; decontaminating and decommissioning structures, and demolishing former plutonium production process buildings, nuclear reactors, and separation plants; maintaining inactive waste sites; transitioning facilities into the surveillance and maintenance program; and mitigating effects to biological and cultural resources from site development and environmental cleanup and restoration activities. For example, a total of 470,914 metric tons of contaminated soil from 100 Areas remediation activities were disposed at the Environmental Restoration Disposal Facility (ERDF) during 2004. The Applied Research Center (ARC) at Florida International University (FIU) is supporting the Hanford's site remediation program by analyzing the effectiveness of several soil stabilizers (fixatives) for contamination control during excavation activities. The study is focusing on determining the effects of varying soil conditions, temperature, humidity and wind velocity on the effectiveness of the candidate stabilizers. The test matrix consists of a soil penetration-depth study, wind tunnel experiments for determination of threshold velocity, and temperature and moisture-controlled drying/curing experiments. These three set of experiments are designed to verify performance metrics, as well as provide insight into what fundamental forces are altered by the use of the stabilizer. This paper only presents the preliminary results obtained during wind tunnel experiments using dry Hanford soil samples (with 2.7% moisture by weight). These dry soil samples were exposed to varying wind speeds from 2.22 m/sec to 8.88 m/sec. Furthermore, airborne particulate data was collected for the dry Hanford soil experiments using an aerosol analyzer instrument. (authors)

  2. Image Analysis to Estimate Mulch Residual on Soil

    NASA Astrophysics Data System (ADS)

    Moreno Valencia, Carmen; Moreno Valencia, Marta; Tarquis, Ana M.

    2014-05-01

    Organic farmers are currently allowed to use conventional polyethylene mulch, provided it is removed from the field at the end of the growing or harvest season. To some, such use represents a contradiction between the resource conservation goals of sustainable, organic agriculture and the waste generated from the use of polyethylene mulch. One possible solution is to use biodegradable plastic or paper as mulch, which could present an alternative to polyethylene in reducing non-recyclable waste and decreasing the environmental pollution associated with it. Determination of mulch residues on the ground is one of the basic requisites to estimate the potential of each material to degrade. Determination the extent of mulch residue on the field is an exhausting job while there is not a distinct and accurate criterion for its measurement. There are several indices for estimation the residue covers while most of them are not only laborious and time consuming but also impressed by human errors. Human vision system is fast and accurate enough in this case but the problem is that the magnitude must be stated numerically to be reported and to be used for comparison between several mulches or mulches in different times. Interpretation of the extent perceived by vision system to numerals is possible by simulation of human vision system. Machine vision comprising image processing system can afford these jobs. This study aimed to evaluate the residue of mulch materials over a crop campaign in a processing tomato (Solanum lycopersicon L.) crop in Central Spain through image analysis. The mulch materials used were standard black polyethylene (PE), two biodegradable plastic mulches (BD1 and BD2), and one paper (PP1) were compared. Meanwhile the initial appearance of most of the mulches was sort of black PE, at the end of the experiment the materials appeared somewhat discoloured, soil and/or crop residue was impregnated being very difficult to completely remove them. A digital camera

  3. Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis

    SciTech Connect

    Jian, Siyang; Li, Jianwei; Chen, Ji; Wang, Gangsheng; Mayes, Melanie A.; Dzantor, Kudjo E.; Hui, Dafeng; Luo, Yiqi

    2016-07-08

    Nitrogen (N) fertilization affects the rate of soil organic carbon (SOC) decomposition by regulating extracellular enzyme activities (EEA). Extracellular enzymes have not been represented in global biogeochemical models. Understanding the relationships among EEA and SOC, soil N (TN), and soil microbial biomass carbon (MBC) under N fertilization would enable modeling of the influence of EEA on SOC decomposition. Based on 65 published studies, we synthesized the activities of α-1,4-glucosidase (AG), β-1,4-glucosidase (BG), β-d-cellobiosidase (CBH), β-1,4-xylosidase (BX), β-1,4-N-acetyl-glucosaminidase (NAG), leucine amino peptidase (LAP), urease (UREA), acid phosphatase (AP), phenol oxidase (PHO), and peroxidase (PEO) in response to N fertilization. Here, the proxy variables for hydrolytic C acquisition enzymes (C-acq), N acquisition (N-acq), and oxidative decomposition (OX) were calculated as the sum of AG, BG, CBH and BX; AG and LAP; PHO and PEO, respectively.

  4. Selection of the Methods of Soil Analysis for Phyto-available Arsenic

    NASA Astrophysics Data System (ADS)

    Yoon, Junghwan; Lee, Dan-Bi; Kim, Kwon-Rae; Kim, Won-Il; Kim, Kye-Hoon

    2016-04-01

    Arsenic (As) is a trace element of major public health concern. Many of As contaminated agricultural lands in the Republic of Korea (ROK) are located at the areas nearby abandoned mines. Therefore, management of contaminated agricultural lands is important for safe crop cultivation. In ROK, soils contaminated with As have managed according to the As concentration determined after aqua regia digestion (total As). Many soil scientists reported that management of As in soils by phyto-available As is more effective than that by total As for safety of the crop cultivation point-of-view since As concentration in crops has a significant correlation with phyto-available As. Therefore, this study was carried out to select method of soil analysis for phyto-available As. For that purpose, five extracting solutions (0.1M Ca(NO?), 0.1M (NH?)?HPO?), 0.5M EDTA, Mehlich 3, 0.5M NaHCO?) were examined with 35 soil samples used for cultivation of three crops (bean, red pepper, rice). Correlation analysis was conducted between phyto-available As concentrations in soils and As concentration in edible part of the crops. Results of the correlation analysis showed that phyto-available As concentrations in soils using Mehlich 3 solution and As concentrations in edible part of red pepper and rice were significantly correlated. For soils used for bean cultivation, Mehlich 3 (R

  5. Deep soil carbon dynamics are driven more by soil type than by climate: a worldwide meta-analysis of radiocarbon profiles.

    PubMed

    Mathieu, Jordane A; Hatté, Christine; Balesdent, Jérôme; Parent, Éric

    2015-11-01

    The response of soil carbon dynamics to climate and land-use change will affect both the future climate and the quality of ecosystems. Deep soil carbon (>20 cm) is the primary component of the soil carbon pool, but the dynamics of deep soil carbon remain poorly understood. Therefore, radiocarbon activity (Δ14C), which is a function of the age of carbon, may help to understand the rates of soil carbon biodegradation and stabilization. We analyzed the published 14C contents in 122 profiles of mineral soil that were well distributed in most of the large world biomes, except for the boreal zone. With a multivariate extension of a linear mixed-effects model whose inference was based on the parallel combination of two algorithms, the expectation-maximization (EM) and the Metropolis-Hasting algorithms, we expressed soil Δ14C profiles as a four-parameter function of depth. The four-parameter model produced insightful predictions of soil Δ14C as dependent on depth, soil type, climate, vegetation, land-use and date of sampling (R2=0.68). Further analysis with the model showed that the age of topsoil carbon was primarily affected by climate and cultivation. By contrast, the age of deep soil carbon was affected more by soil taxa than by climate and thus illustrated the strong dependence of soil carbon dynamics on other pedologic traits such as clay content and mineralogy.

  6. Structural and Spectral Characteristics of Amorphous Iron Sulfates

    NASA Astrophysics Data System (ADS)

    Sklute, E.; Jensen, H. B.; Rogers, D.; Reeder, R. J.

    2014-12-01

    Substantial evidence points to the existence of hydrated sulfate phases on the Martian surface1-3. In addition, the discovery of recurring slope lineae could point to an active brine hydrologic cycle on the surface4,5. The rapid dehydration of both hydrated sulfates and sulfate-rich brines can lead to the formation of amorphous sulfates. Evidence suggests that the Rocknest soil target and the Sheepbed mudstone interrogated by the Mars Science Laboratory at Gale crater contain ~30 wt.% XRD amorphous material that is rich in both sulfur and iron6. These factors have led us to consider hydrated amorphous iron sulfates as possible components in Martian surface materials. Amorphous iron sulfates were created through multiple synthesis routes, and then characterized with total x-ray scattering, TGA, SEM, visible/near-infrared (VNIR), thermal infrared (TIR), and Mössbauer techniques. We synthesized amorphous ferric sulfates (Fe(III)2(SO4)3•~5-8H2O) from sulfate-saturated fluids via two pathways: vacuum dehydration and exposure to low relative humidity (<11%) using a LiCl buffer. Amorphous ferrous sulfate (Fe(II)SO4•~1H2O) was synthesized via vacuum dehydration of melanterite (Fe(II) SO4•7H2O). We find that both the ferric and ferrous sulfates synthesized from these methods lack long-range (>10Å) order, and thus are truly amorphous. VNIR and TIR spectral data for the amorphous sulfates display broad, muted features consistent with structural disorder and are spectrally distinct from all crystalline sulfates considered for comparison. Mössbauer spectra are also distinct from all crystalline phase spectra available for comparison. The amorphous sulfates should be distinguishable based on the position of their Fe-related absorptions in the visible range and their spectral characteristics in the TIR. In the NIR, which is the spectral range that has primarily been used to detect sulfates on Mars, the bands associated with hydration at ~1.4 and 1.9 μm are significantly

  7. Reference values for soil structural degradation evaluation: an approach using shrinkage analysis

    NASA Astrophysics Data System (ADS)

    Johannes, Alice; Weisskopf, Peter; Schulin, Rainer; Boivin, Pascal

    2015-04-01

    Introduction Diagnosis of soil compaction and other soil structural degradation require reference threshold values defining non-degraded soil structure versus degraded soil structure. Large-scale application, e.g. for soil protection regulation, require accurate, cost-efficient and robust methods providing meaningful information with respect to soil quality. The shrinkage curve analysis (ShC)(Braudeau et al., 2004) does not only provide relevant parameters for soil functions such as water and air content of structural porosity but also holds promises to fulfil these requirements. Our objective was to test the potential of ShC analysis to define reference values for soil structural degradation at Swiss scale. Material and Methods Agricultural soils of the most common soil order on the Swiss plateau, namely cambi-luvisol, were sampled. Undisturbed samples were collected from topsoil at 200 locations from spring 2012 to fall 2014 on a large area (240 km) across Switzerland. Three types of soil managements were represented, namely permanent pasture (PP), conventional tillage and no-till. Only soils showing no evidence of structural degradation, as assessed visually and according to a VESS score smaller than 3 (Ball et al., 2007), were sampled. Compaction, erosion, waterlogging and poor degradation of organic matter were criteria to discard sampling locations. The undisturbed soil samples were analysed for SOC, texture, CEC and ShC, from which a set of parameters defining the soil porosities and hydrostructural stability was obtained. Results and Discussion The texture properties were similar between the different soil management, with clay content ranging from 10 to 35%. SOC content ranged from 0.5 to 4.5% and was significantly larger in average for PP, though the ranges were largely overlapping amongst the 3 soil managements. ShC parameters were found to be highly determined by SOC, with the R2 of the regressions usually over 70%, regardless of soil management, large

  8. Multiscale analysis of surface soil moisture dynamics in a mesoscale catchment utilizing an integrated ecohydrological model

    NASA Astrophysics Data System (ADS)

    Korres, W.; Reichenau, T. G.; Schneider, K.

    2012-12-01

    Soil moisture is one of the fundamental variables in hydrology, meteorology and agriculture, influencing the partitioning of solar energy into latent and sensible heat flux as well as the partitioning of precipitation into runoff and percolation. Numerous studies have shown that in addition to natural factors (rainfall, soil, topography etc.) agricultural management is one of the key drivers for spatio-temporal patterns of soil moisture in agricultural landscapes. Interactions between plant growth, soil hydrology and soil nitrogen transformation processes are modeled by using a dynamically coupled modeling approach. The process-based ecohydrological model components of the integrated decision support system DANUBIA are used to identify the important processes and feedbacks determining soil moisture patterns in agroecosystems. Integrative validation of plant growth and surface soil moisture dynamics serves as a basis for a spatially distributed modeling analysis of surface soil moisture patterns in the northern part of the Rur catchment (1100 sq km), Western Germany. An extensive three year dataset (2007-2009) of surface soil moisture-, plant- (LAI, organ specific biomass and N) and soil- (texture, N, C) measurements was collected. Plant measurements were carried out biweekly for winter wheat, maize, and sugar beet during the growing season. Soil moisture was measured with three FDR soil moisture stations. Meteorological data was measured with an eddy flux station. The results of the model validation showed a very good agreement between the modeled plant parameters (biomass, green LAI) and the measured parameters with values between 0.84 and 0.98 (Willmotts index of agreement). The modeled surface soil moisture (0 - 20 cm) showed also a very favorable agreement with the measurements for winter wheat and sugar beet with an RMSE between 1.68 and 3.45 Vol.-%. For maize, the RMSE was less favorable particularly in the 1.5 months prior to harvest. The modeled soil

  9. Ultrasonic dispersion of soils for routine particle size analysis: recommended procedures

    SciTech Connect

    Heller, P.R.; Hayden, R.E.; Gee, G.W.

    1984-11-01

    Ultrasonic techniques were found to be more effective than standard mechanical techniques to disperse soils for routine particle-size analysis (i.e., using a dispersing agent and mechanical mixing). Soil samples were tested using an ultrasonic homogenizer at various power outputs. The samples varied widely in texture and mineralogy, and included sands, silts, clays, volcanic soils, and soils high in organic matter. A combination of chemical and ultrasonic dispersion techniques were used in all tests. Hydrometer techniques were used for particle-size analysis. For most materials tested, clay percentage values indicated that ultrasonic dispersion was more complete than mechanical dispersion. Soils high in volcanic ash or iron oxides showed 10 to 20 wt % more clay when using ultrasonic mixing rather than mechanical mixing. The recommended procedure requires ultrasonic dispersion of a 20- to 40-g sample for 15 min at 300 W with a 1.9-cm-diameter ultrasonic homogenizer. 12 references, 5 figures, 1 table.

