Evaluation of Oceanic Surface Observation for Reproducing the Upper Ocean Structure in ECHAM5/MPI-OM

NASA Astrophysics Data System (ADS)

Luo, Hao; Zheng, Fei; Zhu, Jiang

2017-12-01

Better constraints of initial conditions from data assimilation are necessary for climate simulations and predictions, and they are particularly important for the ocean due to its long climate memory; as such, ocean data assimilation (ODA) is regarded as an effective tool for seasonal to decadal predictions. In this work, an ODA system is established for a coupled climate model (ECHAM5/MPI-OM), which can assimilate all available oceanic observations using an ensemble optimal interpolation approach. To validate and isolate the performance of different surface observations in reproducing air-sea climate variations in the model, a set of observing system simulation experiments (OSSEs) was performed over 150 model years. Generally, assimilating sea surface temperature, sea surface salinity, and sea surface height (SSH) can reasonably reproduce the climate variability and vertical structure of the upper ocean, and assimilating SSH achieves the best results compared to the true states. For the El Niño-Southern Oscillation (ENSO), assimilating different surface observations captures true aspects of ENSO well, but assimilating SSH can further enhance the accuracy of ENSO-related feedback processes in the coupled model, leading to a more reasonable ENSO evolution and air-sea interaction over the tropical Pacific. For ocean heat content, there are still limitations in reproducing the long time-scale variability in the North Atlantic, even if SSH has been taken into consideration. These results demonstrate the effectiveness of assimilating surface observations in capturing the interannual signal and, to some extent, the decadal signal but still highlight the necessity of assimilating profile data to reproduce specific decadal variability.

A Record-High Ocean Bottom Pressure in the South Pacific Observed by GRACE

NASA Technical Reports Server (NTRS)

Boening, Carmen; Lee, Tong; Zlotnicki, Victor

2011-01-01

In late 2009 to early 2010, the Gravity Recovery and Climate Experiment (GRACE) satellite pair observed a record increase in ocean bottom pressure (OBP) over a large mid-latitude region of the South East Pacific. Its magnitude is substantially larger than other oceanic events in the Southern Hemisphere found in the entire GRACE data records (2003-2010) on multi-month time scales. The OBP data help to understand the nature of a similar signal in sea surface height (SSH) anomaly observed by altimetry: the SSH increase is mainly due to mass convergence. Analysis of the barotropic vorticity equation using scatterometer data, atmospheric reanalysis product, and GRACE and altimeter an atmospheric reanalysis product observations suggests that the observed OBP/SSH signal was primarily caused by wind stress curl associated with a strong and persistent anticyclone in late 2009 in combination with effects of planetary vorticity gradient, bottom topography, and friction

Blue and Fin Whale Habitat Modeling from Long-Term Year-Round Passive Acoustic Data from the Southern California Bight

DTIC Science & Technology

2015-09-30

SST), sea surface height anomaly (SSH), chlorophyll a concentration (Chla), and primary productivity (PP). These data are available on similar...between the high and low area, and in areas with low abundance, chlorophyll a concentration was also a significant explanatory variable. For fin

Seasonal and Interannual Variability of the Brazil - Malvinas Front: an Altimetry Perspective

NASA Astrophysics Data System (ADS)

Saraceno, M.; Valla, D.; Pelegrí, J. L.; Piola, A. R.

2016-02-01

The Brazil and Malvinas Confluence in the Southwestern Atlantic is one of the most energetic regions of the world ocean. Using recent measurements of sub-surface velocity currents, collected along 2348 nautical miles with a vessel mounted acoustic Doppler profiler onboard R/V BIO Hespérides, we validate geostrophic velocities derived from gridded fields of sea surface height (SSH). A remarkable correspondence between in-situ surface hydrographic data collected from the vessel and satellite sea surface temperature (SST), color and altimetry data allows selecting a specific SSH contour to track the position of the Brazil-Malvinas front. We then use 22 years of SSH data distributed by AVISO to show that the Brazil-Malvinas front shows a NS orientation in winter and a NE-SW orientation in summer, in good agreement with results based on the analysis of SST gradients. Furthermore, a clear southward migration of the front during the 22 year period is observed. The migration is associated with the southward shift of the South Atlantic high-pressure system that is in turn related to large climate changes in the southern portion of the South American continent. The seasonal variability in the orientation of the front is related to the Brazil and Malvinas encountering currents.

Tracking the Polar Front south of New Zealand using penguin dive data

NASA Astrophysics Data System (ADS)

Sokolov, Serguei; Rintoul, Stephen R.; Wienecke, Barbara

2006-04-01

Nearly 36,000 vertical temperature profiles collected by 15 king penguins are used to map oceanographic fronts south of New Zealand. There is good correspondence between Antarctic Circumpolar Current (ACC) front locations derived from temperatures sampled in the upper 150 m along the penguin tracks and front positions inferred using maps of sea surface height (SSH). Mesoscale features detected in the SSH maps from this eddy-rich region are also reproduced in the individual temperature sections based on dive data. The foraging strategy of Macquarie Island king penguins appears to be influenced strongly by oceanographic structure: almost all the penguin dives are confined to the region close to and between the northern and southern branches of the Polar Front. Surface chlorophyll distributions also reflect the influence of the ACC fronts, with the northern branch of the Polar Front marking a boundary between low surface chlorophyll to the north and elevated values to the south.

Detection of Rossby Waves in Multi-Parameters in Multi-Mission Satellite Observations and HYCOM Simulations in the Indian Ocean

NASA Technical Reports Server (NTRS)

Subrahmanyam, Bulusu; Heffner, David M.; Cromwell, David; Shriver, Jay F.

2009-01-01

Rossby waves are difficult to detect with in situ methods. However, as we show in this paper, they can be clearly identified in multi-parameters in multi-mission satellite observations of sea surface height (SSH), sea surface temperature (SST) and ocean color observations of chlorophyll-a (chl-a), as well as 1/12-deg global HYbrid Coordinate Ocean Model (HYCOM) simulations of SSH, SST and sea surface salinity (SSS) in the Indian Ocean. While the surface structure of Rossby waves can be elucidated from comparisons of the signal in different sea surface parameters, models are needed to gain direct information about how these waves affect the ocean at depth. The first three baroclinic modes of the Rossby waves are inferred from the Fast Fourier Transform (FFT), and two-dimensional Radon Transform (2D RT). At many latitudes the first and second baroclinic mode Rossby wave phase speeds from satellite observations and model parameters are identified.

Estimating the Ocean Flow Field from Combined Sea Surface Temperature and Sea Surface Height Data

NASA Technical Reports Server (NTRS)

Stammer, Detlef; Lindstrom, Eric (Technical Monitor)

2002-01-01

This project was part of a previous grant at MIT that was moved over to the Scripps Institution of Oceanography (SIO) together with the principal investigator. The final report provided here is concerned only with the work performed at SIO since January 2000. The primary focus of this project was the study of the three-dimensional, absolute and time-evolving general circulation of the global ocean from a combined analysis of remotely sensed fields of sea surface temperature (SST) and sea surface height (SSH). The synthesis of those two fields was performed with other relevant physical data, and appropriate dynamical ocean models with emphasis on constraining ocean general circulation models by a combination of both SST and SSH data. The central goal of the project was to improve our understanding and modeling of the relationship between the SST and its variability to internal ocean dynamics, and the overlying atmosphere, and to explore the relative roles of air-sea fluxes and internal ocean dynamics in establishing anomalies in SST on annual and longer time scales. An understanding of those problems will feed into the general discussion on how SST anomalies vary with time and the extend to which they interact with the atmosphere.

Trends in Arctic Ocean bottom pressure, sea surface height and freshwater content using GRACE and the ice-ocean model PIOMAS from 2008-2012

NASA Astrophysics Data System (ADS)

Peralta-Ferriz, Cecilia; Morison, James; Zhang, Jinlun; Bonin, Jennifer

2014-05-01

The variability of ocean bottom pressure (OBP) in the Arctic is dominated by the variations in sea surface height (SSH) from daily to monthly timescales. Conversely, OBP variability is dominated by the changes in the steric pressure (StP) at inter-annual timescales, particularly off the continental shelves. The combination of GRACE-derived ocean bottom pressure and ICESat altimetry-derived sea surface height variations in the Arctic Ocean have provided new means of identifying inter-annual trends in StP (StP = OBP-SSH) and associated freshwater content (FWC) of the Arctic region (Morison et al., 2012). Morison et al. (2012) showed that from 2004 to 2008, the FWC increased in the Beaufort Gyre and decreased in the Siberian and Central Arctic, resulting in a relatively small net basin-averaged FWC change. In this work, we investigate the inter-annual trends from 2008 to 2012 in OBP from GRACE, SSH from the state-of-the-art pan-Arctic ocean model PIOMAS -validated with tide and pressure gauges in the Arctic-, and compute the trends in StP and FWC from 2008-2012. We compare these results with the previous trends from 2005-2008 described in Morison et al. (2012). Our initial findings suggest increased salinity in the entire Arctic basin (relative to the climatological seasonal variation) from 2008-2012, compared to the preceding four years (2005-2008). We also find that the trends in OBP, SSH and StP from 2008-2012 present a different behavior during the spring-summer and fall-winter, unlike 2005-2008, in which the trends were generally consistent through all months of the year. It seems since 2009, when the Beaufort Gyre relaxed and the export of freshwater from the Canada Basin into the Canadian Archipelago and Fram Strait, via the Lincoln Sea, was anomalously large (de Steur et al., 2013), the Arctic Ocean has entered a new circulation regime. The causes of such changes in the inter-annual trends of OBP, SSH and StP -hence FWC-, associated with the changes in the shape and strength of the Arctic Oscillation (AO) and the wind patterns, as well as with the changes in sea ice conditions will be explored. References: Morison, J., R. Kwok, C. Peralta-Ferriz, M. Alkire, I. Rigor, R. Andersen, and M. Steele, Changing Arctic Ocean Freshwater Pathways Measured With ICESat and GRACE, Nature, 481, 66-70, DOI: 10.1038/nature10705, 2012. de Steur, L., et al. (2013), Hydrographic changes in the Lincoln Sea in the Arctic Ocean with focus on an upper ocean freshwater anomaly between 2007 and 2010, J. Geophys. Res. Oceans, 118, 4699-4715, doi:10.1002/jgrc.20341.

High-frequency fluctuations in Denmark Strait transport

NASA Astrophysics Data System (ADS)

Haine, T. W. N.

2010-07-01

Denmark Strait ocean current transport exhibits quasi-regular fluctuations immediately south of the sill with periods of 2-4 days. The transport variability is similar to the mean transport itself. Using a circulation model we explore prospects to monitor the fluctuations. The model has realistic transport and shows water leaving Denmark Strait in equivalent-barotropic cyclones that are nearly geostrophic and correlate with sea-surface height (SSH). Existing satellite altimeter observations of SSH have adequate space/time sampling to reconstruct the transport fluctuations using a regression developed from the model results, but measurement error overwhelms the signal. From the model results, the pending Surface Water and Ocean Topography (SWOT) wide-swath altimeter appears accurate enough, and with good-enough coverage, to allow the transport fluctuations to be reconstructed. Bottom pressure recorders at the exit of the Denmark Strait can also reproduce the transport variability.

Spatial-temporal patterns and driving mechanisms of semiannual variations in the Philippine Sea

NASA Astrophysics Data System (ADS)

Zhao, Jun; Li, Yuanlong; Wang, Fan; Zhai, Fangguo; Yu, Xiaolin

2012-10-01

Satellite altimetric sea surface height (SSH) measurements from 1992 through 2010 are used to explore the oceanic semiannual variations in the Philippine Sea (PS). Pronounced semiannual SSH variations are detected within two zonal bands. One lies east of Luzon Strait (19°-22°N) in the northern PS, while the other is southeast of Mindanao coast (4°-7°N) in the southern PS. In the two near-coast boxes where semiannual harmonic amplitude exceeds 4 cm, the northern box (127°-133°E, 19°-22°N) and the southern box (127°-133°E, 4°-7°N), semiannual changes contribute considerably to the total annual SSH variance by 12% and 17%, respectively. Despite prominent SSH variability, the bifurcation latitude of the North Equatorial Current (NBL) exhibits weak fluctuations with a peak-to-peak difference of only 0.3° on semiannual time scale. While the in-phase annual SSH variations between the two boxes work together to enhance annual NBL changes, their out-of-phase semiannual SSH variations offset each other in driving the NBL displacements. Further analysis with a 11/2-layer reduced-gravity model forced by ECMWF wind stress reveals that the observed semiannual SSH variations are primarily driven by local wind forcing in the far western Pacific. Rossby wave signals propagating from the eastern/central Pacific contribute much less due to along-path dispersion and cancellation. Semiannual signals of wind field in the northern PS reflect mainly the semiannual changes of the Asian Monsoon system, while those in the southern PS arise from the combined effects of Monsoon transition and the annual migration of the intertropical convergence zone (ITCZ).

Mapping coastal sea level at high resolution with radar interferometry: the SWOT Mission

NASA Astrophysics Data System (ADS)

Fu, L. L.; Chao, Y.; Laignel, B.; Turki, I., Sr.

2017-12-01

The spatial resolution of the present constellation of radar altimeters in mapping two-dimensional sea surface height (SSH) variability is approaching 100 km (in wavelength). At scales shorter than 100 km, the eddies and fronts are responsible for the stirring and mixing of the ocean, especially important in the various coastal processes. A mission currently in development will make high-resolution measurement of the height of water over the ocean as well as on land. It is called Surface Water and Ocean Topography (SWOT), which is a joint mission of US NASA and French CNES, with contributions from Canada and UK. SWOT will carry a pair of interferometry radars and make 2-dimensional SSH measurements over a swath of 120 km with a nadir gap of 20 km in a 21-day repeat orbit. The synthetic aperture radar of SWOT will make SSH measurement at extremely high resolution of 10-70 m. SWOT will also carry a nadir looking conventional altimeter and make 1-dimensional SSH measurements along the nadir gap. The temporal sampling varies from 2 repeats per 21 days at the equator to more than 4 repeats at mid latitudes and more than 6 at high latitudes. This new mission will allow a continuum of fine-scale observations from the open ocean to the coasts, estuaries and rivers, allowing us to investigate a number of scientific and technical questions in the coastal and estuarine domain to assess the coastal impacts of regional sea level change, such as the interaction of sea level with river flow, estuary inundation, storm surge, coastal wetlands, salt water intrusion, etc. As examples, we will illustrate the potential impact of SWOT to the studies of the San Francisco Bay Delta, and the Seine River estuary, etc. Preliminary results suggest that the SWOT Mission will provide fundamental data to map the spatial variability of water surface elevations under different hydrodynamic conditions and at different scales (local, regional and global) to improve our knowledge of the complex physical processes in the coastal and estuarine systems in response to global sea level changes.

Eddy heat flux across the Antarctic Circumpolar Current estimated from sea surface height standard deviation

NASA Astrophysics Data System (ADS)

Foppert, Annie; Donohue, Kathleen A.; Watts, D. Randolph; Tracey, Karen L.

2017-08-01

Eddy heat flux (EHF) is a predominant mechanism for heat transport across the zonally unbounded mean flow of the Antarctic Circumpolar Current (ACC). Observations of dynamically relevant, divergent, 4 year mean EHF in Drake Passage from the cDrake project, as well as previous studies of atmospheric and oceanic storm tracks, motivates the use of sea surface height (SSH) standard deviation, H*, as a proxy for depth-integrated, downgradient, time-mean EHF (>[EHF>¯>]) in the ACC. Statistics from the Southern Ocean State Estimate corroborate this choice and validate throughout the ACC the spatial agreement between H* and >[EHF>¯>] seen locally in Drake Passage. Eight regions of elevated >[EHF>¯>] are identified from nearly 23.5 years of satellite altimetry data. Elevated cross-front exchange usually does not span the full latitudinal width of the ACC in each region, implying a hand-off of heat between ACC fronts and frontal zones as they encounter the different >[EHF>¯>] hot spots along their circumpolar path. Integrated along circumpolar streamlines, defined by mean SSH contours, there is a convergence of ∮>[EHF>¯>] in the ACC: 1.06 PW enters from the north and 0.02 PW exits to the south. Temporal trends in low-frequency [EHF] are calculated in a running-mean sense using H* from overlapping 4 year subsets of SSH. Significant increases in downgradient [EHF] magnitude have occurred since 1993 at Kerguelen Plateau, Southeast Indian Ridge, and the Brazil-Malvinas Confluence, whereas the other five >[EHF>¯>] hot spots have insignificant trends of varying sign.

Intraseasonal Variability of the Equatorial Indian Ocean Observed from Sea Surface Height, Wind, and Temperature Data

NASA Technical Reports Server (NTRS)

Fu, Lee-Lueng

2007-01-01

The forcing of the equatorial Indian Ocean by the highly periodic monsoon wind cycle creates many interesting intraseasonal variabilities. The frequency spectrum of the wind stress observations from the European Remote Sensing Satellite scatterometers reveals peaks at the seasonal cycle and its higher harmonics at 180, 120, 90, and 75 days. The observations of sea surface height (SSH) from the Jason and Ocean Topography Experiment (TOPEX)/Poseidon radar altimeters are analyzed to study the ocean's response. The focus of the study is on the intraseasonal periods shorter than the annual period. The semiannual SSH variability is characterized by a basin mode involving Rossby waves and Kelvin waves traveling back and forth in the equatorial Indian Ocean between 10(deg)S and 10(deg)N. However, the interference of these waves with each other masks the appearance of individual Kelvin and Rossby waves, leading to a nodal point (amphidrome) of phase propagation on the equator at the center of the basin. The characteristics of the mode correspond to a resonance of the basin according to theoretical models. The theory also calls for similar modes at 90 and 60 days.

Dynamic Topography and Sea Level Anomalies of the Southern Ocean: Variability and Teleconnections

NASA Astrophysics Data System (ADS)

Armitage, Thomas W. K.; Kwok, Ron; Thompson, Andrew F.; Cunningham, Glenn

2018-01-01

This study combines sea surface height (SSH) estimates of the ice-covered Southern Ocean with conventional open-ocean SSH estimates from CryoSat-2 to produce monthly composites of dynamic ocean topography (DOT) and sea level anomaly (SLA) on a 50 km grid spanning 2011-2016. This data set reveals the full Southern Ocean SSH seasonal cycle for the first time; there is an antiphase relationship between sea level on the Antarctic continental shelf and the deeper basins, with coastal SSH highest in autumn and lowest in spring. As a result of this pattern of seasonal SSH variability, the barotropic component of the Antarctic Slope Current (ASC) has speeds that are regionally up to twice as fast in the autumn. Month-to-month circulation variability of the Ross and Weddell Gyres is strongly influenced by the local wind field, and is correlated with the local wind curl (Ross: -0.58; Weddell: -0.67). SSH variability is linked to both the Southern Oscillation and the Southern Annular Mode, dominant modes of southern hemisphere climate variability. In particular, during the strong 2015-2016 El Niño, a sustained negative coastal SLA of up to -6 cm, implying a weakening of the ASC, was observed in the Pacific sector of the Southern Ocean. The ability to examine sea level variability in the seasonally ice-covered regions of the Southern Ocean—climatically important regions with an acute sparsity of data—makes this new merged sea level record of particular interest to the Southern Ocean oceanography and glaciology communities.

Simulation and assimilation of satellite altimeter data at the oceanic mesoscale

NASA Technical Reports Server (NTRS)

Demay, P.; Robinson, A. R.

1984-01-01

An improved "objective analysis' technique is used along with an altimeter signal statistical model, an altimeter noise statistical model, an orbital model, and synoptic surface current maps in the POLYMODE-SDE area, to evaluate the performance of various observational strategies in catching the mesoscale variability at mid-latitudes. In particular, simulated repetitive nominal orbits of ERS-1, TOPEX, and SPOT/POSEIDON are examined. Results show the critical importance of existence of a subcycle, scanning in either direction. Moreover, long repeat cycles ( 20 days) and short cross-track distances ( 300 km) seem preferable, since they match mesoscale statistics. Another goal of the study is to prepare and discuss sea-surface height (SSH) assimilation in quasigeostrophic models. Restored SSH maps are shown to meet that purpose, if an efficient extrapolation method or deep in-situ data (floats) are used on the vertical to start and update the model.

Identifying Environmental Risk Factors of Cholera in a Coastal Area with Geospatial Technologies

PubMed Central

Xu, Min; Cao, Chunxiang; Wang, Duochun; Kan, Biao

2014-01-01

Satellites contribute significantly to environmental quality and public health. Environmental factors are important indicators for the prediction of disease outbreaks. This study reveals the environmental factors associated with cholera in Zhejiang, a coastal province of China, using both Remote Sensing (RS) and Geographic information System (GIS). The analysis validated the correlation between the indirect satellite measurements of sea surface temperature (SST), sea surface height (SSH) and ocean chlorophyll concentration (OCC) and the local cholera magnitude based on a ten-year monthly data from the year 1999 to 2008. Cholera magnitude has been strongly affected by the concurrent variables of SST and SSH, while OCC has a one-month time lag effect. A cholera prediction model has been established based on the sea environmental factors. The results of hot spot analysis showed the local cholera magnitude in counties significantly associated with the estuaries and rivers. PMID:25551518

Identifying environmental risk factors of cholera in a coastal area with geospatial technologies.

PubMed

Xu, Min; Cao, Chunxiang; Wang, Duochun; Kan, Biao

2014-12-29

Satellites contribute significantly to environmental quality and public health. Environmental factors are important indicators for the prediction of disease outbreaks. This study reveals the environmental factors associated with cholera in Zhejiang, a coastal province of China, using both Remote Sensing (RS) and Geographic information System (GIS). The analysis validated the correlation between the indirect satellite measurements of sea surface temperature (SST), sea surface height (SSH) and ocean chlorophyll concentration (OCC) and the local cholera magnitude based on a ten-year monthly data from the year 1999 to 2008. Cholera magnitude has been strongly affected by the concurrent variables of SST and SSH, while OCC has a one-month time lag effect. A cholera prediction model has been established based on the sea environmental factors. The results of hot spot analysis showed the local cholera magnitude in counties significantly associated with the estuaries and rivers.

Blue and Fin Whale Habitat Modeling from Long-Term Year-Round Passive Acoustic Data from the Southern California Bight

DTIC Science & Technology

2014-09-30

be used for habitat modeling include sea surface temperature (SST), sea surface height (SSH), chlorophyll a concentration, and primary production...1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Blue and Fin Whale Habitat Modeling from Long-Term Year...predictive, year-round habitat models of the presence of calling blue and fin whales in the Southern California Bight, to facilitate Navy’s operational

Potential of space-borne GNSS reflectometry to constrain simulations of the ocean circulation. A case study for the South African current system

NASA Astrophysics Data System (ADS)

Saynisch, Jan; Semmling, Maximilian; Wickert, Jens; Thomas, Maik

2015-11-01

The Agulhas current system transports warm and salty water masses from the Indian Ocean into the Southern Ocean and into the Atlantic. The transports impact past, present, and future climate on local and global scales. The size and variability, however, of the respective transports are still much debated. In this study, an idealized model based twin experiment is used to study whether sea surface height (SSH) anomalies estimated from reflected signals of the Global Navigation Satellite System reflectometry (GNSS-R) can be used to determine the internal water mass properties and transports of the Agulhas region. A space-borne GNSS-R detector on the International Space Station (ISS) is assumed and simulated. The detector is able to observe daily SSH fields with a spatial resolution of 1-5∘. Depending on reflection geometry, the precision of a single SSH observation is estimated to reach 3 cm (20 cm) when the carrier phase (code delay) information of the reflected GNSS signal is used. The average precision over the Agulhas region is 7 cm (42 cm). The proposed GNSS-R measurements surpass the radar-based satellite altimetry missions in temporal and spatial resolution but are less precise. Using the estimated GNSS-R characteristics, measurements of SSH are generated by sampling a regional nested general circulation model of the South African oceans. The artificial observations are subsequently assimilated with a 4DVAR adjoint data assimilation method into the same ocean model but with a different initial state and forcing. The assimilated and the original, i.e., the sampled model state, are compared to systematically identify improvements and degradations in the model variables that arise due to the assimilation of GNSS-R based SSH observations. We show that SSH and the independent, i.e., not assimilated model variables velocity, temperature, and salinity improve by the assimilation of GNSS-R based SSH observations. After the assimilation of 90 days of SSH observations, improvements in the independent variables cover the whole water column. Locally, up to 39 % of the original model state are recovered. Shorter assimilation windows result in enhanced reproduction of the observed and assimilated SSH but are accompanied by an insufficient or wrong recovery of sub-surface water properties. The assimilation of real GNSS-R observations, when available, and consequently the estimation of Agulhas water mass properties and the leakage of heat and salt into the Atlantic will benefit from this model-based study.

Do Assimilated Drifter Velocities Improve Lagrangian Predictability in an Operational Ocean Model?

DTIC Science & Technology

2015-05-01

extended Kalman filter . Molcard et al. (2005) used a statistical method to cor- relate model and drifter velocities. Taillandier et al. (2006) describe the... temperature and salinity observations. Trajectory angular differ- ences are also reduced. 1. Introduction The importance of Lagrangian forecasts was seen... Temperature , salinity, and sea surface height (SSH, measured along-track by satellite altimeters) observa- tions are typically assimilated in

Wind Forcing of the Pacific Ocean Using Scatterometer Wind Data

NASA Technical Reports Server (NTRS)

Kelly, Kathryn A.

1999-01-01

The long-term objective of this research was an understanding of the wind-forced ocean circulation, particularly for the Pacific Ocean. To determine the ocean's response to the winds, we first needed to generate accurate maps of wind stress. For the ocean's response to wind stress we examined the sea surface height (SSH) both from altimeters and from numerical models for the Pacific Ocean.

NASA RapidScat Observes El Nino Blowing in the Winds

NASA Image and Video Library

2016-01-21

While El Niño events have a significant impact on the entire Earth System, they are most easily visible in measurements of sea surface temperature (SST), sea surface height (SSH) and ocean winds near the surface. In fact, the precursor and the main driver of El Niño events is manifested in the weakening of the normally westward blowing trade winds, or even their complete reversal to blow from west to east, in the Western and Central tropical Pacific. http://photojournal.jpl.nasa.gov/catalog/PIA20365

Can We Infer Ocean Dynamics from Altimeter Wavenumber Spectra?

NASA Technical Reports Server (NTRS)

Richman, James; Shriver, Jay; Arbic, Brian

2012-01-01

The wavenumber spectra of sea surface height (SSH) and kinetic energy (KE) have been used to infer the dynamics of the ocean. When quasi-geostrophic dynamics (QG) or surface quasi-geostrophic (SQG) turbulence dominate and an inertial subrange exists, a steep SSH wavenumber spectrum is expected with k-5 for QG turbulence and a flatter k-11/3 for SQG turbulence. However, inspection of the spectral slopes in the mesoscale band of 70 to 250 km shows that the altimeter wavenumber slopes typically are much flatter than the QG or SQG predictions over most of the ocean. Comparison of the altimeter wavenumber spectra with the spectra estimated from the output of an eddy resolving global ocean circulation model (the Hybrid Coordinate Ocean Model, HYCOM, at 1/25 resolution), which is forced by high frequency winds and includes the astronomical forcing of the sun and the moon, suggests that the flatter slopes of the altimeter may arise from three possible sources, the presence of internal waves, the lack of an inertial subrange in the 70 to 250 km band and noise or submesoscales at small scales. When the wavenumber spectra of SSH and KE are estimated near the internal tide generating regions, the resulting spectra are much flatter than the expectations of QG or SQG theory. If the height and velocity variability are separated into low frequency (periods greater than 2 days) and high frequency (periods less than a day), then a different pattern emerges with a relatively flat wavenumber spectrum at high frequency and a steeper wavenumber spectrum at low frequency. The stationary internal tides can be removed from the altimeter spectrum, which steepens the spectral slopes in the energetic internal wave regions. Away from generating regions where the internal waves

Acute Effects of Static Stretching of Hamstring on Performance and Anterior Cruciate Ligament Injury Risk During Stop-Jump and Cutting Tasks in Female Athletes.

PubMed

Ruan, Mianfang; Zhang, Qiang; Wu, Xie

2017-05-01

Ruan, M, Zhang, Q, and Wu, X. Acute effects of static stretching of hamstring on performance and anterior cruciate ligament injury risk during stop-jump and cutting tasks in female athletes. J Strength Cond Res 31(5): 1241-1250, 2017-There is limited research investigating antagonist stretch. The purpose of this study was to evaluate the influence of static stretching of hamstrings (SSH) on performance and anterior cruciate ligament (ACL) injury risk during stop-jump and 180° cutting tasks. Twelve female college athletes (age 20.8 ± 0.7 years; height 1.61 ± 0.05 m; mass 54.25 ± 4.22 kg) participated in this study. Subjects performed stop-jump and 180° cutting tasks under 2 conditions: after warm-up with 4 × 30 seconds SSH or after warm-up without SSH. Three-dimensional kinematic and kinetic data as well as electromyography of biceps femoris, rectus femoris, vastus medialis, and gastrocnemius medialis were collected during testing. Static stretching of hamstrings significantly enhanced jump height by 5.1% (p = 0.009) but did not change the takeoff speed of cutting. No significant changes in peak knee adduction moment or peak anterior tibia shear force were observed with SSH regardless of the task. The peak lateral tibia shear force during cutting was significantly (p = 0.036) reduced with SSH. The co-contraction of hamstring and quadriceps during the preactivation (stop-jump: p = 0.04; cutting: p = 0.05) and downward phases (stop-jump: p = 0.04; cutting: p = 0.05) was significantly reduced after SSH regardless of the task. The results suggest that SSH enhanced the performance of stop-jump because of decreased co-contraction of hamstring and quadriceps but did not change the performance of cutting. In addition, SSH did not increase ACL injury risk during stop-jump and cutting tasks and even reduced medial-lateral knee loading during cutting.

Acute Effects of Static Stretching of Hamstring on Performance and Anterior Cruciate Ligament Injury Risk During Stop-Jump and Cutting Tasks in Female Athletes

PubMed Central

Ruan, Mianfang; Zhang, Qiang

2017-01-01

Abstract Ruan, M, Zhang, Q, and Wu, X. Acute effects of static stretching of hamstring on performance and anterior cruciate ligament injury risk during stop-jump and cutting tasks in female athletes. J Strength Cond Res 31(5): 1241–1250, 2017—There is limited research investigating antagonist stretch. The purpose of this study was to evaluate the influence of static stretching of hamstrings (SSH) on performance and anterior cruciate ligament (ACL) injury risk during stop-jump and 180° cutting tasks. Twelve female college athletes (age 20.8 ± 0.7 years; height 1.61 ± 0.05 m; mass 54.25 ± 4.22 kg) participated in this study. Subjects performed stop-jump and 180° cutting tasks under 2 conditions: after warm-up with 4 × 30 seconds SSH or after warm-up without SSH. Three-dimensional kinematic and kinetic data as well as electromyography of biceps femoris, rectus femoris, vastus medialis, and gastrocnemius medialis were collected during testing. Static stretching of hamstrings significantly enhanced jump height by 5.1% (p = 0.009) but did not change the takeoff speed of cutting. No significant changes in peak knee adduction moment or peak anterior tibia shear force were observed with SSH regardless of the task. The peak lateral tibia shear force during cutting was significantly (p = 0.036) reduced with SSH. The co-contraction of hamstring and quadriceps during the preactivation (stop-jump: p = 0.04; cutting: p = 0.05) and downward phases (stop-jump: p = 0.04; cutting: p = 0.05) was significantly reduced after SSH regardless of the task. The results suggest that SSH enhanced the performance of stop-jump because of decreased co-contraction of hamstring and quadriceps but did not change the performance of cutting. In addition, SSH did not increase ACL injury risk during stop-jump and cutting tasks and even reduced medial-lateral knee loading during cutting. PMID:28118311

Estimation of Interbasin Transport Using Ocean Bottom Pressure: Theory and Model for Asian Marginal Seas

NASA Technical Reports Server (NTRS)

Song, Y. Tony

2006-01-01

The Asian Marginal Seas are interconnected by a number of narrow straits, such as the Makassar Strait connecting the Pacific Ocean with the Indian Ocean, the Luzon Strait connecting the South China Sea with the Pacific Ocean, and the Korea/Tsushima Strait connecting the East China Sea with the Japan/East Sea. Here we propose a method, the combination of the "geostrophic control" formula of Garrett and Toulany (1982) and the "hydraulic control" theory of Whitehead et al. (1974), allowing the use of satellite-observed sea-surface-height (SSH) and ocean-bottom-pressure (OBP) data for estimating interbasin transport. The new method also allows separating the interbasin transport into surface and bottom fluxes that play an important role in maintaining the mass balance of the regional oceans. Comparison with model results demonstrates that the combined method can estimate the seasonal variability of the strait transports and is significantly better than the method of using SSH or OBP alone.

Seasonal variability of the Red Sea, from satellite gravity, radar altimetry, and in situ observations

NASA Astrophysics Data System (ADS)

Wahr, John; Smeed, David A.; Leuliette, Eric; Swenson, Sean

2014-08-01

Seasonal variations of sea surface height (SSH) and mass within the Red Sea are caused mostly by exchange of heat with the atmosphere and by flow through the strait opening into the Gulf of Aden to the south. That flow involves a net mass transfer into the Red Sea during fall and out during spring, though in summer there is an influx of cool water at intermediate depths. Thus, summer water in the south is warmer near the surface due to higher air temperatures, but cooler at intermediate depths. Summer water in the north experiences warming by air-sea exchange only. The temperature affects water density, which impacts SSH but has no effect on mass. We study this seasonal cycle by combining GRACE mass estimates, altimeter SSH measurements, and steric contributions derived from the World Ocean Atlas temperature climatology. Among our conclusions are: mass contributions are much larger than steric contributions; the mass is largest in winter, consistent with winds pushing water into the Red Sea in fall and out during spring; the steric signal is largest in summer, consistent with surface warming; and the cool, intermediate-depth water flowing into the Red Sea in spring has little impact on the steric signal, because contributions from the lowered temperature are offset by effects of decreased salinity. The results suggest that the combined use of altimeter and GRACE measurements can provide a useful alternative to in situ data for monitoring the steric signal.

Three modes of interdecadal trends in sea surface temperature and sea surface height

NASA Astrophysics Data System (ADS)

Gnanadesikan, A.; Pradal, M.

2013-12-01

It might be thought that sea surface height and sea surface temperature would be tightly related. We show that this is not necessarily the case on a global scale. We analysed this relationship in a suite of coupled climate models run under 1860 forcing conditions. The models are low-resolution variants of the GFDL Earth System Model, reported in Galbraith et al. (J. Clim. 2011). 1. Correlated changes in global sea surface height and global sea surface temperature. This mode corresponds to opening and closing of convective chimneys in the Southern Ocean. As the Southern Ocean destratifies, sea ice formation is suppressed during the winter and more heat is taken up during the summer. This mode of variability is highly correlated with changes in the top of the atmosphere radiative budget and weakly correlated with changes in the deep ocean circulation. 2. Uncorrelated changes in global sea surface height and global sea surface temperature. This mode of variability is associated with interdecadal variabliity in tropical winds. Changes in the advective flux of heat to the surface ocean play a critical role in driving these changes, which also result in significant local changes in sea level. Changes sea ice over the Southern Ocean still result in changes in solar absorption, but these are now largely cancelled by changes in outgoing longwave radiation. 3. Anticorrelated changes in global sea surface height and global sea surface temperatures. By varying the lateral diffusion coefficient in the ocean model, we are able to enhance and suppress convection in the Southern and Northern Pacific Oceans. Increasing the lateral diffusion coefficients shifts the balance sources of deep water away from the warm salty deep water of the North Atlantic and towards cold fresh deep water from the other two regions. As a result, even though the planet as a whole warms, the deep ocean cools and sea level falls, with changes of order 30 cm over 500 years. The increase in solar absorption in polar regions is more than compensated by an increase in outgoing longwave radiation. Relationship between global SSH trend over a decade and (A) local SSH change over a decade (m/m). (B) Global SST change over a decade (m/K) (C) Portion of decadal SST change correlated with net radiation at the top of the atmosphere (m/K) (D) Portion of decadal SST change not correlated with net radiation at the top of the atmosphere.

Ocean Bottom Pressure Variation Associated with the Large Meander of the Kuroshio South of Japan in 2004-2005

NASA Astrophysics Data System (ADS)

Nagano, A.; Hasegawa, T.; Matsumoto, H.; Ariyoshi, K.

2016-02-01

The Kuroshio, the western boundary current of the North Pacific subtropical gyre, takes a stable meandering path off the southern coast of Japan, called the large meander (LM), on interannual to decadal timescales. The LM of the Kuroshio formed in July 2004 associated with the intensified anticyclonic recirculation gyre south of the Kuroshio, and gradually decayed in the latter half of 2005. The variations of the Kuroshio and the southern recirculating currents may be related to deep currents, which are expected to be associated with bottom pressure (BP) variation. In order to examine the variation of BP associated with the variations of the sea surface currents, we analyzed data of eleven pressure sensors equipped to inverted echo sounders deployed from July 2004 to October 2006. An abrupt enhancement of BP is found on the continental slope off Shikoku, lagging a few months behind an elevation of sea surface height (SSH) due to the onshore shift of the recirculation gyre associated with the LM formation. Subsequently, BP beneath the recirculation gyre dwindles, leading the gradual depression of SSH due to the decay of the LM. The relationship between BP and SSH may suggest that the occurrence and decay of the LM depend on the extension of the recirculation gyre current down to the ocean bottom.

A Real-time 1/16° Global Ocean Nowcast/Forecast System

NASA Astrophysics Data System (ADS)

Shriver, J. F.; Rhodes, R. C.; Hurlburt, H. E.; Wallcraft, A. J.; Metzger, E. J.; Smedstad, O. M.; Kara, A. B.

2001-05-01

A 1/16° eddy-resolving global ocean prediction system that uses the NRL Layered Ocean Model (NLOM) has been transitioned to the Naval Oceanographic Office (NAVO), Stennis Space Center, MS. The system gives a real time view of the ocean down to the 50-100 mile scale of ocean eddies and the meandering of ocean currents and fronts, a view with unprecedented resolution and clarity, and demonstrated forecast skill for a month or more for many ocean features. It has been running in real time at NAVO since 19 Oct 2000 with assimilation of real-time altimeter sea surface height (SSH) data (currently ERS-2, GFO and TOPEX/POSEIDON) and sea surface temperature (SST). The model is updated daily and 4-day forecasts are made daily. 30-day forecasts are made once a week. Nowcasts and forecasts using this model are viewable on the web, including SSH, SST and 30-day forecast verification statistics for many zoom regions. The NRL web address is http://www7320.nrlssc.navy.mil/global_nlom/index.html. The NAVO web address is: http://www.navo.navy.mil. Click on "Operational Products", then "Product Search Form", then "Product Type View", then select "Model Navy Layered Ocean Model" and a region and click on "Submit Query". This system is used at NAVO for ocean front and eddy analyses and predictions and to provide accurate sea surface height for use in computing synthetic temperature and salinity profiles, among other applications.

Spin-Down of the North Atlantic Subpolar Circulation

NASA Technical Reports Server (NTRS)

Hakkinen, S.; Rhines, P. B.

2004-01-01

Dramatic changes have occurred in the mid-to-high-latitude North Atlantic Ocean as evidenced by TOPEX/Poseidon observations of sea surface height (SSH) in the subpolar gyre and the Gulf Stream. Analysis of altimeter data shows that subpolar SSH has increased during the 1990s and the geostrophic velocity derived from altimeter data shows a decline in the gyre circulation. Direct current-meter observations in the boundary current of the Labrador Sea support the trend in the 199Os, and, together with hydrographic data show that in the mid-late 1990s the trend extends deep in the water column. We find that buoyancy forcing over the northern North Atlantic has a dynamic effect consistent with the altimeter data and hydrographic observations: a weak thermohaline forcing and the subsequent decay of the domed structure of the subpolar isopycnals would give rise to the observed anticyclonic circulation trend.

Neural Network Technique for Global Ocean Color (Chl-a) Estimates Bridging Multiple Satellite Missions

NASA Astrophysics Data System (ADS)

Garraffo, Z. D.; Nadiga, S.; Krasnopolsky, V.; Mehra, A.; Bayler, E. J.; Kim, H. C.; Behringer, D.

2016-02-01

A Neural Network (NN) technique is used to produce consistent global ocean color estimates, bridging multiple satellite ocean color missions by linking ocean color variability - primarily driven by biological processes - with the physical processes of the upper ocean. Satellite-derived surface variables - sea-surface temperature (SST) and sea-surface height (SSH) fields - are used as signatures of upper-ocean dynamics. The NN technique employs adaptive weights that are tuned by applying statistical learning (training) algorithms to past data sets, providing robustness with respect to random noise, accuracy, fast emulations, and fault-tolerance. This study employs Sea-viewing Wide Field-of-View Sensor (SeaWiFS) chlorophyll-a data for 1998-2010 in conjunction with satellite SSH and SST fields. After interpolating all data sets to the same two-degree latitude-longitude grid, the annual mean was removed and monthly anomalies extracted . The NN technique wass trained for even years of that period and tested for errors and bias for the odd years. The NN output are assessed for: (i) bias, (ii) variability, (iii) root-mean-square error (RMSE), and (iv) cross-correlation. A Jacobian is evaluated to estimate the impact of each input (SSH, SST) on the NN chlorophyll-a estimates. The differences between an ensemble of NNs vs a single NN are examined. After the NN is trained for the SeaWiFS period, the NN is then applied and validated for 2005-2015, a period covered by other satellite missions — the Moderate Resolution Imaging Spectroradiometer (MODIS AQUA) and the Visible Imaging Infrared Radiometer Suite (VIIRS).

Response of near-surface currents in the Indian Ocean to the anomalous atmospheric condition in 2015

NASA Astrophysics Data System (ADS)

Utari, P. A.; Nurkhakim, M. Y.; Setiabudidaya, D.; Iskandar, I.

2018-05-01

Anomalous ocean-atmosphere conditions were detected in the tropical Indian Ocean during boreal spring to boreal winter 2015. It was suggested that the anomalous conditions were characteristics of the positive Indian Ocean Dipole (pIOD) event. The purpose of this investigation was to investigate the response of near-surface currents in the tropical Indian Ocean to the anomalous atmospheric condition in 2015. Near-surface current from OSCAR (Ocean Surface Current Analyses Real Time) reanalysis data combined with the sea surface temperature (SST) data from OISST – NOAA, sea surface height (SSH) and surface winds from the ECMWF were used in this investigation. The analysis showed that the evolution of 2015 pIOD started in June/July, peaked in the September and terminated in late November 2015. Correlated with the evolution of the pIOD, easterly winds anomalies were detected along the equator. As the oceanic response to these easterly wind anomalies, the surface currents anomalously westward during the peak of the pIOD. It was interesting to note that the evolution of 2015 pIOD event was closely related to the ocean wave dynamics as revealed by the SSH data. Downwelling westward propagating Rossby waves were detected in the southwestern tropical Indian Ocean. Once reached the western boundary of the Indian Ocean, they were redirected back into interior Indian Ocean and propagating eastward as the downwelling Kelvin waves.

The seasonal march of the equatorial Pacific upper-ocean and its El Niño variability

NASA Astrophysics Data System (ADS)

Gasparin, Florent; Roemmich, Dean

2017-08-01

Based on two modern data sets, the climatological seasonal march of the upper-ocean is examined in the equatorial Pacific for the period 2004-2014, because of its large contribution to the total variance, its relationship to El Niño, and its unique equatorial wave phenomena. Argo provides a broadscale view of the equatorial Pacific upper-ocean based on subsurface temperature and salinity measurements for the period 2004-2015, and satellite altimetry provides synoptic observations of the sea surface height (SSH) for the period 1993-2015. Using either 11-year (1993-2003/2004-2014) time-series for averaging, the seasonal Rossby waves stands out clearly and eastward intraseasonal Kelvin wave propagation is strong enough in individual years to leave residuals in the 11-year averages, particularly but not exclusively, during El Niño onset years. The agreement of altimetric SSH minus Argo steric height (SH) residuals with GRACE ocean mass estimates confirms the scale-matching of in situ variability with that of satellite observations. Surface layer and subsurface thermohaline variations are both important in determining SH and SSH basin-wide patterns. The SH/SSH October-November maximum in the central-eastern Pacific is primarily due to a downward deflection of the thermocline (∼20 m), causing a warm subsurface anomaly (>1 °C), in response to the phasing of downwelling intraseasonal Kelvin and seasonal Rossby waves. Compared with the climatology, the stronger October-November maximum in the 2004-2014 El Niño composites is due to higher intraseasonal oscillations and interannual variability. Associated with these equatorial wave patterns along the thermocline, the western warm/fresh pool waters move zonally at interannual timescales through zonal wind stress and pressure gradient fluctuations, and cause substantial fresh (up to 0.6 psu) and warm (∼1 °C higher than the climatology) anomalies in the western-central Pacific surface-layer during the El Niño onset year, and of the opposite sign during the termination year. These El Niño-related patterns are then analyzed focusing on the case of the onset of the strong 2015/2016 episode, and are seen to be around two times larger than that in the 2004-2014 El Niño composites. The present work exploits the capabilities of Argo and altimetry to update and improve the description of the physical state of the equatorial Pacific upper-ocean, and provides a benchmark for assessing the accuracy of models in representing equatorial Pacific variability.

Environmental factor analysis of cholera in China using remote sensing and geographical information systems.

PubMed

Xu, M; Cao, C X; Wang, D C; Kan, B; Xu, Y F; Ni, X L; Zhu, Z C

2016-04-01

Cholera is one of a number of infectious diseases that appears to be influenced by climate, geography and other natural environments. This study analysed the environmental factors of the spatial distribution of cholera in China. It shows that temperature, precipitation, elevation, and distance to the coastline have significant impact on the distribution of cholera. It also reveals the oceanic environmental factors associated with cholera in Zhejiang, which is a coastal province of China, using both remote sensing (RS) and geographical information systems (GIS). The analysis has validated the correlation between indirect satellite measurements of sea surface temperature (SST), sea surface height (SSH) and ocean chlorophyll concentration (OCC) and the local number of cholera cases based on 8-year monthly data from 2001 to 2008. The results show the number of cholera cases has been strongly affected by the variables of SST, SSH and OCC. Utilizing this information, a cholera prediction model has been established based on the oceanic and climatic environmental factors. The model indicates that RS and GIS have great potential for designing an early warning system for cholera.

Exploring image data assimilation in the prospect of high-resolution satellite oceanic observations

NASA Astrophysics Data System (ADS)

Durán Moro, Marina; Brankart, Jean-Michel; Brasseur, Pierre; Verron, Jacques

2017-07-01

Satellite sensors increasingly provide high-resolution (HR) observations of the ocean. They supply observations of sea surface height (SSH) and of tracers of the dynamics such as sea surface salinity (SSS) and sea surface temperature (SST). In particular, the Surface Water Ocean Topography (SWOT) mission will provide measurements of the surface ocean topography at very high-resolution (HR) delivering unprecedented information on the meso-scale and submeso-scale dynamics. This study investigates the feasibility to use these measurements to reconstruct meso-scale features simulated by numerical models, in particular on the vertical dimension. A methodology to reconstruct three-dimensional (3D) multivariate meso-scale scenes is developed by using a HR numerical model of the Solomon Sea region. An inverse problem is defined in the framework of a twin experiment where synthetic observations are used. A true state is chosen among the 3D multivariate states which is considered as a reference state. In order to correct a first guess of this true state, a two-step analysis is carried out. A probability distribution of the first guess is defined and updated at each step of the analysis: (i) the first step applies the analysis scheme of a reduced-order Kalman filter to update the first guess probability distribution using SSH observation; (ii) the second step minimizes a cost function using observations of HR image structure and a new probability distribution is estimated. The analysis is extended to the vertical dimension using 3D multivariate empirical orthogonal functions (EOFs) and the probabilistic approach allows the update of the probability distribution through the two-step analysis. Experiments show that the proposed technique succeeds in correcting a multivariate state using meso-scale and submeso-scale information contained in HR SSH and image structure observations. It also demonstrates how the surface information can be used to reconstruct the ocean state below the surface.

Regional sea level variability in a high-resolution global coupled climate model

NASA Astrophysics Data System (ADS)

Palko, D.; Kirtman, B. P.

2016-12-01

The prediction of trends at regional scales is essential in order to adapt to and prepare for the effects of climate change. However, GCMs are unable to make reliable predictions at regional scales. The prediction of local sea level trends is particularly critical. The main goal of this research is to utilize high-resolution (HR) (0.1° resolution in the ocean) coupled model runs of CCSM4 to analyze regional sea surface height (SSH) trends. Unlike typical, lower resolution (1.0°) GCM runs these HR runs resolve features in the ocean, like the Gulf Stream, which may have a large effect on regional sea level. We characterize the variability of regional SSH along the Atlantic coast of the US using tide gauge observations along with fixed radiative forcing runs of CCSM4 and HR interactive ensemble runs. The interactive ensemble couples an ensemble mean atmosphere with a single ocean realization. This coupling results in a 30% decrease in the strength of the Atlantic meridional overturning circulation; therefore, the HR interactive ensemble is analogous to a HR hosing experiment. By characterizing the variability in these high-resolution GCM runs and observations we seek to understand what processes influence coastal SSH along the Eastern Coast of the United States and better predict future SLR.

Lessons Learned from Assimilating Altimeter Data into a Coupled General Circulation Model with the GMAO Augmented Ensemble Kalman Filter

NASA Technical Reports Server (NTRS)

Keppenne, Christian; Vernieres, Guillaume; Rienecker, Michele; Jacob, Jossy; Kovach, Robin

2011-01-01

Satellite altimetry measurements have provided global, evenly distributed observations of the ocean surface since 1993. However, the difficulties introduced by the presence of model biases and the requirement that data assimilation systems extrapolate the sea surface height (SSH) information to the subsurface in order to estimate the temperature, salinity and currents make it difficult to optimally exploit these measurements. This talk investigates the potential of the altimetry data assimilation once the biases are accounted for with an ad hoc bias estimation scheme. Either steady-state or state-dependent multivariate background-error covariances from an ensemble of model integrations are used to address the problem of extrapolating the information to the sub-surface. The GMAO ocean data assimilation system applied to an ensemble of coupled model instances using the GEOS-5 AGCM coupled to MOM4 is used in the investigation. To model the background error covariances, the system relies on a hybrid ensemble approach in which a small number of dynamically evolved model trajectories is augmented on the one hand with past instances of the state vector along each trajectory and, on the other, with a steady state ensemble of error estimates from a time series of short-term model forecasts. A state-dependent adaptive error-covariance localization and inflation algorithm controls how the SSH information is extrapolated to the sub-surface. A two-step predictor corrector approach is used to assimilate future information. Independent (not-assimilated) temperature and salinity observations from Argo floats are used to validate the assimilation. A two-step projection method in which the system first calculates a SSH increment and then projects this increment vertically onto the temperature, salt and current fields is found to be most effective in reconstructing the sub-surface information. The performance of the system in reconstructing the sub-surface fields is particularly impressive for temperature, but not as satisfactory for salt.

Spectra of Baroclinic Inertia-Gravity Wave Turbulence

NASA Technical Reports Server (NTRS)

Glazman, Roman E.

1996-01-01

Baroclinic inertia-gravity (IG) waves form a persistent background of thermocline depth and sea surface height oscillations. They also contribute to the kinetic energy of horizontal motions in the subsurface layer. Measured by the ratio of water particle velocity to wave phase speed, the wave nonlinearity may be rather high. Given a continuous supply of energy from external sources, nonlinear wave-wave interactions among IG waves would result in inertial cascades of energy, momentum, and wave action. Based on a recently developed theory of wave turbulence in scale-dependent systems, these cascades are investigated and IG wave spectra are derived for an arbitrary degree of wave nonlinearity. Comparisons with satellite-altimetry-based spectra of surface height variations and with energy spectra of horizontal velocity fluctuations show good agreement. The well-known spectral peak at the inertial frequency is thus explained as a result of the inverse cascade. Finally, we discuss a possibility of inferring the internal Rossby radius of deformation and other dynamical properties of the upper thermocline from the spectra of SSH (sea surface height) variations based on altimeter measurements.

Transport of the Norwegian Atlantic current as determined from satellite altimetry

NASA Technical Reports Server (NTRS)

Pistek, Pavel; Johnson, Donald R.

1992-01-01

Relatively warm and salty North Atlantic surface waters flow through the Faeroe-Shetland Channel into the higher latitudes of the Nordic Seas, preserving an ice-free winter environment for much of the exterior coast of northern Europe. This flow was monitored along the Norwegian coast using Geosat altimetry on two ascending arcs during the Exact Repeat Mission in 1987-1989. Concurrent undertrack CTD surveys were used to fix a reference surface for the altimeter-derived SSH anomalies, in effect creating time series of alongtrack surface dynamic height topographies. Climatologic CTD casts were then used, with empirical orthogonal function (EOF) analysis, to derive relationships between historical surface dynamic heights and vertical temperature and salinity profiles. Applying these EOF relationships to the altimeter signals, mean transports of volume, heat, and salt were calculated at approximately 2.9 Sverdrups, 8.1 x 10 exp 11 KCal/s and 1.0 x 10 exp 8 Kg/s, respectively. Maximum transports occurred in February/March and minimum in July/August.

The Global Mode-1 S2 Internal Tide

NASA Astrophysics Data System (ADS)

Zhao, Zhongxiang

2017-11-01

The global mode-1 S2 internal tide is observed using sea surface height (SSH) measurements from four satellite altimeters: TOPEX/Poseidon, Jason-1, Jason-2, and Geosat Follow-On. Plane wave analysis is employed to extract three mode-1 S2 internal tidal waves in any given 250 km by 250 km window, which are temporally coherent over a 20 year period from 1992 to 2012. Depth-integrated energy and flux of the S2 internal tide are calculated from the SSH amplitude and a conversion function built from climatological hydrographic profiles in the World Ocean Atlas 2013. The results show that the S2 and M2 internal tides have similar spatial patterns. Both S2 and M2 internal tides originate at major topographic features and propagate over long distances. The S2 internal tidal beams are generally shorter, likely because the relatively weaker S2 internal tide is easily overwhelmed by nontidal noise. The northbound S2 and M2 internal tides from the Hawaiian Ridge are observed to travel over 3500 km across the Northeast Pacific. The globally integrated energy of the mode-1 S2 internal tide is 7.8 PJ (1 PJ = 1015 J), about 20% that of M2 (36.4 PJ). The histogram of S2 to M2 SSH ratios peaks at 0.4, consistent with the square root of their energy ratio. In terms of SSH, S2 is greater than M2 in ≈10% of the global ocean and ≥50% of M2 in about half of the global ocean.

Constraining a Coastal Ocean Model by Surface Observations Using an Ensemble Kalman Filter

NASA Astrophysics Data System (ADS)

De Mey, P. J.; Ayoub, N. K.

2016-02-01

We explore the impact of assimilating sea surface temperature (SST) and sea surface height (SSH) observations in the Bay of Biscay (North-East Atlantic). The study is conducted in the SYMPHONIE coastal circulation model (Marsaleix et al., 2009) on a 3kmx3km grid, with 43 sigma levels. Ensembles are generated by perturbing the wind forcing to analyze the model error subspace spanned by its response to wind forcing uncertainties. The assimilation method is a 4D Ensemble Kalman Filter algorithm with localization. We use the SDAP code developed in the team (https://sourceforge.net/projects/sequoia-dap/). In a first step before the assimilation of real observations, we set up an Ensemble twin experiment protocol where a nature run as well as noisy pseudo-observations of SST and SSH are generated from an Ensemble member (later discarded from the assimilative Ensemble). Our objectives are to assess (1) the adequacy of the choice of error source and perturbation strategy and (2) how effective the surface observational constraint is at constraining the surface and subsurface fields. We first illustrate characteristics of the error subspace generated by the perturbation strategy. We then show that, while the EnKF solves a single seamless problem regardless of the region within our domain, the nature and effectiveness of the data constraint over the shelf differ from those over the abyssal plain.

Mapping the nonstationary internal tide with satellite altimetry

NASA Astrophysics Data System (ADS)

Zaron, Edward D.

2017-01-01

Temporal variability of the internal tide has been inferred from the 23 year long combined records of the TOPEX/Poseidon, Jason-1, and Jason-2 satellite altimeters by combining harmonic analysis with an analysis of along-track wavenumber spectra of sea-surface height (SSH). Conventional harmonic analysis is first applied to estimate and remove the stationary components of the tide at each point along the reference ground tracks. The wavenumber spectrum of the residual SSH is then computed, and the variance in a neighborhood around the wavenumber of the mode-1 baroclinic M2 tide is interpreted as the sum of noise, broadband nontidal processes, and the nonstationary tide. At many sites a bump in the spectrum associated with the internal tide is noted, and an empirical model for the noise and nontidal processes is used to estimate the nonstationary semidiurnal tidal variance. The results indicate a spatially inhomogeneous pattern of tidal variability. Nonstationary tides are larger than stationary tides throughout much of the equatorial Pacific and Indian Oceans.

Climate and cholera in KwaZulu-Natal, South Africa: the role of environmental factors and implications for epidemic preparedness.

PubMed

Mendelsohn, Joshua; Dawson, Terry

2008-03-01

A cholera epidemic that took place in KwaZulu-Natal, South Africa (2000-2001) was employed to investigate the impact of climatic and environmental drivers on cholera dynamics. Precipitation (PRE), sea surface temperature (SST) and chlorophyll-a (CHL-a) data acquired from publicly available satellite and ground measurements were analysed together with disease incidence in an effort to assess the environmental contribution to the outbreak. SST (r(2)=0.749, lag=0 months) and PRE (r(2)=0.744, lag=2 months) showed strong associations with incidence. CHL-a showed a moderately strong (r(2)=0.656, lag=6 months) association with incidence while sea surface height (SSH) demonstrated a weak relationship with incidence (r(2)=0.326, lag=5 months). Our analysis tentatively supports a coastal transmission hypothesis, heavily influenced by localized PRE extremes. The role of SSH is likely attenuated by local coastal topography. Future work should clarify the mechanism linking coastal cholera reservoirs and the regional climate system to outbreaks in this region. Finally, we discuss benefits of further research in this area using extended remotely sensed and epidemiological datasets towards the development of early-warning systems and enhanced epidemic preparedness.

Using a dynamical advection to reconstruct a part of the SSH evolution in the context of SWOT, application to the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Rogé, Marine; Morrow, Rosemary; Ubelmann, Clément; Dibarboure, Gérald

2017-08-01

The main oceanographic objective of the future SWOT mission is to better characterize the ocean mesoscale and sub-mesoscale circulation, by observing a finer range of ocean topography dynamics down to 20 km wavelength. Despite the very high spatial resolution of the future satellite, it will not capture the time evolution of the shorter mesoscale signals, such as the formation and evolution of small eddies. SWOT will have an exact repeat cycle of 21 days, with near repeats around 5-10 days, depending on the latitude. Here, we investigate a technique to reconstruct the missing 2D SSH signal in the time between two satellite revisits. We use the dynamical interpolation (DI) technique developed by Ubelmann et al. (2015). Based on potential vorticity (hereafter PV) conservation using a one and a half layer quasi-geostrophic model, it features an active advection of the SSH field. This model has been tested in energetic open ocean regions such as the Gulf Stream and the Californian Current, and has given promising results. Here, we test this model in the Western Mediterranean Sea, a lower energy region with complex small scale physics, and compare the SSH reconstruction with the high-resolution Symphonie model. We investigate an extension of the simple dynamical model including a separated mean circulation. We find that the DI gives a 16-18% improvement in the reconstruction of the surface height and eddy kinetic energy fields, compared with a simple linear interpolation, and a 37% improvement in the Northern Current subregion. Reconstruction errors are higher during winter and autumn but statistically, the improvement from the DI is also better for these seasons.

Using altimetry to help explain patchy changes in hydrographic carbon measurements

NASA Astrophysics Data System (ADS)

Rodgers, Keith B.; Key, Robert M.; Gnanadesikan, Anand; Sarmiento, Jorge L.; Aumont, Olivier; Bopp, Laurent; Doney, Scott C.; Dunne, John P.; Glover, David M.; Ishida, Akio; Ishii, Masao; Jacobson, Andrew R.; Lo Monaco, Claire; Maier-Reimer, Ernst; Mercier, Herlé; Metzl, Nicolas; PéRez, Fiz F.; Rios, Aida F.; Wanninkhof, Rik; Wetzel, Patrick; Winn, Christopher D.; Yamanaka, Yasuhiro

2009-09-01

Here we use observations and ocean models to identify mechanisms driving large seasonal to interannual variations in dissolved inorganic carbon (DIC) and dissolved oxygen (O2) in the upper ocean. We begin with observations linking variations in upper ocean DIC and O2 inventories with changes in the physical state of the ocean. Models are subsequently used to address the extent to which the relationships derived from short-timescale (6 months to 2 years) repeat measurements are representative of variations over larger spatial and temporal scales. The main new result is that convergence and divergence (column stretching) attributed to baroclinic Rossby waves can make a first-order contribution to DIC and O2 variability in the upper ocean. This results in a close correspondence between natural variations in DIC and O2 column inventory variations and sea surface height (SSH) variations over much of the ocean. Oceanic Rossby wave activity is an intrinsic part of the natural variability in the climate system and is elevated even in the absence of significant interannual variability in climate mode indices. The close correspondence between SSH and both DIC and O2 column inventories for many regions suggests that SSH changes (inferred from satellite altimetry) may prove useful in reducing uncertainty in separating natural and anthropogenic DIC signals (using measurements from Climate Variability and Predictability's CO2/Repeat Hydrography program).

Real-Time Eddy-Resolving Ocean Prediction in the Caribbean

NASA Astrophysics Data System (ADS)

Hurlburt, H. E.; Smedstad, O. M.; Shriver, J. F.; Townsend, T. L.; Murphy, S. J.

2001-12-01

A {1/16}o eddy-resolving, nearly global ocean prediction system has been developed by the Naval Research Laboratory (NRL), Stennis Space Center, MS. It has been run in real-time by the Naval Oceanographic Office (NAVO), Stennis Space Center, MS since 18 Oct 2000 with daily updates for the nowcast and 30-day forecasts performed every Wednesday. The model has ~8 km resolution in the Caribbean region and assimilates real-time altimeter sea surface height (SSH) data from ERS-2, GFO and TOPEX/POSEIDON plus multi-channel sea surface temperature (MCSST) from satellite IR. Real-time and archived results from the system can be seen at web site: http://www7320.nrlssc.navy.mil/global\

The Potentials Of Gnss-R For Sea Hazard Monitoring

NASA Astrophysics Data System (ADS)

Clarizia, Maria Paola; Toffoli, Alessandro

2013-04-01

GNSS-Reflectometry represents a new and innovative approach for ocean remote sensing. This technique exploits signals of opportunity from GNSS constellations (i.e. GPS, Glonass, Galileo etc.), reflected off the surface of the ocean, and uses these reflections to retrieve useful geophysical parameters of the ocean surface. GNSS-R is generating an increasing attention from the Remote Sensing community, especially in recent years, due to its numerous advantages compared to other classical remote sensing techniques. The exploitation of long-term, ubiquitous signals of opportunity freely available, the high space-time sampling capabilities and the ability of its L-band signals to penetrate well through rain all contribute to make this technique very attractive. An additional and very important strength of GNSS-R is the need for simple, low-cost/low-power GNSS receivers, that could be easily piggybacked on other satellites to form a constellation of receivers. These recognized potentials of GNSS-R have been recently led to the approval of the NASA EV-2 Cyclone Global Navigation Satellite System (CYGNSS), a spaceborne mission focused on tropical cyclone (TC) inner core process studies. GNSS-R can be used for both scatterometric applications (i.e. wind and wave monitoring) and altimetric applications (i.e. measurements of sea surface height). In particular, its ability to collect multiple GPS reflections anywhere on the globe and at any time (due to the ubiquity of GPS signals) using a large constellation of simple GNSS receivers, makes is very suitable for Real-Time (RT) and Near-Real Time (NRT) applications. These are particularly crucial for monitoring sea hazards related to ship operations and operational oceanography in general. For scatterometric purposes, GNSS-R can potentially detect high wind and waves in RT and NRT, as well as oil spills on the surface of the ocean, through its measurements of the sea surface roughness. In addition to that, GNSS-R could provide densely spaced Sea Surface Height (SSH) measurements, by collecting a number of reflections from different satellites within a field point of view. A number of sea hazards like tsunamis, high tides, storm surges of simply very high solitary waves in the ocean can be easily detected with GNSS-R measurements of SSH. The precision in the SSH measurement that can be achieved with GNSS-R is still considerably lower than that obtained with operational conventional altimetry. For this reason, GNSS-R is currently more suitable to detect large waves, since they generate a large signal in the data that allows for a better detection. The increase in the number of GNSS constellations and signals, and the improvements that the new signals will have (larger bandwidth, longer codes etc.) should ultimately lead to an overcome of the current limitations of GNSS for sea surface altimetry applications.

Internal gravity wave contributions to global sea surface variability

NASA Astrophysics Data System (ADS)

Savage, A.; Arbic, B. K.; Richman, J. G.; Shriver, J. F.; Buijsman, M. C.; Zamudio, L.; Wallcraft, A. J.; Sharma, H.

2016-02-01

High-resolution (1/12th and 1/25th degree) 41-layer simulations of the HYbrid Coordinate Ocean Model (HYCOM), forced by both atmospheric fields and the astronomical tidal potential, are used to construct global maps of sea-surface height (SSH). The HYCOM output has been separated into steric, non-steric, and total sea-surface height and the maps display variance in subtidal, tidal, and supertidal bands. Two of the global maps are of particular interest in planning for the upcoming Surface Water and Ocean Topography (SWOT) wide-swath satellite altimeter mission; (1) a map of the nonstationary tidal signal (estimated after removing the stationary tidal signal via harmonic analysis), and (2) a map of the steric supertidal contributions, which are dominated by the internal gravity wave continuum. Both of these maps display signals of order 1 cm2, the target accuracy for the SWOT mission. Therefore, both non-stationary internal tides and non-tidal internal gravity waves are likely to be important sources of "noise" that must be accurately removed before examination of lower-frequency phenomena can take place.

Comparison of Two Global Ocean Reanalyses, NRL Global Ocean Forecast System (GOFS) and U. Maryland Simple Ocean Data Assimilation (SODA)

NASA Astrophysics Data System (ADS)

Richman, J. G.; Shriver, J. F.; Metzger, E. J.; Hogan, P. J.; Smedstad, O. M.

2017-12-01

The Oceanography Division of the Naval Research Laboratory recently completed a 23-year (1993-2015) coupled ocean-sea ice reanalysis forced by NCEP CFS reanalysis fluxes. The reanalysis uses the Global Ocean Forecast System (GOFS) framework of the HYbrid Coordinate Ocean Model (HYCOM) and the Los Alamos Community Ice CodE (CICE) and the Navy Coupled Ocean Data Assimilation 3D Var system (NCODA). The ocean model has 41 layers and an equatorial resolution of 0.08° (8.8 km) on a tri-polar grid with the sea ice model on the same grid that reduces to 3.5 km at the North Pole. Sea surface temperature (SST), sea surface height (SSH) and temperature-salinity profile data are assimilated into the ocean every day. The SSH anomalies are converted into synthetic profiles of temperature and salinity prior to assimilation. Incremental analysis updating of geostrophically balanced increments is performed over a 6-hour insertion window. Sea ice concentration is assimilated into the sea ice model every day. Following the lead of the Ocean Reanalysis Intercomparison Project (ORA-IP), the monthly mean upper ocean heat and salt content from the surface to 300 m, 700m and 1500 m, the mixed layer depth, the depth of the 20°C isotherm, the steric sea surface height and the Atlantic Meridional Overturning Circulation for the GOFS reanalysis and the Simple Ocean Data Assimilation (SODA 3.3.1) eddy-permitting reanalysis have been compared on a global uniform 0.5° grid. The differences between the two ocean reanalyses in heat and salt content increase with increasing integration depth. Globally, GOFS trends to be colder than SODA at all depth. Warming trends are observed at all depths over the 23 year period. The correlation of the upper ocean heat content is significant above 700 m. Prior to 2004, differences in the data assimilated lead to larger biases. The GOFS reanalysis assimilates SSH as profile data, while SODA doesn't. Large differences are found in the Western Boundary Currents, Southern Ocean and equatorial regions. In the Indian Ocean, the Equatorial Counter Current extends to far to the east and the subsurface flow in the thermocline is too weak in GOFS. The 20°C isotherm is biased 2 m shallow in SODA compared to GOFS, but the monthly anomalies in the depth are highly correlated.

Multi-model Ensemble of Ocean Data Assimilation Products in The Northwestern Pacific and Their Quality Assessment

NASA Astrophysics Data System (ADS)

Isoguchi, O.; Matsui, K.; Kamachi, M.; Usui, N.; Miyazawa, Y.; Ishikawa, Y.; Hirose, N.

2017-12-01

Several operational ocean assimilation models are currently available for the Northwestern Pacific and surrounding marginal seas. One of the main targets is predicting the Kuroshio/Kuroshio Extension, which have an impact not only on social activities, such as fishery and ship routing, but also on local weather. There is a demand to assess their quality comprehensively and make the best out the available products. In the present study, several ocean data assimilation products and their multi-ensemble product were assessed by comparing with satellite-derived sea surface temperature (SST), sea surface height (SSH), and in-situ hydrographic sections. The Kuroshio axes were also computed from the surface currents of these products and were compared with the Kuroshio Axis data produced analyzing satellite-SST, SSH, and in-situ observations by Marine Information Research Center (MIRC). The multi-model ensemble products generally showed the best accuracy in terms of the comparisons with the satellite-derived SST and SSH. On the other hand, the ensemble products didn't result in the best one in the comparison with the hydrographic sections. It is thus suggested that the multi-model ensemble works efficiently for the horizontally 2D parameters for which each assimilation product tends to have random errors while it does not work well for the vertical 2D comparisons for which it tends to have bias errors with respect to in-situ data. In the assessment with the Kuroshio Axis Data, some products showed more energetic behavior than the Kuroshio Axis data, resulting in the large path errors which are defined as a ratio between an area surrounded by the reference and model-derived ones and a path length. It is however not determined which are real, because in-situ observations are still lacking to resolve energetic Kuroshio behavior even though the Kuroshio is one of the strongest current.

Mesoscale dynamics in the Lofoten Basin - a sub-Arctic "hot spot" of oceanic variability

NASA Astrophysics Data System (ADS)

Volkov, D. L.; Belonenko, T. V.; Foux, V. R.

2012-12-01

A sub-Arctic "hot spot" of intense mesoscale variability is observed in the Lofoten Basin (LB) - a topographic depression with a maximum depth of about 3250 m, located in the Norwegian Sea. The standard deviation of sea surface height (SSH), measured with satellite altimetry, reaches nearly 15 cm in the center of the basin (Figure 1a). Using a space-time lagged correlation analysis of altimetry data, we discover a cyclonic propagation of the mesoscale SSH anomalies around the center of the LB with time-averaged phase speeds of 2-4 km/day, strongly linked to bottom topography (Figure 1c). The fact that surface drifter trajectories do not exhibit cyclonic circulation in the LB (Figure 1b) suggests that, at least in the upper ocean, satellite altimetry observes only the propagation of form without the corresponding transfer of mass. Linearly propagating wavelike disturbances that do not trap fluid inside are related to planetary or Rossby waves. Variations in topography may lead to the concentration of wave energy in certain regions or wave trapping. The dispersion analysis suggests that the observed wavelike cyclonic propagation of SSH anomalies in the LB is the manifestation of baroclinic topographic Rossby waves, that we term "the basin waves" in order to distinguish them from the other types of topographic waves, such as shelf or trench waves. We identify two modes of basin waves in the LB: a di-pole mode and a quadri-pole mode. The wavelength of each mode is about 500 km. The frequency of these modes is not constant and the phase speed varies from about 2 to 8 km/day. We show that the cyclonically rotating basin waves are responsible for the observed amplification of SSH variability in the LB. Because the baroclinic basin waves in the LB are probably associated with large vertical displacements of the thermocline and due to possible wave breaking events, they can play an important role in the mixing of the inflowing Atlantic Water with ambient water masses.(a) Standard deviation of SSH (cm) in the Nordic seas. Bottom topography is shown by 1000, 2000, and 3000 m isobaths. Abbreviations: GB - Greenland Basin, LB - Lofoten Basin, NB - Norwegian Basin, NwAC - Norwegian Atlantic Current, VP - Vøring Plateau. The study region is bounded by the blue rectangle. (b) Trajectories of 100 surface drifters (blue curves) that were present in the study region from September 1996 to August 2010 and their geostrophic velocity vectors (red arrows) averaged over 1°×0.25° (longitude × latitude) bins. (c) MDT_CNES_CLS09 mean dynamic topography (color, cm) and the velocities of eddy propagation (arrows). Two ellipsoidal contours, along which the dispersion relation was analyzed, are shown.

Altimeter‐derived seasonal circulation on the southwest Atlantic shelf: 27°–43°S

PubMed Central

James, Corinne; Combes, Vincent; Matano, Ricardo P.; Piola, Alberto R.; Palma, Elbio D.; Saraceno, Martin; Guerrero, Raul A.; Fenco, Harold; Ruiz‐Etcheverry, Laura A.

2015-01-01

Abstract Altimeter sea surface height (SSH) fields are analyzed to define and discuss the seasonal circulation over the wide continental shelf in the SW Atlantic Ocean (27°–43°S) during 2001–2012. Seasonal variability is low south of the Rio de la Plata (RdlP), where winds and currents remain equatorward for most of the year. Winds and currents in the central and northern parts of our domain are also equatorward during autumn and winter but reverse to become poleward during spring and summer. Transports of shelf water to the deep ocean are strongest during summer offshore and to the southeast of the RdlP. Details of the flow are discussed using mean monthly seasonal cycles of winds, heights, and currents, along with analyses of Empirical Orthogonal Functions. Principle Estimator Patterns bring out the patterns of wind forcing and ocean response. The largest part of the seasonal variability in SSH signals is due to changes in the wind forcing (described above) and changes in the strong boundary currents that flow along the eastern boundary of the shelf. The rest of the variability contains a smaller component due to heating and expansion of the water column, concentrated in the southern part of the region next to the coast. Our results compare well to previous studies using in situ data and to results from realistic numerical models of the regional circulation. PMID:27656332

High rate GPS positioning , JASON altimetry and marine gravimetry : monitoring the Antarctic Circumpolar Current (ACC) through the DRAKE campaigns.

NASA Astrophysics Data System (ADS)

Melachroinos, S. A.; Biancale, R.; Menard, Y.; Sarrailh, M.

2008-12-01

The Drake campaign which took place from Jan 14, 2006 - 08 Feb, 2006 has been a very successful mission in collecting a wide range of GPS and marine gravity data all along JASON altimetry ground track n° 104. The same campaign will be repeated in 2009 along 028 and 104 JASON-2 ground track. The Drake Passage (DP) chokepoint is not only well suited geographically, as the Antarctic Circumpolar Current (ACC) is constricted to its narrowest extent of 700 km, but observations and models suggest that dynamical balances are particular effective in this area. Furthermore the space geodesy observations and their products provided from several altimetry missions (currently operating ENVISAT, JASON 1 and 2, GFO, ERS and other plannified for the future such as Altika, SWOT) require the cross comparison with independent geodetic techniques at the DP. The current experiment comprises a kinematic GPS and marine gravimetry Cal/Val geodetic approach and it aims to : validate with respect to altimetry data and surface models such a kinematic high frequency GPS technique for measuring sea state and sea surface height (SSH), compare the GPS SSH profiles with altimetry mean dynamic topography (MDT) and mean sea surface (MSS) models, give recommendations for future "offshore" Cal/Val activities on the ground tracks of altimeter satellites such as JASON-2, GFO, Altika using the GNSS technology etc. The GPS observations are collected from GPS antennas installed on a wave-rider buoy , aboard the R/V "Polarstern" and from continuous geodetic reference stations in the proximity. We also analyse problems related to the ship's attitude variations in roll, pitch and yaw and a way to correct them. We also give emphasis on the impact of the ship's acceleration profiles on the so called "squat effect" and ways to deal with it. The project will in particular benefit the GOCE mission by proposing to integrate GOCE in the ocean circulation study and validate GOCE products with our independent geodetic data set. The high rate GPS SSH solutions are derived using two different GPS kinematic software, GINS (CNES) and TRACK (MIT).

Ocean Wave Studies with Applications to Ocean Modeling and Improvement of Satellite Altimeter Measurements

NASA Technical Reports Server (NTRS)

Glazman, Roman E.

1999-01-01

Combining analysis of satellite data (altimeter, scatterometer, high-resolution visible and infrared images, etc.) with mathematical modeling of non-linear wave processes, we investigate various ocean wave fields (on scales from capillary to planetary), their role in ocean dynamics and turbulent transport (of heat and biogeochemical quantities), and their effects on satellite altimeter measuring accuracy. In 1998 my attention was focused on long internal gravity waves (10 to 1000 km), known also as baroclinic inertia-gravity (BIG) waves. We found these waves to be a major factor of altimeter measurements "noise," resulting in a greater uncertainty [up to 10 cm in terms of sea surface height (SSH) amplitude] in the measured SSH signal than that caused by the sea state bias variations (up to 5 cm or so). This effect still remains largely overlooked by the satellite altimeter community. Our studies of BIG waves address not only their influence on altimeter measurements but also their role in global ocean dynamics and in transport and turbulent diffusion of biogeochemical quantities. In particular, in collaboration with Prof Peter Weichman, Caltech, we developed a theory of turbulent diffusion caused by wave motions of most general nature. Applied to the problem of horizontal turbulent diffusion in the ocean, the theory yielded the effective diffusion coefficient as a function of BIG wave parameters obtainable from satellite altimeter data. This effort, begun in 1997, has been successfully completed in 1998. We also developed a theory that relates spatial fluctuations of scalar fields (such as sea surface temperature, chlorophyll concentration, drifting ice concentration, etc.) to statistical characteristics of BIG waves obtainable from altimeter measurements. A manuscript is in the final stages of preparation. In order to verify the theoretical predictions and apply them to observations, we are now analyzing Sea-viewing Wide Field of view Sensor (SeaWiFS) and Field of view Sensor (SeaWiFS) and Advanced Very High-Resolution Radiometer (AVHRR) data on sea surface temperature (SST) and chlorophyll concentration jointly with TOPEX/POSEIDON data on SSH variations.