  10. 50-Minute Experiment: Soil Analysis for High School Chemistry Students.

    ERIC Educational Resources Information Center

    Baruch, Gerard, Ed.; And Others

    1980-01-01

    Lists equipment and materials needed and procedures for analyzing soil, in which secondary school students experience practical applications to acid-base reactions, pH, oxidation-reduction, precipitation and solubility. (CS)

  11. Uranium-contaminated soils: Ultramicrotomy and electron beam analysis

    SciTech Connect

    Buck, E.C.; Dietz, N.L.; Bates, J.K.; Cunnane, J.C.

    1994-02-01

    Uranium-contaminated soils from the U.S. Department of Energy (DOE) Fernald Site, Ohio, have been examined by a combination of scanning electron microscopy with backscattered electron imaging (SEM/BSE) and analytical electron microscopy (AEM). The inhomogeneous distribution of particulate uranium phases in the soil required the development of a method for using ultramicrotomy to prepare transmission electron microscopy (TEM) thin sections of the SEM mounts. A water-miscible resin was selected that allowed comparison between SEM and TEM images, permitting representative sampling of the soil. Uranium was found in iron oxides, silicates (soddyite), phosphates (autunites), and fluorite (UO{sub 2}). No uranium was detected in association with phyllosilicates in the soil.

  12. Sulfate attack expansion mechanisms

    SciTech Connect

    Müllauer, Wolfram Beddoe, Robin E.; Heinz, Detlef

    2013-10-15

    A specially constructed stress cell was used to measure the stress generated in thin-walled Portland cement mortar cylinders caused by external sulfate attack. The effects of sulfate concentration of the storage solution and C{sub 3}A content of the cement were studied. Changes in mineralogical composition and pore size distribution were investigated by X-ray diffraction and mercury intrusion porosimetry, respectively. Damage is due to the formation of ettringite in small pores (10–50 nm) which generates stresses up to 8 MPa exceeding the tensile strength of the binder matrix. Higher sulfate concentrations and C{sub 3}A contents result in higher stresses. The results can be understood in terms of the effect of crystal surface energy and size on supersaturation and crystal growth pressure.

  13. Image Analysis and Classification Based on Soil Strength

    DTIC Science & Technology

    2016-08-01

    bearing capac- ity, is often obscured by other surface conditions, such as moisture and vegetation, although these are also indicators of soil strength...Testing and Materials CAVIS Clouds, Aerosols, Vapors, Ice, and Snow CBR California Bearing Ratio CIV Clegg Impact Value CRREL Cold Regions...WorldView-3 ERDC/CRREL TR-16-13 1 1 Introduction 1.1 Background The ability to determine physical soil properties, such as strength or bear - ing

  14. Modeling soil evaporation efficiency in a range of soil and atmospheric conditions using a meta-analysis approach

    NASA Astrophysics Data System (ADS)

    Merlin, O.; Stefan, V. G.; Amazirh, A.; Chanzy, A.; Ceschia, E.; Er-Raki, S.; Gentine, P.; Tallec, T.; Ezzahar, J.; Bircher, S.; Beringer, J.; Khabba, S.

    2016-05-01

    A meta-analysis data-driven approach is developed to represent the soil evaporative efficiency (SEE) defined as the ratio of actual to potential soil evaporation. The new model is tested across a bare soil database composed of more than 30 sites around the world, a clay fraction range of 0.02-0.56, a sand fraction range of 0.05-0.92, and about 30,000 acquisition times. SEE is modeled using a soil resistance (rss) formulation based on surface soil moisture (θ) and two resistance parameters rss,ref and θefolding. The data-driven approach aims to express both parameters as a function of observable data including meteorological forcing, cut-off soil moisture value θ1/2 at which SEE=0.5, and first derivative of SEE at θ1/2, named Δθ1/2-1. An analytical relationship between >(rss,ref;θefolding) and >(θ1/2;Δθ1/2-1>) is first built by running a soil energy balance model for two extreme conditions with rss = 0 and rss˜∞ using meteorological forcing solely, and by approaching the middle point from the two (wet and dry) reference points. Two different methods are then investigated to estimate the pair >(θ1/2;Δθ1/2-1>) either from the time series of SEE and θ observations for a given site, or using the soil texture information for all sites. The first method is based on an algorithm specifically designed to accomodate for strongly nonlinear SEE>(θ>) relationships and potentially large random deviations of observed SEE from the mean observed SEE>(θ>). The second method parameterizes θ1/2 as a multi-linear regression of clay and sand percentages, and sets Δθ1/2-1 to a constant mean value for all sites. The new model significantly outperformed the evaporation modules of ISBA (Interaction Sol-Biosphère-Atmosphère), H-TESSEL (Hydrology-Tiled ECMWF Scheme for Surface Exchange over Land), and CLM (Community Land Model). It has potential for integration in various land-surface schemes, and real calibration capabilities using combined thermal and microwave

  15. Virtually nonexistent correlation between the OH stretching frequency and the instantaneous geometry in the short hydrogen bond of sodium hydrogen bis(sulfate): advanced chemometrics analysis.

    PubMed

    Pirc, Gordana; Mavri, Janez; Novič, Marjana; Stare, Jernej

    2012-06-21

    We examined the correlation between the dynamically sampled anharmonic frequency of the OH stretching motion and the corresponding instantaneous geometric parameters associated with the structure of crystalline sodium hydrogen bis(sulfate), which is a benchmark system with an extremely short hydrogen bond. We analyzed the trajectory obtained by a conventional Car-Parrinello molecular dynamics simulation, followed by an a posteriori quantization of the proton motion. For statistical analysis we applied the established methodologies of multiple linear regression, principal component analysis, principal component regression, and Kohonen neural networks. No simple correlation scheme between the OH stretching frequency and any particular geometry parameter (or their combination) was found. In comparison to the established correlation schemes (e.g., Mikenda and Novak) that consider a series of systems, our study provides a complementary insight into the nature of hydrogen bonding of a single system, in the sense that it considers the important aspects of fluctuations of the environment and the resulting broadening of the OH stretching band, which cannot be adequately assessed by experiment. The absence of appreciable correlations gives strong evidence of the extreme complexity of short hydrogen bonding.

  16. Soil residue analysis and degradation of saflufenacil as affected by moisture content and soil characteristics

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objective of this study was to evaluate saflufenacil degradation and persistence in soils from rice regions under field capacity (non-flooded) and saturated (flooded) conditions. Saflufenacil dissolved in acetonitrile was added into pre-incubated samples at the rate of 2000 g ha-1. The amount of...

  17. Continuous versus pulse neutron induced gamma spectroscopy for soil carbon analysis.

    PubMed

    Kavetskiy, A; Yakubova, G; Torbert, H A; Prior, S A

    2015-02-01

    Neutron induced gamma spectra analysis (NGA) provides a means of measuring carbon in large soil volumes without destructive sampling. Calibration of the NGA system must account for system background and the interference of other nuclei on the carbon peak at 4.43 MeV. Accounting for these factors produced measurements in agreement with theoretical considerations. The continuous NGA mode was twice as fast and just as accurate as the pulse mode, thus this mode was preferable for routine soil carbon analysis.

  18. [Investigation and canonical correspondence analysis of salinity contents in secondary salinization greenhouse soils in Shanghai suburb].

    PubMed

    Tang, Dong; Mao, Liang; Zhi, Yue-e; Zhang, Jin-Zhong; Zhou, Pei; Chai, Xiao-Tong

    2014-12-01

    The salinity characteristics of greenhouse soils with cropping obstacles in Shanghai suburb were investigated and analyzed. The salinity contents of the salinization greenhouse soils showed a trend of first increasing and then decreasing with the increasing cropping duration. The salinized soils mainly included slightly salted, mildly salted and salted soils, which accounted for 17.39%, 56.52% and 13.04%, respectively. Among them, the degree of salinity in greenhouse soil planted with asparagus in Chongming County was the highest. Among the salt ions in greenhouse soils, the cations were mainly Ca2+ and Na+, while the anions were mainly NO3- and SO4(2-). The degree of salinity was mainly influenced by fertilization mode, cropping duration, crop type and management level, which led to the great variation in the salinity contents and salt ions. Canonical correspondence analysis found that the contents of Ca2+, Mg2+ and NO3- in greenhouse soils were greatly affected by cropping duration, and the degree of salinity would be enhanced and attenuated with long-term application of single fertilizer and mixed application of chemical fertilizer and organic manure, respectively. The greenhouse soils in Shanghai suburb could be classified as four patterns influenced by the relationship between salinity ions and samples, and the most soils were influenced by Ca2+, Mg2+, NO3- and Cl-, which required to be primarily controlled.

  19. Analysis of Pollution Hazard Intensity: A Spatial Epidemiology Case Study of Soil Pb Contamination.

    PubMed

    Ha, Hoehun; Rogerson, Peter A; Olson, James R; Han, Daikwon; Bian, Ling; Shao, Wanyun

    2016-09-14

    Heavy industrialization has resulted in the contamination of soil by metals from anthropogenic sources in Anniston, Alabama. This situation calls for increased public awareness of the soil contamination issue and better knowledge of the main factors contributing to the potential sources contaminating residential soil. The purpose of this spatial epidemiology research is to describe the effects of physical factors on the concentration of lead (Pb) in soil in Anniston AL, and to determine the socioeconomic and demographic characteristics of those residing in areas with higher soil contamination. Spatial regression models are used to account for spatial dependencies using these explanatory variables. After accounting for covariates and multicollinearity, results of the analysis indicate that lead concentration in soils varies markedly in the vicinity of a specific foundry (Foundry A), and that proximity to railroads explained a significant amount of spatial variation in soil lead concentration. Moreover, elevated soil lead levels were identified as a concern in industrial sites, neighborhoods with a high density of old housing, a high percentage of African American population, and a low percent of occupied housing units. The use of spatial modelling allows for better identification of significant factors that are correlated with soil lead concentrations.

  20. Analysis of Pollution Hazard Intensity: A Spatial Epidemiology Case Study of Soil Pb Contamination

    PubMed Central

    Ha, Hoehun; Rogerson, Peter A.; Olson, James R.; Han, Daikwon; Bian, Ling; Shao, Wanyun

    2016-01-01

    Heavy industrialization has resulted in the contamination of soil by metals from anthropogenic sources in Anniston, Alabama. This situation calls for increased public awareness of the soil contamination issue and better knowledge of the main factors contributing to the potential sources contaminating residential soil. The purpose of this spatial epidemiology research is to describe the effects of physical factors on the concentration of lead (Pb) in soil in Anniston AL, and to determine the socioeconomic and demographic characteristics of those residing in areas with higher soil contamination. Spatial regression models are used to account for spatial dependencies using these explanatory variables. After accounting for covariates and multicollinearity, results of the analysis indicate that lead concentration in soils varies markedly in the vicinity of a specific foundry (Foundry A), and that proximity to railroads explained a significant amount of spatial variation in soil lead concentration. Moreover, elevated soil lead levels were identified as a concern in industrial sites, neighborhoods with a high density of old housing, a high percentage of African American population, and a low percent of occupied housing units. The use of spatial modelling allows for better identification of significant factors that are correlated with soil lead concentrations. PMID:27649221

  1. Dynamics of sulfate and nitrate dry deposition associated with pollen

    SciTech Connect

    Khalili, E.K.

    1988-01-01

    A field study of pollen dispersion and deposition from a remote forested area in Northern Wisconsin has been undertaken. Although the experiments constitute a case study in Wisconsin, the experimental site was chosen, which represents much of the Eastern US and Europe where acid rain is considered an important environmental problem. Measurements of dry deposition of pollen were made during the pollination season (May and June, 1987). Deposited particles were weighted to determine mass fluxes, then washed and subjected to ion chromatographic analysis for sulfate and nitrate. Ambient concentration of pollen were measured by a coarse particle sampler (Noll Inertial Rotary Impact) during the same time period. The chemical analysis of pollen species collected around the sampling site as well as commercially available pollen demonstrated that sulfate and nitrate were present on all pollen samples. Many trace metals such as Fe, Al, Zn, Cu, Mn, Cd, Pb, Ca, and Si and organic acids were quantified. It was hypothesized that pollen accumulate extraneous amounts of non-essential, as well as essential elements from the soil supplying nutrient. Therefore, pollen can be used as a fingerprint for the availability and the level of contamination of a particular element in the forest soil environment. A model developed for measurement of coarse particle dry deposition was utilized to measure the pollen dry deposition velocity. It was shown that depositional velocity of pollen exceeds the settling velocity by a factor of 3 to 4, and both V{sub d} and fluxes of pollen grains increase with wind speed. Finally, the role of pollen dispersion and deposition has been discussed and emphasized for modeling of lake acidification in forested region.

  2. Retrospective analysis of an archived soil collection. II. Cadmium.

    PubMed

    Jones, K C; Symon, C J; Johnston, A E

    1987-11-01

    Soil samples collected and stored since the mid-1800s to the present day have been analysed recently for Cd. The samples from long-term experiments under permanent grassland or arable crops at Rothamsted Experimental Station (U.K.) were selected to investigate time trends in elemental composition, due either solely to atmospheric deposition or to a combination of atmospheric deposition and various soil treatments. Increases in soil Cd of 27-55% since the 1850s due to atmospheric deposition were observed. This corresponds to an increase in the soil plough layer Cd concentration of between 0.7 and 1.9 micrograms kg-1 year-1 and is equivalent to an increase of 1.9-5.4 g Cd ha-1 year-1. The changes in soil Cd concentrations since 1846 at one control site corresponded well to predicted increases in the plough layer Cd burden based on assumptions about the temporal trends in atmospheric Cd emissions. In addition, sub-samples of a selection of rock phosphates of known origin and superphosphates, mainly from one supplier, collected and stored in the archive from 1925 onwards were also analysed for Cd. The concentrations ranged from 3.6 to 92 (mean 36) mg Cd kg-1 for rock phosphates and from 3.3 to 40 (9.7) mg kg-1 for superphosphates. On the basis of these data and known application rates the estimated input of Cd to P-treated plots at Rothamsted was 2 g ha-1 year-1, but there was little further increase in soil Cd due to this addition in three long-term arable experiments where soil pH was greater than 6.5. On P-treated plots the mean increase in soil Cd was 1.2 micrograms kg-1 year-1, which is equivalent to an increase in the plough layer burden of 3.1 g Cd ha-1 year-1. By contrast, P-treated soils under permanent grassland with a higher organic matter content and lower pH have increased their Cd content by 7.2 g ha-1 year-1. When permanent grassland soils ranging in pH from 5 to 7 were examined it was found that organic matter had a larger effect on Cd concentration

  3. NMR metabolomics for soil analysis provide complementary, orthogonal data to MIR and traditional soil chemistry approaches--a land use study.

    PubMed

    Rochfort, Simone; Ezernieks, Vilnis; Mele, Pauline; Kitching, Matt

    2015-09-01

    The present study was designed to analyse soils by different methodologies to determine the range of traits that could be investigated for the study of environmental soil samples. Proton nuclear magnetic resonance spectroscopy ((1) H NMR) was employed for metametabolomic analysis of soils from agricultural systems (managed) or from soils in a native state (remnant). The metabolomic methodologies employed (grinding and extraction with sonication) are capable of breaking up cell walls and so enabled characterisation of both extracellular and intracellular components of soil. Diffuse mid-infrared spectroscopy (MIR) data was obtained for the same sample sets, and in addition, elemental composition was determined by conventional laboratory chemical testing methods. Also investigated was the antibiotic activity of the soil extracts. Resilient or suppressive soils are valued in the agricultural setting as they convey disease resistance (against bacterial and fungal pathogens) to crop plants. In order to test if any such biological activity could be detected in the soils, the extracts were tested against the bacteria Bacillus subtilis. Several extracts showed strong growth inhibition against the bacteria with the most active clustered together in principle component analysis (PCA) of the metabolomic data. The study showed that the NMR metabolomic approach corresponds more accurately to land use and biochemical properties potentially associated with suppression, while MIR data correlated well to inorganic chemical analysis. Thus, the study demonstrates the utility in combining these spectroscopic methods for soil analysis.

  4. Stratified drought analysis using a stochastic ensemble of simulated and in-situ soil moisture observations

    NASA Astrophysics Data System (ADS)

    Sehgal, Vinit; Sridhar, Venkataramana; Tyagi, Aditya

    2017-02-01

    This study proposes a multi-wavelet Bayesian ensemble of two Land Surface Models (LSMs) using in-situ observations for accurate estimation of soil moisture for Contiguous United States (CONUS). In the absence of a continuous, accurate in-situ soil moisture dataset at high spatial resolution, an ensemble of Noah and Mosaic LSMs is derived by performing a Bayesian Model Averaging (BMA) of several wavelet-based multi-resolution regression models (WR) of the simulated soil moisture from the LSMs and in-situ volumetric soil moisture dataset obtained from the U.S. Climate Reference Network (USCRN) field stations. This provides a proxy to the in-situ soil moisture dataset at 1/8th degree spatial resolution called Hybrid Soil Moisture (HSM) for three soil layers (1-10 cm, 10-40 cm and 40-100 cm) for the CONUS. The derived HSM is used further to study the layer-wise response of soil moisture to drought, highlighting the necessity of the ensemble approach and soil profile perspective for drought analysis. A correlation analysis between HSM, the long-term (PDSI, PHDI, SPI-9, SPI-12 and SPI-24) and the short-term (Palmer Z index, SPI-1 and SPI-6) drought indices is carried out for the nine climate regions of the U.S. indicating a higher sensitivity of soil moisture to drought conditions for the Southern U.S. Furthermore, a layer-wise soil moisture percentile approach is proposed and applied for drought reconstruction in CONUS with a focus on the Southern U.S. for the year 2011.

  5. Heavy metal accumulation and source analysis in greenhouse soils of Wuwei District, Gansu Province, China.

    PubMed

    Bai, L Y; Zeng, X B; Su, S M; Duan, R; Wang, Y N; Gao, X

    2015-04-01

    Greenhouse soils and arable (wheat field) soil samples were collected to identify the effects of greenhouse cultivation on the accumulation of six heavy metals (Cd, Cu, Zn, Pb, Cr, and Ni) and to evaluate the likely sources responsible for heavy metal accumulation in the irrigated desert soils of Wuwei District, China. The results indicated that the mean concentrations of Cd, Cu, Zn, Pb, Cr, and Ni were 0.421, 33.85, 85.31, 20.76, 53.12, and 28.59 mg kg(-1), respectively. The concentrations of Cd, Cu, and Zn in greenhouse soils were 60, 23, and 14% higher than those in arable soils and 263, 40, and 25% higher than background concentrations of natural soils in the study area, respectively. These results indicated that Cd, Cu, and Zn accumulation occurred in the greenhouse soils, and Cd was the most problematically accumulated heavy metal, followed by Cu and Zn. There was a significant positive correlation between the concentrations of Cd, Cu, and Zn in greenhouse soils and the number of years under cultivation (P < 0.05). Greenhouse cultivation had little impact on the accumulation of Cr, Ni, or Pb. Correlation analysis and principal component analysis suggested that the accumulation of Cd, Cu, and Zn in greenhouse soils resulted mainly from fertilizer applications. Our results indicated that the excessive and long-term use of fertilizers and livestock manures with high heavy metal levels leads to the accumulation of heavy metals in soils. Therefore, rational fertilization programs and reductions in the concentrations of heavy metals in both fertilizers and manure must be recommended to maintain a safe concentration of heavy metals in greenhouse soils.

  6. An improved method for field extraction and laboratory analysis of large, intact soil cores

    USGS Publications Warehouse

    Tindall, J.A.; Hemmen, K.; Dowd, J.F.

    1992-01-01

    Various methods have been proposed for the extraction of large, undisturbed soil cores and for subsequent analysis of fluid movement within the cores. The major problems associated with these methods are expense, cumbersome field extraction, and inadequate simulation of unsaturated flow conditions. A field and laboratory procedure is presented that is economical, convenient, and simulates unsaturated and saturated flow without interface flow problems and can be used on a variety of soil types. In the field, a stainless steel core barrel is hydraulically pressed into the soil (30-cm diam. and 38 cm high), the barrel and core are extracted from the soil, and after the barrel is removed from the core, the core is then wrapped securely with flexible sheet metal and a stainless mesh screen is attached to the bottom of the core for support. In the laboratory the soil core is set atop a porous ceramic plate over which a soil-diatomaceous earth slurry has been poured to assure good contact between plate and core. A cardboard cylinder (mold) is fastened around the core and the empty space filled with paraffin wax. Soil cores were tested under saturated and unsaturated conditions using a hanging water column for potentials ???0. Breakthrough curves indicated that no interface flow occurred along the edge of the core. This procedure proved to be reliable for field extraction of large, intact soil cores and for laboratory analysis of solute transport.

  7. Microprofiling of nitrogen patches in paddy soil: Analysis of spatiotemporal nutrient heterogeneity at the microscale.

    PubMed

    Li, Yilin; Kronzucker, Herbert J; Shi, Weiming

    2016-06-06

    Flooded paddy soil ecosystems in the tropics support the cultivation of the majority of the world's leading crop, rice, and nitrogen (N) availability in the paddy-soil rooting zone limits rice production more than any other nutritional factor. Yet, little is known about the dynamic response of paddy soil to N-fertiliser application, in terms of horizontal and vertical patchiness in N distribution and transformation. Here, we present a microscale analysis of the profile of ammonium (NH4(+)) and nitrate (NO3(-)), nitrification, oxygen (O2water and O2soil), and pH (pHwater and pHsoil) in paddy soils, collected from two representative rice-production areas in subtropical China. NH4(+) and NO3(-) exhibited dramatic spatiotemporal profiles within N patches on the microscale. We show that pHsoil became constant at 1.0-3.5 mm depth, and O2soil became undetectable at 1.7-4.0 mm. Fertiliser application significantly increased pH, and decreased O2, within N patches. Path analysis showed that the factors governing nitrification scaled in the order: pHwater > pHsoil > NH4(+) > O2water > NO3(-) > O2soil. We discuss the soil properties that decide the degree of nutrient patchiness within them and argue that such knowledge is critical to intelligent appraisals of nutrient-use efficiencies in the field.

  8. Integrated analysis of climate, soil, topography and vegetative growth in Iberian viticultural regions.

    PubMed

    Fraga, Helder; Malheiro, Aureliano C; Moutinho-Pereira, José; Cardoso, Rita M; Soares, Pedro M M; Cancela, Javier J; Pinto, Joaquim G; Santos, João A

    2014-01-01

    The Iberian viticultural regions are convened according to the Denomination of Origin (DO) and present different climates, soils, topography and management practices. All these elements influence the vegetative growth of different varieties throughout the peninsula, and are tied to grape quality and wine type. In the current study, an integrated analysis of climate, soil, topography and vegetative growth was performed for the Iberian DO regions, using state-of-the-art datasets. For climatic assessment, a categorized index, accounting for phenological/thermal development, water availability and grape ripening conditions was computed. Soil textural classes were established to distinguish soil types. Elevation and aspect (orientation) were also taken into account, as the leading topographic elements. A spectral vegetation index was used to assess grapevine vegetative growth and an integrated analysis of all variables was performed. The results showed that the integrated climate-soil-topography influence on vine performance is evident. Most Iberian vineyards are grown in temperate dry climates with loamy soils, presenting low vegetative growth. Vineyards in temperate humid conditions tend to show higher vegetative growth. Conversely, in cooler/warmer climates, lower vigour vineyards prevail and other factors, such as soil type and precipitation acquire more important roles in driving vigour. Vines in prevailing loamy soils are grown over a wide climatic diversity, suggesting that precipitation is the primary factor influencing vigour. The present assessment of terroir characteristics allows direct comparison among wine regions and may have great value to viticulturists, particularly under a changing climate.

  9. Integrated Analysis of Climate, Soil, Topography and Vegetative Growth in Iberian Viticultural Regions

    PubMed Central

    Fraga, Helder; Malheiro, Aureliano C.; Moutinho-Pereira, José; Cardoso, Rita M.; Soares, Pedro M. M.; Cancela, Javier J.; Pinto, Joaquim G.; Santos, João A.

    2014-01-01

    The Iberian viticultural regions are convened according to the Denomination of Origin (DO) and present different climates, soils, topography and management practices. All these elements influence the vegetative growth of different varieties throughout the peninsula, and are tied to grape quality and wine type. In the current study, an integrated analysis of climate, soil, topography and vegetative growth was performed for the Iberian DO regions, using state-of-the-art datasets. For climatic assessment, a categorized index, accounting for phenological/thermal development, water availability and grape ripening conditions was computed. Soil textural classes were established to distinguish soil types. Elevation and aspect (orientation) were also taken into account, as the leading topographic elements. A spectral vegetation index was used to assess grapevine vegetative growth and an integrated analysis of all variables was performed. The results showed that the integrated climate-soil-topography influence on vine performance is evident. Most Iberian vineyards are grown in temperate dry climates with loamy soils, presenting low vegetative growth. Vineyards in temperate humid conditions tend to show higher vegetative growth. Conversely, in cooler/warmer climates, lower vigour vineyards prevail and other factors, such as soil type and precipitation acquire more important roles in driving vigour. Vines in prevailing loamy soils are grown over a wide climatic diversity, suggesting that precipitation is the primary factor influencing vigour. The present assessment of terroir characteristics allows direct comparison among wine regions and may have great value to viticulturists, particularly under a changing climate. PMID:25251495

  10. Metagenomic analysis of the rhizosphere soil microbiome with respect to phytic acid utilization.

    PubMed

    Unno, Yusuke; Shinano, Takuro

    2013-01-01

    While phytic acid is a major form of organic phosphate in many soils, plant utilization of phytic acid is normally limited; however, culture trials of Lotus japonicus using experimental field soil that had been managed without phosphate fertilizer for over 90 years showed significant usage of phytic acid applied to soil for growth and flowering and differences in the degree of growth, even in the same culture pot. To understand the key metabolic processes involved in soil phytic acid utilization, we analyzed rhizosphere soil microbial communities using molecular ecological approaches. Although molecular fingerprint analysis revealed changes in the rhizosphere soil microbial communities from bulk soil microbial community, no clear relationship between the microbiome composition and flowering status that might be related to phytic acid utilization of L. japonicus could be determined. However, metagenomic analysis revealed changes in the relative abundance of the classes Bacteroidetes, Betaproteobacteria, Chlorobi, Dehalococcoidetes and Methanobacteria, which include strains that potentially promote plant growth and phytic acid utilization, and some gene clusters relating to phytic acid utilization, such as alkaline phosphatase and citrate synthase, with the phytic acid utilization status of the plant. This study highlights phylogenetic and metabolic features of the microbial community of the L. japonicus rhizosphere and provides a basic understanding of how rhizosphere microbial communities affect the phytic acid status in soil.

  11. Integrated Analysis of Climate, Soil, Topography and Vegetative Growth in Iberian Viticultural Regions

    NASA Astrophysics Data System (ADS)

    Fraga, Helder; Malheiro, Aureliano C.; Moutinho-Pereira, José; Cardoso, Rita M.; Soares, Pedro M. M.; Cancela, Javier J.; Pinto, Joaquim G.; Santos, João A.