A Preliminary Assessment of the S-3A SRAL Performances in SAR Mode

NASA Astrophysics Data System (ADS)

Dinardo, Salvatore; Scharroo, Remko; Bonekamp, Hans; Lucas, Bruno; Loddo, Carolina; Benveniste, Jerome

2016-08-01

The present work aims to assess and characterize the S3-A SRAL Altimeter performance in closed-loop tracking mode and in open ocean conditions. We have processed the Sentinel-3 SAR data products from L0 until L2 using an adaptation of the ESRIN GPOD CryoSat-2 Processor SARvatore.During the Delay-Doppler processing, we have chosen to activate the range zero-padding option.The L2 altimetric geophysical parameters, that are to be validated, are the sea surface height above the ellipsoid (SSH), sea level anomaly (SLA), the significant wave height (SWH) and wind speed (U10), all estimated at 20 Hz.The orbit files are the POD MOE, while the geo- corrections are extracted from the RADS database.In order to assess the accuracy of the wave&wind products, we have been using an ocean wave&wind speed model output (wind speed at 10 meter high above the sea surface) from the ECMWF.We have made a first order approximation of the sea state bias as -4.7% of the SWH.In order to assess the precision performance of SRAL SAR mode, we compute the level of instrumental noise (range, wave height and wind speed) for different conditions of sea state.

Sea surface height and dynamic topography of the ice-covered oceans from CryoSat-2: 2011-2014

NASA Astrophysics Data System (ADS)

Kwok, Ron; Morison, James

2016-01-01

We examine 4 years (2011-2014) of sea surface heights (SSH) from CryoSat-2 (CS-2) over the ice-covered Arctic and Southern Oceans. Results are from a procedure that identifies and determines the heights of sea surface returns. Along 25 km segments of satellite ground tracks, variability in the retrieved SSHs is between ˜2 and 3 cm (standard deviation) in the Arctic and is slightly higher (˜3 cm) in the summer and the Southern Ocean. Average sea surface tilts (along these 25 km segments) are 0.01 ± 3.8 cm/10 km in the Arctic, and slightly lower (0.01 ± 2.0 cm/10 km) in the Southern Ocean. Intra-seasonal variability of CS-2 dynamic ocean topography (DOT) in the ice-covered Arctic is nearly twice as high as that of the Southern Ocean. In the Arctic, we find a correlation of 0.92 between 3 years of DOT and dynamic heights (DH) from hydrographic stations. Further, correlation of 4 years of area-averaged CS-2 DOT near the North Pole with time-variable ocean-bottom pressure from a pressure gauge and from GRACE, yields coefficients of 0.83 and 0.77, with corresponding differences of <3 cm (RMS). These comparisons contrast the length scale of baroclinic and barotropic features and reveal the smaller amplitude barotropic signals in the Arctic Ocean. Broadly, the mean DOT from CS-2 for both poles compares well with those from the ICESat campaigns and the DOT2008A and DTU13MDT fields. Short length scale topographic variations, due to oceanographic signals and geoid residuals, are especially prominent in the Arctic Basin but less so in the Southern Ocean.

The Effect of Ocean Currents on Sea Surface Temperature Anomalies

NASA Technical Reports Server (NTRS)

Stammer, Detlef; Leeuwenburgh, Olwijn

2000-01-01

We investigate regional and global-scale correlations between observed anomalies in sea surface temperature and height. A strong agreement between the two fields is found over a broad range of latitudes for different ocean basins. Both time-longitude plots and wavenumber-frequency spectra suggest an advective forcing of SST anomalies by a first-mode baroclinic wave field on spatial scales down to 400 km and time scales as short as 1 month. Even though the magnitude of the mean background temperature gradient is determining for the effectiveness of the forcing, there is no obvious seasonality that can be detected in the amplitudes of SST anomalies. Instead, individual wave signatures in the SST can in some cases be followed over periods of two years. The phase relationship between SST and SSH anomalies is dependent upon frequency and wavenumber and displays a clear decrease of the phase lag toward higher latitudes where the two fields come into phase at low frequencies. Estimates of the damping coefficient are larger than generally obtained for a purely atmospheric feedback. From a global frequency spectrum a damping time scale of 2-3 month was found. Regionally results are very variable and range from 1 month near strong currents to 10 month at low latitudes and in the sub-polar North Atlantic. Strong agreement is found between the first global EOF modes of 10 day averaged and spatially smoothed SST and SSH grids. The accompanying time series display low frequency oscillations in both fields.

Corsica: A Multi-Mission Absolute Calibration Site

NASA Astrophysics Data System (ADS)

Bonnefond, P.; Exertier, P.; Laurain, O.; Guinle, T.; Femenias, P.

2013-09-01

In collaboration with the CNES and NASA oceanographic projects (TOPEX/Poseidon and Jason), the OCA (Observatoire de la Côte d'Azur) developed a verification site in Corsica since 1996, operational since 1998. CALibration/VALidation embraces a wide variety of activities, ranging from the interpretation of information from internal-calibration modes of the sensors to validation of the fully corrected estimates of the reflector heights using in situ data. Now, Corsica is, like the Harvest platform (NASA side) [14], an operating calibration site able to support a continuous monitoring with a high level of accuracy: a 'point calibration' which yields instantaneous bias estimates with a 10-day repeatability of 30 mm (standard deviation) and mean errors of 4 mm (standard error). For a 35-day repeatability (ERS, Envisat), due to a smaller time series, the standard error is about the double ( 7 mm).In this paper, we will present updated results of the absolute Sea Surface Height (SSH) biases for TOPEX/Poseidon (T/P), Jason-1, Jason-2, ERS-2 and Envisat.

Deep Ocean Warming Assessed from Altimeters, GRACE, 3 In-situ Measurements, and a Non-Boussinesq OGCM

NASA Technical Reports Server (NTRS)

Song, Y. Tony; Colberg, Frank

2011-01-01

Observational surveys have shown significant oceanic bottom water warming, but they are too spatially and temporally sporadic to quantify the deep ocean contribution to the present-day sea level rise (SLR). In this study, altimetry sea surface height (SSH), Gravity Recovery and Climate Experiment (GRACE) ocean mass, and in situ upper ocean (0-700 m) steric height have been assessed for their seasonal variability and trend maps. It is shown that neither the global mean nor the regional trends of altimetry SLR can be explained by the upper ocean steric height plus the GRACE ocean mass. A non-Boussinesq ocean general circulation model (OGCM), allowing the sea level to rise as a direct response to the heat added into the ocean, is then used to diagnose the deep ocean steric height. Constrained by sea surface temperature data and the top of atmosphere (TOA) radiation measurements, the model reproduces the observed upper ocean heat content well. Combining the modeled deep ocean steric height with observational upper ocean data gives the full depth steric height. Adding a GRACE-estimated mass trend, the data-model combination explains not only the altimetry global mean SLR but also its regional trends fairly well. The deep ocean warming is mostly prevalent in the Atlantic and Indian oceans, and along the Antarctic Circumpolar Current, suggesting a strong relation to the oceanic circulation and dynamics. Its comparison with available bottom water measurements shows reasonably good agreement, indicating that deep ocean warming below 700 m might have contributed 1.1 mm/yr to the global mean SLR or one-third of the altimeter-observed rate of 3.11 +/- 0.6 mm/yr over 1993-2008.

A comparison of sea surface salinity in the equatorial Pacific Ocean during the 1997-1998, 2012-2013, and 2014-2015 ENSO events

NASA Astrophysics Data System (ADS)

Corbett, Caroline M.; Subrahmanyam, Bulusu; Giese, Benjamin S.

2017-11-01

Sea surface salinity (SSS) variability during the 1997-1998 El Niño event and the failed 2012-2013 and 2014-2015 El Niño events is explored using a combination of observations and ocean reanalyses. Previously, studies have mainly focused on the sea surface temperature (SST) and sea surface height (SSH) variability. This analysis utilizes salinity data from Argo and the Simple Ocean Data Assimilation (SODA) reanalysis to examine the SSS variability. Advective processes and evaporation minus precipitation (E-P) variability is understood to influence SSS variability. Using surface wind, surface current, evaporation, and precipitation data, we analyze the causes for the observed SSS variability during each event. Barrier layer thickness and upper level salt content are also examined in connection to subsurface salinity variability. Both advective processes and E-P variability are important during the generation and onset of a successful El Niño, while a lack of one or both of these processes leads to a failed ENSO event.

Modeling Monthly Spatial Distribution of Ommastrephes bartramii CPUE in the Northwest Pacific and Its Spatially Nonstationary Relationships with the Marine Environment

NASA Astrophysics Data System (ADS)

Feng, Yongjiu; Liu, Yang; Chen, Xinjun

2018-06-01

There are substantial spatial variations in the relationships between catch-per-unit-effort (CPUE) and oceanographic conditions with respect to pelagic species. This study examines the monthly spatiotemporal distribution of CPUE of the neon flying squid, Ommastrephes bartramii, in the Northwest Pacific from July to November during 2004-2013, and analyzes the relationships with oceanographic conditions using a generalized additive model (GAM) and geographically weighted regression (GWR) model. The results show that most of the squids were harvested in waters with sea surface temperature (SST) between 7.6 and 24.6°C, chlorophyll- a (Chl- a) concentration below 1.0 mg m-3, sea surface salinity (SSS) between 32.7 and 34.6, and sea surface height (SSH) between -12.8 and 28.4 cm. The monthly spatial distribution patterns of O. bartramii predicted using GAM and GWR models are similar to observed patterns for all months. There are notable variations in the local coefficients of GWR, indicating the presence of spatial non-stationarity in the relationship between O. bartramii CPUE and oceanographic conditions. The statistical results show that there were nearly equal positive and negative coefficients for Chl- a, more positive than negative coefficients for SST, and more negative than positive coefficients for SSS and SSH. The overall accuracies of the hot spots predicted by GWR exceed 60% (except for October), indicating a good performance of this model and its improvement over GAM. Our study provides a better understanding of the ecological dynamics of O. bartramii CPUE and makes it possible to use GWR to study the spatially nonstationary characteristics of other pelagic species.

Role of Western Hemisphere Warm Pool in Rapid Climate Changes over the Western North Pacific

NASA Astrophysics Data System (ADS)

Kug, Jong-Seong; Park, Jae-Heung; An, Soon-Il

2017-04-01

Oceanic states over the western North Pacific (WNP), which is surrounded by heavily populated countries, are closely tied to the lives of the people in East Asia in regards to both climate and socioeconomics. As global warming continues, remarkable increases in sea surface temperature (SST) and sea surface height (SSH) have been observed in the WNP in recent decades. Here, we show that the SST increase in the western hemisphere warm pool (WHWP), which is the second largest warm pool on the globe, has contributed considerably to the rapid surface warming and sea level rise in the WNP via its remote teleconnection along the Pacific Intertropical Convergence Zone (ITCZ). State-of-the-art climate models strongly support the role of the WHWP not only on interannual time sales but also in long-term climate projections. We expect that understanding the processes initiated by the WHWP-SST could permit better forecasts of western North Pacific climate and the further development of the socioeconomics of East Asia.

The Rise of GNSS Reflectometry for Earth Remote Sensing

NASA Technical Reports Server (NTRS)

Zuffada, Cinzia; Li, Zhijin; Nghiem, Son V.; Lowe, Steve; Shah, Rashmi; Clarizia, Maria Paola; Cardellach, Estel

2015-01-01

The Global Navigation Satellite System (GNSS) reflectometry, i.e. GNSS-R, is a novel remote-sensing technique first published in that uses GNSS signals reflected from the Earth's surface to infer its surface properties such as sea surface height (SSH), ocean winds, sea-ice coverage, vegetation, wetlands and soil moisture, to name a few. This communication discusses the scientific value of GNSS-R to (a) furthering our understanding of ocean mesoscale circulation toward scales finer than those that existing nadir altimeters can resolve, and (b) mapping vegetated wetlands, an emerging application that might open up new avenues to map and monitor the planet's wetlands for methane emission assessments. Such applications are expected to be demonstrated by the availability of data from GEROS-ISS, an ESA experiment currently in phase A, and CyGNSS [3], a NASA mission currently in development. In particular, the paper details the expected error characteristics and the role of filtering played in the assimilation of these data to reduce the altimetric error (when averaging many measurements).

Mapping distribution of Rastrelliger kanagurta in the exclusive economic zone (EEZ) of Malaysia using maximum entropy modeling approach

NASA Astrophysics Data System (ADS)

Yusop, Syazwani Mohd; Mustapha, Muzzneena Ahmad

2018-04-01

The coupling of fishing locations for R. kanagurta obtained from SEAFDEC and multi-sensor satellite imageries of oceanographic variables; sea surface temperature (SST), sea surface height (SSH) and chl-a concentration (chl-a) were utilized to evaluate the performance of maximum entropy (MaxEnt) models for R. kanagurta fishing ground for prediction. Besides, this study was conducted to identify the relative percentage contribution of each environmental variable considered in order to describe the effects of the oceanographic factors on the species distribution in the study area. The potential fishing grounds during intermonsoon periods; April and October 2008-2009 were simulated separately and covered the near-coast of Kelantan, Terengganu, Pahang and Johor. The oceanographic conditions differed between regions by the inherent seasonal variability. The seasonal and spatial extents of potential fishing grounds were largely explained by chl-a concentration (0.21-0.99 mg/m3 in April and 0.28-1.00 mg/m3 in October), SSH (77.37-85.90 cm in April and 107.60-108.97 cm in October) and SST (30.43-33.70 °C in April and 30.48-30.97 °C in October). The constructed models were applicable and therefore they were suitable for predicting the potential fishing zones of R. kanagurta in EEZ. The results from this study revealed MaxEnt's potential for predicting the spatial distribution of R. kanagurta and highlighted the use of multispectral satellite images for describing the seasonal potential fishing grounds.

Comparison of Measurements from Pressure-recording Inverted Echo Sounders and Satellite Altimetry in the North Equatorial Current Region of the Western Pacific

NASA Astrophysics Data System (ADS)

Jeon, Chanhyung; Park, Jae-Hun; Kim, Dong Guk; Kim, Eung; Jeon, Dongchull

2018-04-01

An array of 5 pressure-recording inverted echo sounders (PIESs) was deployed along the Jason-2 214 ground track in the North Equatorial Current (NEC) region of the western Pacific Ocean for about 2 years from June 2012. Round-trip acoustic travel time from the bottom to the sea surface and bottom pressure measurements from PIES were converted to sea level anomaly (SLA). AVISO along-track mono-mission SLA (Mono-SLA), reference mapped SLA (Ref-MSLA), and up-to-date mapped SLA (Upd-MSLA) products were used for comparison with PIESderived SLA (η tot). Comparisons of η tot with Mono-SLA revealed that hump artifact errors significantly contaminate the Mono-SLA. Differences of η tot from both Ref-MSLA and Upd-MSLA decreased as the hump errors were reduced in mapped SLA products. Comparisons of Mono-SLA measurements at crossover points of ground tracks near the observation sites revealed large differences though the time differences of their measurements were only 1.53 and 4.58 days. Comparisons between Mono-SLA and mapped SLA suggested that mapped SLA smooths out the hump artifact errors by taking values between the two discrepant Mono-SLA measurements at the crossover points. Consequently, mapped SLA showed better agreement with η tot at our observation sites. AVISO mapped sea surface height (SSH) products are the preferable dataset for studying SSH variability in the NEC region of the western Pacific, though some portions of hump artifact errors seem to still remain in them.

1/32° real-time global ocean prediction and value-added over 1/16° resolution

NASA Astrophysics Data System (ADS)

Shriver, J. F.; Hurlburt, H. E.; Smedstad, O. M.; Wallcraft, A. J.; Rhodes, R. C.

2007-03-01

A 1/32° global ocean nowcast/forecast system has been developed by the Naval Research Laboratory at the Stennis Space Center. It started running at the Naval Oceanographic Office in near real-time on 1 Nov. 2003 and has been running daily in real-time since 1 Mar. 2005. It became an operational system on 6 March 2006, replacing the existing 1/16° system which ceased operation on 12 March 2006. Both systems use the NRL Layered Ocean Model (NLOM) with assimilation of sea surface height from satellite altimeters and sea surface temperature from multi-channel satellite infrared radiometers. Real-time and archived results are available online at http://www.ocean.nrlssc.navy.mil/global_nlom. The 1/32° system has improvements over the earlier system that can be grouped into two categories: (1) better resolution and representation of dynamical processes and (2) design modifications. The design modifications are the result of accrued knowledge since the development of the earlier 1/16° system. The improved horizontal resolution of the 1/32° system has significant dynamical benefits which increase the ability of the model to accurately nowcast and skillfully forecast. At the finer resolution, current pathways and their transports become more accurate, the sea surface height (SSH) variability increases and becomes more realistic and even the global ocean circulation experiences some changes (including inter-basin exchange). These improvements make the 1/32° system a better dynamical interpolator of assimilated satellite altimeter track data, using a one-day model forecast as the first guess. The result is quantitatively more accurate nowcasts, as is illustrated by several model-data comparisons. Based on comparisons with ocean color imagery in the northwestern Arabian Sea and the Gulf of Oman, the 1/32° system has even demonstrated the ability to map small eddies, 25-75 km in diameter, with 70% reliability and a median eddy center location error of 22.5 km, a surprising and unanticipated result from assimilation of altimeter track data. For all of the eddies (50% small eddies), the reliability was 80% and the median eddy center location error was 29 km. The 1/32° system also exhibits improved forecast skill in relation to the 1/16° system. This is due to ( a) a more accurate initial condition for the forecast and ( b) better resolution and representation of critical dynamical processes (such as upper ocean - topographic coupling via mesoscale flow instabilities) which allow the model to more accurately evolve these features in time while running in forecast mode (forecast atmospheric forcing for the first 5 days, then gradually reverting toward climatology for the remainder of the 30-day forecast period). At 1/32° resolution, forecast SSH generally compares better with unassimilated observations and the anomaly correlation of the forecast SSH exceeds that from persistence by a larger amount than found in the 1/16° system.

A Study of the Southern Ocean: Mean State, Eddy Genesis & Demise, and Energy Pathways

NASA Astrophysics Data System (ADS)

Zajaczkovski, Uriel

The Southern Ocean (SO), due to its deep penetrating jets and eddies, is well-suited for studies that combine surface and sub-surface data. This thesis explores the use of Argo profiles and sea surface height ( SSH) altimeter data from a statistical point of view. A linear regression analysis of SSH and hydrographic data reveals that the altimeter can explain, on average, about 35% of the variance contained in the hydrographic fields and more than 95% if estimated locally. Correlation maxima are found at mid-depth, where dynamics are dominated by geostrophy. Near the surface, diabatic processes are significant, and the variance explained by the altimeter is lower. Since SSH variability is associated with eddies, the regression of SSH with temperature (T) and salinity (S) shows the relative importance of S vs T in controlling density anomalies. The AAIW salinity minimum separates two distinct regions; above the minimum density changes are dominated by T, while below the minimum S dominates over T. The regression analysis provides a method to remove eddy variability, effectively reducing the variance of the hydrographic fields. We use satellite altimetry and output from an assimilating numerical model to show that the SO has two distinct eddy motion regimes. North and south of the Antarctic Circumpolar Current (ACC), eddies propagate westward with a mean meridional drift directed poleward for cyclonic eddies (CEs) and equatorward for anticyclonic eddies (AEs). Eddies formed within the boundaries of the ACC have an effective eastward propagation with respect to the mean deep ACC flow, and the mean meridional drift is reversed, with warm-core AEs propagating poleward and cold-core CEs propagating equatorward. This circulation pattern drives downgradient eddy heat transport, which could potentially transport a significant fraction (24 to 60 x 1013 W) of the net poleward ACC eddy heat flux. We show that the generation of relatively large amplitude eddies is not a ubiquitous feature of the SO but rather a phenomenon that is constrained to five isolated, well-defined "hotspots". These hotspots are located downstream of major topographic features, with their boundaries closely following f/H contours. Eddies generated in these locations show no evidence of a bias in polarity and decay within the boundaries of the generation area. Eddies tend to disperse along f/H contours rather than following lines of latitude. We found enhanced values of both buoyancy (BP) and shear production (SP) inside the hotspots, with BP one order of magnitude larger than SP. This is consistent with baroclinic instability being the main mechanism of eddy generation. The mean potential density field estimated from Argo floats shows that inside the hotspots, isopycnal slopes are steep, indicating availability of potential energy. The hotspots identified in this thesis overlap with previously identified regions of standing meanders. We provide evidence that hotspot locations can be explained by the combined effect of topography, standing meanders that enhance baroclinic instability, and availability of potential energy to generate eddies via baroclinic instabilities.

Environmental studies of the Arabian Sea using remote sensing and GIS

NASA Astrophysics Data System (ADS)

Saxena, Ashlesha; Menezes, Andrew

2006-12-01

The Arabian Sea, situated in the western part of the northern Indian Ocean is a tropical basin. It is bounded on the east by the Indian peninsula, on the north by Baluchistan and Sindh provinces of Pakistan and on the west by the landmass of Arabia and Africa. The environmental factors that influence this tropical basin are the seasonally changing winds from the northeast during winter (November-February) and southwest during summer (June to September). Accordingly, the waters of the basin will experience seasonal variations. The study aims at understanding the seasonal and inter-annual variation of the Arabian Sea using satellite-derived data. The spatial domain selected for the present study is 40 degrees E and 78 degrees E longitude and equator to 30 degrees N. The remote sensing data with respect to sea surface temperature (SST), sea surface wind, sea surface height (SSH), and chlorophyll pigment concentration during January 2002 to December 2005 were used to understand the spatio-temporal variability of the Arabian Sea. The monthly mean SST data was obtained from Modis aqua, winds from Quikscat and chlorophyll pigment concentration from SeaWiFS. The SSH anomaly data was obtained from the merged product - Topex/Poseidon ERS 1/2 satellite which is 7-day snapshot. The spatial resolution of these data is 0.3 degrees latitude x 0.3 degrees longitude. Geographical information system (GIS) was used for processing and analysing the above parameters to determine the variability and detection of oceanic processes that are responsible for such variability.The study showed a very strong inverse correlation between SST and chlorophyll concentrations. Arabian Sea undergoes cooling during summer due to upwelling and advection, and in winter due to surface cooling under reduced solar heating. Upwelling along the coasts of Somalia, Arabia, and the west coast of India brings cold and nutrient rich sub-surface waters to the surface, which supports the observed high chlorophyll concentrations. During winter the convective mixing in the northern Arabian Sea supports high chlorophyll pigment concentrations. Due to strong solar heating, SST was warmest in spring (April), which supported least chlorophyll concentration.llite

Relationship between the Bering Strait Throughflow and Salinity in the Bering Sea in an Atmosphere-Ocean-Ice Coupled Model

NASA Astrophysics Data System (ADS)

Kawai, Y.; Osafune, S.; Masuda, S.; Komuro, Y.

2016-12-01

The relationship between the volumetric transport of the Bering Strait throughflow (BTF) and sea surface salinity (SSS) in the Bering Sea was investigated using an atmosphere-ocean-ice coupled model, MIROC4h, which includes an eddy-permitting ocean model. The MIROC4h simulated well the seasonal cycle of BTF transport, although it overestimated the transport compared with previous studies. The interannual variations of SSS in the Bering Sea were correlated with those of BTF transport: SSS in the northwestern Bering Sea was high when BTF transport was large. The SSS anomaly associated with the BTF anomaly became evident from late autumn to spring, and SSS lagged behind the BTF by a few months. The BTF transport was strongly correlated with the SSH in the eastern Bering Sea, the southwestern Chukchi Sea, and the East Siberian Sea. The low SSH along the Russian coast in the Arctic Ocean was uncorrelated with the high SSH in the Bering Sea. The Arctic SSH affected BTF transport and the SSS in the northwestern Bering Sea independently of the SSH in the Bering Sea. We evaluated the salt budget in the northwestern Bering Sea, including Anadyr Bay. When the BTF transport in October-March was large, the horizontal convergence of salt increased and sea-ice melting decreased; both changes contributed to the increase of salinity. In contrast, evaporation-minus-precipitation and the residual component had the opposite effect. The sea-ice retreat was closely related to meridional wind anomalies that also raised the SSH in the eastern Bering Sea. Changes in upper-layer currents caused by the southerly wind anomalies in the Bering Sea contributed to the increase of the horizontal convergence of salt. In addition, the SSH anomalies in the Arctic Ocean independently affected the currents in the Bering Strait and the northwestern Bering Sea, perhaps through the propagation of shelf waves, which also led to salinization.

Broadening our View of the MOC using Satellite Altimetry and Two Moored Arrays in the Atlantic: MOVE 16N and RAPID 26N

NASA Astrophysics Data System (ADS)

Duchez, A.; Frajka-Williams, E.; Lankhorst, M. J.; Koelling, J.; Send, U.

2016-02-01

The Atlantic meridional overturning circulation (MOC) carries heat northwards in the top 1000m of the Atlantic, with a deep, cold return flow below. Climate simulations predict a slowing of the AMOC in the coming years, while present day observations from boundary arrays demonstrate substantial variability on weekly- to interannual timescales. Using simultaneous observations from the MOVE 16N and RAPID 26N arrays in the Atlantic, we investigate transport and property variability. On long timescales, the tendencies in deep densities are similar between the two latitudes (towards lighter water in the west), resulting in a change in the thermal wind balance across the Atlantic. This tendency is punctuated by a more abrupt change in late 2009 at 26N and 7 months later at 16N. In situ arrays such as RAPID 26N and MOVE 16N provide detailed depth structure of transport variability, but are necessarily limited to individual latitudes. Using satellite altimetry, we show that the sea surface height (SSH) anomalies in the western half of the Atlantic covary with in situ transport estimates on interannual timescales. We use satellite altimetry to extend estimates of depth-integrated ocean transports back in time to 1993, then investigate how the spatial pattern of SSH variability broadens our view of Atlantic MOC structure beyond individual latitudes. This analysis investigates two decade+ long time series of ocean transports, and complements the findings with satellite observations.

Examining spatiotemporal distribution and CPUE-environment relationships for the jumbo flying squid Dosidicus gigas offshore Peru based on spatial autoregressive model

NASA Astrophysics Data System (ADS)

Feng, Yongjiu; Chen, Xinjun; Liu, Yang

2017-09-01

The spatiotemporal distribution and relationship between nominal catch-per-unit-effort (CPUE) and environment for the jumbo flying squid (Dosidicus gigas) were examined in offshore Peruvian waters during 2009-2013. Three typical oceanographic factors affecting the squid habitat were investigated in this research, including sea surface temperature (SST), sea surface salinity (SSS) and sea surface height (SSH). We studied the CPUE-environment relationships for D. gigas using a spatially-lagged version of spatial autoregressive (SAR) model and a generalized additive model (GAM), with the latter for auxiliary and comparative purposes. The annual fishery centroids were distributed broadly in an area bounded by 79.5°-82.7°W and 11.9°-17.1°S, while the monthly fishery centroids were spatially close and lay in a smaller area bounded by 81.0°-81.2°W and 14.3°-15.4°S. Our results show that the preferred environmental ranges for D. gigas offshore Peru were 20.9°-21.9°C for SST, 35.16-35.32 for SSS and 27.2-31.5 cm for SSH in the areas bounded by 78°-80°W/82-84°W and 15°-18°S. Monthly spatial distributions during October to December were predicted using the calibrated GAM and SAR models and general similarities were found between the observed and predicted patterns for the nominal CPUE of D. gigas. The overall accuracies for the hotspots generated by the SAR model were much higher than those produced by the GAM model for all three months. Our results contribute to a better understanding of the spatiotemporal distributions of D. gigas offshore Peru, and offer a new SAR modeling method for advancing fishery science.

Observational evidence of seasonality in the timing of loop current eddy separation

NASA Astrophysics Data System (ADS)

Hall, Cody A.; Leben, Robert R.

2016-12-01

Observational datasets, reports and analyses over the time period from 1978 through 1992 are reviewed to derive pre-altimetry Loop Current (LC) eddy separation dates. The reanalysis identified 20 separation events in the 15-year record. Separation dates are estimated to be accurate to approximately ± 1.5 months and sufficient to detect statistically significant LC eddy separation seasonality, which was not the case for previously published records because of the misidentification of separation events and their timing. The reanalysis indicates that previously reported LC eddy separation dates, determined for the time period before the advent of continuous altimetric monitoring in the early 1990s, are inaccurate because of extensive reliance on satellite sea surface temperature (SST) imagery. Automated LC tracking techniques are used to derive LC eddy separation dates in three different altimetry-based sea surface height (SSH) datasets over the time period from 1993 through 2012. A total of 28-30 LC eddy separation events were identified in the 20-year record. Variations in the number and dates of eddy separation events are attributed to the different mean sea surfaces and objective-analysis smoothing procedures used to produce the SSH datasets. Significance tests on various altimetry and pre-altimetry/altimetry combined date lists consistently show that the seasonal distribution of separation events is not uniform at the 95% confidence level. Randomization tests further show that the seasonal peak in LC eddy separation events in August and September is highly unlikely to have occurred by chance. The other seasonal peak in February and March is less significant, but possibly indicates two seasons of enhanced probability of eddy separation centered near the spring and fall equinoxes. This is further quantified by objectively dividing the seasonal distribution into two seasons using circular statistical techniques and a k-means clustering algorithm. The estimated spring and fall centers are March 2nd and August 23rd, respectively, with season boundaries in May and December.

Investigating the influence of sea level oscillations in the Danish Straits on the Baltic Sea dynamics

NASA Astrophysics Data System (ADS)

Tikhonova, Natalia; Gusev, Anatoly; Diansky, Nikolay; Zakharchuk, Evgeny

2016-04-01

In this research, we study the influence of dynamic processes in the Danish Straits on the sea surface height (SSH) oscillations in the Baltic Sea. For this purpose, we use the model of marine and oceanic circulation INMOM (Institute of Numerical Mathematics Ocean Model). The simulations were carried out for the period 2009-2010, and the coastal station data were used for verification of SSH modelling quality. Comparison of the simulated data with the ones measured in the coastal points showed us that the model does not describe SSH variability in different areas of the Baltic Sea well enough, so in the following simulation series the in situ SSH data of the coastal measurements were assimilated at the open boundary in the Danish Straits. The results of the new simulation showed us that this approach significantly increases the SSH simulation quality in all areas of the sea, where the comparison was made. In particular, the correlation coefficients between the simulated and measured SSH data increased from 0.21-0.73 to 0.81-0.90. On the basis of these results, it has been suggested that the Baltic Sea SSH variability is largely determined by the influence of the dynamic processes in the Danish Straits, which can be represented as a superposition of oscillations of different space-time scales. These oscillations can either be generated in the straits themselves, or propagate from the North Sea. For verification of this hypothesis and assessment of the oscillation propagation distance in the Baltic Sea, the following experiment was performed. At the open boundary in the Danish Straits, the six harmonics were set with the following parameters: the periods are 1.5, 3.0, 6.0, 13.5, 40.5, and 121.5 days, and the amplitude for all the harmonics is 50 cm. The results showed us that the prescribed harmonic oscillations at the open boundary propagate into all areas of the sea without changing the frequency, but with decreasing amplitude. The decrease in amplitude is not related to the distance between the measurement point and open boundary. For example, in the Gulfs of Finland and Riga, the 36hr harmonic has an amplitude substantially higher than in the open sea, and in the Stockholm area, this harmonic is at the noise level. The 40dy and 121dy harmonics have slightly lower amplitudes than the original prescribed signal, but they are almost unchanged while propagating further into the sea, and in all the investigated locations have almost identical peaks of spectral density. The 3dy and 6dy harmonics significantly lost their amplitude in all parts of the sea, and spectral density peaks are at the noise level. The simulation results showed us that the Danish straits do not filter 121dy and 40dy oscillations, and their amplitude does not decrease much. The 13dy, 6dy and 3dy oscillations significantly lose in amplitude and have no significant peaks of the spectral density. The 1.5dy harmonic propagates to the Gulfs of Finland and Riga, and increases in amplitude due to resonance at the natural frequency of the basin. It is suggested that, while Danish straits do not filter or transform frequency characteristics of oscillations propagated from the North Sea, but the Baltic Sea configuration may affect the magnitude and propagation extent of these oscillations. Thus, the fluctuations in the North Sea and the Danish Straits can significantly contribute to the Baltic Sea dynamics in the low-frequency range of the spectrum, and the periods of natural oscillations of the basin. The research was supported by the Russian Foundation for Basic Research (grant № 16-05-00534) and Saint-Petersburg State University (grant №18.37.140.2014)

Is social sciences and humanities (SSH) premedical education marginalized in the medical school admission process? A review and contextualization of the literature.

PubMed

Hall, Justin N; Woods, Nicole; Hanson, Mark D

2014-07-01

To investigate the performance outcomes of medical students with social sciences and humanities (SSH) premedical education during and beyond medical school by reviewing the literature, and to contextualize this review within today's admission milieu. From May to July 2012, the lead author searched the PubMed, MEDLINE, and PsycINFO databases, and reference lists of relevant articles, for research that compared premedical SSH education with premedical sciences education and its influence on performance during and/or after medical school. The authors extracted representative themes and relevant empirical findings. They contextualized their findings within today's admission milieu. A total of 1,548 citations were identified with 20 papers included in the review. SSH premedical education is predominately an American experience. For medical students with SSH background, equivalent academic, clinical, and research performance compared with medical students with a premedical science background is reported, yet different patterns of competencies exist. Post-medical-school equivalent or improved clinical performance is associated with an SSH background. Medical students with SSH backgrounds were more likely to select primary care or psychiatry careers. SSH major/course concentration, not SSH course counts, is important for admission decision making. The impact of today's admission milieu decreases the value of an SSH premedical education. Medical students with SSH premedical education perform on par with peers yet may possess different patterns of competencies, research, and career interests. However, SSH premedical education likely will not attain a significant role in medical school admission processes.

Right- and left-loop short shRNAs have distinct and unusual mechanisms of gene silencing

PubMed Central

Dallas, Anne; Ilves, Heini; Ge, Qing; Kumar, Pavan; Shorenstein, Joshua; Kazakov, Sergei A.; Cuellar, Trinna L.; McManus, Michael T.; Behlke, Mark A.; Johnston, Brian H.

2012-01-01

Small hairpin RNAs (shRNAs) having duplex lengths of 25–29 bp are normally processed by Dicer into short interfering RNAs (siRNAs) before incorporation into the RNA-induced silencing complex (RISC). However, shRNAs of ≤19 bp [short shRNAs (sshRNAs)] are too short for Dicer to excise their loops, raising questions about their mechanism of action. sshRNAs are designated as L-type or R-type according to whether the loop is positioned 3′ or 5′ to the guide sequence, respectively. Using nucleotide modifications that inhibit RNA cleavage, we show that R- but not L-sshRNAs require loop cleavage for optimum activity. Passenger-arm slicing was found to be important for optimal functioning of L-sshRNAs but much less important for R-sshRNAs that have a cleavable loop. R-sshRNAs could be immunoprecipitated by antibodies to Argonaute-1 (Ago1); complexes with Ago1 contained both intact and loop-cleaved sshRNAs. In contrast, L-sshRNAs were immunoprecipitated with either Ago1 or Ago2 and were predominantly sliced in the passenger arm of the hairpin. However, ‘pre-sliced’ L-sshRNAs were inactive. We conclude that active L-sshRNAs depend on slicing of the passenger arm to facilitate opening of the duplex, whereas R-sshRNAs primarily act via loop cleavage to generate a 5′-phosphate at the 5′-end of the guide strand. PMID:22810205

Upper Ocean Meso-Submesoscale Eddy Variability in the Northwestern Pacific from Repeat ADCP Measurements and 1/48-deg MITgcm Simulation

NASA Astrophysics Data System (ADS)

Qiu, B.; Nakano, T.; Chen, S.; Wang, J.; Fu, L. L.; Klein, P.

2016-12-01

With the use of Ka-band radar interferometry, the Surface Water and Ocean Topography (SWOT) satellite will improve the measured sea surface height (SSH) resolution down to the spectral wavelength of 15km, allowing us to investigate for the first time the upper oceancirculation variability at the submesoscale range on the global scale. By analyzing repeat shipboardAcoustic Doppler Current Profiler (ADCP) measurements along 137°E, as well as the 1/48-deg MITgcm simulation output, in the northwest Pacific, we demonstrate that the observed/modeled upper ocean velocities are comprised of balanced geostrophic motions and unbalanced ageostrophic wave motions. The length scale, Lc, that separates the dominance between these two types of motions is found to depend sensitively on the energy level of local mesoscale eddy variability. In the eddy-abundant western boundary current region of Kuroshio, Lc can be shorter than 15km, whereas Lc exceeds 200km along the path of relatively stable North Equatorial Current. Judicious separation between the balanced and unbalanced surface ocean signals will both be a challenge and opportunity for the SWOT mission.

The internal gravity wave spectrum in two high-resolution global ocean models

NASA Astrophysics Data System (ADS)

Arbic, B. K.; Ansong, J. K.; Buijsman, M. C.; Kunze, E. L.; Menemenlis, D.; Müller, M.; Richman, J. G.; Savage, A.; Shriver, J. F.; Wallcraft, A. J.; Zamudio, L.

2016-02-01

We examine the internal gravity wave (IGW) spectrum in two sets of high-resolution global ocean simulations that are forced concurrently by atmospheric fields and the astronomical tidal potential. We analyze global 1/12th and 1/25th degree HYCOM simulations, and global 1/12th, 1/24th, and 1/48th degree simulations of the MITgcm. We are motivated by the central role that IGWs play in ocean mixing, by operational considerations of the US Navy, which runs HYCOM as an ocean forecast model, and by the impact of the IGW continuum on the sea surface height (SSH) measurements that will be taken by the planned NASA/CNES SWOT wide-swath altimeter mission. We (1) compute the IGW horizontal wavenumber-frequency spectrum of kinetic energy, and interpret the results with linear dispersion relations computed from the IGW Sturm-Liouville problem, (2) compute and similarly interpret nonlinear spectral kinetic energy transfers in the IGW band, (3) compute and similarly interpret IGW contributions to SSH variance, (4) perform comparisons of modeled IGW kinetic energy frequency spectra with moored current meter observations, and (5) perform comparisons of modeled IGW kinetic energy vertical wavenumber-frequency spectra with moored observations. This presentation builds upon our work in Muller et al. (2015, GRL), who performed tasks (1), (2), and (4) in 1/12th and 1/25th degree HYCOM simulations, for one region of the North Pacific. New for this presentation are tasks (3) and (5), the inclusion of MITgcm solutions, and the analysis of additional ocean regions.

Evaluation of SARAL/AltiKa performance using GNSS/IMU equipped buoy in Sajafi, Imam Hassan and Kangan Ports

NASA Astrophysics Data System (ADS)

Ardalan, Alireza A.; Jazireeyan, Iraj; Abdi, Naser; Rezvani, Mohammad-Hadi

2018-03-01

Performance of SARAL/AltiKa mission has been evaluated within 2016 altimeter calibration/validation framework in Persian Gulf through three campaigns conducted in the offshore waters of Sajafi, Imam Hassan and Kangan Ports, while the altimeter overflew the passes 470, 111 and 25 on 13 Feb, 7 March and 17 June 2016, respectively. As the preparation, a lightweight buoy was equipped with a GNSS receiver/choke-ring antenna and a MEMS-based IMU to measure independent datasets in the field operations. To obtain accurate sea surface height (SSH) time series, the offset of the onboard antenna from the equilibrium sea level was predetermined through surveying operations as the buoy was deploying in the onshore waters of Kangan Port. Accordingly, the double-difference carrier phase observations have been processed via the Bernese GPS Software v. 5.0 so as to provide the GNSS-derived time series at the comparison points of the calibration campaigns, once the disturbing effects due to the platform tilt and heave have been eliminated. Owing to comparing of the SSH time series and the associating altimetry 1 Hz GDR-T datasets, the calibration/validation of the SARAL/AltiKa has been performed in the both cases of radiometer and ECMWF wet troposphere corrections so as to identify potential land contamination. An agreement of the present findings in comparison with those attained in other international calibrations sites confirms the promising feasibility of Persian Gulf as a new dedicated site for calibration/validation of ongoing and future altimetry missions.

Low-frequency western Pacific Ocean sea level and circulation changes due to the connectivity of the Philippine Archipelago

NASA Astrophysics Data System (ADS)

Zhuang, Wei; Qiu, Bo; Du, Yan

2013-12-01

Interannual-to-decadal sea level and circulation changes associated with the oceanic connectivity around the Philippine Archipelago are studied using satellite altimeter sea surface height (SSH) data and a reduced gravity ocean model. SSHs in the tropical North Pacific, the Sulu Sea and the eastern South China Sea (ESCS) display very similar low-frequency oscillations that are highly correlated with El Niño and Southern Oscillation. Model experiments reveal that these variations are mainly forced by the low-frequency winds over the North Pacific tropical gyre and affected little by the winds over the marginal seas and the North Pacific subtropical gyre. The wind-driven baroclinic Rossby waves impinge on the eastern Philippine coast and excite coastal Kelvin waves, conveying the SSH signals through the Sibutu Passage-Mindoro Strait pathway into the Sulu Sea and the ESCS. Closures of the Luzon Strait, Karimata Strait, and ITF passages have little impacts on the low-frequency sea level changes in the Sulu Sea and the ESCS. The oceanic pathway west of the Philippine Archipelago modulates the western boundary current system in the tropical North Pacific. Opening of this pathway weakens the time-varying amplitudes of the North Equatorial Current bifurcation latitude and Kuroshio transport. Changes of the amplitudes can be explained by the conceptual framework of island rule that allows for baroclinic adjustment. Although it fails to capture the interannual changes in the strongly nonlinear Mindanao Current, the time-dependent island rule is nevertheless helpful in clarifying the role of the archipelago in regulating its multidecadal variations.

Decadal variations of Pacific North Equatorial Current bifurcation from multiple ocean products

NASA Astrophysics Data System (ADS)

Zhai, Fangguo; Wang, Qingye; Wang, Fujun; Hu, Dunxin

2014-02-01

In this study, we examine the decadal variations of the Pacific North Equatorial Current (NEC) bifurcation latitude (NBL) averaged over upper 100 m and underlying dynamics over the past six decades using 11 ocean products, including seven kinds of ocean reanalyzes based on ocean data assimilation systems, two kinds of numerical simulations without assimilating observations and two kinds of objective analyzes based on in situ observations only. During the period of 1954-2007, the multiproduct mean of decadal NBL anomalies shows maxima around 1965/1966, 1980/1981, 1995/1996, and 2003/2004, and minima around 1958, 1971/1972, 1986/1987, and 2000/2001, respectively. The NBL decadal variations are related to the first Empirical Orthogonal Function mode of decadal anomalies of sea surface height (SSH) in the northwestern tropical Pacific Ocean, which shows spatially coherent variation over the whole region and explains most of the total variance. Further regression and composite analyzes indicate that northerly/southerly NBL corresponds to negative/positive SSH anomalies and cyclonic/anticyclonic gyre anomalies in the northwestern tropical Pacific Ocean. These decadal circulation variations and thus the decadal NBL variations are governed mostly by the first two vertical modes and attribute the most to the first baroclinic mode. The NBL decadal variation is highly positively correlated with the tropical Pacific decadal variability (TPDV) around the zero time lag. With a lead of about half the decadal cycle the NBL displays closer but negative relationship to TPDV in four ocean products, possibly manifesting the dynamical role of the circulation in the northwestern tropical Pacific in the phase-shifting of TPDV.

On the Flow of Atlantic Water Towards the Arctic Ocean; a Synergy Between Altimetry and Hydrography.

NASA Astrophysics Data System (ADS)

Chafik, L.; Nilsson, J.; Skagseth, O.; Lundberg, P.

2015-12-01

The Arctic climate is strongly influenced by the inflow of warm Atlantic water conveyed by the Norwegian Atlantic Slope Current (NwASC); the main heat conveyor into the Arctic Ocean. Based on sea surface height (SSH) data from altimetry, we develop a dynamical measure of the NwASC transport to diagnose its spatio-temporal variability. This supports a dynamical division of the NwASC into two flow regimes; the Svinøy Branch (SvB) in the Norwegian Sea, and the Fram Strait Branch (FSB) west of Spitsbergen. The SvB transport is well correlated with the SSH and atmospheric variability within the Nordic Seas, factors that also affect the inflow to the Barents Sea. In contrast, the FSB is regulated by regional atmospheric patterns around Svalbard and northern Barents Sea. We further relate anomalous flow events to temperature fluctuations of Atlantic water. A warm anomaly is found to propagate northwards, with a tendency to amplify enroute, after events of strong flow in the Norwegian Sea. A roughly 12-months delayed temperature signal is identified in the FSB. This suggests that hydrographic anomalies both upstream from the North Atlantic, and locally generated in the Norwegian Sea, are important for the oceanic heat and salt transport that eventually enters into the Arctic. We believe that the combination of the flow from altimetry and temperature fluctuations in the Nordic Seas can be used to qualitatively predict warm anomalies towards the Arctic Ocean, which could be a valuable addition to the forecast skill of the statistical Arctic sea-ice models.

The Influence of the Terrestrial Reference Frame on Studies of Sea Level Change

NASA Astrophysics Data System (ADS)

Nerem, R. S.; Bar-Sever, Y. E.; Haines, B. J.; Desai, S.; Heflin, M. B.

2015-12-01

The terrestrial reference frame (TRF) provides the foundation for the accurate monitoring of sea level using both ground-based (tide gauges) and space-based (satellite altimetry) techniques. For the latter, tide gauges are also used to monitor drifts in the satellite instruments over time. The accuracy of the terrestrial reference frame (TRF) is thus a critical component for both types of sea level measurements. The TRF is central to the formation of geocentric sea-surface height (SSH) measurements from satellite altimeter data. The computed satellite orbits are linked to a particular TRF via the assumed locations of the ground-based tracking systems. The manner in which TRF errors are expressed in the orbit solution (and thus SSH) is not straightforward, and depends on the models of the forces underlying the satellite's motion. We discuss this relationship, and provide examples of the systematic TRF-induced errors in the altimeter derived sea-level record. The TRF is also crucial to the interpretation of tide-gauge measurements, as it enables the separation of vertical land motion from volumetric changes in the water level. TRF errors affect tide gauge measurements through GNSS estimates of the vertical land motion at each tide gauge. This talk will discuss the current accuracy of the TRF and how errors in the TRF impact both satellite altimeter and tide gauge sea level measurements. We will also discuss simulations of how the proposed Geodetic Reference Antenna in SPace (GRASP) satellite mission could reduce these errors and revolutionize how reference frames are computed in general.

Exploring image data assimilation in the prospect of high-resolution satellite data

NASA Astrophysics Data System (ADS)

Verron, J. A.; Duran, M.; Gaultier, L.; Brankart, J. M.; Brasseur, P.

2016-02-01

Many recent works show the key importance of studying the ocean at fine scales including the meso- and submesoscales. Satellite observations such as ocean color data provide informations on a wide range of scales but do not directly provide information on ocean dynamics. Satellite altimetry provide informations on the ocean dynamic topography (SSH) but so far with a limited resolution in space and even more, in time. However, in the near future, high-resolution SSH data (e.g. SWOT) will give a vision of the dynamic topography at such fine space resolution. This raises some challenging issues for data assimilation in physical oceanography: develop reliable methodology to assimilate high resolution data, make integrated use of various data sets including biogeochemical data, and even more simply, solve the challenge of handling large amont of data and huge state vectors. In this work, we propose to consider structured information rather than pointwise data. First, we take an image data assimilation approach in studying the feasibility of inverting tracer observations from Sea Surface Temperature and/or Ocean Color datasets, to improve the description of mesoscale dynamics provided by altimetric observations. Finite Size Lyapunov Exponents are used as an image proxy. The inverse problem is formulated in a Bayesian framework and expressed in terms of a cost function measuring the misfits between the two images. Second, we explore the inversion of SWOT-like high resolution SSH data and more especially the various possible proxies of the actual SSH that could be used to control the ocean circulation at various scales. One focus is made on controlling the subsurface ocean from surface only data. A key point lies in the errors and uncertainties that are associated to SWOT data.

Preferential Targeting of a Signal Recognition Particle-dependent Precursor to the Ssh1p Translocon in Yeast♦

PubMed Central

Spiller, Michael P.; Stirling, Colin J.

2011-01-01

Protein translocation across the endoplasmic reticulum membrane occurs via a “translocon” channel formed by the Sec61p complex. In yeast, two channels exist: the canonical Sec61p channel and a homolog called Ssh1p. Here, we used trapped translocation intermediates to demonstrate that a specific signal recognition particle-dependent substrate, Sec71p, is targeted exclusively to Ssh1p. Strikingly, we found that, in the absence of Ssh1p, precursor could be successfully redirected to canonical Sec61p, demonstrating that the normal targeting reaction must involve preferential sorting to Ssh1p. Our data therefore demonstrate that Ssh1p is the primary translocon for Sec71p and reveal a novel sorting mechanism at the level of the endoplasmic reticulum membrane enabling precursors to be directed to distinct translocons. Interestingly, the Ssh1p-dependent translocation of Sec71p was found to be dependent upon Sec63p, demonstrating a previously unappreciated functional interaction between Sec63p and the Ssh1p translocon. PMID:21454595

The impact of wave-induced Coriolis-Stokes forcing on satellite-derived ocean surface currents

NASA Astrophysics Data System (ADS)

Hui, Zhenli; Xu, Yongsheng

2016-01-01

Ocean surface currents estimated from the satellite data consist of two terms: Ekman currents from the wind stress and geostrophic currents from the sea surface height (SSH). But the classical Ekman model does not consider the wave effects. By taking the wave-induced Coriolis-Stokes forcing into account, the impact of waves (primarily the Stokes drift) on ocean surface currents is investigated and the wave-modified currents are formed. The products are validated by comparing with OSCAR currents and Lagrangian drifter velocity. The result shows that our products with the Stokes drift are better adapted to the in situ Lagrangian drifter currents. Especially in the Southern Ocean region (40°S-65°S), 90% (91%) of the zonal (meridional) currents have been improved compared with currents that do not include Stokes drift. The correlation (RMSE) in the Southern Ocean has also increased (decreased) from 0.78 (13) to 0.81 (10.99) for the zonal component and 0.76 (10.87) to 0.79 (10.09) for the meridional component. This finding provides the evidence that waves indeed play an important role in the ocean circulation, and need to be represented in numerical simulations of the global ocean circulation. This article was corrected on 10 FEB 2016. See the end of the full text for details.

Regional circulation around Heard and McDonald Islands and through the Fawn Trough, central Kerguelen Plateau

NASA Astrophysics Data System (ADS)

van Wijk, Esmee M.; Rintoul, Stephen R.; Ronai, Belinda M.; Williams, Guy D.

2010-05-01

The fine-scale circulation around the Heard and McDonald Islands and through the Fawn Trough, Kerguelen Plateau, is described using data from three high-resolution CTD sections, Argo floats and satellite maps of chlorophyll a, sea surface temperature (SST) and absolute sea surface height (SSH). We confirm that the Polar Front (PF) is split into two branches over the Kerguelen Plateau, with the NPF crossing the north-eastern limits of our survey carrying 25 Sv to the southeast. The SPF was associated with a strong eastward-flowing jet carrying 12 Sv of baroclinic transport through the deepest part of Fawn Trough (relative to the bottom). As the section was terminated midway through the trough this estimate is very likely to be a lower bound for the total transport. We demonstrate that the SPF contributes to the Fawn Trough Current identified by previous studies. After exiting the Fawn Trough, the SPF crossed Chun Spur and continued as a strong north-westward flowing jet along the eastern flank of the Kerguelen Plateau before turning offshore between 50°S and 51.5°S. Measured bottom water temperatures suggest a deep water connection between the northern and southern parts of the eastern Kerguelen Plateau indicating that the deep western boundary current continues at least as far north as 50.5°S. Analysis of satellite altimetry derived SSH streamlines demonstrates a southward shift of both the northern and southern branches of the Polar Front from 1994 to 2004. In the direct vicinity of the Heard and McDonald islands, cool waters of southern origin flow along the Heard Island slope and through the Eastern Trough bringing cold Winter Water (WW) onto the plateau. Complex topography funnels flow through canyons, deepens the mixed layer and increases productivity, resulting in this area being the preferred foraging region for a number of satellite-tracked land-based predators.

Fit to predict? Eco-informatics for predicting the catchability of a pelagic fish in near real time.

PubMed

Scales, Kylie L; Hazen, Elliott L; Maxwell, Sara M; Dewar, Heidi; Kohin, Suzanne; Jacox, Michael G; Edwards, Christopher A; Briscoe, Dana K; Crowder, Larry B; Lewison, Rebecca L; Bograd, Steven J

2017-12-01

The ocean is a dynamic environment inhabited by a diverse array of highly migratory species, many of which are under direct exploitation in targeted fisheries. The timescales of variability in the marine realm coupled with the extreme mobility of ocean-wandering species such as tuna and billfish complicates fisheries management. Developing eco-informatics solutions that allow for near real-time prediction of the distributions of highly mobile marine species is an important step towards the maturation of dynamic ocean management and ecological forecasting. Using 25 yr (1990-2014) of NOAA fisheries' observer data from the California drift gillnet fishery, we model relative probability of occurrence (presence-absence) and catchability (total catch per gillnet set) of broadbill swordfish Xiphias gladius in the California Current System. Using freely available environmental data sets and open source software, we explore the physical drivers of regional swordfish distribution. Comparing models built upon remotely sensed data sets with those built upon a data-assimilative configuration of the Regional Ocean Modelling System (ROMS), we explore trade-offs in model construction, and address how physical data can affect predictive performance and operational capacity. Swordfish catchability was found to be highest in deeper waters (>1,500 m) with surface temperatures in the 14-20°C range, isothermal layer depth (ILD) of 20-40 m, positive sea surface height (SSH) anomalies, and during the new moon (<20% lunar illumination). We observed a greater influence of mesoscale variability (SSH, wind speed, isothermal layer depth, eddy kinetic energy) in driving swordfish catchability (total catch) than was evident in predicting the relative probability of presence (presence-absence), confirming the utility of generating spatiotemporally dynamic predictions. Data-assimilative ROMS circumvent the limitations of satellite remote sensing in providing physical data fields for species distribution models (e.g., cloud cover, variable resolution, subsurface data), and facilitate broad-scale prediction of dynamic species distributions in near real time. © 2017 by the Ecological Society of America.

SSH-2 measurements of cirrus at 18-28 micrometers from the King Air during FIRE 2

NASA Technical Reports Server (NTRS)

Griffin, Michael K.

1993-01-01

In November of 1991, the First ISCCP (International Satellite Cloud Climatology Project) Regional Experiment (FIRE) Phase II cirrus study took place at Coffeyville, Kansas. The field experiment incorporated instrumentation from surface, aircraft, and satellite to attempt to define the optical, radiative, and microphysical characteristics of these high altitude, predominantly ice clouds. The NCAR King Air research aircraft was outfitted with a variety of radiative and microphysical instrumentation for the FIRE II project. Included for this project was the SSH-2, a 16-channel passive radiometer. The SSH-2 was originally designed as a space-qualified infrared (IR) temperature and water vapor sounder for deployment onboard the Defense Meteorological Satellite Program (DMSP) series of environmental satellites. For this experiment, only those channels associated with the water vapor profiling function have been examined although downwelling radiance measurements were taken at all channels during the project. With supporting information from the aircraft telemetry observations it may be possible to relate these SSH-2 measurements to cloud radiative and microphysical properties. The following sections will describe the spectral characteristics of the instrument, the calibration scheme used to convert the raw measured counts into calibrated radiances, and the case studies that will be covered in this paper. This will be followed by a discussion of the results of this preliminary investigation and a description of future work to be done.

Modes of Arctic Ocean Change from GRACE, ICESat and the PIOMAS and ECCO2 Models of the Arctic Ocean

NASA Astrophysics Data System (ADS)

Peralta Ferriz, C.; Morison, J. H.; Bonin, J. A.; Chambers, D. P.; Kwok, R.; Zhang, J.

2012-12-01

EOF analysis of month-to-month variations in GRACE derived Arctic Ocean bottom pressure (OBP) with trend and seasonal variation removed yield three dominant modes. The first mode is a basin wide variation in mass associated with high atmospheric pressure (SLP) over Scandinavia mainly in winter. The second mode is a shift of mass from the central Arctic Ocean to the Siberian shelves due to low pressure over the basins, associated with the Arctic Oscillation. The third mode is a shift in mass between the Eastern and Western Siberian shelves, related to strength of the Beaufort High mainly in summer, and to eastward alongshore winds on the Barents Sea in winter. The PIOMAS and ECCO2 modeled OBP show fair agreement with the form of these modes and provide context in terms of variations in sea surface height SSH. Comparing GRACE OBP from 2007 to 2011 with GRACE OBP from 2002 to 2006 reveals a rising trend over most of the Arctic Ocean but declines in the Kara Sea region and summer East Siberian Sea. ECCO2 bears a faint resemblance to the observed OBP change but appears to be biased negatively. In contrast, PIOMAS SSH and ECCO2 especially, show changes between the two periods that are muted but similar to ICESat dynamic ocean topography and GRACE-ICESat freshwater trends from 2005 through 2008 [Morison et al., 2012] with a rising DOT and freshening in the Beaufort Sea and a trough with decreased freshwater on the Russian side of the Arctic Ocean. Morison, J., R. Kwok, C. Peralta-Ferriz, M. Alkire, I. Rigor, R. Andersen, and M. Steele (2012), Changing Arctic Ocean freshwater pathways, Nature, 481(7379), 66-70.

The Kuroshio Extension low-frequency variability analyzed with altimeter data through an ad hoc composite index

NASA Astrophysics Data System (ADS)

Pierini, Stefano; Gentile, Vittorio; de Ruggiero, Paola; Pietranera, Luca

2017-04-01

The Kuroshio Extension (KE) low-frequency variability (LFV) is analyzed with the satellite altimeter data distributed by AVISO from January 1993 to November 2015 through a new ad hoc composite index [1] that links the mean latitudinal position L of the KE jet and an integrated wavelet amplitude A measuring the high-frequency variability (HFV) of the KE path. This approach allows one to follow the KE evolution as an orbit in the (L,A) plane, as typically done in dynamical systems theory. Three intervals, I1 (1993-1998), I2 (1998-2006) and I3 (2006-November 2015) are separately analyzed also with sea surface height (SSH) maps. In I1 and I3, L and A are mostly anti-correlated and a recharging phase (characterized by a weak convoluted jet experiencing a rapid increase of the HFV) begins when negative SSH anomalies, remotely generated by the Pacific Decadal Oscillation, reach the KE region. On the other hand, in I2 the KE evolution is described by a hysteresis loop: this starts with a weak jet state followed by a recharging phase leading, in turn, to a persistent two-meander state, to its progressive and rapid erosion and, eventually, to the reestablishment of a weak jet state. This loop is found to correspond quite closely to the highly nonlinear intrinsic relaxation oscillation obtained in numerical process studies [1,2]. This supports the hypothesis that the KE LFV may have been controlled, during I2, by an intrinsic oceanic mode of variability. [1] Pierini S., 2015. J. Climate, 28, 5873-5881. [2] Pierini S., 2006. J. Phys. Oceanogr., 36, 1605-1625.

Relationship between Ocean Bottom Pressure Variations and Baroclinic Eddy off Kushiro-Tokachi

NASA Astrophysics Data System (ADS)

Hasegawa, T.; Nagano, A.; Matsumoto, H.; Ariyoshi, K.

2016-02-01

The scope of this study is to reveal relationships between ocean bottom pressure (BP) variations related to ocean plate changes, and oceanic climate changes. We analyzed BP data at stations PG1 (41.7040N-144.4375E) and PG2 (42.2365N-144.8454E) obtained from the Long-Term Deep Sea Floor Observatory off Kushiro-Tokachi in the Kuril Trench, gridded daily sea surface height (SSH) data provided by AVISO, and conductivity-temperature-depth (CTD) data at a repeated observation line off Akkeshi (A-line) from 2004 to 2013. In addition, we used Nino-3 index, which is the major index for El Nino/Southern Oscillation (ENSO) and is given by the CPC/NOAA. It is suggested that SSH at PG1 and PG2 similarly vary affected by the Oyashio, the western boundary current of the North Pacific subarctic gyre, and El Nino events in 2006 and 2007 via atmospheric telconnections. BP time series at PG1 and PG2 are almost in phase in most of the analysis period, but from the early 2006 to the end of 2007, are quit discrepant in amplitude; at that occasion, BP at PG1 is much higher than that at PG2. Expecting a peculiar hydrographic feature at the occasion, CTD data along the A-line in January 2007 are analyzed. A lenticular eddy was found to exist in a layer between 1500 and 3000 dbar and to deepen substantially isopycnals of approximately 27.7 sigma-theta around a depth of 2000 dbar. Probably due to the baroclinic eddy feature, BP is kept low at PG2, while high at PG1. The subthermocline water occupying the deep eddy are considered not to be originated in the North Pacific but to be derived from the Southern Ocean.

Instrumented SSH

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campbell, Scott; Campbell, Scott

NERSC recently undertook a project to access and analyze Secure Shell (SSH) related data. This includes authentication data such as user names and key fingerprints, interactive session data such as keystrokes and responses, and information about noninteractive sessions such as commands executed and files transferred. Historically, this data has been inaccessible with traditional network monitoring techniques, but with a modification to the SSH daemon, this data can be passed directly to intrusion detection systems for analysis. The instrumented version of SSH is now running on all NERSC production systems. This paper describes the project, details about how SSH was instrumented,more » and the initial results of putting this in production.« less

Proposal and Implementation of SSH Client System Using Ajax

NASA Astrophysics Data System (ADS)

Kosuda, Yusuke; Sasaki, Ryoichi

Technology called Ajax gives web applications the functionality and operability of desktop applications. In this study, we propose and implement a Secure Shell (SSH) client system using Ajax, independent of the OS or Java execution environment. In this system, SSH packets are generated on a web browser by using JavaScript and a web server works as a proxy in communication with an SSH server to realize end-to-end SSH communication. We implemented a prototype program and confirmed by experiment that it runs on several web browsers and mobile phones. This system has enabled secure SSH communication from a PC at an Internet cafe or any mobile phone. By measuring the processing performance, we verified satisfactory performance for emergency use, although the speed was unsatisfactory in some cases with mobile phone. The system proposed in this study will be effective in various fields of E-Business.

Improved gravity anomaly fields from retracked multimission satellite radar altimetry observations over the Persian Gulf and the Caspian Sea

NASA Astrophysics Data System (ADS)

Khaki, M.; Forootan, E.; Sharifi, M. A.; Awange, J.; Kuhn, M.

2015-09-01

Satellite radar altimetry observations are used to derive short wavelength gravity anomaly fields over the Persian Gulf and the Caspian Sea, where in situ and ship-borne gravity measurements have limited spatial coverage. In this study the retracking algorithm `Extrema Retracking' (ExtR) was employed to improve sea surface height (SSH) measurements that are highly biased in the study regions due to land contaminations in the footprints of the satellite altimetry observations. ExtR was applied to the waveforms sampled by the five satellite radar altimetry missions: TOPEX/POSEIDON, JASON-1, JASON-2, GFO and ERS-1. Along-track slopes have been estimated from the improved SSH measurements and used in an iterative process to estimate deflections of the vertical, and subsequently, the desired gravity anomalies. The main steps of the gravity anomaly computations involve estimating improved SSH using the ExtR technique, computing deflections of the vertical from interpolated SSHs on a regular grid using a biharmonic spline interpolation and finally estimating gridded gravity anomalies. A remove-compute-restore algorithm, based on the fast Fourier transform, has been applied to convert deflections of the vertical into gravity anomalies. Finally, spline interpolation has been used to estimate regular gravity anomaly grids over the two study regions. Results were evaluated by comparing the estimated altimetry-derived gravity anomalies (with and without implementing the ExtR algorithm) with ship-borne free air gravity anomaly observations, and free air gravity anomalies from the Earth Gravitational Model 2008 (EGM2008). The comparison indicates a range of 3-5 mGal in the residuals, which were computed by taking the differences between the retracked altimetry-derived gravity anomaly and the ship-borne data. The comparison of retracked data with ship-borne data indicates a range in the root-mean-square-error (RMSE) between approximately 1.8 and 4.4 mGal and a bias between 0.4062 and 2.1413 mGal over different areas. Also a maximum RMSE of 4.4069 mGal, with a mean value of 0.7615 mGal was obtained in the residuals. An average improvement of 5.2746 mGal in the RMSE of the altimetry-derived gravity anomalies corresponding to 89.9 per cent was obtained after applying the ExtR post-processing.

Tumor necrosis factor-α, kidney function, and hypertension.

PubMed

Mehaffey, Eamonn; Majid, Dewan S A

2017-10-01

Hypertension is considered to be a low-grade inflammatory condition characterized by the presence of various proinflammatory cytokines. Tumor necrosis factor-α (TNF-α) is a constituent of the proinflammatory cytokines that is associated with salt-sensitive hypertension (SSH) and related renal injury. Elevated angiotensin II (ANG II) and other factors such as oxidative stress conditions promote TNF-α formation. Many recent studies have provided evidence that TNF-α exerts a direct renal action by regulating hemodynamic and excretory function in the kidney. The cytokine incites a strong natriuretic response and plays a part in regulation of the intrarenal renin-angiotensin system. The exact mechanistic role of TNF-α in the development of SSH is as yet poorly understood. While TNF-α antagonism has been shown to attenuate hypertensive responses in many hypertensive animal models, contrasting findings demonstrate that the direct systemic administration of TNF-α usually induces hypotensive as well as natriuretic responses, indicating a counterregulatory role of TNF-α in SSH. Differential activities of two cell surface receptors of TNF-α (receptor type 1 and type 2) may explain the contradictory functions of TNF-α in the setting of hypertension. This short review will evaluate ongoing research studies that investigate the action of TNF-α within the kidney and its role as an influential pathophysiological variable in the development of SSH and renal injury. This information may help to develop specific TNF-α receptor targeting as an effective treatment strategy in this clinical condition. Copyright © 2017 the American Physiological Society.

Direct SSH Gateway Access to Peregrine | High Performance Computing |

Science.gov Websites

can access peregrine-ssh.nrel.gov, you must have: An active NREL HPC user account (see User Accounts ) An OTP Token (see One Time Password Tokens) Logging into peregrine-ssh.nrel.gov With your HPC account

Variations in freshwater pathways from the Arctic Ocean into the North Atlantic Ocean

NASA Astrophysics Data System (ADS)

Wang, Zeliang; Hamilton, James; Su, Jie

2017-06-01

Understanding the mechanisms that drive exchanges between the Arctic Ocean and adjacent oceans is critical to building our knowledge of how the Arctic is reacting to a warming climate, and how potential changes in Arctic Ocean freshwater export may impact the AMOC (Atlantic Meridional Overturning Circulation). Here, freshwater pathways from the Arctic Ocean to the North Atlantic are investigated using a 1 degree global model. An EOF analysis of modeled sea surface height (SSH) demonstrates that while the second mode accounts for only 15% of the variability, the associated geostrophic currents are strongly correlated with freshwater exports through CAA (Canadian Arctic Archipelago; r = 0.75), Nares Strait (r = 0.77) and Fram Strait (r = -0.60). Separation of sea level into contributing parts allows us to show that the EOF1 is primarily a barotropic mode reflecting variability in bottom pressure equivalent sea level, while the EOF2 mode reflects changes in steric height in the Arctic Basin. This second mode is linked to momentum wind driven surface current, and dominates the Arctic Ocean freshwater exports. Both the Arctic Oscillation and Arctic Dipole atmospheric indices are shown to be linked to Arctic Ocean freshwater exports, with the forcing associated with the Arctic Dipole reflecting the out-of-phase relationship between transports through the CAA and those through Fram Strait. Finally, observed freshwater transport variation through the CAA is found to be strongly correlated with tide gauge data from the Beaufort Sea coast (r = 0.81), and with the EOF2 mode of GRACE bottom pressure data (r = 0.85) on inter-annual timescales.

Minimal-length Synthetic shRNAs Formulated with Lipid Nanoparticles are Potent Inhibitors of Hepatitis C Virus IRES-linked Gene Expression in Mice

PubMed Central

Dallas, Anne; Ilves, Heini; Shorenstein, Joshua; Judge, Adam; Spitler, Ryan; Contag, Christopher; Wong, Suet Ping; Harbottle, Richard P; MacLachlan, Ian; Johnston, Brian H

2013-01-01

We previously identified short synthetic shRNAs (sshRNAs) that target a conserved hepatitis C virus (HCV) sequence within the internal ribosome entry site (IRES) of HCV and potently inhibit HCV IRES-linked gene expression. To assess in vivo liver delivery and activity, the HCV-directed sshRNA SG220 was formulated into lipid nanoparticles (LNP) and injected i.v. into mice whose livers supported stable HCV IRES-luciferase expression from a liver-specific promoter. After a single injection, RNase protection assays for the sshRNA and 3H labeling of a lipid component of the nanoparticles showed efficient liver uptake of both components and long-lasting survival of a significant fraction of the sshRNA in the liver. In vivo imaging showed a dose-dependent inhibition of luciferase expression (>90% 1 day after injection of 2.5 mg/kg sshRNA) with t1/2 for recovery of about 3 weeks. These results demonstrate the ability of moderate levels of i.v.-injected, LNP-formulated sshRNAs to be taken up by liver hepatocytes at a level sufficient to substantially suppress gene expression. Suppression is rapid and durable, suggesting that sshRNAs may have promise as therapeutic agents for liver indications. PMID:24045712

Attenuation of CCl4-Induced Oxidative Stress and Hepatonephrotoxicity by Saudi Sidr Honey in Rats.

PubMed

Al-Yahya, Mohammed; Mothana, Ramzi; Al-Said, Mansour; Al-Dosari, Mohammed; Al-Musayeib, Nawal; Al-Sohaibani, Mohammed; Parvez, Mohammad Khalid; Rafatullah, Syed

2013-01-01

The present study was undertaken to investigate the possible protective effect of Saudi Sidr honey (SSH) on carbon tetrachloride (CCl4) induced oxidative stress and liver and kidney damage in rat. Moreover, the antioxidant activity and the phenolic and flavonoidal contents were determined. The hepatorenal protective activity of the SSH was determined by assessing biochemical, hematological, and histological parameters. Serum transaminases, ALP, GGT, creatinine, bilirubin urea, uric acid, and MDA level in liver and kidney tissues were significantly elevated, and the antioxidant status of nonprotein sulfhydryls, albumin, and total protein levels in liver and kidney were declined significantly in CCl4 alone treated animals. Pretreatment with SSH and silymarin prior to the administration of CCl4 significantly prevented the increase of the serum levels of enzyme markers and reduced oxidative stress. SSH also exhibited a significant lipid-lowering effect and caused an HDL-C enhanced level in serum. The histopathological evaluation of the liver and kidney also revealed that honey protected incidence of both liver and kidney lesions. Moreover, SSH showed a strong antioxidant activity in DPPH and β -carotene-linoleic acid assays. SSH was found to contain phenolic compounds. Additionally, the SSH supplementation restored the hepatocytes viability against 2',7'-dichlorofluorescein (DCF) toxicity in ex vivo test.

Attenuation of CCl4-Induced Oxidative Stress and Hepatonephrotoxicity by Saudi Sidr Honey in Rats

PubMed Central

Al-Yahya, Mohammed; Mothana, Ramzi; Al-Said, Mansour; Al-Dosari, Mohammed; Al-Musayeib, Nawal; Al-Sohaibani, Mohammed; Parvez, Mohammad Khalid; Rafatullah, Syed

2013-01-01

The present study was undertaken to investigate the possible protective effect of Saudi Sidr honey (SSH) on carbon tetrachloride (CCl4) induced oxidative stress and liver and kidney damage in rat. Moreover, the antioxidant activity and the phenolic and flavonoidal contents were determined. The hepatorenal protective activity of the SSH was determined by assessing biochemical, hematological, and histological parameters. Serum transaminases, ALP, GGT, creatinine, bilirubin urea, uric acid, and MDA level in liver and kidney tissues were significantly elevated, and the antioxidant status of nonprotein sulfhydryls, albumin, and total protein levels in liver and kidney were declined significantly in CCl4 alone treated animals. Pretreatment with SSH and silymarin prior to the administration of CCl4 significantly prevented the increase of the serum levels of enzyme markers and reduced oxidative stress. SSH also exhibited a significant lipid-lowering effect and caused an HDL-C enhanced level in serum. The histopathological evaluation of the liver and kidney also revealed that honey protected incidence of both liver and kidney lesions. Moreover, SSH showed a strong antioxidant activity in DPPH and β-carotene-linoleic acid assays. SSH was found to contain phenolic compounds. Additionally, the SSH supplementation restored the hepatocytes viability against 2′,7′-dichlorofluorescein (DCF) toxicity in ex vivo test. PMID:23533498

From population connectivity to the art of striping Russian dolls: the lessons from Pocillopora corals.

PubMed

Gélin, Pauline; Fauvelot, Cécile; Bigot, Lionel; Baly, Joseph; Magalon, Hélène

2018-01-01

Here, we examined the genetic variability in the coral genus Pocillopora , in particular within the Primary Species Hypothesis PSH09, identified by Gélin, Postaire, Fauvelot and Magalon (2017) using species delimitation methods [also named Pocillopora eydouxi/meandrina complex sensu , Schmidt-Roach, Miller, Lundgren, & Andreakis (2014)] and which was found to split into three secondary species hypotheses (SSH09a, SSH09b, and SSH09c) according to assignment tests using multi-locus genotypes (13 microsatellites). From a large sampling (2,507 colonies) achieved in three marine provinces [Western Indian Ocean (WIO), Tropical Southwestern Pacific (TSP), and Southeast Polynesia (SEP)], genetic structuring analysis conducted with two clustering analyses (structure and DAPC) using 13 microsatellites revealed that SSH09a was restricted to the WIO while SSH09b and SSH09c were almost exclusively in the TSP and SEP. More surprisingly, each SSH split into two to three genetically differentiated clusters, found in sympatry at the reef scale, leading to a pattern of nested hierarchical levels (PSH > SSH > cluster), each level hiding highly differentiated genetic groups. Thus, rather than structured populations within a single species, these three SSHs, and even the eight clusters, likely represent distinct genetic lineages engaged in a speciation process or real species. The issue is now to understand which hierarchical level (SSH, cluster, or even below) corresponds to the species one. Several hypotheses are discussed on the processes leading to this pattern of mixed clusters in sympatry, evoking formation of reproductive barriers, either by allopatric speciation or habitat selection.

Improving the Accuracy of Coastal Sea Surface Heights by Retracking Decontaminated Radar Altimetry Waveforms

NASA Astrophysics Data System (ADS)

Huang, Zhengkai; Wang, Haihong; Luo, Zhicai

2017-04-01

Due to the complex coastal topography and energetic ocean dynamics effect, the return echoes are contaminated while the satellite footprint approaches or leaves the coastline. Specular peaks are often induced in the trailing edges of contaminated waveforms, thus leading the error in the determination of the leading edge and associated track offset in the waveform retracking process. We propose an improved algorithm base on Tseng's modification method to decontaminated coastal (0-7 km from coastline) waveforms, thus improving both the utilization and precision of coastal sea surface height (SSH). Using the Envisat/Jason-2 SGDR data, the shortcoming of Tseng's method is pointed out and the novel algorithm is proposed by revising the strategy of selecting reference waveform and determining weight for removing outlier. The reference waveform of the decontaminated technology is closer to the real waveform of the offshore area, which avoids the over-modification problem of Tseng method. The sea-level measurements from tide gauge station and geoid height from EGM2008 model were used to validate the retracking strategy. Experimental results show that decontaminated waveform was more suitable than original and Tseng modified waveform and has uniform performance in both compare to the tide gauge and geoid. The retrieved altimetry data in the 0-1km and 1-7km coastal zone indicate that threshold retracker with decontaminated waveform have STD of 73.8cm and 33cm as compared with in situ gauge data,which correspond to 62.1% and 58% in precession compared to the unretracked altimetry measurements. The retracked SSHs are better in two coastal (0-1 km and 1-7km) zones, which have STD of 11.9cm and 22.7cm as compared with geoid height. Furthermore, the comparisons shows that the precision of decontaminated technology improve 0.3cm and 3.3cm than the best result of PISTACH product in coastal sea. This work is supported by the National Natural Science Foundation of China (Grant Nos. 41174020, 41174021, 41131067) and the open fund of Guangxi Key Laboratory of Spatial Information and Geometrics (Grant No. 15-140-07-26). Index Terms: retracking, Envisat, Jason-2, Coastal sea, decontamination.

The Gulf Stream frontal system: A key oceanographic feature in the habitat selection of the leatherback turtle?

NASA Astrophysics Data System (ADS)

Chambault, Philippine; Roquet, Fabien; Benhamou, Simon; Baudena, Alberto; Pauthenet, Etienne; de Thoisy, Benoît; Bonola, Marc; Dos Reis, Virginie; Crasson, Rodrigue; Brucker, Mathieu; Le Maho, Yvon; Chevallier, Damien

2017-05-01

Although some associations between the leatherback turtle Dermochelys coriacea and the Gulf Stream current have been previously suggested, no study has to date demonstrated strong affinities between leatherback movements and this particular frontal system using thorough oceanographic data in both the horizontal and vertical dimensions. The importance of the Gulf Stream frontal system in the selection of high residence time (HRT) areas by the North Atlantic leatherback turtle is assessed here for the first time using state-of-the-art ocean reanalysis products. Ten adult females from the Eastern French Guianese rookery were satellite tracked during post-nesting migration to relate (1) their horizontal movements to physical gradients (Sea Surface Temperature (SST), Sea Surface Height (SSH) and filaments) and biological variables (micronekton and chlorophyll a), and (2) their diving behaviour to vertical structures within the water column (mixed layer, thermocline, halocline and nutricline). All the turtles migrated northward towards the Gulf Stream north wall. Although their HRT areas were geographically remote (spread between 80-30 °W and 28-45 °N), all the turtles targeted similar habitats in terms of physical structures, i.e. strong gradients of SST, SSH and a deep mixed layer. This close association with the Gulf Stream frontal system highlights the first substantial synchronization ever observed in this species, as the HRTs were observed in close match with the autumn phytoplankton bloom. Turtles remained within the enriched mixed layer at depths of 38.5±7.9 m when diving in HRT areas, likely to have an easier access to their prey and maximize therefore the energy gain. These depths were shallow in comparison to those attained within the thermocline (82.4±5.6 m) while crossing the nutrient-poor subtropical gyre, probably to reach cooler temperatures and save energy during the transit. In a context of climate change, anticipating the evolution of such frontal structure under the influence of global warming is crucial to ensure the conservation of this vulnerable species.

Assimilation of Satellite Sea Surface Salinity Fields: Validating Ocean Analyses and Identifying Errors in Surface Buoyancy Fluxes

NASA Astrophysics Data System (ADS)

Mehra, A.; Nadiga, S.; Bayler, E. J.; Behringer, D.