    2015-04-01

    The Iberian viticultural regions are convened according to the Denomination of Origin (DO) and present different climates, soils, topography and management practices. All these elements influence the vegetative growth of different varieties throughout the peninsula, and are tied to grape quality and wine type. In the current study, an integrated analysis of climate, soil, topography and vegetative growth was performed for the Iberian DO regions, using state-of-the-art datasets. For climatic assessment, a categorized index, accounting for phenological/thermal development, water availability and grape ripening conditions was computed. Soil textural classes were established to distinguish soil types. Elevation and aspect (orientation) were also taken into account, as the leading topographic elements. A spectral vegetation index was used to assess grapevine vegetative growth and an integrated analysis of all variables was performed. The results showed that the integrated climate-soil-topography influence on vine performance is evident. Most Iberian vineyards are grown in temperate dry climates with loamy soils, presenting low vegetative growth. Vineyards in temperate humid conditions tend to show higher vegetative growth. Conversely, in cooler/warmer climates, lower vigour vineyards prevail and other factors, such as soil type and precipitation acquire more important roles in driving vigour. Vines in prevailing loamy soils are grown over a wide climatic diversity, suggesting that precipitation is the primary factor influencing vigour. The present assessment of terroir characteristics allows direct comparison among wine regions and may have great value to viticulturists, particularly under a changing climate.

  12. Analysis of spatiotemporal soil moisture patterns at the catchment scale using a wireless sensor network

    NASA Astrophysics Data System (ADS)

    Bogena, Heye R.; Huisman, Johan A.; Rosenbaum, Ulrike; Weuthen, Ansgar; Vereecken, Harry

    2010-05-01

    Soil water content plays a key role in partitioning water and energy fluxes and controlling the pattern of groundwater recharge. Despite the importance of soil water content, it is not yet measured in an operational way at larger scales. The aim of this paper is to present the potential of real-time monitoring for the analysis of soil moisture patterns at the catchment scale using the recently developed wireless sensor network SoilNet [1], [2]. SoilNet is designed to measure soil moisture, salinity and temperature in several depths (e.g. 5, 20 and 50 cm). Recently, a small forest catchment Wüstebach (~27 ha) has been instrumented with 150 sensor nodes and more than 1200 soil sensors in the framework of the Transregio32 and the Helmholtz initiative TERENO (Terrestrial Environmental Observatories). From August to November 2009, more than 6 million soil moisture measurements have been performed. We will present first results from a statistical and geostatistical analysis of the data. The observed spatial variability of soil moisture corresponds well with the 800-m scale variability described in [3]. The very low scattering of the standard deviation versus mean soil moisture plots indicates that sensor network data shows less artificial soil moisture variations than soil moisture data originated from measurement campaigns. The variograms showed more or less the same nugget effect, which indicates that the sum of the sub-scale variability and the measurement error is rather time-invariant. Wet situations showed smaller spatial variability, which is attributed to saturated soil water content, which poses an upper limit and is typically not strongly variable in headwater catchments with relatively homogeneous soil. The spatiotemporal variability in soil moisture at 50 cm depth was significantly lower than at 5 and 20 cm. This finding indicates that the considerable variability of the top soil is buffered deeper in the soil due to lateral and vertical water fluxes

  13. Multiscale Analysis of Soil Porosity from Hg Injection Curves in Soils from Minas Gerais, Brazil

    NASA Astrophysics Data System (ADS)

    Vidal Vázquez, E.; Miranda, J. G. V.; Paz-Ferreiro, J.

    2012-04-01

    The soil pore space is a continuum extremely variable in size, including structures smaller than nanometres and as large as macropores or cracks with millimetres or even centimetres size. Pore size distributions (PSDs) affects important soil functions, such as transmission and storage of water, and root growth. Direct and indirect measurements of PSDs are currently used to characterize soil structure. Mercury injection porosimetry is useful for assessing equivalent pore size diameters in the range from about 0,5 nm to 100 μm. Here, the multifractal formalism was employed to describe Hg injection curves measured in duplicate samples collected on 54 horizons from 19 profiles in Minas Gerais state, Brazil. Ten of the studied profiles were classified as Ferralsols (Latosols, Oxisols). Besides these, other wide different soil groups were sampled, including Nitisol, Acrisol, Alisol, Luvisol, Planosol, Cambisol, Andosol and Leptosol. Clay content varied from 4 to 86% and pore volume in the range from 100 to 0.005 μm was between 5.52 a 53.76 cm3100g-1. All the horizons taken on Ferralsols and Nitisols as well as in Bt argic horizons from Acrisol Alisol, Luvisol and Planosol clearly showed a bimodal pore size distribution. Pore volume in the range from 100 to 0.005 μm and microporosity (0,2-0.005 μm) showed a significant relationship with clay content an Al2O3. All the Hg injection data sets studied soil showed remarkably good scaling trends and could be fitted reasonably well with multifractal models. The capacity dimensions, D0, was not significantly different from the Euclidean dimension. The entropy dimension, D1, varied from 0.590 to 0.946 , whereas the Hölder exponent of order zero, α0was between 1.027 and 1.451, and these two parameters showed a lineal negatives relationship, as expected. The highest D1 values, ranging from 0.913 to 0.980, were obtained for the Leptosol, whereas the lowest D1 values, ranging from 0.641 to 0.766 corresponded to the Nitisol. This

  14. Trace element analysis of soil type collected from the Manjung and central Perak

    SciTech Connect

    Azman, Muhammad Azfar Hamzah, Suhaimi; Rahman, Shamsiah Abdul; Elias, Md Suhaimi; Abdullah, Nazaratul Ashifa; Hashim, Azian; Shukor, Shakirah Abd; Kamaruddin, Ahmad Hasnulhadi Che

    2015-04-29

    Trace elements in soils primarily originated from their parent materials. Parents’ material is the underlying geological material that has been undergone different types of chemical weathering and leaching processes. Soil trace elements concentrations may be increases as a result of continuous input from various human activities, including power generation, agriculture, mining and manufacturing. This paper describes the Neutron Activation Analysis (NAA) method used for the determination of trace elements concentrations in part per million (ppm) present in the terrestrial environment soil in Perak. The data may indicate any contamination of trace elements contributed from human activities in the area. The enrichment factors were used to check if there any contamination due to the human activities (power plants, agricultural, mining, etc.) otherwise the values would serve as a baseline data for future study. The samples were collected from 27 locations of different soil series in the area at two different depths: the top soil (0-15cm) and the sub soil (15-30cm). The collected soil samples were air dried at 60°C and passed through 2 µm sieve. Instrumental Neutron Activation Analysis (NAA) has been used for the determination of trace elements. Samples were activated in the Nuclear Malaysia TRIGA Mark II reactor followed by gamma spectrometric analysis. By activating the stable elements in the samples, the elements can be determined from the intensities of gamma energies emitted by the respected radionuclides.

  15. To identify the important soil properties affecting dinoseb adsorption with statistical analysis.

    PubMed

    Guan, Yiqing; Wei, Jianhui; Zhang, Danrong; Zu, Mingjuan; Zhang, Liru

    2013-01-01

    Investigating the influences of soil characteristic factors on dinoseb adsorption parameter with different statistical methods would be valuable to explicitly figure out the extent of these influences. The correlation coefficients and the direct, indirect effects of soil characteristic factors on dinoseb adsorption parameter were analyzed through bivariate correlation analysis, and path analysis. With stepwise regression analysis the factors which had little influence on the adsorption parameter were excluded. Results indicate that pH and CEC had moderate relationship and lower direct effect on dinoseb adsorption parameter due to the multicollinearity with other soil factors, and organic carbon and clay contents were found to be the most significant soil factors which affect the dinoseb adsorption process. A regression is thereby set up to explore the relationship between the dinoseb adsorption parameter and the two soil factors: the soil organic carbon and clay contents. A 92% of the variation of dinoseb sorption coefficient could be attributed to the variation of the soil organic carbon and clay contents.

  16. Aluminum Sulfate 18 Hydrate

    ERIC Educational Resources Information Center

    Young, Jay A.

    2004-01-01

    A chemical laboratory information profile (CLIP) of the chemical, aluminum sulfate 18 hydrate, is presented. The profile lists physical and harmful properties, exposure limits, reactivity risks, and symptoms of major exposure for the benefit of teachers and students using the chemical in the laboratory.

  17. Hydrazine/Hydrazine sulfate

    Integrated Risk Information System (IRIS)

    Hydrazine / Hydrazine sulfate ; CASRN 302 - 01 - 2 Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard Assessments for Non

  18. The influence of Alpine soil properties on shallow movement hazards, investigated through factor analysis

    NASA Astrophysics Data System (ADS)

    Stanchi, S.; Freppaz, M.; Zanini, E.

    2012-06-01

    movements involving the upper soil horizons. We assessed a great number of soil properties that are known to be related to vulnerability to the main hazards present in the area. These properties were evaluated at the two depths and a factor analysis was performed to simplify the dataset interpretation, and to hypothesise the most decisive parameters that were potentially related to vulnerability. The factors (soil structure, aggregation, consistency, texture and parent material, cation exchange complex and other chemical properties) were a first step towards identifying soil quality indexes in the studied environment.

  19. Removal of Sulfate Ion From AN-107 by Evaporation

    SciTech Connect

    GJ Lumetta; GS Klinger; DE Kurath; RL Sell; LP Darnell; LR Greenwood; CZ Soderquist; MJ Steele; MW Urie; JJ Wagner

    2000-08-02

    Hanford low-activity waste solutions contain sulfate, which can cause accelerated corrosion of the vitrification melter and unacceptable operating conditions. A method is needed to selectively separate sulfate from the waste. An experiment was conducted to evaluate evaporation for removing sulfate ion from Tank AN-107 low-activity waste. Two evaporation steps were performed. In the first step, the volume was reduced by 55% while in the second step, the liquid volume was reduced another 22%. Analysis of the solids precipitated during these evaporations revealed that large amounts of sodium nitrate and nitrite co-precipitated with sodium sulfate. Many other waste components precipitated as well. It can be concluded that sulfate removal by precipitation is not selective, and thus, evaporation is not a viable option for removing sulfate from the AN-107 liquid.

  20. Sulfation of phenylephrine by the human cytosolic sulfotransferases.

    PubMed

    Yamamoto, Akihiro; Kim, Jiwan; Liu, Ming-Yih; Kurogi, Katsuhisa; Sakakibara, Yoichi; Suiko, Masahito; Liu, Ming-Cheh

    2014-01-01

    Previous studies had demonstrated that sulfation constituted a major pathway for the metabolism of phenylephrine in vivo. The current study was designed to identify the major human SULT(s) responsible for the sulfation of phenylephrine. Of the twelve human SULTs analyzed, SULT1A3 displayed the strongest sulfating activity toward phenylephrine. The enzyme exhibited a pH optimum spanning 7 - 10.5. Kinetic analysis revealed that SULT1A3- mediated sulfation of phenylephrine occurred in the same order of magnitude compared with that previously reported for SULT1A3-mediated sulfation of dopamine. Moreover, sulfation of phenylephrine was shown to occur in HepG2 cells under metabolic setting. Collectively, these results provided useful information concerning the biochemical basis underlying the metabolism of phenylephrine in vivo as previously reported.

  1. Synthesis and characterization of novel cellulose ether sulfates.

    PubMed

    Rohowsky, Juta; Heise, Katja; Fischer, Steffen; Hettrich, Kay

    2016-05-20

    The synthesis and characterization of novel cellulose sulfate derivatives was reported. Various cellulose ethers were prepared in a homogeneous reaction with common sulfating agents. The received product possess different properties in dependence on the reaction conditions like sulfating agent, solvent, reaction time and reaction temperature. The cellulose ether sulfates are all soluble in water, they rheological behavior could be determined by viscosity measurements and the determination of the sulfur content by elemental analysis lead to a resulting degree of substitution ascribed to sulfate groups (DSSul) of the product. A wide range of products from DSSul 0.1 to DSSul 2.7 will be obtained. Furthermore the cellulose sulfate ethers could be characterized by Raman spectroscopy.

  2. Animating the biodynamics of soil thickness using process vector analysis: a dynamic denudation approach to soil formation

    NASA Astrophysics Data System (ADS)

    Johnson, D. L.; Domier, J. E. J.; Johnson, D. N.

    2005-04-01

    This paper expands the dynamic denudation framework of landscape evolution by providing new process insights and details on how soil and its signature morphological feature, the biomantle, form and function in the environment. We examine soils and their biomantles from disparate parts of the world, from the tropics through midlatitudes and hyperarid through perhumid, a range that exhibits varying environments for, and of, life. We then explicate the process pathways that cause soils to thicken and thin, and to even disappear, then reform. We do this by examining thickness relationships, where soil thickness st and biomantle thickness bt are functions of upbuilding u and deepening d minus removal r processes, hence st/bt= f( u+ d- r). Upbuilding has two subsets, u1, which includes all exogenous (allochthonous—outside) mineral and/or organic inputs to the soil system, and u2, which includes all endogenous (autochthonous—in situ) processes and productions, including weathering. Exogenous u1 inputs include eolian and slopewash inputs (sedimentations) of mineral and organic materials, mass wasting accumulations and the like. Endogenous u2 processes and productions include the sum of in situ bioturbations, biosynthetic productions, organic accumulations, biovoid productions, weathering and volume increases caused by their sum. Endogenous upbuildings, which dominantly occur in the biomantle, are basically biodynamic bd processes and productions, hence u2=bd. Therefore, if exogenous upbuildings u1 are minimal or zero, then biomantle thickness bt is expressed by bt= f( u2- r) or bt= f(bd- r). Drawing on these relationships, we employ a graphic-conceptual device called process vector analysis in a digital animation (see supplementary materials or cf. https://netfiles.uiuc.edu/jdomier/www/temp/biomantle.html) that illustrates the main pathways that form both Earth's soil and its unique epidermis, the biomantle. We then discuss the main elements of the animation using

  3. Animating the biodynamics of soil thickness using process vector analysis: A dynamic denudation approach to soil formation

    USGS Publications Warehouse

    Johnson, D.L.; Domier, J.E.J.; Johnson, D.N.

    2005-01-01

    This paper expands the dynamic denudation framework of landscape evolution by providing new process insights and details on how soil and its signature morphological feature, the biomantle, form and function in the environment. We examine soils and their biomantles from disparate parts of the world, from the tropics through midlatitudes and hyperarid through perhumid, a range that exhibits varying environments for, and of, life. We then explicate the process pathways that cause soils to thicken and thin, and to even disappear, then reform. We do this by examining thickness relationships, where soil thickness stand biomantle thickness bt are functions of upbuilding u and deepening d minus removal r processes, hence st/bt=f(u+d-r). Upbuilding has two subsets, u1, which includes all exogenous (allochthonous-outside) mineral and/or organic inputs to the soil system, and u2, which includes all endogenous (autochthonous-in situ) processes and productions, including weathering. Exogenous u1 inputs include eolian and slopewash inputs (sedimentations) of mineral and organic materials, mass wasting accumulations and the like. Endogenous u2 processes and productions include the sum of in situ bioturbations, biosynthetic productions, organic accumulations, biovoid productions, weathering and volume increases caused by their sum. Endogenous upbuildings, which dominantly occur in the biomantle, are basically biodynamic bd processes and productions, hence u2=bd. Therefore, if exogenous upbuildings u1 are minimal or zero, then biomantle thickness bt is expressed by bt=f(u2-r) or bt=f(bd-r). Drawing on these relationships, we employ a graphic-conceptual device called process vector analysis in a digital animation (see supplementary materials or cf. https://netfiles.uiuc.edu/jdomier/www/temp/ biomantle.html) that illustrates the main pathways that form both Earth's soil and its unique epidermis, the biomantle. We then discuss the main elements of the animation using still frames that

  4. Calcium Sulfate in Atacama Desert Basalt: A Possible Analog for Bright Material in Adirondack Basalt, Gusev Crater

    NASA Technical Reports Server (NTRS)

    Sutter, B.; Golden, D. C.; Amundson, R.; Chong-Diaz, G.; Ming, D. W.

    2007-01-01

    The Atacama Desert in northern Chile is one of the driest deserts on Earth (< 2mm/y). The hyper-arid conditions allow extraordinary accumulations of sulfates, chlorides, and nitrates in Atacama soils. Examining salt accumulations in the Atacama may assist understanding salt accumulations on Mars. Recent work examining sulfate soils on basalt parent material observed white material in the interior vesicles of surface basalt. This is strikingly similar to the bright-white material present in veins and vesicles of the Adirondack basalt rocks at Gusev Crater which are presumed to consist of S, Cl, and/or Br. The abundance of soil gypsum/anhydrite in the area of the Atacama basalt suggested that the white material consisted of calcium sulfate (Ca-SO4) which was later confirmed by SEM/EDS analysis. This work examines the Ca-SO4 of Atacama basalt in an effort to provide insight into the possible nature of the bright material in the Adirondack basalt of Gusev Crater. The objectives of this work are to (i) discuss variations in Ca-SO4 crystal morphology in the vesicles and (ii) examine the Ca-SO4 interaction(s) with the basalt interior.

  5. Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis

    DOE PAGES

    Jian, Siyang; Li, Jianwei; Chen, Ji; ...

    2016-07-08

    Nitrogen (N) fertilization affects the rate of soil organic carbon (SOC) decomposition by regulating extracellular enzyme activities (EEA). Extracellular enzymes have not been represented in global biogeochemical models. Understanding the relationships among EEA and SOC, soil N (TN), and soil microbial biomass carbon (MBC) under N fertilization would enable modeling of the influence of EEA on SOC decomposition. Based on 65 published studies, we synthesized the activities of α-1,4-glucosidase (AG), β-1,4-glucosidase (BG), β-d-cellobiosidase (CBH), β-1,4-xylosidase (BX), β-1,4-N-acetyl-glucosaminidase (NAG), leucine amino peptidase (LAP), urease (UREA), acid phosphatase (AP), phenol oxidase (PHO), and peroxidase (PEO) in response to N fertilization. Here, themore » proxy variables for hydrolytic C acquisition enzymes (C-acq), N acquisition (N-acq), and oxidative decomposition (OX) were calculated as the sum of AG, BG, CBH and BX; AG and LAP; PHO and PEO, respectively.« less

  6. Sensitivity Analysis of the USLE Soil Erodibility Factor to Its Determining Parameters

    NASA Astrophysics Data System (ADS)

    Mitova, Milena; Rousseva, Svetla

    2014-05-01

    Soil erosion is recognized as one of the most serious soil threats worldwide. Soil erosion prediction is the first step in soil conservation planning. The Universal Soil Loss Equation (USLE) is one of the most widely used models for soil erosion predictions. One of the five USLE predictors is the soil erodibility factor (K-factor), which evaluates the impact of soil characteristics on soil erosion rates. Soil erodibility nomograph defines K-factor depending on soil characteristics, such as: particle size distribution (fractions finer that 0.002 mm and from 0.1 to 0.002 mm), organic matter content, soil structure and soil profile water permeability. Identifying the soil characteristics, which mostly influence the K-factor would give an opportunity to control the soil loss through erosion by controlling the parameters, which reduce the K-factor value. The aim of the report is to present the results of analysis of the relative weight of these soil characteristics in the K-factor values. The relative impact of the soil characteristics on K-factor was studied through a series of statistical analyses of data from the geographic database for soil erosion risk assessments in Bulgaria. Degree of correlation between K-factor values and the parameters that determine it was studied by correlation analysis. The sensitivity of the K-factor was determined by studying the variance of each parameter within the range between minimum and maximum possible values considering average value of the other factors. Normalizing transformation of data sets was applied because of the different dimensions and the orders of variation of the values of the various parameters. The results show that the content of particles finer than 0.002 mm has the most significant relative impact on the soil erodibility, followed by the content of particles with size from 0.1 mm to 0.002 mm, the class of the water permeability of the soil profile, the content of organic matter and the aggregation class. The

  7. Soil heavy metal contamination in an industrial area: analysis of the data collected during a decade.

    PubMed

    D'Emilio, Mariagrazia; Caggiano, Rosa; Macchiato, Maria; Ragosta, Maria; Sabia, Serena

    2013-07-01

    Soil contamination by heavy metals has become a serious problem mainly because, above certain concentrations, all metals have adverse effects on human health. In particular, the accumulation of heavy metals in agricultural soils leads to elevated uptake by crops and affects food quality and safety. In this paper, we present the results of a study carried out over a decade for evaluating the impact of a new industrial settlement in an area geared to agriculture and livestock and far from urban sites. We focus our study on the bioavailable fraction of Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn in soil samples. Heavy metal concentrations in soil are analysed with both univariate and multivariate statistical procedures. The main goal of this paper is the development of a statistical procedure, based on a mix of multivariate analysis, able to compare field surveys carried out during different years and to characterize spatial and temporal changes in soil heavy metals concentrations.

  8. Computational analysis of human N-acetylgalactosamine-6-sulfate sulfatase enzyme: an update in genotype-phenotype correlation for Morquio A.

    PubMed

    Olarte-Avellaneda, Sergio; Rodríguez-López, Alexander; Alméciga-Díaz, Carlos Javier; Barrera, Luis Alejandro

    2014-11-01

    Mucopolysaccharidosis IV A (MPS IV A) is a lysosomal storage disease produced by the deficiency of N-acetylgalactosamine-6-sulfate sulfatase (GALNS) enzyme. Although genotype-phenotype correlations have been reported, these approaches have not enabled to establish a complete genotype-phenotype correlation, and they have not considered a ligand-enzyme interaction. In this study, we expanded the in silico evaluation of GALNS mutations by using several bioinformatics tools. Tertiary GALNS structure was modeled and used for molecular docking against galactose-6-sulfate, N-acetylgalactosamine-6-sulfate, keratan sulfate, chondroitin-6-sulfate, and the artificial substrate 4-methylumbelliferyl-β-D-galactopyranoside-6-sulfate. Furthermore, we considered the evolutionary residue conservation, change conservativeness, position within GALNS structure, and the impact of amino acid substitution on the structure and function of GALNS. Molecular docking showed that amino acids involved in ligand interaction correlated with those observed in other human sulfatases, and mutations within the active cavity reduced affinity of all evaluated ligands. Combination of several bioinformatics approaches allowed to explaine 90% of the missense mutations affecting GALNS, and the prediction of the phenotype for another 21 missense mutations. In summary, we have shown for the first time a docking evaluation of natural and artificial ligands for human GALNS, and proposed an update in genotype-phenotype correlation for Morquio A, based on the use of multiple parameters to predict the disease severity.

  9. Analysis of bioremediation of pesticides by soil microorganisms

    NASA Astrophysics Data System (ADS)

    Ruml, Tomas; Klotz, Dietmar; Tykva, Richard

    1995-10-01

    The application of new pesticides requires careful monitoring of their distribution in the environment. The effect of the soil microflora on the stability of the [14C]- labelled juvenoid hormone analogue W-328 was estimated. The micro-organisms from two different soil samples were isolated and tested for their ability to decompose W-328. One bacterial strain, yeast and mold isolates, exhibited the degradation activity. The growth characteristics such as pH and temperature optima were determined. The degradation products were estimated using HPLC.

  10. Acid Sulfate Alteration in Gusev Crater, Mars

    NASA Technical Reports Server (NTRS)

    Morris, R. V.; Ming, D. W.; Catalano, J. G.

    2016-01-01

    The Mars Exploration Rover (MER) Spirit landed on the Gusev Crater plains west of the Columbia Hills in January, 2004, during the Martian summer (sol 0; sol = 1 Martian day = 24 hr 40 min). Spirit explored the Columbia Hills of Gusev Crater in the vicinity of Home Plate at the onset on its second winter (sol approximately 900) until the onset of its fourth winter (sol approximately 2170). At that time, Spirit became mired in a deposit of fined-grained and sulfate-rich soil with dust-covered solar panels and unfavorable pointing of the solar arrays toward the sun. Spirit has not communicated with the Earth since sol 2210 (January, 2011). Like its twin rover Opportunity, which landed on the opposite side of Mars at Meridiani Planum, Spirit has an Alpha Particle X-Ray Spectrometer (APXS) instrument for chemical analyses and a Moessbauer spectrometer (MB) for measurement of iron redox state, mineralogical speciation, and quantitative distribution among oxidation (Fe(3+)/sigma Fe) and coordination (octahedral versus tetrahedral) states and mineralogical speciation (e.g., olivine, pyroxene, ilmenite, carbonate, and sulfate). The concentration of SO3 in Gusev rocks and soils varies from approximately 1 to approximately 34 wt%. Because the APXS instrument does not detect low atomic number elements (e.g., H and C), major-element oxide concentrations are normalized to sum to 100 wt%, i.e., contributions of H2O, CO2, NO2, etc. to the bulk composition care not considered. The majority of Gusev samples have approximately 6 plus or minus 5 wt% SO3, but there is a group of samples with high SO3 concentrations (approximately 30 wt%) and high total iron concentrations (approximately 20 wt%). There is also a group with low total Fe and SO3 concentrations that is also characterized by high SiO2 concentrations (greater than 70 wt%). The trend labeled "Basaltic Soil" is interpreted as mixtures in variable proportions between unaltered igneous material and oxidized and SO3-rich basaltic

  11. Soil salination indicators

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Salts are naturally present in soils, and many salt elements are essential nutrients for plants. The most common soluble salts in soil include major cations of sodium (Na+), magnesium (Mg2+), calcium (Ca2+), potassium (K+), and anions of chloride (Cl-), sulfate (SO42-), bicarbonate (HCO3-) and carbo...

  12. Soil Phosphorus Gains and Losses with Afforestation: A Meta-analysis

    NASA Astrophysics Data System (ADS)

    McMahon, D.; Deng, Q.; Xiang, Y.; Yu, C. L.; Hui, D.; Jackson, R. B.

    2015-12-01

    Afforestation, the planting of trees on previously non-forested land, is commonly practiced around the world to provide wood, reduce erosion, and restore degraded agricultural land. Although afforestation has the potential to meet these objectives while increasing carbon uptake, its net impact on the soil depends on environmental conditions and land-use history. Availability of vital plant nutrients, such as phosphorus (P), may be altered by afforestation, but prior work has largely focused on soil carbon, and changes in soil P had not been quantitatively reviewed. We conducted a literature meta-analysis of changes in total and plant-available soil P with afforestation, compiling 49 studies representing 186 independent forest stands on five continents. Over the full dataset, mean concentration of plant-available phosphorus (mg kg-1 soil) increased by 22.7% with afforestation (bootstrapped 95% confidence interval = [15.1%, 30.7%]), while mean concentration of total phosphorus decreased by 13.5% (95% CI = [-18.4%, -8.6%]). These data reflect trends in upper mineral soil horizons, with sampling depths clustered around 20 cm and few studies reporting data below 50 cm. Differences in prior land use partially explain the substantial variation in effect size, with larger increases in available P and smaller decreases in total P when trees were planted on degraded soils. Trends in both available and total P were also enhanced with increasing time since afforestation, suggesting that changes in soil P concentrations are driven by cumulative processes rather than site preparation and planting. Our meta-analysis suggests that 1. afforestation can transform phosphorus into more plant-accessible forms, while potentially depleting total soil stocks of P, and 2. land-use history, more than climate or species planted, determines the effects of afforestation on soils' ability to meet the nutrient needs of vegetation.

  13. Improving long-term global precipitation dataset using multi-sensor surface soil moisture retrievals and the soil moisture analysis rainfall tool (SMART)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Using multiple historical satellite surface soil moisture products, the Kalman Filtering-based Soil Moisture Analysis Rainfall Tool (SMART) is applied to improve the accuracy of a multi-decadal global daily rainfall product that has been bias-corrected to match the monthly totals of available rain g...

  14. Improving long-term, retrospective precipitation datasets using satellite-based surface soil moisture retrievals and the soil moisture analysis rainfall tool (SMART)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Using historical satellite surface soil moisture products, the Soil Moisture Analysis Rainfall Tool (SMART) is applied to improve the accuracy of a multi-decadal global daily rainfall product that has been bias-corrected to match the monthly totals of available ground observations. In order to adapt...