2014-12-01

Recently available satellite sea-surface salinity (SSS) fields provide an important new global data stream for assimilation into ocean forecast systems. In this study, we present results from assimilating satellite SSS fields from NASA's Aquarius mission into the National Oceanic and Atmospheric Administration's (NOAA) operational Modular Ocean Model version 4 (MOM4), the oceanic component of NOAA's operational seasonal-interannual Climate Forecast System (CFS). Experiments on the sensitivity of the ocean's overall state to different relaxation time periods were run to evaluate the importance of assimilating high-frequency (daily to mesoscale) and low-frequency (seasonal) SSS variability. Aquarius SSS data (Aquarius Data Processing System (ADPS) version 3.0), mapped daily fields at 1-degree spatial resolution, were used. Four model simulations were started from the same initial ocean condition and forced with NOAA's daily Climate Forecast System Reanalysis (CFSR) fluxes, using a relaxation technique to assimilate daily satellite sea surface temperature (SST) fields and selected SSS fields, where, except as noted, a 30-day relaxation period is used. The simulations are: (1) WOAMC, the reference case and similar to the operational setup, assimilating monthly climatological SSS from the 2009 NOAA World Ocean Atlas; (2) AQ_D, assimilating daily Aquarius SSS; (3) AQ_M, assimilating monthly Aquarius SSS; and (4) AQ_D10, assimilating daily Aquarius SSS, but using a 10-day relaxation period. The analysis focuses on the tropical Pacific Ocean, where the salinity dynamics are intense and dominated by El Niño interannual variability in the cold tongue region and by high-frequency precipitation events in the western Pacific warm pool region. To assess the robustness of results and conclusions, we also examine the results for the tropical Atlantic and Indian Oceans. Preliminary validation studies are conducted using observations, such as satellite sea-surface height (SSH) fields and in situ Argo buoy vertical profiles of temperature and salinity, to demonstrate that SSS data assimilation improves ocean state representation of the following variables: ocean heat content (0-300m), dynamic height (0-1000m), mixed-layer depth, sea surface heigh, and surface buoyancy fluxes.

Heavy-tailed distribution of the SSH Brute-force attack duration in a multi-user environment

NASA Astrophysics Data System (ADS)

Lee, Jae-Kook; Kim, Sung-Jun; Park, Chan Yeol; Hong, Taeyoung; Chae, Huiseung

2016-07-01

Quite a number of cyber-attacks to be place against supercomputers that provide highperformance computing (HPC) services to public researcher. Particularly, although the secure shell protocol (SSH) brute-force attack is one of the traditional attack methods, it is still being used. Because stealth attacks that feign regular access may occur, they are even harder to detect. In this paper, we introduce methods to detect SSH brute-force attacks by analyzing the server's unsuccessful access logs and the firewall's drop events in a multi-user environment. Then, we analyze the durations of the SSH brute-force attacks that are detected by applying these methods. The results of an analysis of about 10 thousands attack source IP addresses show that the behaviors of abnormal users using SSH brute-force attacks are based on human dynamic characteristics of a typical heavy-tailed distribution.

Direct Access to Peregrine for External Users | High-Performance Computing

Science.gov Websites

| NREL Direct Access to Peregrine for External Users Direct Access to Peregrine for External : ssh yourHPCuserid@peregrine-ssh.nrel.gov For more information, please read this page. About direct ssh allow access to VPNs. Our current jump-node (hpcsh.nrel.gov) does not provide direct-to-peregrine access

Simulating multi-scale oceanic processes around Taiwan on unstructured grids

NASA Astrophysics Data System (ADS)

Yu, Hao-Cheng; Zhang, Yinglong J.; Yu, Jason C. S.; Terng, C.; Sun, Weiling; Ye, Fei; Wang, Harry V.; Wang, Zhengui; Huang, Hai

2017-11-01

We validate a 3D unstructured-grid (UG) model for simulating multi-scale processes as occurred in Northwestern Pacific around Taiwan using recently developed new techniques (Zhang et al., Ocean Modeling, 102, 64-81, 2016) that require no bathymetry smoothing even for this region with prevalent steep bottom slopes and many islands. The focus is on short-term forecast for several months instead of long-term variability. Compared with satellite products, the errors for the simulated Sea-surface Height (SSH) and Sea-surface Temperature (SST) are similar to a reference data-assimilated global model. In the nearshore region, comparison with 34 tide gauges located around Taiwan indicates an average RMSE of 13 cm for the tidal elevation. The average RMSE for SST at 6 coastal buoys is 1.2 °C. The mean transport and eddy kinetic energy compare reasonably with previously published values and the reference model used to provide boundary and initial conditions. The model suggests ∼2-day interruption of Kuroshio east of Taiwan during a typhoon period. The effect of tidal mixing is shown to be significant nearshore. The multi-scale model is easily extendable to target regions of interest due to its UG framework and a flexible vertical gridding system, which is shown to be superior to terrain-following coordinates.

Mapping the evidence of prevention and intervention studies for suicidal and self-harming behaviors in young people.

PubMed

De Silva, Stefanie; Parker, Alexandra; Purcell, Rosemary; Callahan, Patrick; Liu, Ping; Hetrick, Sarah

2013-01-01

Suicide and self-harm (SSH) in young people is a major cause of disability-adjusted life years. Effective interventions are of critical importance to reducing the mortality and morbidity associated with SSH. To investigate the extent and nature of research on interventions to prevent and treat SSH in young people using evidence mapping. A systematic search for SSH intervention studies was conducted (participant mean age between 6-25 years). The studies were restricted to high-quality evidence in the form of systematic reviews, meta-analyses, and controlled trials. Thirty-eight controlled studies and six systematic reviews met the study inclusion criteria. The majority (n = 32) involved psychological interventions. Few studies (n = 9) involved treating young people with recognized mental disorders or substance abuse (n = 1) which also addressed SSH. The map was restricted to RCTs, CCTs, systematic reviews, and meta-analyses, and thus might have neglected important information from other study designs. The effectiveness of interventions within the trials was not evaluated. The evidence base for SSH interventions in young people is not well established, which hampers best-practice efforts in this area. Promising interventions that need further research include school-based prevention programs with a skills training component, individual CBT interventions, interpersonal psychotherapy, and attachment-based family therapy. Gaps in the research exist in evaluations of interventions for SSH in young people with identifiable psychopathology, particularly substance use disorder, and research that classifies participants on the basis of their suicidal intent.

Generation of Mesoscale Eddies in the Lee of the Hawaiian Islands

DTIC Science & Technology

2011-11-08

temperature (SST) as observed by the Geostationary Operational Environmental Satellites (GOES, Figure lb, data available at http://oceanwatch.pifsc...hour per response, including the time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and...The SSH is composed of the SSH anomaly from satellite JASON-1 by the AVISO group and the mean SSH of Niiler et al. [2003] (hereafter referred to

Patterns of internationalization and criteria for research assessment in the social sciences and humanities.

PubMed

Sivertsen, Gunnar

This article investigates the developments during the last decades in the use of languages, publication types and publication channels in the social sciences and humanities (SSH). The purpose is to develop an understanding of the processes of internationalization and to apply this understanding in a critical examination of two often used general criteria in research evaluations in the SSH. One of them is that the coverage of a publication in Scopus or Web of Science is seen in itself as an expression of research quality and of internationalization. The other is that a specific international language, English, and a specific type of publication, journal articles, are perceived as supreme in a general hierarchy of languages and publication types. Simple distinctions based on these criteria are contrary to the heterogeneous publication patterns needed in the SSH to organize their research adequately, present their results properly, reach their audiences efficiently, and thereby fulfil their missions. Research quality, internationalization, and societal relevance can be promoted in research assessment in the SSH without categorical hierarchies of publications. I will demonstrate this by using data from scholarly publishing in the SSH that go beyond the coverage in the commercial data sources in order to give a more comprehensive representation of scholarly publishing in the SSH.

Growth, optical, thermal, mechanical and dielectric studies of sodium succinate hexahydrate (β phase) single crystal: A promising third order NLO material

NASA Astrophysics Data System (ADS)

Mageshwari, P. S. Latha; Priya, R.; Krishnan, S.; Joseph, V.; Das, S. Jerome

2016-11-01

A third order nonlinear optical (NLO)single crystals of sodium succinate hexahydrate (SSH) (β phase) has been grown by a slow evaporation growth technique using aqueous solution at ambient temperature. The lattice parameters and morphology of SSH were determined by single crystal X-ray diffraction analysis. SSH crystallizes in centrosymmetric monoclinic system with space group P 21 / c and the crystalline purity was analyzed by powder X-ray diffraction analysis. The UV-vis-NIR spectrum reveals that the crystal is transparent in the entire visible region. The recorded FT-IR spectrum verified the presence of various functional groups in the material. NMR analysis of the grown crystal confirms the structural elucidation and detects the major and minor functional groups present in the title compound. ICP-OES analysis proved the presence of sodium in SSH. TG-DTA/DSCanalysis was used to investigate the thermal stability of the material. The dielectric permittivity and dielectric loss of SSH were carried out as a function of frequency for different temperatures and the results were discussed. The mechanical stability was evaluated from Vicker's microhardness test. The third order nonlinear optical properties of SSH has been investigated employing Z-scan technique with He-Ne laser operating at 632.8 nm wavelength.

Why are social sciences and humanities needed in the works of IPBES? A systematic review of the literature

PubMed Central

Rankovic, Aleksandar; Lapeyre, Renaud

2018-01-01

Despite the increased attention, which has been given to the issue of involving knowledge and experts from the social sciences and humanities (SSH) into the products and works of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (IPBES), little is known on what the expectations towards the involvement of SSH in IPBES actually are. The aim of this paper is to close this gap by identifying the range of possible SSH contributions to IPBES that are expected in the literature, and discuss the inherent challenges of and concrete ways to realize these contributions in the particular institutional setting of IPBES. We address these two points by: firstly, assessing the literature dealing with IPBES and building a typology describing the main ways in which contributions from SSH to IPBES have been conceived between 2006 and 2017. We discuss these expected contributions in light of broader debates on the role of SSH in nature conservation and analyse some of the blind spots and selectivities in the perception of how SSH could substantially contribute to the works of IPBES. Then, secondly, by looking at one particular example, economics and its use in the first thematic assessment on pollinators, pollination and food production, we will concretely illustrate how works in a given discipline could contribute in many different and unprecedented ways to the works of IPBES and help identify paths for enhancing the conservation of biodiversity. Finally, we propose a range of practical recommendations as to how to increase the contribution of SSH in the works of IPBES. PMID:29706803

Two-leg Su-Schrieffer-Heeger chain with glide reflection symmetry

NASA Astrophysics Data System (ADS)

Zhang, Shao-Liang; Zhou, Qi

2017-06-01

The Su-Schrieffer-Heeger (SSH) model lays the foundation of many important concepts in quantum topological matters. Here, we show that a spin-dependent double-well optical lattice allows one to couple two topologically distinct SSH chains in the bulk and realize a glided-two-leg SSH model that respects the glide reflection symmetry. Such a model gives rise to intriguing quantum phenomena beyond the paradigm of a traditional SSH model. It is characterized by Wilson lines that require non-Abelian Berry connections, and the interplay between the glide symmetry and interaction automatically leads to charge fractionalization without jointing two lattice potentials at an interface. Our work demonstrates the versatility of ultracold atoms to create new theoretical models for studying topological matters.

Thrombin selectively engages LIM kinase 1 and slingshot-1L phosphatase to regulate NF-κB activation and endothelial cell inflammation

PubMed Central

Leonard, Antony; Marando, Catherine; Rahman, Arshad

2013-01-01

Endothelial cell (EC) inflammation is a central event in the pathogenesis of many pulmonary diseases such as acute lung injury and its more severe form acute respiratory distress syndrome. Alterations in actin cytoskeleton are shown to be crucial for NF-κB regulation and EC inflammation. Previously, we have described a role of actin binding protein cofilin in mediating cytoskeletal alterations essential for NF-κB activation and EC inflammation. The present study describes a dynamic mechanism in which LIM kinase 1 (LIMK1), a cofilin kinase, and slingshot-1Long (SSH-1L), a cofilin phosphatase, are engaged by procoagulant and proinflammatory mediator thrombin to regulate these responses. Our data show that knockdown of LIMK1 destabilizes whereas knockdown of SSH-1L stabilizes the actin filaments through modulation of cofilin phosphorylation; however, in either case thrombin-induced NF-κB activity and expression of its target genes (ICAM-1 and VCAM-1) is inhibited. Further mechanistic analyses reveal that knockdown of LIMK1 or SSH-1L each attenuates nuclear translocation and thereby DNA binding of RelA/p65. In addition, LIMK1 or SSH-1L depletion inhibited RelA/p65 phosphorylation at Ser536, a critical event conferring transcriptional competency to the bound NF-κB. However, unlike SSH-1L, LIMK1 knockdown also impairs the release of RelA/p65 by blocking IKKβ-dependent phosphorylation/degradation of IκBα. Interestingly, LIMK1 or SSH-1L depletion failed to inhibit TNF-α-induced RelA/p65 nuclear translocation and proinflammatory gene expression. Thus this study provides evidence for a novel role of LIMK1 and SSH-1L in selectively regulating EC inflammation associated with intravascular coagulation. PMID:24039253

Thrombin selectively engages LIM kinase 1 and slingshot-1L phosphatase to regulate NF-κB activation and endothelial cell inflammation.

PubMed

Leonard, Antony; Marando, Catherine; Rahman, Arshad; Fazal, Fabeha

2013-11-01

Endothelial cell (EC) inflammation is a central event in the pathogenesis of many pulmonary diseases such as acute lung injury and its more severe form acute respiratory distress syndrome. Alterations in actin cytoskeleton are shown to be crucial for NF-κB regulation and EC inflammation. Previously, we have described a role of actin binding protein cofilin in mediating cytoskeletal alterations essential for NF-κB activation and EC inflammation. The present study describes a dynamic mechanism in which LIM kinase 1 (LIMK1), a cofilin kinase, and slingshot-1Long (SSH-1L), a cofilin phosphatase, are engaged by procoagulant and proinflammatory mediator thrombin to regulate these responses. Our data show that knockdown of LIMK1 destabilizes whereas knockdown of SSH-1L stabilizes the actin filaments through modulation of cofilin phosphorylation; however, in either case thrombin-induced NF-κB activity and expression of its target genes (ICAM-1 and VCAM-1) is inhibited. Further mechanistic analyses reveal that knockdown of LIMK1 or SSH-1L each attenuates nuclear translocation and thereby DNA binding of RelA/p65. In addition, LIMK1 or SSH-1L depletion inhibited RelA/p65 phosphorylation at Ser(536), a critical event conferring transcriptional competency to the bound NF-κB. However, unlike SSH-1L, LIMK1 knockdown also impairs the release of RelA/p65 by blocking IKKβ-dependent phosphorylation/degradation of IκBα. Interestingly, LIMK1 or SSH-1L depletion failed to inhibit TNF-α-induced RelA/p65 nuclear translocation and proinflammatory gene expression. Thus this study provides evidence for a novel role of LIMK1 and SSH-1L in selectively regulating EC inflammation associated with intravascular coagulation.

[Construction and analysis of a forward and reverse subtractive cDNA library from leaves and stem of Polygonum sibiricum Laxm. under salt stress].

PubMed

Liu, Guan-Jun; Liu, Ming-Kun; Xu, Zhi-Ru; Yan, Xiu-Feng; Wei, Zhi-Gang; Yang, Chuan-Ping

2009-04-01

Using cDNAs prepared from the leaves and stems of Polygonum sibiricum Laxm. treated with NaHCO3 stress for 48 h as testers and cDNAs from unstressed P. sibiricum leaves and stems as drivers library, suppression subtractive hybridization (SSH) was employed to construct a cDNA subtracted library, which contained 2 282 valid sequences including 598 ESTs in the stems forward SSH library and 490 ESTs in the stem reverse SSH library, 627 ESTs in the leaf forward SSH library and 567 in the leaf reverse SSH library. According to the functional catalogue of MIPs and the comparison of the reverse and forward SSH libraries of the stem and leaf, the responses to NaHCO3 stress were different between leaf and stem, except for the same trend in cell rescue defense and transport facilitation. The trend in the metabolism, energy, photosynthesis, protein synthesis, transcription, and signal transduction was opposite. RT-PCR analysis demonstrated that the expression of 12 putative stress related genes in the NaHCO3-treated leaves and stems was different from that in the untreated leaves and stems. This indicated that different mechanisms might be responsible for reactions of leaf and stem in P. sibiricum. The results from this study are useful in understanding the molecular mechanism of saline-alkali tolerance in P. sibiricum.

Anthropometric evaluation and recommendation for primary schools classroom furniture design in Perlis

NASA Astrophysics Data System (ADS)

Shan, Lim Shaiu; Jing, Ewe Hui; Effendi, M. S. M.; Rosli, Muhamad Farizuan

2017-09-01

This study was carried out with the objective to obtain the anthropometric data of primary school children from Year 1 to Year 6 and evaluate the children's anthropometry with the current dimensions of classroom furniture (i.e. chair and table). In addition, this study also proposed the design dimensions for the improvement in classroom furniture design with the consideration of children's anthropometric data. A total of 390 children selected from 13 primary schools in Perlis, Malaysia were participated in this study. There were 11 anthropometric measurements of children have been measured in this study, which include stature (St), popliteal height (PH), knee height (KH), thigh thickness (TT), buttock popliteal length (BPL), hip breadth (HB), sitting shoulder height (SSH), sitting elbow height (SEH), forearm-hand length (FHL), height of lumbar point (HLP) and buttock clearance (BC). Besides that, 7 dimensions relating to current classroom chair have been measured, such as seat height (SH), seat depth (SD), seat width (SW), upper edge of backrest (UEB), lower edge of backrest (LEB), S point (SP), overall chair height (OCH). Another 5 dimensions of the existing classroom table have been measured too, which involve table height (TH), table depth (TD), table width (TW), under table height (UH) and seat to table clearance (STC). All the measurements were performed by using metal measuring tape. The anthropometric data of the children were analyzed with the help of Microsoft Excel 2013. Several equations with associated with the anthropometric data and furniture dimensions have been applied in this research. The new design dimensions for classroom furniture that proposed in this paper which based on the collected anthropometric data can be referred as a guideline for classroom furniture design. The implementation of these data may help to create comfortability, safety, suitability and improve performance of children in the classroom.

Data Quality Assessment of In Situ and Altimeter Observations Through Two-Way Intercomparison Methods

NASA Astrophysics Data System (ADS)

Guinehut, Stephanie; Valladeau, Guillaume; Legeais, Jean-Francois; Rio, Marie-Helene; Ablain, Michael; Larnicol, Gilles

2013-09-01

This proceeding presents an overview of the two-way inter-comparison activities performed at CLS for both space and in situ observation agencies and why this activity is a required step to obtain accurate and homogenous data sets that can then be used together for climate studies or in assimilation/validation tools. We first describe the work performed in the frame of the SALP program to assess the stability of altimeter missions through SSH comparisons with tide gauges (GLOSS/CLIVAR network). Then, we show how the SSH comparison between the Argo array and altimeter time series allows the detection of drifts or jumps in altimeter (SALP program) but also for some Argo floats (Ifremer/Coriolis center). Lastly, we describe how the combine use of altimeter and wind observations helps the detection of drogue loss of surface drifting buoys (GDP network) and allow the computation of a correction term for wind slippage.

Predictability of Subsurface Temperature and the AMOC

NASA Astrophysics Data System (ADS)

Chang, Y.; Schubert, S. D.

2013-12-01

GEOS 5 coupled model is extensively used for experimental decadal climate prediction. Understanding the limits of decadal ocean predictability is critical for making progress in these efforts. Using this model, we study the subsurface temperature initial value predictability, the variability of the Atlantic meridional overturning circulation (AMOC) and its impacts on the global climate. Our approach is to utilize the idealized data assimilation technology developed at the GMAO. The technique 'replay' allows us to assess, for example, the impact of the surface wind stresses and/or precipitation on the ocean in a very well controlled environment. By running the coupled model in replay mode we can in fact constrain the model using any existing reanalysis data set. We replay the model constraining (nudging) it to the MERRA reanalysis in various fields from 1948-2012. The fields, u,v,T,q,ps, are adjusted towards the 6-hourly analyzed fields in atmosphere. The simulated AMOC variability is studied with a 400-year-long segment of replay integration. The 84 cases of 10-year hindcasts are initialized from 4 different replay cycles. Here, the variability and predictability are examined further by a measure to quantify how much the subsurface temperature and AMOC variability has been influenced by atmospheric forcing and by ocean internal variability. The simulated impact of the AMOC on the multi-decadal variability of the SST, sea surface height (SSH) and sea ice extent is also studied.

Ensemble data assimilation in the Red Sea: sensitivity to ensemble selection and atmospheric forcing

NASA Astrophysics Data System (ADS)

Toye, Habib; Zhan, Peng; Gopalakrishnan, Ganesh; Kartadikaria, Aditya R.; Huang, Huang; Knio, Omar; Hoteit, Ibrahim

2017-07-01

We present our efforts to build an ensemble data assimilation and forecasting system for the Red Sea. The system consists of the high-resolution Massachusetts Institute of Technology general circulation model (MITgcm) to simulate ocean circulation and of the Data Research Testbed (DART) for ensemble data assimilation. DART has been configured to integrate all members of an ensemble adjustment Kalman filter (EAKF) in parallel, based on which we adapted the ensemble operations in DART to use an invariant ensemble, i.e., an ensemble Optimal Interpolation (EnOI) algorithm. This approach requires only single forward model integration in the forecast step and therefore saves substantial computational cost. To deal with the strong seasonal variability of the Red Sea, the EnOI ensemble is then seasonally selected from a climatology of long-term model outputs. Observations of remote sensing sea surface height (SSH) and sea surface temperature (SST) are assimilated every 3 days. Real-time atmospheric fields from the National Center for Environmental Prediction (NCEP) and the European Center for Medium-Range Weather Forecasts (ECMWF) are used as forcing in different assimilation experiments. We investigate the behaviors of the EAKF and (seasonal-) EnOI and compare their performances for assimilating and forecasting the circulation of the Red Sea. We further assess the sensitivity of the assimilation system to various filtering parameters (ensemble size, inflation) and atmospheric forcing.

New Perspectives on Southern Ocean Frontal Variability

NASA Astrophysics Data System (ADS)

Chapman, Christopher

2017-04-01

The frontal structure of the Southern Ocean is investigated using a the Wavelet/Higher Order Statistics Enhancement (WHOSE) frontal detection method, introduced in Chapman (2014). This methodology is applied to 21 years of daily gridded sea-surface height (SSH) data to obtain daily maps of the locations of the fronts. By forming frontal occurrence frequency maps and then approximating these occurrence-maps by a superposition of simple functions, the time-mean locations of the fronts, as well as a measure of their capacity to meander, are obtained and related to the frontal locations found by previous studies. The spatial and temporal variability of the frontal structure is then considered. The number of fronts is found to be highly variable throughout the Southern Ocean, increasing (`splitting') downstream of large bathymetric features and decreasing (`merging') in regions where the fronts are tightly controlled by the underlying topography. In contrast, frontal meandering remains relatively constant. Contrary to many previous studies, little no southward migration of the fronts over the 1993-2014 time period is found, and there is only weak sensitivity to atmospheric forcing related to SAM or ENSO. Finally, the implications of splitting and merging for the flux of tracers will be discussed.

Southern Ocean Eddy Heat Flux and Eddy-Mean Flow Interactions in Drake Passage

NASA Astrophysics Data System (ADS)

Foppert, Annie

The Antarctic Circumpolar Current (ACC) is a complex current system composed of multiple jets that is both unique to the world's oceans and relatively under observed compared with other current systems. Observations taken by current- and pressure-recording inverted echo sounders (CPIES) over four years, from November 2007 to November 2011, quantify the mean structure of one of the main jets of the ACC - the Polar Front - in a composite-mean sense. While the array of CPIES deployed in Drake Passage included a 3 x 7 local dynamics array, analysis of the Polar Front makes use of the line of CPIES that spanned the width of Drake Passage (C-Line). The Polar Front tends to prefer one of two locations, separated along the C-Line by 1° of latitude, with the core of the jet centered on corresponding geopotential height contours (with a 17 cm dierence between the northern and southern jets). Potential vorticity fields suggest that the Polar Front is susceptible to baroclinic instability, regardless of whether it is found upstream (farther south along the C-Line) or downstream (farther north along the C-Line) of the Shackleton Fracture Zone (SFZ), yet the core of the jet remains a barrier to smaller-scale mixing, as inferred from estimated mixing lengths. Within the local dynamics array of CPIES, the observed offset between eddy heat flux (EHF) and eddy kinetic energy (EKE) and the alignment of EHF with sea surface height (SSH) standard deviation motivates a proxy for depth-integrated EHF that can be estimated from available satellite SSH data. An eddy-resolving numerical model develops the statistics of a logarithmic fit between SSH standard deviation and cross-frontal EHF that is applied to the ACC in a circumglobal sense. We find 1.06 PW enters the ACC from the north and 0.02 PW exits towards Antarctica. The magnitude of the estimated EHF, along with contemporaneous estimates of the mean heat flux, suggests that the air-sea heat flux south of the PF is an overestimate. Long-term trends in EHF are calculated from January 1992 to December 2014 and reveal varying trends at the eight ACC EHF hot spots, with only three having statistically significant temporal trends of strengthening cross-frontal EHF. The dynamics of an oceanic storm track are investigated using CPIES observations in the local dynamics array to better understand the processes responsible for the spatial oset between EHF and EKE. Wave activity flux ( W), calculated from the total geostrophic stream-function, is used to diagnose eddy-mean flow interactions in the eddy-rich region immediately downstream of the SFZ. In the full four-year mean and in a composite of eddy events, elevated values of eddy potential energy (EPE) are aligned with the vertical component of W. This is indicative of a conversion of mean available potential energy to EPE through EHF associated with baroclinic instability. Emanating from this region, horizontal W vectors point towards the adjacent region of elevated EKE. A case study of an eddy event, lasting from 15 to 23 July 2010, is presented and highlights the capability of W to illustrate the evolution of the storm track in a snap-shot sense. While baroclinic processes initially dominate the event, the alignment of elevated values of EKE with the convergence of the horizontal W vectors indicates the importance of barotropic processes in transporting EKE away from the ACC's interaction with the SFZ.

Overexpression of EAR1 and SSH4 that encode PPxY proteins in the multivesicular body provides stability to tryptophan permease Tat2, allowing yeast cells to grow under high hydrostatic pressure

NASA Astrophysics Data System (ADS)

Hiraki, Toshiki; Usui, Keiko; Abe, Fumiyoshi

2010-12-01

Tryptophan uptake in yeast Saccharomyces cerevisiae is susceptible to high hydrostatic pressure and it limits the growth of tryptophan auxotrophic (Trp-) strains under pressures of 15-25 MPa. The susceptibility of tryptophan uptake is accounted for by the pressure-induced degradation of tryptophan permease Tat2 occurring in a Rsp5 ubiquitin ligase-dependent manner. Ear1 and Ssh4 are multivesicular body proteins that physically interact with Rsp5. We found that overexpression of either of the EAR1 or SSH4 genes enabled the Trp- cells to grow at 15-25 MPa. EAR1 and SSH4 appeared to provide stability to the Tat2 protein when overexpressed. The result suggests that Ear1 and Ssh4 negatively regulate Rsp5 on ubiquitination of Tat2. Currently, high hydrostatic pressure is widely used in bioscience and biotechnology for structurally perturbing macromolecules such as proteins and lipids or in food processing and sterilizing microbes. We suggest that hydrostatic pressure is an operative experimental parameter to screen yeast genes specifically for regulation of Tat2 through the function of Rsp5 ubiquitin ligase.

Research ethics in the dynamic of scientific field: challenges in the building of guidelines for social sciences and humanities.

PubMed

Guerriero, Iara Coelho Zito; Bosi, Maria Lúcia Magalhães

2015-09-01

The development of guidelines on research ethics for social science and humanities (SSH) takes place in the scientific field, marked by disputes aimed at the establishment of hegemonic scientific standard. In Brazil, the National Health Council is responsible for approving these guidelines, which involve certain specificities. Based on the authors' experience in the SSH Working Group of the National Commission on Research Ethics (GT CHS / CONEP), this article presents the process of development of guidelines for SSH, and some its challenges: the distance between the statutory guarantee and the effective execution of guidelines; the biomedical hegemony and the marginal position of the SSH in the CEP / CONEP system; the inadequacy of the current resolution facing the research features in CHS; the use of the concept of risk in guidelines aimed at SSH in the health area. Some interfaces and tensions in the debate between scientific merit and ethical evaluation are also discussed. The analysis highlights important impasses and difficulties regarding inter-paradigmatic dialogue in health research, considered the characteristics of the different traditions, the CONEP's heavily relying on the positivist perspective and the defense of that paradigm hegemony.

Redox Signaling Regulated by Cysteine Persulfide and Protein Polysulfidation.

PubMed

Kasamatsu, Shingo; Nishimura, Akira; Morita, Masanobu; Matsunaga, Tetsuro; Abdul Hamid, Hisyam; Akaike, Takaaki

2016-12-15

For decades, reactive persulfide species including cysteine persulfide (CysSSH) have been known to exist endogenously in organisms. However, the physiological significance of endogenous persulfides remains poorly understood. That cystathionine β-synthase and cystathionine γ-lyase produced CysSSH from cystine was recently demonstrated. An endogenous sulfur transfer system involving CysSSH evidently generates glutathione persulfide (GSSH) that exists at concentrations greater than 100 μM in vivo. Because reactive persulfide species such as CysSSH and GSSH have higher nucleophilicity than parental cysteine (Cys) and glutathione do, these reactive species exhibit strong scavenging activities against oxidants, e.g., hydrogen peroxide, and electrophiles, which contributes to redox signaling regulation. Also, several papers indicated that various proteins and enzymes have Cys polysulfides including CysSSH at their specific Cys residues, which is called protein polysulfidation. Apart from the redox signaling regulatory mechanism, another plausible function of protein polysulfidation is providing protection for protein thiol residues against irreversible chemical modification caused by oxidants and electrophiles. Elucidation of the redox signaling regulatory mechanism of reactive persulfide species including small thiol molecules and thiol-containing proteins should lead to the development of new therapeutic strategies and drug discoveries for oxidative and electrophilic stress-related diseases.

Protein-phosphotyrosine proteome profiling by superbinder-SH2 domain affinity purification mass spectrometry, sSH2-AP-MS.

PubMed

Tong, Jiefei; Cao, Biyin; Martyn, Gregory D; Krieger, Jonathan R; Taylor, Paul; Yates, Bradley; Sidhu, Sachdev S; Li, Shawn S C; Mao, Xinliang; Moran, Michael F

2017-03-01

Recently, "superbinder" SH2 domain variants with three amino acid substitutions (sSH2) were reported to have 100-fold or greater affinity for protein-phosphotyrosine (pY) than natural SH2 domains. Here we report a protocol in which His-tagged Src sSH2 efficiently captures pY-peptides from protease-digested HeLa cell total protein extracts. Affinity purification of pY-peptides by this method shows little bias for pY-proximal amino acid sequences, comparable to that achieved by using antibodies to pY, but with equal or higher yield. Superbinder-SH2 affinity purification mass spectrometry (sSH2-AP-MS) therefore provides an efficient and economical approach for unbiased pY-directed phospho-proteome profiling without the use of antibodies. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Immune-Related Transcriptome of Coptotermes formosanus Shiraki Workers: The Defense Mechanism

PubMed Central

Hussain, Abid; Li, Yi-Feng; Cheng, Yu; Liu, Yang; Chen, Chuan-Cheng; Wen, Shuo-Yang

2013-01-01

Formosan subterranean termites, Coptotermes formosanus Shiraki, live socially in microbial-rich habitats. To understand the molecular mechanism by which termites combat pathogenic microbes, a full-length normalized cDNA library and four Suppression Subtractive Hybridization (SSH) libraries were constructed from termite workers infected with entomopathogenic fungi (Metarhizium anisopliae and Beauveria bassiana), Gram-positive Bacillus thuringiensis and Gram-negative Escherichia coli, and the libraries were analyzed. From the high quality normalized cDNA library, 439 immune-related sequences were identified. These sequences were categorized as pattern recognition receptors (47 sequences), signal modulators (52 sequences), signal transducers (137 sequences), effectors (39 sequences) and others (164 sequences). From the SSH libraries, 27, 17, 22 and 15 immune-related genes were identified from each SSH library treated with M. anisopliae, B. bassiana, B. thuringiensis and E. coli, respectively. When the normalized cDNA library was compared with the SSH libraries, 37 immune-related clusters were found in common; 56 clusters were identified in the SSH libraries, and 259 were identified in the normalized cDNA library. The immune-related gene expression pattern was further investigated using quantitative real time PCR (qPCR). Important immune-related genes were characterized, and their potential functions were discussed based on the integrated analysis of the results. We suggest that normalized cDNA and SSH libraries enable us to discover functional genes transcriptome. The results remarkably expand our knowledge about immune-inducible genes in C. formosanus Shiraki and enable the future development of novel control strategies for the management of Formosan subterranean termites. PMID:23874972

Increased actin polymerization and stabilization interferes with neuronal function and survival in the AMPKγ mutant Loechrig.

PubMed

Cook, Mandy; Bolkan, Bonnie J; Kretzschmar, Doris

2014-01-01

loechrig (loe) mutant flies are characterized by progressive neuronal degeneration, behavioral deficits, and early death. The mutation is due to a P-element insertion in the gene for the γ-subunit of the trimeric AMP-activated protein kinase (AMPK) complex, whereby the insertion affects only one of several alternative transcripts encoding a unique neuronal isoform. AMPK is a cellular energy sensor that regulates a plethora of signaling pathways, including cholesterol and isoprenoid synthesis via its downstream target hydroxy-methylglutaryl (HMG)-CoA reductase. We recently showed that loe interferes with isoprenoid synthesis and increases the prenylation and thereby activation of RhoA. During development, RhoA plays an important role in neuronal outgrowth by activating a signaling cascade that regulates actin dynamics. Here we show that the effect of loe/AMPKγ on RhoA prenylation leads to a hyperactivation of this signaling pathway, causing increased phosphorylation of the actin depolymerizating factor cofilin and accumulation of filamentous actin. Furthermore, our results show that the resulting cytoskeletal changes in loe interfere with neuronal growth and disrupt axonal integrity. Surprisingly, these phenotypes were enhanced by expressing the Slingshot (SSH) phosphatase, which during development promotes actin depolymerization by dephosphorylating cofilin. However, our studies suggest that in the adult SSH promotes actin polymerization, supporting in vitro studies using human SSH1 that suggested that SSH can also stabilize and bundle filamentous actin. Together with the observed increase in SSH levels in the loe mutant, our experiments suggest that in mature neurons SSH may function as a stabilization factor for filamentous actin instead of promoting actin depolymerization.

Using ParaView Software on the Peregrine System | High-Performance

Science.gov Websites

come pre-installed on most Linux and Mac systems. On Windows the ssh and terminal functions are provided by the programs plink.exe and cmd.exe, of which only cmd.exe will come pre-installed. The ssh

Subtractive transcriptome analysis of leaf and rhizome reveals differentially expressed transcripts in Panax sokpayensis.

PubMed

Gurung, Bhusan; Bhardwaj, Pardeep K; Talukdar, Narayan C

2016-11-01

In the present study, suppression subtractive hybridization (SSH) strategy was used to identify rare and differentially expressed transcripts in leaf and rhizome tissues of Panax sokpayensis. Out of 1102 randomly picked clones, 513 and 374 high quality expressed sequenced tags (ESTs) were generated from leaf and rhizome subtractive libraries, respectively. Out of them, 64.92 % ESTs from leaf and 69.26 % ESTs from rhizome SSH libraries were assembled into different functional categories, while others were of unknown function. In particular, ESTs encoding galactinol synthase 2, ribosomal RNA processing Brix domain protein, and cell division cycle protein 20.1, which are involved in plant growth and development, were most abundant in the leaf SSH library. Other ESTs encoding protein KIAA0664 homologue, ubiquitin-activating enzyme e11, and major latex protein, which are involved in plant immunity and defense response, were most abundant in the rhizome SSH library. Subtractive ESTs also showed similarity with genes involved in ginsenoside biosynthetic pathway, namely farnesyl pyrophosphate synthase, squalene synthase, and dammarenediol synthase. Expression profiles of selected ESTs validated the quality of libraries and confirmed their differential expression in the leaf, stem, and rhizome tissues. In silico comparative analyses revealed that around 13.75 % of unigenes from the leaf SSH library were not represented in the available leaf transcriptome of Panax ginseng. Similarly, around 18.12, 23.75, 25, and 6.25 % of unigenes from the rhizome SSH library were not represented in available root/rhizome transcriptomes of P. ginseng, Panax notoginseng, Panax quinquefolius, and Panax vietnamensis, respectively, indicating a major fraction of novel ESTs. Therefore, these subtractive transcriptomes provide valuable resources for gene discovery in P. sokpayensis and would complement the available transcriptomes from other Panax species.

A comparison of remote vs. local influence of El Niño on the coastal circulation of the northeast Pacific

NASA Astrophysics Data System (ADS)

Hermann, Albert J.; Curchitser, Enrique N.; Haidvogel, Dale B.; Dobbins, Elizabeth L.

2009-12-01

A set of spatially nested circulation models is used to explore interannual change in the northeast Pacific (NEP) during 1997-2002, and remote vs. local influence of the 1997-1998 El Niño on this region. Our nested set is based on the primitive equations of motion, and includes a basin-scale model of the north Pacific at ˜40-km resolution (NPac), and a regional model of the Northeast Pacific at ˜10-km resolution. The NEP model spans an area from Baja California through the Bering Sea, from the coast to ˜2000-km offshore. In this context, "remote influence" refers to effects driven by changes in ocean velocity and temperature outside of the NEP domain; "local influence" refers to direct forcing by winds and runoff within the NEP domain. A base run of this model using hindcast winds and runoff for 1996-2002 replicates the dominant spatial modes of sea-surface height anomalies from satellite data, and coastal sea level from tide gauges. We have performed a series of sensitivity runs with the NEP model for 1997-1998, which analyze the response of coastal sea level to: (1) hindcast winds and coastal runoff, as compared to their monthly climatologies and (2) hindcast boundary conditions (from the NPac model), as compared to their monthly climatologies. Results indicate penetration of sea-surface height (SSH) from the basin-scale model into the NEP domain (e.g., remote influence), with propagation as coastal trapped waves from Baja up through Alaska. Most of the coastal sea-level anomaly off Alaska in El Niño years appears due to direct forcing by local winds and runoff (local influence), and such anomalies are much stronger than those produced off California. We quantify these effects as a function of distance along the coastline, and consider how they might impact the coastal ecosystems of the NEP.

A programmable, multichannel power supply for SIPMs with temperature compensation loop and Ethernet interface

NASA Astrophysics Data System (ADS)

Querol, M.; Rodríguez, J.; Toledo, J.; Esteve, R.; Álvarez, V.; Herrero, V.

2016-12-01

Among the different techniques available, the SiPM power supply described in this paper uses output voltage and sensor temperature feedback. A high-resolution ADC digitizes both the output voltage and an analog signal proportional to the SiPM temperature for each of its 16 independent outputs. The appropriate change in the bias voltage is computed in a micro-controller and this correction is applied via a high resolution DAC to the control input of a DC/DC module that produces the output voltage. This method allows a reduction in gain variations from typically 30% to only 0.5% in a 10 °C range. The power supply is housed in a 3U-height aluminum box. A 2.8'' touch screen on the front panel provides local access to the configuration and monitoring functions using a graphical interface. The unit has an Ethernet interface on its rear side to provide remote operation and integration in slow control systems using the encrypted and secure SSH protocol. A LabVIEW application with SSH interface has been designed to operate the power supply from a remote computer. The power supply has good characteristics, such as 85 V output range with 1 mV resolution and stability better than 2 mVP, excellent output load regulation and programmable rise and fall voltage ramps. Commercial power supplies from well-known manufacturers can show far better specifications though can also result in an over featured and over costly solution for typical applications.

Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States)

PubMed Central

Bowers, John C.; Griffitt, Kimberly J.; Molina, Vanessa; Clostio, Rachel W.; Pei, Shaofeng; Laws, Edward; Paranjpye, Rohinee N.; Strom, Mark S.; Chen, Arlene; Hasan, Nur A.; Huq, Anwar; Noriea, Nicholas F.; Grimes, D. Jay; Colwell, Rita R.

2012-01-01

Vibrio parahaemolyticus and Vibrio vulnificus, which are native to estuaries globally, are agents of seafood-borne or wound infections, both potentially fatal. Like all vibrios autochthonous to coastal regions, their abundance varies with changes in environmental parameters. Sea surface temperature (SST), sea surface height (SSH), and chlorophyll have been shown to be predictors of zooplankton and thus factors linked to vibrio populations. The contribution of salinity, conductivity, turbidity, and dissolved organic carbon to the incidence and distribution of Vibrio spp. has also been reported. Here, a multicoastal, 21-month study was conducted to determine relationships between environmental parameters and V. parahaemolyticus and V. vulnificus populations in water, oysters, and sediment in three coastal areas of the United States. Because ecologically unique sites were included in the study, it was possible to analyze individual parameters over wide ranges. Molecular methods were used to detect genes for thermolabile hemolysin (tlh), thermostable direct hemolysin (tdh), and tdh-related hemolysin (trh) as indicators of V. parahaemolyticus and the hemolysin gene vvhA for V. vulnificus. SST and suspended particulate matter were found to be strong predictors of total and potentially pathogenic V. parahaemolyticus and V. vulnificus. Other predictors included chlorophyll a, salinity, and dissolved organic carbon. For the ecologically unique sites included in the study, SST was confirmed as an effective predictor of annual variation in vibrio abundance, with other parameters explaining a portion of the variation not attributable to SST. PMID:22865080

Universities and Smart Specialisation Strategy: From Third Mission to Sustainable Development Co-Creation

ERIC Educational Resources Information Center

Rinaldi, Chiara; Cavicchi, Alessio; Spigarelli, Francesca; Lacchè, Luigi; Rubens, Arthur

2018-01-01

Purpose: The paper analyses the emerging role of Social Sciences and Humanities (SSH) universities in contemporary society via third- and fourth-mission activities. In particular, the paper investigates the potential contributions that SSH universities can offer in developing and enhancing capacities, supporting the changing conception of…

SSH reveals a linkage between a senescence-associated protease and Verticillium wilt symptom development in lettuce (Lactuca sativa)

USDA-ARS?s Scientific Manuscript database

Suppression subtractive hybridization (SSH) was employed to identify lettuce (Lactuca sativa) genes that are differentially expressed in symptomatic leaves infected with Verticillium dahliae. Genes expressed only in symptomatic leaves included those with homology to pathogenesis-related (PR) protei...

Automated detection of Lagrangian eddies and coherent transport of heat and salinity in the Agulhas leakage

NASA Astrophysics Data System (ADS)

Huhn, Florian; Haller, George

2014-05-01

Haller and Beron-Vera(2013) have recently introduced a new objective method to detect coherent Lagrangian eddies in turbulence. They find that closed null-geodesics of a generalized Green-Lagrange strain tensor act as coherent Lagrangian eddy boundaries, showing near-zero and uniform material stretching. We make use of this method to develop an automated detection procedure for coherent Lagrangian eddies in large-scale ocean data. We apply our results to a recent 3D general circulation model, the Southern Ocean State Estimate (SOSE), with focus on the South Atlantic Ocean and the inter-ocean exchange between the Indian and Atlantic ocean. We detect a large number of coherent Lagrangian eddies and present statistics of their properties. The largest and most circular eddy boundaries represent Lagrangian Agulhas rings. Circular regions inside these rings with higher temperature and salinity than the surrounding waters can be explained by the coherent eddy boundaries that enclose and isolate the eddy interiors. We compare eddy boundaries at different depths with eddy boundaries obtained from geostrophic velocities derived from the model's sea surface height (SSH). The transport of mass, heat and salinity enclosed by coherent eddies through a section in the Cape basin is quantified and compared to the non-coherent transport by the background flow.

The Occurrence of Tidal Hybrid Kelvin-Edge Waves in the Global Ocean

NASA Astrophysics Data System (ADS)

Kaur, H.; Buijsman, M. C.; Yankovsky, A. E.; Zhang, T.; Jeon, C. H.

2017-12-01

This study presents the analysis of hybrid Kelvin-edge waves on the continental shelves in a global ocean model. Our objective is to find areas where the transition occurs from Kelvin waves to hybrid Kelvin-edge waves. The change in continental shelf width may convert a Kelvin wave into a hybrid Kelvin-edge wave. In this process the group velocity reaches a minimum and tidal energy is radiated on and/or offshore [Zhang 2016]. We extract M2 SSH (Sea Surface Height) and velocity from the Hybrid Coordinate Ocean Model (HYCOM) and calculate barotropic energy fluxes. We analyze these three areas: the Bay of Biscay, the Amazon Shelf and North West Africa. In these three regions, the continental shelf widens in the propagation direction and the alongshore flux changes its direction towards the coast. A transect is taken at different points in these areas to compute the dispersion relations of the waves on the continental shelf. In model simulations, we change the bathymetry of the Bay of Biscay to study the behavior of the hybrid Kelvin-edge waves. BibliographyZhang, T., and A. E Yankovsky. (2016), On the nature of cross-isobath energy fluxes in topographically modified barotropic semidiurnal Kelvin waves, J. Geophys. Res. Oceans, 121, 3058-3074, doi:10.1002/2015JC011617.

Safety surrogate histograms (SSH): A novel real-time safety assessment of dilemma zone related conflicts at signalized intersections.

PubMed

Ghanipoor Machiani, Sahar; Abbas, Montasir

2016-11-01

Drivers' indecisiveness in dilemma zones (DZ) could result in crash-prone situations at signalized intersections. DZ is to the area ahead of an intersection in which drivers encounter a dilemma regarding whether to stop or proceed through the intersection when the signal turns yellow. An improper decision to stop by the leading driver, combined with the following driver deciding to go, can result in a rear-end collision, unless the following driver recognizes a collision is imminent and adjusts his or her behavior at or shortly after the onset of yellow. Considering the significance of DZ-related crashes, a comprehensive safety measure is needed to characterize the level of safety at signalized intersections. In this study, a novel safety surrogate measure was developed utilizing real-time radar field data. This new measure, called safety surrogate histogram (SSH), captures the degree and frequency of DZ-related conflicts at each intersection approach. SSH includes detailed information regarding the possibility of crashes, because it is calculated based on the vehicles conflicts. An example illustrating the application of the new methodology at two study sites in Virginia is presented and discussed, and a comparison is provided between SSH and other DZ-related safety surrogate measures mentioned in the literature. The results of the study reveal the efficacy of the SSH as complementary to existing surrogate measures. Copyright © 2015 Elsevier Ltd. All rights reserved.

SSh versus TSE sequence protocol in rapid MR examination of pediatric patients with programmable drainage system.

PubMed

Brichtová, Eva; Šenkyřík, J

2017-05-01

A low radiation burden is essential during diagnostic procedures in pediatric patients due to their high tissue sensitivity. Using MR examination instead of the routinely used CT reduces the radiation exposure and the risk of adverse stochastic effects. Our retrospective study evaluated the possibility of using ultrafast single-shot (SSh) sequences and turbo spin echo (TSE) sequences in rapid MR brain imaging in pediatric patients with hydrocephalus and a programmable ventriculoperitoneal drainage system. SSh sequences seem to be suitable for examining pediatric patients due to the speed of using this technique, but significant susceptibility artifacts due to the programmable drainage valve degrade the image quality. Therefore, a rapid MR examination protocol based on TSE sequences, less sensitive to artifacts due to ferromagnetic components, has been developed. Of 61 pediatric patients who were examined using MR and the SSh sequence protocol, a group of 15 patients with hydrocephalus and a programmable drainage system also underwent TSE sequence MR imaging. The susceptibility artifact volume in both rapid MR protocols was evaluated using a semiautomatic volumetry system. A statistically significant decrease in the susceptibility artifact volume has been demonstrated in TSE sequence imaging in comparison with SSh sequences. Using TSE sequences reduced the influence of artifacts from the programmable valve, and the image quality in all cases was rated as excellent. In all patients, rapid MR examinations were performed without any need for intravenous sedation or general anesthesia. Our study results strongly suggest the superiority of the TSE sequence MR protocol compared to the SSh sequence protocol in pediatric patients with a programmable ventriculoperitoneal drainage system due to a significant reduction of susceptibility artifact volume. Both rapid sequence MR protocols provide quick and satisfactory brain imaging with no ionizing radiation and a reduced need for intravenous or general anesthesia.

Development of an eddy-resolving reanalysis using the 1/12° global HYbrid Coordinate Ocean Model and the Navy Coupled Ocean Data Assimilation Scheme

NASA Astrophysics Data System (ADS)

Allard, Richard; Metzger, E. Joseph; Broome, Robert; Franklin, Deborah; Smedstad, Ole Martin; Wallcraft, Alan

2013-04-01

Multiple international agencies have performed atmospheric reanalyses using static dynamical models and assimilation schemes while ingesting all available quality controlled observational data. Some are clearly aimed at climate time scales while others focus on the more recent time period in which assimilated satellite data are used to constrain the system. Typically these are performed at horizontal and vertical resolutions that are coarser than the existing operational atmospheric prediction system. Multiple agencies have also performed ocean reanalyses using some of the atmospheric forcing products described above. However, only a few are eddy-permitting and none are capable of resolving oceanic mesoscale features (eddies and current meanders) across the entire globe. To fill this void, the Naval Research Laboratory is performing an eddy-resolving 1993-2010 ocean reanalysis using the 1/12° global HYbrid Coordinate Ocean Model (HYCOM) that employs the Navy Coupled Ocean Data Assimilation (NCODA) scheme. A 1/12° global HYCOM/NCODA prediction system has been running in real-time at the Naval Oceanographic Office (NAVOCEANO) since 22 December 2006. It has undergone operational testing and will become an operational product by early 2013. It is capable of nowcasting and forecasting the oceanic "weather" which includes the 3D ocean temperature, salinity and current structure, the surface mixed layer, and the location of mesoscale features such as eddies, meandering currents and fronts. The system has a mid-latitude resolution of ~7 km and employs 32 hybrid vertical coordinate surfaces. Compared to traditional isopycnal coordinate models, the hybrid vertical coordinate extends the geographic range of applicability toward shallow coastal seas and the unstratified parts of the world ocean. HYCOM contains a built-in thermodynamic ice model, where ice grows and melts due to heat flux and sea surface temperature (SST) changes, but it does not contain advanced rheological physics. The ice edge is constrained by satellite ice concentration. Once per day, NCODA performs a 3D ocean analysis using all available observational data and the 1-day HYCOM forecast as the first guess in a sequential incremental update cycle. Observational data include surface observations from satellites, including sea surface height (SSH) anomalies, SST, and sea ice concentrations, plus in-situ SST observations from ships and buoys as well as temperature and salinity profiles from XBTs, CTDs and Argo profiling floats. Surface information is projected downward using synthetic profiles from the Modular Ocean Data Assimilation System (MODAS) at those locations with a predefined SSH anomaly. Unlike previous reanalyses, this ocean reanalysis will be integrated at the same horizontal and vertical resolution as the operational system running at NAVOCEANO. The system is forced with atmospheric output from the National Centers for Environmental Prediction (NCEP) Climate Forecast System Reanalysis (CFSR) and the observations listed above. The reanalysis began in 1993 because of the advent of satellite altimeter data that will constrain the oceanic mesoscale. Significant effort has been put into obtaining and quality controlling all input observational data, with special emphasis on the profile data. The computational resources are obtained through the High Performance Computing Modernization Office.

Investigating Auditory Processing of Syntactic Gaps with L2 Speakers Using Pupillometry

ERIC Educational Resources Information Center

Fernandez, Leigh; Höhle, Barbara; Brock, Jon; Nickels, Lyndsey

2018-01-01

According to the Shallow Structure Hypothesis (SSH), second language (L2) speakers, unlike native speakers, build shallow syntactic representations during sentence processing. In order to test the SSH, this study investigated the processing of a syntactic movement in both native speakers of English and proficient late L2 speakers of English using…

Experiments in interdisciplinarity: Responsible research and innovation and the public good

PubMed Central

Åm, Heidrun

2018-01-01

In Europe, responsible research and innovation (RRI) has emerged as a science policy measure that demands the early integration of a broad range of social actors and perspectives into research and development (R&D). More collaboration of the social sciences and humanities (SSH) with science and engineering appears within this policy framework as a crucial element that will enable better technological development. However, RRI is new to both natural scientists and SSH scholars, and interdisciplinary collaborations are challenging for many reasons. In this paper, we discuss these challenges while suggesting that what RRI can be in a particular project is not a given but remains an empirical question. Natural scientists and SSH scholars need to coresearch RRI in an experimental mode. PMID:29579043

Experiments in interdisciplinarity: Responsible research and innovation and the public good.

PubMed

Delgado, Ana; Åm, Heidrun

2018-03-01

In Europe, responsible research and innovation (RRI) has emerged as a science policy measure that demands the early integration of a broad range of social actors and perspectives into research and development (R&D). More collaboration of the social sciences and humanities (SSH) with science and engineering appears within this policy framework as a crucial element that will enable better technological development. However, RRI is new to both natural scientists and SSH scholars, and interdisciplinary collaborations are challenging for many reasons. In this paper, we discuss these challenges while suggesting that what RRI can be in a particular project is not a given but remains an empirical question. Natural scientists and SSH scholars need to coresearch RRI in an experimental mode.

Non-local electron transport through normal and topological ladder-like atomic systems

NASA Astrophysics Data System (ADS)

Kurzyna, Marcin; Kwapiński, Tomasz

2018-05-01

We propose a locally protected ladder-like atomic system (nanoconductor) on a substrate that is insensitive to external perturbations. The system corresponds to coupled atomic chains fabricated on different surfaces. Electron transport properties of such conductors are studied theoretically using the model tight-binding Su-Schriffer-Hegger (SSH) Hamiltonian and Green's function formalism. We have found that the conductance of the system is almost insensitive to single adatoms and oscillates as a function of the side chain length with very large periods. Non-local character of the electron transport was observed also for topological SSH chains where nontrivial end states survive in the presence of disturbances as well as for different substrates. We have found that the careful inspection of the density of states or charge waves can provide the information about the atom energy levels and hopping amplitudes. Moreover, the ladder-like geometry allows one to distinguish between normal and topological zero-energy states. It is important that topological chains do not reveal Friedel oscillations which are observed in non-topological chains.

Deception Using an SSH Honeypot

DTIC Science & Technology

2017-09-01

the device itself but also the device’s cloud and mobile infrastructure. This increase in unsecured devices connected to the Internet presents...have SSH enabled on their systems without knowledge that this service is running. Computer -security professionals use several techniques to gain...early 2000s. Honeypots are decoy computer systems intended for no other purpose than to collect data on attackers. They gather information about

Assessment of Global Forecast Ocean Assimilation Model (FOAM) using new satellite SST data

NASA Astrophysics Data System (ADS)

Ascione Kenov, Isabella; Sykes, Peter; Fiedler, Emma; McConnell, Niall; Ryan, Andrew; Maksymczuk, Jan

2016-04-01

There is an increased demand for accurate ocean weather information for applications in the field of marine safety and navigation, water quality, offshore commercial operations, monitoring of oil spills and pollutants, among others. The Met Office, UK, provides ocean forecasts to customers from governmental, commercial and ecological sectors using the Global Forecast Ocean Assimilation Model (FOAM), an operational modelling system which covers the global ocean and runs daily, using the NEMO (Nucleus for European Modelling of the Ocean) ocean model with horizontal resolution of 1/4° and 75 vertical levels. The system assimilates salinity and temperature profiles, sea surface temperature (SST), sea surface height (SSH), and sea ice concentration observations on a daily basis. In this study, the FOAM system is updated to assimilate Advanced Microwave Scanning Radiometer 2 (AMSR2) and the Spinning Enhanced Visible and Infrared Imager (SEVIRI) SST data. Model results from one month trials are assessed against observations using verification tools which provide a quantitative description of model performance and error, based on statistical metrics, including mean error, root mean square error (RMSE), correlation coefficient, and Taylor diagrams. A series of hindcast experiments is used to run the FOAM system with AMSR2 and SEVIRI SST data, using a control run for comparison. Results show that all trials perform well on the global ocean and that largest SST mean errors were found in the Southern hemisphere. The geographic distribution of the model error for SST and temperature profiles are discussed using statistical metrics evaluated over sub-regions of the global ocean.

Bismarck or Beveridge: a beauty contest between dinosaurs

PubMed Central

van der Zee, Jouke; Kroneman, Madelon W

2007-01-01

Background Health systems delivery systems can be divided into two broad categories: National Health Services (NHS) on the one hand and Social Security (based) Health care systems (SSH) on the other hand. Existing literature is inconclusive about which system performs best. In this paper we would like to improve the evidence-base for discussion about pros and cons of NHS-systems versus SSH-system for health outcomes, expenditure and population satisfaction. Methods In this study we used time series data for 17 European countries, that were characterized as either NHS or SSH country. We used the following performance indicators: For health outcome: overall mortality rate, infant mortality rate and life expectancy at birth. For health care costs: health care expenditure per capita in pppUS$ and health expenditure as percentage of GDP. Time series dated from 1970 until 2003 or 2004, depending on availability. Sources were OECD health data base 2006 and WHO health for all database 2006. For satisfaction we used the Eurobarometer studies from 1996, 1998 and 1999. Results SSH systems perform slightly better on overall mortality rates and life expectancy (after 1980). For infant mortality the rates converged between the two types of systems and since 1980 no differences ceased to exist. SSH systems are more expensive and NHS systems have a better cost containment. Inhabitants of countries with SSH-systems are on average substantially more satisfied than those in NHS countries. Conclusion We concluded that the question 'which type of system performs best' can be answered empirically as far as health outcomes, health care expenditures and patient satisfaction are concerned. Whether this selection of indicators covers all or even most relevant aspects of health system comparison remains to be seen. Perhaps further and more conclusive research into health system related differences in, for instance, equity should be completed before the leading question of this paper can be answered. We do think, however, that this study can form a base for a policy debate on the pros and cons of the existing health care systems in Europe. PMID:17594476

Gene Expression Profiling in the Thiamethoxam Resistant and Susceptible B-biotype Sweetpotato Whitefly, Bemisia tabaci

PubMed Central

Xie, Wen; Yang, Xin; Wang, Shao-Ii; Wu, Qing-jun; Yang, Ni-na; Li, Ru-mei; Jiao, Xiaoguo; Pan, Hui-peng; Liu, Bai-ming; Feng, Yun-tao; Xu, Bao-yun; Zhou, Xu-guo; Zhang, You-jun

2012-01-01

Thiamethoxam has been used as a major insecticide to control the B-biotype sweetpotato whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae). Due to its excessive use, a high level of resistance to thiamethoxam has developed worldwide over the past several years. To better understand the molecular mechanisms underlying this resistance in B. tabaci, gene profiles between the thiamethoxam-resistant and thiamethoxam-susceptible strains were investigated using the suppression subtractive hybridization (SSH) library approach. A total of 72 and 52 upand down-regulated genes were obtained from the forward and reverse SSH libraries, respectively. These expressed sequence tags (ESTs) belong to several functional categories based on their gene ontology annotation. Some categories such as cell communication, response to abiotic stimulus, lipid particle, and nuclear envelope were identified only in the forward library of thiamethoxam-resistant strains. In contrast, categories such as behavior, cell proliferation, nutrient reservoir activity, sequence-specific DNA binding transcription factor activity, and signal transducer activity were identified solely in the reverse library. To study the validity of the SSH method, 16 differentially expressed genes from both forward and reverse SSH libraries were selected randomly for further analyses using quantitative realtime PCR (qRT-PCR). The qRT-PCR results were fairly consistent with the SSH results; however, only 50% of the genes showed significantly different expression profiles between the thiamethoxam-resistant and thiamethoxam-susceptible whiteflies. Among these genes, a putative NAD-dependent methanol dehydrogenase was substantially over-expressed in the thiamethoxamresistant adults compared to their susceptible counterparts. The distributed profiles show that it was highly expressed during the egg stage, and was most abundant in the abdomen of adult females. PMID:22957505

Molecular characterization of infectious bursal disease virus isolates from Nepal based on hypervariable region of VP2 gene.

PubMed

Sharma, K; Hair-Bejo, M; Omar, A R; Aini, I

2005-01-01

Two Infectious bursal disease virus (IBDV) isolates, NP1SSH and NP2K were obtained from a severe infectious bursal disease (IBD) outbreak in Nepal in 2002. The hypervariable (HV) region of VP2 gene (1326 bp) of the isolates was generated by RT-PCR and sequenced. The obtained nucleotide sequences were compared with those of twenty other IBDV isolates/strains. Phylogenetic analysis based on this comparison revealed that NP1SSH and NP2K clustered with very virulent (vv) IBDV strains of serotype 1. In contrast, classical, Australian classical and attenuated strains of serotype 1 and avirulent IBDV strains of serotype 2 formed a different cluster. The deduced amino acid sequences of the two isolates showed a 98.3% identity with each other and 97.1% and 98.3% identities, respectively with very virulent IBDV (vvIBDV) isolates/strains. Three amino acids substitutions at positions 300 (E-->A), 308 (I-->F) and 334 (A-->P) within the HV region were common for both the isolates. The amino acids substitutions at positions 27 (S-->T), 28 (I-->T), 31 (D-->A), 36 (H-->Y), 135 (E-->G), 223 (G-->S), 225 (V-->I), 351 (L-->I), 352 (V-->E) and 399 (I-->S) for NP1SSH and at position 438 (I-->S) for NP2K were unique and differed from other IBDV isolates/strains. NP1SSH and NP2K showed highest similarity (97.8%) with the BD399 strain from Bangladesh as compared with other vvIBDV isolates/strains. We conclude that the NP1SSH and NP2K isolates of IBDV from Nepal represent vvIBDV of serotype 1.

Observing and Studying Extreme Low Pressure Events with Altimetry

PubMed Central

Carrère, Loren; Mertz, Françoise; Dorandeu, Joel; Quilfen, Yves; Patoux, Jerome

2009-01-01

The ability of altimetry to detect extreme low pressure events and the relationship between sea level pressure and sea level anomalies during extra-tropical depressions have been investigated. Specific altimeter treatments have been developed for tropical cyclones and applied to obtain a relevant along-track sea surface height (SSH) signal: the case of tropical cyclone Isabel is presented here. The S- and C-band measurements are used because they are less impacted by rain than the Ku-band, and new sea state bias (SSB) and wet troposphere corrections are proposed. More accurate strong altimeter wind speeds are computed thanks to the Young algorithm. Ocean signals not related to atmospheric pressure can be removed with accuracy, even within a Near Real Time context, by removing the maps of sea level anomaly (SLA) provided by SSALTO/Duacs. In the case of Extra-Tropical Depressions, the classical altimeter processing can be used. Ocean signal not related to atmospheric pressure is along-track filtered. The sea level pressure (SLP)-SLA relationship is investigated for the North Atlantic, North Pacific and Indian oceans; three regression models are proposed allowing restoring an altimeter SLP with a mean error of 5 hPa if compared to ECMWF or buoys SLP. The analysis of barotropic simulation outputs points out the regional variability of the SLP/Model Sea Level relationship and the wind effects. PMID:22573955

Globus File Transfer Services | High-Performance Computing | NREL

Science.gov Websites

Account To get a Globus account, sign up on the Globus account website. To get access to the NREL endpoint continue. Use the Globus credentials you used to register your Globus.org account. Go to the Transfer Files Globus.org account to allow ssh CLI access To use the CLI you must have a Globus account with ssh access

Long-Term Monitoring of Regional Sea Surface Height Variability Using High-Resolution Satellite Altimetry

NASA Astrophysics Data System (ADS)

Rice, A. E.; Crout, R. L.

2017-12-01

Shallow water altimetry is an emerging field that in recent years has rapidly gained attention for both the numerous applications it can offer to the oceanographic community (e.g. assessment of climate change impacts to the coastal zone; quantification of sea state etc.) and, depending on the altimeter used, for the wealth of available historical data that can be employed for climatological studies. In this study we focus on the long-term analysis of regional sea surface height anomaly (SSHA) variability over the mid and outer shelf (≥ 16 km from the coast) for 18 selected coastal altimeter tracks located on the east coast of the US and Asia for a period of eight years (294 passes from July 2008 to July 2016) using Jason-2 20 Hz altimeter data from the L2 AVISO-PISTACH experimental products. After implementing geophysical corrections to the raw altimeter range, signal noise in the individual SSH passes was reduced by applying a median filter followed by a 60-point (18 km) low-pass filter as in Birol and Delebeque (2014). Since individual altimeter passes did not cease to collect data at the same distance from the coastline, a nearest-point-to-land (NPTL) was determined for each track for statistical analysis of the data. NPTL time series and SSHA envelopes, computed by subtracting mean SSHAs from individual passes, were used for the analysis. A comparison of wind and water level gauge data to a US east coast track reveals correlation between SSHA and winds and a relationship to subtidal water level frequencies. Time series of NPTL for all tracks show intra-annual and inter and intra-seasonal variability, with higher and lower water levels linked to seasons. Lastly, envelope plots display higher SSHA variability over the mid shelf than the outer shelf, revealing the location and magnitude (up to 0.5 m water level differences) of setup and set down occurrences. Various products derived from the analysis that are useful for oceanographic operations, including water level change percentages and width of coastal boundary layers, are discussed.

Nested high resolution models for the coastal areas of the North Indian Ocean

NASA Astrophysics Data System (ADS)

Wobus, Fred; Shapiro, Georgy

2017-04-01

Oceanographic processes at coastal scales require much higher horizontal resolution from both ocean models and observations as compared to deep water oceanography. Aside from a few exceptions such as land-locked seas, the hydrodynamics of coastal shallow waters is strongly influenced by the tides, which in turn control the mixing, formation of temperature fronts and other phenomena. The numerical modelling of the coastal domains requires good knowledge of the lateral boundary conditions. The application of lateral boundary conditions to ocean models is a notoriously tricky task, but can only be avoided with global ocean models. Smaller scale regional ocean models are typically nested within global models, and even smaller-scale coastal models may be nested within regional models, creating a nesting chain. However a direct nesting of a very high resolution coastal model into a coarse resolution global model results in degrading of the accuracy of the outputs due to the large difference between the model resolutions. This is why a nesting chain has to be applied, so that every increase in resolution is kept within a reasonable minimum (typically by a factor of 3 to 5 at each step). Global models are traditionally non-tidal, so at some stage of the nesting chain the tides need to be introduced. This is typically done by calculating the tidal constituents from a dedicated tidal model (e.g. TPXO) for all boundary points of a nested model. The tidal elevation at each boundary location can then be calculated from the harmonics at every model time step and the added to the parent model non-tidal SSH. This combination of harmonics-derived tidal SSH and non-tidal parent model SSH is typically applied to the nested domain using the Flather condition, together with the baroclinic velocities from the parent model. The harmonics-derived SSH cannot be added to an SSH signal that is already tidal, so the parent model SSH has to be either detided or taken from a non-tidal model. Due to the lack of effective detiding methods and the prevailing view that harmonics-derived SSH provide a cleaner tidal signal over the SSH taken from a tidal parent model it has traditionally only been the last model in a nesting chain that is tidal. But to our knowledge these assumptions haven't been sufficiently tested and need to be re-visited. Furthermore, the lack of tides in the larger-scale regional models limits their capability and we would like to push for a nesting chain where all regional models (including the intermediate ones) are tidal. In this study we have conducted a number of numerical experiments where we have tested whether a tidal regional model can effectively force a tidal nested model without resorting to detiding techniques and the use of a dedicated tidal model such as TPXO. We have tested whether it's possible to use a tidal parent model and use the total SSH (combined geostrophic SSH and tidal component) to force the child model at the boundary. We call this strategy "tidal nesting" as opposed to TPXO tidal forcing which is used in "traditional nesting". For our experiments we have developed 2 models based on the same NEMO 3.6 codebase. The medium resolution AS20 model covers the Arabian Sea at 1/20 ̊ with 50 layers using a hybrid s-on-top-of-z vertical discretisation scheme (Shapiro et al., 2013); and the high resolution AG60 model covers the Arabian/Persian Gulf at 1/60 ̊ with 50 layers. The AS20 model is "traditionally" nested within the UK Met Office non-tidal large-scale Indian Ocean model at 1/12 ̊ resolution and tidal constituents at the boundary are taken from the TPXO7.2 Global Tidal Solution. Our "tidal nesting" experiments use different forcing frequencies at which the tidal SSH is fed from the larger-scale AS20 into the smaller-scale AG60 model. These strategies are compared with "traditional nesting" where the inner AG60 uses boundary conditions from a non-tidal AS20 parent model and tides are computed from TPXO harmonics. The results reveal an optimal tidal nesting strategy which forces tidal SSH from the parent model at 1-hourly intervals whilst non-tidal parameters are forced at 24-hourly intervals. The analysis includes comparisons with tidal gauges in the Gulf of Oman and inside the Arabian Gulf. The accuracy of tides inside the Gulf is inhibited by the narrow Straits of Hormuz, and tidal nesting doesn't achieve the same level of agreement with observation as traditional nesting. We also found that a further increase in the SSH forcing frequency to 30 minutes does not further improve the results. The forcing at intervals of 1h/24h for tidal/non-tidal parameters shows that a 2-step tidal nesting chain is viable and thus tides can be represented in more than just the last model of a nesting chain. References: Shapiro, G., Luneva, M., Pickering, J., and Storkey, D.: The effect of various vertical discretization schemes and horizontal diffusion parameterization on the performance of a 3-D ocean model: the Black Sea case study, Ocean Sci., 9, 377-390, doi:10.5194/os-9-377-2013, 2013.

Genomic comparison of the endophyte Herbaspirillum seropedicae SmR1 and the phytopathogen Herbaspirillum rubrisubalbicans M1 by suppressive subtractive hybridization and partial genome sequencing.

PubMed

Monteiro, Rose A; Balsanelli, Eduardo; Tuleski, Thalita; Faoro, Helison; Cruz, Leonardo M; Wassem, Roseli; de Baura, Valter A; Tadra-Sfeir, Michelle Z; Weiss, Vinícius; DaRocha, Wanderson D; Muller-Santos, Marcelo; Chubatsu, Leda S; Huergo, Luciano F; Pedrosa, Fábio O; de Souza, Emanuel M

2012-05-01

Herbaspirillum rubrisubalbicans M1 causes the mottled stripe disease in sugarcane cv. B-4362. Inoculation of this cultivar with Herbaspirillum seropedicae SmR1 does not produce disease symptoms. A comparison of the genomic sequences of these closely related species may permit a better understanding of contrasting phenotype such as endophytic association and pathogenic life style. To achieve this goal, we constructed suppressive subtractive hybridization (SSH) libraries to identify DNA fragments present in one species and absent in the other. In a parallel approach, partial genomic sequence from H. rubrisubalbicans M1 was directly compared in silico with the H. seropedicae SmR1 genome. The genomic differences between the two organisms revealed by SSH suggested that lipopolysaccharide and adhesins are potential molecular factors involved in the different phenotypic behavior. The cluster wss probably involved in cellulose biosynthesis was found in H. rubrisubalbicans M1. Expression of this gene cluster was increased in H. rubrisubalbicans M1 cells attached to the surface of maize root, and knockout of wssD gene led to decrease in maize root surface attachment and endophytic colonization. The production of cellulose could be responsible for the maize attachment pattern of H. rubrisubalbicans M1 that is capable of outcompeting H. seropedicae SmR1. © 2012 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Nuclear Matrix Proteins in Disparity of Prostate Cancer

DTIC Science & Technology

2011-07-01

using G3PDH 3’ primer and PCR primer 1 followed by two rounds of hybridization. In the first hybridization, the RsaI-digested driver cDNA was mixed...determined using β-actin to confirm the reduced relative abundance of the housekeeping gene after SSH. The SSH nested PCR products were cloned using pCR®2.1...variability of DNA concentration. Additionally, negative and positive controls ( housekeeping genes) from the Ambion™ ArrayControls™ Set were included

Reporting Errors in Siblings’ Survival Histories and Their Impact on Adult Mortality Estimates: Results From a Record Linkage Study in Senegal

PubMed Central

Helleringer, Stéphane; Pison, Gilles; Kanté, Almamy M.; Duthé, Géraldine; Andro, Armelle

2014-01-01

Estimates of adult mortality in countries with limited vital registration (e.g., sub-Saharan Africa) are often derived from information about the survival of a respondent’s siblings. We evaluated the completeness and accuracy of such data through a record linkage study conducted in Bandafassi, located in southeastern Senegal. We linked at the individual level retrospective siblings’ survival histories (SSH) reported by female respondents (n = 268) to prospective mortality data and genealogies collected through a health and demographic surveillance system (HDSS). Respondents often reported inaccurate lists of siblings. Additions to these lists were uncommon, but omissions were frequent: respondents omitted 3.8 % of their live sisters, 9.1 % of their deceased sisters, and 16.6 % of their sisters who had migrated out of the DSS area. Respondents underestimated the age at death of the siblings they reported during the interview, particularly among siblings who had died at older ages (≥45 years). Restricting SSH data to person-years and events having occurred during a recent reference period reduced list errors but not age and date errors. Overall, SSH data led to a 20 % underestimate of 45q15 relative to HDSS data. Our study suggests new quality improvement strategies for SSH data and demonstrates the potential use of HDSS data for the validation of “unconventional” demographic techniques. PMID:24493063

Reporting errors in siblings' survival histories and their impact on adult mortality estimates: results from a record linkage study in Senegal.

PubMed

Helleringer, Stéphane; Pison, Gilles; Kanté, Almamy M; Duthé, Géraldine; Andro, Armelle

2014-04-01

Estimates of adult mortality in countries with limited vital registration (e.g., sub-Saharan Africa) are often derived from information about the survival of a respondent's siblings. We evaluated the completeness and accuracy of such data through a record linkage study conducted in Bandafassi, located in southeastern Senegal. We linked at the individual level retrospective siblings' survival histories (SSH) reported by female respondents (n = 268) to prospective mortality data and genealogies collected through a health and demographic surveillance system (HDSS). Respondents often reported inaccurate lists of siblings. Additions to these lists were uncommon, but omissions were frequent: respondents omitted 3.8 % of their live sisters, 9.1 % of their deceased sisters, and 16.6 % of their sisters who had migrated out of the DSS area. Respondents underestimated the age at death of the siblings they reported during the interview, particularly among siblings who had died at older ages (≥45 years). Restricting SSH data to person-years and events having occurred during a recent reference period reduced list errors but not age and date errors. Overall, SSH data led to a 20 % underestimate of 45 q 15 relative to HDSS data. Our study suggests new quality improvement strategies for SSH data and demonstrates the potential use of HDSS data for the validation of "unconventional" demographic techniques.

Observed seasonal and interannual variability of the near-surface thermal structure of the Arabian Sea Warm Pool

NASA Astrophysics Data System (ADS)

Rao, R. R.; Ramakrishna, S. S. V. S.

2017-06-01

The observed seasonal and interannual variability of near-surface thermal structure of the Arabian Sea Warm Pool (ASWP) is examined utilizing a reanalysis data set for the period 1990-2008. During a year, the ASWP progressively builds from February, reaches its peak by May only in the topmost 60 m water column. The ASWP Index showed a strong seasonal cycle with distinct interannual signatures. The years with higher (lower) sea surface temperature (SST) and larger (smaller) spatial extent are termed as strong (weak) ASWP years. The differences in the magnitude and spatial extent of thermal structure between the strong and weak ASWP regimes are seen more prominently in the topmost 40 m water column. The heat content values with respect to 28 °C isotherm (HC28) are relatively higher (lower) during strong (weak) ASWP years. Even the secondary peak in HC28 seen during the preceding November-December showed higher (lower) magnitude during the strong ASWP (weak) years. The influence of the observed variability in the surface wind field, surface net air-sea heat flux, near-surface mixed layer thickness, sea surface height (SSH) anomaly, depth of 20 °C isotherm and barrier layer thickness is examined to explain the observed differences in the near-surface thermal structure of the ASWP between strong and weak regimes. The surface wind speed is much weaker in particular during the preceding October and February-March corresponding to the strong ASWP years when compared to those of the weak ASWP years implying its important role. Both stronger winter cooling during weak ASWP years and stronger pre-monsoon heating during strong ASWP years through the surface air-sea heat fluxes contribute to the observed sharp contrast in the magnitudes of both the regimes of the ASWP. The upwelling Rossby wave during the preceding summer monsoon, post-monsoon and winter seasons is stronger corresponding to the weak ASWP regime when compared to the strong ASWP regime resulting in greater cooling of the near-surface layers during the summer monsoon season of the preceding year. On the other hand, the downwelling Rossby wave is stronger during pre-monsoon months during the strong ASWP regime when compared to weak ASWP regime leading to lesser cooling during strong ASWP regime.

What role for social sciences in socio-hydrology? Results from an online survey among hydrologists

NASA Astrophysics Data System (ADS)

Seidl, Roman; Barthel, Roland; Stauffacher, Michael

2015-04-01

The necessity of a more integrated approach in hydrological research has been highlighted by the IAHS scientific decade 2013-2022 "Panta Rhei", dedicated to foster multi-disciplinary research activities on changes in hydrology and society (Montanari, Young et al. 2013). On a similar note, the concept of Socio-Hydrology (Sivapalan, Savenije et al. 2012) suggests a much deeper involvement of hydrologists in socio-economic questions. Despite this general consensus, it remains unclear how such interdisciplinary approaches should be carried out and, in particular, which roles hydrological sciences (HS) and social sciences and the humanities (SSH) should assume. In order to evaluate the opinion of HS on the mutual contributions of HS and SSH to the process of integration, an online survey was prepared by the authors and announced through the newsletters of the International Association of Hydrogeologists (IAH) and the International Association of Hydrological Sciences (IAHS). Two sets of questions offered a choice of potential contributions to interdisciplinary processes of HS and SSH respectively. A third group of questions asked for the status of integration of HS and SSH and if improvements are needed. Finally, participants were asked to rank different options to foster or improve cooperation between natural and social scientists. 141 questionnaires could be used for further analysis. As expected the background of most participants is hydrology, but many also mention more than one discipline. Most participants have their main place of work in Europe. The answers were analysed using Factor and Cluster analysis to reveal potential patterns in the data. The main results from the survey can be summarized like this: The majority of respondents agrees that SSH is not well integrated into hydrological research as yet and most participants see a need for better cooperation. Expectations from hydrologists who should do what in integrative work, reveal that some roles are perceived similarly for both SSH and HS: Facilitate resource management, Exchange knowledge, Communicate the results, Reflect about the normative aspects, Secure public acceptance. However, hydrologists assume it is clearly more the role of SSH to study socio-economic aspects and the impact of human decisions on the environment, for instance. Higher status and acknowledgment by other colleagues does not seem to be a major incentive for integrative work, ranking lowest of all offered statements. However, the statement Hydrologists themselves should consider and integrate socio-economic aspects in their own work, was rated most often as most preferable. One can speculate that hydrologists (at least many in our sample) would like to learn from SSH but then apply that knowledge themselves; that is, "integrate" social science tasks into their field, or rather into a new discipline, socio-hydrology but not collaborate at eye-level with social scientists. We conclude that researchers interested in the integration of disciplines should explicitly specify how they would like to achieve this, what mutual expectations they have. In the case of the Panta Rhei initiative or Social Hydrology, this seems neither evident nor explicitly done. References: Montanari, A., et al. (2013). ""Panta Rhei -- Everything Flows": Change in hydrology and society -- The IAHS Scientific Decade 2013-2022." Hydrological Sciences Journal: 1-20. Sivapalan, M., et al. (2012). "Socio-hydrology: A new science of people and water." Hydrological Processes 26(8): 1270-1276.