  15. Dynamics of methane production, sulfate reduction, and denitrification in a permanently waterlogged alder swamp

    SciTech Connect

    Westermann, P.; Ahring, B.K.

    1987-10-01

    The dynamics of sulfate reduction, methane production, and denitrification were investigated in a permanently waterlogged alder swamp. Molybdate, an inhibitor of sulfate reduction, stimulated methane production in soil slurries, thus suggesting competition for common substrates between sulfate-reducing and methane-producing bacteria. Acetate, hydrogen, and methanol were found to stimulate both sulfate reduction and methane production, while trimethylamine mainly stimulated methane production. Nitrate addition reduced both methane production and sulfate reduction, either as a consequence of competition of poisoning of the bacteria. Sulfate-reducing bacteria were only slightly limited by the availability of electron acceptors, while denitrifying bacteria were seriously limited by low nitrate concentrations. Arrhenius plots of the three processes revealed different responses to temperature changes in the slurries. Methane production was most sensitive to temperature changes, followed by denitrification and sulfate reduction. No significant differences between slope patterns were observed when comparing summer and winter measurements, indicating similar populations regarding temperature responses.

  16. Analysis of observed soil moisture patterns under different land covers in Western Ghats, India

    NASA Astrophysics Data System (ADS)

    Venkatesh, B.; Lakshman, Nandagiri; Purandara, B. K.; Reddy, V. B.

    2011-02-01

    SummaryAn understanding of the soil moisture variability is necessary to characterize the linkages between a region's hydrology, ecology and physiography. In the changing land use scenario of Western Ghats, India, where deforestation along with extensive afforestation with exotic species is being undertaken, there is an urgent need to evaluate the impacts of these changes on regional hydrology. The objectives of the present study were: (a) to understand spatio-temporal variability of soil water potential and soil moisture content under different land covers in the humid tropical Western Ghats region and (b) to evaluate differences if any in spatial and temporal patterns of soil moisture content as influenced by nature of land cover. To this end, experimental watersheds located in the Western Ghats of Uttara Kannada District, Karnataka State, India, were established for monitoring of soil moisture. These watersheds possessed homogenous land covers of acacia plantation, natural forest and degraded forest. In addition to the measurements of hydro-meteorological parameters, soil matric potential measurements were made at four locations in each watershed at 50 cm, 100 cm and 150 cm depths at weekly time intervals during the period October 2004-December 2008. Soil moisture contents derived from potential measurements collected were analyzed to characterize the spatial and temporal variations across the three land covers. The results of ANOVA ( p < 0.01, LSD) test indicated that there was no significant change in the mean soil moisture across land covers. However, significant differences in soil moisture with depth were observed under forested watershed, whereas no such changes with depth were noticed under acacia and degraded land covers. Also, relationships between soil moisture at different depths were evaluated using correlation analysis and multiple linear regression models for prediction of soil moisture from climatic variables and antecedent moisture condition were

  17. Reducing the dimensionality of soil microinvertebrate community datasets using Indicator Species Analysis: Implications for ecosystem monitoring and soil management

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Soil microinvertebrates are closely associated with soil decomposition and nutrient cycles and may be particularly responsive indicators for soil management practices. However, identification of appropriate bioindicator species for many systems has been severely limited by a lack of information on ...

  18. Soil Studies: Applying Acid-Base Chemistry to Environmental Analysis.

    ERIC Educational Resources Information Center

    West, Donna M.; Sterling, Donna R.

    2001-01-01

    Laboratory activities for chemistry students focus attention on the use of acid-base chemistry to examine environmental conditions. After using standard laboratory procedures to analyze soil and rainwater samples, students use web-based resources to interpret their findings. Uses CBL probes and graphing calculators to gather and analyze data and…

  19. [Bacteria community in different aged Coptis chinensis planting soil revealed by PCR-DGGE analysis].

    PubMed

    Tan, Yuan; Chen, Qiang; Liu, Han-jun; Song, San-duo; Yu, Xiu-mei; Dong, Zhen-huan; Tang, Xue; Zhong, Yu-zhou

    2015-08-01

    In order to reveal the cause of disease occurred in the process of Coptis chinensis growth, this paper studied the bacterial species diversity index of different aged rhizospheric and non-rhizospheric soil planting normal or sick C. chinensis by using PCR-DGGE technique. The representative DGGE bands were chosen to be cloned, and sequenced, the phylogeny were constructed. The results showed that the bacterial communities were very different between the normal and diseased soil samples of C. chinensis, and the diversity index (H) of diseased soil samples were higher than that of normal soil samples. Sequencing analysis of representative cloned DGGE bands showed that the unculturable bacteria were the dominant groups, and bacteria belonged to genus Bacillus, Acidovorax, Acinetobacter, uncultured Kluyvera, and uncultured Comamonas were also existing, but the reported plant pathogenic bacteria were not found in the C. chinensis planting soil. The density and brightness of clone band d in diseased soil samples was higher than that in normal soil sample, and sequencing analysis showed that it belonged to genus Acidovorax. Obviously, during the process of C. chinensis growth, the rhizospheric bacteria population changed, and the quantity of bacteria belong Acidovorax increased, which probably resulted in the disease occurred during C. chinensis growth.

  20. Assessing heavy metal sources in sugarcane Brazilian soils: an approach using multivariate analysis.

    PubMed

    da Silva, Fernando Bruno Vieira; do Nascimento, Clístenes Williams Araújo; Araújo, Paula Renata Muniz; da Silva, Luiz Henrique Vieira; da Silva, Roberto Felipe

    2016-08-01

    Brazil is the world's largest sugarcane producer and soils in the northeastern part of the country have been cultivated with the crop for over 450 years. However, so far, there has been no study on the status of heavy metal accumulation in these long-history cultivated soils. To fill the gap, we collect soil samples from 60 sugarcane fields in order to determine the contents of Cd, Cr, Cu, Ni, Pb, and Zn. We used multivariate analysis to distinguish between natural and anthropogenic sources of these metals in soils. Analytical determinations were performed in ICP-OES after microwave acid solution digestion. Mean concentrations of Cd, Cr, Cu, Ni, Pb, and Zn were 1.9, 18.8, 6.4, 4.9, 11.2, and 16.2 mg kg(-1), respectively. The principal component one was associated with lithogenic origin and comprised the metals Cr, Cu, Ni, and Zn. Cluster analysis confirmed that 68 % of the evaluated sites have soil heavy metal concentrations close to the natural background. The Cd concentration (principal component two) was clearly associated with anthropogenic sources with P fertilization being the most likely source of Cd to soils. On the other hand, the third component (Pb concentration) indicates a mixed origin for this metal (natural and anthropogenic); hence, Pb concentrations are probably related not only to the soil parent material but also to industrial emissions and urbanization in the vicinity of the agricultural areas.

  1. Preparation of spiked soils by vapor fortification for volatile organic compounds analysis

    SciTech Connect

    Hewitt, A.D.

    1994-05-01

    This paper describes a vapor fortification method for preparing quality assurance/quality control soils for volatile organic compound analysis. Treatment of soils with volatile organic compounds occurs in a closed container in a manner somewhat analogous to the way the vadose zone often becomes contaminated. One advantage of this method for preparing soils for quality assurance/quality control purposes is that the efficiency of various extraction methods can be reliably compared. Furthermore, by substantially reducing the error due to sample inhomogeneity, the error associated with the determinative step can also be properly evaluated. 15 refs., 3 tabs.

  2. Mapping soils, crops, and rangelands by machine analysis of multitemporal ERTS-1 data. [Kansas and Texas

    NASA Technical Reports Server (NTRS)

    Baumgardner, M. F.; Henderson, J. A., Jr.

    1974-01-01

    ERTS-1 data, obtained during the period 25 August 1972 to 5 September 1973 over a range of test sites in the Central United States, have been used for identifying and mapping differences in soil patterns, species and conditions of cultivated crops, and conditions of rangelands. Multispectral scanner data from multiple ERTS passes over certain test sites have provided the opportunity to study temporal changes in the scene. Multispectral classifications delineating soils boundaries in different test sites compared well with existing soil association maps prepared by conventional means. Spectral analysis of ERTS data was used to identify, maps, and make areal measurements of wheat in western Kansas. Multispectral analysis of ERTS-1 data provided patterns in rangelands which can be related to soils differences, range management practices, and the extent of infestation of grasslands by mesquite (prosopis fuliflora) and juniper (juniperus spp.).

  3. Classification of Kelantan watershed using mapwindow GIS integrated with soil and water analysis tool (MWSWAT)

    NASA Astrophysics Data System (ADS)

    Zaman, A.; Mustapha, M. A.

    2016-11-01

    Watershed delineation is one of the techniques used to identify and analyze spatial characteristics and distribution of an area. Spatial and physical characteristics of each sub basin for example the area of watershed and identification of soil type can contribute to the determination of areas that are vulnerable to flood. Determination of these physical characteristics can be implemented by using Hydrologic Response Unit (HRU) analysis with combination of land-use data, soil and Digital Elevation Model (DEM). The objectives of this study are to delineate Kelantan watershed, and to divide the watershed into sub basins using open source Mapwindow GIS integrated with Soil And Water Analysis Tool (MWSWAT). Data such as DEM, land use and soil data were analyzed. The study identified a total watershed area of 9755.55 km2 (65 percent of Kelantan area), which were divided into 18 sub basins. Applicability of the approach in classifying Kelantan watershed depends on the data and technique.

  4. Soil analysis and underground storage tank assessment (evaluation of soil contamination)

    SciTech Connect

    Kitchen, G.H.

    1995-12-31

    This paper gives the theoretical foundation, applicable background information, and practical guidance to the detection of exterior and interior corrosion of underground steel fuel storage tanks. The corrosion of underground fuel tanks is affected by many variables such as: conductivity, chemical compositions, compaction and pH of the soil; yearly precipitation; deterioration of the coating by physical, lightning, and biological activity; stray currents; galvanic coupling with other buried metallic structures. Corrosion may lead to leakage of the fluids contained in the underground fuel storage tank and/or its associated piping.

  5. Phylogeography of Sulfate-Reducing Bacteria among Disturbed Sediments, Disclosed by Analysis of the Dissimilatory Sulfite Reductase Genes (dsrAB)

    PubMed Central

    Pérez-Jiménez, J. R.; Kerkhof, L. J.

    2005-01-01

    Sediment samples were collected worldwide from 16 locations on four continents (in New York, California, New Jersey, Virginia, Puerto Rico, Venezuela, Italy, Latvia, and South Korea) to assess the extent of the diversity and the distribution patterns of sulfate-reducing bacteria (SRB) in contaminated sediments. The SRB communities were examined by terminal restriction fragment (TRF) length polymorphism (TRFLP) analysis of the dissimilatory sulfite reductase genes (dsrAB) with NdeII digests. The fingerprints of dsrAB genes contained a total of 369 fluorescent TRFs, of which <20% were present in the GenBank database. The global sulfidogenic communities appeared to be significantly different among the anthropogenically impacted (petroleum-contaminated) sites, but nearly all were less diverse than pristine habitats, such as mangroves. A global SRB indicator species of petroleum pollution was not identified. However, several dsrAB gene sequences corresponding to hydrocarbon-degrading isolates or consortium members were detected in geographically widely separated polluted sites. Finally, a cluster analysis of the TRFLP fingerprints indicated that many SRB microbial communities were most similar on the basis of close geographic proximity (tens of kilometers). Yet, on larger scales (hundreds to thousands of kilometers) SRB communities could cluster with geographically widely separated sites and not necessarily with the site with the closest proximity. These data demonstrate that SRB populations do not adhere to a biogeographic distribution pattern similar to that of larger eukaryotic organisms, with the greatest species diversity radiating from the Indo-Pacific region. Rather, a patchy SRB distribution is encountered, implying an initially uniform SRB community that has differentiated over time. PMID:15691959

  6. Effects of copper sulfate on seedlings of Prosopis pubescens (screwbean mesquite).

    PubMed

    Zappala, Marian N; Ellzey, Joanne T; Bader, Julia; Peralta-Videa, Jose R; Gardea-Torresdey, Jorge

    2014-01-01

    Phytoextraction is an established method of removal of heavy metals from contaminated soils worldwide. Phytoextraction is most efficient if local plants are used in the contaminated site. We propose that Prosopis pubescens (Screw bean mesquite) would be a successful phytoextractor of copper in our local soils. In order to determine the feasibility of using Screw bean mesquite, we utilized inductively-coupled plasma-optical emission spectroscopy (ICP-OES) and elemental analysis to observe the uptake of copper and the effects on macro and micro nutrients within laboratory-grown seedlings. We have previously shown that P. pubescens is a hyperaccumulator of copper in soil-grown seedlings. Light and transmission electron microscopy demonstrated death of root cells and ultrastructural changes due to the presence of copper from 50 mg/L - 600 mg/L. Ultrastructural changes included plasmolysis, starch accumulation, increased vacuolation and swollen chloroplasts with disarranged thylakoid membranes in cotyledons. Inductively coupled plasma-optical emission spectroscopy analyses of macro- and micro-nutrients revealed that the presence of copper sulfate in the growth medium of Petri-dish grown Prosopis pubescens seedlings resulted in dramatic decreases of magnesium, potassium and phosphorus. At 500-600 mg/L of copper sulfate, a substantial increase of sulfur was present in roots.

  7. Effects of copper sulfate on seedlings of Prosopis pubescens (Screwbean mesquite)

    PubMed Central

    Zappala, Marian N.; Ellzey, Joanne T.; Bader, Julia; Peralta-Videa, Jose R.; Gardea-Torresdey, Jorge

    2013-01-01

    Phytoextraction is an established method of removal of heavy metals from contaminated soils worldwide. Phytoextraction is most efficient if local plants are used in the contaminated site. We propose that Prosopis pubescens (Screw bean mesquite) would be a successful phytoextractor of copper in our local soils. In order to determine the feasibility of using Screw bean mesquite, we utilized inductively coupled plasma-optical emission spectroscopy (ICP-OES) and elemental analysis to observe the uptake of copper and the effects on macro and micro nutrients within laboratory-grown seedlings. We have previously shown that pubescens is a hyperaccumulator of copper in soil-grown seedlings. Light and transmission electron microscopy demonstrated death of root cells and ultrastructural changes due to the presence of copper from 50 mg L-1 – 600 mg L-1. Ultrastructural changes included plasmolysis, starch accumulation, increased vacuolation and swollen chloroplasts with disarranged thylakoid membranes in cotyledons. Inductively coupled plasma-optical emission spectroscopy analyses of macro-and micro-nutrients revealed that the presence of copper sulfate in the growth mediium of Petri-dish grown Prosopis pubescens seedlings resulted in dramatic decreases of magnesium, potassium and phosphorus. At 500-600 mg L-1 of copper sulfate a substantial increase of sulfur was present in roots. PMID:24933900

  8. Application of fluorescent microscopy and cascade filtration methods for analysis of soil microbial community

    NASA Astrophysics Data System (ADS)

    Ivanov, Konstantin; Pinchuk, Irina; Gorodnichev, Roman; Polyanskaya, Lubov

    2016-04-01

    Methods establishment of soil microbial cells size estimation called from the importance of current needs of research in microbial ecology. Some of the methods need to be improved for more detailed view of changes happen in microbiome of terrestrial ecosystems. The combination of traditional microscopy methods, fluorescence and filtration in addition to cutting-edge DNA analysis gives a wide range of the approaches for soil microbial ecologists in their research questions. In the most of the cases the bacterial cells size is limited of the natural conditions such as lack of nutrients or stress factors due to heterogeneity of soil system. In the samples of soils, lakes and rivers sediments, snow and rain water the bacterial cells were detected minimally of 0.2 microns. We established the combination of the cascade filtration and fluorescent microscopy for complex analysis of different terrestrial ecosystems and various soil types. Our modification based on the use of successively filtered soil suspension for collection of microbes by the membrane pores decrease. Combination with fluorescence microscopy and DNA analysis via FISH method gave the presentation of microbial interactions and review of ecological strategies of soil microorganisms. Humus horizons of primitive arctic soil were the most favorable for bacterial growth. Quantified biomass of soil bacteria depends on the dominance of cells with specific dimensions caused of stress factors. The average bacterial size of different soil varied from 0.23 to 0.38 microns, however in humus horizons of arctic soil we detected the contrast dominance of the bigger bacterial cells sized of 1.85 microns. Fungi in this case contributed to increase the availability of organic matter for bacteria because the fungal mycelium forms the appreciable part of microbial biomass of primitive arctic soil. The dominant content of bigger bacterial cells in forest and fallow soil as well as the opposite situation in arable soils caused

  9. Characterization of field compaction using shrinkage analysis and visual soil examination

    NASA Astrophysics Data System (ADS)

    Johannes, Alice; Keller, Thomas; Weisskopf, Peter; Schulin, Rainer; Boivin, Pascal

    2016-04-01

    Visual field examination of soil structure can be very useful in extension work, because it is easy to perform, does not require equipment or lab analyses and the result is immediately available. The main limitations of visual methods are subjectivity and variation with field conditions. To provide reliable reference information, methods for objective and quantitative assessment of soil structure quality are still necessary. Soil shrinkage analysis (ShA) (Braudeau et al., 2004) provides relevant parameters for soil functions that allow precise and accurate assessment of soil compaction. To test it, we applied ShA to samples taken from a soil structure observatory (SSO) set up in 2014 on a loamy soil in Zurich, Switzerland to quantify the structural recovery of compacted agricultural soil. The objective in this presentation is to compare the ability of a visual examination method and ShA to assess soil compaction and structural recovery on the SSO field plots. Eighteen undisturbed soil samples were taken in the topsoil (5-10 cm) and 9 samples in the subsoil (30-35 cm) of compacted plots and control. Each sample went through ShA, followed by a visual examination of the sample and analysis of soil organic carbon and texture. ShA combines simultaneous shrinkage with water retention measurements and, in addition to soil properties such as bulk density, coarse and fine porosity, also provides information on hydrostructural stability and plasma and structural porosity. For visual examination the VESS method of Ball et al. (2007) was adapted to core samples previously equilibrated at -100 hPa matric potential. The samples were randomly and anonymously scored to avoid subjectivity and were equilibrated to insure comparable conditions. Compaction decreased the total specific volume, as well as air and water content at all matric potentials. Structural porosity was reduced, while plasma porosity remained unchanged. Compaction also changed the shape of the shrinkage curve: (i

  10. A Meta-Analysis quantifying the relationships between response to nitrogen fertilization vs soil texture and weather

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Weather and soil properties are known to affect soil nitrogen (N) availability and plant N uptake. Studies examining N response as affected by soil and weather sometimes give conflicting results. Meta-analysis is a statistical method for estimating treatment effects in a series of experiments...

  11. MICROBIAL DEGRADATION OF TOLUENE UNDER SULFATE- REDUCING CONDITIONS AND THE INFLUENCE OF IRON ON THE PROCESS

    EPA Science Inventory

    Toluene degradation occurred concomitantly with sulfate reduction in anaerobic microcosms inoculated with contaminated subsurface soil from an aviation fuel storage facility near the Patuxent River (Md.). Similar results were obtained for enrichment cultures in which toluene was ...

  12. Grey Incidence Analysis (gia): a New Local Method for Modelling Chinese Soil Vis-Nir Spectral Library to Predict Soil Total Nitrogen Content

    NASA Astrophysics Data System (ADS)

    Wang, Qianlong

    2014-06-01

    This paper introduces a new approach called grey incidence analysis(GIA), by which high accuracy prediction model can be established combined with partial least squares regression(PLSR) to deal with Chinese soil vis-NIR spectral library and estimate soil total nitrogen content in local area. Using spectral matching algorithm such as Mahalanobis distance, spectral angle model (SAM) and spectral correlation fitting(SCF), fuzzy k-means clustering method only based on the spectral data without considering soil total nitrogen content in the library. Soil total nitrogen content have grey uncertainty relationship with each vis-NIR spectral band(400-2500nm). This method combine the soil total nitrogen value with spectrum data when performing spectral matching. In this study, 1661 soil samples in the library were collected from 13 provinces in China, which include Tibet, Xinjiang, Heilongjiang, and Hainan. The samples represent 17 soil groups of the Chinese Soil (Genetic) Classification System. After air-drying and sieving, the diffuse reflectance spectra of the samples were measured under laboratory conditions in the range between 400 and 2500 nm using a portable vis-NIR spectrometer. Hyperspectral inversion model was built based on 104 paddy soil samples in Zhejiang province to predict the soil total nitrogen content. The results show that the GIA-PLSR method presents great potential for predicting soil total nitrogen content in large soil vis-NIR library. The prediction accuracy: R2 = 0.897, RMSEP = 0.028, RPDP = 3.151. This study also show that soil vis-NIR spectroscopy combined with TN value can be used to further improve the prediction performance of spectral models.

  13. Dynamics of soil water evaporation during soil drying: laboratory experiment and numerical analysis.

    PubMed

    Han, Jiangbo; Zhou, Zhifang

    2013-01-01

    Laboratory and numerical experiments were conducted to investigate the evolution of soil water evaporation during a continuous drying event. Simulated soil water contents and temperatures by the calibrated model well reproduced measured values at different depths. Results show that the evaporative drying process could be divided into three stages, beginning with a relatively high evaporation rate during stage 1, followed by a lower rate during transient stage and stage 2, and finally maintaining a very low and constant rate during stage 3. The condensation zone was located immediately below the evaporation zone in the profile. Both peaks of evaporation and condensation rate increased rapidly during stage 1 and transition stage, decreased during stage 2, and maintained constant during stage 3. The width of evaporation zone kept a continuous increase during stages 1 and 2 and maintained a nearly constant value of 0.68 cm during stage 3. When the evaporation zone totally moved into the subsurface, a dry surface layer (DSL) formed above the evaporation zone at the end of stage 2. The width of DSL also presented a continuous increase during stage 2 and kept a constant value of 0.71 cm during stage 3.

  14. On the evaporation of ammonium sulfate solution

    SciTech Connect

    Drisdell, Walter S.; Saykally, Richard J.; Cohen, Ronald C.

    2009-07-16

    Aqueous evaporation and condensation kinetics are poorly understood, and uncertainties in their rates affect predictions of cloud behavior and therefore climate. We measured the cooling rate of 3 M ammonium sulfate droplets undergoing free evaporation via Raman thermometry. Analysis of the measurements yields a value of 0.58 {+-} 0.05 for the evaporation coefficient, identical to that previously determined for pure water. These results imply that subsaturated aqueous ammonium sulfate, which is the most abundant inorganic component of atmospheric aerosol, does not affect the vapor-liquid exchange mechanism for cloud droplets, despite reducing the saturation vapor pressure of water significantly.

  15. Field analysis of mercury in water, sediment and soil using static headspace analysis

    SciTech Connect

    Kriger, A.A.; Turner, R.R.

    1994-12-31

    We developed a field screening method for rapid analysis of Hg in water, soil, and sediment, which can be applied cost-effectively at Hg-contaminated sites. Samples are chemically pretreated in ordinary containers, followed by analysis of the sample headspace Hg vapor using a portable commercial analyzer. Hg in water samples is reduced directly by the addition of stannous chloride, while solids are first digested with aqua regia or piranha solution to liberate the Hg from the solids. Aided by vigorous agitation after adding the reductant, the elemental Hg partitions between solution and headspace according to Henry`s Law. The method requires about 2 and 15 minutes to complete for water and solids, respectively. The method provides very useful detection limits for water (0.1 {mu}g/L) and solids (2-3{mu}g/g). Intercomparisons with laboratory-analyzed environmental samples show good agreement.

  16. NEW SOIL VOC SAMPLERS: EN CORE AND ACCU CORE SAMPLING/STORAGE DEVICES FOR VOC ANALYSIS

    SciTech Connect

    Susan S. Sorini; John F. Schabron; Joseph F. Rovani Jr

    2006-06-01

    Soil sampling and storage practices for volatile organic analysis must be designed to minimize loss of volatile organic compounds (VOCs) from samples. The En Core{reg_sign} sampler is designed to collect and store soil samples in a manner that minimizes loss of contaminants due to volatilization and/or biodegradation. An ASTM International (ASTM) standard practice, D 6418, Standard Practice for Using the Disposable En Core Sampler for Sampling and Storing Soil for Volatile Organic Analysis, describes use of the En Core sampler to collect and store a soil sample of approximately 5 grams or 25 grams for volatile organic analysis and specifies sample storage in the En Core sampler at 4 {+-} 2 C for up to 48 hours; -7 to -21 C for up to 14 days; or 4 {+-} 2 C for up to 48 hours followed by storage at -7 to -21 C for up to five days. This report discusses activities performed during the past year to promote and continue acceptance of the En Core samplers based on their performance to store soil samples for VOC analysis. The En Core sampler is designed to collect soil samples for VOC analysis at the soil surface. To date, a sampling tool for collecting and storing subsurface soil samples for VOC analysis is not available. Development of a subsurface VOC sampling/storage device was initiated in 1999. This device, which is called the Accu Core{trademark} sampler, is designed so that a soil sample can be collected below the surface using a dual-tube penetrometer and transported to the laboratory for analysis in the same container. Laboratory testing of the current Accu Core design shows that the device holds low-level concentrations of VOCs in soil samples during 48-hour storage at 4 {+-} 2 C and that the device is ready for field evaluation to generate additional performance data. This report discusses a field validation exercise that was attempted in Pennsylvania in 2004 and activities being performed to plan and conduct a field validation study in 2006. A draft ASTM

  17. Statistical analysis of site factors controlling preferential flow and transport in soils

    NASA Astrophysics Data System (ADS)

    Koestel, John; Moeys, Julien; Jarvis, Nick

    2010-05-01

    Knowledge of the solute transport characteristics of soils at field and catchment scales is important for sustainable management of environmental and agricultural resources. It is known that preferential flow and solute transport through macropores often contribute substantially to the transport of diffuse pollutants to groundwater or surface water via drains. As direct measurement of preferential flow parameters is expensive and time consuming, more easily obtainable soil properties must instead be used as surrogates to predict preferential flow, using so-called pedotransfer functions (PTFs). However, there is evidence that the soil properties used in classical PTFs (soil texture, bulk density, fraction of organic matter) are not sufficient to infer the flow and transport characteristics of near-saturated and saturated soils (e.g. Weynants, M. et al., 2009. Revisiting Vereecken Pedotransfer Functions: Introducing a Closed-Form Hydraulic Model. Vadose Zone Journal 8: 86-95). Rather, the incorporation of additional data such as land use, soil-biota, and soil-type information appears to be necessary (e.g. Jarvis, N. J. et al., 2009. A conceptual model of soil susceptibility to macropore flow. Vadose Zone Journal 8: 902-910). In this study, we make use of a database comprising results of breakthrough curve experiments and corresponding site (parent material, climate, land use, etc.) and soil properties (texture, bulk density, etc.) published in the peer-reviewed literature to identify through statistical analyses (e.g. factorial and cluster analysis) the key soil properties and site attributes that control susceptibility to preferential flow.