Eddy forced variations in on- and off-margin summertime circulation along the 1000-m isobath of the northern Gulf of Mexico, 2000-2003, and links with sperm whale distributions along the middle slope

NASA Astrophysics Data System (ADS)

Biggs, Douglas C.; Jochens, Ann E.; Howard, Matthew K.; DiMarco, Steven F.; Mullin, Keith D.; Leben, Robert R.; Muller-Karger, Frank E.; Hu, Chuanmin

In summers 2000-2003, NOAA Ship Gordon Gunter and TAMU R/V Gyre dropped XBTs and logged ADCP data while carrying out visual and passive-acoustic surveys for sperm whales along the 1000-m isobath of the northern Gulf of Mexico. The ships also made CTD casts, particularly when/where the XBT and ADCP data indicated the ships were passing into or out of anticyclonic and/or cyclonic slope eddies. The fine-scale resolution of the ship surveys, when combined with the meso-scale resolution of remote sensing surveys of sea surface height and ocean color, document the summer-to-summer variability in the intensity and geographic location of Loop Current eddies, warm slope eddies, and areas of cyclonic circulation over this middle slope region of the northern Gulf of Mexico. These variations forced striking year-to-year differences in the locations along the 1000-m isobath where there was on-margin and off-margin flow, and in locations where sperm whales were encountered along the 1000-m isobath. For example, when there was on-margin flow into the Mississippi Canyon region in early summer 2003, sperm whales were very rarely seen or heard there. In contrast, later that summer and during other summers when flow was along-margin or off-margin there, sperm whales were locally abundant. In this report we describe how eddy-forced variations in on-margin and off-margin flow changed the meso-scale circulation along the 1000-m isobath, and we show that most sperm whales were encountered in regions of negative SSH and/or higher-than-average surface chlorophyll.

Neural network-based estimates of Southern Ocean net community production from in-situ and satellite observation: A methodological study

NASA Astrophysics Data System (ADS)

Chang, C.; Johnson, N. C.; Cassar, N.

2012-12-01

Although the Southern Ocean (SO) net community production (NCP), which is the difference between gross primary production and the community respiration rate, plays an important role in the global carbon cycle, limited in situ measurements prohibit a thorough understanding of the climatology and variability NCP in this region. In order to achieve a more comprehensive characterization of temporal and spatial variability of Southern Ocean NCP, we use a neural network approach based on the self-organizing map (SOM) to reconstruct weekly gridded (1o x 1o) SO NCP maps for the period of 1998-2009. This approach combines in situ measurements of NCP from over 40 research cruises with satellite-derived NCP predictor data, which includes chlorophyll (Chl), particulate organic carbon (POC), photosynthetically available radiation (PAR), sea surface height (SSH), and sea surface temperature (SST), as well as the mixed layer depth (MLD) from a high-resolution ocean general circulation model forced with satellite observed wind. The resulting NCP reconstructions reveal a number of salient features, including low NCP in the subtropics except near land masses, elevated NCP along the subtropical front (STF) around 40oS and especially off the Atlantic coast of the South America between the Río de la Plata and the Falkland Island, and moderate NCP values near Kerguelen Islands and along the Antarctic coast. Peak SO NCP occurs during November - January, as expected, and the climatological NCP field during the growing season closely resembles the climatological POC field. This neural network approach, which reveals complex nonlinear relationships and readily handles missing predictor data, provides a comprehensive view of SO NCP and an opportunity to investigate variability over a period of more than ten years. Convergence of various approaches;

Suppressive subtractive hybridization approach revealed differential expression of hypersensitive response and reactive oxygen species production genes in tea (Camellia sinensis (L.) O. Kuntze) leaves during Pestalotiopsis thea infection.

PubMed

Senthilkumar, Palanisamy; Thirugnanasambantham, Krishnaraj; Mandal, Abul Kalam Azad

2012-12-01

Tea (Camellia sinensis (L.) O. Kuntze) is an economically important plant cultivated for its leaves. Infection of Pestalotiopsis theae in leaves causes gray blight disease and enormous loss to the tea industry. We used suppressive subtractive hybridization (SSH) technique to unravel the differential gene expression pattern during gray blight disease development in tea. Complementary DNA from P. theae-infected and uninfected leaves of disease tolerant cultivar UPASI-10 was used as tester and driver populations respectively. Subtraction efficiency was confirmed by comparing abundance of β-actin gene. A total of 377 and 720 clones with insert size >250 bp from forward and reverse library respectively were sequenced and analyzed. Basic Local Alignment Search Tool analysis revealed 17 sequences in forward SSH library have high degree of similarity with disease and hypersensitive response related genes and 20 sequences with hypothetical proteins while in reverse SSH library, 23 sequences have high degree of similarity with disease and stress response-related genes and 15 sequences with hypothetical proteins. Functional analysis indicated unknown (61 and 59 %) or hypothetical functions (23 and 18 %) for most of the differentially regulated genes in forward and reverse SSH library, respectively, while others have important role in different cellular activities. Majority of the upregulated genes are related to hypersensitive response and reactive oxygen species production. Based on these expressed sequence tag data, putative role of differentially expressed genes were discussed in relation to disease. We also demonstrated the efficiency of SSH as a tool in enriching gray blight disease related up- and downregulated genes in tea. The present study revealed that many genes related to disease resistance were suppressed during P. theae infection and enhancing these genes by the application of inducers may impart better disease tolerance to the plants.

Effects of Sacubitril/Valsartan (LCZ696) on Natriuresis, Diuresis, Blood Pressures, and NT-proBNP in Salt-Sensitive Hypertension.

PubMed

Wang, Tzung-Dau; Tan, Ru-San; Lee, Hae-Young; Ihm, Sang-Hyun; Rhee, Moo-Yong; Tomlinson, Brian; Pal, Parasar; Yang, Fan; Hirschhorn, Elizabeth; Prescott, Margaret F; Hinder, Markus; Langenickel, Thomas H

2017-01-01

Salt-sensitive hypertension (SSH) is characterized by impaired sodium excretion and subnormal vasodilatory response to salt loading. Sacubitril/valsartan (LCZ696) was hypothesized to increase natriuresis and diuresis and result in superior blood pressure control compared with valsartan in Asian patients with SSH. In this randomized, double-blind, crossover study, 72 patients with SSH received sacubitril/valsartan 400 mg and valsartan 320 mg once daily for 4 weeks each. SSH was diagnosed if the mean arterial pressure increased by ≥10% when patients switched from low (50 mmol/d) to high (320 mmol/d) sodium diet. The primary outcome was cumulative 6- and 24-hour sodium excretion after first dose administration. Compared with valsartan, sacubitril/valsartan was associated with a significant increase in natriuresis (adjusted treatment difference: 24.5 mmol/6 hours, 50.3 mmol/24 hours, both P<0.001) and diuresis (adjusted treatment difference: 291.2 mL/6 hours, P<0.001; 356.4 mL/24 hours, P=0.002) on day 1, but not on day 28, and greater reductions in office and ambulatory blood pressure on day 28. Despite morning dosing of both drugs, ambulatory blood pressure reductions were more pronounced at nighttime than at daytime or the 24-hour average. Compared with valsartan, sacubitril/valsartan significantly reduced N-terminal pro B-type natriuretic peptide levels on day 28 (adjusted treatment difference: -20%; P=0.001). Sacubitril/valsartan and valsartan were safe and well tolerated with no significant changes in body weight or serum sodium and potassium levels with either treatments. In conclusion, sacubitril/valsartan compared with valsartan was associated with short-term increases in natriuresis and diuresis, superior office and ambulatory blood pressure control, and significantly reduced N-terminal pro B-type natriuretic peptide levels in Asian patients with SSH. URL: http://www.clinicaltrials.gov. Unique identifier: NCT01681576. © 2016 American Heart Association, Inc.

An SSH key management system: easing the pain of managing key/user/account associations

NASA Astrophysics Data System (ADS)

Arkhipkin, D.; Betts, W.; Lauret, J.; Shiryaev, A.

2008-07-01

Cyber security requirements for secure access to computing facilities often call for access controls via gatekeepers and the use of two-factor authentication. Using SSH keys to satisfy the two factor authentication requirement has introduced a potentially challenging task of managing the keys and their associations with individual users and user accounts. Approaches for a facility with the simple model of one remote user corresponding to one local user would not work at facilities that require a many-to-many mapping between users and accounts on multiple systems. We will present an SSH key management system we developed, tested and deployed to address the many-to-many dilemma in the environment of the STAR experiment. We will explain its use in an online computing context and explain how it makes possible the management and tracing of group account access spread over many sub-system components (data acquisition, slow controls, trigger, detector instrumentation, etc.) without the use of shared passwords for remote logins.

California serogroup and Powassan virus infection of cats.

PubMed

Keane, D P; Parent, J; Little, P B

1987-08-01

One hundred and seventy five sera from cats in Ontario, Canada, were tested for hemagglutination inhibition (HI) antibodies to three arboviruses; namely, Powassan (POW) of the Flavivirus serogroup, and Snowshoe hare (SSH) and Jamestown Canyon (JC) viruses of the California (CAL) serogroup. All sera were negative for antibodies to POW virus. Twelve cats possessed CAL serogroup antibodies including 3 with antibodies to SSH alone, 6 with antibodies to JC alone, and 3 with antibodies to both SSH and JC antigens. POW virus was inoculated into seven cats, one intracerebrally and six intravenously. Neurologic signs were not detected in any of the cats. Histologic lesions of a nonsuppurative encephalitis and encephalomyelitis were observed in the intracerebrally inoculated cat and in one of the intravenously inoculated cats, respectively. POW virus was not isolated from the brain or spinal cord of either of these two cats. HI antibodies were detected in the sera of all inoculated animals. HI antibodies were not detected in the CSF of any animal.

Analysis of Differentially Expressed Genes Associated with Coronatine-Induced Laticifer Differentiation in the Rubber Tree by Subtractive Hybridization Suppression

PubMed Central

Zhang, Shi-Xin; Wu, Shao-Hua; Chen, Yue-Yi; Tian, Wei-Min

2015-01-01

The secondary laticifer in the secondary phloem is differentiated from the vascular cambia of the rubber tree (Hevea brasiliensis Muell. Arg.). The number of secondary laticifers is closely related to the rubber yield potential of Hevea. Pharmacological data show that jasmonic acid and its precursor linolenic acid are effective in inducing secondary laticifer differentiation in epicormic shoots of the rubber tree. In the present study, an experimental system of coronatine-induced laticifer differentiation was developed to perform SSH identification of genes with differential expression. A total of 528 positive clones were obtained by blue-white screening, of which 248 clones came from the forward SSH library while 280 clones came from the reverse SSH library. Approximately 215 of the 248 clones and 171 of the 280 clones contained cDNA inserts by colony PCR screening. A total of 286 of the 386 ESTs were detected to be differentially expressed by reverse northern blot and sequenced. Approximately 147 unigenes with an average length of 497 bp from the forward and 109 unigenes with an average length of 514 bp from the reverse SSH libraries were assembled and annotated. The unigenes were associated with the stress/defense response, plant hormone signal transduction and structure development. It is suggested that Ca2+ signal transduction and redox seem to be involved in differentiation, while PGA and EIF are associated with the division of cambium initials for COR-induced secondary laticifer differentiation in the rubber tree. PMID:26147807

Using OpenSSH to secure mobile LAN network traffic

NASA Astrophysics Data System (ADS)

Luu, Brian B.; Gopaul, Richard D.

2002-08-01

Mobile Internet Protocol (IP) Local Area Network (LAN) is a technique, developed by the U.S. Army Research Laboratory, which allows a LAN to be IP mobile when attaching to a foreign IP-based network and using this network as a means to retain connectivity to its home network. In this paper, we describe a technique that uses Open Secure Shell (OpenSSH) software to ensure secure, encrypted transmission of a mobile LAN's network traffic. Whenever a mobile LAN, implemented with Mobile IP LAN, moves to a foreign network, its gateway (router) obtains an IP address from the new network. IP tunnels, using IP encapsulation, are then established from the gateway through the foreign network to a home agent on its home network. These tunnels provide a virtual two-way connection to the home network for the mobile LAN as if the LAN were connected directly to its home network. Hence, when IP mobile, a mobile LAN's tunneled network traffic must traverse one or more foreign networks that may not be trusted. This traffic could be subject to eavesdropping, interception, modification, or redirection by malicious nodes in these foreign networks. To protect network traffic passing through the tunnels, OpenSSH is used as a means of encryption because it prevents surveillance, modification, and redirection of mobile LAN traffic passing across foreign networks. Since the software is found in the public domain, is available for most current operating systems, and is commonly used to provide secure network communications, OpenSSH is the software of choice.

Interdisciplinary promises versus practices in medicine: the decoupled experiences of social sciences and humanities scholars.

PubMed

Albert, Mathieu; Paradis, Elise; Kuper, Ayelet

2015-02-01

This paper explores social scientists' and humanities (SSH) scholars' integration within the academic medical research environment. Three questions guided our investigation: Do SSH scholars adapt to the medical research environment? How do they navigate their career within a culture that may be inconsistent with their own? What strategies do they use to gain legitimacy? The study builds on three concepts: decoupling, doxa, and epistemic habitus. Twenty-nine semi-structured interviews were conducted with SSH scholars working in 11 faculties of medicine across Canada. Participants were selected through purposeful and snowball sampling. The data were analyzed by thematic content analysis. For most of our participants, moving into medicine has been a challenging experience, as their research practices and views of academic excellence collided with those of medicine. In order to achieve some level of legitimacy more than half of our participants altered their research practices. This resulted in a dissonance between their internalized appreciation of academic excellence and their new, altered, research practices. Only six participants experienced no form of challenge or dissonance after moving into medicine, while three decided to break with their social science and humanities past and make the medical research community their new home. We conclude that the work environment for SSH scholars in faculties of medicine does not deliver on the promise of inclusiveness made by calls for interdisciplinarity in Canadian health research. Copyright © 2014 Elsevier Ltd. All rights reserved.

Spectral Interpretation of Wave-vortex Duality in Northern South China Sea

NASA Astrophysics Data System (ADS)

Cao, H.; Jing, Z.; Yan, T.

2017-12-01

The mesoscale to submesocale oceanic dynamics are characterized by a joint effect of vortex and wave component, which primarily declares the partition between geostrophic balanced and unbalanced flows. The spectral method is a favorable approach that can afford the muti-scale analysis. This study investigates the characteristics of horizontal wavenumber spectra in Nothern South China Sea using orbital altimeter data (SARA/AltiKa), 13-yr shipboard ADCP (Acoustic Doppler Current Profiler) measurements (2014-2016), and a high-resolution numerical simulation (llc4320 Mitgcm). The observed SSH (sea surface height) spectrum presents a conspicuous transition at scales of 50-100 km, which clearly shows the inconsistency with geostrophic balance. The Helmholtz decomposition separating the wave and vortex energy for the spectra of ADCP and numerical model data shows that ageostrophic flows should be responsible for the spectral discrepancy with the QG (qusi-geostrophic) turbulence theory. Generally, it is found that inertia-gravity waves (including internal tides) govern the significant kinetic energy in the submesoscale range in Northern South China Sea. More specific analysis suggests that the wave kinetic energy can extend to a large scale of 500 km or more from the zonal velocity spectra at the left-center of Luzon Strait, which appears to be dominated by inertia-gravity waves likely emitted by the intrusion of the west pacific at Luzon Strait. Instead, the development of eddy kinetic energy at this place is strictly constrained by the width of the strait.

Implementation of Wetting and Drying in NCOM: Description and Validation Test Report

DTIC Science & Technology

2015-08-04

is mainly affected by the amplitude of the tides and the amount of “set down” of the SSH caused by the winds . The amount of set up or set down at the...coast depends on the strength and direction of the winds and the shape of the local coastline and bathymetry. For example, the gradient of the SSH...between the mouth and head of a bay is approximately proportional to the distance between the mouth and the head of the bay and the magnitude of the wind

1/32 Degree Real-Time Global Ocean Prediction and Value-Added Over 1/16 Degree Resolution

DTIC Science & Technology

2007-07-30

SSH ridge to the south of these eddies are captured by at least one of the two data narrowing the trough, both assisting in cutting off eddy...In Section 3.4, the off from a GFO track a week later (Fig. 3D). Eddy #12 Hawaiian Islands region is used to compare results where was already...Journal of Marine Systems 65 (2007) 3-26 13 The second example is the cluster of 6 small eddies week leading up to 29 Sept. This formed an SSH trough

Tle Triangulation Campaign by Japanese High School Students as a Space Educational Project of the Ssh Consortium Kochi

NASA Astrophysics Data System (ADS)

Yamamoto, Masa-Yuki; Okamoto, Sumito; Miyoshi, Terunori; Takamura, Yuzaburo; Aoshima, Akira; Hinokuchi, Jin

As one of the space educational projects in Japan, a triangulation observation project of TLE (Transient Luminous Events: sprites, elves, blue-jets, etc.) has been carried out since 2006 in collaboration between 29 Super Science High-schools (SSH) and Kochi University of Technol-ogy (KUT). Following with previous success of sprite observations by "Astro High-school" since 2004, the SSH consortium Kochi was established as a national space educational project sup-ported by Japan Science and Technology Agency (JST). High-sensitivity CCD camera (Watec, Neptune-100) with 6 mm F/1.4 C-mount lens (Fujinon) and motion-detective software (UFO-Capture, SonotaCo) were given to each participating team in order to monitor Northern night sky of Japan with almost full-coverage. During each school year (from April to March in Japan) since 2006, thousands of TLE images were taken by many student teams, with considerably large numbers of successful triangulations, i.e., (School year, Numbers of TLE observations, Numbers of triangulations) are (2006, 43, 3), (2007, 441, 95), (2008, 734, 115), and (2009, 337, 78). Note that, school year in Japan begins on April 1 and ends on March 31. The observation campaign began in December 2006, numbers are as of Feb. 28, 2010. Recently, some high schools started wide field observations using multiple cameras, and others started VLF observations using handmade loop antennae and amplifiers. Infomation exchange among the SSH consortium Kochi is frequently communicated with scientific discussion via KUT's mailing lists. Also, interactions with amateur observers in Japan are made through an internet forum of "SonotaCo Network Japan" (http://sonotaco.jp). Not only as an educational project but also as a scientific one, the project is also in success. In February 2008, simultaneous observations of Elves were obtained, in November 2009 a Giant "Graft-shaped" Sprites driven by Jets was clearly imaged with VLF signals. Most recently, ob-servations of Elves and sprite halos with stripes like wave structures on airglow were successfully imaged in January 2010. In this talk, four years activities of the SSH consortium Kochi will be presented by participating high-school students and teachers with their own impressions.

Repeated psychological stress-induced alterations of visceral sensitivity and colonic motor functions in mice: influence of surgery and postoperative single housing on visceromotor responses.

PubMed

Larauche, Muriel; Gourcerol, Guillaume; Million, Mulugeta; Adelson, David W; Taché, Yvette

2010-07-01

Visceral pain modulation by chronic stress in mice has been little studied. Electromyography (EMG) recording of abdominal muscle contractions, as a proxy to the visceromotor response (VMR), requires electrode implantation and post-surgical single housing (SH) which could affect the VMR to stress. To test this hypothesis, male mice had electrode implantation surgery (S) plus SH, or no surgery and were group housed (NS-GH) or single housed (NS-SH) and exposed to either water avoidance stress (WAS, 1 h/day) or left undisturbed in their home cages for 10 days. The VMR to phasic ascending colorectal distension (CRD) was assessed before (basal) and 24 h after 10 days of WAS or no stress using a surgery-free method of intraluminal colonic pressure (ICP) recording (solid-state manometry). WAS heightened significantly the VMR to CRD at 30, 45, and 60 mmHg in S-SH vs. NS-GH, but not compared to NS-SH conscious mice. Compared to basal CRD, WAS increased VMR at 60 mmHg in the S-SH group and decreased it at 30-60 mmHg in NS-GH mice, while having no effect in NS-SH mice. The average defecation during the hour of repeated WAS over 10 days was 1.9 and 2.4 fold greater in S-SH vs. NS-GH and NS-SH mice, respectively. These data indicate that the combination of S-SH required for VMR monitoring with EMG is an important component of repeated WAS-induced post-stress visceral hypersensitivity and defecation in mice.

Charge and energy transports via poly-phenylacetylene based dendrimers

NASA Astrophysics Data System (ADS)

Shin, Yongwoo; Li, Minghai; Lin, Xi

2010-03-01

Poly-Phenylacetylene (PPA) is widely used in photoconductivity, photoluminescence, and light harvesting applications. In this work, we investigate the charge and exciton transport energetics and mechanisms in the PPA-based dendrimers using our recently developed adapted Su-Schrieffer-Heeger (SSH) model Hamiltonians and ab initio Hartree-Fock (HF) calculations. We found both doping and photo-excitation lead to the formation of optical phonon dressed pi electron states, namely the self-localized polarons, in the energy gap. Independent from their origins, these polarons can be self-trapped at multiple lattice locations along the PPA chain, and migrate from one to the next with an activation barrier of ˜0.006 eV, slightly higher than the corresponding barrier found in trans-polyacetylene. The PPA-based dendrimers can be constructed via the meta-positions of phenyl rings. In this case, we found the dendrimer junctions form attractive potential wells for both polarons and excitons, and the width and height of these junction potential wells can be controlled by the geometry of the dendrimers.

Su-Schrieffer-Heeger chain with one pair of [Formula: see text]-symmetric defects.

PubMed

Jin, L; Wang, P; Song, Z

2017-07-19

The topologically nontrivial edge states induce [Formula: see text] transition in Su-Schrieffer-Heeger (SSH) chain with one pair of gain and loss at boundaries. In this study, we investigated a pair of [Formula: see text]-symmetric defects located inside the SSH chain, in particular, the defects locations are at the chain centre. The [Formula: see text] symmetry breaking of the bound states leads to the [Formula: see text] transition, the [Formula: see text]-symmetric phases and the localized states were studied. In the broken [Formula: see text]-symmetric phase, all energy levels break simultaneously in topologically trivial phase; however, two edge states in topologically nontrivial phase are free from the influence of the [Formula: see text]-symmetric defects. We discovered [Formula: see text]-symmetric bound states induced by the [Formula: see text]-symmetric local defects at the SSH chain centre. The [Formula: see text]-symmetric bound states significantly increase the [Formula: see text] transition threshold and coalesce to the topologically protected zero mode with vanishing probabilities on every other site of the left-half chain and the right-half chain, respectively.

Pilot-scale bioconversion of rice and sunflower agro-residues into medicinal mushrooms and laccase enzymes through solid-state fermentation with Ganoderma lucidum.

PubMed

Postemsky, P D; Bidegain, M A; González-Matute, R; Figlas, N D; Cubitto, M A

2017-05-01

Solid-state fermentation was evaluated at the pilot-scale for the bioconversion and valorization of rice husks and straw (RSH), or sunflower seed hulls (SSH), into medicinal mushrooms and crude extracts, with laccase activity. The average mushroom yield was 56kg dry weight per ton of agro-residues. Laccase activity in crude aqueous extracts showed its maximum value of 10,927Ukg -1 in RSH (day 10, Exudate phase) and 16,442Ukg -1 in SSH (day 5, Full colonization phase), the activity at the Residual substrate phase being 511Ukg -1 in RSH and 803Ukg -1 in SSH, respectively. Crude extracts obtained with various protocols revealed differences in the extraction yields. Lyophilization followed by storage at 4°C allowed the preservation of laccase activity for more than one month. It is proposed that standard mushroom farms could increase their profits by obtaining laccase as a byproduct during the gaps in mycelium running. Copyright © 2017 Elsevier Ltd. All rights reserved.

Multi-Scale 4DVAR Assimilation of Glider Teams on the North Carolina Shelf

NASA Astrophysics Data System (ADS)

Osborne, J. J. V.; Carrier, M.; Book, J. W.; Barron, C. N.; Rice, A. E.; Rowley, C. D.; Smedstad, L.; Souopgui, I.; Teague, W. J.

2017-12-01

We demonstrate a method to assimilate glider profile data from multiple gliders in close proximity ( 10 km or less). Gliders were deployed in a field experiment from 17 May until 4 June 2017, north of Cape Hatteras and inshore of the Gulf Stream. Gliders were divided into two teams, generally two or three gliders per team. One team was tasked with station keeping and the other with moving and sampling regions of high variability in temperature and salinity. Glider data are assimilated into the Relocatable Navy Coastal Ocean Model (RELO NCOM) with four dimensional variational assimilation (NCOM-4DVAR). RELO NCOM is used by the US Navy to predict the ocean. RELO NCOM is a baroclinic, Boussinesq, free-surface, and hydrostatic ocean model with a flexible sigma-z vertical coordinate. Two domains are used, one focused north and one focused south of Cape Hatteras. The domains overlap near the gliders, thus providing two forecasts near the gliders. Both domains have 1 km horizontal resolution. Data are assimilated in a newly-developed multi-scale data-processing and assimilating approach using NCOM-4DVAR. This enables NCOM-4DVAR to use many more observations than standard NCOM-4DVAR, improving the analysis and forecast. Assimilation experiments use station-keeping glider data, moving glider data, or all glider data. Sea surface temperature (SST) data and satellite altimeter (SSH) data are also assimilated. An additional experiment omits glider data but still assimilates SST and SSH data. Conductivity, temperature, and depth (CTD) profiles from the R/V Savannah are used for validation, including data from an underway CTD (UCTD). Data from glider teams have the potential to significantly improve model forecasts. Missions using teams of gliders can be planned to maximize data assimilation for optimal impact on model predictions.

Impact of salt exposure on N-acetylgalactosamine-4-sulfatase (arylsulfatase B) activity, glycosaminoglycans, kininogen, and bradykinin

PubMed Central

Kotlo, Kumar; Bhattacharyya, Sumit; Yang, Bo; Feferman, Leonid; Tejaskumar, Shah; Linhardt, Robert; Danziger, Robert

2013-01-01

N -acetylgalactosamine-4-sulfatase (Arylsulfatase B; ARSB) is the enzyme that removes sulfate groups from the N-acetylgalactosamine-4-sulfate residue at the non-reducing end of chondroitin-4-sulfate (C4S) and dermatan sulfate (DS). Previous studies demonstrated reduction in cell-bound high molecular weight kininogen in normal rat kidney (NRK) epithelial cells when chondroitin-4-sulfate content was reduced following overexpression of ARSB activity, and chondroitinase ABC produced similar decline in cell-bound kininogen. Reduction in the cell-bound kininogen was associated with increase in secreted bradykinin. In this report, we extend the in vitro findings to in vivo models, and present findings in Dahl salt-sensitive (SS) rats exposed to high (SSH) and low salt (SSL) diets. In the renal tissue of the SSH rats, ARSB activity was significantly less than in the SSL rats, and chondroitin-4-sulfate and total sulfated glycosaminoglycan content were significantly greater. Disaccharide analysis confirmed marked increase in C4S disaccharides in the renal tissue of the SSH rats. In contrast, unsulfated, hyaluronan-derived disaccharides were increased in the rats on the low salt diet. In the SSH rats, with lower ARSB activity and higher C4S levels, cell-bound, high-molecular weight kininogen was greater and urinary bradykinin was lower. ARSB activity in renal tissue and NRK cells declined when exogenous chloride concentration was increased in vitro. The impact of high chloride exposure in vivo on ARSB, chondroitin-4-sulfation, and C4S-kininogen binding provides a mechanism that links dietary salt intake with bradykinin secretion and may be a factor in blood pressure regulation. PMID:23385884

Repeated psychological stress-induced alterations of visceral sensitivity and colonic motor functions in mice: Influence of surgery and postoperative single housing on visceromotor responses

PubMed Central

Larauche, Muriel; Gourcerol, Guillaume; Million, Mulugeta; Adelson, David W.; Taché, Yvette

2012-01-01

Visceral pain modulation by chronic stress in mice has been little studied. Electromyography (EMG) recording of abdominal muscle contractions, as a proxy to the visceromotor response (VMR), requires electrode implantation and post-surgical single housing (SH) which could affect the VMR to stress. To test this hypothesis, male mice had electrode implantation surgery (S) plus SH, or no surgery and were group housed (NS-GH) or single housed (NS-SH) and exposed to either water avoidance stress (WAS, 1 h/day) or left undisturbed in their home cages for 10 days. The VMR to phasic ascending colorectal distension (CRD) was assessed before (basal) and 24 h after 10 days of WAS or no stress using a surgery-free method of intraluminal colonic pressure (ICP) recording (solid-state manometry). WAS heightened significantly the VMR to CRD at 30, 45, and 60 mmHg in S-SH vs. NS-GH, but not compared to NS-SH conscious mice. Compared to basal CRD, WAS increased VMR at 60 mmHg in the S-SH group and decreased it at 30–60 mmHg in NS-GH mice, while having no effect in NS-SH mice. The average defecation during the hour of repeated WAS over 10 days was 1.9 and 2.4 fold greater in S-SH vs. NS-GH and NS-SH mice, respectively. These data indicate that the combination of S-SH required for VMR monitoring with EMG is an important component of repeated WAS-induced post-stress visceral hypersensitivity and defecation in mice. PMID:20536336

Impact of salt exposure on N-acetylgalactosamine-4-sulfatase (arylsulfatase B) activity, glycosaminoglycans, kininogen, and bradykinin.

PubMed

Kotlo, Kumar; Bhattacharyya, Sumit; Yang, Bo; Feferman, Leonid; Tejaskumar, Shah; Linhardt, Robert; Danziger, Robert; Tobacman, Joanne K

2013-10-01

N-acetylgalactosamine-4-sulfatase (Arylsulfatase B; ARSB) is the enzyme that removes sulfate groups from the N-acetylgalactosamine-4-sulfate residue at the non-reducing end of chondroitin-4-sulfate (C4S) and dermatan sulfate (DS). Previous studies demonstrated reduction in cell-bound high molecular weight kininogen in normal rat kidney (NRK) epithelial cells when chondroitin-4-sulfate content was reduced following overexpression of ARSB activity, and chondroitinase ABC produced similar decline in cell-bound kininogen. Reduction in the cell-bound kininogen was associated with increase in secreted bradykinin. In this report, we extend the in vitro findings to in vivo models, and present findings in Dahl salt-sensitive (SS) rats exposed to high (SSH) and low salt (SSL) diets. In the renal tissue of the SSH rats, ARSB activity was significantly less than in the SSL rats, and chondroitin-4-sulfate and total sulfated glycosaminoglycan content were significantly greater. Disaccharide analysis confirmed marked increase in C4S disaccharides in the renal tissue of the SSH rats. In contrast, unsulfated, hyaluronan-derived disaccharides were increased in the rats on the low salt diet. In the SSH rats, with lower ARSB activity and higher C4S levels, cell-bound, high-molecular weight kininogen was greater and urinary bradykinin was lower. ARSB activity in renal tissue and NRK cells declined when exogenous chloride concentration was increased in vitro. The impact of high chloride exposure in vivo on ARSB, chondroitin-4-sulfation, and C4S-kininogen binding provides a mechanism that links dietary salt intake with bradykinin secretion and may be a factor in blood pressure regulation.

Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico

PubMed Central

Maga, A. Murat; Navarro, Nicolas; Cunningham, Michael L.; Cox, Timothy C.

2015-01-01

We describe the first application of high-resolution 3D micro-computed tomography, together with 3D landmarks and geometric morphometrics, to map QTL responsible for variation in skull shape and size using a backcross between C57BL/6J and A/J inbred strains. Using 433 animals, 53 3D landmarks, and 882 SNPs from autosomes, we identified seven QTL responsible for the skull size (SCS.qtl) and 30 QTL responsible for the skull shape (SSH.qtl). Size, sex, and direction-of-cross were all significant factors and included in the analysis as covariates. All autosomes harbored at least one SSH.qtl, sometimes up to three. Effect sizes of SSH.qtl appeared to be small, rarely exceeding 1% of the overall shape variation. However, they account for significant amount of variation in some specific directions of the shape space. Many QTL have stronger effect on the neurocranium than expected from a random vector that will parcellate uniformly across the four cranial regions. On the contrary, most of QTL have an effect on the palate weaker than expected. Combined interval length of 30 SSH.qtl was about 315 MB and contained 2476 known protein coding genes. We used a bioinformatics approach to filter these candidate genes and identified 16 high-priority candidates that are likely to play a role in the craniofacial development and disorders. Thus, coupling the QTL mapping approach in model organisms with candidate gene enrichment approaches appears to be a feasible way to identify high-priority candidates genes related to the structure or tissue of interest. PMID:25859222

Real-time Assimilation of Altimeter Derived Synthetic Profiles Into a Global version of the Naval Research Laboratory's Coastal Ocean Model (NCOM)

NASA Astrophysics Data System (ADS)

Rhodes, R. C.; Barron, C. N.; Fox, D. N.; Smedstad, L. F.

2001-12-01

A global implementation of the Navy Coastal Ocean Model (NCOM), developed by the Naval Research Laboratory (NRL) at Stennis Space Center is currently running in real-time and is planned for transition to the Naval Oceanographic Office (NAVOCEANO) in 2002. The model encompasses the open ocean to 5 m depth on a curvilinear global model grid with 1/8 degree grid spacing at 45N, extending from 80 S to a complete arctic cap with grid singularities mapped into Canada and Russia. Vertically, the model employs 41 sigma-z levels with sigma in the upper-ocean and coastal regions and z in the deeper ocean. The Navy Operational Global Atmospheric Prediction System (NOGAPS) provides 6-hourly wind stresses and heat fluxes for forcing, while the operational Modular Ocean Data Assimilation System (MODAS) provides the background climatology and tools for data pre-processing. Operationally available sea surface temperature (SST) and altimetry (SSH) data are assimilated into the NAVOCEANO global 1/8 degree MODAS 2-D analysis and the 1/16 degree Navy Layered Ocean Model (NLOM) to provide analyses and forecasts of SSH and SST. The 2-D SSH and SST nowcast fields are used as input to the MODAS synthetic climatology database to yield three-dimensional fields of synthetic temperature and salinity for assimilation into global NCOM. The synthetic profiles are weighted higher at depth in the assimilation process to allow the numerical model to properly develop the mixed-layer structure driven by the real-time atmospheric forcing. Global NCOM nowcasts and forecasts provide a valuable resource for rapid response to the varied and often unpredictable operational requests for 3-dimensional fields of ocean temperature, salinity, and currents. In some cases, the resolution of the global product is sufficient for guidance. In cases requiring higher resolution, the global product offers a quick overview of local circulation and provides initial and boundary conditions for higher resolution coastal models that may be more specialized for a particular task or domain. Nowcast and forecast results are presented globally and in selected areas of interest and model results are compared with historical and concurrent observations and analyses.

Anomalous circulation in the Pacific sector of the Arctic Ocean in July-December 2008

NASA Astrophysics Data System (ADS)

Panteleev, G.; Francis, O. P.; Yaremchuk, M.; Zhang, J.; Kulakov, M.; Onat, Y.

2017-12-01

Variability of the mean summer-fall ocean state in the Pacific Sector of the Arctic Ocean (PSAO) is studied using a dynamically constrained synthesis (4Dvar) of historical in situ observations collected during 1972 to 2008. Specifically, the oceanic response to the cyclonic (1989-1996) and anticyclonic (1972-1978, 1997-2006) phases o f the Arctic Ocean Oscillation (AOO) is assessed for the purpose of quantitatively comparing the 2008 circulation pattern that followed the 2007 ice cover minimum.It is shown that the PSAO circulation during July-December of 2008 was characterized by a pronounced negative Sea Surface Height (SSH) anomaly along theEurasian shelf break, which caused a significant decline of the transport in the Atlantic Water (AW) inflow region into the PSAO and increased the sea level difference betweenthe Bering and Chukchi Seas. This anomaly could be one of the reasons for the observed amplification of the Bering Strait transport carrying fresh Pacific Waters into the PSAO. Largrangian analysis of the optimized solution suggests that the freshwater (FW) accumulation in the Beaufort Gyre has a negligible contribution from the East Siberian Sea and is likely caused by the enhanced FW export from the region north of the Canadian Archipelago/Greenland.The inverse modeling results are confirmed by validation against independent altimetry observations and in situ velocity data from NABOS moorings. It is also shown that presented results are in significantly better agreement with the data than the output of the PIOMAS model run utilized as a first guess solution for the 4dVar analysis.

Geodesic detection of Agulhas rings

NASA Astrophysics Data System (ADS)

Beron-Vera, F. J.; Wang, Y.; Olascoaga, M. J.; Goni, G. J.; Haller, G.

2012-12-01

Mesoscale oceanic eddies are routinely detected from instantaneous velocities. While simple to implement, this Eulerian approach gives frame-dependent results and often hides true material transport by eddies. Building on the recent geodesic theory of transport barriers, we develop an objective (i.e., frame-independent) method for accurately locating coherent Lagrangian eddies. These eddies act as compact water bodies, with boundaries showing no leakage or filamentation over long periods of time. Applying the algorithm to altimetry-derived velocities in the South Atlantic, we detect, for the first time, Agulhas rings that preserve their material coherence for several months, while eddy candidates yielded by other approaches tend to disperse or leak within weeks. These findings suggest that current Eulerian estimates of the Agulhas leakage need significant revision.Temporal evolution of fluid patches identified as eddies by different methods. First column: eddies extracted using geodesic eddy identification [1,2]. Second column: eddies identified from sea surface height (SSH) using the methodology of Chelton et al. [2] with U/c > 1. Third column: eddies identified as elliptic regions by the Okubo-Weiss (OW) criterion [e.g., 3]. Fourth column: eddies identified as mesoelliptic (ME) regions by Mezic et al.'s [4] criterion. References: [1] Beron-Vera et al. (2012). Geodesic eddy detection suggests reassessment of Agulhas leakage. Proc. Nat. Acad. Sci. USA, submitted. [2] Haller & Beron-Vera (2012). Geodesic theory of transport barriers in two-dimensional flows. Physica D, in press. [2] Chelton et al. (2011). Prog. Oceanog. 91, 167. [3] Chelton et al. (2007). Geophys. Res. Lett. 34, L5606. [4] Mezic et al. (2010). Science 330, 486.

On the dynamics of the Sri Lanka Dome in the Bay of Bengal

NASA Astrophysics Data System (ADS)

Burns, Jessica M.; Subrahmanyam, Bulusu; Murty, V. S. N.

2017-09-01

East of Sri Lanka, in the northern Indian Ocean, a cold dome, known as the Sri Lanka Dome (SLD), develops during southwest monsoon season (June-September). The SLD first forms around May, matures in July, and decays around September, in association with the strong cyclonic wind stress curl. In this study, the structure and dynamics of SLD in response to the climatic events such as the Indian Ocean Dipole (IOD) are examined. Our results reveal that these climatic events modulated the subsurface temperature variability in the thermocline at ˜100 m depth, whose signature was also evident in the satellite-derived sea surface height (SSH) anomaly in the SLD region. We find that the mechanisms for the formation of SLD are consistent with previous research, and there is year-to-year variability in the SLD dynamics. This study also reveals that the atmospheric parameters including vertical wind shear and midtropospheric relative humidity are high over the SLD region and adjacent southern Bay of Bengal and show an upward (increasing) trend over the decades. This has impacted the atmospheric parameters over the northern Bay of Bengal over the decades and as a consequence the total number of monsoon depressions (June-September) decreased over the decades from 1980 to 2015, as reported by the India Meteorological Department, New Delhi. Thus, the new insight emerged from this study is the variability in the cyclogenesis and the occurrence of total number of monsoon depressions over northern Bay of Bengal over the decades is much related to the SLD dynamics.

[Comparisons of different methods for virus-elimination of edible fungi].

PubMed

Zhang, Chao-hui; Liu, Ying-miao; Qi, Yuan-cheng; Gao, Yu-qian; Shen, Jin-wen; Qiu, Li-you

2010-05-01

Four dsRNA bands were extracted from Pleurotus ostreatus TD300 by the dsRNA isolation technique with sizes of 8.2 kb, 2.5 kb, 2.1 kb, and 1.1 kb, respectively. Four virus-eliminated methods, i. e. hyphal tips cut (HTC), protoplast regeneration (PR), single spore hybridization (SSH), and frozen and lyophilized (FL), were applied to prepare virus-eliminated strains, and one virus-eliminated strain was selected for each virus-elimination method. The virus-eliminated strains were named as HTC8, PR15, FL01, and SSH11, respectively. There were low concentration of 8.2 kb dsRNA remained in HTC8, as well as low concentration of 8.2 kb and 2.5 kb dsRNA remained in FL01. However, no dsRNA remained in PR15 and SSH11. The hyphal growth rate and laccase activity of the virus-eliminated strains increased, especially HTC8 and PR15, whose hyphal growth rate was higher by 22.73% and 18.18%, and laccase activities higher by 145.83% and 134.38% than that of the original strain, respectively. The conclusion is that hyphal tips cut and protoplast regeneration are suitable to prepare virus-eliminated strains of edible fungi.

Identification of sennoside A as a novel inhibitor of the slingshot (SSH) family proteins related to cancer metastasis.

PubMed

Lee, Seon Young; Kim, Wooil; Lee, Young Geun; Kang, Hyo Jin; Lee, Sang-Hyun; Park, Sun Young; Min, Jeong-Ki; Lee, Sang-Rae; Chung, Sang J

2017-05-01

Phospho-cofilin (p-cofilin), which has a phosphate group on Ser-3, is involved in actin polymerization. Its dephosphorylated form promotes filopodia formation and cell migration by enhancing actin depolymerization. Protein phosphatase slingshot homologs (SSHs), known as dual-specificity phosphatases, catalyze hydrolytic removal of the Ser-3 phosphate group from phospho-cofilin. Aberrant SSH activity results in cancer metastasis, implicating SSHs as potential therapeutic targets for cancer metastasis. In this study, we screened 658 natural products purified from traditional oriental medicinal plants to identify three potent SSH inhibitors with submicromolar or single-digit micromolar K i values: gossypol, hypericin, and sennoside A. The three compounds were purified from cottonseed, Saint John's wort, and rhubarb, respectively. Sennoside A markedly increased cofilin phosphorylation in pancreatic cancer cells, leading to impaired actin dynamics in pancreatic cancer cells with or without EGF stimulation and reduced motility and invasiveness in vitro and in vivo. Collaboratively, these results demonstrate that sennoside A is a novel inhibitor of SSHs and suggest that it may be valuable in the development of pharmaceutical drugs for treating cancer metastasis. Copyright © 2017 Elsevier Ltd. All rights reserved.

Efficient ensemble system based on the copper binding motif for highly sensitive and selective detection of cyanide ions in 100% aqueous solutions by fluorescent and colorimetric changes.

PubMed

Jung, Kwan Ho; Lee, Keun-Hyeung

2015-09-15

A peptide-based ensemble for the detection of cyanide ions in 100% aqueous solutions was designed on the basis of the copper binding motif. 7-Nitro-2,1,3-benzoxadiazole-labeled tripeptide (NBD-SSH, NBD-SerSerHis) formed the ensemble with Cu(2+), leading to a change in the color of the solution from yellow to orange and a complete decrease of fluorescence emission. The ensemble (NBD-SSH-Cu(2+)) sensitively and selectively detected a low concentration of cyanide ions in 100% aqueous solutions by a colorimetric change as well as a fluorescent change. The addition of cyanide ions instantly removed Cu(2+) from the ensemble (NBD-SSH-Cu(2+)) in 100% aqueous solutions, resulting in a color change of the solution from orange to yellow and a "turn-on" fluorescent response. The detection limits for cyanide ions were lower than the maximum allowable level of cyanide ions in drinking water set by the World Health Organization. The peptide-based ensemble system is expected to be a potential and practical way for the detection of submicromolar concentrations of cyanide ions in 100% aqueous solutions.

PyPele Rewritten To Use MPI

NASA Technical Reports Server (NTRS)

Hockney, George; Lee, Seungwon

2008-01-01

A computer program known as PyPele, originally written as a Pythonlanguage extension module of a C++ language program, has been rewritten in pure Python language. The original version of PyPele dispatches and coordinates parallel-processing tasks on cluster computers and provides a conceptual framework for spacecraft-mission- design and -analysis software tools to run in an embarrassingly parallel mode. The original version of PyPele uses SSH (Secure Shell a set of standards and an associated network protocol for establishing a secure channel between a local and a remote computer) to coordinate parallel processing. Instead of SSH, the present Python version of PyPele uses Message Passing Interface (MPI) [an unofficial de-facto standard language-independent application programming interface for message- passing on a parallel computer] while keeping the same user interface. The use of MPI instead of SSH and the preservation of the original PyPele user interface make it possible for parallel application programs written previously for the original version of PyPele to run on MPI-based cluster computers. As a result, engineers using the previously written application programs can take advantage of embarrassing parallelism without need to rewrite those programs.

Isolation, identification and expression analysis of salt-induced genes in Suaeda maritima, a natural halophyte, using PCR-based suppression subtractive hybridization

PubMed Central

Sahu, Binod B; Shaw, Birendra P

2009-01-01

Background Despite wealth of information generated on salt tolerance mechanism, its basics still remain elusive. Thus, there is a need of continued effort to understand the salt tolerance mechanism using suitable biotechnological techniques and test plants (species) to enable development of salt tolerant cultivars of interest. Therefore, the present study was undertaken to generate information on salt stress responsive genes in a natural halophyte, Suaeda maritima, using PCR-based suppression subtractive hybridization (PCR-SSH) technique. Results Forward and reverse SSH cDNA libraries were constructed after exposing the young plants to 425 mM NaCl for 24 h. From the forward SSH cDNA library, 429 high quality ESTs were obtained. BLASTX search and TIGR assembler programme revealed overexpression of 167 unigenes comprising 89 singletons and 78 contigs with ESTs redundancy of 81.8%. Among the unigenes, 32.5% were found to be of special interest, indicating novel function of these genes with regard to salt tolerance. Literature search for the known unigenes revealed that only 17 of them were salt-inducible. A comparative analysis of the existing SSH cDNA libraries for NaCl stress in plants showed that only a few overexpressing unigenes were common in them. Moreover, the present study also showed increased expression of phosphoethanolamine N-methyltransferase gene, indicating the possible accumulation of a much studied osmoticum, glycinebetaine, in halophyte under salt stress. Functional categorization of the proteins as per the Munich database in general revealed that salt tolerance could be largely determined by the proteins involved in transcription, signal transduction, protein activity regulation and cell differentiation and organogenesis. Conclusion The study provided a clear indication of possible vital role of glycinebetaine in the salt tolerance process in S. maritima. However, the salt-induced expression of a large number of genes involved in a wide range of cellular functions was indicative of highly complex nature of the process as such. Most of the salt inducible genes, nonetheless, appeared to be species-specific. In light of the observations made, it is reasonable to emphasize that a comparative analysis of ESTs from SSH cDNA libraries generated systematically for a few halophytes with varying salt exposure time may clearly identify the key salt tolerance determinant genes to a minimum number, highly desirable for any genetic manipulation adventure. PMID:19497134

KSC-04PD-2216

NASA Technical Reports Server (NTRS)

2004-01-01

KENNEDY SPACE CENTER, FLA. This panel comprising former and current Safety and Mission Assurance (S&MA) management talk about identifying and comparing safety challenges of the past, present and future during Spaceport Super Safety and Health Day (SS&H) at KSC. Larry Crawford, left, is director of S&MA. SS&H Day included guest speakers Dr. Pamela Peeke, Navy Com. Stephen E. Iwanowicz, NASAs Dr. Kristine Calderon and Olympic-great Bruce Jenner. In addition, many vendors exhibits were on display for employees. Super Safety and Health Day was initiated at KSC in 1998 to increase awareness of the importance of safety and health among the government and contractor workforce. The theme for this years event was Safety and Health: A Winning Combination.

Pyrolysis of sunflower seed hulls for obtaining bio-oils.

PubMed

Casoni, Andrés I; Bidegain, Maximiliano; Cubitto, María A; Curvetto, Nestor; Volpe, María A

2015-02-01

Bio-oils from pyrolysis of as received sunflower seed hulls (SSH), hulls previously washed with acid (SSHA) and hulls submitted to a mushroom enzymatic attack (BSSH) were analyzed. The concentration of lignin, hemicellulose and cellulose varied with the pre-treatment. The liquid corresponding to SSH presented a relatively high concentration of acetic acid and a high instability to storage. The bio-oil from SSHA showed a high concentration of furfural and an appreciable amount of levoglucosenone. Lignin was degraded upon enzymatic activity, for this reason BSSH led to the highest yield of bio-oil, with relative high concentration of acetic acid and stability to storage. Copyright © 2014 Elsevier Ltd. All rights reserved.

Remote observing with NASA's Deep Space Network

NASA Astrophysics Data System (ADS)

Kuiper, T. B. H.; Majid, W. A.; Martinez, S.; Garcia-Miro, C.; Rizzo, J. R.

2012-09-01

The Deep Space Network (DSN) communicates with spacecraft as far away as the boundary between the Solar System and the interstellar medium. To make this possible, large sensitive antennas at Canberra, Australia, Goldstone, California, and Madrid, Spain, provide for constant communication with interplanetary missions. We describe the procedures for radioastronomical observations using this network. Remote access to science monitor and control computers by authorized observers is provided by two-factor authentication through a gateway at the Jet Propulsion Laboratory (JPL) in Pasadena. To make such observations practical, we have devised schemes based on SSH tunnels and distributed computing. At the very minimum, one can use SSH tunnels and VNC (Virtual Network Computing, a remote desktop software suite) to control the science hosts within the DSN Flight Operations network. In this way we have controlled up to three telescopes simultaneously. However, X-window updates can be slow and there are issues involving incompatible screen sizes and multi-screen displays. Consequently, we are now developing SSH tunnel-based schemes in which instrument control and monitoring, and intense data processing, are done on-site by the remote DSN hosts while data manipulation and graphical display are done at the observer's host. We describe our approaches to various challenges, our experience with what worked well and lessons learned, and directions for future development.

The mining of pearl formation genes in pearl oyster Pinctada fucata by cDNA suppression subtractive hybridization.

PubMed

Wang, Ning; Kinoshita, Shigeharu; Nomura, Naoko; Riho, Chihiro; Maeyama, Kaoru; Nagai, Kiyohito; Watabe, Shugo

2012-04-01

Recent researches revealed the regional preference of biomineralization gene transcription in the pearl oyster Pinctada fucata: it transcribed mainly the genes responsible for nacre secretion in mantle pallial, whereas the ones regulating calcite shells expressed in mantle edge. This study took use of this character and constructed the forward and reverse suppression subtractive hybridization (SSH) cDNA libraries. A total of 669 cDNA clones were sequenced and 360 expressed sequence tags (ESTs) greater than 100 bp were generated. Functional annotation associated 95 ESTs with specific functions, and 79 among them were identified from P. fucata at the first time. In the forward SSH cDNA library, it recognized mass amount of nacre protein genes, biomineralization genes dominantly expressed in the mantle pallial, calcium-ion-binding genes, and other biomineralization-related genes important for pearl formation. Real-time PCR showed that all the examined genes were distributed in oyster mantle tissues with a consistence to the SSH design. The detection of their RNA transcripts in pearl sac confirmed that the identified genes were certainly involved in pearl formation. Therefore, the data from this work will initiate a new round of pearl formation gene study and shed new insights into molluscan biomineralization.

Biological Hydropersulfides and Related Polysulfides: A New Concept and Perspective in Redox Biology.

PubMed

Fukuto, Jon M; Ignarro, Louis J; Nagy, Peter; Wink, David A; Kevil, Christopher G; Feelisch, Martin; Cortese-Krott, Miriam M; Bianco, Christopher L; Kumagai, Yoshito; Hobbs, Adrian J; Lin, Joseph; Ida, Tomoaki; Akaike, Takaaki

2018-05-12

The chemical biology of thiols (RSH, e.g., cysteine and cysteine containing proteins/peptides) has been a topic of extreme interest for many decades due to their reported roles in protein structure/folding, redox signaling, metal ligation, cellular protection and enzymology. While many of the studies on thiol/sulfur biochemistry have focused on thiols, relatively ignored have been hydropersulfides (RSSH) and higher order polysulfur species (RSS n H, RSS n R, n > 1). Recent and provocative work has alluded to the prevalence and likely physiological importance of RSSH and related RSS n H. RSSH of cysteine (Cys-SSH) has been found to be prevalent in mammalian systems along with Cys-SSH-containing proteins. The RSSH functionality has not been examined to the extent of other biologically relevant sulfur derivatives (e.g., sulfenic acids, disulfides, etc.), whose roles in cell signaling are strongly indicated. The recent finding of Cys-SSH biosynthesis and translational incorporation into proteins is an unequivocal indication of its fundamental importance and necessitates a more profound look into the physiology of RSSH. In this Review, we discuss the currently reported chemical biology of RSSH (and related species) as a prelude to discussing their possible physiological roles. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

A Study on the Relationships among Surface Variables to Adjust the Height of Surface Temperature for Data Assimilation.

NASA Astrophysics Data System (ADS)

Kang, J. H.; Song, H. J.; Han, H. J.; Ha, J. H.

2016-12-01

The observation processing system, KPOP (KIAPS - Korea Institute of Atmospheric Prediction Systems - Package for Observation Processing) have developed to provide optimal observations to the data assimilation system for the KIAPS Integrated Model (KIM). Currently, the KPOP has capable of processing almost all of observations for the KMA (Korea Meteorological Administration) operational global data assimilation system. The height adjustment of SURFACE observations are essential for the quality control due to the difference in height between observation station and model topography. For the SURFACE observation, it is usual to adjust the height using lapse rate or hypsometric equation, which decides values mainly depending on the difference of height. We have a question of whether the height can be properly adjusted following to the linear or exponential relationship solely with regard to the difference of height, with disregard the atmospheric conditions. In this study, firstly we analyse the change of surface variables such as temperature (T2m), pressure (Psfc), humidity (RH2m and Q2m), and wind components (U and V) according to the height difference. Additionally, we look further into the relationships among surface variables . The difference of pressure shows a strong linear relationship with difference of height. But the difference of temperature according to the height shows a significant correlation with difference of relative humidity than with the height difference. A development of reliable model for the height-adjustment of surface temperature is being undertaken based on the preliminary results.

Gene-expression profiling using suppression-subtractive hybridization and cDNA microarray in rat mononuclear cells in response to welding-fume exposure.

PubMed

Rim, Kyung Taek; Park, Kun Koo; Sung, Jae Hyuck; Chung, Yong Hyun; Han, Jeong Hee; Cho, Key Seung; Kim, Kwang Jong; Yu, Il Je

2004-06-01

Welders with radiographic pneumoconiosis abnormalities have shown a gradual clearing of the X-ray identified effects following removal from exposure. In some cases, the pulmonary fibrosis associated with welding fumes appears in a more severe form in welders. Accordingly, for the early detection of welding-fume-exposure-induced pulmonary fibrosis, the gene expression profiles of peripheral mononuclear cells from rats exposed to welding fumes were studied using suppression-subtractive hybridization (SSH) and a cDNA microarray. As such, Sprague-Dawley rats were exposed to a stainless steel arc welding fume for 2 h/day in an inhalation chamber with a 1107.5 +/- 2.6 mg/m3 concentration of total suspended particulate (TSP) for 30 days. Thereafter, the total RNA was extracted from the peripheral blood mononuclear cells, the cDNA synthesized from the total RNA using the SMART PCR cDNA method, and SSH performed to select the welding-fume-exposure-regulated genes. The cDNAs identified by the SSH were then cloned into a plasmid miniprep, sequenced and the sequences analysed using the NCBI BLAST programme. In the SSH cloned cDNA microarray analysis, five genes were found to increase their expression by 1.9-fold or more, including Rgs 14, which plays an important function in cellular signal transduction pathways; meanwhile 36 genes remained the same and 30 genes decreased their expression by more than 59%, including genes associated with the immune response, transcription factors and tyrosine kinases. Among the 5200 genes analysed, 256 genes (5.1%) were found to increase their gene expression, while 742 genes (15%) decreased their gene expression in response to the welding-fume exposure when tested using a commercial 5.0k DNA microarray. Therefore, unlike exposure to other toxic substances, prolonged welding-fume exposure was found to substantially downregulate many genes.

The Neurobiological Mechanism of Chemical Aversion (Emetic) Therapy for Alcohol Use Disorder: An fMRI Study

PubMed Central

Elkins, Ralph L.; Richards, Todd L.; Nielsen, Robert; Repass, Richard; Stahlbrandt, Henriettae; Hoffman, Hunter G.

2017-01-01

A recent NIH epidemiology study found the lifetime prevalence of alcohol use disorder in the United States to be 29%. Alcohol drinking behavior is strongly “learned” via pleasure center activation/reinforcement. Alcohol craving is a powerful desire to drink alcoholic beverages. Craving was added as one of the defining criteria for alcohol use disorder in DSM5, and craving reduction is becoming an increasingly important treatment goal. In the current study, patients with alcohol use disorder received 10 days of inpatient multi-modal treatments at Schick Shadel Hospital (SSH) of Seattle. The treatments included five chemical aversion conditioning sessions that associated alcohol cues (and alcohol) with nausea and emesis. All patients met DSM4 criteria for alcohol use disorder, were heavy drinkers, and reported craving alcohol pre-treatment. Craving reduction was one of the primary treatment goals. This is the first fMRI study to measure the effects of chemical aversion therapy on alcohol craving-related brain activity. Patients were recruited as subjects for the University of Washington (UW) brain scan study following SSH admission but before treatment onset. Prior to treatment, patients reported craving/desire for alcohol. After treatment (after four SSH chemical aversion treatments, again after five SSH chemical treatments, 30 and 90-days post-discharge), these same patients reported avoidance/aversion to alcohol. Most of the participants (69%) reported being still sober 12 months post-treatment. Consistent with a craving reduction mechanism of how chemical aversion therapy facilitates sobriety, results of the UW fMRI brain scans showed significant pre- to post-treatment reductions in craving-related brain activity in the occipital cortex. Additional fMRI brain scan studies are needed to further explore the neurobiological mechanism of chemical aversion therapy treatment for alcohol use disorder, and other substance use disorders for which chemical aversion therapy is used (e.g., opioid dependence and cocaine dependence). Substance use disorders are estimated to affect well over one billion people worldwide. PMID:29033802

Sea level hazards: Altimetric monitoring of tsunamis and sea level rise

NASA Astrophysics Data System (ADS)

Hamlington, Benjamin Dillon

Whether on the short timescale of an impending tsunami or the much longer timescale of climate change-driven sea level rise, the threat stemming from rising and inundating ocean waters is a great concern to coastal populations. Timely and accurate observations of potentially dangerous changes in sea level are vital in determining the precautionary steps that need to be taken in order to protect coastal communities. While instruments from the past have provided in situ measurements of sea level at specific locations across the globe, satellites can be used to provide improved spatial and temporal sampling of the ocean in addition to producing more accurate measurements. Since 1993, satellite altimetry has provided accurate measurements of sea surface height (SSH) with near-global coverage. Not only have these measurements led to the first definitive estimates of global mean sea level rise, satellite altimetry observations have also been used to detect tsunami waves in the open ocean where wave amplitudes are relatively small, a vital step in providing early warning to those potentially affected by the impending tsunami. The use of satellite altimetry to monitor two specific sea level hazards is examined in this thesis. The first section will focus on the detection of tsunamis in the open ocean for the purpose of providing early warning to coastal inhabitants. The second section will focus on estimating secular trends using satellite altimetry data with the hope of improving our understanding of future sea level change. Results presented here will show the utility of satellite altimetry for sea level monitoring and will lay the foundation for further advancement in the detection of the two sea level hazards considered.

Variation of Marine Geoid Due to Ocean Circulation and Sea Level Change

NASA Astrophysics Data System (ADS)

Chu, P. C.

2017-12-01

Sea level (S) change and ocean circulation largely affect the gravity field and in turns the marine geoid (N). Difference between the two, D = S - N, is the dynamic ocean topography (DOT), whose gradient represents the large-scale surface geostrophic circulations. Thus, temporal variability of marine geoid (δN) is caused by the sea level change (δS) and the DOT variation (δD), δN = δS - δD. Here, δS is identified from temporally varying satellite altimeter measures; δD is calculated from the change of DOT. For large-scale processes with conservation of potential vorticity, the geostrophic flows take minimum energy state. Based on that, a new elliptic equation is derived in this study to determine D. Here, H is the water depth; and (X, Y) are forcing functions calculated from the in-situ density. The well-posed elliptic equation is integrated numerically on 1o grids for the world oceans with the boundary values taken from the mean DOT (1993-2006) field at the NASA/JPL website: https://grace.jpl.nasa.gov/data/get-data/dynamic-ocean-typography/, the forcing function F calculated from the three-dimensional temperature and salinity of the NOAA National Centers for Environmental Information (NCEI) World Ocean Atlas 2013 version 2, and sea-floor topography (H) from the NOAA ETOPO5. The numerical solution compares reasonably well (relative root mean square difference of 0.09) with the NASA/JPL satellite observation of the difference between the time-averaged sea surface height and the geoid. In-situ ocean measurements of temperature, salinity, and velocity have also rapidly advanced such that the global ocean is now continuously monitored by near 4,000 free-drifting profiling floats (called Argo) from the surface to 2000 m depth with all data being relayed and made publicly available within hours after collection (http://www.argo.ucsd.edu/). This provides a huge database of temperature and salinity and in turns the forcing function F for the governing elliptic equation of DOT. Along with satellite altimetry data, the marine geoid (N) can be updated in a short time period. Further application of this elliptic equation method on the high-precision altimetry measurements of SSH such as the Surface Water and Ocean Topography (SWOT) is also presented.

Docker Container Manager: A Simple Toolkit for Isolated Work with Shared Computational, Storage, and Network Resources

NASA Astrophysics Data System (ADS)

Polyakov, S. P.; Kryukov, A. P.; Demichev, A. P.

2018-01-01

We present a simple set of command line interface tools called Docker Container Manager (DCM) that allow users to create and manage Docker containers with preconfigured SSH access while keeping the users isolated from each other and restricting their access to the Docker features that could potentially disrupt the work of the server. Users can access DCM server via SSH and are automatically redirected to DCM interface tool. From there, they can create new containers, stop, restart, pause, unpause, and remove containers and view the status of the existing containers. By default, the containers are also accessible via SSH using the same private key(s) but through different server ports. Additional publicly available ports can be mapped to the respective ports of a container, allowing for some network services to be run within it. The containers are started from read-only filesystem images. Some initial images must be provided by the DCM server administrators, and after containers are configured to meet one’s needs, the changes can be saved as new images. Users can see the available images and remove their own images. DCM server administrators are provided with commands to create and delete users. All commands were implemented as Python scripts. The tools allow to deploy and debug medium-sized distributed systems for simulation in different fields on one or several local computers.

Coil-to-coil physiological noise correlations and their impact on fMRI time-series SNR

PubMed Central

Triantafyllou, C.; Polimeni, J. R.; Keil, B.; Wald, L. L.

2017-01-01

Purpose Physiological nuisance fluctuations (“physiological noise”) are a major contribution to the time-series Signal to Noise Ratio (tSNR) of functional imaging. While thermal noise correlations between array coil elements have a well-characterized effect on the image Signal to Noise Ratio (SNR0), the element-to-element covariance matrix of the time-series fluctuations has not yet been analyzed. We examine this effect with a goal of ultimately improving the combination of multichannel array data. Theory and Methods We extend the theoretical relationship between tSNR and SNR0 to include a time-series noise covariance matrix Ψt, distinct from the thermal noise covariance matrix Ψ0, and compare its structure to Ψ0 and the signal coupling matrix SSH formed from the signal intensity vectors S. Results Inclusion of the measured time-series noise covariance matrix into the model relating tSNR and SNR0 improves the fit of experimental multichannel data and is shown to be distinct from Ψ0 or SSH. Conclusion Time-series noise covariances in array coils are found to differ from Ψ0 and more surprisingly, from the signal coupling matrix SSH. Correct characterization of the time-series noise has implications for the analysis of time-series data and for improving the coil element combination process. PMID:26756964

Numerical modeling of storm surges in the coast of Mozambique: the cases of tropical cyclones Bonita (1996) and Lisette (1997)

NASA Astrophysics Data System (ADS)

Bié, Alberto José; de Camargo, Ricardo; Mavume, Alberto Francisco; Harari, Joseph

2017-11-01

The coast of Mozambique is often affected by storms, particularly tropical cyclones during summer or sometimes midlatitude systems in the southern part. Storm surges combined with high freshwater discharge can drive huge coastal floods, affecting both urban and rural areas. To improve the knowledge about the impact of storm surges in the coast of Mozambique, this study presents the first attempt to model this phenomenon through the implementation of the Princeton Ocean Model (POM) in the Southwestern Indian Ocean domain (SWIO; 2-32°S, 28-85°E) using a regular grid with 1/6° of spatial resolution and 36 sigma levels. The simulation was performed for the period 1979-2010, and the most interesting events of surges were related to tropical cyclones Bonita (1996) and Lisette (1997) that occurred in the Mozambique Channel. The results showed that the model represented well the amplitude and phase of principal lunar and solar tidal constituents, as well as it captured the spatial pattern and magnitudes of SST with slight positive bias in summer and negative bias in winter months. In terms of SSH, the model underestimated the presence of mesoscale eddies, mainly in the Mozambique Channel. Our results also showed that the atmospheric sea level pressure had a significant contribution to storm heights during the landfall of the tropical cyclones Bonita (1996) and Lisette (1997) in the coast of Mozambique contributing with about 20 and 16% of the total surge height for each case, respectively, surpassing the contribution of the tide-surge nonlinear interactions by a factor of 2.

Overview of Continuing Education Financing and Budgeting.

ERIC Educational Resources Information Center

Shipp, Travis

1982-01-01

Continuing education agencies have cycles of financial activities that are all parts of financial management, including obtaining funding and venture capital, setting fees, and controlling costs for cost recovery. (Author/SSH)

Epistemology, culture, justice and power: non-bioscientific knowledge for medical training.

PubMed

Kuper, Ayelet; Veinot, Paula; Leavitt, Jennifer; Levitt, Sarah; Li, Amanda; Goguen, Jeannette; Schreiber, Martin; Richardson, Lisa; Whitehead, Cynthia R

2017-02-01

While medical curricula were traditionally almost entirely comprised of bioscientific knowledge, widely accepted competency frameworks now make clear that physicians must be competent in far more than biomedical knowledge and technical skills. For example, of the influential CanMEDS roles, six are conceptually based in the social sciences and humanities (SSH). Educators frequently express uncertainty about what to teach in this area. This study concretely identifies the knowledge beyond bioscience needed to support the training of physicians competent in the six non-Medical Expert CanMEDS roles. We interviewed 58 non-clinician university faculty members with doctorates in over 20 SSH disciplines. We abstracted our transcripts (meaning condensation, direct quotations) resulting in approximately 300 pages of data which we coded using top-down (by CanMEDS role) and bottom-up (thematically) approaches and analysed within a critical constructivist framework. Participants and clinicians with SSH PhDs member-checked and refined our results. Twelve interrelated themes were evident in the data. An understanding of epistemology, including the constructed nature of social knowledge, was seen as the foundational theme without which the others could not be taught or understood. Our findings highlighted three anchoring themes (Justice, Power, Culture), all of which link to eight more specific themes concerning future physicians' relationships to the world and the self. All 12 themes were cross-cutting, in that each related to all six non-Medical Expert CanMEDS roles. The data also provided many concrete examples of potential curricular content. There is a definable body of SSH knowledge that forms the academic underpinning for important physician competencies and is outside the experience of most medical educators. Curricular change incorporating such content is necessary if we are to strengthen the non-Medical Expert physician competencies. Our findings, particularly our cross-cutting themes, also provide a pedagogically useful mechanism for holistically teaching the underpinnings of physician competence. We are now implementing our findings into medical curricula. © 2016 John Wiley & Sons Ltd and The Association for the Study of Medical Education.

On the reduction of splash-back

NASA Astrophysics Data System (ADS)

Dickerson, Andrew; Stephen, Jeremy

2017-11-01

The reduction of splash height following the impact of a solid body on a liquid surface is relevant to multiple sectors including military missile entry, industrial processing, and visits to public restrooms. While most studies have viewed splashes in the context of control of impactor shape and surface properties, we here consider the effects of splash height following modification of a liquid surface by surfactants and thin fabrics. Smooth, hydrophilic, free-falling spheres are allowed to impact a quiescent liquid surface of modified surface conditions while filmed with a high-speed camera. We measure splash heights and cavity depths formed by impacting spheres across Froude numbers 3 - 6.5. As expected, lowering the surface tension of the liquid increased splash height with respect to pure water. The introduction of fabric to the surface has an more unpredictable effect. With respect to unaltered impact conditions, ample inclusion of fabric on the surface reduces splash height, while a meager amount of fabric amplifies splashing due to the augmentation of cavity formation preceding a Worthington jet.

New figuring model based on surface slope profile for grazing-incidence reflective optics

DOE PAGES

Zhou, Lin; Huang, Lei; Bouet, Nathalie; ...

2016-08-09

Surface slope profile is widely used in the metrology of grazing-incidence reflective optics instead of surface height profile. Nevertheless, the theoretical and experimental model currently used in deterministic optical figuring processes is based on surface height, not on surface slope. This means that the raw slope profile data from metrology need to be converted to height profile to perform the current height-based figuring processes. The inevitable measurement noise in the raw slope data will introduce significant cumulative error in the resultant height profiles. As a consequence, this conversion will degrade the determinism of the figuring processes, and will have anmore » impact on the ultimate surface figuring results. To overcome this problem, an innovative figuring model is proposed, which directly uses the raw slope profile data instead of the usual height data as input for the deterministic process. In this article, first the influence of the measurement noise on the resultant height profile is analyzed, and then a new model is presented; finally a demonstration experiment is carried out using a one-dimensional ion beam figuring process to demonstrate the validity of our approach.« less

The mean sea surface height and geoid along the Geosat subtrack from Bermuda to Cape Cod

NASA Astrophysics Data System (ADS)

Kelly, Kathryn A.; Joyce, Terrence M.; Schubert, David M.; Caruso, Michael J.

1991-07-01

Measurements of near-surface velocity and concurrent sea level along an ascending Geosat subtrack were used to estimate the mean sea surface height and the Earth's gravitational geoid. Velocity measurements were made on three traverses of a Geosat subtrack within 10 days, using an acoustic Doppler current profiler (ADCP). A small bias in the ADCP velocity was removed by considering a mass balance for two pairs of triangles for which expendable bathythermograph measurements were also made. Because of the large curvature of the Gulf Stream, the gradient wind balance was used to estimate the cross-track component of geostrophic velocity from the ADCP vectors; this component was then integrated to obtain the sea surface height profile. The mean sea surface height was estimated as the difference between the instantaneous sea surface height from ADCP and the Geosat residual sea level, with mesoscale errors reduced by low-pass filtering. The error estimates were divided into a bias, tilt, and mesoscale residual; the bias was ignored because profiles were only determined within a constant of integration. The calculated mean sea surface height estimate agreed with an independent estimate of the mean sea surface height from Geosat, obtained by modeling the Gulf Stream as a Gaussian jet, within the expected errors in the estimates: the tilt error was 0.10 m, and the mesoscale error was 0.044 m. To minimize mesoscale errors in the estimate, the alongtrack geoid estimate was computed as the difference between the mean sea level from the Geosat Exact Repeat Mission and an estimate of the mean sea surface height, rather than as the difference between instantaneous profiles of sea level and sea surface height. In the critical region near the Gulf Stream the estimated error reduction using this method was about 0.07 m. Differences between the geoid estimate and a gravimetric geoid were not within the expected errors: the rms mesoscale difference was 0.24 m rms.

HRD and the Steel-Collar Worker.

ERIC Educational Resources Information Center

Byham, William C.

1984-01-01

The author argues that, as robots begin to take over more and more industrial tasks, the impact on human workers at all levels will increase geometrically and trainers will play a strategic role. (SSH)

Comparative analysis of differential gene expression in kidney tissues of moribund and surviving crucian carp (Carassius auratus gibelio) in response to cyprinid herpesvirus 2 infection.

PubMed

Xu, Lijuan; Podok, Patarida; Xie, Jun; Lu, Liqun

2014-08-01

Cyprinid herpesvirus 2 (CyHV-2) has recently been associated with high mortality of cultured crucian carp (Carassius auratus gibelio) in eastern China. In this study, we established a real-time PCR method to confirm viral infection of crucian carp and to quantify CyHV-2 particles obtained by sucrose gradient centrifugation from diseased fish. Virus-free crucian carp were artificially infected with CyHV-2 using an injection method, which resulted in a dose-dependent death rate. In situ hybridization analysis indicated that there was extensive viral replication and lysis in the kidneys of moribund fish, in contrast to very limited replication in surviving fish. To probe the host immune response to viral infection at the level of gene expression, we identified virus-responsive genes using suppression subtractive hybridization (SSH) in head kidney tissues, the principal immune organ of fish, from moribund and surviving crucian carps after viral challenge. From the moribund SSH library, 363 expressed sequence tags (ESTs) were clustered to 234 unigenes (including 15 singletons and 45 contigs). From the survivor SSH library, 599 ESTs was clustered to 549 unigenes (including 107 singletons and 105 contigs). We further analyzed the transcriptional levels of all immune-related genes by quantitative real-time RT-PCR, which confirmed the upregulation of 90.48 % of these genes. The significantly upregulated immune-related genes identified in this study can serve as candidate marker genes for acute CyHV-2 infection.

Cadmium induces cadmium-tolerant gene expression in the filamentous fungus Trichoderma harzianum.

PubMed

Cacciola, Santa O; Puglisi, Ivana; Faedda, Roberto; Sanzaro, Vincenzo; Pane, Antonella; Lo Piero, Angela R; Evoli, Maria; Petrone, Goffredo

2015-11-01

The filamentous fungus Trichoderma harzianum, strain IMI 393899, was able to grow in the presence of the heavy metals cadmium and mercury. The main objective of this research was to study the molecular mechanisms underlying the tolerance of the fungus T. harzianum to cadmium. The suppression subtractive hybridization (SSH) method was used for the characterization of the genes of T. harzianum implicated in cadmium tolerance compared with those expressed in the response to the stress induced by mercury. Finally, the effects of cadmium exposure were also validated by measuring the expression levels of the putative genes coding for a glucose transporter, a plasma membrane ATPase, a Cd(2+)/Zn(2+) transporter protein and a two-component system sensor histidine kinase YcbA, by real-time-PCR. By using the aforementioned SSH strategy, it was possible to identify 108 differentially expressed genes of the strain IMI 393899 of T. harzianum grown in a mineral substrate with the addition of cadmium. The expressed sequence tags identified by SSH technique were encoding different genes that may be involved in different biological processes, including those associated to primary and secondary metabolism, intracellular transport, transcription factors, cell defence, signal transduction, DNA metabolism, cell growth and protein synthesis. Finally, the results show that in the mechanism of tolerance to cadmium a possible signal transduction pathway could activate a Cd(2+)/Zn(2+) transporter protein and/or a plasma membrane ATPase that could be involved in the compartmentalization of cadmium inside the cell.

An atlas of monthly mean distributions of SSMI surface wind speed, AVHRR/2 sea surface temperature, AMI surface wind velocity, TOPEX/POSEIDON sea surface height, and ECMWF surface wind velocity during 1993

NASA Technical Reports Server (NTRS)

Halpern, D.; Fu, L.; Knauss, W.; Pihos, G.; Brown, O.; Freilich, M.; Wentz, F.

1995-01-01

The following monthly mean global distributions for 1993 are presented with a common color scale and geographical map: 10-m height wind speed estimated from the Special Sensor Microwave Imager (SSMI) on a United States (U.S.) Air Force Defense Meteorological Satellite Program (DMSP) spacecraft; sea surface temperature estimated from the Advanced Very High Resolution Radiometer (AVHRR/2) on a U.S. National Oceanic and Atmospheric Administration (NOAA) satellite; 10-m height wind speed and direction estimated from the Active Microwave Instrument (AMI) on the European Space Agency (ESA) European Remote Sensing (ERS-1) satellite; sea surface height estimated from the joint U.S.-France Topography Experiment (TOPEX)/POSEIDON spacecraft; and 10-m height wind speed and direction produced by the European Center for Medium-Range Weather Forecasting (ECMWF). Charts of annual mean, monthly mean, and sampling distributions are displayed.

Effect of Surface Roughness on Characteristics of Spherical Shock Waves

NASA Technical Reports Server (NTRS)

Huber, Paul W.; McFarland, Donald R.

1959-01-01

Measurements of peak overpressure and Mach stem height were made at four burst heights. Data were obtained with instrumentation capable of directly observing the variation of shock wave movement with time. Good similarity of free air shock peak overpressure with larger scale data was found to exist. The net effect of surface roughness on shock peak overpressures slightly. Surface roughness delayed the Mach stem formation at the greatest charge height and lowered the growth at all burst heights. A similarity parameter was found which approximately correlates the triple point path at different burst heights.

Reflections on a Bouncing Ball

ERIC Educational Resources Information Center

Rohr, Jim; Lopez, Veronica; Rohr, Tyler

2014-01-01

While observing the bounce heights of various kinds of sports balls dropped from different heights onto a variety of surfaces, we thought of the following question: Could measurements of drop and bounce heights of balls of different diameters, but of the same material, falling from different heights, but on the same surface, be expressed by a…

Brain structure mediates the association between height and cognitive ability.