  18. Does agricultural crop diversity enhance soil microbial biomass and organic matter dynamics? A meta-analysis.

    PubMed

    McDaniel, M D; Tiemann, L K; Grandy, A S

    2014-04-01

    Our increasing dependence on a small number of agricultural crops, such as corn, is leading to reductions in agricultural biodiversity. Reductions in the number of crops in rotation or the replacement of rotations by monocultures are responsible for this loss of biodiversity. The belowground implications of simplifying agricultural plant communities remain unresolved; however, agroecosystem sustainability will be severely compromised if reductions in biodiversity reduce soil C and N concentrations, alter microbial communities, and degrade soil ecosystem functions as reported in natural communities. We conducted a meta-analysis of 122 studies to examine crop rotation effects on total soil C and N concentrations, and the faster cycling microbial biomass C and N pools that play key roles in soil nutrient cycling and physical processes such as aggregate formation. We specifically examined how rotation crop type and management practices influence C and N dynamics in different climates and soil types. We found that adding one or more crops in rotation to a monoculture increased total soil C by 3.6% and total N by 5.3%, but when rotations included a cover crop (i.e., crops that are not harvested but produced to enrich the soil and capture inorganic N), total C increased by 8.5% and total N 12.8%. Rotations substantially increased the soil microbial biomass C (20.7%) and N (26.1%) pools, and these overwhelming effects on microbial biomass were not moderated by crop type or management practices. Crop rotations, especially those that include cover crops, sustain soil quality and productivity by enhancing soil C, N, and microbial biomass, making them a cornerstone for sustainable agroecosystems.

  19. Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters.

    PubMed

    de Menezes, Alexandre B; Prendergast-Miller, Miranda T; Richardson, Alan E; Toscas, Peter; Farrell, Mark; Macdonald, Lynne M; Baker, Geoff; Wark, Tim; Thrall, Peter H

    2015-08-01

    Network and multivariate statistical analyses were performed to determine interactions between bacterial and fungal community terminal restriction length polymorphisms as well as soil properties in paired woodland and pasture sites. Canonical correspondence analysis (CCA) revealed that shifts in woodland community composition correlated with soil dissolved organic carbon, while changes in pasture community composition correlated with moisture, nitrogen and phosphorus. Weighted correlation network analysis detected two distinct microbial modules per land use. Bacterial and fungal ribotypes did not group separately, rather all modules comprised of both bacterial and fungal ribotypes. Woodland modules had a similar fungal : bacterial ribotype ratio, while in the pasture, one module was fungal dominated. There was no correspondence between pasture and woodland modules in their ribotype composition. The modules had different relationships to soil variables, and these contrasts were not detected without the use of network analysis. This study demonstrated that fungi and bacteria, components of the soil microbial communities usually treated as separate functional groups as in a CCA approach, were co-correlated and formed distinct associations in these adjacent habitats. Understanding these distinct modular associations may shed more light on their niche space in the soil environment, and allow a more realistic description of soil microbial ecology and function.

  20. Multivariate statistical analysis of heavy metal concentration in soils of Yelagiri Hills, Tamilnadu, India - Spectroscopical approach

    NASA Astrophysics Data System (ADS)

    Chandrasekaran, A.; Ravisankar, R.; Harikrishnan, N.; Satapathy, K. K.; Prasad, M. V. R.; Kanagasabapathy, K. V.

    2015-02-01

    Anthropogenic activities increase the accumulation of heavy metals in the soil environment. Soil pollution significantly reduces environmental quality and affects the human health. In the present study soil samples were collected at different locations of Yelagiri Hills, Tamilnadu, India for heavy metal analysis. The samples were analyzed for twelve selected heavy metals (Mg, Al, K, Ca, Ti, Fe, V, Cr, Mn, Co, Ni and Zn) using energy dispersive X-ray fluorescence (EDXRF) spectroscopy. Heavy metals concentration in soil were investigated using enrichment factor (EF), geo-accumulation index (Igeo), contamination factor (CF) and pollution load index (PLI) to determine metal accumulation, distribution and its pollution status. Heavy metal toxicity risk was assessed using soil quality guidelines (SQGs) given by target and intervention values of Dutch soil standards. The concentration of Ni, Co, Zn, Cr, Mn, Fe, Ti, K, Al, Mg were mainly controlled by natural sources. Multivariate statistical methods such as correlation matrix, principal component analysis and cluster analysis were applied for the identification of heavy metal sources (anthropogenic/natural origin). Geo-statistical methods such as kirging identified hot spots of metal contamination in road areas influenced mainly by presence of natural rocks.

  1. Secondary Storage of Dermatan Sulfate in Sanfilippo Disease*

    PubMed Central

    Lamanna, William C.; Lawrence, Roger; Sarrazin, Stéphane; Esko, Jeffrey D.

    2011-01-01

    Mucopolysaccharidoses are a group of genetically inherited disorders that result from the defective activity of lysosomal enzymes involved in glycosaminoglycan catabolism, causing their intralysosomal accumulation. Sanfilippo disease describes a subset of mucopolysaccharidoses resulting from defects in heparan sulfate catabolism. Sanfilippo disorders cause severe neuropathology in affected children. The reason for such extensive central nervous system dysfunction is unresolved, but it may be associated with the secondary accumulation of metabolites such as gangliosides. In this article, we describe the accumulation of dermatan sulfate as a novel secondary metabolite in Sanfilippo. Based on chondroitinase ABC digestion, chondroitin/dermatan sulfate levels in fibroblasts from Sanfilippo patients were elevated 2–5-fold above wild-type dermal fibroblasts. Lysosomal turnover of chondroitin/dermatan sulfate in these cell lines was significantly impaired but could be normalized by reducing heparan sulfate storage using enzyme replacement therapy. Examination of chondroitin/dermatan sulfate catabolic enzymes showed that heparan sulfate and heparin can inhibit iduronate 2-sulfatase. Analysis of the chondroitin/dermatan sulfate fraction by chondroitinase ACII digestion showed dermatan sulfate storage, consistent with inhibition of iduronate 2-sulfatase. The discovery of a novel storage metabolite in Sanfilippo patients may have important implications for diagnosis and understanding disease pathology. PMID:21193389

  2. Secondary storage of dermatan sulfate in Sanfilippo disease.

    PubMed

    Lamanna, William C; Lawrence, Roger; Sarrazin, Stéphane; Esko, Jeffrey D

    2011-03-04

    Mucopolysaccharidoses are a group of genetically inherited disorders that result from the defective activity of lysosomal enzymes involved in glycosaminoglycan catabolism, causing their intralysosomal accumulation. Sanfilippo disease describes a subset of mucopolysaccharidoses resulting from defects in heparan sulfate catabolism. Sanfilippo disorders cause severe neuropathology in affected children. The reason for such extensive central nervous system dysfunction is unresolved, but it may be associated with the secondary accumulation of metabolites such as gangliosides. In this article, we describe the accumulation of dermatan sulfate as a novel secondary metabolite in Sanfilippo. Based on chondroitinase ABC digestion, chondroitin/dermatan sulfate levels in fibroblasts from Sanfilippo patients were elevated 2-5-fold above wild-type dermal fibroblasts. Lysosomal turnover of chondroitin/dermatan sulfate in these cell lines was significantly impaired but could be normalized by reducing heparan sulfate storage using enzyme replacement therapy. Examination of chondroitin/dermatan sulfate catabolic enzymes showed that heparan sulfate and heparin can inhibit iduronate 2-sulfatase. Analysis of the chondroitin/dermatan sulfate fraction by chondroitinase ACII digestion showed dermatan sulfate storage, consistent with inhibition of iduronate 2-sulfatase. The discovery of a novel storage metabolite in Sanfilippo patients may have important implications for diagnosis and understanding disease pathology.

  3. Effects of straw carbon input on carbon dynamics in agricultural soils: a meta-analysis.

    PubMed

    Liu, Chang; Lu, Meng; Cui, Jun; Li, Bo; Fang, Changming

    2014-05-01

    Straw return has been widely recommended as an environmentally friendly practice to manage carbon (C) sequestration in agricultural ecosystems. However, the overall trend and magnitude of changes in soil C in response to straw return remain uncertain. In this meta-analysis, we calculated the response ratios of soil organic C (SOC) concentrations, greenhouse gases (GHGs) emission, nutrient contents and other important soil properties to straw addition in 176 published field studies. Our results indicated that straw return significantly increased SOC concentration by 12.8 ± 0.4% on average, with a 27.4 ± 1.4% to 56.6 ± 1.8% increase in soil active C fraction. CO2 emission increased in both upland (27.8 ± 2.0%) and paddy systems (51.0 ± 2.0%), while CH4 emission increased by 110.7 ± 1.2% only in rice paddies. N2 O emission has declined by 15.2 ± 1.1% in paddy soils but increased by 8.3 ± 2.5% in upland soils. Responses of macro-aggregates and crop yield to straw return showed positively linear with increasing SOC concentration. Straw-C input rate and clay content significantly affected the response of SOC. A significant positive relationship was found between annual SOC sequestered and duration, suggesting that soil C saturation would occur after 12 years under straw return. Overall, straw return was an effective means to improve SOC accumulation, soil quality, and crop yield. Straw return-induced improvement of soil nutrient availability may favor crop growth, which can in turn increase ecosystem C input. Meanwhile, the analysis on net global warming potential (GWP) balance suggested that straw return increased C sink in upland soils but increased C source in paddy soils due to enhanced CH4 emission. Our meta-analysis suggested that future agro-ecosystem models and cropland management should differentiate the effects of straw return on ecosystem C budget in upland and paddy soils.

  4. Bioreactor performance and functional gene analysis of microbial community in a limited-oxygen fed bioreactor for co-reduction of sulfate and nitrate with high organic input.

    PubMed

    Xu, Xi-jun; Chen, Chuan; Wang, Ai-jie; Yu, Hao; Zhou, Xu; Guo, Hong-liang; Yuan, Ye; Lee, Duu-jong; Zhou, Jizhong; Ren, Nan-qi

    2014-08-15

    Limited-oxygen mediated synergistic relationships between sulfate-reducing bacteria (SRB), nitrate-reducing bacteria (NRB) and sulfide-oxidizing bacteria (SOB, including nitrate-reducing, sulfide-oxidizing bacteria NR-SOB) were predicted to simultaneously remove contaminants of nitrate, sulfate and high COD, and eliminate sulfide generation. A lab-scale experiment was conducted to examine the impact of limited oxygen on these oxy-anions degradation, sulfide oxidation and associated microbial functional responses. In all scenarios tested, the reduction of both nitrate and sulfate was almost complete. When limited-oxygen was fed into bioreactors, S(0) formation was significantly improved up to ∼ 70%. GeoChip 4.0, a functional gene microarray, was used to determine the microbial gene diversity and functional potential for nitrate and sulfate reduction, and sulfide oxidation. The diversity of the microbial community in bioreactors was increased with the feeding of limited oxygen. Whereas the intensities of the functional genes involved in sulfate reduction did not show a significant difference, the abundance of the detected denitrification genes decreased in limited oxygen samples. More importantly, sulfide-oxidizing bacteria may alter their populations/genes in response to limited oxygen potentially to function more effectively in sulfide oxidation, especially to elemental sulfur. The genes fccA/fccB from nitrate-reducing, sulfide-oxidizing bacteria (NR-SOB), such as Paracoccus denitrificans, Thiobacillus denitrificans, Beggiatoa sp., Thiomicrospira sp., and Thioalkalivibrio sp., were more abundant under limited-oxygen condition.

  5. A method to extract soil water for stable isotope analysis

    USGS Publications Warehouse

    Revesz, K.; Woods, P.H.

    1990-01-01

    A method has been developed to extract soil water for determination of deuterium (D) and 18O content. The principle of this method is based on the observation that water and toluene form an azeotropic mixture at 84.1??C, but are completely immiscible at ambient temperature. In a specially designed distillation apparatus, the soil water is distilled at 84.1??C with toluene and is separated quantitatively in the collecting funnel at ambient temperature. Traces of toluene are removed and the sample can be analyzed by mass spectrometry. Kerosene may be substituted for toluene. The accuracy of this technique is ?? 2 and ?? 0.2???, respectively, for ??D and ??18O. Reduced accuracy is obtained at low water contents. ?? 1990.

  6. Computational analysis of difenoconazole interaction with soil chitinases

    NASA Astrophysics Data System (ADS)

    Vlǎdoiu, D. L.; Filimon, M. N.; Ostafe, V.; Isvoran, A.

    2015-01-01

    This study focusses on the investigation of the potential binding of the fungicide difenoconazole to soil chitinases using a computational approach. Computational characterization of the substrate binding sites of Serratia marcescens and Bacillus cereus chitinases using Fpocket tool reflects the role of hydrophobic residues for the substrate binding and the high local hydrophobic density of both sites. Molecular docking study reveals that difenoconazole is able to bind to Serratia marcescens and Bacillus cereus chitinases active sites, the binding energies being comparable.

  7. [Use of Remote Sensing for Crop and Soil Analysis

    NASA Technical Reports Server (NTRS)

    Johannsen, Chris J.

    1997-01-01

    The primary agricultural objective of this research is to determine what soil and crop information can be verified from remotely sensed images during the growing season. Specifically: (1) Elements of crop stress due to drought, weeds, disease and nutrient deficiencies will be documented with ground truth over specific agricultural sites and (2) Use of remote sensing with GPS and GIS technology for providing a safe and environmentally friendly application of fertilizers and chemicals will be documented.

  8. Finite-Element Analysis of Multiphase Immiscible Flow Through Soils

    NASA Astrophysics Data System (ADS)

    Kuppusamy, T.; Sheng, J.; Parker, J. C.; Lenhard, R. J.

    1987-04-01

    A finite-element model is developed for multiphase flow through soil involving three immiscible fluids: namely, air, water, and a nonaqueous phase liquid (NAPL). A variational method is employed for the finite-element formulation corresponding to the coupled differential equations governing flow in a three-fluid phase porous medium system with constant air phase pressure. Constitutive relationships for fluid conductivities and saturations as functions of fluid pressures, which are derived in a companion paper by J. C. Parker et al. (this issue) and which may be calibrated from two-phase laboratory measurements, are employed in the finite-element program. The solution procedure uses backward time integration with iteration by a modified Picard method to handle the nonlinear properties. Laboratory experiments involving water displacement from soil columns by p cymene (a benzene-derivative hydrocarbon) under constant pressure were simulated by the finite-element program to validate the numerical model and formulation for constitutive properties. Transient water outflow predicted using independently measured saturation-capillary head data agreed with observed outflow data within the limits of precision of the predi