PubMed

Vuoksimaa, Eero; Panizzon, Matthew S; Franz, Carol E; Fennema-Notestine, Christine; Hagler, Donald J; Lyons, Michael J; Dale, Anders M; Kremen, William S

2018-05-11

Height and general cognitive ability are positively associated, but the underlying mechanisms of this relationship are not well understood. Both height and general cognitive ability are positively associated with brain size. Still, the neural substrate of the height-cognitive ability association is unclear. We used a sample of 515 middle-aged male twins with structural magnetic resonance imaging data to investigate whether the association between height and cognitive ability is mediated by cortical size. In addition to cortical volume, we used genetically, ontogenetically and phylogenetically distinct cortical metrics of total cortical surface area and mean cortical thickness. Height was positively associated with general cognitive ability and total cortical volume and cortical surface area, but not with mean cortical thickness. Mediation models indicated that the well-replicated height-general cognitive ability association is accounted for by individual differences in total cortical volume and cortical surface area (highly heritable metrics related to global brain size), and that the genetic association between cortical surface area and general cognitive ability underlies the phenotypic height-general cognitive ability relationship.

Height Control and Deposition Measurement for the Electron Beam Free Form Fabrication (EBF3) Process

NASA Technical Reports Server (NTRS)

Hafley, Robert A. (Inventor); Seufzer, William J. (Inventor)

2017-01-01

A method of controlling a height of an electron beam gun and wire feeder during an electron freeform fabrication process includes utilizing a camera to generate an image of the molten pool of material. The image generated by the camera is utilized to determine a measured height of the electron beam gun relative to the surface of the molten pool. The method further includes ensuring that the measured height is within the range of acceptable heights of the electron beam gun relative to the surface of the molten pool. The present invention also provides for measuring a height of a solid metal deposit formed upon cooling of a molten pool. The height of a single point can be measured, or a plurality of points can be measured to provide 2D or 3D surface height measurements.

Ram-air sample collection device for a chemical warfare agent sensor

DOEpatents

Megerle, Clifford A.; Adkins, Douglas R.; Frye-Mason, Gregory C.

2002-01-01

In a surface acoustic wave sensor mounted within a body, the sensor having a surface acoustic wave array detector and a micro-fabricated sample preconcentrator exposed on a surface of the body, an apparatus for collecting air for the sensor, comprising a housing operatively arranged to mount atop the body, the housing including a multi-stage channel having an inlet and an outlet, the channel having a first stage having a first height and width proximate the inlet, a second stage having a second lower height and width proximate the micro-fabricated sample preconcentrator, a third stage having a still lower third height and width proximate the surface acoustic wave array detector, and a fourth stage having a fourth height and width proximate the outlet, where the fourth height and width are substantially the same as the first height and width.

System Access | High-Performance Computing | NREL

Science.gov Websites

) systems. Photo of man looking at a large computer monitor with a colorful, visual display of data. System secure shell gateway (SSH) or virtual private network (VPN). User Accounts Request a user account

Four-dimensional variational Ocean ReAnalysis for the Western North Pacific over 30 years (FORA-WNP30)

NASA Astrophysics Data System (ADS)

Hirose, N.; Takatsuki, Y.; Usui, N.; Wakamatsu, T.; Tanaka, Y.; Toyoda, T.; Nishikawa, S.; Fujii, Y.; Igarashi, H.; Nishikawa, H.; Ishikawa, Y.; Kuragano, T.; Kamachi, M.

2016-12-01

An ocean reanalysis, FORA-WNP30, was produced by the collaborative work of Meteorological Research Institute, Japan Meteorological Agency (JMA/MRI) and Japan Agency for Marine-Earth Science and Technology (JAMSTEC). A state-of-the-art 4-dimensional variational ocean data assimilation system, MOVE-4DVAR (Usui et al., 2015) was used. The calculation for the reanalysis, with the horizontal resolution of 0.1 degree (about 10 km) and the period between 1 January 1982 and 31 December 2014, was carried out on the Earth Simulator with the support of JAMSTEC. The model forcing is derived from the JRA-55 atmospheric reanalysis product. In-situ temperature and salinity profiles above 1500m-depth, satellite-based sea surface temperature (SST) and sea surface height (SSH) data are assimilated in FORA-WNP30.Using the current observations obtained by the Acoustic Doppler Current Profiler (ADCP) installed in two JMA research vessels, we validate the current (velocity) field in FORA-WNP30 and MOVE-3DVAR system, the latter of which is an operational ocean data assimilation system in JMA. The ADCP current data are independent because they are not assimilated in both systems. The current fields at 100-m depth during 2001-2012, in both of FORA-WNP30 and MOVE-3DVAR show high correlation with ADCP observation in the south of Japan, the East China Sea and the Kuroshio extension region, and relatively low correlation in the Japan Sea and the Oyashio region. The correlation coefficients of current speed for FORA-WNP30 are higher than those for MOVE-3DVAR in all regions.FORA-WNP30 successfully reproduces not only the major ocean current such as the Kuroshio and Oyashio, but also the associated meso-scale phenomena such as eddies, fronts, and meanders. In addition, it replicates the Kuroshio large meander events and the strong intrusion event of the Oyashio in 1980s, in spite of no satellite altimeter data for this period. Therefore, FORA-WNP30 is a valuable dataset for use in a variety of oceanographic process study and related fields such as climate study, meteorology, and fisheries.

Web-based Altimeter Service

NASA Astrophysics Data System (ADS)

Callahan, P. S.; Wilson, B. D.; Xing, Z.; Raskin, R. G.

2010-12-01

We have developed a web-based system to allow updating and subsetting of TOPEX data. The Altimeter Service will be operated by PODAAC along with their other provision of oceanographic data. The Service could be easily expanded to other mission data. An Altimeter Service is crucial to the improvement and expanded use of altimeter data. A service is necessary for altimetry because the result of most interest - sea surface height anomaly (SSHA) - is composed of several components that are updated individually and irregularly by specialized experts. This makes it difficult for projects to provide the most up-to-date products. Some components are the subject of ongoing research, so the ability for investigators to make products for comparison or sharing is important. The service will allow investigators/producers to get their component models or processing into widespread use much more quickly. For coastal altimetry, the ability to subset the data to the area of interest and insert specialized models (e.g., tides) or data processing results is crucial. A key part of the Altimeter Service is having data producers provide updated or local models and data. In order for this to succeed, producers need to register their products with the Altimeter Service and to provide the product in a form consistent with the service update methods. We will describe the capabilities of the web service and the methods for providing new components. Currently the Service is providing TOPEX GDRs with Retracking (RGDRs) in netCDF format that has been coordinated with Jason data. Users can add new orbits, tide models, gridded geophysical fields such as mean sea surface, and along-track corrections as they become available and are installed by PODAAC. The updated fields are inserted into the netCDF files while the previous values are retained for comparison. The Service will also generate SSH and SSHA. In addition, the Service showcases a feature that plots any variable from files in netCDF. The research described here was carried out at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with the National Aeronautics and Space Administration.

Verification, Validation and Accreditation using AADL

DTIC Science & Technology

2011-05-03

component h component, c r2 socsr hhh  max. height (surface relative), hsr r1 pwbsra thh  max. height (absolute), ha pwb pwb t c0. Context-Specific...5512 digital oscillatorABC_9230 Warning Module PWB component component, c r2 hhh max. height (surface relative), hsr r1 pwbsra thh  max. height

Leisure Time of Husbands and Wives.

ERIC Educational Resources Information Center

Nickols, Sharon Y.; Abdel-Ghany, Mohamed

1983-01-01

The results of this analysis of leisure time of husband and wife indicate the importance of family roles and relationships in the allocation of time to leisure. Previous examinations have seldom considered leisure time in a family context. (SSH)

The Causes and Costs of Promotion Trauma.

ERIC Educational Resources Information Center

Darling, Lu Ann W.; McGrath, Loraine G.

1983-01-01

Minimizing the stress that nurses experience after a promotion requires an understanding of the factors associated with moving up the managerial ladder. Knowing these factors, nursing administrators can plan their programs to support their managers in transition. (SSH)

Perceptions of the Value of Extended Service in Horticulture.

ERIC Educational Resources Information Center

Watkins, Larae; Miller, Larry E.

1983-01-01

This study suggests the need for several improvements in the summer vocational horticulture education programs. Knowledge of the summer program, its aims, and the teacher's responsibilities appears to be lacking in the groups studied. (SSH)

GPCR-mediated PLCβγ/PKCβ/PKD signaling pathway regulates the cofilin phosphatase slingshot 2 in neutrophil chemotaxis

PubMed Central

Xu, Xuehua; Gera, Nidhi; Li, Hongyan; Yun, Michelle; Zhang, Liyong; Wang, Youhong; Wang, Q. Jane; Jin, Tian

2015-01-01

Chemotaxis requires precisely coordinated polymerization and depolymerization of the actin cytoskeleton at leading fronts of migrating cells. However, GPCR activation-controlled F-actin depolymerization remains largely elusive. Here, we reveal a novel signaling pathway, including Gαi, PLC, PKCβ, protein kinase D (PKD), and SSH2, in control of cofilin phosphorylation and actin cytoskeletal reorganization, which is essential for neutrophil chemotaxis. We show that PKD is essential for neutrophil chemotaxis and that GPCR-mediated PKD activation depends on PLC/PKC signaling. More importantly, we discover that GPCR activation recruits/activates PLCγ2 in a PI3K-dependent manner. We further verify that PKCβ specifically interacts with PKD1 and is required for chemotaxis. Finally, we identify slingshot 2 (SSH2), a phosphatase of cofilin (actin depolymerization factor), as a target of PKD1 that regulates cofilin phosphorylation and remodeling of the actin cytoskeleton during neutrophil chemotaxis. PMID:25568344

Mitogenome Diversity in Sardinians: A Genetic Window onto an Island's Past

PubMed Central

Olivieri, Anna; Sidore, Carlo; Achilli, Alessandro; Angius, Andrea; Posth, Cosimo; Furtwängler, Anja; Brandini, Stefania; Capodiferro, Marco Rosario; Gandini, Francesca; Zoledziewska, Magdalena; Pitzalis, Maristella; Maschio, Andrea; Busonero, Fabio; Lai, Luca; Skeates, Robin; Gradoli, Maria Giuseppina; Beckett, Jessica; Marongiu, Michele; Mazzarello, Vittorio; Marongiu, Patrizia; Rubino, Salvatore; Rito, Teresa; Macaulay, Vincent; Semino, Ornella; Pala, Maria; Abecasis, Gonçalo R.; Schlessinger, David; Conde-Sousa, Eduardo; Soares, Pedro; Richards, Martin B.

2017-01-01

Sardinians are “outliers” in the European genetic landscape and, according to paleogenomic nuclear data, the closest to early European Neolithic farmers. To learn more about their genetic ancestry, we analyzed 3,491 modern and 21 ancient mitogenomes from Sardinia. We observed that 78.4% of modern mitogenomes cluster into 89 haplogroups that most likely arose in situ. For each Sardinian-specific haplogroup (SSH), we also identified the upstream node in the phylogeny, from which non-Sardinian mitogenomes radiate. This provided minimum and maximum time estimates for the presence of each SSH on the island. In agreement with demographic evidence, almost all SSHs coalesce in the post-Nuragic, Nuragic and Neolithic-Copper Age periods. For some rare SSHs, however, we could not dismiss the possibility that they might have been on the island prior to the Neolithic, a scenario that would be in agreement with archeological evidence of a Mesolithic occupation of Sardinia. PMID:28177087

Thrombospondin Type-1 Repeat Domain-Containing Proteins Are Strongly Expressed in the Head Region of Hydra.

PubMed

Hamaguchi-Hamada, Kayoko; Kurumata-Shigeto, Mami; Minobe, Sumiko; Fukuoka, Nozomi; Sato, Manami; Matsufuji, Miyuki; Koizumi, Osamu; Hamada, Shun

2016-01-01

The head region of Hydra, the hypostome, is a key body part for developmental control and the nervous system. We herein examined genes specifically expressed in the head region of Hydra oligactis using suppression subtractive hybridization (SSH) cloning. A total of 1414 subtracted clones were sequenced and found to be derived from at least 540 different genes by BLASTN analyses. Approximately 25% of the subtracted clones had sequences encoding thrombospondin type-1 repeat (TSR) domains, and were derived from 17 genes. We identified 11 TSR domain-containing genes among the top 36 genes that were the most frequently detected in our SSH library. Whole-mount in situ hybridization analyses confirmed that at least 13 out of 17 TSR domain-containing genes were expressed in the hypostome of Hydra oligactis. The prominent expression of TSR domain-containing genes suggests that these genes play significant roles in the hypostome of Hydra oligactis.

Identification and verification of differentially expressed genes in the caprine hypothalamic-pituitary-gonadal axis that are associated with litter size.

PubMed

Feng, Tao; Cao, Gui-Ling; Chu, Ming-Xing; Di, Ran; Huang, Dong-Wei; Liu, Qiu-Yue; Pan, Zhang-Yuan; Jin, Mei; Zhang, Ying-Jie; Li, Ning

2015-02-01

Litter size is a favorable economic trait for the goat industry, but remains a complex trait controlled by multiple genes in multiple organs. Several genes have been identified that may affect embryo survival, follicular development, and the health of fetuses during pregnancy. Jining Grey goats demonstrate the largest litter size among goat breeds indigenous to China. In order to better understand the genetic basis of this trait, six suppression subtractive hybridization (SSH) cDNA libraries were constructed using pooled mRNAs from hypothalamuses, pituitaries, and ovaries of sexually mature and adult polytocous Jining Grey goats, as testers, versus the pooled corresponding mRNAs of monotocous Liaoning Cashmere goats, as drivers. A total of 1,458 true-positive clones--including 955 known genes and 481 known and 22 unknown expressed sequence tags--were obtained from the SSH libraries by sequencing and alignment. The known genes were categorized into cellular processes and signaling information storage and processing, and metabolism. Three genes (FTH1, GH, and SAA) were selected to validate the SSH results by quantitative real-time PCR; all three were up-regulated in the corresponding tissues in the tester group indicating that these are candidate genes associated with the large litter size of Jining Grey goats. Several other identified genes may affect embryo survival, follicular development, and health during pregnancy. This study provides insights into the mechanistic basis by which the caprine hypothalamic-pituitary-gonadal axis affects reproductive traits and provides a theoretical basis for goat production and breeding. © 2015 Wiley Periodicals, Inc.

Differential gene expression in whitefly Bemisia tabaci-infested tomato (Solanum lycopersicum) plants at progressing developmental stages of the insect's life cycle.

PubMed

Estrada-Hernández, María Gloria; Valenzuela-Soto, José Humberto; Ibarra-Laclette, Enrique; Délano-Frier, John Paul

2009-09-01

A suppression-subtractive-hybridization (SSH) strategy was used to identify genes whose expression was modified in response to virus-free whitefly Bemisia tabaci (Bt, biotype A) infestation in tomato (Solanum lycopersicum) plants. Thus, forward and reverse SSH gene libraries were generated at four points in the whitefly's life cycle, namely at (1) 2 days (adult feeding and oviposition: phase I); (2) 7 days (mobile crawler stage: phase II); (3) 12 days (second to third instar nymphal transition: phase III) and (4) 18 days (fourth instar nymphal stage: phase IV). The 169 genes with altered expression (up and downregulated) that were identified in the eight generated SSH libraries, together with 75 additional genes that were selected on the basis of their involvement in resistance responses against phytofagous insects and pathogens, were printed on a Nexterion(®) Slide MPX 16 to monitor their pattern of expression at the above phases. The results indicated that Bt infestation in tomato led to distinctive phase-specific expression/repression patterns of several genes associated predominantly with photosynthesis, senescence, secondary metabolism and (a)biotic stress. Most of the gene expression modifications were detected in phase III, coinciding with intense larval feeding, whereas fewer changes were detected in phases I and IV. These results complement previously reported gene expression profiles in Bt-infested tomato and Arabidopisis, and support and expand the opinion that Bt infestation leads to the downregulation of specific defense responses in addition to those controlled by jasmonic acid. Copyright © Physiologia Plantarum 2009.

TOPEX/El Niño Watch - Satellite shows Pacific Stabilizing, July 11, 1998

NASA Image and Video Library

1998-07-21

Height measurements taken by NASA U.S.-French TOPEX/Poseidon satellite. The image shows sea surface height relative to normal ocean conditions on July 11, 1998; sea surface height is an indicator of the heat content of the ocean.

Social Security.

ERIC Educational Resources Information Center

Social and Labour Bulletin, 1983

1983-01-01

This group of articles discusses a variety of studies related to social security and retirement benefits. These studies are related to both developing and developed nations and are also concerned with studying work conditions and government role in administering a democratic social security system. (SSH)

Adhesive behavior of micro/nano-textured surfaces

NASA Astrophysics Data System (ADS)

Zhang, Yuyan; Wang, Xiaoli; Li, Hanqing; Wang, Ben

2015-02-01

A numerical model of the adhesive contact between a rigid smooth sphere and an elastic textured surface based on the Lennard-Jones interatomic potential law and the Hamaker summation method is established. Textures are considered by introducing the texture height distribution into the gap equation. Simulation results show that the pull-off force on textured surfaces decreases compared to that on smooth surfaces. Furthermore, effects of sphere-shaped textures on reducing adhesion are more obvious than cylinder-shaped or cube-shaped textures when the coverage area ratio, maximum height and interval of textures are fixed. For surfaces with sphere-shaped textures, variation trends of the mean pull-off force with texture density are not monotonous, and there exists a certain range of texture densities in which the mean pull-off force is small and its variation is insignificant. In addition, the pull-off force depends also on the maximum height and radius of textures. On one hand, if the texture radius is fixed, larger maximum height results in smaller pull-off force, and if the maximum height is fixed, the pull-off force tends to increase almost linearly with increases in texture radius. On the other hand, if the height-diameter ratio of textures is fixed, the pull-off force reaches a minimum at an optimum texture radius or maximum height.

Transport variability of the Brazil Current from observations and a data assimilation model

NASA Astrophysics Data System (ADS)

Schmid, Claudia; Majumder, Sudip

2018-06-01

The Brazil Current transports from observations and the Hybrid Coordinate Model (HYCOM) model are analyzed to improve our understanding of the current's structure and variability. A time series of the observed transport is derived from a three-dimensional field of the velocity in the South Atlantic covering the years 1993 to 2015 (hereinafter called Argo & SSH). The mean transports of the Brazil Current increases from 3.8 ± 2.2 Sv (1 Sv is 106 m3 s-1) at 25° S to 13.9 ± 2.6 Sv at 32° S, which corresponds to a mean slope of 1.4 ± 0.4 Sv per degree. Transport estimates derived from HYCOM fields are somewhat higher (5.2 ± 2.7 and 18.7 ± 7.1 Sv at 25 and 32° S, respectively) than those from Argo & SSH, but these differences are small when compared with the standard deviations. Overall, the observed latitude dependence of the transport of the Brazil Current is in agreement with the wind-driven circulation in the super gyre of the subtropical South Atlantic. A mean annual cycle with highest (lowest) transports in austral summer (winter) is found to exist at selected latitudes (24, 35, and 38° S). The significance of this signal shrinks with increasing latitude (both in Argo & SSH and HYCOM), mainly due to mesoscale and interannual variability. Both Argo & SSH, as well as HYCOM, reveal interannual variability at 24 and 35° S that results in relatively large power at periods of 2 years or more in wavelet spectra. It is found that the interannual variability at 24° S is correlated with the South Atlantic Subtropical Dipole Mode (SASD), the Southern Annular Mode (SAM), and the Niño 3.4 index. Similarly, correlations between SAM and the Brazil Current transport are also found at 35° S. Further investigation of the variability reveals that the first and second mode of a coupled empirical orthogonal function of the meridional transport and the sea level pressure explain 36 and 15 % of the covariance, respectively. Overall, the results indicate that SAM, SASD, and El Niño-Southern Oscillation have an influence on the transport of the Brazil Current.

Identification and computational annotation of genes differentially expressed in pulp development of Cocos nucifera L. by suppression subtractive hybridization

PubMed Central

2014-01-01

Background Coconut (Cocos nucifera L.) is one of the world’s most versatile, economically important tropical crops. Little is known about the physiological and molecular basis of coconut pulp (endosperm) development and only a few coconut genes and gene product sequences are available in public databases. This study identified genes that were differentially expressed during development of coconut pulp and functionally annotated these identified genes using bioinformatics analysis. Results Pulp from three different coconut developmental stages was collected. Four suppression subtractive hybridization (SSH) libraries were constructed (forward and reverse libraries A and B between stages 1 and 2, and C and D between stages 2 and 3), and identified sequences were computationally annotated using Blast2GO software. A total of 1272 clones were obtained for analysis from four SSH libraries with 63% showing similarity to known proteins. Pairwise comparing of stage-specific gene ontology ids from libraries B-D, A-C, B-C and A-D showed that 32 genes were continuously upregulated and seven downregulated; 28 were transiently upregulated and 23 downregulated. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis showed that 1-acyl-sn-glycerol-3-phosphate acyltransferase (LPAAT), phospholipase D, acetyl-CoA carboxylase carboxyltransferase beta subunit, 3-hydroxyisobutyryl-CoA hydrolase-like and pyruvate dehydrogenase E1 β subunit were associated with fatty acid biosynthesis or metabolism. Triose phosphate isomerase, cellulose synthase and glucan 1,3-β-glucosidase were related to carbohydrate metabolism, and phosphoenolpyruvate carboxylase was related to both fatty acid and carbohydrate metabolism. Of 737 unigenes, 103 encoded enzymes were involved in fatty acid and carbohydrate biosynthesis and metabolism, and a number of transcription factors and other interesting genes with stage-specific expression were confirmed by real-time PCR, with validation of the SSH results as high as 66.6%. Based on determination of coconut endosperm fatty acids content by gas chromatography–mass spectrometry, a number of candidate genes in fatty acid anabolism were selected for further study. Conclusion Functional annotation of genes differentially expressed in coconut pulp development helped determine the molecular basis of coconut endosperm development. The SSH method identified genes related to fatty acids, carbohydrate and secondary metabolites. The results will be important for understanding gene functions and regulatory networks in coconut fruit. PMID:25084812

Identification and computational annotation of genes differentially expressed in pulp development of Cocos nucifera L. by suppression subtractive hybridization.

PubMed

Liang, Yuanxue; Yuan, Yijun; Liu, Tao; Mao, Wei; Zheng, Yusheng; Li, Dongdong

2014-08-02

Coconut (Cocos nucifera L.) is one of the world's most versatile, economically important tropical crops. Little is known about the physiological and molecular basis of coconut pulp (endosperm) development and only a few coconut genes and gene product sequences are available in public databases. This study identified genes that were differentially expressed during development of coconut pulp and functionally annotated these identified genes using bioinformatics analysis. Pulp from three different coconut developmental stages was collected. Four suppression subtractive hybridization (SSH) libraries were constructed (forward and reverse libraries A and B between stages 1 and 2, and C and D between stages 2 and 3), and identified sequences were computationally annotated using Blast2GO software. A total of 1272 clones were obtained for analysis from four SSH libraries with 63% showing similarity to known proteins. Pairwise comparing of stage-specific gene ontology ids from libraries B-D, A-C, B-C and A-D showed that 32 genes were continuously upregulated and seven downregulated; 28 were transiently upregulated and 23 downregulated. KEGG (Kyoto Encyclopedia of Genes and Genomes) analysis showed that 1-acyl-sn-glycerol-3-phosphate acyltransferase (LPAAT), phospholipase D, acetyl-CoA carboxylase carboxyltransferase beta subunit, 3-hydroxyisobutyryl-CoA hydrolase-like and pyruvate dehydrogenase E1 β subunit were associated with fatty acid biosynthesis or metabolism. Triose phosphate isomerase, cellulose synthase and glucan 1,3-β-glucosidase were related to carbohydrate metabolism, and phosphoenolpyruvate carboxylase was related to both fatty acid and carbohydrate metabolism. Of 737 unigenes, 103 encoded enzymes were involved in fatty acid and carbohydrate biosynthesis and metabolism, and a number of transcription factors and other interesting genes with stage-specific expression were confirmed by real-time PCR, with validation of the SSH results as high as 66.6%. Based on determination of coconut endosperm fatty acids content by gas chromatography-mass spectrometry, a number of candidate genes in fatty acid anabolism were selected for further study. Functional annotation of genes differentially expressed in coconut pulp development helped determine the molecular basis of coconut endosperm development. The SSH method identified genes related to fatty acids, carbohydrate and secondary metabolites. The results will be important for understanding gene functions and regulatory networks in coconut fruit.

An Investigation of Instantaneous Plume Rise from Rocket Exhaust

DTIC Science & Technology

1996-12-01

METERS) TOP = 2973.48 BASE= 210.62 SIGMAR (AZ) AT THE SURFACE (DEGREES) 13.5054 SIGMER(EL) AT THE SURFACE (DEGREES) 2.9738 MET. WIND WIND LAYER WIND SPEED...SELECTED LAYER HEIGHT- (METERS) TOP = 2973.48 BASE= 210.62 SIGMAR (AZ) AT THE SURFACE (DEGREES) 13.6911 SIGMER(EL) AT THE SURFACE (DEGREES) 2.9738 MET...TIME (SECS) 368.08 FIRST MIXING LAYER HEIGHT- (METERS) TOP = 210.62 BASE= 0.00 SECOND SELECTED LAYER HEIGHT- (METERS) TOP = 2973.48 BASE= 210.62 SIGMAR

Trawling bats exploit an echo-acoustic ground effect

PubMed Central

Zsebok, Sandor; Kroll, Ferdinand; Heinrich, Melina; Genzel, Daria; Siemers, Björn M.; Wiegrebe, Lutz

2013-01-01

A water surface acts not only as an optic mirror but also as an acoustic mirror. Echolocation calls emitted by bats at low heights above water are reflected away from the bat, and hence the background clutter is reduced. Moreover, targets on the surface create an enhanced echo. Here, we formally quantified the effect of the surface and target height on both target detection and -discrimination in a combined laboratory and field approach with Myotis daubentonii. In a two-alternative, forced-choice paradigm, the bats had to detect a mealworm and discriminate it from an inedible dummy (20 mm PVC disc). Psychophysical performance was measured as a function of height above either smooth surfaces (water or PVC) or above a clutter surface (artificial grass). At low heights above the clutter surface (10, 20, or 35 cm), the bats' detection performance was worse than above a smooth surface. At a height of 50 cm, the surface structure had no influence on target detection. Above the clutter surface, also target discrimination was significantly impaired with decreasing target height. A detailed analysis of the bats' echolocation calls during target approach shows that above the clutter surface, the bats produce calls with significantly higher peak frequency. Flight-path reconstruction revealed that the bats attacked an target from below over water but from above over a clutter surface. These results are consistent with the hypothesis that trawling bats exploit an echo-acoustic ground effect, in terms of a spatio-temporal integration of direct reflections with indirect reflections from the water surface, to optimize prey detection and -discrimination not only for prey on the water but also for some range above. PMID:23576990

Fashion versus perception: the impact of surface lightness on the perceived dimensions of interior space.

PubMed

Oberfeld, Daniel; Hecht, Heiko

2011-06-01

We compare expert opinion with perceptual judgment regarding the influence of color on the perceived height and width of interior rooms. We hypothesize that contrary to popular belief, ceiling and wall lightness have additive effects on perceived height, whereas the lightness contrast between these surfaces is less important. We assessed the intuitions of architectural experts as to which surface colors maximize apparent height and compared these intuitions with psychophysical height and width estimates for rooms differing in ceiling, floor, and wall lightness. Experiment 1 was a survey of architectural experts and nonexperts. Experiments 2 and 3 presented virtual rooms varying in physical height, physical width, and surface lightness. In Experiment 1, both experts and nonexperts erroneously assumed that the lightness contrast between ceiling and walls influences perceived height Experiment 2 showed that the lightness contrast does not determine apparent height but that ceiling and wall lightness have additive effects. Experiment 3 demonstrated a decrease in perceived width with physical height, whereas the perceived height was not related to physical width. Apparent width was unaffected by ceiling lightness. Light ceiling and light walls make a room appear higher, whereas floor color has a weaker effect. We also found evidence for an asymmetric interaction between height and width. The question of how to color walls and ceiling to maximize the apparent size of a room can be answered empirically. Aesthetic considerations may interfere with the correct assessment of the effects of color in experts.

Definition of Physical Height Systems for Telluric Planets and Moons

NASA Astrophysics Data System (ADS)

Tenzer, Robert; Foroughi, Ismael; Sjöberg, Lars E.; Bagherbandi, Mohammad; Hirt, Christian; Pitoňák, Martin

2018-01-01

In planetary sciences, the geodetic (geometric) heights defined with respect to the reference surface (the sphere or the ellipsoid) or with respect to the center of the planet/moon are typically used for mapping topographic surface, compilation of global topographic models, detailed mapping of potential landing sites, and other space science and engineering purposes. Nevertheless, certain applications, such as studies of gravity-driven mass movements, require the physical heights to be defined with respect to the equipotential surface. Taking the analogy with terrestrial height systems, the realization of height systems for telluric planets and moons could be done by means of defining the orthometric and geoidal heights. In this case, however, the definition of the orthometric heights in principle differs. Whereas the terrestrial geoid is described as an equipotential surface that best approximates the mean sea level, such a definition for planets/moons is irrelevant in the absence of (liquid) global oceans. A more natural choice for planets and moons is to adopt the geoidal equipotential surface that closely approximates the geometric reference surface (the sphere or the ellipsoid). In this study, we address these aspects by proposing a more accurate approach for defining the orthometric heights for telluric planets and moons from available topographic and gravity models, while adopting the average crustal density in the absence of reliable crustal density models. In particular, we discuss a proper treatment of topographic masses in the context of gravimetric geoid determination. In numerical studies, we investigate differences between the geodetic and orthometric heights, represented by the geoidal heights, on Mercury, Venus, Mars, and Moon. Our results reveal that these differences are significant. The geoidal heights on Mercury vary from - 132 to 166 m. On Venus, the geoidal heights are between - 51 and 137 m with maxima on this planet at Atla Regio and Beta Regio. The largest geoid undulations between - 747 and 1685 m were found on Mars, with the extreme positive geoidal heights under Olympus Mons in Tharsis region. Large variations in the geoidal geometry are also confirmed on the Moon, with the geoidal heights ranging from - 298 to 461 m. For comparison, the terrestrial geoid undulations are mostly within ± 100 m. We also demonstrate that a commonly used method for computing the geoidal heights that disregards the differences between the gravity field outside and inside topographic masses yields relatively large errors. According to our estimates, these errors are - 0.3/+ 3.4 m for Mercury, 0.0/+ 13.3 m for Venus, - 1.4/+ 125.6 m for Mars, and - 5.6/+ 45.2 m for the Moon.

Improving NOAA's NWLON Through Enhanced Data Inputs from NASA's Ocean Surface Topography

NASA Technical Reports Server (NTRS)

Guest, DeNeice C.

2010-01-01

This report assesses the benefit of incorporating NASA's OSTM (Ocean Surface Topography Mission) altimeter data (C- and Ku-band) into NOAA's (National Oceanic and Atmospheric Administration) NWLON (National Water Level Observation Network) DSS (Decision Support System). This data will enhance the NWLON DSS by providing additional inforrnation because not all stations collect all meteorological parameters (sea-surface height, ocean tides, wave height, and wind speed over waves). OSTM will also provide data where NWLON stations are not present. OSTM will provide data on seasurface heights for determining sea-level rise and ocean circulation. Researchers and operational users currently use satellite altimeter data products with the GSFCOO NASA data model to obtain sea-surface height and ocean circulation inforrnation. Accurate and tirnely inforrnation concerning sea-level height, tide, and ocean currents is needed to irnprove coastal tidal predictions, tsunarni and storm surge warnings, and wetland restoration.

A simple strategy to realize biomimetic surfaces with controlled anisotropic wetting

NASA Astrophysics Data System (ADS)

Wu, Dong; Chen, Qi-Dai; Yao, Jia; Guan, Yong-Chao; Wang, Jian-Nan; Niu, Li-Gang; Fang, Hong-Hua; Sun, Hong-Bo

2010-02-01

The study of anisotropic wetting has become one of the most important research areas in biomimicry. However, realization of controlled anisotropic surfaces remains challenging. Here we investigated anisotropic wetting on grooves with different linewidth, period, and height fabricated by laser interference lithography and found that the anisotropy strongly depended on the height. The anisotropy significantly increased from 9° to 48° when the height was changed from 100 nm to 1.3 μm. This was interpreted by a thermodynamic model as a consequence of the increase of free energy barriers versus the height increase. According to the relationship, controlled anisotropic surfaces were rapidly realized by adjusting the grooves' height that was simply accomplished by changing the resin thickness. Finally, the perpendicular contact angle was further enhanced to 131°±2° by surface modification, which was very close to 135°±3° of a common grass leaf.

Large-eddy simulations of surface roughness parameter sensitivity to canopy-structure characteristics

DOE PAGES

Maurer, K. D.; Bohrer, G.; Kenny, W. T.; ...

2015-04-30

Surface roughness parameters, namely the roughness length and displacement height, are an integral input used to model surface fluxes. However, most models assume these parameters to be a fixed property of plant functional type and disregard the governing structural heterogeneity and dynamics. In this study, we use large-eddy simulations to explore, in silico, the effects of canopy-structure characteristics on surface roughness parameters. We performed a virtual experiment to test the sensitivity of resolved surface roughness to four axes of canopy structure: (1) leaf area index, (2) the vertical profile of leaf density, (3) canopy height, and (4) canopy gap fraction.more » We found roughness parameters to be highly variable, but uncovered positive relationships between displacement height and maximum canopy height, aerodynamic canopy height and maximum canopy height and leaf area index, and eddy-penetration depth and gap fraction. We also found negative relationships between aerodynamic canopy height and gap fraction, as well as between eddy-penetration depth and maximum canopy height and leaf area index. We generalized our model results into a virtual "biometric" parameterization that relates roughness length and displacement height to canopy height, leaf area index, and gap fraction. Using a decade of wind and canopy-structure observations in a site in Michigan, we tested the effectiveness of our model-driven biometric parameterization approach in predicting the friction velocity over heterogeneous and disturbed canopies. We compared the accuracy of these predictions with the friction-velocity predictions obtained from the common simple approximation related to canopy height, the values calculated with large-eddy simulations of the explicit canopy structure as measured by airborne and ground-based lidar, two other parameterization approaches that utilize varying canopy-structure inputs, and the annual and decadal means of the surface roughness parameters at the site from meteorological observations. We found that the classical representation of constant roughness parameters (in space and time) as a fraction of canopy height performed relatively well. Nonetheless, of the approaches we tested, most of the empirical approaches that incorporate seasonal and interannual variation of roughness length and displacement height as a function of the dynamics of canopy structure produced more precise and less biased estimates for friction velocity than models with temporally invariable parameters.« less

Large-eddy simulations of surface roughness parameter sensitivity to canopy-structure characteristics

NASA Astrophysics Data System (ADS)

Maurer, K. D.; Bohrer, G.; Kenny, W. T.; Ivanov, V. Y.

2015-04-01

Surface roughness parameters, namely the roughness length and displacement height, are an integral input used to model surface fluxes. However, most models assume these parameters to be a fixed property of plant functional type and disregard the governing structural heterogeneity and dynamics. In this study, we use large-eddy simulations to explore, in silico, the effects of canopy-structure characteristics on surface roughness parameters. We performed a virtual experiment to test the sensitivity of resolved surface roughness to four axes of canopy structure: (1) leaf area index, (2) the vertical profile of leaf density, (3) canopy height, and (4) canopy gap fraction. We found roughness parameters to be highly variable, but uncovered positive relationships between displacement height and maximum canopy height, aerodynamic canopy height and maximum canopy height and leaf area index, and eddy-penetration depth and gap fraction. We also found negative relationships between aerodynamic canopy height and gap fraction, as well as between eddy-penetration depth and maximum canopy height and leaf area index. We generalized our model results into a virtual "biometric" parameterization that relates roughness length and displacement height to canopy height, leaf area index, and gap fraction. Using a decade of wind and canopy-structure observations in a site in Michigan, we tested the effectiveness of our model-driven biometric parameterization approach in predicting the friction velocity over heterogeneous and disturbed canopies. We compared the accuracy of these predictions with the friction-velocity predictions obtained from the common simple approximation related to canopy height, the values calculated with large-eddy simulations of the explicit canopy structure as measured by airborne and ground-based lidar, two other parameterization approaches that utilize varying canopy-structure inputs, and the annual and decadal means of the surface roughness parameters at the site from meteorological observations. We found that the classical representation of constant roughness parameters (in space and time) as a fraction of canopy height performed relatively well. Nonetheless, of the approaches we tested, most of the empirical approaches that incorporate seasonal and interannual variation of roughness length and displacement height as a function of the dynamics of canopy structure produced more precise and less biased estimates for friction velocity than models with temporally invariable parameters.

Robotics: A New Challenge For Industrial Arts.

ERIC Educational Resources Information Center

Lovedahl, Gerald G.

1983-01-01

The author argues that jobs in the future will depend less on manual skill and more on perceptual aptitude, formal knowledge, and precision. Industrial arts classes must include robotics in their curriculum if they intend to reflect accurately American industry. (Author/SSH)

An atlas of monthly mean distributions of GEOSAT sea surface height, SSMI surface wind speed, AVHRR/2 sea surface temperature, and ECMWF surface wind components during 1988

NASA Technical Reports Server (NTRS)

Halpern, D.; Zlotnicki, V.; Newman, J.; Brown, O.; Wentz, F.

1991-01-01

Monthly mean global distributions for 1988 are presented with a common color scale and geographical map. Distributions are included for sea surface height variation estimated from GEOSAT; surface wind speed estimated from the Special Sensor Microwave Imager on the Defense Meteorological Satellite Program spacecraft; sea surface temperature estimated from the Advanced Very High Resolution Radiometer on NOAA spacecrafts; and the Cartesian components of the 10m height wind vector computed by the European Center for Medium Range Weather Forecasting. Charts of monthly mean value, sampling distribution, and standard deviation value are displayed. Annual mean distributions are displayed.

Worksheets for computing recommended notebook computer and workstation adjustments.

PubMed

Nanthavanij, Suebsak; Udomratana, Chatkate; Hansawad, Saowalak; Thepkanjana, Jayaporn; Tantasuwan, Wanchalerm

2013-01-01

This paper discusses the design and development of worksheets for helping notebook computer (NBC) users to compute NBC and workstation adjustments so as to assume an appropriate seated posture. The worksheets (one for male users, the other for female ones) require the following information: body height, NBC screen size, work surface height, and seat height. The worksheets contain tables for estimating recommended NBC base angle, NBC screen angle, body-NBC distance, work surface height, and seat height. Additionally, they include flow charts to help NBC users to determine necessary adjustment accessories and their settings.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Maurer, K. D.; Bohrer, G.; Kenny, W. T.

Surface roughness parameters, namely the roughness length and displacement height, are an integral input used to model surface fluxes. However, most models assume these parameters to be a fixed property of plant functional type and disregard the governing structural heterogeneity and dynamics. In this study, we use large-eddy simulations to explore, in silico, the effects of canopy-structure characteristics on surface roughness parameters. We performed a virtual experiment to test the sensitivity of resolved surface roughness to four axes of canopy structure: (1) leaf area index, (2) the vertical profile of leaf density, (3) canopy height, and (4) canopy gap fraction.more » We found roughness parameters to be highly variable, but uncovered positive relationships between displacement height and maximum canopy height, aerodynamic canopy height and maximum canopy height and leaf area index, and eddy-penetration depth and gap fraction. We also found negative relationships between aerodynamic canopy height and gap fraction, as well as between eddy-penetration depth and maximum canopy height and leaf area index. We generalized our model results into a virtual "biometric" parameterization that relates roughness length and displacement height to canopy height, leaf area index, and gap fraction. Using a decade of wind and canopy-structure observations in a site in Michigan, we tested the effectiveness of our model-driven biometric parameterization approach in predicting the friction velocity over heterogeneous and disturbed canopies. We compared the accuracy of these predictions with the friction-velocity predictions obtained from the common simple approximation related to canopy height, the values calculated with large-eddy simulations of the explicit canopy structure as measured by airborne and ground-based lidar, two other parameterization approaches that utilize varying canopy-structure inputs, and the annual and decadal means of the surface roughness parameters at the site from meteorological observations. We found that the classical representation of constant roughness parameters (in space and time) as a fraction of canopy height performed relatively well. Nonetheless, of the approaches we tested, most of the empirical approaches that incorporate seasonal and interannual variation of roughness length and displacement height as a function of the dynamics of canopy structure produced more precise and less biased estimates for friction velocity than models with temporally invariable parameters.« less

Monthly Maps of Sea Surface Height in the North Atlantic and Zonal Indices for the Gulf Stream Using TOPEX/Poseidon Altimeter Data

NASA Technical Reports Server (NTRS)

Singh, Sandipa; Kelly, Kathryn A.

1997-01-01

Monthly Maps of sea surface height are constructed for the North Atlantic Ocean using TOPEX/Poseidon altimeter data. Mean sea surface height is reconstructed using a weighted combination of historical, hydrographic data and a synthetic mean obtained by fitting a Gaussian model of the Gulf Stream jet to altimeter data. The resultant mean shows increased resolution over the hydrographic mean, and incorporates recirculation information that is absent in the synthetic mean. Monthly maps, obtained by adding the mean field to altimeter sea surface height residuals, are used to derive a set of zonal indices that describe the annual cycle of meandering as well as position and strength of the Gulf Stream.

Use of reflected GNSS SNR data to retrieve either soil moisture or vegetation height from a wheat crop

NASA Astrophysics Data System (ADS)

Zhang, Sibo; Roussel, Nicolas; Boniface, Karen; Ha, Minh Cuong; Frappart, Frédéric; Darrozes, José; Baup, Frédéric; Calvet, Jean-Christophe

2017-09-01

This work aims to estimate soil moisture and vegetation height from Global Navigation Satellite System (GNSS) Signal to Noise Ratio (SNR) data using direct and reflected signals by the land surface surrounding a ground-based antenna. Observations are collected from a rainfed wheat field in southwestern France. Surface soil moisture is retrieved based on SNR phases estimated by the Least Square Estimation method, assuming the relative antenna height is constant. It is found that vegetation growth breaks up the constant relative antenna height assumption. A vegetation-height retrieval algorithm is proposed using the SNR-dominant period (the peak period in the average power spectrum derived from a wavelet analysis of SNR). Soil moisture and vegetation height are retrieved at different time periods (before and after vegetation's significant growth in March). The retrievals are compared with two independent reference data sets: in situ observations of soil moisture and vegetation height, and numerical simulations of soil moisture, vegetation height and above-ground dry biomass from the ISBA (interactions between soil, biosphere and atmosphere) land surface model. Results show that changes in soil moisture mainly affect the multipath phase of the SNR data (assuming the relative antenna height is constant) with little change in the dominant period of the SNR data, whereas changes in vegetation height are more likely to modulate the SNR-dominant period. Surface volumetric soil moisture can be estimated (R2 = 0.74, RMSE = 0.009 m3 m-3) when the wheat is smaller than one wavelength (˜ 19 cm). The quality of the estimates markedly decreases when the vegetation height increases. This is because the reflected GNSS signal is less affected by the soil. When vegetation replaces soil as the dominant reflecting surface, a wavelet analysis provides an accurate estimation of the wheat crop height (R2 = 0.98, RMSE = 6.2 cm). The latter correlates with modeled above-ground dry biomass of the wheat from stem elongation to ripening. It is found that the vegetation height retrievals are sensitive to changes in plant height of at least one wavelength. A simple smoothing of the retrieved plant height allows an excellent matching to in situ observations, and to modeled above-ground dry biomass.

Biomechanical evaluation of injury severity associated with patient falls from bed.

PubMed

Bowers, Bonnie; Lloyd, John; Lee, W; Powell-Cope, G; Baptiste, A

2008-01-01

This study investigated the severity of injuries associated with falling from bed and the effectiveness of injury-prevention strategies. Injury criteria were calculated for head- and feet-first falls from six bed heights onto a tiled surface and floor mat. These values indicated a 25% chance of experiencing a serious head injury as a result of falling feet-first from a bed height of 97.5 cm onto a tiled surface. Risk of injury increased to 40% when extrapolated for the height added by bedrails. Using a floor mat decreased this risk to less than 1% for bedrail height for feet-first falls. Calculated impact forces indicated a risk of skull fracture when hitting the tiled surface. Floor mats and height-adjustable beds positioned to the lowest height should be used to decrease the risk of injury associated with falling from bed.

Personal Equipment and Clothing Correction Factors for the Australian Army: A Pilot Survey

DTIC Science & Technology

2014-11-01

Sitting M24 Fit Thigh Clearance M12 Clearance and Fit, DHM Knee Height, Sitting M13 Fit, DHM Popliteal Height M14 Fit, DHM Buttock-Knee Length...Measure Semi-Nude Definition Encumbered Definition EM28 Knee Height, Sitting Footrest surface to Suprapatella ( M13 ). Footrest surface to

Synthetic temperature profiles derived from Geosat altimetry: Comparison with air-dropped expendable bathythermograph profiles

NASA Astrophysics Data System (ADS)

Carnes, Michael R.; Mitchell, Jim L.; de Witt, P. Webb

1990-10-01

Synthetic temperature profiles are computed from altimeter-derived sea surface heights in the Gulf Stream region. The required relationships between surface height (dynamic height at the surface relative to 1000 dbar) and subsurface temperature are provided from regression relationships between dynamic height and amplitudes of empirical orthogonal functions (EOFs) of the vertical structure of temperature derived by de Witt (1987). Relationships were derived for each month of the year from historical temperature and salinity profiles from the region surrounding the Gulf Stream northeast of Cape Hatteras. Sea surface heights are derived using two different geoid estimates, the feature-modeled geoid and the air-dropped expendable bathythermograph (AXBT) geoid, both described by Carnes et al. (1990). The accuracy of the synthetic profiles is assessed by comparison to 21 AXBT profile sections which were taken during three surveys along 12 Geosat ERM ground tracks nearly contemporaneously with Geosat overflights. The primary error statistic considered is the root-mean-square (rms) difference between AXBT and synthetic isotherm depths. The two sources of error are the EOF relationship and the altimeter-derived surface heights. EOF-related and surface height-related errors in synthetic temperature isotherm depth are of comparable magnitude; each translates into about a 60-m rms isotherm depth error, or a combined 80 m to 90 m error for isotherms in the permanent thermocline. EOF-related errors are responsible for the absence of the near-surface warm core of the Gulf Stream and for the reduced volume of Eighteen Degree Water in the upper few hundred meters of (apparently older) cold-core rings in the synthetic profiles. The overall rms difference between surface heights derived from the altimeter and those computed from AXBT profiles is 0.15 dyn m when the feature-modeled geoid is used and 0.19 dyn m when the AXBT geoid is used; the portion attributable to altimeter-derived surface height errors alone is 0.03 dyn m less for each. In most cases, the deeper structure of the Gulf Stream and eddies is reproduced well by vertical sections of synthetic temperature, with largest errors typically in regions of high horizontal gradient such as across rings and the Gulf Stream front.

RanBP9 at the intersection between cofilin and Aβ pathologies: rescue of neurodegenerative changes by RanBP9 reduction.

PubMed

Woo, J A; Boggess, T; Uhlar, C; Wang, X; Khan, H; Cappos, G; Joly-Amado, A; De Narvaez, E; Majid, S; Minamide, L S; Bamburg, J R; Morgan, D; Weeber, E; Kang, D E

2015-03-05

Molecular pathways underlying the neurotoxicity and production of amyloid β protein (Aβ) represent potentially promising therapeutic targets for Alzheimer's disease (AD). We recently found that overexpression of the scaffolding protein RanBP9 increases Aβ production in cell lines and in transgenic mice while promoting cofilin activation and mitochondrial dysfunction. Translocation of cofilin to mitochondria and induction of cofilin-actin pathology require the activation/dephosphorylation of cofilin by Slingshot homolog 1 (SSH1) and cysteine oxidation of cofilin. In this study, we found that endogenous RanBP9 positively regulates SSH1 levels and mediates Aβ-induced translocation of cofilin to mitochondria and induction of cofilin-actin pathology in cultured cells, primary neurons, and in vivo. Endogenous level of RanBP9 was also required for Aβ-induced collapse of growth cones in immature neurons (days in vitro 9 (DIV9)) and depletion of synaptic proteins in mature neurons (DIV21). In vivo, amyloid precursor protein (APP)/presenilin-1 (PS1) mice exhibited 3.5-fold increased RanBP9 levels, and RanBP9 reduction protected against cofilin-actin pathology, synaptic damage, gliosis, and Aβ accumulation associated with APP/PS1 mice. Brains slices derived from APP/PS1 mice showed significantly impaired long-term potentiation (LTP), and RanBP9 reduction significantly enhanced paired pulse facilitation and LTP, as well as partially rescued contextual memory deficits associated with APP/PS1 mice. Therefore, these results underscore the critical importance of endogenous RanBP9 not only in Aβ accumulation but also in mediating the neurotoxic actions of Aβ at the level of synaptic plasticity, mitochondria, and cofilin-actin pathology via control of the SSH1-cofilin pathway in vivo.

Identification of transcripts involved in meiosis and follicle formation during ovine ovary development.

PubMed

Baillet, Adrienne; Mandon-Pépin, Béatrice; Cabau, Cédric; Poumerol, Elodie; Pailhoux, Eric; Cotinot, Corinne

2008-09-23

The key steps in germ cell survival during ovarian development are the entry into meiosis of oogonies and the formation of primordial follicles, which then determine the reproductive lifespan of the ovary. In sheep, these steps occur during fetal life, between 55 and 80 days of gestation, respectively. The aim of this study was to identify differentially expressed ovarian genes during prophase I meiosis and early folliculogenesis in sheep. In order to elucidate the molecular events associated with early ovarian differentiation, we generated two ovary stage-specific subtracted cDNA libraries using SSH. Large-scale sequencing of these SSH libraries identified 6,080 ESTs representing 2,535 contigs. Clustering and assembly of these ESTs resulted in a total of 2,101 unique sequences depicted in 1,305 singleton (62.11%) and 796 contigs (37.9%) ESTs (clusters). BLASTX evaluation indicated that 99% of the ESTs were homologous to various known genes/proteins in a broad range of organisms, especially ovine, bovine and human species. The remaining 1% which exhibited any homology to known gene sequences was considered as novel. Detailed study of the expression patterns of some of these genes using RT-PCR revealed new promising candidates for ovary differentiation genes in sheep. We showed that the SSH approach was relevant to determining new mammalian genes which might be involved in oogenesis and early follicle development, and enabled the discovery of new potential oocyte and granulosa cell markers for future studies. These genes may have significant implications regarding our understanding of ovarian function in molecular terms, and for the development of innovative strategies to both promote and control fertility.

Altered regulation of renal sodium transporters in salt-sensitive hypertensive rats induced by uninephrectomy.

PubMed

Jung, Ji Yong; Lee, Jay Wook; Kim, Sejoong; Jung, Eun Sook; Jang, Hye Ryoun; Han, Jin Suk; Joo, Kwon Wook

2009-12-01

Uninephrectomy (uNx) in young rats causes salt-sensitive hypertension (SSH). Alterations of sodium handling in residual nephrons may play a role in the pathogenesis. Therefore, we evaluated the adaptive alterations of renal sodium transporters according to salt intake in uNx-SSH rats. uNx or sham operations were performed in male Sprague-Dawley rats, and normal-salt diet was fed for 4 weeks. Four experimental groups were used: sham-operated rats raised on a high-salt diet for 2 weeks (CHH) or on a low-salt diet for 1 week after 1 week's high-salt diet (CHL) and uNx rats fed on the same diet (NHH, NHL) as the sham-operated rats were fed. Expression of major renal sodium transporters were determined by semiquantitative immunoblotting. Systolic blood pressure was increased in NHH and NHL groups, compared with CHH and CHL, respectively. Protein abundances of Na(+)/K(+)/2Cl(-) cotransporter (NKCC2) and Na(+)/Cl(-) cotransporter (NCC) in the CHH group were lower than the CHL group. Expression of epithelial sodium channel (ENaC)-γ increased in the CHH group. In contrast, expressions of NKCC2 and NCC in the NHH group didn't show any significant alterations, compared to the NHL group. Expressions of ENaC-α and ENaC-β in the NHH group were higher than the CHH group. Adaptive alterations of NKCC2 and NCC to changes of salt intake were different in the uNx group, and changes in ENaC-α and ENaC-β were also different. These altered regulations of sodium transporters may be involved in the pathogenesis of SSH in the uNx rat model.

Understanding controls of hydrologic processes across two monolithological catchments using model-data integration

NASA Astrophysics Data System (ADS)

Xiao, D.; Shi, Y.; Li, L.

2016-12-01

Field measurements are important to understand the fluxes of water, energy, sediment, and solute in the Critical Zone however are expensive in time, money, and labor. This study aims to assess the model predictability of hydrological processes in a watershed using information from another intensively-measured watershed. We compare two watersheds of different lithology using national datasets, field measurements, and physics-based model, Flux-PIHM. We focus on two monolithological, forested watersheds under the same climate in the Shale Hills Susquehanna CZO in central Pennsylvania: the Shale-based Shale Hills (SSH, 0.08 km2) and the sandstone-based Garner Run (GR, 1.34 km2). We firstly tested the transferability of calibration coefficients from SSH to GR. We found that without any calibration the model can successfully predict seasonal average soil moisture and discharge which shows the advantage of a physics-based model, however, cannot precisely capture some peaks or the runoff in summer. The model reproduces the GR field data better after calibrating the soil hydrology parameters. In particular, the percentage of sand turns out to be a critical parameter in reproducing data. With sandstone being the dominant lithology, GR has much higher sand percentage than SSH (48.02% vs. 29.01%), leading to higher hydraulic conductivity, lower overall water storage capacity, and in general lower soil moisture. This is consistent with area averaged soil moisture observations using the cosmic-ray soil moisture observing system (COSMOS) at the two sites. This work indicates that some parameters, including evapotranspiration parameters, are transferrable due to similar climatic and land cover conditions. However, the key parameters that control soil moisture, including the sand percentage, need to be recalibrated, reflecting the key role of soil hydrological properties.

Adsorption heights and bonding strength of organic molecules on a Pb-Ag surface alloy

NASA Astrophysics Data System (ADS)

Stadtmüller, Benjamin; Haag, Norman; Seidel, Johannes; van Straaten, Gerben; Franke, Markus; Kumpf, Christian; Cinchetti, Mirko; Aeschlimann, Martin

2016-12-01

The understanding of the fundamental geometric and electronic properties of metal-organic hybrid interfaces is a key issue on the way to improving the performance of organic electronic and spintronic devices. Here, we studied the adsorption heights of copper-II-phthalocyanine (CuPc) and 3,4,9,10-perylene-tetracarboxylic-dianhydride (PTCDA) on a Pb1Ag2 surface alloy on Ag(111) using the normal-incidence x-ray standing waves technique. We find a significantly larger adsorption height of both molecules on the Pb-Ag surface alloy compared to the bare Ag(111) surface which is caused by the larger size of Pb. This increased adsorption height suppresses the partial chemical interaction of both molecules with Ag surface atoms. Instead, CuPc and PTCDA molecules bond only to the Pb atoms with different interaction strength ranging from a van der Waals-like interaction for CuPc to a weak chemical interaction with additional local bonds for PTCDA. The different adsorption heights for CuPc and PTCDA on Pb1Ag2 are the result of local site-specific molecule-surface bonds mediated by functional molecular groups and the different charge donating and accepting character of CuPc and PTCDA.

Fully reprocessed ERS-1 altimeter data from 1992 to 1995: Feasibility of the detection of long term sea level change

NASA Astrophysics Data System (ADS)

Anzenhofer, M.; Gruber, T.

1998-04-01

Global mean sea level observations are necessary to answer the urgent questions about climate changes and their impact on socio-economy. At GeoForschungsZentrum/Geman Processing and Archiving Facility ERS altimeter data is used to systematically generate geophysical products such as sea surface topography, high-resolution geoid and short- and long-period sea surface height models. On the basis of this experience, fully reprocessed ERS-1 altimeter data is used to generated a time series of monthly sea surface height models from April 1992 to April 1995. The reprocessing consists of improved satellite ephemerides, merging of Grenoble tidal model, and application of range corrections due to timing errors. With the new data set the TOPEX/POSEIDON prelaunch accuracy requirements are fulfilled. The 3-year time series is taken to estimate the rate of change of global mean sea level. A careful treatment of seasonal effects is considered. A masking of continents, sea ice, and suspect sea surface heights is chosen that is common for all sea surface height models. The obtained rate of change is compared to external results from tide gauge records and TOPEX/POSEIDON data. The relation of sea level changes and sea surface temperature variations is examined by means of global monthly sea surface temperature maps. Both global wind speed and wave height maps are investigated and correlated with sea surface heights and sea surface temperatures in order to find other indicators of climate variations. The obtained rate of changes of the various global maps is compared to an atmospheric CO2 anomaly record, which is highly correlated to El Niño events. The relatively short period of 3 years, however, does not allow definite conclusions with respect to possible long-term climate changes.

Results on SSH neural network forecasting in the Mediterranean Sea

NASA Astrophysics Data System (ADS)

Rixen, Michel; Beckers, Jean-Marie; Alvarez, Alberto; Tintore, Joaquim

2002-01-01

Nowadays, satellites are the only monitoring systems that cover almost continuously all possible ocean areas and are now an essential part of operational oceanography. A novel approach based on artificial intelligence (AI) concepts, exploits pasts time series of satellite images to infer near future ocean conditions at the surface by neural networks and genetic algorithms. The size of the AI problem is drastically reduced by splitting the spatio-temporal variability contained in the remote sensing data by using empirical orthogonal function (EOF) decomposition. The problem of forecasting the dynamics of a 2D surface field can thus be reduced by selecting the most relevant empirical modes, and non-linear time series predictors are then applied on the amplitudes only. In the present case study, we use altimetric maps of the Mediterranean Sea, combining TOPEX-POSEIDON and ERS-1/2 data for the period 1992 to 1997. The learning procedure is applied to each mode individually. The final forecast is then reconstructed form the EOFs and the forecasted amplitudes and compared to the real observed field for validation of the method.

Influence of hydrophobic and superhydrophobic surfaces on reducing aerodynamic insect residues

NASA Astrophysics Data System (ADS)

Krishnan, K. Ghokulla; Milionis, Athanasios; Loth, Eric; Farrell, Thomas E.; Crouch, Jeffrey D.; Berry, Douglas H.

2017-01-01

Insect fouling during takeoff, climb and landing can result in increased drag and fuel consumption for aircrafts with laminar-flow surfaces. This study investigates the effectiveness of various hydrophobic and superhydrophobic surfaces in reducing residue of insects on an aerodynamic surface at relatively high impact speeds (about 45 m/s). An experimental setup consisting of a wind tunnel and a method to inject live flightless fruit flies was used to test the effectiveness of various surfaces against insect fouling. Insect fouling was analyzed based on residue area and height from multiple impacts. In general most of the residue area was due to the hemolymph spreading while most of the residue height was due to adhesion of exoskeleton parts. Hydrophobic and especially superhydrophobic surfaces performed better than a hydrophilic aluminum surface in terms of minimizing the residue area of various insect components (exoskeleton, hemolymph, and red fluid). Surfaces with reduced wettability and short lateral length scales tended to have the smallest residue area. Residue height was not as strongly influenced by surface wettability since even a single exoskeleton adhered to the surface upon impact was enough to produce a residue height of the order of one mm. In general, the results indicate that hemolymph spread needs to be avoided (e.g. by having reduced wettability and short lateral correlation lengths) in order to minimize the residue area, while exoskeleton adherence needs to be avoided (e.g. by having oleophobic properties and micro/nano roughness) in order to minimize the residue height. In particular, two of the superhydrophobic coatings produced substantial reduction in residue height and area, relative to the baseline surface of aluminum. However, the surfaces also showed poor mechanical durability on the high-speed insect impact location. This suggests that although low wettability materials show great insect anti-fouling behavior, their durability needs to be substantially improved in order to withstand harsh aerospace conditions.

Combined Studies

DTIC Science & Technology

1976-08-31

SSH, (1-1) where H viands for conjugate transpose, and S is the total signal vector recorded at an array of sensors, defined by: S...time delay, and a = a scale constant (for convenience, yet without loss of gen- erality, les us assume (|a(<l) ), The complex cepstrum x(n

XENOBIOTIC INDUCED ORGAN-SPECIFIC GENE EXPRESSION AND MACRO/MICROARRAY DEVELOPMENT IN MEDAKA (ORYZIAS LATIPES)

EPA Science Inventory

As part of an ongoing effort to understand and address the short and long-term consequences of increasing levels of environmental contaminants, we used suppressive subtractive hydridization (SSH) to develop gene expression profiles from Japanese medaka (Oryzias latipes) exposed ...

Suppression subtractive hybridization as a tool to identify anthocyanin metabolism-related genes in apple skin.

PubMed

Ban, Yusuke; Moriguchi, Takaya

2010-01-01

The pigmentation of anthocyanins is one of the important determinants for consumer preference and marketability in horticultural crops such as fruits and flowers. To elucidate the mechanisms underlying the physiological process leading to the pigmentation of anthocyanins, identification of the genes differentially expressed in response to anthocyanin accumulation is a useful strategy. Currently, microarrays have been widely used to isolate differentially expressed genes. However, the use of microarrays is limited by its high cost of special apparatus and materials. Therefore, availability of microarrays is limited and does not come into common use at present. Suppression subtractive hybridization (SSH) is an alternative tool that has been widely used to identify differentially expressed genes due to its easy handling and relatively low cost. This chapter describes the procedures for SSH, including RNA extraction from polysaccharides and polyphenol-rich samples, poly(A)+ RNA purification, evaluation of subtraction efficiency, and differential screening using reverse northern in apple skin.

Thrombospondin Type-1 Repeat Domain-Containing Proteins Are Strongly Expressed in the Head Region of Hydra

PubMed Central

Hamaguchi-Hamada, Kayoko; Kurumata-Shigeto, Mami; Minobe, Sumiko; Fukuoka, Nozomi; Sato, Manami; Matsufuji, Miyuki; Koizumi, Osamu; Hamada, Shun

2016-01-01

The head region of Hydra, the hypostome, is a key body part for developmental control and the nervous system. We herein examined genes specifically expressed in the head region of Hydra oligactis using suppression subtractive hybridization (SSH) cloning. A total of 1414 subtracted clones were sequenced and found to be derived from at least 540 different genes by BLASTN analyses. Approximately 25% of the subtracted clones had sequences encoding thrombospondin type-1 repeat (TSR) domains, and were derived from 17 genes. We identified 11 TSR domain-containing genes among the top 36 genes that were the most frequently detected in our SSH library. Whole-mount in situ hybridization analyses confirmed that at least 13 out of 17 TSR domain-containing genes were expressed in the hypostome of Hydra oligactis. The prominent expression of TSR domain-containing genes suggests that these genes play significant roles in the hypostome of Hydra oligactis. PMID:27043211

[Construction of fetal mesenchymal stem cell cDNA subtractive library].

PubMed

Yang, Li; Wang, Dong-Mei; Li, Liang; Bai, Ci-Xian; Cao, Hua; Li, Ting-Yu; Pei, Xue-Tao

2002-04-01

To identify differentially expressed genes between fetal mesenchymal stem cell (MSC) and adult MSC, especially specified genes expressed in fetal MSC, a cDNA subtractive library of fetal MSC was constructed using suppression subtractive hybridization (SSH) technique. At first, total RNA was isolated from fetal and adult MSC. Using SMART PCR synthesis method, single-strand and double-strand cDNAs were synthesized. After Rsa I digestion, fetal MSC cDNAs were divided into two groups and ligated to adaptor 1 and adaptor 2 respectively. Results showed that the amplified library contains 890 clones. Analysis of 890 clones with PCR demonstrated that 768 clones were positive. The positive rate is 86.3%. The size of inserted fragments in these positive clones was between 0.2 - 1 kb, with an average of 400 - 600 bp. SSH is a convenient and effective method for screening differentially expressed genes. The constructed cDNA subtractive library of fetal MSC cDNA lays solid foundation for screening and cloning new and specific function related genes of fetal MSC.

Effect of barrier height on friction behavior of the semiconductors silicon and gallium arsenide in contact with pure metals

NASA Technical Reports Server (NTRS)

Mishina, H.; Buckley, D. H.

1984-01-01

Friction experiments were conducted for the semiconductors silicon and gallium arsenide in contact with pure metals. Polycrystalline titanium, tantalum, nickel, palladium, and platinum were made to contact a single crystal silicon (111) surface. Indium, nickel, copper, and silver were made to contact a single crystal gallium arsenide (100) surface. Sliding was conducted both in room air and in a vacuum of 10 to the minus 9th power torr. The friction of semiconductors in contact with metals depended on a Schottky barrier height formed at the metal semiconductor interface. Metals with a higher barrier height on semiconductors gave lower friction. The effect of the barrier height on friction behavior for argon sputtered cleaned surfaces in vacuum was more specific than that for the surfaces containing films in room air. With a silicon surface sliding on titanium, many silicon particles back transferred. In contrast, a large quantity of indium transferred to the gallium arsenide surface.

Analyses of Sea Surface Height, Bottom Pressure and Acoustic Travel Time in the Japan/East Sea

DTIC Science & Technology

2006-01-01

ANALYSES OF SEA SURFACE HEIGHT, BOTTOM PRESSURE AND ACOUSTIC TRAVEL TIME IN THE JAPAN/EAST SEA BY YONGSHENG XU A DISSERTATION SUBMITTED IN PARTIAL...COVERED 00-00-2006 to 00-00-2006 4. TITLE AND SUBTITLE Analyses of Sea Surface Height, Bottom Pressure and Acoustic Travel Time in the Japan/East Sea...1999 to July 2001. The PIESs recorded hourly vertical acoustic travel time and pressure, which are respectively good proxies of baroclinic and

Non-Genomic Estrogen Regulation of Ion Transport and Airway Surface Liquid Dynamics in Cystic Fibrosis Bronchial Epithelium

PubMed Central

Saint-Criq, Vinciane; Kim, Sung Hoon; Katzenellenbogen, John A.; Harvey, Brian J.

2013-01-01

Male cystic fibrosis (CF) patients survive longer than females and lung exacerbations in CF females vary during the estrous cycle. Estrogen has been reported to reduce the height of the airway surface liquid (ASL) in female CF bronchial epithelium. Here we investigated the effect of 17β-estradiol on the airway surface liquid height and ion transport in normal (NuLi-1) and CF (CuFi-1) bronchial epithelial monolayers. Live cell imaging using confocal microscopy revealed that airway surface liquid height was significantly higher in the non-CF cells compared to the CF cells. 17β-estradiol (0.1–10 nM) reduced the airway surface liquid height in non-CF and CF cells after 30 min treatment. Treatment with the nuclear-impeded Estrogen Dendrimer Conjugate mimicked the effect of free estrogen by reducing significantly the airway surface liquid height in CF and non-CF cells. Inhibition of chloride transport or basolateral potassium recycling decreased the airway surface liquid height and 17β-estradiol had no additive effect in the presence of these ion transporter inhibitors. 17β-estradiol decreased bumetanide-sensitive transepithelial short-circuit current in non-CF cells and prevented the forskolin-induced increase in ASL height. 17β-estradiol stimulated an amiloride-sensitive transepithelial current and increased ouabain-sensitive basolateral short-circuit current in CF cells. 17β-estradiol increased PKCδ activity in CF and non-CF cells. These results demonstrate that estrogen dehydrates CF and non-CF ASL, and these responses to 17β-estradiol are non-genomic rather than involving the classical nuclear estrogen receptor pathway. 17β-estradiol acts on the airway surface liquid by inhibiting cAMP-mediated chloride secretion in non-CF cells and increasing sodium absorption via the stimulation of PKCδ, ENaC and the Na+/K+ATPase in CF cells. PMID:24223826

Tracking the Effect of Adatom Electronegativity on Systematically Modified AlGaN/GaN Schottky Interfaces.

PubMed

Reiner, Maria; Pietschnig, Rudolf; Ostermaier, Clemens

2015-10-21

The influence of surface modifications on the Schottky barrier height for gallium nitride semiconductor devices is frequently underestimated or neglected in investigations thereof. We show that a strong dependency of Schottky barrier heights for nickel/aluminum-gallium nitride (0001) contacts on the surface terminations exists: a linear correlation of increasing barrier height with increasing electronegativity of superficial adatoms is observed. The negatively charged adatoms compete with the present nitrogen over the available gallium (or aluminum) orbital to form an electrically improved surface termination. The resulting modification of the surface dipoles and hence polarization of the surface termination causes observed band bending. Our findings suggest that the greatest Schottky barrier heights are achieved by increasing the concentration of the most polarized fluorine-gallium (-aluminum) bonds at the surface. An increase in barrier height from 0.7 to 1.1 eV after a 15% fluorine termination is obtained with ideality factors of 1.10 ± 0.05. The presence of surface dipoles that are changing the surface energy is proven by the sessile drop method as the electronegativity difference and polarization influences the contact angle. The extracted decrease in the Lifshitz-van-der-Waals component from 48.8 to 40.4 mJ/m(2) with increasing electronegativity and concentration of surface adatoms confirms the presence of increasing surface dipoles: as the polarizability of equally charged anions decreases with increasing electronegativity, the diiodomethane contact angles increase significantly from 14° up to 39° after the 15% fluorine termination. Therefore, a linear correlation between increasing anion electronegativity of the (Al)GaN termination and total surface energy within a 95% confidence interval is obtained. Furthermore, our results reveal a generally strong Lewis basicity of (Al)GaN surfaces explaining the high chemical inertness of the surfaces.

Correction of localized shape errors on optical surfaces by altering the localized density of surface or near-surface layers

DOEpatents

Taylor, John S.; Folta, James A.; Montcalm, Claude

2005-01-18

Figure errors are corrected on optical or other precision surfaces by changing the local density of material in a zone at or near the surface. Optical surface height is correlated with the localized density of the material within the same region. A change in the height of the optical surface can then be caused by a change in the localized density of the material at or near the surface.

From density to interface fluctuations: The origin of wavelength dependence in surface tension

NASA Astrophysics Data System (ADS)

Hiester, Thorsten

2008-12-01

The height-height correlation function for a fluctuating interface between two coexisting bulk phases is derived by means of general equilibrium properties of the corresponding density-density correlation function. A wavelength-dependent surface tension γ(q) can be defined and expressed in terms of the direct correlation function c(r,r') , the equilibrium density profile ρ0(r) , and an operator which relates density to surface configurations. Neither the concept of an effective interface Hamiltonian nor the difference in pressure is needed to determine the general structure of the height-height correlations or γ(q) , respectively. This result generalizes the Mecke-Dietrich surface tension γMD(q) [Phys. Rev. E 59, 6766 (1999)] and modifies recently published criticism concerning γMD(q) [Tarazona, Checa, and Chacón, Phys. Rev. Lett. 99, 196101 (2007)].

The Aging of the U.S. Population: Human Resource Implications.

ERIC Educational Resources Information Center

Morrison, Malcolm H.

1983-01-01

This article argues that in the upcoming decades, older workers will be competing against the largest cohort of middle-aged workers in our country's history. In the absence of other options, the elderly may feel increased pressure to retire or work part time. (Author/SSH)

Direct numerical simulation of flow over dissimilar, randomly distributed roughness elements: A systematic study on the effect of surface morphology on turbulence

NASA Astrophysics Data System (ADS)

Forooghi, Pourya; Stroh, Alexander; Schlatter, Philipp; Frohnapfel, Bettina

2018-04-01

Direct numerical simulations are used to investigate turbulent flow in rough channels, in which topographical parameters of the rough wall are systematically varied at a fixed friction Reynolds number of 500, based on a mean channel half-height h and friction velocity. The utilized roughness generation approach allows independent variation of moments of the surface height probability distribution function [thus root-mean-square (rms) surface height, skewness, and kurtosis], surface mean slope, and standard deviation of the roughness peak sizes. Particular attention is paid to the effect of the parameter Δ defined as the normalized height difference between the highest and lowest roughness peaks. This parameter is used to understand the trends of the investigated flow variables with departure from the idealized case where all roughness elements have the same height (Δ =0 ). All calculations are done in the fully rough regime and for surfaces with high slope (effective slope equal to 0.6-0.9). The rms roughness height is fixed for all cases at 0.045 h and the skewness and kurtosis of the surface height probability density function vary in the ranges -0.33 to 0.67 and 1.9 to 2.6, respectively. The goal of the paper is twofold: first, to investigate the possible effect of topographical parameters on the mean turbulent flow, Reynolds, and dispersive stresses particularly in the vicinity of the roughness crest, and second, to investigate the possibility of using the wall-normal turbulence intensity as a physical parameter for parametrization of the flow. Such a possibility, already suggested for regular roughness in the literature, is here extended to irregular roughness.

Using ship-borne GNSS data for geoid model validation at the Baltic Sea

NASA Astrophysics Data System (ADS)

Nordman, Maaria; Kuokkanen, Jaakko; Bilker-Koivula, Mirjam; Koivula, Hannu; Häkli, Pasi; Lahtinen, Sonja

2017-04-01

We present a study of geoid model validation using ship-borne GNSS data on the Bothnian Bay of the Baltic Sea. In autumn 2015 a dedicated gravity survey took place in the Bothnian Bay on board of the surveying vessel Airisto as a part of the FAMOS (Finalising surveys for the Baltic motorways of the sea) Freja project, which is supported by the European Commission with the Connecting Europe Facility. The gravity data was collected to test older existing gravity data in the area and to contribute to a new improved geoid model for the Baltic Sea. The raw GNSS and IMU data of the vessel were recorded in order to study the possibilities for validating geoid models at sea. In order to derive geoid heights from GNSS-measurements at sea, the GNSS measurements must first be reduced to sea level. The instant sea level, also called sea surface height, must then be modelled and removed in order to get the GNSS positions at the zero height. In theory, the resulting GNSS heights are the geoid heights, giving the distance between the ellipsoid and the geoid surface. There were altogether 46 lines measured during the campaign on the area. The 1 Hz GNSS-IMU observations were post-processed using the Applanix POSPac MMS 7.1 software. Different processing options were tested and the Single Base -solution was found to be the best strategy. There were some issues with the quality of the data and cycle slips and thus, 37 of the lines were of adequate quality for the geoid validation. The final coordinates were transferred to the coordinate systems related to the geoid models used. Translation of the processed heights to sea level was performed taking the pitch and roll effects of the vessel into account. Also the effects of static and dynamic draft (squat) were applied. For the reduction from sea surface to geoid surface, the sea surface heights were derived from tide gauge data and also from a physical model for the Baltic Sea. The residual errors between the GNSS-derived geoid heights and geoid heights from geoid models were as low as 2 mm on some lines. When the overall mean is taken from the mean of all lines, the lowest value of 2.1 cm, was achieved using a physical model for the sea surface and comparing with the NKG2015 geoid model. The NKG2015 model together with the tide gauge sea surface yield 3.1 cm. Comparing with Finnish geoid model gave 3.7 and 4.7 cm for the physical model and tide gauge surfaces, respectively. The mean standard deviations were below 5 cm, when the data was filtered with a 10 min. moving average. Thus, it can be said that with high quality GNSS solution and enough information on the coordinate systems, vessel movements and the sea surface heights, geoid heights can be recovered from GNSS observations at sea.

Remote sensing of Gulf Stream using GEOS-3 radar altimeter

NASA Technical Reports Server (NTRS)

Leitao, C. D.; Huang, N. E.; Parra, C. G.

1978-01-01

Radar altimeter measurements from the GEOS-3 satellite to the ocean surface indicated the presence of expected geostrophic height differences across the the Gulf Stream. Dynamic sea surface heights were found by both editing and filtering the raw sea surface heights and then referencing these processed data to a 5 minute x 5 minute geoid. Any trend between the processed data and the geoid was removed by subtracting out a linear fit to the residuals in the open ocean. The mean current velocity of 107 + or - 29 cm/sec calculated from the dynamic heights for all orbits corresponded with velocities obtained from hydrographic methods. Also, dynamic topographic maps were produced for August, September, and October 1975. Results pointed out limitations in the accuracy of the geoid, height anomaly deteriorations due to filtering, and lack of dense time and space distribution of measurements.

Verification and transfer of thermal pollution model. Volume 4: User's manual for three-dimensional rigid-lid model

NASA Technical Reports Server (NTRS)

Lee, S. S.; Nwadike, E. V.; Sinha, S. E.

1982-01-01

The theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model are described. Model verification at two sites, a separate user's manual for each model are included. The 3-D model has two forms: free surface and rigid lid. The former allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth, estuaries and coastal regions. The latter is suited for small surface wave heights compared to depth because surface elevation was removed as a parameter. These models allow computation of time dependent velocity and temperature fields for given initial conditions and time-varying boundary conditions. The free surface model also provides surface height variations with time.

Comparison between reflectivity statistics at heights of 3 and 6 km and rain rate statistics at ground level

NASA Technical Reports Server (NTRS)

Crane, R. K.

1975-01-01

An experiment was conducted to study the relations between the empirical distribution functions of reflectivity at specified locations above the surface and the corresponding functions at the surface. A bistatic radar system was used to measure continuously the scattering cross section per unit volume at heights of 3 and 6 km. A frequency of 3.7 GHz was used in the tests. It was found that the distribution functions for reflectivity may significantly change with height at heights below the level of the melting layer.

Quantifying changes in land-surface height in bioenergy palm oil plantations (Sumatra) using InSAR time series.

NASA Astrophysics Data System (ADS)

Zhou, Zhiwei; Waldron, Susan; Li, Zhenhong

2013-04-01

Tropical peatlands in Southeast Asia cover ~ 439,238 km sq. and represent ~77 % of global tropical peatland carbon stores and ~11 % of global peatland area. These landscapes are substantial C stores accounting for ~17-19 % of the global peat C pool (Page et al., 2010). Within southeast Asia, Indonesian peatlands hold most C (57.4 Pg, 65 %), followed by Malaysia (9.1 Pg, 10 %). In recent decades the drive to use these soils for agriculture and often the palm oil biogenergy crop, has driven fire-clearing, deforestation and drainage of these carbon landscapes. The drainage can lead to respiration of the soil carbon store and subsidence of the peatland (Hooijer et al., 2012), reducing their strength as a current C store and their capacity for future soil C storage. Using field-based surveying to monitor changes in the past peatland surface height, and over the large areas typical of commercial agricultural palm oil plantations, is challenging such that measurements are more likely to describe a small area and be only a snapshot in time. Upscaling and understanding the rate of change in surface height through time may be overcome using remote sensing approaches. Here we present data on the change in peatland surface height in Indonesia palm oil plantations, detected using the Interferometry Synthetic Aperture Radar (InSAR) Small BAseline Set (SBAS) approach (Berardino et al., 2002). Using data from July 2007 to January 2011, we have generated a map of the rate of change of mean height, and time series of change in surface height for several plantation areas. To do this we used two independent ALOS L-band tracks SAR images, as there is a lack of ground data for validation, coherence in output provides confidence the results are representative. Our analysis to date shows that in drained and planted palm oil areas: 1) the rate of change in surface height (decrease) can vary; 2) the decrease in surface height can be up to 5 cm/year; 3) the largest decrease in surface height observed was 15 cm. Here we will explain further our approach to estimating change in surface height and consider these results in the context of the loss of regional and global C storage. Berardino, P., Fornaro, G., Lanari, R. & Sansosti, E. 2002. A new algorithm for surface deformation monitoring based on small baseline differential SAR interferograms. Geoscience and Remote Sensing, IEEE Transactions on, 40, 2375-2383. Hooijer, A., Page, S., Jauhiainen, J., Lee, W. A., Lu, X. X., Idris, A. & Anshari, G. 2012. Subsidence and carbon loss in drained tropical peatlands. Biogeosciences, 9, 1053-1071. Page, S., Wüst R.& Banks C. 2010. Past and present carbon accumulation and loss in Southeast Asian peatlands. PAGES news, 18, 25-27.

The Correlation of Learning Styles with Student Performance In Academic and Clinical Course Work.

ERIC Educational Resources Information Center

Cunningham, M. Jo; Trickey, Becki A.

1983-01-01

The purpose of this study was to determine any correlation between learning styles and performance in the academic and clinical course work of occupational therapy students at the Medical University of South Carolina. (Availability: RAM Associates LTD., P.O. Box N, Laurel, MD 20707) (SSH)

Testing the Shallow Structure Hypothesis in L2 Japanese

ERIC Educational Resources Information Center

Smith, Megan

2016-01-01

Language processing heuristics are one of the possible sources of divergence between first and second language systems. The Shallow Structure Hypothesis (SSH) (Clahsen and Felser, 2006) proposes that non-native language processing relies primarily on semantic, and not syntactic, information, and that second language (L2) processing is therefore…

Application of Competency Testing Mandates to Handicapped Children.

ERIC Educational Resources Information Center

McCarthy, Martha M.

1983-01-01

The author considers the legality of minimum competency testing diploma requirements applied to the handicapped in light of (1) their constitutional and statutory rights to nondiscriminatory treatment, (2) their statutory right to an appropriate education, and (3) their constitutional right to substantive and procedural due process. (Author/SSH)

Current Developments in DETER Cybersecurity Testbed Technology

DTIC Science & Technology

2015-12-08

management on PlanetLab [12], such as Plush and Nebula [4], PlMan [19], Stork [20], pShell [21], Planetlab Application Manager [22], parallel open...SSH tools [23], plDist [24], Nixes [25], PLDeploy [26] and vxargs [27]. With the exception of Plush and Nebula , these tools are all low-level

Operations Management and Curriculum Design.

ERIC Educational Resources Information Center

Slack, Nigel

1983-01-01

The last few years have seen developments in the academic treatment of operations management which both broaden the subject to include a much wider range of industries in the nonmanufacturing sectors and place the operations function in a more strategic context. (MEAD Subscriptions, CSML, University of Lancaster, Lancaster LA1 4YX, England) (SSH)

Identifying differentially expressed genes in leaves of Glycine tomentella in the presence of the fungal pathogen Phakopsora pachyrhizi

USDA-ARS?s Scientific Manuscript database

Transcription profiles of Glycine tomentella genotypes having different responses to soybean rust, caused by the fungal pathogen Phakopsora pachyrhizi, were compared using suppression subtractive hybridization (SSH). Four cDNA libraries were constructed from infected and non-infected leaves of resis...

Productivity Increased in 1981 in Most Industries Measured.

ERIC Educational Resources Information Center

Herman, Arthur S.

1982-01-01

Although productivity growth slowed during 1976-81 for most of the industries surveyed, a majority of significant industries showed advances in output per employee hour in 1981. The growth in industry productivity was consistent with the gain in the nonfarm business sector of the economy, which grew 1.4 percent. (SSH)

Ethical Problems in the Practice of Organization Development.

ERIC Educational Resources Information Center

Wooten, Kevin C.; White, Louis P.

1983-01-01

This article discusses forces that affect the professional ethics of organizational development (OD). Both driving forces and restraining forces have influenced the current status of OD ethics. These forces have operated since the emergence of OD itself, and their fluctuating intensity results in the dynamic nature of the OD profession. (SSH)

Education and Training: Have the Japanese Beaten Us Again?

ERIC Educational Resources Information Center

Rehder, Robert R.

1983-01-01

Japan is often likened to a giant corporation--Japan Inc.--in which the educational credentials of its employees largely determine their social and economic status. This first international report of 1983 discusses why the U.S. should study the pros and cons of the Japanese educational system. (SSH)

Time-Series Evidence of the Effect of the Minimum Wage on Youth Employment and Unemployment.

ERIC Educational Resources Information Center

Brown, Charles; And Others

1983-01-01

The study finds that a 10 percent increase in the federal minimum wage (or the coverage rate) would reduce teenage (16-19) employment by about one percent, which is at the lower end of the range of estimates from previous studies. (Author/SSH)

Occupational Safety and Health Systems: A Three-Country Comparison.

ERIC Educational Resources Information Center

Singleton, W. T.

1983-01-01

This article compares the occupational safety and health systems of Switzerland, the United Kingdom, and the United States, looking at the origins of their legislation and its effects on occupational safety and health, with a view to determining what lessons may emerge, particularly for developing countries. (Author/SSH)

14 CFR 77.17 - Obstruction standards.

Code of Federal Regulations, 2014 CFR

2014-01-01

... feet vertical distance. (2) 15 feet for any other public roadway. (3) 10 feet or the height of the... greater height than any of the following heights or surfaces: (1) A height of 499 feet AGL at the site of the object. (2) A height that is 200 feet AGL, or above the established airport elevation, whichever...

14 CFR 77.17 - Obstruction standards.

Code of Federal Regulations, 2012 CFR

2012-01-01

... feet vertical distance. (2) 15 feet for any other public roadway. (3) 10 feet or the height of the... greater height than any of the following heights or surfaces: (1) A height of 499 feet AGL at the site of the object. (2) A height that is 200 feet AGL, or above the established airport elevation, whichever...

TOPEX/El Niño Watch - Double

NASA Image and Video Library

1997-12-08

This image of the Pacific Ocean was produced using sea surface height measurements taken by NASA U.S./French TOPEX/Poseidon satellite. The image shows sea surface height relative to normal ocean conditions on Dec. 1, 1997.

NASA's Space Lidar Measurements of Earth and Planetary Surfaces

NASA Technical Reports Server (NTRS)

Abshire, James B.

2010-01-01

A lidar instrument on a spacecraft was first used to measure planetary surface height and topography on the Apollo 15 mission to the Moon in 1971, The lidar was based around a flashlamp-pumped ruby laser, and the Apollo 15-17 missions used them to make a few thousand measurements of lunar surface height from orbit. With the advent of diode pumped lasers in the late 1980s, the lifetime, efficiency, resolution and mass of lasers and space lidar all improved dramatically. These advances were utilized in NASA space missions to map the shape and surface topography of Mars with > 600 million measurements, demonstrate initial space measurements of the Earth's topography, and measured the detailed shape of asteroid. NASA's ICESat mission in Earth orbit just completed its polar ice measurement mission with almost 2 billion measurements of the Earth's surface and atmosphere, and demonstrated measurements to Antarctica and Greenland with a height resolution of a few em. Space missions presently in cruise phase and in operation include those to Mercury and a topographic mapping mission of the Moon. Orbital lidar also have been used in experiments to demonstrate laser ranging over planetary distances, including laser pulse transmission from Earth to Mars orbit. Based on the demonstrated value of the measurements, lidar is now the preferred measurement approach for many new scientific space missions. Some missions planned by NASA include a planetary mission to measure the shape and dynamics of Europa, and several Earth orbiting missions to continue monitoring ice sheet heights, measure vegetation heights, assess atmospheric CO2 concentrations, and to map the Earth surface topographic heights with 5 m spatial resolution. This presentation will give an overview of history, ongoing work, and plans for using space lidar for measurements of the surfaces of the Earth and planets.

Neural network-based estimates of Southern Ocean net community production from in-situ O2 / Ar and satellite observation: a methodological study

NASA Astrophysics Data System (ADS)

Chang, C.-H.; Johnson, N. C.; Cassar, N.

2013-10-01

Southern Ocean organic carbon export plays an important role in the global carbon cycle, yet its basin-scale climatology and variability are uncertain due to limited coverage of in situ observations. In this study, a neural network approach based on the self-organizing map (SOM) is adopted to construct weekly gridded (1° × 1°) maps of organic carbon export for the Southern Ocean from 1998 to 2009. The SOM is trained with in situ measurements of O2 / Ar-derived net community production (NCP) that are tightly linked to the carbon export in the mixed layer on timescales of 1-2 weeks, and six potential NCP predictors: photosynthetically available radiation (PAR), particulate organic carbon (POC), chlorophyll (Chl), sea surface temperature (SST), sea surface height (SSH), and mixed layer depth (MLD). This non-parametric approach is based entirely on the observed statistical relationships between NCP and the predictors, and therefore is strongly constrained by observations. A thorough cross-validation yields three retained NCP predictors, Chl, PAR, and MLD. Our constructed NCP is further validated by good agreement with previously published independent in situ derived NCP of weekly or longer temporal resolution through real-time and climatological comparisons at various sampling sites. The resulting November-March NCP climatology reveals a pronounced zonal band of high NCP roughly following the subtropical front in the Atlantic, Indian and western Pacific sectors, and turns southeastward shortly after the dateline. Other regions of elevated NCP include the upwelling zones off Chile and Namibia, Patagonian Shelf, Antarctic coast, and areas surrounding the Islands of Kerguelen, South Georgia, and Crozet. This basin-scale NCP climatology closely resembles that of the satellite POC field and observed air-sea CO2 flux. The long-term mean area-integrated NCP south of 50° S from our dataset, 14 mmol C m-2 d-1, falls within the range of 8.3-24 mmol C m-2 d-1 from other model estimates. A broad agreement is found in the basin-wide NCP climatology among various models but with significant spatial variations, particularly in the Patagonian Shelf. Our approach provides a comprehensive view of the Southern Ocean NCP climatology and a potential opportunity to further investigate interannual and intraseasonal variability.

Neural network-based estimates of Southern Ocean net community production from in situ O2 / Ar and satellite observation: a methodological study

NASA Astrophysics Data System (ADS)

Chang, C.-H.; Johnson, N. C.; Cassar, N.

2014-06-01

Southern Ocean organic carbon export plays an important role in the global carbon cycle, yet its basin-scale climatology and variability are uncertain due to limited coverage of in situ observations. In this study, a neural network approach based on the self-organizing map (SOM) is adopted to construct weekly gridded (1° × 1°) maps of organic carbon export for the Southern Ocean from 1998 to 2009. The SOM is trained with in situ measurements of O2 / Ar-derived net community production (NCP) that are tightly linked to the carbon export in the mixed layer on timescales of one to two weeks and with six potential NCP predictors: photosynthetically available radiation (PAR), particulate organic carbon (POC), chlorophyll (Chl), sea surface temperature (SST), sea surface height (SSH), and mixed layer depth (MLD). This nonparametric approach is based entirely on the observed statistical relationships between NCP and the predictors and, therefore, is strongly constrained by observations. A thorough cross-validation yields three retained NCP predictors, Chl, PAR, and MLD. Our constructed NCP is further validated by good agreement with previously published, independent in situ derived NCP of weekly or longer temporal resolution through real-time and climatological comparisons at various sampling sites. The resulting November-March NCP climatology reveals a pronounced zonal band of high NCP roughly following the Subtropical Front in the Atlantic, Indian, and western Pacific sectors, and turns southeastward shortly after the dateline. Other regions of elevated NCP include the upwelling zones off Chile and Namibia, the Patagonian Shelf, the Antarctic coast, and areas surrounding the Islands of Kerguelen, South Georgia, and Crozet. This basin-scale NCP climatology closely resembles that of the satellite POC field and observed air-sea CO2 flux. The long-term mean area-integrated NCP south of 50° S from our dataset, 17.9 mmol C m-2 d-1, falls within the range of 8.3 to 24 mmol C m-2 d-1 from other model estimates. A broad agreement is found in the basin-wide NCP climatology among various models but with significant spatial variations, particularly in the Patagonian Shelf. Our approach provides a comprehensive view of the Southern Ocean NCP climatology and a potential opportunity to further investigate interannual and intraseasonal variability.

Step-height standards based on the rapid formation of monolayer steps on the surface of layered crystals

NASA Astrophysics Data System (ADS)

Komonov, A. I.; Prinz, V. Ya.; Seleznev, V. A.; Kokh, K. A.; Shlegel, V. N.

2017-07-01

Metrology is essential for nanotechnology, especially for structures and devices with feature sizes going down to nm. Scanning probe microscopes (SPMs) permits measurement of nanometer- and subnanometer-scale objects. Accuracy of size measurements performed using SPMs is largely defined by the accuracy of used calibration measures. In the present publication, we demonstrate that height standards of monolayer step (∼1 and ∼0.6 nm) can be easily prepared by cleaving Bi2Se3 and ZnWO4 layered single crystals. It was shown that the conducting surface of Bi2Se3 crystals offers height standard appropriate for calibrating STMs and for testing conductive SPM probes. Our AFM study of the morphology of freshly cleaved (0001) Bi2Se3 surfaces proved that such surfaces remained atomically smooth during a period of at least half a year. The (010) surfaces of ZnWO4 crystals remained atomically smooth during one day, but already two days later an additional nanorelief of amplitude ∼0.3 nm appeared on those surfaces. This relief, however, did not further grow in height, and it did not hamper the calibration. Simplicity and the possibility of rapid fabrication of the step-height standards, as well as their high stability, make these standards available for a great, permanently growing number of users involved in 3D printing activities.

TOPEX/El Nino Watch - Satellite shows El Nino-related Sea Surface Height, Mar, 14, 1998

NASA Technical Reports Server (NTRS)

1998-01-01

This image of the Pacific Ocean was produced using sea surface height measurements taken by the U.S.-French TOPEX/Poseidon satellite. The image shows sea surface height relative to normal ocean conditions on Mar. 14, 1998 and sea surface height is an indicator of the heat content of the ocean. The image shows that the sea surface height along the central equatorial Pacific has returned to a near normal state. Oceanographers indicate this is a classic pattern, typical of a mature El Nino condition. Remnants of the El Nino warm water pool, shown in red and white, are situated to the north and south of the equator. These sea surface height measurements have provided scientists with a detailed view of how the 1997-98 El Nino's warm pool behaves because the TOPEX/Poseidon satellite measures the changing sea surface height with unprecedented precision. In this image, the white and red areas indicate unusual patterns of heat storage; in the white areas, the sea surface is between 14 and 32 centimeters (6 to 13 inches) above normal; in the red areas, it's about 10 centimeters (4 inches) above normal. The green areas indicate normal conditions, while purple (the western Pacific) means at least 18 centimeters (7 inches) below normal sea level. The El Nino phenomenon is thought to be triggered when the steady westward blowing trade winds weaken and even reverse direction. This change in the winds allows a large mass of warm water (the red and white area) that is normally located near Australia to move eastward along the equator until it reaches the coast of South America. The displacement of so much warm water affects evaporation, where rain clouds form and, consequently, alters the typical atmospheric jet stream patterns around the world. Using satellite imagery, buoy and ship data, and a forecasting model of the ocean-atmosphere system, the National Oceanic and Atmospheric Administration, (NOAA), has continued to issue an advisory indicating the so-called El Nino weather conditions that have impacted much of the United States and the world are expected to remain through the spring.

TOPEX/El Nino Watch - La Nina Conditions Likely to Prevail, October 10, 1999

NASA Technical Reports Server (NTRS)

1999-01-01

A repeat of last year's mild La Nina conditions -- with a stormy winter in the Pacific Northwest and a dry winter in the southwestern United States -- will be the likely outcome of sea-surface heights observed by NASA's TOPEX/Poseidon satellite, scientists say.

TOPEX/Poseidon has detected lower than normal sea-surface heights in the eastern North Pacific and unusually high sea-surface heights in the western and mid-latitude Pacific. The height of the sea surface over a given area is an indicator of ocean temperature and other factors that influence climate.

The latest measurements, taken during a 10-day data cycle October 5-15, are available at http://www.jpl.nasa.gov/elnino . Sea-surface height is shown relative to normal (green) and reveals cooler water (blue and purple) measuring about 14 centimeters (6 inches) lower in the eastern North Pacific, from the Gulf of Alaska to central Alaska, and along the equator. The cooling trend sets the stage for another La Nina this winter.

'A mirror image of that oceanic profile prevails in the western and mid-latitude Pacific Ocean, where higher than normal sea-surface heights (red and white) are currently about 20 centimeters or 8 inches. Unusually warm temperatures (shown in red and white) have persisted and topped last year's temperatures,' said Dr. William Patzert, an oceanographer at NASA's Jet Propulsion Laboratory, Pasadena, CA.

'These unbalanced conditions will undoubtedly exert a very strong influence on climate over North America this fall and winter,' Patzert said. 'Our profile of high sea-surface heights and warm temperatures in the western Pacific Ocean contrasts with low sea-surface heights and cool conditions in the eastern and equatorial Pacific. Those conditions will have a powerful impact on the weather system delivering jet streams out of the North Pacific.'

Conditions are ripe for a stormy, wet winter in the Pacific Northwest and a dry, relatively rainless winter in Southern California and the Southwest, the data show. 'Clearly, these unusual conditions, which have persisted for 2 1/2 years, will not be returning to normal any time soon,' Patzert said. 'This climate imbalance is big and we're definitely going through a decade of wild climatic behavior. But when we look back at the climate record over the past century, we've seen behavior like this before.'

The TOPEX/Poseidon satellite's measurements have provided scientists with a detailed view of the 1997-1999 El Nino/La Nina climate pattern by measuring the changing sea-surface height with unprecedented precision.

For more information, please visit the TOPEX/Poseidon project web page at http://topex-www.jpl.nasa.gov/

Effect of the plate surface characteristics and gap height on yield stresses of a magnetorheological fluid

NASA Astrophysics Data System (ADS)

Jonkkari, I.; Kostamo, E.; Kostamo, J.; Syrjala, S.; Pietola, M.

2012-07-01

Effects of the plate material, surface roughness and measuring gap height on static and dynamic yield stresses of a magnetorheological (MR) fluid were investigated with a commercial plate-plate magnetorheometer. Magnetic and non-magnetic plates with smooth (Ra ˜ 0.3 μm) and rough (Ra ˜ 10 μm) surface finishes were used. It was shown by Hall probe measurements and finite element simulations that the use of magnetic plates or higher gap heights increases the level of magnetic flux density and changes the shape of the radial flux density profile. The yield stress increase caused by these factors was determined and subtracted from the measured values in order to examine only the effect of the wall characteristics or the gap height. Roughening of the surfaces offered a significant increase in the yield stresses for non-magnetic plates. With magnetic plates the yield stresses were higher to start with, but roughening did not increase them further. A significant part of the difference in measured stresses between rough non-magnetic and magnetic plates was caused by changes in magnetic flux density rather than by better contact of the particles to the plate surfaces. In a similar manner, an increase in gap height from 0.25 to 1.00 mm can lead to over 20% increase in measured stresses due to changes in the flux density profile. When these changes were compensated the dynamic yield stresses generally remained independent of the gap height, even in the cases where it was obvious that the wall slip was present. This suggests that with MR fluids the wall slip cannot be reliably detected by comparison of flow curves measured at different gap heights.

Estimating the vegetation canopy height using micro-pulse photon-counting LiDAR data.

PubMed

Nie, Sheng; Wang, Cheng; Xi, Xiaohuan; Luo, Shezhou; Li, Guoyuan; Tian, Jinyan; Wang, Hongtao

2018-05-14

The upcoming space-borne LiDAR satellite Ice, Cloud and land Elevation Satellite-2 (ICESat-2) is scheduled to launch in 2018. Different from the waveform LiDAR system onboard the ICESat, ICESat-2 will use a micro-pulse photon-counting LiDAR system. Thus new data processing algorithms are required to retrieve vegetation canopy height from photon-counting LiDAR data. The objective of this paper is to develop and validate an automated approach for better estimating vegetation canopy height. The new proposed method consists of three key steps: 1) filtering out the noise photons by an effective noise removal algorithm based on localized statistical analysis; 2) separating ground returns from canopy returns using an iterative photon classification algorithm, and then determining ground surface; 3) generating canopy-top surface and calculating vegetation canopy height based on canopy-top and ground surfaces. This automatic vegetation height estimation approach was tested to the simulated ICESat-2 data produced from Sigma Space LiDAR data and Multiple Altimeter Beam Experimental LiDAR (MABEL) data, and the retrieved vegetation canopy heights were validated by canopy height models (CHMs) derived from airborne discrete-return LiDAR data. Results indicated that the estimated vegetation canopy heights have a relatively strong correlation with the reference vegetation heights derived from airborne discrete-return LiDAR data (R 2 and RMSE values ranging from 0.639 to 0.810 and 4.08 m to 4.56 m respectively). This means our new proposed approach is appropriate for retrieving vegetation canopy height from micro-pulse photon-counting LiDAR data.

Early Student Support for SST Control by Subsurface Mixing during Indian Ocean Monsoons

DTIC Science & Technology

2015-09-30

Lee and Rainville), and NRL (Wijesekera). OBJECTIVES The objectives of this project are to: 1. use satellite-measured SSS , SST, and SSH to...forcing, and 5. synthesize the above information and products to examine links and feedbacks between the SST and SSS of the SLD and local precipitation

Adult Education in the People's Republic of China.

ERIC Educational Resources Information Center

Sidel, Mark

1982-01-01

This report was based on the author's study in China in 1980-81 and on the findings of other observers, Chinese data, and analyses of the post-Mao adult education system (1977-1982). It focuses particularly on the shifts in adult education priorities and programs and on the political and pedagogical debates. (SSH)

International Trends in Productivity and Labor Costs.

ERIC Educational Resources Information Center

Capdevielle, Patricia; And Others

1982-01-01

Productivity increased in 1981 in the United States, Japan, and European countries studied. Gains ranged from 2 to 4 percent in the US, Japan, France, Germany, Italy, and the Netherlands, to 6 percent in England and Denmark, and more than 7 percent in Belgium. In Canada and Sweden, productivity remained essentially unchanged. (SSH)

The Robots Are Coming! Training Tomorrow's High-Tech Workers.

ERIC Educational Resources Information Center

Zemke, Ron

1983-01-01

The United States, running second to Japan in the robot race, is employing 19 percent of the world's robots. This article presents six classes of robots that were defined by the Japanese trade association. All are multifunctional, equipped with a memory device, capable of rotation, and able to replace human workers. (SSH)

Regulating ehrlich and demethiolation pathways for alcohols production by the expression of ubiquitin-protein ligase gene HUWE1.

PubMed

Zhang, Quan; Jia, Kai-Zhi; Xia, Shi-Tao; Xu, Yang-Hua; Liu, Rui-Sang; Li, Hong-Mei; Tang, Ya-Jie

2016-02-10

Ehrlich and demethiolation pathways as two competing branches converted amino acid into alcohols. Controlling both pathways offers considerable potential for industrial applications including alcohols overproduction, flavor-quality control and developing new flavors. While how to regulate ehrlich and demethiolation pathways is still not applicable. Taking the conversion of methionine into methionol and methanethiol for example, we constructed two suppression subtractive cDNA libraries of Clonostachys rosea by using suppression subtractive hybridization (SSH) technology for screening regulators controlling the conversion. E3 ubiquitin-protein ligase gene HUWE1 screened from forward SSH library was validated to be related with the biosynthesis of end products. Overexpressing HUWE1 in C. rosea and S. cerevisiae significantly increased the biosynthesis of methanethiol and its derivatives in demethiolation pathway, while suppressed the biosynthesis of methional and methionol in ehrlich pathway. These results attained the directional regulation of both pathways by overexpressing HUWE1. Thus, HUWE1 has potential to be a key target for controlling and enhancing alcohols production by metabolic engineering.

An SSH library responsive to azadirachtin A constructed in Spodoptera litura Fabricius cell lines.

PubMed

Yan, Chao; Zhang, Zhi-Xiang; Xu, Han-Hong

2012-05-31

The present study revealed differentially expressed genes responsive to azadirachtin A (Aza) in Spodoptera litura cell line through suppression subtractive hybridization. In the Aza-responsive SSH library, approximately 270 sequences represent 53 different identified genes encoding proteins with various predicted functions, and the percentages of the gene clusters were 26.09% (genetic information processing), 11.41% (cell growth and death), 7.07% (metabolism), 6.52% (signal transduction/transport) and 2.72% (immunity), respectively. Eleven clones homologous to identified genes were selected to be confirmed through quantitative real time polymerase chain reaction. Among the eleven clones validated, all but one transcript of lipase showed an increase in SL cell line collected from ETA, whereas the transcripts of other genes were lower in the SL cell line collected from ETA compared with that of UETA. These genes were considered to be related to the response of SL cell line to Aza. These will provide a new clue to uncover the molecular mechanisms of Aza acting on SL cell line. Copyright © 2012 Elsevier B.V. All rights reserved.

Access and accounting schemes of wireless broadband

NASA Astrophysics Data System (ADS)

Zhang, Jian; Huang, Benxiong; Wang, Yan; Yu, Xing

2004-04-01

In this paper, two wireless broadband access and accounting schemes were introduced. There are some differences in the client and the access router module between them. In one scheme, Secure Shell (SSH) protocol is used in the access system. The SSH server makes the authentication based on private key cryptography. The advantage of this scheme is the security of the user's information, and we have sophisticated access control. In the other scheme, Secure Sockets Layer (SSL) protocol is used the access system. It uses the technology of public privacy key. Nowadays, web browser generally combines HTTP and SSL protocol and we use the SSL protocol to implement the encryption of the data between the clients and the access route. The schemes are same in the radius sever part. Remote Authentication Dial in User Service (RADIUS), as a security protocol in the form of Client/Sever, is becoming an authentication/accounting protocol for standard access to the Internet. It will be explained in a flow chart. In our scheme, the access router serves as the client to the radius server.

SSH2S: Hydrogen storage in complex hydrides for an auxiliary power unit based on high temperature proton exchange membrane fuel cells

NASA Astrophysics Data System (ADS)

Baricco, Marcello; Bang, Mads; Fichtner, Maximilian; Hauback, Bjorn; Linder, Marc; Luetto, Carlo; Moretto, Pietro; Sgroi, Mauro

2017-02-01

The main objective of the SSH2S (Fuel Cell Coupled Solid State Hydrogen Storage Tank) project was to develop a solid state hydrogen storage tank based on complex hydrides and to fully integrate it with a High Temperature Proton Exchange Membrane (HT-PEM) fuel cell stack. A mixed lithium amide/magnesium hydride system was used as the main storage material for the tank, due to its high gravimetric storage capacity and relatively low hydrogen desorption temperature. The mixed lithium amide/magnesium hydride system was coupled with a standard intermetallic compound to take advantage of its capability to release hydrogen at ambient temperature and to ensure a fast start-up of the system. The hydrogen storage tank was designed to feed a 1 kW HT-PEM stack for 2 h to be used for an Auxiliary Power Unit (APU). A full thermal integration was possible thanks to the high operation temperature of the fuel cell and to the relative low temperature (170 °C) for hydrogen release from the mixed lithium amide/magnesium hydride system.

TOPEX/El Niño Watch - Warm Water Pool is Increasing, Nov. 10, 1997

NASA Image and Video Library

1997-11-20

This image of the Pacific Ocean was produced using sea surface height measurements taken by the U.S./French TOPEX/Poseidon satellite. The image shows sea surface height relative to normal ocean conditions on Nov. 10, 1997.

Unification of height systems in the frame of GGOS

NASA Astrophysics Data System (ADS)

Sánchez, Laura

2015-04-01

Most of the existing vertical reference systems do not fulfil the accuracy requirements of modern Geodesy. They refer to local sea surface levels, are stationary (do not consider variations in time), realize different physical height types (orthometric, normal, normal-orthometric, etc.), and their combination in a global frame presents uncertainties at the metre level. To provide a precise geodetic infrastructure for monitoring the Earth system, the Global Geodetic Observing System (GGOS) of the International Association of Geodesy (IAG), promotes the standardization of the height systems worldwide. The main purpose is to establish a global gravity field-related vertical reference system that (1) supports a highly-precise (at cm-level) combination of physical and geometric heights worldwide, (2) allows the unification of all existing local height datums, and (3) guarantees vertical coordinates with global consistency (the same accuracy everywhere) and long-term stability (the same order of accuracy at any time). Under this umbrella, the present contribution concentrates on the definition and realization of a conventional global vertical reference system; the standardization of the geodetic data referring to the existing height systems; and the formulation of appropriate strategies for the precise transformation of the local height datums into the global vertical reference system. The proposed vertical reference system is based on two components: a geometric component consisting of ellipsoidal heights as coordinates and a level ellipsoid as the reference surface, and a physical component comprising geopotential numbers as coordinates and an equipotential surface defined by a conventional W0 value as the reference surface. The definition of the physical component is based on potential parameters in order to provide reference to any type of physical heights (normal, orthometric, etc.). The conversion of geopotential numbers into metric heights and the modelling of the reference surface (geoid or quasigeoid determination) are considered as steps of the realization. The vertical datum unification strategy is based on (1) the physical connection of height datums to determine their discrepancies, (2) joint analysis of satellite altimetry and tide gauge records to determine time variations of sea level at reference tide gauges, (3) combination of geometrical and physical heights in a well-distributed and high-precise reference frame to estimate the relationship between the individual vertical levels and the global one, and (4) analysis of GNSS time series at reference tide gauges to separate crustal movements from sea level changes. The final vertical transformation parameters are provided by the common adjustment of the observation equations derived from these methods.

Aliased tidal errors in TOPEX/POSEIDON sea surface height data

NASA Technical Reports Server (NTRS)

Schlax, Michael G.; Chelton, Dudley B.

1994-01-01

Alias periods and wavelengths for the M(sub 2, S(sub 2), N(sub 2), K(sub 1), O(sub 1), and P(sub 1) tidal constituents are calculated for TOPEX/POSEIDON. Alias wavelenghts calculated in previous studies are shown to be in error, and a correct method is presented. With the exception of the K(sub 1) constituent, all of these tidal aliases for TOPEX/POSEIDON have periods shorter than 90 days and are likely to be confounded with long-period sea surface height signals associated with real ocean processes. In particular, the correspondence between the periods and wavelengths of the M(sub 2) alias and annual baroclinic Rossby waves that plagued Geosat sea surface height data is avoided. The potential for aliasing residual tidal errors in smoothed estimates of sea surface height is calculated for the six tidal constituents. The potential for aliasing the lunar tidal constituents M(sub 2), N(sub 2) and O(sub 1) fluctuates with latitude and is different for estimates made at the crossovers of ascending and descending ground tracks than for estimates at points midway between crossovers. The potential for aliasing the solar tidal constituents S(sub 2), K(sub 1) and P(sub 1) varies smoothly with latitude. S(sub 2) is strongly aliased for latitudes within 50 degress of the equator, while K(sub 1) and P(sub 1) are only weakly aliased in that range. A weighted least squares method for estimating and removing residual tidal errors from TOPEX/POSEIDON sea surface height data is presented. A clear understanding of the nature of aliased tidal error in TOPEX/POSEIDON data aids the unambiguous identification of real propagating sea surface height signals. Unequivocal evidence of annual period, westward propagating waves in the North Atlantic is presented.

Evaluation of the wave measurement in a stormy sea by the Along-Track interferometry SAR

NASA Astrophysics Data System (ADS)

Kojima, S.

2015-12-01

NICT developed the along-track interferometry SAR (AT-InSAR) system to detect the running cars and ships and measure sea surface velocity in 2011. The preliminary experiments for the running truck and ship were performed and it confirmed that the system performance was satisfactory to its specifications. In addition, a method to estimate the wave height from the sea surface velocity measured by the AT-InSAR was developed. The preliminary wave height observation was performed in a calm sea, and it was confirmed that the wave height could be estimated from the measured sea surface velocity. The purpose of this study is to check the capability of the ocean waves observation in a stormy sea by the AT-InSAR. Therefore, the ocean wave observation was performed under the low atmospheric pressure. The observation area is the sea surface at 10 km off the coast of Kushiro, south-east to Hokaido, JAPAN on the 4th of March 2015. The wind speed was 8〜10m/s during the observation, and the significant wave height and period were 1.5m and 6.0s. The observation was performed in 2 directions and the accuracy of the estimation results were checked. The significant wave height and period measured by the AT-InSAR agreed with it measured by the wave gage located close to this observation area. In addition, it was confirmed that there were no irregular wave heights in the distribution of the estimated wave height. As a result, it became clear that the AT-InSAR could observe the wave height in a stormy sea.

Estimation of subsurface thermal structure using sea surface height and sea surface temperature

NASA Technical Reports Server (NTRS)

Kang, Yong Q. (Inventor); Jo, Young-Heon (Inventor); Yan, Xiao-Hai (Inventor)

2012-01-01

A method of determining a subsurface temperature in a body of water is disclosed. The method includes obtaining surface temperature anomaly data and surface height anomaly data of the body of water for a region of interest, and also obtaining subsurface temperature anomaly data for the region of interest at a plurality of depths. The method further includes regressing the obtained surface temperature anomaly data and surface height anomaly data for the region of interest with the obtained subsurface temperature anomaly data for the plurality of depths to generate regression coefficients, estimating a subsurface temperature at one or more other depths for the region of interest based on the generated regression coefficients and outputting the estimated subsurface temperature at the one or more other depths. Using the estimated subsurface temperature, signal propagation times and trajectories of marine life in the body of water are determined.

Verification and transfer of thermal pollution model. Volume 3: Verification of 3-dimensional rigid-lid model

NASA Technical Reports Server (NTRS)

Lee, S. S.; Sengupta, S.; Nwadike, E. V.; Sinha, S. K.

1982-01-01

The six-volume report: describes the theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model, includes model verification at two sites, and provides a separate user's manual for each model. The 3-D model has two forms: free surface and rigid lid. The former, verified at Anclote Anchorage (FL), allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth; e.g., estuaries and coastal regions. The latter, verified at Lake Keowee (SC), is suited for small surface wave heights compared to depth (e.g., natural or man-made inland lakes) because surface elevation has been removed as a parameter. These models allow computation of time-dependent velocity and temperature fields for given initial conditions and time-varying boundary conditions. The free-surface model also provides surface height variations with time.

Investigation of Hall Effect Thruster Channel Wall Erosion Mechanisms

DTIC Science & Technology

2016-08-02

pretest height and laser image, c, d) post - test height and laser image. On all the pre-roughened samples, a cell-pattern developed from the random...7.8: Pre and post - test sample microscopy: Fused silica sample SA6 (loaded), 20x, center of exposed surface, a, b) pretest height and laser image, c, d...stress on the surface features developed during plasma erosion. The experiment is also designed specifically to test the SRH. A test fixture is

Program Merges SAR Data on Terrain and Vegetation Heights

NASA Technical Reports Server (NTRS)

Siqueira, Paul; Hensley, Scott; Rodriguez, Ernesto; Simard, Marc

2007-01-01

X/P Merge is a computer program that estimates ground-surface elevations and vegetation heights from multiple sets of data acquired by the GeoSAR instrument [a terrain-mapping synthetic-aperture radar (SAR) system that operates in the X and bands]. X/P Merge software combines data from X- and P-band digital elevation models, SAR backscatter magnitudes, and interferometric correlation magnitudes into a simplified set of output topographical maps of ground-surface elevation and tree height.

How important is getting the land surface energy exchange correct in WRF for wind energy forecasting?

NASA Astrophysics Data System (ADS)

Wharton, S.; Simpson, M.; Osuna, J. L.; Newman, J. F.; Biraud, S.

2013-12-01

Wind power forecasting is plagued with difficulties in accurately predicting the occurrence and intensity of atmospheric conditions at the heights spanned by industrial-scale turbines (~ 40 to 200 m above ground level). Better simulation of the relevant physics would enable operational practices such as integration of large fractions of wind power into power grids, scheduling maintenance on wind energy facilities, and deciding design criteria based on complex loads for next-generation turbines and siting. Accurately simulating the surface energy processes in numerical models may be critically important for wind energy forecasting as energy exchange at the surface strongly drives atmospheric mixing (i.e., stability) in the lower layers of the planetary boundary layer (PBL), which in turn largely determines wind shear and turbulence at heights found in the turbine rotor-disk. We hypothesize that simulating accurate a surface-atmosphere energy coupling should lead to more accurate predictions of wind speed and turbulence at heights within the turbine rotor-disk. Here, we tested 10 different land surface model configurations in the Weather Research and Forecasting (WRF) model including Noah, Noah-MP, SSiB, Pleim-Xiu, RUC, and others to evaluate (1) the accuracy of simulated surface energy fluxes to flux tower measurements, (2) the accuracy of forecasted wind speeds to observations at rotor-disk heights, and (3) the sensitivity of forecasting hub-height rotor disk wind speed to the choice of land surface model. WRF was run for four, two-week periods covering both summer and winter periods over the Southern Great Plains ARM site in Oklahoma. Continuous measurements of surface energy fluxes and lidar-based wind speed, direction and turbulence were also available. The SGP ARM site provided an ideal location for this evaluation as it centrally located in the wind-rich Great Plains and multi-MW wind farms are rapidly expanding in the area. We found significant differences in simulated wind speeds at rotor-disk heights from WRF which indicated, in part, the sensitivity of lower PBL winds to surface energy exchange. We also found significant differences in energy partitioning between sensible heat and latent energy depending on choice of land surface model. Overall, the most consistent, accurate model results were produced using Noah-MP. Noah-MP was most accurate at simulating energy fluxes and wind shear. Hub-height wind speed, however, was predicted with most accuracy with Pleim-Xiu. This suggests that simulating wind shear in the surface layer is consistent with accurately simulating surface energy exchange while the exact magnitudes of wind speed may be more strongly influenced by the PBL dynamics. As the nation is working towards a 20% wind energy goal by 2030, increasing the accuracy of wind forecasting at rotor-disk heights becomes more important considering that utilities require wind farms to estimate their power generation 24 to 36 hours ahead and face penalties for inaccuracies in those forecasts.

Corrections for the effects of significant wave height and attitude on Geosat radar altimeter measurements

NASA Technical Reports Server (NTRS)

Hayne, G. S.; Hancock, D. W., III

1990-01-01

Range estimates from a radar altimeter have biases which are a function of the significant wave height (SWH) and the satellite attitude angle (AA). Based on results of prelaunch Geosat modeling and simulation, a correction for SWH and AA was already applied to the sea-surface height estimates from Geosat's production data processing. By fitting a detailed model radar return waveform to Geosat waveform sampler data, it is possible to provide independent estimates of the height bias, the SWH, and the AA. The waveform fitting has been carried out for 10-sec averages of Geosat waveform sampler data over a wide range of SWH and AA values. The results confirm that Geosat sea-surface-height correction is good to well within the original dm-level specification, but that an additional height correction can be made at the level of several cm.

Radiant heat loss, an unexploited path for heat stress reduction in shaded cattle.

PubMed

Berman, A; Horovitz, T

2012-06-01

Reducing thermal radiation on shaded animals reduces heat stress independently of other means of stress relief. Radiant heat exchange was estimated as a function of climate, shade structure, and animal density. Body surface portion exposed to radiant sources in shaded environments was determined by geometrical relations to determine angles of view of radiation sources (roof underside, sky, sun-exposed ground, shaded ground) on the animal's surface. The relative representation of environment radiation sources on the body surface was determined. Animal thermal radiation balance was derived from radiant heat gained from radiation sources (including surrounding animals) and that lost from the animal surface. The animal environment was assumed to have different shade dimensions and temperatures. These were summed to the radiant heat balance of the cow. The data formed served to estimate the effect of changes in intensity of radiation sources, roof and shaded surface dimensions, and animal density on radiant heat balance (Rbal) of cattle. Roof height effect was expressed by effect of roof temperature on Rbal. Roof underside temperature (35 to 75°C) effect on Rbal was reduced by roof height. If roof height were 4m, an increase in its underside temperature from 35 to 75°C would increase mean Rbal from -63 to -2 W·m⁻², whereas if roof height were 10 m, Rbal would only increase from -99 to -88 W·m⁻². A hot ground temperature increase from 35 to 65°C reduced mean Rbal heat loss from -45 to 3 W·m⁻². Increasing the surface of the shaded area had only a minor effect on Rbal and on the effect of hot ground on Rbal. Increasing shade roof height reduced the effect of roof temperature on Rbal to minor levels when height was > 8m. Increasing the roof height from 4 to 10 m decreased Rbal from -32 to -94 W·m⁻². Increasing indirect radiation from 100 to 500 W·m⁻² was associated with an increase in Rbal from -135 to +23 W·m⁻². Their combined effects were lower Rbal with increasing roof height and a reduction in rate of decrease with increasing level of indirect radiation. Roof height as an Rbal attenuator declined with increasing indirect radiation level. The latter factor might be reduced by lowering roof surface radiation absorption and through roof heat transfer, as well as by use of shade structure elements to reduce indirect radiation in the shaded area. Radiant heat from the cow body surface may be reduced by lower cow density. Radiant heat attenuation may thus further elevate animal productivity in warm climates, with no associated operation costs. Copyright © 2012 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Implementation of spaceborne lidar-retrieved canopy height in the WRF model

NASA Astrophysics Data System (ADS)

Lee, Junhong; Hong, Jinkyu

2016-06-01

Canopy height is closely related to biomass and aerodynamic properties, which regulate turbulent transfer of energy and mass at the soil-vegetation-atmosphere continuum. However, this key information has been prescribed as a constant value in a fixed plant functional type in atmospheric models. This paper is the first to report impacts of using realistic forest canopy height, retrieved from spaceborne lidar, on regional climate simulation by using the canopy height data in the Weather Research and Forecasting (WRF) model's land surface model. Numerical simulations were conducted over the Amazon Basin during summer season. Over this region, the lidar-retrieved canopy heights were higher than the default values used in the WRF, which are dependent only on plant functional type. By modifying roughness length and zero-plane displacement height, the change of canopy height resulted in changes in surface energy balance by regulating aerodynamic conductances and vertical temperature gradient, thus modifying the lifting condensation level and equivalent potential temperature in the atmospheric boundary layer. Our analysis also showed that the WRF model better reproduced the observed precipitation when lidar-retrieved canopy height was used over the Amazon Basin.

Ice nucleation on nanotextured surfaces: the influence of surface fraction, pillar height and wetting states.

PubMed

Metya, Atanu K; Singh, Jayant K; Müller-Plathe, Florian

2016-09-29

In this work, we address the nucleation behavior of a supercooled monatomic cylindrical water droplet on nanoscale textured surfaces using molecular dynamics simulations. The ice nucleation rate at 203 K on graphite based textured surfaces with nanoscale roughness is evaluated using the mean fast-passage time method. The simulation results show that the nucleation rate depends on the surface fraction as well as the wetting states. The nucleation rate enhances with increasing surface fraction for water in the Cassie-Baxter state, while contrary behavior is observed for the case of Wenzel state. Based on the spatial histogram distribution of ice formation, we observed two pathways for ice nucleation. Heterogeneous nucleation is observed at a high surface fraction. However, the probability of homogeneous ice nucleation events increases with decreasing surface fraction. We further investigate the role of the nanopillar height in ice nucleation. The nucleation rate is enhanced with increasing nanopillar height. This is attributed to the enhanced contact area with increasing nanopillar height and the shift in nucleation events towards the three-phase contact line associated with the nanotextured surface. The ice-surface work of adhesion for the Wenzel state is found to be 1-2 times higher than that in the Cassie-Baxter state. Furthermore, the work of adhesion of ice in the Wenzel state is found to be linearly dependent on the contour length of the droplet, which is in line with that reported for liquid droplets.

Threshold Determination for Local Instantaneous Sea Surface Height Derivation with Icebridge Data in Beaufort Sea

NASA Astrophysics Data System (ADS)

Zhu, C.; Zhang, S.; Xiao, F.; Li, J.; Yuan, L.; Zhang, Y.; Zhu, T.

2018-05-01

The NASA Operation IceBridge (OIB) mission is the largest program in the Earth's polar remote sensing science observation project currently, initiated in 2009, which collects airborne remote sensing measurements to bridge the gap between NASA's ICESat and the upcoming ICESat-2 mission. This paper develop an improved method that optimizing the selection method of Digital Mapping System (DMS) image and using the optimal threshold obtained by experiments in Beaufort Sea to calculate the local instantaneous sea surface height in this area. The optimal threshold determined by comparing manual selection with the lowest (Airborne Topographic Mapper) ATM L1B elevation threshold of 2 %, 1 %, 0.5 %, 0.2 %, 0.1 % and 0.05 % in A, B, C sections, the mean of mean difference are 0.166 m, 0.124 m, 0.083 m, 0.018 m, 0.002 m and -0.034 m. Our study shows the lowest L1B data of 0.1 % is the optimal threshold. The optimal threshold and manual selections are also used to calculate the instantaneous sea surface height over images with leads, we find that improved methods has closer agreement with those from L1B manual selections. For these images without leads, the local instantaneous sea surface height estimated by using the linear equations between distance and sea surface height calculated over images with leads.

Influence of the height of the external hexagon and surface treatment on fatigue life of commercially pure titanium dental implants.

PubMed

Gil, Francisco Javier; Aparicio, Conrado; Manero, Jose M; Padros, Alejandro

2009-01-01

This study evaluated the effect of external hexagon height and commonly applied surface treatments on the fatigue life of titanium dental implants. Electropolished commercially pure titanium dental implants (seven implants per group) with three different external hexagon heights (0.6, 1.2, and 1.8 mm) and implants with the highest external hexagon height (1.8 mm) and different surface treatments (electropolishing, grit blasting with aluminium oxide, and acid etching with sulfuric acid) were tested to evaluate their mechanical fatigue life. To do so, 10-Hz triangular flexural load cycles were applied at 37 degrees C in artificial saliva, and the number of load cycles until implant fracture was determined. Tolerances of the hexagon/abutment fit and implant surface roughness were analyzed by scanning electron microscopy and light interferometry. Transmission electron microscopy and electron diffraction analyses of titanium hydrides were performed. First, the fatigue life of implants with the highest hexagon (8,683 +/- 978 load cycles) was more than double that of the implants with the shortest hexagons (3,654 +/- 789 load cycles) (P < .02). Second, the grit-blasted implants had the longest fatigue life of the tested materials (21,393 +/- 2,356 load cycles), which was significantly greater than that of the other surfaces (P < .001). The compressive surface residual stresses induced when blasting titanium are responsible for this superior mechanical response. Third, precipitation of titanium hydrides in grain boundaries of titanium caused by hydrogen adsorption from the acid solution deteriorates the fatigue life of acid-etched titanium dental implants. These implants had the shortest fatigue life (P < .05). The fatigue life of threaded root-form dental implants varies with the height of the external hexagon and/or the surface treatment of the implant. An external hexagon height of 1.8 mm and/or a blasting treatment appear to significantly increase fatigue life of dental implants.

Land Surface Properties near Terra Nova Bay, East Antarctica, Analyzed by Time-series Height, Coherence and Amplitude Maps Derived from COSMO-SkyMed One-day Tandem Pairs

NASA Astrophysics Data System (ADS)

Ji, Y.; Han, H.; Lee, H.

2014-12-01

Analysis of the surface properties of Antarctica is very important to study the change of environment and climate in the polar region. Synthetic aperture radar (SAR) has been widely used to study Antarctic surface properties because it is independent of sun altitude and atmospheric conditions. Interferometric SAR (InSAR) observes surface topography and deformation, by calculating the phase differences between two or more SAR images obtained over same area. InSAR technique can be used for height mapping in stable areas with a few meter accuracy. However, the InSAR-derived height map can have errors if the phase differences due to surface deformation or change of the scattering center by microwave penetration into snow are misinterpreted as the elevation. In this study, we generated the height maps around Terra Nova Bay in East Antarctica from 13 COSMO-SkyMed one-day tandem InSAR pairs obtained from December 2010 to January 2012. By analyzing the height maps averaged over the 13 interferograms and its standard deviation (STD) map, we could classify the surface types into glacier, mountains and basin areas covered with snow. The mountain areas showed very small STD because its surface property is unchanged with time, except for the small STD values caused by the errors from the unwrapping processing, satellite orbit or atmospheric phase distortion. Over the basin areas, however, the STD of the height was much larger than the mountain area due to the variation of scattering center either from the change in surface property such as snowfall and sublimation or by the surface displacement of snow mass that are too slow. A year-long constant motion of such slow-creeping snow body was positively identified by its linear relationship between the misinterpreted elevation and the baseline perpendicular component of InSAR pair. Analysis of time-series coherence maps and amplitude maps have also contributed to clarify the surface properties and its changes due to various environmental factors such as snow fall, wind, sublimation, and the freezing-thawing processes in this Antarctic land surface. Acknowledgement - This research was supported by National Research Foundation of Korea through NRF-2013R1A1A2008062 and NRF-2013M1A3A3A02041853.

Peregrine System User Basics | High-Performance Computing | NREL

Science.gov Websites

peregrine.hpc.nrel.gov or to one of the login nodes. Example commands to access Peregrine from a Linux or Mac OS X system Code Example Create a file called hello.F90 containing the following code: program hello write(6 information by enclosing it in brackets < >. For example: $ ssh -Y

Running STAR-CCM+ Software on the Peregrine System | High-Performance

Science.gov Websites

/bin/lmutil lmstat -c 1999@wind-lms.nrel.gov -a module load star-ccm export TMPDIR="/scratch/$USER + -power -rsh "ssh -oStrictHostKeyChecking=no" -machinefile nodelist -np $(($nodes*$cores , type the commands from the SLURM script and make sure the job runs: module load star-ccm export TMPDIR

Characterization and expression analysis of two cDNAs encoding Xa1 and oxysterol binding proteins in sorghum (Sorghum bicolor)

USDA-ARS?s Scientific Manuscript database

Using suppression subtractive hybridization (SSH) and subsequent microarray analysis, expression profiles of sorghum genes responsive to greenbug phloem-feeding were obtained and identified. Among the profiles, two cDNAs designated to MM73 and MM95 were identified to encode Xa1 (Xa1) and oxysterol ...

A design of PAL with astigmatism

NASA Astrophysics Data System (ADS)

Wei, Yefei; Xiang, Huazhong; Zhu, Tianfeng; Chen, Jiabi

2015-08-01

Progressive addition lens (PAL) is designed for those who suffer from myopia and presbyopia to have a clear vision from a far distance to a nearby distance. Additionally there are many people that also suffer from astigmatism and need to be corrected. The cylinder power can't be simply added to the diopter of the PAL directly, because the diopter of the PAL needs to be changed smoothly. A methods has been proposed in this article to solve the problem, the freeform surface height of a PAL without astigmatism and the cylindrical lens surface height for the correction of astigmatism are calculated separately. The both two surface heights were added together, then the final surface is produced and shown with the both properties of PALs and cylindrical lenses used to correct the astigmatism.

Theoretical model of droplet wettability on a low-surface-energy solid under the influence of gravity.

PubMed

Yonemoto, Yukihiro; Kunugi, Tomoaki

2014-01-01

The wettability of droplets on a low surface energy solid is evaluated experimentally and theoretically. Water-ethanol binary mixture drops of several volumes are used. In the experiment, the droplet radius, height, and contact angle are measured. Analytical equations are derived that incorporate the effect of gravity for the relationships between the droplet radius and height, radius and contact angle, and radius and liquid surface energy. All the analytical equations display good agreement with the experimental data. It is found that the fundamental wetting behavior of the droplet on the low surface energy solid can be predicted by our model which gives geometrical information of the droplet such as the contact angle, droplet radius, and height from physical values of liquid and solid.

14 CFR 77.17 - Obstruction standards.

Code of Federal Regulations, 2013 CFR

2013-01-01

... proportion of 100 feet for each additional nautical mile from the airport up to a maximum of 499 feet. (3) A... greater height than any of the following heights or surfaces: (1) A height of 499 feet AGL at the site of the object. (2) A height that is 200 feet AGL, or above the established airport elevation, whichever...

33 CFR 177.07 - Other unsafe conditions.

Code of Federal Regulations, 2012 CFR

2012-07-01

...) The wave height within the Regulated Boating Area is 4 feet or greater; or (2) The wave height within the Regulated Boating Area is equal to or greater than the wave height determined by the formula L/10... from the lowest point along the upper strake edge to the surface of the water. W=Maximum wave height in...

33 CFR 177.07 - Other unsafe conditions.

Code of Federal Regulations, 2011 CFR

2011-07-01

...) The wave height within the Regulated Boating Area is 4 feet or greater; or (2) The wave height within the Regulated Boating Area is equal to or greater than the wave height determined by the formula L/10... from the lowest point along the upper strake edge to the surface of the water. W=Maximum wave height in...

33 CFR 177.07 - Other unsafe conditions.

Code of Federal Regulations, 2013 CFR

2013-07-01

...) The wave height within the Regulated Boating Area is 4 feet or greater; or (2) The wave height within the Regulated Boating Area is equal to or greater than the wave height determined by the formula L/10... from the lowest point along the upper strake edge to the surface of the water. W=Maximum wave height in...

Lava flow topographic measurements for radar data interpretation

NASA Technical Reports Server (NTRS)

Campbell, Bruce A.; Garvin, James B.

1993-01-01

Topographic profiles at 25- and 5-cm horizontal resolution for three sites along a lava flow on Kilauea Volcano are presented, and these data are used to illustrate techniques for surface roughness analysis. Height and slope distributions and the height autocorrelation function are evaluated as a function of varying lowpass filter wavelength for the 25-cm data. Rms slopes are found to increase rapidly with decreasing topographic scale and are typically much higher than those found by modeling of Magellan altimeter data for Venus. A more robust description of the surface roughness appears to be the ratio of rms height to surface height correlation length. For all three sites this parameter falls within the range of values typically found from model fits to Magellan altimeter waveforms. The 5-cm profile data are used to estimate the effect of small-scale roughness on quasi-specular scattering.

Kinetic Roughening and Energetics of Tetragonal Lysozyme Crystal Growth: A Preliminary Atomic Force Microscopy Investigation

NASA Technical Reports Server (NTRS)

Gorti, Sridhar; Forsythe, Elizabeth L.; Pusey, Marc L.

2004-01-01

We examined particulars of crystal growth from measurements obtained at both microscopic and molecular levels. The crystal growth measurements performed at the microscopic level are well characterized by a model that balances the flux of macromolecules towards the crystal surface with the flux of the crystal surface. Numerical evaluation of model with measurements of crystal growth, in time, provided accurate estimates for the average growth velocities. Growth velocities thus obtained were also interpreted using well-established phenomenological theories. Moreover, we find that microscopic measurements of growth velocity measurements obtained as a function of temperature best characterizes changes in crystal growth modes, when present. We also examined the possibility of detecting a change in crystal growth modes at the molecular level using atomic force microscopy, AFM. From preliminary AFM measurements performed at various supersaturations, we find that magnitude of surface height fluctuations, h(x), increases with supersaturation. Further examination of surface height fluctuations using methods established for fluctuation spectroscopy also enabled the discovery of the existence of a characteristic length, c, which may possibly determine the mode of crystal growth. Although the results are preliminary, we establish the non- critical divergence of 5 and the root-mean-square (rms) magnitude of height-height fluctuations as the kinetic roughening transition temperatures are approached. Moreover, we also examine approximate models for interpreting the non-critical behavior of both 6 and rms magnitude of height-height fluctuations, as the solution supersaturation is increased towards the kinetic roughening supersaturation.

Characterization of relief printing

NASA Astrophysics Data System (ADS)

Liu, Xing; Chen, Lin; Ortiz-Segovia, Maria-Valezzka; Ferwerda, James; Allebach, Jan

2014-03-01

Relief printing technology developed by Océ allows the superposition of several layers of colorant on different types of media which creates a variation of the surface height defined by the input to the printer. Evaluating the reproduction accuracy of distinct surface characteristics is of great importance to the application of the relief printing system. Therefore, it is necessary to develop quality metrics to evaluate the relief process. In this paper, we focus on the third dimension of relief printing, i.e. height information. To achieve this goal, we define metrics and develop models that aim to evaluate relief prints in two aspects: overall fidelity and surface finish. To characterize the overall fidelity, three metrics are calculated: Modulation Transfer Function (MTF), difference and root-mean-squared error (RMSE) between the input height map and scanned height map, and print surface angle accuracy. For the surface finish property, we measure the surface roughness, generate surface normal maps and develop a light reflection model that serves as a simulation of the differences between ideal prints and real prints that may be perceived by human observers. Three sets of test targets are designed and printed by the Océ relief printer prototypes for the calculation of the above metrics: (i) twisted target, (ii) sinusoidal wave target, and (iii) ramp target. The results provide quantitative evaluations of the printing quality in the third dimension, and demonstrate that the height of relief prints is reproduced accurately with respect to the input design. The factors that affect the printing quality include: printing direction, frequency and amplitude of the input signal, shape of relief prints. Besides the above factors, there are two additional aspects that influence the viewing experience of relief prints: lighting condition and viewing angle.

Surface-Height Determination of Crevassed Glaciers-Mathematical Principles of an Autoadaptive Density-Dimension Algorithm and Validation Using ICESat-2 Simulator (SIMPL) Data

NASA Technical Reports Server (NTRS)

Herzfeld, Ute C.; Trantow, Thomas M.; Harding, David; Dabney, Philip W.

2017-01-01

Glacial acceleration is a main source of uncertainty in sea-level-change assessment. Measurement of ice-surface heights with a spatial and temporal resolution that not only allows elevation-change calculation, but also captures ice-surface morphology and its changes is required to aid in investigations of the geophysical processes associated with glacial acceleration.The Advanced Topographic Laser Altimeter System aboard NASAs future ICESat-2 Mission (launch 2017) will implement multibeam micropulse photon-counting lidar altimetry aimed at measuring ice-surface heights at 0.7-m along-track spacing. The instrument is designed to resolve spatial and temporal variability of rapidly changing glaciers and ice sheets and the Arctic sea ice. The new technology requires the development of a new mathematical algorithm for the retrieval of height information.We introduce the density-dimension algorithm (DDA) that utilizes the radial basis function to calculate a weighted density as a form of data aggregation in the photon cloud and considers density an additional dimension as an aid in auto-adaptive threshold determination. The auto-adaptive capability of the algorithm is necessary to separate returns from noise and signal photons under changing environmental conditions. The algorithm is evaluated using data collected with an ICESat-2 simulator instrument, the Slope Imaging Multi-polarization Photon-counting Lidar, over the heavily crevassed Giesecke Braer in Northwestern Greenland in summer 2015. Results demonstrate that ICESat-2 may be expected to provide ice-surface height measurements over crevassed glaciers and other complex ice surfaces. The DDA is generally applicable for the analysis of airborne and spaceborne micropulse photon-counting lidar data over complex and simple surfaces.

Inferring Discharge at River Mouths from Water Surface Height Measurements

NASA Astrophysics Data System (ADS)

Branch, R.; Horner-Devine, A.; Chickadel, C. C.

2016-02-01

Numerical model results suggest that a relationship exists between river discharge and surface height anomalies near the mouth of rivers, which presents an opportunity to use satellite elevation data to measure discharge remotely. Here we investigate whether such a relationship can be observed in the field using airborne lidar data at the mouth of the Columbia River. Airborne Lidar data were used because current NASA altimeter data does not have high enough spatial resolution to image surface elevation along a river. NASA's Surface Water and Ocean Topography, SWOT, sensor is planned to have a spatial resolution of less than 100 m and maximum height precision of 1 cm. The magnitude and temporal duration of the elevation signal found in the lidar data will be used to determine if SWOT will have the resolution and precision capabilities to measure discharge from space. Lidar data were acquired during a range of tidal conditions and discharge rates from May through September of 2013. Our results suggest that there is a measurable surface height anomaly at the river mouth during part of the tidal cycle. A 0.7 m surface depression was found during ebb tide and a uniform surface tilt was found at slack tide. The variation of the anomaly over the tidal period presents a challenge for decoupling the tidal component from that due to the discharge.

Use of coastal altimeter and tide gauge data for a seamless land-sea vertical datum in Taiwan

NASA Astrophysics Data System (ADS)

Yen-Ti, C.; Hwang, C.

2017-12-01

Conventional topographic and hydrographic mappings use two separate reference surfaces, called orthometric datum (TWVD2001 in Taiwan) and chart datum. In Taiwan, land elevations are heights tied to a leveling control network with its zero height at the mean sea surface of Keelung Harbor (realized by the height of Benchmark K999). Ocean depths are counted from the lowest tidal surface defined by tidal measurements near the sites of depth measurements. This paper usesa new method to construct a unified vertical datum for land elevations and ocean depths around Taiwan. First, we determine an optimal mean sea surface model (MSSHM) using refined offshore altimeter data. Then, the ellipsoidal heights of the mean sea levels at 36 tide gauges around Taiwan are determined using GPS measurements at their nearby benchmarks, and are then combined with the altimeter-derived MSSHM to generate a final MSSHM that has a smooth transition from land to sea. We also construct an improved ocean tide model to obtain various tidal surfaces. Using the latest land, shipborne, airborne and altimeter-derived gravity data, we construct a hybrid geoid model to define a vertical datum on land. The final MSSHM is the zero surface that defines ocean tidal heights and lowest tidal values in a ellipsoidal system that is fully consistent with the geodetic system of GNSS. The use of the MSSHM and the hybrid geoid model enables a seamless connection to combine or compare coastal land and sea elevations from a wide range of sources.

Surface correlations of hydrodynamic drag for transitionally rough engineering surfaces

NASA Astrophysics Data System (ADS)

Thakkar, Manan; Busse, Angela; Sandham, Neil

2017-02-01

Rough surfaces are usually characterised by a single equivalent sand-grain roughness height scale that typically needs to be determined from laboratory experiments. Recently, this method has been complemented by a direct numerical simulation approach, whereby representative surfaces can be scanned and the roughness effects computed over a range of Reynolds number. This development raises the prospect over the coming years of having enough data for different types of rough surfaces to be able to relate surface characteristics to roughness effects, such as the roughness function that quantifies the downward displacement of the logarithmic law of the wall. In the present contribution, we use simulation data for 17 irregular surfaces at the same friction Reynolds number, for which they are in the transitionally rough regime. All surfaces are scaled to the same physical roughness height. Mean streamwise velocity profiles show a wide range of roughness function values, while the velocity defect profiles show a good collapse. Profile peaks of the turbulent kinetic energy also vary depending on the surface. We then consider which surface properties are important and how new properties can be incorporated into an empirical model, the accuracy of which can then be tested. Optimised models with several roughness parameters are systematically developed for the roughness function and profile peak turbulent kinetic energy. In determining the roughness function, besides the known parameters of solidity (or frontal area ratio) and skewness, it is shown that the streamwise correlation length and the root-mean-square roughness height are also significant. The peak turbulent kinetic energy is determined by the skewness and root-mean-square roughness height, along with the mean forward-facing surface angle and spanwise effective slope. The results suggest feasibility of relating rough-wall flow properties (throughout the range from hydrodynamically smooth to fully rough) to surface parameters.

Characteristics of surface roughness associated with leading edge ice accretion

NASA Technical Reports Server (NTRS)

Shin, Jaiwon

1994-01-01

Detailed size measurements of surface roughness associated with leading edge ice accretions are presented to provide information on characteristics of roughness and trends of roughness development with various icing parameters. Data was obtained from icing tests conducted in the Icing Research Tunnel (IRT) at NASA Lewis Research Center (LeRC) using a NACA 0012 airfoil. Measurements include diameters, heights, and spacing of roughness elements along with chordwise icing limits. Results confirm the existence of smooth and rough ice zones and that the boundary between the two zones (surface roughness transition region) moves upstream towards stagnation region with time. The height of roughness grows as the air temperature and the liquid water content increase, however, the airspeed has little effect on the roughness height. Results also show that the roughness in the surface roughness transition region grows during a very early stage of accretion but reaches a critical height and then remains fairly constant. Results also indicate that a uniformly distributed roughness model is only valid at a very initial stage of the ice accretion process.

Impact of implementation of spaceborne lidar-retrieved canopy height in the WRF model

NASA Astrophysics Data System (ADS)

Lee, Junhong; Hong, Jinkyu

2017-04-01

Canopy height is closely related to biomass and aerodynamic properties, which regulate turbulent transfer of energy and mass at the soil-vegetation-atmosphere continuum. However, this key information has been prescribed as a constant value in a fixed plant functional type in atmospheric models. This presentation reports impacts of using realistic forest canopy height, retrieved from spaceborne LiDAR, on regional climate simulation in the Weather Research and Forecasting (WRF) model's land surface model. Numerical simulations were conducted over the Amazon Basin and East Asia during summer season. Over these regions, the LiDAR-retrieved canopy heights were higher than the default values used in the WRF,which are dependent only on plant functional type. By modifying roughness length and zero-plane displacement height, the change of canopy height resulted in changes in surface energy balance by regulating aerodynamic conductances and vertical temperature gradient, thus modifying the lifting condensation level and equivalent potential temperature in the atmospheric boundary layer. Our analysis also showed that the WRF model better reproduced the observed precipitation when LiDAR-retrieved canopy height was used over the Amazon Basin.

Cassini Ring Plane Crossings: Hypervelocity Impact Risks to Sun Sensor Assemblies

NASA Technical Reports Server (NTRS)

Lee, Allan Y.

2016-01-01

For both F/G and D-ring crossings: Probability of a penetration damage of the SSH (Sun Sensor Head) window glass is very low; Optical attenuation due to craters on the surface of the window glass caused by direct HVI (Hyper-Velocity Impact) by dust particle is estimated to be less than 1 percent; Optical attenuation due to secondary debris cloud generated by the disintegrated ring dust particles is estimated to be less than 1 percent. To better manage the Sun sensor damage risk during selected proximal orbit crossings, it is highly desirable to follow the contingency procedures mentioned in Section VII of the paper: Details of this contingency procedure are given in the paper entitled "Cassini Operational Sun Sensor Risk Management During Proximal Orbit Saturn Ring Plane Crossings" authored by David M. Bates. Based on results of risk analyses documented in this work and contingency planning work described in the paper mentioned above, we judge that the proximal orbit campaign will be safe from the viewpoint of dust HVI hazard.

Error sources in the retrieval of aerosol information over bright surfaces from satellite measurements in the oxygen A band

NASA Astrophysics Data System (ADS)

Nanda, Swadhin; de Graaf, Martin; Sneep, Maarten; de Haan, Johan F.; Stammes, Piet; Sanders, Abram F. J.; Tuinder, Olaf; Pepijn Veefkind, J.; Levelt, Pieternel F.

2018-01-01

Retrieving aerosol optical thickness and aerosol layer height over a bright surface from measured top-of-atmosphere reflectance spectrum in the oxygen A band is known to be challenging, often resulting in large errors. In certain atmospheric conditions and viewing geometries, a loss of sensitivity to aerosol optical thickness has been reported in the literature. This loss of sensitivity has been attributed to a phenomenon known as critical surface albedo regime, which is a range of surface albedos for which the top-of-atmosphere reflectance has minimal sensitivity to aerosol optical thickness. This paper extends the concept of critical surface albedo for aerosol layer height retrievals in the oxygen A band, and discusses its implications. The underlying physics are introduced by analysing the top-of-atmosphere reflectance spectrum as a sum of atmospheric path contribution and surface contribution, obtained using a radiative transfer model. Furthermore, error analysis of an aerosol layer height retrieval algorithm is conducted over dark and bright surfaces to show the dependence on surface reflectance. The analysis shows that the derivative with respect to aerosol layer height of the atmospheric path contribution to the top-of-atmosphere reflectance is opposite in sign to that of the surface contribution - an increase in surface brightness results in a decrease in information content. In the case of aerosol optical thickness, these derivatives are anti-correlated, leading to large retrieval errors in high surface albedo regimes. The consequence of this anti-correlation is demonstrated with measured spectra in the oxygen A band from the GOME-2 instrument on board the Metop-A satellite over the 2010 Russian wildfires incident.

Coastal Application of Altimetric Measurement using Wideband Signals of Opportunity Reflectometry

NASA Astrophysics Data System (ADS)

Shah, R.; Garrison, J. L.; Li, Z.; Ho, S. C.

2017-12-01

The majority of the world's population live in coastal regions, making this region subject to growing stress from resource exploitation, marine operations, and other human activities. The coastal ocean is also a highly dynamic region driven by the interfaces between land, sea, and air. Understanding the evolution over short temporal and small spatial scales of the coastal ocean environment is a complex and long-standing challenge. Over the last decade, it has been well established that submesoscale processes are highly energetic and have a temporal scale of hours at a 10-km of spatial scale. These processes fundamentally impact ocean dynamics, biological processes, trace gas mixing and transport. Satellite altimeters, which have played a significant role in mapping the variability of the Earth's open ocean, have known limitations in coastal areas resulting from land contamination and rapid variations due to tides and atmospheric effects. This study will evaluate the potential application of an emerging remote sensing technology (Signals of Opportunity Reflectometry: SoOp-R) to the problem of resolving submesoscale processes in the coastal regions, with spatial scales on the order of 10 km and temporal scales on the order of 1 day. SoOp-R reutilizes existing powerful communication satellite transmissions as illumination sources in a bistatic radar configuration. A number of direct broadcast satellites (DBS), currently operating in geostationary orbit, occupy very large bandwidth (400-500 MHz) spectral allocations in the Ku- and Ka- bands. Theoretically, sea surface height (SSH) can be estimated by measuring the reflected path delay of these signals with very high precision (on the order of 4-5 cm) due to the large bandwidth and high signal- to-noise ratio. SoOp-R instruments are passive, requiring only low-power receivers which could be launched on constellations of small satellites. The distribution of altimetry measurements, combined with the off-nadir geometry, will enable high temporal coverage. This study will assess the potential of resolving coastal processes using wideband SoOp-R. Theoretical predictions will be compared to results from an ongoing experimental campaign and evaluated against science-driven requirements.

From SYNOP to AMOC: Stirring by deep cyclones and the evolution of Denmark Strait Overflow Water observed at Line W

NASA Astrophysics Data System (ADS)

Andres, M.; Toole, J. M.; Torres, D. J.; Smethie, W. M., Jr.; Joyce, T. M.; Curry, R. G.

2016-02-01

Shipboard velocity and property data from 18 transects across the North Atlantic Deep Western Boundary Current (DWBC) near 40˚N are analyzed to study the evolution of the Denmark Strait Overflow Water (DSOW) component of the DWBC and its mixing with the interior. The transects were made between 1994 and 2014 and lie along Line W, which reaches from the continental shelf south of New England to Bermuda. Measurements comprise velocity from lowered acoustic Doppler current profilers (LADCPs), CTD profiles, and trace gas chlorofluorocarbon (CFC) concentrations from bottle samples at discrete depths at 26 regular stations or a subset of these stations. In each transect, DSOW exhibits a distinct CFC concentration maximum in the abyssal ocean (> 3000 m depth) along the sloped western boundary. Sea surface height (SSH) maps from satellite altimetry indicate that quasi-stationary meander troughs of the Gulf Stream path in the upper ocean were present at Line W during 5 of the 18 sections. For these 5 sections, the LADCP velocity sections suggest the upper ocean trough is accompanied by a large cyclone in the deep ocean in the DSOW density layer. The occurrence of deep cyclones in conjunction with Gulf Stream troughs as inferred from the LADCP sections along Line W is consistent with previous observations (from 1988 to 1990) in the region from a moored array in the Synoptic Ocean Prediction (SYNOP) experiment. The SYNOP array suggested deep cyclones are present here about 35% of the time. The composite velocity section produced from the 5 Line W transects sampling through a Gulf Stream trough suggests that a typical cyclone reaches swirl speeds of greater than 30 cm/s at 3400 m depth and has a radius (distance between the center and the maximum velocity) of 75 km. The tracer data suggest that these cyclones affect not only the deep velocity structure along Line W, but also provide a mechanism for water exchange between the DWBC and the interior.

Workload-Driven Design and Evaluation of Large-Scale Data-Centric Systems

DTIC Science & Technology

2012-05-09

in the batch zone in and out of a low-power state, e.g., sending a “ hibernate ” command via ssh and using Wake-on-LAN or related technologies [85]. If...parameter values for experiments with stand-alone jobs. The mapred.child.java.opts parameter sets the maximum virtual memory of the Java child pro- cesses

Using ANSYS Fluent on the Peregrine System | High-Performance Computing |

Science.gov Websites

two ways to run ANSYS CFD interactively on NREL HPC systems. When graphics rendering is not a critical when used as above is quite low (e.g., windows take a long time to come up). For small tasks, it may be , go to Category/Connection/SSH, and check off the box "enable compression". When graphics

The Implications of the Concept of Lifelong Education for the Secondary School in the United Kingdom.

ERIC Educational Resources Information Center

Fincham, David

1982-01-01

Rapid changes in social circumstances and conditions will have a profound effect on ideas and attitudes concerning the role of the school. Schools ought to take account of these considerations and to examine critically their relationship with the wider society. (Falmer Press, Falmer House, Barcombe, Nr Lewes, East Sussex, BN8 5DL, UK) (SSH)

Planning Continuing Education to Meet the Needs of Nurses: Diabetes Mellitus Programs.

ERIC Educational Resources Information Center

Heller, Debbie Ransom; Brown, Sylvia J.

1983-01-01

It is critical for nurses to be aware of changing treatment strategies and new research developments in the field of diabetes. This is important so that nurses can respond to patient questions as well as, in some cases, modify their actual patient care approach. Thus, nurses are a vital target group for diabetes continuing education programs. (SSH)

Processing of Tense Morphology and Filler-Gap Dependencies by Chinese Second Language Speakers of English

ERIC Educational Resources Information Center

Dong, Zhiyin Renee

2014-01-01

There is an ongoing debate in the field of Second Language Acquisition concerning whether a fundamental difference exists between the native language (L1) and adult second language (L2) online processing of syntax and morpho-syntax. The Shallow Structure Hypothesis (SSH) (Clahsen and Felser, 2006a, b) states that L2 online parsing is qualitatively…

Role of rough surface topography on gas slip flow in microchannels.

PubMed

Zhang, Chengbin; Chen, Yongping; Deng, Zilong; Shi, Mingheng

2012-07-01

We conduct a lattice Boltzmann simulation of gas slip flow in microchannels incorporating rough surface effects as characterized by fractal geometry with a focus on gas-solid interaction. The gas slip flow in rough microchannels, which is characterized by Poiseuille number and mass flow rate, is evaluated and compared with smooth microchannels. The effects of roughness height, surface fractal dimension, and Knudsen number on slip behavior of gas flow in microchannels are all investigated and discussed. The results indicate that the presence of surface roughness reduces boundary slip for gas flow in microchannels with respect to a smooth surface. The gas flows at the valleys of rough walls are no-slip while velocity slips are observed over the top of rough walls. We find that the gas flow behavior in rough microchannels is insensitive to the surface topography irregularity (unlike the liquid flow in rough microchannels) but is influenced by the statistical height of rough surface and rarefaction effects. In particular, decrease in roughness height or increase in Knudsen number can lead to large wall slip for gas flow in microchannels.

Comparison study of noise reduction algorithms in dual energy chest digital tomosynthesis

NASA Astrophysics Data System (ADS)

Lee, D.; Kim, Y.-S.; Choi, S.; Lee, H.; Choi, S.; Kim, H.-J.

2018-04-01

Dual energy chest digital tomosynthesis (CDT) is a recently developed medical technique that takes advantage of both tomosynthesis and dual energy X-ray images. However, quantum noise, which occurs in dual energy X-ray images, strongly interferes with diagnosis in various clinical situations. Therefore, noise reduction is necessary in dual energy CDT. In this study, noise-compensating algorithms, including a simple smoothing of high-energy images (SSH) and anti-correlated noise reduction (ACNR), were evaluated in a CDT system. We used a newly developed prototype CDT system and anthropomorphic chest phantom for experimental studies. The resulting images demonstrated that dual energy CDT can selectively image anatomical structures, such as bone and soft tissue. Among the resulting images, those acquired with ACNR showed the best image quality. Both coefficient of variation and contrast to noise ratio (CNR) were the highest in ACNR among the three different dual energy techniques, and the CNR of bone was significantly improved compared to the reconstructed images acquired at a single energy. This study demonstrated the clinical value of dual energy CDT and quantitatively showed that ACNR is the most suitable among the three developed dual energy techniques, including standard log subtraction, SSH, and ACNR.

Rugometric and microtopographic non-invasive inspection in dental-resin composites and zirconia ceramics

NASA Astrophysics Data System (ADS)

Fernández-Oliveras, Alicia; Costa, Manuel F. M.; Pecho, Oscar E.; Rubiño, Manuel; Pérez, María. M.

2013-11-01

Surface properties are essential for a complete characterization of biomaterials. In restorative dentistry, the study of the surface properties of materials meant to replace dental tissues in an irreversibly diseased tooth is important to avoid harmful changes in future treatments. We have experimentally analyzed the surface characterization parameters of two different types of dental-resin composites and pre-sintered and sintered zirconia ceramics. We studied two shades of both composite types and two sintered zirconia ceramics: colored and uncolored. Moreover, a surface treatment was applied to one specimen of each dental-resin. All the samples were submitted to rugometric and microtopographic non-invasive inspection with the MICROTOP.06.MFC laser microtopographer in order to gather meaningful statistical parameters such as the average roughness (Ra), the root-mean-square deviation (Rq), the skewness (Rsk), and the kurtosis of the surface height distribution (Rku). For a comparison of the different biomaterials, the uncertainties associated to the surface parameters were also determined. With respect to Ra and Rq, significant differences between the composite shades were found. Among the dental resins, the nanocomposite presented the highest values and, for the zirconia ceramics, the pre-sintered sample registered the lowest ones. The composite performance may have been due to cluster-formation variations. Except for the composites with the surface treatment, the sample surfaces had approximately a normal distribution of heights. The surface treatment applied to the composites increased the average roughness and moved the height distribution farther away from the normal distribution. The zirconia-sintering process resulted in higher average roughness without affecting the height distribution.

Optimal control of build height utilizing optical profilometry in cold spray deposits

NASA Astrophysics Data System (ADS)

Chakraborty, Abhijit; Shishkin, Sergey; Birnkrant, Michael J.

2017-04-01

Part-to-part variability and poor part quality due to failure to maintain geometric specifications pose a challenge for adopting Additive Manufacturing (AM) as a viable manufacturing process. In recent years, In-process Monitoring and Control (InPMC) has received a lot of attention as an approach to overcome these obstacles. The ability to sense geometry of the deposited layers accurately enables effective process monitoring and control of AM application. This paper demonstrates an application of geometry sensing technique for the coating deposition Cold Spray process, where solid powders are accelerated through a nozzle, collides with the substrate and adheres to it. Often the deposited surface has shape irregularities. This paper proposes an approach to suppress the iregularities by controlling the deposition height. An analytical control-oriented model is developed that expresses the resulting height of deposit as an integral function of nozzle velocity and angle. In order to obtain height information at each layer, a Micro-Epsilon laser line scanner was used for surface profiling after each deposition. This surface profile information, specifically the layer height, was then fed back to an optimal control algorithm which manipulated the nozzle speed to control the layer height to a pre specified height. While the problem is heavily nonlinear, we were able to transform it into equivalent Optimal Control problem linear w.r.t. input. That enabled development of two solution methods: one is fast and approximate, while another is more accurate but still efficient.

Development of methods for inferring cloud thickness and cloud-base height from satellite radiance data

NASA Technical Reports Server (NTRS)

Smith, William L., Jr.; Minnis, Patrick; Alvarez, Joseph M.; Uttal, Taneil; Intrieri, Janet M.; Ackerman, Thomas P.; Clothiaux, Eugene

1993-01-01

Cloud-top height is a major factor determining the outgoing longwave flux at the top of the atmosphere. The downwelling radiation from the cloud strongly affects the cooling rate within the atmosphere and the longwave radiation incident at the surface. Thus, determination of cloud-base temperature is important for proper calculation of fluxes below the cloud. Cloud-base altitude is also an important factor in aircraft operations. Cloud-top height or temperature can be derived in a straightforward manner using satellite-based infrared data. Cloud-base temperature, however, is not observable from the satellite, but is related to the height, phase, and optical depth of the cloud in addition to other variables. This study uses surface and satellite data taken during the First ISCCP Regional Experiment (FIRE) Phase-2 Intensive Field Observation (IFO) period (13 Nov. - 7 Dec. 1991, to improve techniques for deriving cloud-base height from conventional satellite data.

Section Height Determination Methods of the Isotopographic Surface in a Complex Terrain Relief

ERIC Educational Resources Information Center

Syzdykova, Guldana D.; Kurmankozhaev, Azimhan K.

2016-01-01

A new method for determining the vertical interval of isotopographic surfaces on rugged terrain was developed. The method is based on the concept of determining the differentiated size of the vertical interval using spatial-statistical properties inherent in the modal characteristic, the degree of variability of apical heights and the chosen map…

The Martian atmospheric planetary boundary layer stability, fluxes, spectra, and similarity

NASA Technical Reports Server (NTRS)

Tillman, James E.

1994-01-01

This is the first analysis of the high frequency data from the Viking lander and spectra of wind, in the Martian atmospheric surface layer, along with the diurnal variation of the height of the mixed surface layer, are calculated for the first time for Mars. Heat and momentum fluxes, stability, and z(sub O) are estimated for early spring, from a surface temperature model and from Viking Lander 2 temperatures and winds at 44 deg N, using Monin-Obukhov similarity theory. The afternoon maximum height of the mixed layer for these seasons and conditions is estimated to lie between 3.6 and 9.2 km. Estimations of this height is of primary importance to all models of the boundary layer and Martian General Circulation Models (GCM's). Model spectra for two measuring heights and three surface roughnesses are calculated using the depth of the mixed layer, and the surface layer parameters and flow distortion by the lander is also taken into account. These experiments indicate that z(sub O), probably lies between 1.0 and 3.0 cm, and most likely is closer to 1.0 cm. The spectra are adjusted to simulate aliasing and high frequency rolloff, the latter caused both by the sensor response and the large Kolmogorov length on Mars. Since the spectral models depend on the surface parameters, including the estimated surface temperature, their agreement with the calculated spectra indicates that the surface layer estimates are self consistent. This agreement is especially noteworthy in that the inertial subrange is virtually absent in the Martian atmosphere at this height, due to the large Kolmogorov length scale. These analyses extend the range of applicability of terrestrial results and demonstrate that it is possible to estimate the effects of severe aliasing of wind measurements, to produce a models which agree well with the measured spectra. The results show that similarity theory developed for Earth applies to Mars, and that the spectral models are universal.

Automated River Reach Definition Strategies: Applications for the Surface Water and Ocean Topography Mission

NASA Astrophysics Data System (ADS)

Frasson, Renato Prata de Moraes; Wei, Rui; Durand, Michael; Minear, J. Toby; Domeneghetti, Alessio; Schumann, Guy; Williams, Brent A.; Rodriguez, Ernesto; Picamilh, Christophe; Lion, Christine; Pavelsky, Tamlin; Garambois, Pierre-André

2017-10-01

The upcoming Surface Water and Ocean Topography (SWOT) mission will measure water surface heights and widths for rivers wider than 100 m. At its native resolution, SWOT height errors are expected to be on the order of meters, which prevent the calculation of water surface slopes and the use of slope-dependent discharge equations. To mitigate height and width errors, the high-resolution measurements will be grouped into reaches (˜5 to 15 km), where slope and discharge are estimated. We describe three automated river segmentation strategies for defining optimum reaches for discharge estimation: (1) arbitrary lengths, (2) identification of hydraulic controls, and (3) sinuosity. We test our methodologies on 9 and 14 simulated SWOT overpasses over the Sacramento and the Po Rivers, respectively, which we compare against hydraulic models of each river. Our results show that generally, height, width, and slope errors decrease with increasing reach length. However, the hydraulic controls and the sinuosity methods led to better slopes and often height errors that were either smaller or comparable to those of arbitrary reaches of compatible sizes. Estimated discharge errors caused by the propagation of height, width, and slope errors through the discharge equation were often smaller for sinuosity (on average 8.5% for the Sacramento and 6.9% for the Po) and hydraulic control (Sacramento: 7.3% and Po: 5.9%) reaches than for arbitrary reaches of comparable lengths (Sacramento: 8.6% and Po: 7.8%). This analysis suggests that reach definition methods that preserve the hydraulic properties of the river network may lead to better discharge estimates.

Monitoring surface currents and transport variability in Drake Passage using altimetry and hydrography

NASA Astrophysics Data System (ADS)

Pavic, M.; Cunningham, S. A.; Challenor, P.; Duncan, L.

2003-04-01

Between 1993 and 2001 the UK has completed seven occupations of WOCE section SR1b from Burdwood Bank to Elephant Island across Drake Passage. The section consists of a minimum of 31 full depth CTD stations, shipboard ADCP measurements of currents in the upper 300m, and in three of the years full depth lowered ADCP measurements at each station. The section lies under the satellite track of ERS2. The satellite altimeter can determine the along track slope of the sea surface relative to a reference satellite pass once every 35 days. From this we can calculate the relative SSH slope or geostrophic surface current anomalies. If we measure simultaneously with any satellite pass, we can estimate the absolute surface geostrophic current for any subsequent pass. This says that by combining in situ absolute velocity measurements - the reference velocities with altimetry at one time the absolute geostrophic current can be estimated on any subsequent (or previous) altimeter pass. This is the method of Challenor et al. 1996, though they did not have the data to test this relationship. We have seven estimates of the surface reference velocity: one for each of the seven occupations of the WOCE line. The difference in any pair of reference velocities is predicted by the difference of the corresponding altimeter measurements. Errors in combining the satellite and hydrographic data are estimated by comparing pairs of these differences: errors arise from the in situ observations and from the altimetric measurements. Finally we produce our best estimates of eight years of absolute surface geostrophic currents and transport variability along WOCE section SR1 in Drake Passage.

Optimal leveling of flow over one-dimensional topography by Marangoni stresses

NASA Astrophysics Data System (ADS)

Gramlich, C. M.; Kalliadasis, Serafim; Homsy, G. M.; Messer, C.

2002-06-01

A thin viscous film flowing over a step down in topography exhibits a capillary ridge preceding the step. In applications, a planar liquid surface is often desired and hence there is a need to level the ridge. This paper investigates optimal leveling of the ridge by means of a Marangoni stress such as might be produced by a localized heater creating temperature variations at the film surface. The differential equation for the free surface based on lubrication theory and incorporating the effects of topography and temperature gradients is solved numerically for steps down in topography with different temperature profiles. Both rectangular "top-hat" and parabolic profiles, chosen to model physically realizable heaters, were found to be effective in reducing the height of the capillary ridge. Leveling the ridge is formulated as an optimization problem to minimize the maximum free-surface height by varying the heater strength, position, and width. With the optimized heaters, the variation in surface height is reduced by more than 50% compared to the original isothermal ridge. For more effective leveling, we consider an asymmetric n-step temperature distribution. The optimal n-step heater in this case results in (n+1) ridges of equal size; 2- and 3-step heaters reduce the variation in surface height by about 70% and 77%, respectively. Finally, we explore the potential of coolers and step temperature profiles for still more effective leveling.

A new Ellipsoidal Gravimetric-Satellite Altimetry Boundary Value Problem; Case study: High Resolution Geoid of Iran

NASA Astrophysics Data System (ADS)

Ardalan, A.; Safari, A.; Grafarend, E.

2003-04-01

A new ellipsoidal gravimetric-satellite altimetry boundary value problem has been developed and successfully tested. This boundary value problem has been constructed for gravity observables of the type (i) gravity potential (ii) gravity intensity (iii) deflection of vertical and (iv) satellite altimetry data. The developed boundary value problem is enjoying the ellipsoidal nature and as such can take advantage of high precision GPS observations in the set-up of the problem. The highlights of the solution are as follows: begin{itemize} Application of ellipsoidal harmonic expansion up to degree/order and ellipsoidal centrifugal field for the reduction of global gravity and isostasy effects from the gravity observable at the surface of the Earth. Application of ellipsoidal Newton integral on the equal area map projection surface for the reduction of residual mass effects within a radius of 55 km around the computational point. Ellipsoidal harmonic downward continuation of the residual observables from the surface of the earth down to the surface of reference ellipsoid using the ellipsoidal height of the observation points derived from GPS. Restore of the removed effects at the application points on the surface of reference ellipsoid. Conversion of the satellite altimetry derived heights of the water bodies into potential. Combination of the downward continued gravity information with the potential equivalent of the satellite altimetry derived heights of the water bodies. Application of ellipsoidal Bruns formula for converting the potential values on the surface of the reference ellipsoid into the geoidal heights (i.e. ellipsoidal heights of the geoid) with respect to the reference ellipsoid. Computation of the high-resolution geoid of Iran has successfully tested this new methodology!

Laser Altimeter for Flight Simulator

NASA Technical Reports Server (NTRS)

Webster, L. D.

1986-01-01

Height of flight-simulator probe above model of terrain measured by automatic laser triangulation system. Airplane simulated by probe that moves over model of terrain. Altitude of airplane scaled from height of probe above model. Height measured by triangulation of laser beam aimed at intersection of model surface with plumb line of probe.

Ice crystal number concentration measured at mountain-top research stations - What do we measure?

NASA Astrophysics Data System (ADS)

Beck, A.; Henneberger, J.; Fugal, J. P.; David, R.; Larcher, L.; Lohmann, U.

2017-12-01

To assess the impact of surface processes (e.g. blowing snow and hoar frost) on the ice crystal number concentrations (ICNCs) measured at mountain-top research stations, vertical profiles of ICNCs were observed up to a height of 10 m at the Sonnblick Observatory (SBO) in the Hohen Tauern Region, Austria. Independent of the presence of a cloud, the observed ICNCs decrease with height. This suggests a strong impact of surface processes on ICNCs measured at mountain-top research stations. Consequently, the measured ICNCs are not representative of the cloud, which limits the relevance of ground-based measurements for atmospheric studies. When the SBO was cloud free, the observed ICNCs reached several hundreds per liter near the surface and gradually decreased by more than two orders of magnitudes within the observed height interval of 10 m. The observed ice crystals had predominantly irregular habits, which is expected from surface processes. During in-cloud conditions, the ICNCs decreased between a factor of five and ten, if the ICNC at the surface was larger than 100 l-1. For one case study, the ICNC for regular and irregular ice crystals showed a similar relative decrease with height, which is not expected from surface processes. Therefore, we propose two near-surface processes that potentially enrich ICNCs near the surface and explain these findings: Either sedimenting ice crystals are captured in a turbulent layer above the surface or the ICNC is enhanced in a convergence zone, as the cloud is forced over a mountain. These two processes would also have an impact on ICNCs measured at mountain-top stations if the surrounding surface is not snow covered. Thus, ground-based measured ICNCs are uncharacteristic of the cloud properties aloft.

An in situ evaluation of TOPEX/Poseidon altimetric measurements versus meaurements made by moorings and inverted echo sounders for sea surface height

NASA Technical Reports Server (NTRS)

1994-01-01

The classical method of observing the sea surface height has been to make shipboard measurements of the vertical - density profile, and then calculating the surface height relative to a deeper reference surface. Two methods (a moored vertical string of instruments and an inverted echo sounder) were subsequently developed to obtain longer time in situ measurements. The first of these can be thought of as an extension of the discrete bottle hydrocast while the second integrates acoustically over the water column. One purpose of this note is to compare the result when coincidental observations are made by these two methods. This was done at two sites in the western tropical Pacific. Two inverted echo sounders were deployed alongside two enhanced TOGA-COARE moorings to be used in an in situ evaluation of TOPEX/Poseidon altimetric measurements of sea surface height. The mooring and inverted echo sounder data reproduced one another, at low frequency, with a correlation of 0.93 and 0.95 and the altimeter correlated with each of the above values ranging from 0.84 to 0.94. It is concluded that the altimetric measurements are statistically equivalent to the in situ measurements in the area of study.

Determining Titan surface topography from Cassini SAR data

USGS Publications Warehouse

Stiles, Bryan W.; Hensley, Scott; Gim, Yonggyu; Bates, David M.; Kirk, Randolph L.; Hayes, Alex; Radebaugh, Jani; Lorenz, Ralph D.; Mitchell, Karl L.; Callahan, Philip S.; Zebker, Howard; Johnson, William T.K.; Wall, Stephen D.; Lunine, Jonathan I.; Wood, Charles A.; Janssen, Michael; Pelletier, Frederic; West, Richard D.; Veeramacheneni, Chandini

2009-01-01

A technique, referred to as SARTopo, has been developed for obtaining surface height estimates with 10 km horizontal resolution and 75 m vertical resolution of the surface of Titan along each Cassini Synthetic Aperture Radar (SAR) swath. We describe the technique and present maps of the co-located data sets. A global map and regional maps of Xanadu and the northern hemisphere hydrocarbon lakes district are included in the results. A strength of the technique is that it provides topographic information co-located with SAR imagery. Having a topographic context vastly improves the interpretability of the SAR imagery and is essential for understanding Titan. SARTopo is capable of estimating surface heights for most of the SAR-imaged surface of Titan. Currently nearly 30% of the surface is within 100 km of a SARTopo height profile. Other competing techniques provide orders of magnitude less coverage. We validate the SARTopo technique through comparison with known geomorphological features such as mountain ranges and craters, and by comparison with co-located nadir altimetry, including a 3000 km strip that had been observed by SAR a month earlier. In this area, the SARTopo and nadir altimetry data sets are co-located tightly (within 5-10 km for one 500 km section), have similar resolution, and as expected agree closely in surface height. Furthermore the region contains prominent high spatial resolution topography, so it provides an excellent test of the resolution and precision of both techniques.

Determination of copper nanoparticle size distributions with total reflection X-ray fluorescence spectroscopy

DOE PAGES

Singh, Andy; Luening, Katharina; Brennan, Sean; ...

2017-01-01

Total reflection X-ray fluorescence (TXRF) analysis is extensively used by the semiconductor industry for measuring trace metal contamination on silicon surfaces. In addition to determining the quantity of impurities on a surface, TXRF can reveal information about the vertical distribution of contaminants by measuring the fluorescence signal as a function of the angle of incidence. In this study, two samples were intentionally contaminated with copper in non-deoxygenated and deoxygenated ultrapure water (UPW) resulting in impurity profiles that were either atomically dispersed in a thin film or particle-like, respectively. The concentration profile of the samples immersed into deoxygenated UPW was calculatedmore » using a theoretical concentration profile representative of particles, yielding a mean particle height of 16.1 nm. However, the resulting theoretical profile suggested that a distribution of particle heights exists on the surface. The fit of the angular distribution data was further refined by minimizing the residual error of a least-squares fit employing a model with a Gaussian distribution of particle heights about the mean height. The presence of a height distribution was also confirmed with atomic force microscopy measurements.« less

Determination of copper nanoparticle size distributions with total reflection X-ray fluorescence spectroscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Singh, Andy; Luening, Katharina; Brennan, Sean

Total reflection X-ray fluorescence (TXRF) analysis is extensively used by the semiconductor industry for measuring trace metal contamination on silicon surfaces. In addition to determining the quantity of impurities on a surface, TXRF can reveal information about the vertical distribution of contaminants by measuring the fluorescence signal as a function of the angle of incidence. In this study, two samples were intentionally contaminated with copper in non-deoxygenated and deoxygenated ultrapure water (UPW) resulting in impurity profiles that were either atomically dispersed in a thin film or particle-like, respectively. The concentration profile of the samples immersed into deoxygenated UPW was calculatedmore » using a theoretical concentration profile representative of particles, yielding a mean particle height of 16.1 nm. However, the resulting theoretical profile suggested that a distribution of particle heights exists on the surface. The fit of the angular distribution data was further refined by minimizing the residual error of a least-squares fit employing a model with a Gaussian distribution of particle heights about the mean height. The presence of a height distribution was also confirmed with atomic force microscopy measurements.« less

Meridional displacement of the Antarctic Circumpolar Current

PubMed Central

Gille, Sarah T.

2014-01-01

Observed long-term warming trends in the Southern Ocean have been interpreted as a sign of increased poleward eddy heat transport or of a poleward displacement of the entire Antarctic Circumpolar Current (ACC) frontal system. The two-decade-long record from satellite altimetry is an important source of information for evaluating the mechanisms governing these trends. While several recent studies have used sea surface height contours to index ACC frontal displacements, here altimeter data are instead used to track the latitude of mean ACC transport. Altimetric height contours indicate a poleward trend, regardless of whether they are associated with ACC fronts. The zonally averaged transport latitude index shows no long-term trend, implying that ACC meridional shifts determined from sea surface height might be associated with large-scale changes in sea surface height more than with localized shifts in frontal positions. The transport latitude index is weakly sensitive to the Southern Annular Mode, but is uncorrelated with El Niño/Southern Oscillation. PMID:24891396

Computation of turbulent flow in a thin liquid layer of fluid involving a hydraulic jump

NASA Technical Reports Server (NTRS)

Rahman, M. M.; Faghri, A.; Hankey, W. L.

1991-01-01

Numerically computed flow fields and free surface height distributions are presented for the flow of a thin layer of liquid adjacent to a solid horizontal surface that encounters a hydraulic jump. Two kinds of flow configurations are considered: two-dimensional plane flow and axisymmetric radial flow. The computations used a boundary-fitted moving grid method with a k-epsilon model for the closure of turbulence. The free surface height was determined by an optimization procedure which minimized the error in the pressure distribution on the free surface. It was also checked against an approximate procedure involving integration of the governing equations and use of the MacCormack predictor-corrector method. The computed film height also compared reasonably well with previous experiments. A region of recirculating flow was found to be present adjacent to the solid boundary near the location of the jump, which was caused by a rapid deceleration of the flow.

A Microstructural Approach Toward the Quantification of Anomaly Bond Coat Surface Geometry Change in NiCoCrAlY Plasma-Sprayed Bond Coat

NASA Astrophysics Data System (ADS)

Shahbeigi-Roodposhti, Peiman; Jordan, Eric; Shahbazmohamadi, Sina

2017-12-01

Three-dimensional behavior of NiCoCrAlY bond coat surface geometry change (known as rumpling) was characterized during 120 h of thermal cycling. The proposed scanning electron microscope (SEM)-based 3D imaging method allows for recording the change in both height and width at the same location during the heat treatment. Statistical analysis using both profile information [two dimensions (2D)] and surface information [three dimensions (3D)] demonstrated a typical nature of rumpling as increase in height and decrease in width. However, it also revealed an anomaly of height reduction between 40 and 80 cycles. Such behavior was further investigated by analyzing the bearing area ratio curve of the surface and attributed to filling of voids and valleys by the growth of thermally grown oxide.

Profilometry In The Angstrom Region

NASA Astrophysics Data System (ADS)

Politch, Jacob

1989-01-01

An interferometric system, based on heterodyne principle is described and which enables profile measurements of a surface with a high accuracy. It is possible to measure height variations of 4 Angstroms with a spatial resolution of 1 micrometer. Fran the surface height measurements, there were calculated its statistical properties, such as the R of the heights, the slopes and also its spectral density. The last one identifies the spatial frequencies of the surface, caused for example by the diamond turning mad-line and also by the measuring maChine. For an electro-magnetic wave with a Gaussian profile, which is incident the surface under test, the reflected complex field amplitude (CFA) near the focal region was calculated. jibe have defined the "Macroscopic wavelength" A, which was found to be constant for variations ▵z of the focal distance from the plane under test, for variations of the bean diameter wo in the focal region, while the complex index of refraction (CIF) of the surface under test was kept constant.

Estimating River Surface Elevation From ArcticDEM

NASA Astrophysics Data System (ADS)

Dai, Chunli; Durand, Michael; Howat, Ian M.; Altenau, Elizabeth H.; Pavelsky, Tamlin M.

2018-04-01

ArcticDEM is a collection of 2-m resolution, repeat digital surface models created from stereoscopic satellite imagery. To demonstrate the potential of ArcticDEM for measuring river stages and discharges, we estimate river surface heights along a reach of Tanana River near Fairbanks, Alaska, by the precise detection of river shorelines and mapping of shorelines to land surface elevation. The river height profiles over a 15-km reach agree with in situ measurements to a standard deviation less than 30 cm. The time series of ArcticDEM-derived river heights agree with the U.S. Geological Survey gage measurements with a standard deviation of 32 cm. Using the rating curve for that gage, we obtain discharges with a validation accuracy (root-mean-square error) of 234 m3/s (23% of the mean discharge). Our results demonstrate that ArcticDEM can accurately measure spatial and temporal variations of river surfaces, providing a new and powerful data set for hydrologic analysis.

Effects of morphology parameters on anti-icing performance in superhydrophobic surfaces

NASA Astrophysics Data System (ADS)

Nguyen, Thanh-Binh; Park, Seungchul; Lim, Hyuneui

2018-03-01

In this paper, we report the contributions of actual ice-substrate contact area and nanopillar height to passive anti-icing performance in terms of adhesion force and freezing time. Well-textured nanopillars with various parameters were fabricated via colloidal lithography and a dry etching process. The nanostructured quartz surface was coated with low-energy material to confer water-repellent properties. These superhydrophobic surfaces were investigated to determine the parameters essential for reducing adhesion strength and delaying freezing time. A well-textured surface with nanopillars of very small top diameter, regardless of height, could reduce adhesion force and delay freezing time in a subsequent de-icing process. Small top diameters of nanopillars also ensured the metastable Cassie-Baxter state based on energy barrier calculations. The results demonstrated the important role of areal fraction in anti-icing efficiency, and the negligible contribution of texture height. This insight into icing phenomena should lead to design of improved ice-phobic surfaces in the future.

The Geoscience Laser Altimeter System (GLAS) for the ICESAT Mission

NASA Technical Reports Server (NTRS)

Abshire, James B.; Sun, Xiao-Li; Ketchum, Eleanor A.; Afzal, Robert S.; Millar, Pamela S.

1999-01-01

Accurate measurements of surface heights and atmospheric backscatter have been demonstrated with the SLA, MOLA and LITE space lidar. Recent MOLA measurements of the Mars surface have 40 cm resolution and have reduced the global uncertainty in Mars topography from a few km to approx. 10 m. GLAS is a next generation lidar being developed as part of NASA's Icesat Mission for Earth orbit . The GLAS design combines a 10 cm precision surface lidar with a sensitive dual wavelength cloud and aerosol lidar. GLAS will precisely measure the heights of the Earth's polar ice sheets, determine the height profiles of the Earth's land topography, and profile the vertical backscatter of clouds and aerosols on a global scale. GLAS will fly on a small dedicated spacecraft in a polar orbit at 598 km altitude with an inclination of 94 degrees. GLAS is scheduled to launch in summer 2001 and to operate continuously for a minimum of 3 years with a goal of 5 years. The primary mission for GLAS is to measure the seasonal and annual changes in the heights of the Greenland and Antarctic ice sheets. GLAS will measure the vertical distance to the ice sheet from orbit with 1064 nm pulses from a Nd:Yag laser at 40 Hz. Each 5 nsec wide laser pulse is used for a single range measurement. When over land GLAS will profile the heights of the topography and vegetation. The GLAS receiver uses a I m diameter telescope and a Si APD detector. The detector signal is sampled by an all digital receiver which records each surface echo waveform with I nsec resolution and a stored echo record lengths of either 200, 400, or 600 samples. Analysis of the echo waveforms within the instrument permits discrimination between cloud and surface echoes. Ground based echo analysis permits precise ranging, determining the roughness or slopes of the surface as well as the vertical distributions of vegetation illuminated by the laser, Errors in knowledge of the laser beam pointing angle can bias height measurements of sloped surfaces. For surfaces with 2 deg. slopes, knowledge of pointing angle of the beam centroid to about 8 urad is required to achieve 10 cm height accuracy. GLAS uses a stellar reference system (SRS) to determine the pointing angle of each laser firing relative to inertial space. The SRS uses a high precision star camera oriented toward local zenith whose measurements are combined with a gyroscope to determine the inertial orientation of the SRS optical bench. The far field pattern of each laser pulse is measured with a laser reference system (LRS). Optically measuring each laser far field pattern relative to the star camera and gyroscope permits the angular offsets of each laser pulse to be determined. GLAS will also determine the vertical distributions of clouds and aerosols by measuring atmospheric backscatter profiles at both 1064 and 532 nm. The 1064 nm measurements use an analog detector and profile the height and vertical structure of thicker clouds. Measurements at 532 nm use new highly sensitive photon counting detectors, and measure the height distributions of very thin clouds and aerosol layers. With averaging these can be used to determine the height of the planetary boundary layer. The instrument design and expected performance will be discussed.

Estimating Vegetation Height from WorldView-02 and ArcticDEM Data for Broad Ecological Applications

NASA Astrophysics Data System (ADS)

Meddens, A. J.; Vierling, L. A.; Eitel, J.; Jennewein, J. S.; White, J. C.; Wulder, M.

2017-12-01

Boreal and arctic regions are warming at an unprecedented rate, and at a rate higher than in other regions across the globe. Ecological processes are highly responsive to temperature and therefore substantial changes in these northern ecosystems are expected. Recently, NASA initiated the Arctic-Boreal Vulnerability Experiment (ABoVE), which is a large-scale field campaign that aims to gain a better understanding of how the arctic responds to environmental change. High-resolution data products that quantify vegetation structure and function will improve efforts to assess these environmental change impacts. Our objective was to develop and test an approach that allows for mapping vegetation height at a 5m grid cell resolution across the ABoVE domain. To accomplish this, we selected three study areas across a north-south gradient in Alaska, representing an area of approximately 130 km2. We developed a RandomForest modeling approach for predicting vegetation height using the ArcticDEM (a digital surface model produced across the Arctic by the Polar Geospatial Center) and high-resolution multispectral satellite data (WorldView-2) in conjunction with aerial lidar data for calibration and validation. Vegetation height was successfully predicted across the three study areas and evaluated using an independent dataset, with R2 ranging from 0.58 to 0.76 and RMSEs ranging from 1.8 to 2.4 m. This predicted vegetation height dataset also led to the development of a digital terrain model using the ArcticDEM digital surface model by removing canopy heights from the surface heights. Our results show potential to establish a high resolution pan-arctic vegetation height map, which will provide useful information to a broad range of ongoing and future ecological research in high northern latitudes.

Height extrapolation of wind data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mikhail, A.S.

1982-11-01

Hourly average data for a period of 1 year from three tall meteorological towers - the Erie tower in Colorado, the Goodnoe Hills tower in Washington and the WKY-TV tower in Oklahoma - were used to analyze the wind shear exponent variabiilty with various parameters such as thermal stability, anemometer level wind speed, projection height and surface roughness. Different proposed models for prediction of height variability of short-term average wind speeds were discussed. Other models that predict the height dependence of Weilbull distribution parameters were tested. The observed power law exponent for all three towers showed strong dependence on themore » anemometer level wind speed and stability (nighttime and daytime). It also exhibited a high degree of dependence on extrapolation height with respect to anemometer height. These dependences became less severe as the anemometer level wind speeds were increased due to the turbulent mixing of the atmospheric boundary layer. The three models used for Weibull distribution parameter extrapolation were he velocity-dependent power law model (Justus), the velocity, surface roughness, and height-dependent model (Mikhail) and the velocity and surface roughness-dependent model (NASA). The models projected the scale parameter C fairly accurately for the Goodnoe Hills and WKY-TV towers and were less accurate for the Erie tower. However, all models overestimated the C value. The maximum error for the Mikhail model was less than 2% for Goodnoe Hills, 6% for WKY-TV and 28% for Erie. The error associated with the prediction of the shape factor (K) was similar for the NASA, Mikhail and Justus models. It ranged from 20 to 25%. The effect of the misestimation of hub-height distribution parameters (C and K) on average power output is briefly discussed.« less

Calibration of the TOPEX altimeter using a GPS buoy

NASA Technical Reports Server (NTRS)

Born, G. H.; Parke, Michael E.; Axelrad, P.; Gold, K. L.; Johnson, James; Key, K.; Kubitschek, Daniel G.; Christensen, Edward J.

1994-01-01

The use of a spar buoy equipped with a Global Positioning System (GPS) antenna to calibrate the height measurement of the TOPEX radar altimeter is described. In order to determine the height of the GPS antenna phase center above the ocean surface, the buoy was also equipped with instrumentation to measure the instantaneous location of the waterline, and tilt of the bouy from vertical. The experiment was conducted off the California coast near the Texaco offshore oil platform, Harvest, during cycle 34 of the TOPEX/POSEIDON observational period. GPS solutions were computed for the bouy position using two different software packages, K&RS and GIPSY-OASIS II. These solutions were combined with estimates of the waterline location on the bouy to yield the height of the ocean surface. The ocean surface height in an absolute coordinate system combined with knowledge of the spacecraft height from tracking data provides a computed altimeter range measurement. By comparing this computed value to the actual altimeter measurement, the altimeter bias can be calibrated. The altimeter height bias obtained with the buoy using K&RS was -14.6 +/- 4 cm, while with GIPSY-OASIS II it was -13.1 +/- 4 cm. These are 0.1 cm and 1.6 cm different from the -14.7 +/- 4 cm result obtained for this flight overflight with the tide gauge instruments located on Platform Harvest.

Predicting the movement of pumice rafts in the South Pacific using GNOME for enhanced navigational warnings and coastal hazard management policies

NASA Astrophysics Data System (ADS)

Kelly, J.; Bender, M.; Kelly, M.; Walters, C.

2013-12-01

Pumice rafts formed from explosive shallow submarine eruptions in the South Pacific pose a significant hazard to local maritime transportation and global coastal communities. Local concerns include the possibility of individual pumice clasts blocking seawater intake valves of ships, damaging the hull of smaller vessels, and inundating harbors bringing fishing and transport to a standstill. Additionally, pumice rafts can introduce harmful invasive species to delicate coastal communities around the world as they dramatically increase dispersal distances for otherwise benthic or relatively sedentary organisms. Two volcanoes in this region have recently formed pumice rafts: Home Reef volcano (Tonga) in 2006 and Havre Seamount (Kermadec Islands) in 2012. These raft events were used as case studies to test a trajectory prediction model since they occurred during times at which high spatial and temporal resolution satellite data were being collected and/or have been described in peer reviewed literature, both of which were necessary for providing model validation. The model was created using the General NOAA Observational Modeling Environment (GNOME), which utilizes sea surface winds and sea surface height (SSH) datasets to predict the possible trajectory a pollutant might follow on a body of water. Wind and ocean current data were acquired from the SeaWinds and Poseidon-3 sensors on board the NASA Earth Observing System (EOS) satellites QuikSCAT and Jason-2. Model outputs showed the 2012 Havre Seamount raft rapidly disperse as it drifted in an ENE direction and the 2006 Home Reef raft drifted quickly in a NW direction towards Papua New Guinea. The 2006 Home Reef prediction model was validated by comparing it to another published model that was based on an integrated surface velocity field in addition to in situ observations. The 2012 Havre Seamount prediction model was validated by spatially and temporally correlating the GNOME trajectory output with moderate-resolution MODIS multispectral data acquired from EOS satellites Aqua and Terra since the raft event has scarcely been studied. Pumice rafts in their early stages are easily observed in MODIS 250 m imagery but after ~5 weeks of exposure to wind shear while drifting, the rafts thinned to <1 km and became extremely difficult to see. Utilization of a higher spatial resolution sensor such as the Operational Land Imager on board LandSat 8 is necessary for imaging and tracking pumice rafts beyond this timeframe, although a significant decrease in temporal resolution is realized. This novel and easily adaptable methodology can be used by island nations and fishery managers to forecast when and where a pumice raft will be, drastically enhancing maritime navigational warnings and response times to eventual pumice landfall.

Morphologic Quality of DSMs Based on Optical and Radar Space Imagery

NASA Astrophysics Data System (ADS)

Sefercik, U. G.; Bayik, C.; Karakis, S.; Jacobsen, K.

2011-09-01

Digital Surface Models (DSMs) are representing the visible surface of the earth by the height corresponding to its X-, Y-location and height value Z. The quality of a DSM can be described by the accuracy and the morphologic details. Both depend upon the used input information, the used technique and the roughness of the terrain. The influence of the topographic details to the DSM quality is shown for the test fields Istanbul and Zonguldak. Zonguldak has a rough mountainous character with heights from sea level up to 1640m, while Istanbul is dominated by rolling hills going up to an elevation of 435m. DSMs from SPOT-5, the SRTM C-band height models and ASTER GDEM have been investigated. The DSMs have been verified with height models from large scale aerial photos being more accurate and including morphologic details. It was necessary to determine and respect shifts of the height models caused by datum problems and orientation of the height models. The DSM quality is analyzed depending upon the terrain inclination. The DSM quality differs for both test fields. The morphologic quality depends upon the point spacing of the analyzed DSMs and the terrain characteristics.

A combined optical, SEM and STM study of growth spirals on the polytypic cadmium iodide crystals

NASA Astrophysics Data System (ADS)

Singh, Rajendra; Samanta, S. B.; Narlikar, A. V.; Trigunayat, G. C.

2000-05-01

Some novel results of a combined sequential study of growth spirals on the basal surface of the richly polytypic CdI 2 crystals by optical microscopy, scanning electron microscopy (SEM) and scanning tunneling microscopy (STM) are presented and discussed. Under the high resolution and magnification achieved in the scanning electron microscope, the growth steps of large heights seen in the optical micrographs are found to have a large number of additional steps of smaller heights existing between any two adjacent large height growth steps. When further seen by a scanning tunneling microscope, which provides still higher resolution, sequences of unit substeps, each of height equal to the unit cell height of the underlying polytype, are revealed to exist on the surface. Several large steps also lie between the unit steps, with heights equal to an integral multiple of either the unit cell height of the underlying polytype or the thickness of a molecular sheet I-Cd-I. It is suggested that initially a giant screw dislocation may form by brittle fracture of the crystal platelet, which may gradually decompose into numerous unit dislocations during subsequent crystal growth.

Effect of the Earth's inner structure on the gravity in definitions of height systems

NASA Astrophysics Data System (ADS)

Tenzer, Robert; Foroughi, Ismael; Pitoňák, Martin; Šprlák, Michal

2017-04-01

In context of the vertical datum unification, the geoid-to-quasi-geoid separation has been of significant interest in recent years, because most of existing local vertical datums are realized in the system of either normal or orthometric heights. Nevertheless, the normal-orthometric heights are still used in many other countries where the normal gravity values along leveling lines were adopted instead of the observed gravity. Whereas the conversion between the orthometric and normal heights is defined by means of the mean gravity disturbances (i.e. differences between the mean values of the actual and normal gravity) along the plumbline within the topography, differences between the normal and normal-orthometric heights can be described by means of the surface gravity disturbances. Since the normal gravity field does not reflect the topographic masses and actual mass density distribution inside the Earth, the definition of gravity represents a principal aspect for a realization of particular vertical datum. To address this issue in this study, we investigate effects of the Earth's inner density structure on the surface and mean gravity disturbances, and discuss their impact on the vertical datum realization. These two gravity field quantities are computed globally with a spectral resolution complete to a spherical harmonic degree 2160 using the global gravity, terrain, ice-thickness, inland bathymetry and crustal structure models. Our results reveal that both, the surface and mean gravity disturbances mostly comprise the gravitational signal of topography and masses distributed below the geoid surface. Moreover, in polar areas, a significant contribution comes from large glaciers. In contrast, the contributions of anomalous density distribution within the topography attributed to major lakes, sediments and bedrock density variations are much less pronounced. We also demonstrate that the mean gravity disturbances within the topography are significantly modified compared to the corresponding surface values mainly due to topographic elevation and terrain geometry as well as the presence of large glaciers in polar regions. Changes of the vertical gravity gradient within the topography attributed to the masses distributed below the geoid (dominated mainly by the isostatic signature and the long-wavelength gravitational signature of deep mantle density heterogeneities) are, on the other hand, relatively small. Despite differences between the normal and normal-orthometric heights could directly be assessed from the surface gravity disturbances only when taken along leveling lines with information about the spirit leveling height differences, our results indicate that differences between these two height systems can be significant.

A revised calibration of the interferometric mode of the CryoSat-2 radar altimeter improves ice height and height change measurements in western Greenland

NASA Astrophysics Data System (ADS)

Gray, Laurence; Burgess, David; Copland, Luke; Dunse, Thorben; Langley, Kirsty; Moholdt, Geir

2017-05-01

We compare geocoded heights derived from the interferometric mode (SARIn) of CryoSat to surface heights from calibration-validation sites on Devon Ice Cap and western Greenland. Comparisons are included for both the heights derived from the first return (the point-of-closest-approach or POCA) and heights derived from delayed waveform returns (swath processing). While swath-processed heights are normally less precise than edited POCA heights, e.g. standard deviations of ˜ 3 and ˜ 1.5 m respectively for the western Greenland site, the increased coverage possible with swath data complements the POCA data and provides useful information for both system calibration and improving digital elevation models (DEMs). We show that the pre-launch interferometric baseline coupled with an additional roll correction ( ˜ 0.0075° ± 0.0025°), or equivalent phase correction ( ˜ 0.0435 ± 0.0145 radians), provides an improved calibration of the interferometric SARIn mode. We extend the potential use of SARIn data by showing the influence of surface conditions, especially melt, on the return waveforms and that it is possible to detect and measure the height of summer supraglacial lakes in western Greenland. A supraglacial lake can provide a strong radar target in the waveform, stronger than the initial POCA return, if viewed at near-normal incidence. This provides an ideal situation for swath processing and we demonstrate a height precision of ˜ 0.5 m for two lake sites, one in the accumulation zone and one in the ablation zone, which were measured every year from 2010 or 2011 to 2016. Each year the lake in the ablation zone was viewed in June by ascending passes and then 5.5 days later by descending passes, which allows an approximate estimate of the filling rate. The results suggest that CryoSat waveform data and measurements of supraglacial lake height change could complement the use of optical satellite imagery and be helpful as proxy indicators for surface melt around Greenland.

Plume Dispersion over Idealized Urban-liked Roughness with Height Variation: an LES Approach

NASA Astrophysics Data System (ADS)

Wong, Colman Ching Chi; Liu, Chun-Ho

2013-04-01

Human activities (e.g. vehicular emission) are the primary pollutant sources affecting the health and living quality of stakeholders in modern compact cities. Gaussian plume dispersion model is commonly used for pollutant distribution estimate that works well over rural areas with flat terrain. However, its major parameters, dispersion coefficients, exclude the effect of surface roughness that unavoidably prone to error handling the pollutant transport in the urban boundary layer (UBL) over building roughness. Our recent large-eddy simulation (LES) has shown that urban surfaces affect significantly the pollutant dispersion over idealized, identical two-dimensional (2D) street canyons of uniform height. As an extension to our on-going effort, this study is conceived to investigate how rough urban surfaces, which are constructed by 2D street canyons of non-uniform height, modify the UBL pollutant dispersion . A series of LESs with idealized roughness elements of non-uniform heights were performed in neutral stratification. Building models with two different heights were placed alternatively in the computational domain to construct 2D street canyons in cross flows. The plume dispersion from a ground-level passive pollutant source over more realistic urban areas was then examined. Along with the existing building-height-to-street-width (aspect) ratio (AR), a new parameter, building-height variability (BHV), is used to measure the building height unevenness. Four ARs (1, 0.5, 0.25 and 0.125) and three BHVs (20%, 40% and 60%) were considered in this study. Preliminary results show that BHV greatly increases the aerodynamic roughness of the hypothetical urban surfaces for narrow street canyons. Analogous to our previous findings, the air exchange rate (ACH) of street canyons increases with increasing friction factor, implying that street-level ventilation could be improved by increasing building roughness via BHV. In addition, the parameters used in dispersion coefficient estimates are related to the friction factor in the way similar to that of uniform street canyons, i.e. they are linear functions of friction factor when the roughness is small and become insensitive to friction factor thereafter over very rough surfaces. It is thus suggested that aerodynamic resistance is the key factor affecting the air quality in urban areas. Moreover, the friction factor could be used to parameterize the dispersion coefficients over different roughness elements.

Applications That Participate in Their Own Defense (APOD)

DTIC Science & Technology

2003-05-01

bandwidth requirements from multiple applications and uses ssh to directly login the RSVP routers to reconfigure the priority queues. This approach...detect flooding. 3 Emerald makes use of some signature matching techniques on BSM logs, but the unique strength of Emerald technology is in event...mechanisms that provide awareness, and IDSs form an important class of these4. We investigated several COTS and research IDSs including Emerald

A Technique for Presenting a Deceptive Dynamic Network Topology

DTIC Science & Technology

2013-03-01

Comment RIP Routing Information Protocol SNOS Systemic Network Obfuscation System SSH Secure Shell TCP Transmission Control Protocol TTL time to live...because it sacrifices elements available in Transmission Control Protocol ( TCP ) such as ordered delivery of packets, delivery confirmation and duplication...avoidance [4]. Of note, some traceroute implementations use TCP packets since they are able to pass through firewalls which are typically configured

Similarities and Differences in Patterns and Geolocation of SSH Attack Data

DTIC Science & Technology

2015-09-01

failed inputs. ..................................................................................14  Figure 7.  Latest “ passwd ” commands entered by...also has fake file contents to allow an attacker to “cat” files like /etc/ passwd [12]. Kippo saves all downloaded files for later inspection. The...overall post-compromise activity, human activity inside the honeypot, top 10 inputs (overall), top 10 successful inputs, top 10 failed inputs, passwd

Characterization of resistance to pine wood nematode infection in Pinus thunbergii using suppression subtractive hybridization.

PubMed

Hirao, Tomonori; Fukatsu, Eitaro; Watanabe, Atsushi

2012-01-24

Pine wilt disease is caused by the pine wood nematode, Bursaphelenchus xylophilus, which threatens pine forests and forest ecosystems worldwide and causes serious economic losses. In the 40 years since the pathogen was identified, the physiological changes occurring as the disease progresses have been characterized using anatomical and biochemical methods, and resistant trees have been selected via breeding programs. However, no studies have assessed the molecular genetics, e.g. transcriptional changes, associated with infection-induced physiological changes in resistant or susceptible trees. We constructed seven subtractive suppression hybridization (SSH) cDNA libraries using time-course sampling of trees inoculated with pine wood nematode at 1, 3, or 7 days post-inoculation (dpi) in susceptible trees and at 1, 3, 7, or 14 dpi in resistant trees. A total of 3,299 sequences was obtained from these cDNA libraries, including from 138 to 315 non-redundant sequences in susceptible SSH libraries and from 351 to 435 in resistant SSH libraries. Using Gene Ontology hierarchy, those non-redundant sequences were classified into 15 subcategories of the biological process Gene Ontology category and 17 subcategories of the molecular function category. The transcriptional components revealed by the Gene Ontology classification clearly differed between resistant and susceptible libraries. Some transcripts were discriminative: expression of antimicrobial peptide and putative pathogenesis-related genes (e.g., PR-1b, 2, 3, 4, 5, 6) was much higher in susceptible trees than in resistant trees at every time point, whereas expression of PR-9, PR-10, and cell wall-related genes (e.g., for hydroxyproline-rich glycoprotein precursor and extensin) was higher in resistant trees than in susceptible trees at 7 and 14 dpi. Following inoculation with pine wood nematode, there were marked differences between resistant and susceptible trees in transcript diversity and the timing and level of transcripts expressed in common; in particular, expression of stress response and defense genes differed. This study provided new insight into the differences in the physiological changes between resistant and susceptible trees that have been observed in anatomical and biochemical studies.

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels.

PubMed

Pieretti, Isabelle; Royer, Monique; Barbe, Valérie; Carrere, Sébastien; Koebnik, Ralf; Couloux, Arnaud; Darrasse, Armelle; Gouzy, Jérôme; Jacques, Marie-Agnès; Lauber, Emmanuelle; Manceau, Charles; Mangenot, Sophie; Poussier, Stéphane; Segurens, Béatrice; Szurek, Boris; Verdier, Valérie; Arlat, Matthieu; Gabriel, Dean W; Rott, Philippe; Cociancich, Stéphane

2012-11-21

Xanthomonas albilineans causes leaf scald, a lethal disease of sugarcane. X. albilineans exhibits distinctive pathogenic mechanisms, ecology and taxonomy compared to other species of Xanthomonas. For example, this species produces a potent DNA gyrase inhibitor called albicidin that is largely responsible for inducing disease symptoms; its habitat is limited to xylem; and the species exhibits large variability. A first manuscript on the complete genome sequence of the highly pathogenic X. albilineans strain GPE PC73 focused exclusively on distinctive genomic features shared with Xylella fastidiosa-another xylem-limited Xanthomonadaceae. The present manuscript on the same genome sequence aims to describe all other pathogenicity-related genomic features of X. albilineans, and to compare, using suppression subtractive hybridization (SSH), genomic features of two strains differing in pathogenicity. Comparative genomic analyses showed that most of the known pathogenicity factors from other Xanthomonas species are conserved in X. albilineans, with the notable absence of two major determinants of the "artillery" of other plant pathogenic species of Xanthomonas: the xanthan gum biosynthesis gene cluster, and the type III secretion system Hrp (hypersensitive response and pathogenicity). Genomic features specific to X. albilineans that may contribute to specific adaptation of this pathogen to sugarcane xylem vessels were also revealed. SSH experiments led to the identification of 20 genes common to three highly pathogenic strains but missing in a less pathogenic strain. These 20 genes, which include four ABC transporter genes, a methyl-accepting chemotaxis protein gene and an oxidoreductase gene, could play a key role in pathogenicity. With the exception of hypothetical proteins revealed by our comparative genomic analyses and SSH experiments, no genes potentially involved in any offensive or counter-defensive mechanism specific to X. albilineans were identified, supposing that X. albilineans has a reduced artillery compared to other pathogenic Xanthomonas species. Particular attention has therefore been given to genomic features specific to X. albilineans making it more capable of evading sugarcane surveillance systems or resisting sugarcane defense systems. This study confirms that X. albilineans is a highly distinctive species within the genus Xanthomonas, and opens new perpectives towards a greater understanding of the pathogenicity of this destructive sugarcane pathogen.

Signal Processing for Determining Water Height in Steam Pipes with Dynamic Surface Conditions

NASA Technical Reports Server (NTRS)

Lih, Shyh-Shiuh; Lee, Hyeong Jae; Bar-Cohen, Yoseph

2015-01-01

An enhanced signal processing method based on the filtered Hilbert envelope of the auto-correlation function of the wave signal has been developed to monitor the height of condensed water through the steel wall of steam pipes with dynamic surface conditions. The developed signal processing algorithm can also be used to estimate the thickness of the pipe to determine the cut-off frequency for the low pass filter frequency of the Hilbert Envelope. Testing and analysis results by using the developed technique for dynamic surface conditions are presented. A multiple array of transducers setup and methodology are proposed for both the pulse-echo and pitch-catch signals to monitor the fluctuation of the water height due to disturbance, water flow, and other anomaly conditions.

A theoretical approach to the relationship between wettability and surface microstructures of epidermal cells and structured cuticles of flower petals

PubMed Central

Taneda, Haruhiko; Watanabe-Taneda, Ayako; Chhetry, Rita; Ikeda, Hiroshi

2015-01-01

Background and Aims The epidermal surface of a flower petal is composed of convex cells covered with a structured cuticle, and the roughness of the surface is related to the wettability of the petal. If the surface remains wet for an excessive amount of time the attractiveness of the petal to floral visitors may be impaired, and adhesion of pathogens may be promoted. However, it remains unclear how the epidermal cells and structured cuticle contribute to surface wettability of a petal. Methods By considering the additive effects of the epidermal cells and structured cuticle on petal wettability, a thermodynamic model was developed to predict the wetting mode and contact angle of a water droplet at a minimum free energy. Quantitative relationships between petal wettability and the geometries of the epidermal cells and the structured cuticle were then estimated. Measurements of contact angles and anatomical traits of petals were made on seven herbaceous species commonly found in alpine habitats in eastern Nepal, and the measured wettability values were compared with those predicted by the model using the measured geometries of the epidermal cells and structured cuticles. Key Results The model indicated that surface wettability depends on the height and interval between cuticular steps, and on a height-to-width ratio for epidermal cells if a thick hydrophobic cuticle layer covers the surface. For a petal epidermis consisting of lenticular cells, a repellent surface results when the cuticular step height is greater than 0·85 µm and the height-to-width ratio of the epidermal cells is greater than 0·3. For an epidermis consisting of papillate cells, a height-to-width ratio of greater than 1·1 produces a repellent surface. In contrast, if the surface is covered with a thin cuticle layer, the petal is highly wettable (hydrophilic) irrespective of the roughness of the surface. These predictions were supported by the measurements of petal wettability made on flowers of alpine species. Conclusions The results indicate that surface roughness caused by epidermal cells and a structured cuticle produces a wide range of petal wettability, and that this can be successfully modelled using a thermodynamic approach. PMID:25851137

Seasonal variability of the Red Sea, from GRACE time-variable gravity and altimeter sea surface height measurements

NASA Astrophysics Data System (ADS)

Wahr, John; Smeed, David; Leuliette, Eric; Swenson, Sean

2014-05-01

Seasonal variability of sea surface height and mass within the Red Sea, occurs mostly through the exchange of heat with the atmosphere and wind-driven inflow and outflow of water through the strait of Bab el Mandab that opens into the Gulf of Aden to the south. The seasonal effects of precipitation and evaporation, of water exchange through the Suez Canal to the north, and of runoff from the adjacent land, are all small. The flow through the Bab el Mandab involves a net mass transfer into the Red Sea during the winter and a net transfer out during the summer. But that flow has a multi-layer pattern, so that in the summer there is actually an influx of cool water at intermediate (~100 m) depths. Thus, summer water in the southern Red Sea is warmer near the surface due to higher air temperatures, but cooler at intermediate depths (especially in the far south). Summer water in the northern Red Sea experiences warming by air-sea exchange only. The temperature profile affects the water density, which impacts the sea surface height but has no effect on vertically integrated mass. Here, we study this seasonal cycle by combining GRACE time-variable mass estimates, altimeter (Jason-1, Jason-2, and Envisat) measurements of sea surface height, and steric sea surface height contributions derived from depth-dependent, climatological values of temperature and salinity obtained from the World Ocean Atlas. We find good consistency, particularly in the northern Red Sea, between these three data types. Among the general characteristics of our results are: (1) the mass contributions to seasonal SSHT variations are much larger than the steric contributions; (2) the mass signal is largest in winter, consistent with winds pushing water into the Red Sea through the Strait of Bab el Mandab in winter, and out during the summer; and (3) the steric signal is largest in summer, consistent with summer sea surface warming.

Studies of the 3D surface roughness height

DOE Office of Scientific and Technical Information (OSTI.GOV)

Avisane, Anita; Rudzitis, Janis; Kumermanis, Maris

2013-12-16

Nowadays nano-coatings occupy more and more significant place in technology. Innovative, functional coatings acquire new aspects from the point of view of modern technologies, considering the aggregate of physical properties that can be achieved manipulating in the production process with the properties of coatings’ surfaces on micro- and nano-level. Nano-coatings are applied on machine parts, friction surfaces, contacting parts, corrosion surfaces, transparent conducting films (TCF), etc. The equipment available at present for the production of transparent conducting oxide (TCO) coatings with highest quality is based on expensive indium tin oxide (ITO) material; therefore cheaper alternatives are being searched for. Onemore » such offered alternative is zink oxide (ZnO) nano-coatings. Evaluating the TCF physical and mechanical properties and in view of the new ISO standard (EN ISO 25178) on the introduction of surface texture (3D surface roughness) in the engineering calculations, it is necessary to examine the height of 3D surface roughness, which is one of the most significant roughness parameters. The given paper studies the average values of 3D surface roughness height and the most often applied distribution laws are as follows: the normal distribution and Rayleigh distribution. The 3D surface is simulated by a normal random field.« less

Slip and accommodation coefficients from rarefaction and roughness in rotating microscale disk flows

NASA Astrophysics Data System (ADS)

Blanchard, Danny; Ligrani, Phil

2007-06-01

Accommodation coefficients are determined from experimental results and analysis based on the Navier-Stokes equations for rotation-induced flows in C-shaped fluid chamber passages formed between a rotating disk and a stationary surface. A first-order boundary condition is used to model the slip flow. The fluid chamber passage height ranges from 6.85to29.2μm to give Knudsen numbers from 0.0025 to 0.031 for air and helium. In all cases, roughness size is large compared to molecular mean free path. The unique method presented for deducing tangential momentum accommodation coefficients gives values with less uncertainty compared to procedures that rely on flows in stationary tubes and channels. When channel height is defined at the tops of the roughness elements, slip velocity magnitudes and associated accommodation coefficients are a result of rarefaction at solid-gas interfaces and shear at the gas-gas interfaces. With this arrangement, tangential accommodation coefficients obtained with this approach decrease, and slip velocity magnitudes increase, at a particular value of Knudsen number, as the level of surface roughness increases. At values of the mean roughness height greater than 500nm, accommodation coefficients then appear to be lower in air flows than in helium flows, when compared for a particular roughness configuration. When channel height is defined midway between the crests and troughs of the roughness elements, nondimensional pressure rise data show little or no dependence on the level of disk surface roughness and working fluid. With this arrangement, slip is largely independent of surface roughness magnitude and mostly due to rarefaction, provided the appropriate channel height is chosen to define the roughness height.

On the performance of surface renewal analysis to estimate sensible heat flux over two growing rice fields under the influence of regional advection

NASA Astrophysics Data System (ADS)

Castellví, F.; Snyder, R. L.

2009-09-01

SummaryHigh-frequency temperature data were recorded at one height and they were used in Surface Renewal (SR) analysis to estimate sensible heat flux during the full growing season of two rice fields located north-northeast of Colusa, CA (in the Sacramento Valley). One of the fields was seeded into a flooded paddy and the other was drill seeded before flooding. To minimize fetch requirements, the measurement height was selected to be close to the maximum expected canopy height. The roughness sub-layer depth was estimated to discriminate if the temperature data came from the inertial or roughness sub-layer. The equation to estimate the roughness sub-layer depth was derived by combining simple mixing-length theory, mixing-layer analogy, equations to account for stable atmospheric surface layer conditions, and semi-empirical canopy-architecture relationships. The potential for SR analysis as a method that operates in the full surface boundary layer was tested using data collected over growing vegetation at a site influenced by regional advection of sensible heat flux. The inputs used to estimate the sensible heat fluxes included air temperature sampled at 10 Hz, the mean and variance of the horizontal wind speed, the canopy height, and the plant area index for a given intermediate height of the canopy. Regardless of the stability conditions and measurement height above the canopy, sensible heat flux estimates using SR analysis gave results that were similar to those measured with the eddy covariance method. Under unstable cases, it was shown that the performance was sensitive to estimation of the roughness sub-layer depth. However, an expression was provided to select the crucial scale required for its estimation.

Dynamics of an optically confined nanoparticle diffusing normal to a surface.

PubMed

Schein, Perry; O'Dell, Dakota; Erickson, David

2016-06-01

Here we measure the hindered diffusion of an optically confined nanoparticle in the direction normal to a surface, and we use this to determine the particle-surface interaction profile in terms of the absolute height. These studies are performed using the evanescent field of an optically excited single-mode silicon nitride waveguide, where the particle is confined in a height-dependent potential energy well generated from the balance of optical gradient and surface forces. Using a high-speed cmos camera, we demonstrate the ability to capture the short time-scale diffusion dominated motion for 800-nm-diam polystyrene particles, with measurement times of only a few seconds per particle. Using established theory, we show how this information can be used to estimate the equilibrium separation of the particle from the surface. As this measurement can be made simultaneously with equilibrium statistical mechanical measurements of the particle-surface interaction energy landscape, we demonstrate the ability to determine these in terms of the absolute rather than relative separation height. This enables the comparison of potential energy landscapes of particle-surface interactions measured under different experimental conditions, enhancing the utility of this technique.

Progress Report on the GROWTH (GNSS Reflectometry for Ocean Waves, Tides, and Height) Research Project

NASA Astrophysics Data System (ADS)

Kitazawa, Y.; Ichikawa, K.; Akiyama, H.; Ebinuma, T.; Isoguchi, O.; Kimura, N.; Konda, M.; Kouguchi, N.; Tamura, H.; Tomita, H.; Yoshikawa, Y.; Waseda, T.

2016-12-01

Global Navigation Satellite Systems (GNSS), such as GPS is a system of satellites that provide autonomous geo-spatial positioning with global coverage. It allows small electronic receivers to determine their location to high precision using radio signals transmitted from satellites, GNSS reflectometry (GNSS-R) involves making measurements from the reflections from the Earth of navigation signals from GNSS satellites. Reflected signals from sea surface are considered that those are useful to observe sea state and sea surface height. We have started a research program for GNSS-R applications on oceanographic observations under the contract with MEXT (Ministry of Education Culture, Sports, Science and Technology, JAPAN) and launched a Japanese research consortium, GROWTH (GNSS Reflectometry for Ocean Waves, Tides, and Height). It is aiming to evaluate the capabilities of GNSS-R observations for oceanographic phenomena with different time scales, such as ocean waves (1/10 to tens of seconds), tides (one or half days), and sea surface dynamic height (a few days to years). In situ observations of ocean wave spectrum, wind speed vertical profile, and sea surface height will be quantitatively compared with equivalent estimates from simultaneous GNSS-R measurements. The GROWTH project will utilize different types of observation platforms; marine observation towers (about 20 m height), multi-copters (about 100 to 150 m height), and much higher-altitude CYGNSS data. Cross-platform data, together with in situ oceanographic observations, will be compared after adequate temporal averaging that accounts differences of the footprint sizes and temporal and spatial scales of oceanographic phenomena. This paper will provide overview of the GROWTH project, preliminary test results, obtained by the multi-sensor platform at observation towers, suggest actual footprint sizes and identification of swell. Preparation status of a ground station which will be supplied to receive CYGNSS data at Japan, is also reported. Compatibility tests to CYGNSS data and refurbishment of the ground station were completed.

Stability diagrams for the surface patterns of GaN(0001bar) as a function of Schwoebel barrier height

NASA Astrophysics Data System (ADS)

Krzyżewski, Filip; Załuska-Kotur, Magdalena A.

2017-01-01

Height and type of Schwoebel barriers (direct or inverse) decides about the character of the surface instability. Different surface morphologies are presented. Step bunches, double steps, meanders, mounds and irregular patterns emerge at the surface as a result of step (Schwoebel) barriers at some temperature or miscut values. The study was carried out on the two-component kinetic Monte Carlo (kMC) model of GaN(0001bar) surface grown in nitrogen rich conditions. Diffusion of gallium adatoms over N-polar surface is slow and nitrogen adatoms are almost immobile. We show that in such conditions surfaces remain smooth when gallium adatoms diffuse in the presence of low inverse Schwoebel barrier. It is illustrated by adequate stability diagrams for surface morphologies.

Applicability of non-destructive substitutes for leaf area in different stands of Norway spruce (Picea abies L. Karst.) focusing on traditional forest crown measures.

PubMed

Laubhann, Daniel; Eckmüllner, Otto; Sterba, Hubert

2010-09-30

Since individual tree leaf area is an important measure for productivity as well as for site occupancy, it is of high interest in many studies about forest growth. The exact determination of leaf area is nearly impossible. Thus, a common way to get information about leaf area is to use substitutes. These substitutes are often variables which are collected in a destructive way which is not feasible for long term studies. Therefore, this study aimed at testing the applicability of using substitutes for leaf area which could be collected in a non-destructive way, namely crown surface area and crown projection area. In 8 stands of Norway spruce (Picea abies L. Karst.), divided into three age classes and two thinning treatments, a total of 156 trees were felled in order to test the relationship between leaf area and crown surface area and crown projection area, respectively. Individual tree leaf area of the felled sample trees was estimated by 3P-branch sampling with an accuracy of ±10%. Crown projection area and crown surface area were compared with other, more commonly used, but destructive predictors of leaf area, namely sapwood area at different heights on the bole. Our investigations confirmed findings of several studies that sapwood area is the most precise measure for leaf area because of the high correlation between sapwood area and the leaf area. But behind sapwood area at crown base and sapwood area at three tenth of the tree height the predictive ability of crown surface area was ranked third and even better than that of sapwood area at breast height (R(2) = 0.656 compared with 0.600). Within the stands leaf area is proportional to crown surface area. Using the pooled data of all stands a mixed model approach showed that additionally to crown surface area dominant height and diameter at breast height (dbh) improved the leaf area estimates. Thus, taking dominant height and dbh into account, crown surface area can be recommended for estimating the leaf area of individual trees. The resulting model was in line with many other findings on the leaf area and leaf mass relationships with crown size. From the additional influence of dominant height and dbh in the leaf area model we conclude that the used crown model could be improved by estimating the position of the maximum crown width and the crown width at the base of the crown depending on these two variables.

Applicability of non-destructive substitutes for leaf area in different stands of Norway spruce (Picea abies L. Karst.) focusing on traditional forest crown measures

PubMed Central

Laubhann, Daniel; Eckmüllner, Otto; Sterba, Hubert

2010-01-01

Since individual tree leaf area is an important measure for productivity as well as for site occupancy, it is of high interest in many studies about forest growth. The exact determination of leaf area is nearly impossible. Thus, a common way to get information about leaf area is to use substitutes. These substitutes are often variables which are collected in a destructive way which is not feasible for long term studies. Therefore, this study aimed at testing the applicability of using substitutes for leaf area which could be collected in a non-destructive way, namely crown surface area and crown projection area. In 8 stands of Norway spruce (Picea abies L. Karst.), divided into three age classes and two thinning treatments, a total of 156 trees were felled in order to test the relationship between leaf area and crown surface area and crown projection area, respectively. Individual tree leaf area of the felled sample trees was estimated by 3P-branch sampling with an accuracy of ±10%. Crown projection area and crown surface area were compared with other, more commonly used, but destructive predictors of leaf area, namely sapwood area at different heights on the bole. Our investigations confirmed findings of several studies that sapwood area is the most precise measure for leaf area because of the high correlation between sapwood area and the leaf area. But behind sapwood area at crown base and sapwood area at three tenth of the tree height the predictive ability of crown surface area was ranked third and even better than that of sapwood area at breast height (R2 = 0.656 compared with 0.600). Within the stands leaf area is proportional to crown surface area. Using the pooled data of all stands a mixed model approach showed that additionally to crown surface area dominant height and diameter at breast height (dbh) improved the leaf area estimates. Thus, taking dominant height and dbh into account, crown surface area can be recommended for estimating the leaf area of individual trees. The resulting model was in line with many other findings on the leaf area and leaf mass relationships with crown size. From the additional influence of dominant height and dbh in the leaf area model we conclude that the used crown model could be improved by estimating the position of the maximum crown width and the crown width at the base of the crown depending on these two variables. PMID:21072126

Statistical models for sediment/detritus and dissolved absorption coefficients in coastal waters of the northern Gulf of Mexico

NASA Astrophysics Data System (ADS)

Green, Rebecca E.; Gould, Richard W., Jr.; Ko, Dong S.

2008-06-01

We developed statistically-based, optical models to estimate tripton (sediment/detrital) and colored dissolved organic matter (CDOM) absorption coefficients ( a sd, a g) from physical hydrographic and atmospheric properties. The models were developed for northern Gulf of Mexico shelf waters using multi-year satellite and physical data. First, empirical algorithms for satellite-derived a sd and a g were developed, based on comparison with a large data set of cruise measurements from northern Gulf shelf waters; these algorithms were then applied to a time series of ocean color (SeaWiFS) satellite imagery for 2002-2005. Unique seasonal timing was observed in satellite-derived optical properties, with a sd peaking most often in fall/winter on the shelf, in contrast to summertime peaks observed in a g. Next, the satellite-derived values were coupled with the physical data to form multiple regression models. A suite of physical forcing variables were tested for inclusion in the models: discharge from the Mississippi River and Mobile Bay, Alabama; gridded fields for winds, precipitation, solar radiation, sea surface temperature and height (SST, SSH); and modeled surface salinity and currents (Navy Coastal Ocean Model, NCOM). For satellite-derived a sd and a g time series (2002-2004), correlation and stepwise regression analyses revealed the most important physical forcing variables. Over our region of interest, the best predictors of tripton absorption were wind speed, river discharge, and SST, whereas dissolved absorption was best predicted by east-west wind speed, river discharge, and river discharge lagged by 1 month. These results suggest the importance of vertical mixing (as a function of winds and thermal stratification) in controlling a sd distribution patterns over large regions of the shelf, in comparison to advection as the most important control on a g. The multiple linear regression models for estimating a sd and a g were applied on a pixel-by-pixel basis and results were compared to monthly SeaWiFS composite imagery. The models performed well in resolving seasonal and interannual optical variability in model development years (2002-2004) (mean error of 32% for a sd and 29% for a g) and in predicting shelfwide optical patterns in a year independent of model development (2005; mean error of 41% for a sd and 46% for a g). The models provide insight into the dominant processes controlling optical distributions in this region, and they can be used to predict the optical fields from the physical properties at monthly timescales.

Evaluation of the operational Aerosol Layer Height retrieval algorithm for Sentinel-5 Precursor: application to O2 A band observations from GOME-2A

NASA Astrophysics Data System (ADS)

Sanders, A. F. J.; de Haan, J. F.; Sneep, M.; Apituley, A.; Stammes, P.; Vieitez, M. O.; Tilstra, L. G.; Tuinder, O. N. E.; Koning, C. E.; Veefkind, J. P.

2015-06-01

An algorithm setup for the operational Aerosol Layer Height product for TROPOMI on the Sentinel-5 Precursor mission is described and discussed, applied to GOME-2A data, and evaluated with lidar measurements. The algorithm makes a spectral fit of reflectance at the O2 A band in the near-infrared and the fit window runs from 758 to 770 nm. The aerosol profile is parameterized by a scattering layer with constant aerosol volume extinction coefficient and aerosol single scattering albedo and with a fixed pressure thickness. The algorithm's target parameter is the height of this layer. In this paper, we apply the algorithm to observations from GOME-2A in a number of systematic and extensive case studies and we compare retrieved aerosol layer heights with lidar measurements. Aerosol scenes cover various aerosol types, both elevated and boundary layer aerosols, and land and sea surfaces. The aerosol optical thicknesses for these scenes are relatively moderate. Retrieval experiments with GOME-2A spectra are used to investigate various sensitivities, in which particular attention is given to the role of the surface albedo. From retrieval simulations with the single-layer model, we learn that the surface albedo should be a fit parameter when retrieving aerosol layer height from the O2 A band. Current uncertainties in surface albedo climatologies cause biases and non-convergences when the surface albedo is fixed in the retrieval. Biases disappear and convergence improves when the surface albedo is fitted, while precision of retrieved aerosol layer pressure is still largely within requirement levels. Moreover, we show that fitting the surface albedo helps to ameliorate biases in retrieved aerosol layer height when the assumed aerosol model is inaccurate. Subsequent retrievals with GOME-2A spectra confirm that convergence is better when the surface albedo is retrieved simultaneously with aerosol parameters. However, retrieved aerosol layer pressures are systematically low (i.e., layer high in the atmosphere) to the extent that retrieved values are not realistically representing actual extinction profiles anymore. When the surface albedo is fixed in retrievals with GOME-2A spectra, convergence deteriorates as expected, but retrieved aerosol layer pressures become much higher (i.e., layer lower in atmosphere). The comparison with lidar measurements indicates that retrieved aerosol layer heights are indeed representative of the underlying profile in that case. Finally, subsequent retrieval simulations with two-layer aerosol profiles show that a model error in the assumed profile (two layers in the simulation but only one in the retrieval) is partly absorbed by the surface albedo when this parameter is fitted. This is expected in view of the correlations between errors in fit parameters and the effect is relatively small for elevated layers (less than 100 hPa). In case one of the scattering layers is near the surface (boundary layer aerosols), the effect becomes surprisingly large such that the retrieved height of the single layer is above the two-layer profile. Furthermore, we find that the retrieval solution, once retrieval converges, hardly depends on the starting values for the fit. Sensitivity experiments with GOME-2A spectra also show that aerosol layer height is indeed relatively robust against inaccuracies in the assumed aerosol model, even when the surface albedo is not fitted. We show spectral fit residuals, which can be used for further investigations. Fit residuals may be partly explained by spectroscopic uncertainties, which is suggested by an experiment showing the improvement of convergence when the absorption cross section is scaled in agreement with Butz et al. (2012) and Crisp et al. (2012) and a temperature offset to the a priori ECMWF temperature profile is fitted. Retrieved temperature offsets are always negative and quite large (ranging between -4 and -8 K), which is not expected if temperature offsets absorb remaining inaccuracies in meteorological data. Other sensitivity experiments investigate fitting of stray light and fluorescence emissions. We find negative radiance offsets and negative fluorescence emissions, also for non-vegetated areas, but from the results it is not clear whether fitting these parameters improves the retrieval. Based on the present results, the operational baseline for the Aerosol Layer Height product currently will not fit the surface albedo. The product will be particularly suited for elevated, optically thick aerosol layers. In addition to its scientific value in climate research, anticipated applications of the product for TROPOMI are providing aerosol height information for aviation safety and improving interpretation of the Absorbing Aerosol Index.

Evaluation of the operational Aerosol Layer Height retrieval algorithm for Sentinel-5 Precursor: application to O2 A band observations from GOME-2A

NASA Astrophysics Data System (ADS)

Sanders, A. F. J.; de Haan, J. F.; Sneep, M.; Apituley, A.; Stammes, P.; Vieitez, M. O.; Tilstra, L. G.; Tuinder, O. N. E.; Koning, C. E.; Veefkind, J. P.

2015-11-01

An algorithm setup for the operational Aerosol Layer Height product for TROPOMI on the Sentinel-5 Precursor mission is described and discussed, applied to GOME-2A data, and evaluated with lidar measurements. The algorithm makes a spectral fit of reflectance at the O2 A band in the near-infrared and the fit window runs from 758 to 770 nm. The aerosol profile is parameterised by a scattering layer with constant aerosol volume extinction coefficient and aerosol single scattering albedo and with a fixed pressure thickness. The algorithm's target parameter is the height of this layer. In this paper, we apply the algorithm to observations from GOME-2A in a number of systematic and extensive case studies, and we compare retrieved aerosol layer heights with lidar measurements. Aerosol scenes cover various aerosol types, both elevated and boundary layer aerosols, and land and sea surfaces. The aerosol optical thicknesses for these scenes are relatively moderate. Retrieval experiments with GOME-2A spectra are used to investigate various sensitivities, in which particular attention is given to the role of the surface albedo. From retrieval simulations with the single-layer model, we learn that the surface albedo should be a fit parameter when retrieving aerosol layer height from the O2 A band. Current uncertainties in surface albedo climatologies cause biases and non-convergences when the surface albedo is fixed in the retrieval. Biases disappear and convergence improves when the surface albedo is fitted, while precision of retrieved aerosol layer pressure is still largely within requirement levels. Moreover, we show that fitting the surface albedo helps to ameliorate biases in retrieved aerosol layer height when the assumed aerosol model is inaccurate. Subsequent retrievals with GOME-2A spectra confirm that convergence is better when the surface albedo is retrieved simultaneously with aerosol parameters. However, retrieved aerosol layer pressures are systematically low (i.e., layer high in the atmosphere) to the extent that retrieved values no longer realistically represent actual extinction profiles. When the surface albedo is fixed in retrievals with GOME-2A spectra, convergence deteriorates as expected, but retrieved aerosol layer pressures become much higher (i.e., layer lower in atmosphere). The comparison with lidar measurements indicates that retrieved aerosol layer heights are indeed representative of the underlying profile in that case. Finally, subsequent retrieval simulations with two-layer aerosol profiles show that a model error in the assumed profile (two layers in the simulation but only one in the retrieval) is partly absorbed by the surface albedo when this parameter is fitted. This is expected in view of the correlations between errors in fit parameters and the effect is relatively small for elevated layers (less than 100 hPa). If one of the scattering layers is near the surface (boundary layer aerosols), the effect becomes surprisingly large, in such a way that the retrieved height of the single layer is above the two-layer profile. Furthermore, we find that the retrieval solution, once retrieval converges, hardly depends on the starting values for the fit. Sensitivity experiments with GOME-2A spectra also show that aerosol layer height is indeed relatively robust against inaccuracies in the assumed aerosol model, even when the surface albedo is not fitted. We show spectral fit residuals, which can be used for further investigations. Fit residuals may be partly explained by spectroscopic uncertainties, which is suggested by an experiment showing the improvement of convergence when the absorption cross section is scaled in agreement with Butz et al. (2013) and Crisp et al. (2012), and a temperature offset to the a priori ECMWF temperature profile is fitted. Retrieved temperature offsets are always negative and quite large (ranging between -4 and -8 K), which is not expected if temperature offsets absorb remaining inaccuracies in meteorological data. Other sensitivity experiments investigate fitting of stray light and fluorescence emissions. We find negative radiance offsets and negative fluorescence emissions, also for non-vegetated areas, but from the results it is not clear whether fitting these parameters improves the retrieval. Based on the present results, the operational baseline for the Aerosol Layer Height product currently will not fit the surface albedo. The product will be particularly suited for elevated, optically thick aerosol layers. In addition to its scientific value in climate research, anticipated applications of the product for TROPOMI are providing aerosol height information for aviation safety and improving interpretation of the Absorbing Aerosol Index.

Interaction of Highly Underexpanded Jets with Simulated Lunar Surfaces

NASA Technical Reports Server (NTRS)

Stitt, Leonard E.

1961-01-01

Pressure distributions and erosion patterns on simulated lunar surfaces (hard and soft) and interference effects between the surface and two representative lunar vehicles (cylindrical and spherical) were obtained with cold-air jets at various descent heights and nozzle total-pressure ratios up to 288,000. Surface pressure distributions were dependent on both nozzle area ratio and, nozzle contour. Peak pressures obtained with a sonic nozzle agreed closely with those predicted theoretically for a near-sonic jet expanding into a vacuum. Short bell-shaped nozzles gave annular pressure distributions; the low center pressure resulted from the coalescence of shocks that originated within the nozzle. The high surface pressures were contained within a circle whose diameter was about 16 throat diameters, regardless of nozzle area ratio or contour. The peak pressure increased rapidly as the vehicle approached the surface; for example, at a descent height of 40 throat diameters the peak pressure was 0.4 percent of the chamber pressure, but increased to 6 percent at 13 throat diameters. The exhaust jet eroded a circular concave hole in white sand at descent heights from about 200 to 600 throat diameters. The hole diameter was about 225 throat diameters, while the depth was approximately 60 throat diameters. The sand particles, which formed a conical sheet at a semivertex angle of 50 deg, appeared to follow a ballistic trajectory and at no time struck the vehicle. An increase in pressure was measured on the base of the cylindrical lunar vehicle when it approached to within 14 throat diameters of the hard, flat surface. No interference effects were noted between the spherical model and the surface to descent heights as low as 8 throat diameters.

14 CFR 77.23 - Standards for determining obstructions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... each additional nautical mile of distance from the airport up to a maximum of 500 feet. (3) A height... surfaces: (1) A height of 500 feet above ground level at the site of the object. (2) A height that is 200 feet above ground level or above the established airport elevation, whichever is higher, within 3...

14 CFR 77.23 - Standards for determining obstructions.

Code of Federal Regulations, 2011 CFR

2011-01-01

... feet for each additional nautical mile of distance from the airport up to a maximum of 500 feet. (3) A... heights or surfaces: (1) A height of 500 feet above ground level at the site of the object. (2) A height that is 200 feet above ground level or above the established airport elevation, whichever is higher...

Effects of body height, notebook computer size, and workstation height on recommended adjustments for proper work posture when operating a notebook computer.

PubMed

Nanthavanij, Suebsak; Jalil, Sakib; Ammarapala, Veeris

2008-12-01

Factors which are likely to affect recommended workstation and notebook computer (NBC) adjustments to obtain ergonomic work posture during NBC operation are investigated. They are: (1) body height, (2) NBC size, and (3) workstation height (i.e., seat and work surface heights). Six recommended adjustments which are evaluated include: (1) footrest height, (2) seat support height, (3) NBC base support height, (4) distance between the user's body and NBC (or user-NBC distance), (5) tilt angle of NBC base, and (6) screen angle. It is found that body height has a significant effect on footrest height and user-NBC distance while NBC size has a significant effect on user-NBC distance, tilt angle of NBC base, and screen angle. Workstation height, on the other hand, does not show any effect on the six recommended adjustments. However, the results suggest that there are interactions between body height and NBC size, and between body height and workstation height when evaluating their effects on footrest height, tilt angle of NBC base, and screen angle.

Climbing ability of teneral and sclerotized adult bed bugs and assessment of adhesive properties of the exoskeletal fluid using atomic force microscopy.

PubMed

Hinson, Kevin R; Reukov, Vladimir; Benson, Eric P; Zungoli, Patricia A; Bridges, William C; Ellis, Brittany R; Song, Jinbo

2017-01-01

We observed that teneral adults (<1 h post-molt) of Cimex lectularius L. appeared more adept at climbing a smooth surface compared to sclerotized adults. Differences in climbing ability on a smooth surface based on sclerotization status were quantified by measuring the height to which bed bugs climbed when confined within a glass vial. The average maximum height climbed by teneral (T) bed bugs (n = 30, height climbed = 4.69 cm) differed significantly (P< 0.01) from recently sclerotized (RS) bed bugs (n = 30, height climbed = 1.73 cm at ~48 h post molt), sclerotized group 1 (S1) bed bugs (n = 30, S1 = 2.42 cm at >72 h), and sclerotized group 2 (S2) bed bugs (n = 30, height climbed = 2.64 cm at >72 h post molt). When heights from all climbing events were summed, teneral bed bugs (650.8 cm climbed) differed significantly (P< 0.01) from recently sclerotized (82 cm climbed) and sclerotized (group 1 = 104.6 cm climbed, group 2 = 107.8 cm climbed) bed bugs. These findings suggested that the external surface of teneral bed bug exoskeletons possess an adhesive property. Using atomic force microscopy (AFM), we found that adhesion force of an exoskeletal (presumably molting) fluid decreased almost five-fold from 88 to 17 nN within an hour of molting. Our findings may have implications for laboratory safety and the effectiveness of bed bug traps, barriers, and biomimetic-based adhesives.

Spatiotemporal Variability in Observations of Urban Mixed-Layer Heights from Surface-based Lidar Systems during DISCOVER-AQ 2011

NASA Astrophysics Data System (ADS)

Lewis, J. R.; Banks, R. F.; Berkoff, T.; Welton, E. J.; Joseph, E.; Thompson, A. M.; Decola, P.; Hegarty, J. D.

2015-12-01

Accurate characterization of the planetary boundary layer height is crucial for numerical weather prediction, estimating pollution emissions and modeling air quality. More so, given the increasing trend in global urban populations, there is a growing need to improve our understanding of the urban boundary layer structure and development. The Deriving Information on Surface conditions from COlumn and VERtically resolved observations relevant to Air Quality (DISCOVER-AQ) 2011 field campaign, which took place in the Baltimore-Washington DC region, offered a unique opportunity to study boundary layer processes in an urban area using a geographically dense collection of surface-based lidar systems (see figure). Lidars use aerosols as tracers for atmospheric boundary layer dynamics with high vertical and temporal resolutions. In this study, we use data from two permanent Micropulse Lidar Network (MPLNET) sites and five field deployed Micropulse lidar (MPL) systems in order to observe spatiotemporal variations in the daytime mixed layer height. We present and compare lidar-derived retrievals of the mixed layer height using two different methods. The first method uses the wavelet covariance transform and a "fuzzy logic" attribution scheme in order to determine the mixed layer height. The second method uses an objective approach utilizing a time-adaptive extended Kalman filter. Independent measurements of the boundary layer height are obtained using profiles from ozonesonde launches at the Beltsville and Edgewood sites for comparison with lidar observations.

The Geoscience Laser Altimeter System (GLAS) for the ICESAT Mission

NASA Technical Reports Server (NTRS)

Abshire, James B.; Sun, Xia-Li; Ketchum, Eleanor A.; Afzal, Robert S.; Millar, Pamela S.; Smith, David E. (Technical Monitor)

2000-01-01

The Laser In space Technology Experiment, Shuttle Laser Altimeter and the Mars Observer Laser Altimeter have demonstrated accurate measurements of atmospheric backscatter and Surface heights from space. The recent MOLA measurements of the Mars surface have 40 cm vertical resolution and have reduced the global uncertainty in Mars topography from a few km to about 5 m. The Geoscience Laser Altimeter System (GLAS) is a next generation lidar for Earth orbit being developed as part of NASA's Icesat Mission. The GLAS design combines a 10 cm precision surface lidar with a sensitive dual wavelength cloud and aerosol lidar. GLAS will precisely measure the heights of the Earth's polar ice sheets, establish a grid of accurate height profiles of the Earth's land topography, and profile the vertical backscatter of clouds and aerosols on a global scale. GLAS is being developed to fly on a small dedicated spacecraft in a polar orbit with a 590 630 km altitude at inclination of 94 degrees. GLAS is scheduled to launch in the summer 2001 and to operate continuously for a minimum of 3 years with a goal of 5 years. The primary mission for GLAS is to measure the seasonal and annual changes in the heights of the Greenland and Antarctic ice sheets. GLAS will continuously measure the vertical distance from orbit to the Earth's surface with 1064 nm pulses from a ND:YAG laser at a 40 Hz rate. Each 5 nsec wide laser pulse is used to produce a single range measurement, and the laser spots have 66 m diameter and about 170 m center-center spacings. When over land GLAS will profile the heights of the topography and vegetation. The GLAS receiver uses a 1 m diameter telescope and a Si APD detector. The detector signal is sampled by an all digital receiver which records each surface echo waveform with I nsec resolution and a stored echo record lengths of either 200, 400, or 600 samples. Analysis of the echo waveforms within the instrument permits discrimination between cloud and surface echoes. Ground based echo analysis permits precise ranging, determining the roughness or slopes of the surface as well as the vertical distributions of vegetation illuminated by the laser. Accurate knowledge of the laser beam's pointing angle is needed to prevent height biases when over sloped surfaces. For surfaces with 2 deg. slopes, knowledge of pointing angle of the beam's centroid to about 8 urad is needed to achieve 10 cm height accuracy. GLAS uses a stellar reference system (SRS) to determine the pointing angle of each laser firing relative to inertial space. The SRS uses a high precision star camera oriented toward local zenith and a gyroscope to determine the inertial orientation of the SRS optical bench. The far field pattern of each laser is measured pulse relative to the star camera with a laser reference system (LRS). Optically measuring each laser far field pattern relative to the orientation of the star camera and gyroscope permits the precise pointing angle of each laser pulse to be determined. GLAS will also determine the vertical distributions of clouds and aerosols by measuring the vertical profile of laser energy backscattered by the atmosphere at both 1064 and 532 nm. The 1064 nm measurements use the Si APD detector and profile the height and vertical structure of thicker clouds. The measurements at 532 nm use new highly sensitive photon counting, detectors, and measure the height distributions of very thin Clouds and aerosol layers. With averaging these can be used to determine the height of the planetary boundary layer. The instrument design and expected performance will be discussed.

The Influence of Structure Heights and Opening Angles of Micro- and Nanocones on the Macroscopic Surface Wetting Properties

NASA Astrophysics Data System (ADS)

Schneider, Ling; Laustsen, Milan; Mandsberg, Nikolaj; Taboryski, Rafael

2016-02-01

We discuss the influence of surface structure, namely the height and opening angles of nano- and microcones on the surface wettability. We show experimental evidence that the opening angle of the cones is the critical parameter on sample superhydrophobicity, namely static contact angles and roll-off angles. The textured surfaces are fabricated on silicon wafers by using a simple one-step method of reactive ion etching at different processing time and gas flow rates. By using hydrophobic coating or hydrophilic surface treatment, we are able to switch the surface wettability from superhydrophilic to superhydrophobic without altering surface structures. In addition, we show examples of polymer replicas (polypropylene and poly(methyl methacrylate) with different wettability, fabricated by injection moulding using templates of the silicon cone-structures.

Measuring the rebound resilience of a bouncing ball

NASA Astrophysics Data System (ADS)

Wadhwa, Ajay

2012-09-01

Some balls which are made of high-quality rubber (an elastomeric) material, such as tennis or squash balls, could be used for the determination of an important property of such materials called resilience. Since a bouncing ball involves a single impact we call this property 'rebound resilience' and express it as the ratio of the rebound height to the initial drop height of the ball. We determine the rebound resilience for three different types of ball by calculating the coefficient of restitution of the ball-surface combination from the experimentally measurable physical quantities, such as initial drop height and time interval between successive bounces. Using these we also determine the contact time of balls with the surface of impact. For measurements we have used audio, motion and surface-temperature sensors that were interfaced through a USB port with a computer.

The NRL relocatable ocean/acoustic ensemble forecast system

NASA Astrophysics Data System (ADS)

Rowley, C.; Martin, P.; Cummings, J.; Jacobs, G.; Coelho, E.; Bishop, C.; Hong, X.; Peggion, G.; Fabre, J.

2009-04-01

A globally relocatable regional ocean nowcast/forecast system has been developed to support rapid implementation of new regional forecast domains. The system is in operational use at the Naval Oceanographic Office for a growing number of regional and coastal implementations. The new system is the basis for an ocean acoustic ensemble forecast and adaptive sampling capability. We present an overview of the forecast system and the ocean ensemble and adaptive sampling methods. The forecast system consists of core ocean data analysis and forecast modules, software for domain configuration, surface and boundary condition forcing processing, and job control, and global databases for ocean climatology, bathymetry, tides, and river locations and transports. The analysis component is the Navy Coupled Ocean Data Assimilation (NCODA) system, a 3D multivariate optimum interpolation system that produces simultaneous analyses of temperature, salinity, geopotential, and vector velocity using remotely-sensed SST, SSH, and sea ice concentration, plus in situ observations of temperature, salinity, and currents from ships, buoys, XBTs, CTDs, profiling floats, and autonomous gliders. The forecast component is the Navy Coastal Ocean Model (NCOM). The system supports one-way nesting and multiple assimilation methods. The ensemble system uses the ensemble transform technique with error variance estimates from the NCODA analysis to represent initial condition error. Perturbed surface forcing or an atmospheric ensemble is used to represent errors in surface forcing. The ensemble transform Kalman filter is used to assess the impact of adaptive observations on future analysis and forecast uncertainty for both ocean and acoustic properties.

TOPEX/El Nino Watch - El Nino Warm Water Pool Returns to Near Normal State, Mar, 14, 1998

NASA Technical Reports Server (NTRS)

1998-01-01

This image of the Pacific Ocean was produced using sea surface height measurements taken by the U.S.-French TOPEX/Poseidon satellite. The image shows sea surface height relative to normal ocean conditions on Mar. 14, 1998 and sea surface height is an indicator of the heat content of the ocean. The image shows that the sea surface height along the central equatorial Pacific has returned to a near normal state. Oceanographers indicate this is a classic pattern, typical of a mature El Nino condition. Remnants of the El Nino warm water pool, shown in red and white, are situated to the north and south of the equator. These sea surface height measurements have provided scientists with a detailed view of how the 1997-98 El Nino's warm pool behaves because the TOPEX/Poseidon satellite measures the changing sea surface height with unprecedented precision. In this image, the white and red areas indicate unusual patterns of heat storage; in the white areas, the sea surface is between 14 and 32 centimeters (6 to 13 inches) above normal; in the red areas, it's about 10 centimeters (4 inches) above normal. The green areas indicate normal conditions, while purple (the western Pacific) means at least 18 centimeters (7 inches) below normal sea level. The El Nino phenomenon is thought to be triggered when the steady westward blowing trade winds weaken and even reverse direction. This change in the winds allows a large mass of warm water (the red and white area) that is normally located near Australia to move eastward along the equator until it reaches the coast of South America. The displacement of so much warm water affects evaporation, where rain clouds form and, consequently, alters the typical atmospheric jet stream patterns around the world. Using satellite imagery, buoy and ship data, and a forecasting model of the ocean-atmosphere system, the National Oceanic and Atmospheric Administration, (NOAA), has continued to issue an advisory indicating the so-called El Nino weather conditions that have impacted much of the United States and the world are expected to remain through the spring.

For more information, please visit the TOPEX/Poseidon project web page at http://topex-www.jpl.nasa.gov

The Characterization of Atmospheric Boundary Layer Depth and Turbulence in a Mixed Rural and Urban Convective Environment

NASA Astrophysics Data System (ADS)

Hicks, Micheal M.

A comprehensive analysis of surface-atmosphere flux exchanges over a mixed rural and urban convective environment is conducted at Howard University Beltsville, MD Research Campus. This heterogeneous site consists of rural, suburban and industrial surface covers to its south, east and west, within a 2 km radius of a flux sensor. The eddy covariance method is utilized to estimate surface-atmosphere flux exchanges of momentum, heat and moisture. The attributes of these surface flux exchanges are contrasted to those of classical homogeneous sites and assessed for accuracy, to evaluate the following: (I) their similarity to conventional convective boundary layer (CBL) processes and (II) their representativeness of the surrounding environment's turbulent properties. Both evaluations are performed as a function of upwind surface conditions. In particular, the flux estimates' obedience to spectrum power laws and similarity theory relationships is used for performing the first evaluation, and their ability to close the surface energy balance and accurately model CBL heights is used for the latter. An algorithm that estimates atmospheric boundary layer heights from observed lidar extinction backscatter was developed, tested and applied in this study. The derived lidar based CBL heights compared well with those derived from balloon borne soundings, with an overall Pearson correlation coefficient and standard deviation of 0.85 and 223 m, respectively. This algorithm assisted in the evaluation of the response of CBL processes to surface heterogeneity, by deriving high temporal CBL heights and using them as independent references of the surrounding area averaged sensible heat fluxes. This study found that the heterogeneous site under evaluation was rougher than classical homogeneous sites, with slower dissipation rates of turbulent kinetic energy. Flux measurements downwind of the industrial complexes exhibited enhanced efficiency in surface-atmosphere momentum, heat, and moisture transport relative to their similarity theory predictions. In addition, these enhanced heat flux estimates ingested into the CBL slab model overestimated observed CBL heights. More spatial flux observations are needed to better understand the role that the industrial complexes are playing in enhancing the efficiency of turbulent processes, which may have important implications on the role humans are assuming in regional climate change.

Systematic Assessment of the Impact of User Roles on Network Flow Patterns

DTIC Science & Technology

2017-09-01

Protocol SNMP Simple Network Management Protocol SQL Structured Query Language SSH Secure Shell SYN TCP Sync Flag SVDD Support Vector Data Description SVM...and evaluating users based on roles provide the best approach for defining normal digital behaviors? People are individuals, with different interests...activities on the network. We evaluate the assumption that users sharing similar roles exhibit similar network behaviors, and contrast the level of similarity

Hardware Assisted Stealthy Diversity (CHECKMATE)

DTIC Science & Technology

2013-09-01

applicable across multiple architectures. Figure 29 shows an example an attack against an interpreted environment with a Java executable. CHECKMATE can...Architectures ARM PPCx86 Java VM Java VMJava VM Java Executable Attack APPROVED FOR PUBLIC RELEASE; DISTRIBUTION UNLIMITED 33 a user executes “/usr/bin/wget...Server 1 - Administration Server 2 – Database ( mySQL ) Server 3 – Web server (Mongoose) Server 4 – File server (SSH) Server 5 – Email server

Setting Up Git Software Tool on Linux | High-Performance Computing | NREL

Science.gov Websites

system. Before you can get started using the github.nrel.gov git repos, you'll have to do some basic shell (SSH) keys created on those systems. If this is the case, for more information, see using the git Steps - Using a Remote Git Repository Now you have all the basic configuration for using git with a

Identification of genes differentially expressed by calorie restriction in the rotifer (Brachionus plicatilis).

PubMed

Oo, Aung Kyaw Swar; Kaneko, Gen; Hirayama, Makoto; Kinoshita, Shigeharu; Watabe, Shugo

2010-01-01

A monogonont rotifer Brachionus plicatilis has been widely used as a model organism for physiological, ecological studies and for ecotoxicology. Because of the availability of parthenogenetic mode of reproduction as well as its versatility to be used as live food in aquaculture, the population dynamic studies using the rotifer have become more important and acquired the priority over those using other species. Although many studies have been conducted to identify environmental factors that influence rotifer populations, the molecular mechanisms involved still remain to be elucidated. In this study, gene(s) differentially expressed by calorie restriction in the rotifer was analyzed, where a calorie-restricted group was fed 3 h day(-1) and a well-fed group fed ad libitum. A subtracted cDNA library from the calorie-restricted rotifer was constructed using suppression subtractive hybridization (SSH). One hundred sixty-three expressed sequence tags (ESTs) were identified, which included 109 putative genes with a high identity to known genes in the publicly available database as well as 54 unknown ESTs. After assembling, a total of 38 different genes were obtained among 109 ESTs. Further validation of expression by semi-quantitative reverse transcription-PCR showed that 29 out of the 38 genes obtained by SSH were up regulated by calorie restriction.

Identification of genes differentially expressed in association with acquired cisplatin resistance

PubMed Central

Johnsson, A; Zeelenberg, I; Min, Y; Hilinski, J; Berry, C; Howell, S B; Los, G

2000-01-01

The goal of this study was to identify genes whose mRNA levels are differentially expressed in human cells with acquired cisplatin (cDDP) resistance. Using the parental UMSCC10b head and neck carcinoma cell line and the 5.9-fold cDDP-resistant subline, UMSCC10b/Pt-S15, two suppressive subtraction hybridization (SSH) cDNA libraries were prepared. One library represented mRNAs whose levels were increased in the cDDP resistant variant (the UP library), the other one represented mRNAs whose levels were decreased in the resistant cells (the DOWN library). Arrays constructed with inserts recovered from these libraries were hybridized with SSH products to identify truly differentially expressed elements. A total of 51 cDNA fragments present in the UP library and 16 in the DOWN library met the criteria established for differential expression. The sequences of 87% of these cDNA fragments were identified in Genbank. Among the mRNAs in the UP library that were frequently isolated and that showed high levels of differential expression were cytochrome oxidase I, ribosomal protein 28S, elongation factor 1α, α-enolase, stathmin, and HSP70. The approach taken in this study permitted identification of many genes never before linked to the cDDP-resistant phenotype. © 2000 Cancer Research Campaign PMID:10993653

Contributing opportunistic resources to the grid with HTCondor-CE-Bosco

NASA Astrophysics Data System (ADS)

Weitzel, Derek; Bockelman, Brian

2017-10-01

The HTCondor-CE [1] is the primary Compute Element (CE) software for the Open Science Grid. While it offers many advantages for large sites, for smaller, WLCG Tier-3 sites or opportunistic clusters, it can be a difficult task to install, configure, and maintain the HTCondor-CE. Installing a CE typically involves understanding several pieces of software, installing hundreds of packages on a dedicated node, updating several configuration files, and implementing grid authentication mechanisms. On the other hand, accessing remote clusters from personal computers has been dramatically improved with Bosco: site admins only need to setup SSH public key authentication and appropriate accounts on a login host. In this paper, we take a new approach with the HTCondor-CE-Bosco, a CE which combines the flexibility and reliability of the HTCondor-CE with the easy-to-install Bosco. The administrators of the opportunistic resource are not required to install any software: only SSH access and a user account are required from the host site. The OSG can then run the grid-specific portions from a central location. This provides a new, more centralized, model for running grid services, which complements the traditional distributed model. We will show the architecture of a HTCondor-CE-Bosco enabled site, as well as feedback from multiple sites that have deployed it.

Genes up-regulated during red coloration in UV-B irradiated lettuce leaves.

PubMed

Park, Jong-Sug; Choung, Myoung-Gun; Kim, Jung-Bong; Hahn, Bum-Soo; Kim, Jong-Bum; Bae, Shin-Chul; Roh, Kyung-Hee; Kim, Yong-Hwan; Cheon, Choong-Ill; Sung, Mi-Kyung; Cho, Kang-Jin

2007-04-01

Molecular analysis of gene expression differences between green and red lettuce leaves was performed using the SSH method. BlastX comparisons of subtractive expressed sequence tags (ESTs) indicated that 7.6% of clones encoded enzymes involved in secondary metabolism. Such clones had a particularly high abundance of flavonoid-metabolism proteins (6.5%). Following SSH, 566 clones were rescreened for differential gene expression using dot-blot hybridization. Of these, 53 were found to overexpressed during red coloration. The up-regulated expression of six genes was confirmed by Northern blot analyses. The expression of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), and dihydroflavonol 4-reductase (DFR) genes showed a positive correlation with anthocyanin accumulation in UV-B-irradiated lettuce leaves; flavonoid 3',5'-hydroxylase (F3',5'H) and anthocyanidin synthase (ANS) were expressed continuously in both samples. These results indicated that the genes CHS, F3H, and DFR coincided with increases in anthocyanin accumulation during the red coloration of lettuce leaves. This study show a relationship between red coloration and the expression of up-regulated genes in lettuce. The subtractive cDNA library and EST database described in this study represent a valuable resource for further research for secondary metabolism in the vegetable crops.

Biophysical Mechanistic Modelling Quantifies the Effects of Plant Traits on Fire Severity: Species, Not Surface Fuel Loads, Determine Flame Dimensions in Eucalypt Forests

PubMed Central

Bedward, Michael; Penman, Trent D.; Doherty, Michael D.; Weber, Rodney O.; Gill, A. Malcolm; Cary, Geoffrey J.

2016-01-01

The influence of plant traits on forest fire behaviour has evolutionary, ecological and management implications, but is poorly understood and frequently discounted. We use a process model to quantify that influence and provide validation in a diverse range of eucalypt forests burnt under varying conditions. Measured height of consumption was compared to heights predicted using a surface fuel fire behaviour model, then key aspects of our model were sequentially added to this with and without species-specific information. Our fully specified model had a mean absolute error 3.8 times smaller than the otherwise identical surface fuel model (p < 0.01), and correctly predicted the height of larger (≥1 m) flames 12 times more often (p < 0.001). We conclude that the primary endogenous drivers of fire severity are the species of plants present rather than the surface fuel load, and demonstrate the accuracy and versatility of the model for quantifying this. PMID:27529789

Biophysical Mechanistic Modelling Quantifies the Effects of Plant Traits on Fire Severity: Species, Not Surface Fuel Loads, Determine Flame Dimensions in Eucalypt Forests.

PubMed

Zylstra, Philip; Bradstock, Ross A; Bedward, Michael; Penman, Trent D; Doherty, Michael D; Weber, Rodney O; Gill, A Malcolm; Cary, Geoffrey J

2016-01-01

The influence of plant traits on forest fire behaviour has evolutionary, ecological and management implications, but is poorly understood and frequently discounted. We use a process model to quantify that influence and provide validation in a diverse range of eucalypt forests burnt under varying conditions. Measured height of consumption was compared to heights predicted using a surface fuel fire behaviour model, then key aspects of our model were sequentially added to this with and without species-specific information. Our fully specified model had a mean absolute error 3.8 times smaller than the otherwise identical surface fuel model (p < 0.01), and correctly predicted the height of larger (≥1 m) flames 12 times more often (p < 0.001). We conclude that the primary endogenous drivers of fire severity are the species of plants present rather than the surface fuel load, and demonstrate the accuracy and versatility of the model for quantifying this.

The statistical characteristics of rain-generated stalks on water surface

NASA Astrophysics Data System (ADS)

Liu, Xinan; Liu, Ren; Duncan, James H.

2017-11-01

Laboratory measurements of the stalks generated by the impact of raindrops are performed in a 1.22-m-by-1.22-m water pool with a water depth of 0.3 m. Simulated raindrops are generated by an array of 22-gauge hypodermic needles that are attached to the bottom of an open-surface rain tank. The raindrop diameter is about 2.6 mm and the height of the rain tank above the water surface of the pool is varied from 1 m to 4.5 m to provide different impact velocities. A number of parameters, including the diameter, height and initial upward velocity of the center jets (stalks) are measured with a cinematic laser-induced- fluorescence technique. It is found that the maximum potential energy of the stalk and the joint distribution of stalk height and diameter are strongly correlated to the impact velocities of raindrops. Comparisons between the rain experiments and single drop impacts on a quiescent water surface are also shown.

The influence of surface roughness and turbulence on heat fluxes from an oil palm plantation in Jambi, Indonesia

NASA Astrophysics Data System (ADS)

June, Tania; Meijide, Ana; Stiegler, Christian; Purba Kusuma, Alan; Knohl, Alexander

2018-05-01

Oil palm plantations are expanding vastly in Jambi, resulted in altered surface roughness and turbulence characteristics, which may influence exchange of heat and mass. Micrometeorological measurements above oil palm canopy were conducted for the period 2013–2015. The oil palms were 12.5 years old, canopy height 13 meters and 1.5 years old canopy height 2.5 m. We analyzed the influence of surface roughness and turbulence strenght on heat (sensible and latent) fluxes by investigating the profiles and gradient of wind speed, and temperature, surface roughness (roughness length, zo, and zero plane displacement, d), and friction velocity u*. Fluxes of heat were calculated using profile similarity methods taking into account atmospheric stability calculated using Richardson number Ri and the generalized stability factor ζ. We found that roughness parameters (zo, d, and u*) directly affect turbulence in oil palm canopy and hence heat fluxes; they are affected by canopy height, wind speed and atmospheric stability. There is a negative trend of d towards air temperature above the oil palm canopy, indicating the effect of plant volume and height in lowering air temperature. We propose studying the relation between zero plane displacement d with a remote sensing vegetation index for scaling up this point based analysis.

The absolute dynamic ocean topography (ADOT)

NASA Astrophysics Data System (ADS)

Bosch, Wolfgang; Savcenko, Roman

The sea surface slopes relative to the geoid (an equipotential surface) basically carry the in-formation on the absolute velocity field of the surface circulation. Pure oceanographic models may remain unspecific with respect to the absolute level of the ocean topography. In contrast, the geodetic approach to estimate the ocean topography as difference between sea level and the geoid gives by definition an absolute dynamic ocean topography (ADOT). This approach requires, however, a consistent treatment of geoid and sea surface heights, the first being usually derived from a band limited spherical harmonic series of the Earth gravity field and the second observed with much higher spectral resolution by satellite altimetry. The present contribution shows a procedure for estimating the ADOT along the altimeter profiles, preserving as much sea surface height details as the consistency w.r.t. the geoid heights will allow. The consistent treatment at data gaps and the coast is particular demanding and solved by a filter correction. The ADOT profiles are inspected for their innocent properties towards the coast and compared to external estimates of the ocean topography or the velocity field of the surface circulation as derived, for example, by ARGO floats.

3D reconstruction of the porous microstructure of Al2O3-coatings based on sequentially revealed surface data

NASA Astrophysics Data System (ADS)

Loftfield, Nina; Kästner, Markus; Reithmeier, Eduard

2018-06-01

Local and global liquid transport properties correlate strongly with the morphology of porous materials. Therefore, by characterizing the porous network information is indirectly gained on the materials properties. Properties like the open-porosity are easily accessible with techniques like mercury porosimetry. However, the 3D image reconstruction, destructive or non-destructive, holds advantages like an accurate spatially resolved representation of the investigated material. Common 3D data acquisition is done by x-ray microtomography or a combination of focused ion beam based milling and scanning electron microscopy. In this work a reconstruction approach similar to the latter one is implemented. The porous network is reconstructed based on an alternating process of milling the surface by fly cutting and measuring the surface data with a confocal laser scanning microscope. This has the benefit of reconstructing the pore network on the basis of surface height data, measuring the structure boundaries directly. The stack of milled surface height data needs to be registered and the pore structure to be segmented. The segmented pore structure is connected throughout each height layer and afterwards meshed. The investigated materials are porous surface coatings of aluminum oxide for the usage in tribological pairings.

Upwelling Dynamic Based on Satellite and INDESO Data in the Flores Sea

NASA Astrophysics Data System (ADS)

Kurniawan, Reski; Suriamihardja, D. A.; Hamzah Assegaf, Alimuddin

2018-03-01

Upwelling phenomenon is crucial to be forecasted, mainly concerning the information of potential fishery areas. Utilization of calibrated model for recorded upwelling such as INDESO gives benefit for historical result up to the present time. The aim of this study is to estimate areas and seasons of upwelling occurrences in the Flores Sea using data assimilation of satellite and modeling result. This study uses sea surface temperature, chlorophyll-a data from level 3 of MODIS image and sea surface height from satellite Jason-2 monthly for three years (2014-2016) and INDESO model data for sea surface temperature, sea surface height, and chlorophyll-a daily for three years (2014-2016). The upwelling is indicated by declining of sea surface temperature, sea surface height and increasing of chlorophyll-a. Verification is conducted by comparing the model result with recorded MODIS satellite image. The result shows that the area of southern Makassar Strait having occurrences of upwelling phenomenon every year starting in June, extended to July and August. The strongest upwelling occurred in 2015 covering more or less the area of 23,000 km2. The relation of monthly data of satellite has significantly correlated with daily data of INDESO model

49 CFR 572.102 - Drop test.

Code of Federal Regulations, 2014 CFR

2014-10-01

... surface when the midsagittal plane is vertical. (4) Drop the headform from the specified height by means... test. (a) When the headform is dropped from a height of 14.8 inches in accordance with paragraph (b) of...

Development of a Mathematical Model to Assess the Accuracy of Difference between Geodetic Heights

ERIC Educational Resources Information Center

Gairabekov, Ibragim; Kliushin, Evgenii; Gayrabekov, Magomed-Bashir; Ibragimova, Elina; Gayrabekova, Amina

2016-01-01

The article includes the results of theoretical studies of the accuracy of geodetic height survey and marks points on the Earth's surface using satellite technology. The dependence of the average square error of geodetic heights difference survey from the distance to the base point was detected. It is being proved that by using satellite…

Spatial height directed microfluidic synthesis of transparent inorganic upconversion nano film

NASA Astrophysics Data System (ADS)

Liu, Xiaoxia; Zhu, Cheng; Liao, Wei; Jin, Junyang; Ni, Yaru; Lu, Chunhua; Xu, Zhongzi

2017-11-01

A microfluidic-based synthesis of an inorganic upconversion nano film has been developed with a large area of dense-distributed NaYF4 crystal grains in a silica glass micro-reactor and the film exhibits high transparence, strong upconversion luminescence and robust adhesion with the substrate. The spatial heights of micro-reactors are tuned between 31 and 227 mm, which can regulate flow regimes. The synergistic effect of spatial height and fluid regime is put forward, which influences diffusion paths and assembly ways of different precursor molecules and consequently directs final distributions and morphologies of crystal grains, as well as optical properties due to diversity of surface and thickness of films. The spatial height of 110 mm is advantageous for high transmittance of upconversion film due to the flat surface and appropriate film thickness of 67 nm. The height of 150 mm is in favor of uniform distribution of upconversion fluorescence and achieving the strongest fluorescence due to minimized optical loss. Such a transparent upconversion film with a large area of uniform distribution is promising to promote the application of upconversion materials and spatial height directed microfluidic regime have a certain significance on many microfluidic synthesis.

Dual frequency scatterometer measurement of ocean wave height

NASA Technical Reports Server (NTRS)

Johnson, J. W.; Jones, W. L.; Swift, C. T.; Grantham, W. L.; Weissman, D. E.

1975-01-01

A technique for remotely measuring wave height averaged over an area of the sea surface was developed and verified with a series of aircraft flight experiments. The measurement concept involves the cross correlation of the amplitude fluctuations of two monochromatic reflected signals with variable frequency separation. The signal reflected by the randomly distributed specular points on the surface is observed in the backscatter direction at nadir incidence angle. The measured correlation coefficient is equal to the square of the magnitude of the characteristic function of the specular point height from which RMS wave height can be determined. The flight scatterometer operates at 13.9 GHz and 13.9 - delta f GHz with a maximum delta f of 40 MHz. Measurements were conducted for low and moderate sea states at altitudes of 2, 5, and 10 thousand feet. The experimental results agree with the predicted decorrelation with frequency separation and with off-nadir incidence angle.

Development of large Area Covering Height Model

NASA Astrophysics Data System (ADS)

Jacobsen, K.

2014-04-01

Height information is a basic part of topographic mapping. Only in special areas frequent update of height models is required, usually the update cycle is quite lower as for horizontal map information. Some height models are available free of charge in the internet; for commercial height models a fee has to be paid. Mostly digital surface models (DSM) with the height of the visible surface are given and not the bare ground height, as required for standard mapping. Nevertheless by filtering of DSM, digital terrain models (DTM) with the height of the bare ground can be generated with the exception of dense forest areas where no height of the bare ground is available. These height models may be better as the DTM of some survey administrations. In addition several DTM from national survey administrations are classified, so as alternative the commercial or free of charge available information from internet can be used. The widely used SRTM DSM is available also as ACE-2 GDEM corrected by altimeter data for systematic height errors caused by vegetation and orientation errors. But the ACE-2 GDEM did not respect neighbourhood information. With the worldwide covering TanDEM-X height model, distributed starting 2014 by Airbus Defence and Space (former ASTRIUM) as WorldDEM, higher level of details and accuracy is reached as with other large area covering height models. At first the raw-version of WorldDEM will be available, followed by an edited version and finally as WorldDEM-DTM a height model of the bare ground. With 12 m spacing and a relative standard deviation of 1.2 m within an area of 1° x 1° an accuracy and resolution level is reached, satisfying also for larger map scales. For limited areas with the HDEM also a height model with 6 m spacing and a relative vertical accuracy of 0.5 m can be generated on demand. By bathymetric LiDAR and stereo images also the height of the sea floor can be determined if the water has satisfying transparency. Another method of getting bathymetric height information is an analysis of the wave structure in optical and SAR-images. An overview about the absolute and relative accuracy, the consistency, error distribution and other characteristics as influence of terrain inclination and aspects is given. Partially by post processing the height models can or have to be improved.

Structured illumination assisted microdeflectometry with optical depth scanning capability

PubMed Central

Lu, Sheng-Huei; Hua, Hong

2018-01-01

Microdeflectometry is a powerful noncontact tool for measuring nanometer defects on a freeform surface. However, it requires a time-consuming process to take measurements at different depths for an extended depth of field (EDOF) and lacks surface information for integrating the measured gradient data to height. We propose an optical depth scanning technique to speed up the measurement process and introduce the structured illumination technique to efficiently determine the focused data among 3D observation and provide surface orientations for reconstructing an unknown surface shape. We demonstrated 3D measurements with an equivalent surface height sensitivity of 7.21 nm and an EDOF of at least 250 μm, which is 15 times that of the diffraction limited depth range. PMID:27607986

Steering of Upper Ocean Currents and Fronts by the Topographically Constrained Abyssal Circulation

DTIC Science & Technology

2008-07-06

a) Mean surface dynamic height relative to 1000 m from version 2.5 of the Generalized Digital Environmental Model ( GDEM ) oceanic climatology, an...NLOM simulations in comparison to the mean surface dynamic height with respect to 1000 m from the Generalized Digital Environmental Model ( GDEM ...the Kuroshio pathway east of Japan, giving much better agreement with the pathway in the GDEM climatology. Dynamics of the topographic impact on

How High is that Dune? A Comparison of Methods Used to Constrain the Morphometry of Aeolian Bedforms on Mars

NASA Technical Reports Server (NTRS)

Bourke, M.; Balme, M.; Beyer, R. A.; Williams, K. K.

2004-01-01

Methods traditionally used to estimate the relative height of surface features on Mars include: photoclinometry, shadow length and stereography. The MOLA data set enables a more accurate assessment of the surface topography of Mars. However, many small-scale aeolian bedforms remain below the sample resolution of the MOLA data set. In response to this a number of research teams have adopted and refined existing methods and applied them to high resolution (2-6 m/pixel) narrow angle MOC satellite images. Collectively, the methods provide data on a range of morphometric parameters (many not previously available for dunes on Mars). These include dune height, width, length, surface area, volume, longitudinal and cross profiles). This data will facilitate a more accurate analysis of aeolian bedforms on Mars. In this paper we undertake a comparative analysis of methods used to determine the height of aeolian dunes and ripples.

Comparison of hydrogen and deuterium adsorption on Pd(100).

PubMed

Gladys, M J; Kambali, I; Karolewski, M A; Soon, A; Stampfl, C; O'Connor, D J

2010-01-14

Low energy ion recoil spectroscopy is a powerful technique for the determination of adsorbate position on metal surfaces. In this study, this technique is employed to compare the adsorption sites of hydrogen and deuterium on Pd(100) by detection of either H or D recoil ions produced by Ne(+) bombardment. Comparisons of experimental and Kalypso simulated azimuthal yield distributions show that, at room temperature, both hydrogen isotopes are adsorbed in the fourfold hollow site of Pd(100), however, at different heights above the surface (H-0.20 A and D-0.25 A). The adsorbates remain in the hollow site at all temperatures up to 383 K even though they move up to 0.40-0.45 A above the surface. Density functional theory calculations show a similar coverage dependent adsorption height for both H and D and confirm a real difference between the H and D adsorption heights based on zero point energies.

The Effect of Furnishing on Perceived Spatial Dimensions and Spaciousness of Interior Space

PubMed Central

von Castell, Christoph; Oberfeld, Daniel; Hecht, Heiko

2014-01-01

Despite the ubiquity of interior space design, there is virtually no scientific research on the influence of furnishing on the perception of interior space. We conducted two experiments in which observers were asked to estimate the spatial dimensions (size of the room dimensions in meters and centimeters) and to judge subjective spaciousness of various rooms. Experiment 1 used true-to-scale model rooms with a square surface area. Furnishing affected both the perceived height and the spaciousness judgments. The furnished room was perceived as higher but less spacious. In Experiment 2, rooms with different square surface areas and constant physical height were presented in virtual reality. Furnishing affected neither the perceived spatial dimensions nor the perceived spaciousness. Possible reasons for this discrepancy, such as the influence of the presentation medium, are discussed. Moreover, our results suggest a compression of perceived height and depth with decreasing surface area of the room. PMID:25409456

The effect of furnishing on perceived spatial dimensions and spaciousness of interior space.

PubMed

von Castell, Christoph; Oberfeld, Daniel; Hecht, Heiko

2014-01-01

Despite the ubiquity of interior space design, there is virtually no scientific research on the influence of furnishing on the perception of interior space. We conducted two experiments in which observers were asked to estimate the spatial dimensions (size of the room dimensions in meters and centimeters) and to judge subjective spaciousness of various rooms. Experiment 1 used true-to-scale model rooms with a square surface area. Furnishing affected both the perceived height and the spaciousness judgments. The furnished room was perceived as higher but less spacious. In Experiment 2, rooms with different square surface areas and constant physical height were presented in virtual reality. Furnishing affected neither the perceived spatial dimensions nor the perceived spaciousness. Possible reasons for this discrepancy, such as the influence of the presentation medium, are discussed. Moreover, our results suggest a compression of perceived height and depth with decreasing surface area of the room.

Shielding techniques tackle EMI excesses. V - EMI shielding

NASA Astrophysics Data System (ADS)

Grant, P.

1982-10-01

The utilization of shielding gaskets in EMI design is presented in terms of seam design, gasket design, groove design, and fastener spacing. The main function of seam design is to minimize the coupling efficiency of a seam, and for effective shielding, seam design should include mating surfaces which are as flat as possible, and a flange width at least five times the maximum anticipated separation between mating surfaces. Seam surface contact with a gasket should be firm, continuous, and uniform. Gasket height, closure pressure, and compression set as a function of the applied pressure parameters are determined using compression/deflection curves. Environmental seal requirements are given and the most common materials used are neoprene, silicone, butadiene-acrylonitrile, and natural rubber. Groove design is also discussed, considering gasket heights and cross-sectional areas. Finally, fastener spacing is considered, by examining deflection as a percentage of gasket height.

NASA/French Satellite Data Reveal New Details of Tsunami

NASA Image and Video Library

2005-01-12

Displayed in blue color is the height of sea surface (shown in blue) measured by the Jason satellite two hours after the initial magnitude 9 earthquake hit the region (shown in red) southwest of Sumatra on December 26, 2004. The data were taken by a radar altimeter onboard the satellite along a track traversing the Indian Ocean when the tsunami waves had just filled the entire Bay of Bengal (see the model simulation inset image). The data shown are the changes of sea surface height from previous observations made along the same track 20-30 days before the earthquake, reflecting the signals of the tsunami waves. The maximum height of the leading wave crest was about 50 cm (or 1.6 ft), followed by a trough of sea surface depression of 40 cm. The directions of wave propagation along the satellite track are shown by the blue arrows. http://photojournal.jpl.nasa.gov/catalog/PIA07219

The Influence of Artificial Cervical Disc Prosthesis Height on the Cervical Biomechanics: A Finite Element Study.

PubMed

Yuan, Wei; Zhang, Haiping; Zhou, Xiaoshu; Wu, Weidong; Zhu, Yue

2018-05-01

Artificial cervical disc replacement is expected to maintain normal cervical biomechanics. At present, the effect of the Prestige LP prosthesis height on cervical biomechanics has not been thoroughly studied. This finite element study of the cervical biomechanics aims to predict how the parameters, like range of motion (ROM), adjacent intradiscal pressure, facet joint force, and bone-implant interface stress, are affected by different heights of Prestige LP prostheses. The finite element model of intact cervical spine (C3-C7) was obtained from our previous study, and the model was altered to implant Prestige LP prostheses at the C5-C6 level. The effects of the height of 5, 6, and 7 mm prosthesis replacement on ROM, adjacent intradiscal pressure, facet joint force, as well as the distribution of bone-implant interface stress were examined. ROM, adjacent intradiscal pressure, and facet joint force increased with the prosthesis height, whereas ROM and facet joint force decreased at C5-C6. The maximal stress on the inferior surface of the prostheses was greater than that on the superior surface, and the stresses increased with the prosthesis height. The biomechanical changes were slightly affected by the height of 5 and 6 mm prostheses, but were strongly affected by the 7-mm prosthesis. An appropriate height of the Prestige LP prosthesis can preserve normal ROM, adjacent intradiscal pressure, and facet joint force. Prostheses with a height of ≥2 mm than normal can lead to marked changes in the cervical biomechanics and bone-implant interface stress. Copyright © 2018 Elsevier Inc. All rights reserved.

A tool for NDVI time series extraction from wide-swath remotely sensed images

NASA Astrophysics Data System (ADS)

Li, Zhishan; Shi, Runhe; Zhou, Cong

2015-09-01

Normalized Difference Vegetation Index (NDVI) is one of the most widely used indicators for monitoring the vegetation coverage in land surface. The time series features of NDVI are capable of reflecting dynamic changes of various ecosystems. Calculating NDVI via Moderate Resolution Imaging Spectrometer (MODIS) and other wide-swath remotely sensed images provides an important way to monitor the spatial and temporal characteristics of large-scale NDVI. However, difficulties are still existed for ecologists to extract such information correctly and efficiently because of the problems in several professional processes on the original remote sensing images including radiometric calibration, geometric correction, multiple data composition and curve smoothing. In this study, we developed an efficient and convenient online toolbox for non-remote sensing professionals who want to extract NDVI time series with a friendly graphic user interface. It is based on Java Web and Web GIS technically. Moreover, Struts, Spring and Hibernate frameworks (SSH) are integrated in the system for the purpose of easy maintenance and expansion. Latitude, longitude and time period are the key inputs that users need to provide, and the NDVI time series are calculated automatically.

Fractal characterization and wettability of ion treated silicon surfaces

NASA Astrophysics Data System (ADS)

Yadav, R. P.; Kumar, Tanuj; Baranwal, V.; Vandana, Kumar, Manvendra; Priya, P. K.; Pandey, S. N.; Mittal, A. K.

2017-02-01

Fractal characterization of surface morphology can be useful as a tool for tailoring the wetting properties of solid surfaces. In this work, rippled surfaces of Si (100) are grown using 200 keV Ar+ ion beam irradiation at different ion doses. Relationship between fractal and wetting properties of these surfaces are explored. The height-height correlation function extracted from atomic force microscopic images, demonstrates an increase in roughness exponent with an increase in ion doses. A steep variation in contact angle values is found for low fractal dimensions. Roughness exponent and fractal dimensions are found correlated with the static water contact angle measurement. It is observed that after a crossover of the roughness exponent, the surface morphology has a rippled structure. Larger values of interface width indicate the larger ripples on the surface. The contact angle of water drops on such surfaces is observed to be lowest. Autocorrelation function is used for the measurement of ripple wavelength.

Foot roll-over evaluation based on 3D dynamic foot scan.

PubMed

Samson, William; Van Hamme, Angèle; Sanchez, Stéphane; Chèze, Laurence; Van Sint Jan, Serge; Feipel, Véronique

2014-01-01

Foot roll-over is commonly analyzed to evaluate gait pathologies. The current study utilized a dynamic foot scanner (DFS) to analyze foot roll-over. The right feet of ten healthy subjects were assessed during gait trials with a DFS system integrated into a walkway. A foot sole picture was computed by vertically projecting points from the 3D foot shape which were lower than a threshold height of 15 mm. A 'height' value of these projected points was determined; corresponding to the initial vertical coordinates prior to projection. Similar to pedobarographic analysis, the foot sole picture was segmented into anatomical regions of interest (ROIs) to process mean height (average of height data by ROI) and projected surface (area of the projected foot sole by ROI). Results showed that these variables evolved differently to plantar pressure data previously reported in the literature, mainly due to the specificity of each physical quantity (millimeters vs Pascals). Compared to plantar pressure data arising from surface contact by the foot, the current method takes into account the whole plantar aspect of the foot, including the parts that do not make contact with the support surface. The current approach using height data could contribute to a better understanding of specific aspects of foot motion during walking, such as plantar arch height and the windlass mechanism. Results of this study show the underlying method is reliable. Further investigation is required to validate the DFS measurements within a clinical context, prior to implementation into clinical practice. Copyright © 2013 Elsevier B.V. All rights reserved.

Climbing ability of teneral and sclerotized adult bed bugs and assessment of adhesive properties of the exoskeletal fluid using atomic force microscopy

PubMed Central

Zungoli, Patricia A.; Bridges, William C.; Ellis, Brittany R.; Song, Jinbo

2017-01-01

We observed that teneral adults (<1 h post-molt) of Cimex lectularius L. appeared more adept at climbing a smooth surface compared to sclerotized adults. Differences in climbing ability on a smooth surface based on sclerotization status were quantified by measuring the height to which bed bugs climbed when confined within a glass vial. The average maximum height climbed by teneral (T) bed bugs (n = 30, height climbed = 4.69 cm) differed significantly (P< 0.01) from recently sclerotized (RS) bed bugs (n = 30, height climbed = 1.73 cm at ~48 h post molt), sclerotized group 1 (S1) bed bugs (n = 30, S1 = 2.42 cm at >72 h), and sclerotized group 2 (S2) bed bugs (n = 30, height climbed = 2.64 cm at >72 h post molt). When heights from all climbing events were summed, teneral bed bugs (650.8 cm climbed) differed significantly (P< 0.01) from recently sclerotized (82 cm climbed) and sclerotized (group 1 = 104.6 cm climbed, group 2 = 107.8 cm climbed) bed bugs. These findings suggested that the external surface of teneral bed bug exoskeletons possess an adhesive property. Using atomic force microscopy (AFM), we found that adhesion force of an exoskeletal (presumably molting) fluid decreased almost five-fold from 88 to 17 nN within an hour of molting. Our findings may have implications for laboratory safety and the effectiveness of bed bug traps, barriers, and biomimetic-based adhesives. PMID:29244819

Primary and Secondary Controls on Measurements of Forest Height Using Large-Footprint Lidar at the Hubbard Brook LTER

NASA Technical Reports Server (NTRS)

Knox, Robert G.; Blair, J. Bryan; Schwarz, Paul A.; Hofton, Michelle A.; Dubayah, Ralph; Smith, David E. (Technical Monitor)

2000-01-01

On September 26, 1999, we mapped canopy structure over 90% of the Hubbard Brook Experimental Forest in White Mountain National Forest, New Hampshire, using the Laser Vegetation Imaging Sensor (LVIS). This airborne instrument was configured to emulate data expected from the Vegetation Canopy Lidar (VCL) space mission. We compared above ground heights of the tallest surfaces detected by lidar with average forest canopy heights estimated from tree-based measurements in or near 346 0.05 ha plots (made in autumn of 1997 and 1998). Vegetation heights had by far the predominant influence on lidar top heights, but with this large data set we were able to measure two significant secondary effects: those of steepness or slope of the underlying terrain and of tree crown form. The size of the slope effect was intermediate between that expected from models of homogeneous canopy layers and for solitary tree crowns. The first detected surfaces were also proportionately taller for plots with more basal area in broad leaved northern hardwoods than for mostly coniferous plots. We expected this because of the contrast between the shapes of cumulative distributions of surface area for elliptical or hemi-elliptical tree crowns and those for conical crowns. Correcting for these secondary effects, when appropriate data are available for calibration, may improve vegetation structure estimates in regional studies using VCL or similar lidar data sources.

Imaging nanoclusters in the constant height mode of the dynamic SFM.

PubMed

Barth, Clemens; Pakarinen, Olli H; Foster, Adam S; Henry, Claude R

2006-04-14

For the first time, high quality images of metal nanoclusters which were recorded in the constant height mode of a dynamic scanning force microscope (dynamic SFM) are shown. Surfaces of highly ordered pyrolytic graphite (HOPG) were used as a test substrate since metal nanoclusters with well defined and symmetric shapes can be created by epitaxial growth. We performed imaging of gold clusters with sizes between 5 and 15 nm in both scanning modes, constant Δf mode and constant height mode, and compared the image contrast. We notice that clusters in constant height images appear much sharper, and exhibit more reasonable lateral shapes and sizes in comparison to images recorded in the constant Δf mode. With the help of numerical simulations we show that only a microscopically small part of the tip apex (nanotip) is probably the main contributor for the image contrast formation. In principle, the constant height mode can be used for imaging surfaces of any material, e.g. ionic crystals, as shown for the system Au/NaCl(001).

Correlation of film morphology and defect content with the charge-carrier transport in thin-film transistors based on ZnO nanoparticles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Polster, S.; Jank, M. P. M.; Frey, L.

2016-01-14

The correlation of defect content and film morphology with the charge-carrier transport in field-effect devices based on zinc oxide nanoparticles was investigated. Changes in the defect content and the morphology were realized by annealing and sintering of the nanoparticle thin films. Temperature-dependent electrical measurements reveal that the carrier transport is thermally activated for both the unsintered and sintered thin films. Reduced energetic barrier heights between the particles have been determined after sintering. Additionally, the energetic barrier heights between the particles can be reduced by increasing the drain-to-source voltage and the gate-to-source voltage. The changes in the barrier height are discussedmore » with respect to information obtained by scanning electron microscopy and photoluminescence measurements. It is found that a reduction of surface states and a lower roughness at the interface between the particle layer and the gate dielectric lead to lower barrier heights. Both surface termination and layer morphology at the interface affect the barrier height and thus are the main criteria for mobility improvement and device optimization.« less

An Analysis of the Computer Security Ramifications of Weakened Asymmetric Cryptographic Algorithms

DTIC Science & Technology

2012-06-01

OpenVPN (Yonan). TLS (and by extension SSL) obviously rely on encryption to provide the confidentiality, integrity and authentication services it...Secure Shell (SSH) Transport Layer Protocol.” IETF, Jan. 2006. <tools.ietf.org/html/rfc4253> Yonan, James, and Mattock. " OpenVPN ." SourceForge...11 May 2012. <http://sourceforge.net/projects/ openvpn /> 92 REPORT DOCUMENTATION PAGE Form Approved OMB No. 074-0188 The public reporting

Dynamic Policy Evaluation for Containing Network Attacks (DEFCN)

DTIC Science & Technology

2005-03-01

API reads policy information from the target users ".ssh" directory and applies those policies to determine whether remote login is allowed to a...types of events that can be controlled by the threshold detectors and reported by the GAA-API include the number of failed login attempts within a given...other uses of the system. Emerald architecture [2] includes a data- collection module integrated with Apache Web server. The module extracts the request

Methods for monitoring multiple gene expression

DOEpatents

Berka, Randy; Bachkirova, Elena; Rey, Michael

2013-10-01

The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

System Connection via SSH Gateway | High-Performance Computing | NREL

Science.gov Websites

;@peregrine.hpc.nrel.gov First time logging in? If this is the first time you've logged in with your new account, you will password. You will be prompted to enter it a second time, then you will be logged off. Just reconnect with your HPC password at any time, you can simply use the passwd command. Remote Users If you're connecting

Trans-polyacetylene within the extended tight-binding picture and evidence for next-nearest neighbour hopping from the dispersion of interband transition edges

NASA Astrophysics Data System (ADS)

Drechsler, S. L.; Heiner, E.; Osipov, V. A.

1986-11-01

The influence of additional non-nearest neighbour hopping processes is investigated in a SSH-like model. The enhanced splitting of absorption peaks due to Π-Π ∗ interband transitions (deduced from new electron loss data of Fink and Leising /17/) can be explained by a reasonable value of the next-nearest neighbour hopping integral |t 2| ≈0.05 t 0.

Methods for monitoring multiple gene expression

DOEpatents

Berka, Randy [Davis, CA; Bachkirova, Elena [Davis, CA; Rey, Michael [Davis, CA

2012-05-01

The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

Methods for monitoring multiple gene expression

DOEpatents

Berka, Randy [Davis, CA; Bachkirova, Elena [Davis, CA; Rey, Michael [Davis, CA

2008-06-01

The present invention relates to methods for monitoring differential expression of a plurality of genes in a first filamentous fungal cell relative to expression of the same genes in one or more second filamentous fungal cells using microarrays containing Trichoderma reesei ESTs or SSH clones, or a combination thereof. The present invention also relates to computer readable media and substrates containing such array features for monitoring expression of a plurality of genes in filamentous fungal cells.

Physical Limits on Hmax, the Maximum Height of Glaciers and Ice Sheets

NASA Astrophysics Data System (ADS)

Lipovsky, B. P.

2017-12-01

The longest glaciers and ice sheets on Earth never achieve a topographic relief, or height, greater than about Hmax = 4 km. What laws govern this apparent maximum height to which a glacier or ice sheet may rise? Two types of answer appear possible: one relating to geological process and the other to ice dynamics. In the first type of answer, one might suppose that if Earth had 100 km tall mountains then there would be many 20 km tall glaciers. The counterpoint to this argument is that recent evidence suggests that glaciers themselves limit the maximum height of mountain ranges. We turn, then, to ice dynamical explanations for Hmax. The classical ice dynamical theory of Nye (1951), however, does not predict any break in scaling to give rise to a maximum height, Hmax. I present a simple model for the height of glaciers and ice sheets. The expression is derived from a simplified representation of a thermomechanically coupled ice sheet that experiences a basal shear stress governed by Coulomb friction (i.e., a stress proportional to the overburden pressure minus the water pressure). I compare this model to satellite-derived digital elevation map measurements of glacier surface height profiles for the 200,000 glaciers in the Randolph Glacier Inventory (Pfeffer et al., 2014) as well as flowlines from the Greenland and Antarctic Ice Sheets. The simplified model provides a surprisingly good fit to these global observations. Small glaciers less than 1 km in length are characterized by having negligible influence of basal melt water, cold ( -15C) beds, and high surface slopes ( 30 deg). Glaciers longer than a critical distance 30km are characterized by having an ice-bed interface that is weakened by the presence of meltwater and is therefore not capable of supporting steep surface slopes. The simplified model makes predictions of ice volume change as a function of surface temperature, accumulation rate, and geothermal heat flux. For this reason, it provides insights into both past and future global ice volume changes.

Surface-electrode point Paul trap

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kim, Tony Hyun; Herskind, Peter F.; Chuang, Isaac L.

2010-10-15

We present a model as well as experimental results for a surface electrode radiofrequency Paul trap that has a circular electrode geometry well suited for trapping single ions and two-dimensional planar ion crystals. The trap design is compatible with microfabrication and offers a simple method by which the height of the trapped ions above the surface may be changed in situ. We demonstrate trapping of single {sup 88}Sr{sup +} ions over an ion height range of 200-1000 {mu}m for several hours under Doppler laser cooling and use these to characterize the trap, finding good agreement with our model.

High-Resolution Forest Canopy Height Estimation in an African Blue Carbon Ecosystem

NASA Technical Reports Server (NTRS)

Lagomasino, David; Fatoyinbo, Temilola; Lee, Seung-Kuk; Simard, Marc

2015-01-01

Mangrove forests are one of the most productive and carbon dense ecosystems that are only found at tidally inundated coastal areas. Forest canopy height is an important measure for modeling carbon and biomass dynamics, as well as land cover change. By taking advantage of the flat terrain and dense canopy cover, the present study derived digital surface models (DSMs) using stereophotogrammetric techniques on high-resolution spaceborne imagery (HRSI) for southern Mozambique. A mean-weighted ground surface elevation factor was subtracted from the HRSI DSM to accurately estimate the canopy height in mangrove forests in southern Mozambique. The mean and H100 tree height measured in both the field and with the digital canopy model provided the most accurate results with a vertical error of 1.18-1.84 m, respectively. Distinct patterns were identified in the HRSI canopy height map that could not be discerned from coarse shuttle radar topography mission canopy maps even though the mode and distribution of canopy heights were similar over the same area. Through further investigation, HRSI DSMs have the potential of providing a new type of three-dimensional dataset that could serve as calibration/validation data for other DSMs generated from spaceborne datasets with much larger global coverage. HSRI DSMs could be used in lieu of Lidar acquisitions for canopy height and forest biomass estimation, and be combined with passive optical data to improve land cover classifications.

Coiling of viscous jets

NASA Astrophysics Data System (ADS)

Ribe, Neil M.

2004-11-01

A stream of viscous fluid falling from a sufficient height onto a surface forms a series of regular coils. I use a numerical model for a deformable fluid thread to predict the coiling frequency as a function of the thread's radius, the flow rate, the fall height, and the fluid viscosity. Three distinct modes of coiling can occur: viscous (e.g. toothpaste), gravitational (honey falling from a moderate height) and inertial (honey falling from a great height). When inertia is significant, three states of steady coiling with different frequencies can exist over a range of fall heights. The numerically predicted coiling frequencies agree well with experimental measurements in the inertial coiling regime.

Phase analysis for three-dimensional surface reconstruction of apples using structured-illumination reflectance imaging

NASA Astrophysics Data System (ADS)

Lu, Yuzhen; Lu, Renfu

2017-05-01

Three-dimensional (3-D) shape information is valuable for fruit quality evaluation. This study was aimed at developing phase analysis techniques for reconstruction of the 3-D surface of fruit from the pattern images acquired by a structuredillumination reflectance imaging (SIRI) system. Phase-shifted sinusoidal patterns, distorted by the fruit geometry, were acquired and processed through phase demodulation, phase unwrapping and other post-processing procedures to obtain phase difference maps relative to the phase of a reference plane. The phase maps were then transformed into height profiles and 3-D shapes in a world coordinate system based on phase-to-height and in-plane calibrations. A reference plane-based approach, coupled with the curve fitting technique using polynomials of order 3 or higher, was utilized for phase-to-height calibrations, which achieved superior accuracies with the root-mean-squared errors (RMSEs) of 0.027- 0.033 mm for a height measurement range of 0-91 mm. The 3rd-order polynomial curve fitting technique was further tested on two reference blocks with known heights, resulting in relative errors of 3.75% and 4.16%. In-plane calibrations were performed by solving a linear system formed by a number of control points in a calibration object, which yielded a RMSE of 0.311 mm. Tests of the calibrated system for reconstructing the surface of apple samples showed that surface concavities (i.e., stem/calyx regions) could be easily discriminated from bruises from the phase difference maps, reconstructed height profiles and the 3-D shape of apples. This study has laid a foundation for using SIRI for 3-D shape measurement, and thus expanded the capability of the technique for quality evaluation of horticultural products. Further research is needed to utilize the phase analysis techniques for stem/calyx detection of apples, and optimize the phase demodulation and unwrapping algorithms for faster and more reliable detection.

Effect of end-wall riblets on radial turbine performance

NASA Astrophysics Data System (ADS)

Khader, M. A.; Sayma, A. I.

2017-08-01

This paper presents a detailed study of the impact of manufacturing residual riblets at the rotor hub surface of a radial inflow turbine on the flow within the rotor passages and their contribution to drag reduction. Numerical analysis has been used to study the effects of those features at design point conditions. Riblets with different height and spacing have been examined to determine the riblet geometry where the maximum drag reduction is achieved. The relative height of the riblets to rotor inlet blade height was introduced to generalise the results. At the end of this study the results were compared with the available data in literature. It was found that the introduction of riblets could reduce the wall shear stress at the hub surface, while they contribute to increasing the streamwise vorticity within the rotor passage. For the geometries tested, the minimum drag was achieved using riblets with relative height hrel = 2.5% equivalent to 19.3 wall units. The results revealed that the spacing between riblets have a minor effect on their performance, this is due to the size of the streamwise vortex above the hub surface which will be discussed in this work.

Comprehensive Study of Plasma-Wall Sheath Transport Phenomena

DTIC Science & Technology

2016-10-26

function of the applied thermo-mechanical stress. An experiment was designed to test whether and how the process of plasma erosion might depend on ...of exposed surface, a, b) pretest height and laser image, c, d) post - test height and laser image. For the following analysis, a curve fit of the...normal to the ion beam. However, even with a one -dimensional simulation, features of a similar depth and profile to the post - test surface develop

Formation Mechanism of Surface Crack in Low Pressure Casting of A360 Alloy

NASA Astrophysics Data System (ADS)

Liu, Shan-Guang; Cao, Fu-Yang; Ying, Tao; Zhao, Xin-Yi; Liu, Jing-Shun; Shen, Hong-Xian; Guo, Shu; Sun, Jian-Fei

2017-12-01

A surface crack defect is normally found in low pressure castings of Al alloy with a sudden contraction structure. To further understand the formation mechanism of the defect, the mold filling process is simulated by a two-phase flow model. The experimental results indicate that the main reason for the defect deformation is the mismatching between the height of liquid surface in the mold and pressure in the crucible. In the case of filling, a sudden contraction structure with an area ratio smaller than 0.5 is obtained, and the velocity of the liquid front increases dramatically with the influence of inertia. Meanwhile, the pressurizing speed in the crucible remains unchanged, resulting in the pressure not being able to support the height of the liquid level. Then the liquid metal flows back to the crucible and forms a relatively thin layer solidification shell on the mold wall. With the increasing pressure in the crucible, the liquid level rises again, engulfing the shell and leading to a surface crack. As the filling velocity is characterized by the damping oscillations, surface cracks will form at different heights. The results shed light on designing a suitable pressurizing speed for the low pressure casting process.

On the role of the frozen surface approximation in small wave-height perturbation theory for moving surfaces

NASA Astrophysics Data System (ADS)

Keiffer, Richard; Novarini, Jorge; Scharstein, Robert

2002-11-01

In the standard development of the small wave-height approximation (SWHA) perturbation theory for scattering from moving rough surfaces [e.g., E. Y. Harper and F. M. Labianca, J. Acoust. Soc. Am. 58, 349-364 (1975)] the necessity for any sort of frozen surface approximation is avoided by the replacement of the rough boundary by a flat (and static) boundary. In this paper, this seemingly fortuitous byproduct of the small wave-height approximation is examined and found to fail to fully agree with an analysis based on the kinematics of the problem. Specifically, the first-order correction term from standard perturbation approach predicts a scattered amplitude that depends on the source frequency, whereas the kinematics of the problem point to a scattered amplitude that depends on the scattered frequency. It is shown that a perturbation approach in which an explicit frozen surface approximation is made before the SWHA is invoked predicts (first-order) scattered amplitudes that are in agreement with the kinematic analysis. [Work supported by ONR/NRL (PE 61153N-32) and by grants of computer time DoD HPC Shared Resource Center at Stennis Space Center, MS.

Acoustics and hydrodynamics of a drop impact on a water surface

NASA Astrophysics Data System (ADS)

Chashechkin, Yu. D.; Prokhorov, V. E.

2017-01-01

Hydrodynamic and acoustic processes associated with a drop impact on a water surface were studied experimentally. Acoustic signals were detected underwater (with a hydrophone) and in air (with a microphone), the flow pattern was recorded with a high-speed camera, and the surface perturbation was monitored with a laser detector. The dimensionless parameters of flows (Reynolds, Froude, and Weber numbers) induced by the impact varied with fall height within the ranges of 5000 < Re < 20000, 20 < Fr < 350, and 70 < We < 1000. The sequence of acoustic signals incorporated an impact pulse at the moment of contact between a drop and the surface and a series of acoustic packets attributable to the resonance emission of gas cavities. The top of the impact pulse, which was detected clearly in the entire fall height range, had a complex structure with short high-frequency and longer low-frequency oscillations. The total number and the parameters of emitted acoustic packets depended to a considerable extent on the fall height. The cases of lacking, one-time, and repeated emission of packets were noted in a series of experiments performed at a constant fall height. The analysis of video data showed that the signal variability was induced by considerable differences in the scenarios of water entry of a drop, which assumed an ovoid shape at the end trajectory segment, in the mentioned experiments.

Sensitivity of turbine-height wind speeds to parameters in planetary boundary-layer and surface-layer schemes in the weather research and forecasting model

DOE PAGES

Yang, Ben; Qian, Yun; Berg, Larry K.; ...

2016-07-21

We evaluate the sensitivity of simulated turbine-height wind speeds to 26 parameters within the Mellor–Yamada–Nakanishi–Niino (MYNN) planetary boundary-layer scheme and MM5 surface-layer scheme of the Weather Research and Forecasting model over an area of complex terrain. An efficient sampling algorithm and generalized linear model are used to explore the multiple-dimensional parameter space and quantify the parametric sensitivity of simulated turbine-height wind speeds. The results indicate that most of the variability in the ensemble simulations is due to parameters related to the dissipation of turbulent kinetic energy (TKE), Prandtl number, turbulent length scales, surface roughness, and the von Kármán constant. Themore » parameter associated with the TKE dissipation rate is found to be most important, and a larger dissipation rate produces larger hub-height wind speeds. A larger Prandtl number results in smaller nighttime wind speeds. Increasing surface roughness reduces the frequencies of both extremely weak and strong airflows, implying a reduction in the variability of wind speed. All of the above parameters significantly affect the vertical profiles of wind speed and the magnitude of wind shear. Lastly, the relative contributions of individual parameters are found to be dependent on both the terrain slope and atmospheric stability.« less

Sensitivity of turbine-height wind speeds to parameters in planetary boundary-layer and surface-layer schemes in the weather research and forecasting model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Ben; Qian, Yun; Berg, Larry K.

We evaluate the sensitivity of simulated turbine-height wind speeds to 26 parameters within the Mellor–Yamada–Nakanishi–Niino (MYNN) planetary boundary-layer scheme and MM5 surface-layer scheme of the Weather Research and Forecasting model over an area of complex terrain. An efficient sampling algorithm and generalized linear model are used to explore the multiple-dimensional parameter space and quantify the parametric sensitivity of simulated turbine-height wind speeds. The results indicate that most of the variability in the ensemble simulations is due to parameters related to the dissipation of turbulent kinetic energy (TKE), Prandtl number, turbulent length scales, surface roughness, and the von Kármán constant. Themore » parameter associated with the TKE dissipation rate is found to be most important, and a larger dissipation rate produces larger hub-height wind speeds. A larger Prandtl number results in smaller nighttime wind speeds. Increasing surface roughness reduces the frequencies of both extremely weak and strong airflows, implying a reduction in the variability of wind speed. All of the above parameters significantly affect the vertical profiles of wind speed and the magnitude of wind shear. Lastly, the relative contributions of individual parameters are found to be dependent on both the terrain slope and atmospheric stability.« less

El Niño: The Weak, Getting Weaker

NASA Image and Video Library

2005-03-14

Recent sea-level height data from NASA U.S./France Jason altimetric satellite during a 10-day cycle ending February 22, 2005, show that the central equatorial Pacific continues to exhibit an area of higher-than-normal sea surface heights.

Semantic 3d City Model to Raster Generalisation for Water Run-Off Modelling

NASA Astrophysics Data System (ADS)

Verbree, E.; de Vries, M.; Gorte, B.; Oude Elberink, S.; Karimlou, G.

2013-09-01

Water run-off modelling applied within urban areas requires an appropriate detailed surface model represented by a raster height grid. Accurate simulations at this scale level have to take into account small but important water barriers and flow channels given by the large-scale map definitions of buildings, street infrastructure, and other terrain objects. Thus, these 3D features have to be rasterised such that each cell represents the height of the object class as good as possible given the cell size limitations. Small grid cells will result in realistic run-off modelling but with unacceptable computation times; larger grid cells with averaged height values will result in less realistic run-off modelling but fast computation times. This paper introduces a height grid generalisation approach in which the surface characteristics that most influence the water run-off flow are preserved. The first step is to create a detailed surface model (1:1.000), combining high-density laser data with a detailed topographic base map. The topographic map objects are triangulated to a set of TIN-objects by taking into account the semantics of the different map object classes. These TIN objects are then rasterised to two grids with a 0.5m cell-spacing: one grid for the object class labels and the other for the TIN-interpolated height values. The next step is to generalise both raster grids to a lower resolution using a procedure that considers the class label of each cell and that of its neighbours. The results of this approach are tested and validated by water run-off model runs for different cellspaced height grids at a pilot area in Amersfoort (the Netherlands). Two national datasets were used in this study: the large scale Topographic Base map (BGT, map scale 1:1.000), and the National height model of the Netherlands AHN2 (10 points per square meter on average). Comparison between the original AHN2 height grid and the semantically enriched and then generalised height grids shows that water barriers are better preserved with the new method. This research confirms the idea that topographical information, mainly the boundary locations and object classes, can enrich the height grid for this hydrological application.

Using Seasonal Forecasting Data for Vessel Routing

NASA Astrophysics Data System (ADS)

Bell, Ray; Kirtman, Ben

2017-04-01

We present an assessment of seasonal forecasting of surface wind speed, significant wave height and ocean surface current speed in the North Pacific for potential use of vessel routing from Singapore to San Diego. WaveWatchIII is forced with surface winds and ocean surface currents from the Community Climate System Model 4 (CCSM4) retrospective forecasts for the period of 1982-2015. Several lead time forecasts are used from zero months to six months resulting in 2,720 model years, ensuring the findings from this study are robust. July surface wind speed and significant wave height can be skillfully forecast with a one month lead time, with the western North Pacific being the most predictable region. Beyond May initial conditions (lead time of two months) the El Niño Southern Oscillation (ENSO) Spring predictability barrier limits skill of significant wave height but there is skill for surface wind speed with January initial conditions (lead time of six months). In a separate study of vessel routing between Norfolk, Virginia and Gibraltar we demonstrate the benefit of a multimodel approach using the North American Multimodel Ensemble (NMME). In collaboration with Charles River Analytics an all-encompassing forecast is presented by using machine learning on the various ensembles which can be using used for industry applications.

Thermocouple Boundary Layer Rake

NASA Technical Reports Server (NTRS)

Hwang, Danny P. (Inventor); Will, Herbert A. (Inventor); Fralick, Gustave C. (Inventor)

2002-01-01

Apparatus and method for providing a velocity flow profile near a reference surface. A measuring device utilizes a plurality of thermojunction pairs to provide the velocity flow profile in accordance with behavior of a gas relative to a constant thickness strut which stands vertically from the reference surface such that the span is normal to the surface, and the chord is parallel to the surface along the initial flow direction. Each thermojunction is carried on either side of a heater formed on a measuring surface in a constant thickness portion of a strut. Additionally, each thermojunction of a given pair is located at a predetermined height from the reference surface. Gas velocity data obtained from temperature differentials from one side of the heater to the other at each successive height is utilized to generate the velocity and turbulence level profiles.

Measuring orthometric water heights from lightweight Unmanned Aerial Vehicles (UAVs)

NASA Astrophysics Data System (ADS)

Bandini, Filippo; Olesen, Daniel; Jakobsen, Jakob; Reyna-Gutierrez, Jose Antonio; Bauer-Gottwein, Peter

2016-04-01

A better quantitative understanding of hydrologic processes requires better observations of hydrological variables, such as surface water area, water surface level, its slope and its temporal change. However, ground-based measurements of water heights are restricted to the in-situ measuring stations. Hence, the objective of remote sensing hydrology is to retrieve these hydraulic variables from spaceborne and airborne platforms. The forthcoming Surface Water and Ocean Topography (SWOT) satellite mission will be able to acquire water heights with an expected accuracy of 10 centimeters for rivers that are at least 100 m wide. Nevertheless, spaceborne missions will always face the limitations of: i) a low spatial resolution which makes it difficult to separate water from interfering surrounding areas and a tracking of the terrestrial water bodies not able to detect water heights in small rivers or lakes; ii) a limited temporal resolution which limits the ability to determine rapid temporal changes, especially during extremes. Unmanned Aerial Vehicles (UAVs) are one technology able to fill the gap between spaceborne and ground-based observations, ensuring 1) high spatial resolution; 2) tracking of the water bodies better than any satellite technology; 3) timing of the sampling which only depends on the operator 4) flexibility of the payload. Hence, this study focused on categorizing and testing sensors capable of measuring the range between the UAV and the water surface. The orthometric height of the water surface is then retrieved by subtracting the height above water measured by the sensors from the altitude above sea level retrieved by the onboard GPS. The following sensors were tested: a) a radar, b) a sonar c) a laser digital-camera based prototype developed at Technical University of Denmark. The tested sensors comply with the weight constraint of small UAVs (around 1.5 kg). The sensors were evaluated in terms of accuracy, maximum ranging distance and beam divergence. The sonar demonstrated a maximum ranging distance of 10 m, the laser prototype of 15 m, whilst the radar is potentially able to measure the range to water surface from a height up to 50 m. After numerous test flights above a lake with an approximately horizontal water surface, estimation of orthometric water height error, including overall accuracy of the system GPS-sensors, was possible. The RTK GPS system proved able to deliver a relative vertical accuracy better than 5-7 cm. The radar confirmed to have the best reliability with an accuracy which is generally few cm (0.7-1.3% of the ranging distance). Whereas the accuracy of the sonar and laser varies from few cm (0.7-1.6% of the ranging distance) to some tens of cm because sonar measurements are generally influenced by noise and turbulence generated by the propellers of the UAV and the laser prototype is affected by drone vibrations and water waviness. However, the laser prototype demonstrated the lowest beam divergence, which is required to measure unconventional remote sensing targets, such as sinkholes and Mexican cenotes, and to clearly distinguish between rivers and interfering surroundings, such as riparian vegetation.

Influence of ceramic surface texture on the wear of gold alloy and heat-pressed ceramics.

PubMed

Saiki, Osamu; Koizumi, Hiroyasu; Nogawa, Hiroshi; Hiraba, Haruto; Akazawa, Nobutaka; Matsumura, Hideo

2014-01-01

The purpose of this study was to evaluate the influence of ceramic surface texture on the wear of rounded rod specimens. Plate specimens were fabricated from zirconia (ZrO2), feldspathic porcelain, and lithium disilicate glass ceramics (LDG ceramics). Plate surfaces were either ground or polished. Rounded rod specimens with a 2.0-mm-diameter were fabricated from type 4 gold alloy and heat-pressed ceramics (HP ceramics). Wear testing was performed by means of a wear testing apparatus under 5,000 reciprocal strokes of the rod specimen with 5.9 N vertical loading. The results were statistically analyzed with a non-parametric procedure. The gold alloy showed the maximal height loss (90.0 µm) when the rod specimen was abraded with ground porcelain, whereas the HP ceramics exhibited maximal height loss (49.8 µm) when the rod specimen was abraded with ground zirconia. There was a strong correlation between height loss of the rod and surface roughness of the underlying plates, for both the gold alloy and HP ceramics.

Photoinitiator Nucleotide for Quantifying Nucleic Acid Hybridization

PubMed Central

Johnson, Leah M.; Hansen, Ryan R.; Urban, Milan; Kuchta, Robert D.; Bowman, Christopher N.

2010-01-01

This first report of a photoinitiator-nucleotide conjugate demonstrates a novel approach for sensitive, rapid and visual detection of DNA hybridization events. This approach holds potential for various DNA labeling schemes and for applications benefiting from selective DNA-based polymerization initiators. Here, we demonstrate covalent, enzymatic incorporation of an eosin-photoinitiator 2′-deoxyuridine-5′-triphosphate (EITC-dUTP) conjugate into surface-immobilized DNA hybrids. Subsequent radical chain photoinitiation from these sites using an acrylamide/bis-acrylamide formulation yields a dynamic detection range between 500pM and 50nM of DNA target. Increasing EITC-nucleotide surface densities leads to an increase in surface-based polymer film heights until achieving a film height plateau of 280nm ±20nm at 610 ±70 EITC-nucleotides/μm2. Film heights of 10–20 nm were obtained from eosin surface densities of approximately 20 EITC-nucleotides/μm2 while below the detection limit of ~10 EITC-nucleotides/μm2, no detectable films were formed. This unique threshold behavior is utilized for instrument-free, visual quantification of target DNA concentration ranges. PMID:20337438

Strategy of restraining ripple error on surface for optical fabrication.

PubMed

Wang, Tan; Cheng, Haobo; Feng, Yunpeng; Tam, Honyuen

2014-09-10

The influence from the ripple error to the high imaging quality is effectively reduced by restraining the ripple height. A method based on the process parameters and the surface error distribution is designed to suppress the ripple height in this paper. The generating mechanism of the ripple error is analyzed by polishing theory with uniform removal character. The relation between the processing parameters (removal functions, pitch of path, and dwell time) and the ripple error is discussed through simulations. With these, the strategy for diminishing the error is presented. A final process is designed and demonstrated on K9 work-pieces using the optimizing strategy with magnetorheological jet polishing. The form error on the surface is decreased from 0.216λ PV (λ=632.8  nm) and 0.039λ RMS to 0.03λ PV and 0.004λ RMS. And the ripple error is restrained well at the same time, because the ripple height is less than 6 nm on the final surface. Results indicate that these strategies are suitable for high-precision optical manufacturing.

Arc program documentation

NASA Technical Reports Server (NTRS)

Mcmillan, J. D.

1976-01-01

A description of the input and output files and the data control cards for the altimeter residual computation (ARC) computer program is given. The program acts as the final altimeter preprocessor before the data is reformatted for external users. It calculates all parameters necessary for the computation of the altimeter observation residuals and the sea surface height. Mathematical models used for calculating tropospheric refraction, geoid height, tide height, ephemeris, and orbit geometry are described.

Hurricane Directional Wave Spectrum Spatial Variation in the Open Ocean

NASA Technical Reports Server (NTRS)

Wright, C. W.; Walsh, E. J.; Vandemark, D.; Krabill, W. B.; Garcia, A. W.

1999-01-01

The sea surface directional wave spectrum was measured for the first time in all quadrants of a hurricane in open water using the NASA airborne scanning radar altimeter (SRA) carried aboard one of the NOAA WP-3D hurricane hunter aircraft at 1.5 km height. The SRA measures the energetic portion of the directional wave spectrum by generating a topographic map of the sea surface. At 8 Hz, the SRA sweeps a radar beam of 1 deg half-power width (two-way) across the aircraft ground track over a swath equal to 0. 8 of the aircraft height, simultaneously measuring the backscattered power at its 36 GHz (8.3 mm) operating frequency and the range to the sea surface at 64 positions. These slant ranges are multiplied by the cosine of the incidence angles to determine the vertical distances from the aircraft to the sea surface. Subtracting these distances from the aircraft height produces the sea surface elevation map. The sea surface topography is interpolated to a uniform grid, transformed by a two-dimensional FFT, and Doppler corrected. The data presented were acquired on 24 August 1998 when hurricane Bonnie was east of the Bahamas and moving slowly to the north. Wave heights up to 18 m were observed and the spatial variation of the wave field was dramatic. The dominant waves generally propagated at significant angles to the downwind direction and at times there were wave fields traveling at right angles to each other. The NOAA aircraft spent over five hours within 180 km of the hurricane Bonnie eye, and made five eye penetrations. A 2-minute animation of the directional wave spectrum spatial variation over this period will be shown.