Science.gov

Sample records for suspension array analysis

  1. Suspension array technology: new tools for gene and protein analysis.

    PubMed

    Nolan, J P; Mandy, F F

    2001-11-01

    Flow cytometry has long been a key tool in the analysis of lymphocytes and other cells, owing to its ability to make quantitative, homogeneous, multiparameter measurements of particles. New developments in illumination sources, digital signal processing and microsphere chemistry are driving the development of flow cytometry in new areas of biomedical research. In particular. the maturation of approaches to perform highly parallel analyses using suspension arrays of microspheres with different morphospectral features is making flow cytometry an important tool in protein and genetic analysis. In this paper, we review the development of suspension array technology (SAT), current applications in protein and genomic analysis, and the prospects for this platform in a variety of large scale screening applications. PMID:11838973

  2. Highly specific detection of thrombin using an aptamer-based suspension array and the interaction analysis via microscale thermophoresis.

    PubMed

    Liu, Yanan; Liu, Nan; Ma, Xinhua; Li, Xiaoli; Ma, Jia; Li, Ya; Zhou, Zhijiang; Gao, Zhixian

    2015-04-21

    A novel aptamer-based suspension array detection platform was designed for the sensitive, specific and rapid detection of human α-thrombin as a model. Thrombin was first recognized by a 29-mer biotinylated thrombin-binding aptamer (TBA) in solution. Then 15-mer TBA modified magnetic beads (MBs) captured the former TBA-thrombin to form an aptamer-thrombin-aptamer sandwich complex. The median fluorescence intensity obtained via suspension array technology was positively correlated with the thrombin concentration. The interactions between TBAs and thrombin were analyzed using microscale thermophoresis (MST). The dissociation constants could be respectively achieved to be 44.2 ± 1.36 nM (TBA1-thrombin) and 15.5 ± 0.637 nM (TBA2-thrombin), which demonstrated the high affinities of TBA-thrombin and greatly coincided with previous reports. Interaction conditions such as temperature, reaction time, and coupling protocol were optimized. The dynamic quantitative working range of the aptamer-based suspension array was 18.37-554.31 nM, and the coefficients of determination R(2) were greater than 0.9975. The lowest detection limit of thrombin was 5.4 nM. This method was highly specific for thrombin without being affected by other analogs and interfering proteins. The recoveries of thrombin spiked in diluted human serum were in the range 82.6-114.2%. This innovative aptamer-based suspension array detection platform not only exhibits good sensitivity based on MBs facilitating highly efficient separation and amplification, but also suggests high specificity by the selective aptamer binding, thereby suggesting the expansive application prospects in research and clinical fields.

  3. Multiplexed Microsphere Suspension Array-Based Immunoassays.

    PubMed

    Lin, Andrew; Salvador, Alexandra; Carter, J Mark

    2015-01-01

    ELISA is an extremely powerful tool to detect analytes because of its sensitivity, selectivity, reproducibility and ease of use. Here we describe sandwich immunoassays performed in suspension on spectrally unique microspheres developed by Luminex. Luminex assays offer the benefit of multiplex analysis of large numbers of analytes in a single reaction. Because the microspheres are spectrally unique, many microspheres, each attached to various antibodies, can be added to a single sample. Luminex instruments can distinguish each microsphere and detect the intensity of a reporter signal for each microsphere. Results are reported in Median Fluorescent Intensities for each analyte. Luminex assays can be used to detect up to 500 analytes in a high-throughput format. Luminex refers to this technology as xMAP(®). Here we describe a routine protocol for a Luminex immunoassay. Other Luminex assays would have to be optimized for specific conditions according to their use. PMID:26160569

  4. Suspension Array Analysis of 16S rRNA from Fe- and SO 2-4 Reducing Bacteria in Uranium Contaminated Sediments Undergoing Bioremediation

    SciTech Connect

    Chandler, Darrell P.; Jarrell, Ann E.; Roden , Eric R.; Golova, Julia; Chernov, Boris; Schipma, Matthew; Peacock, Aaron D.; Long, Philip E.

    2006-07-15

    A 16S rRNA-targeted tunable bead array 2 was developed and applied in a retrospective analysis of metal- and sulfate-reducing bacteria in contaminated subsurface 4 sediments undergoing in situ U(VI) bioremediation. Total RNA was extracted from subsurface sediments and interrogated directly, without employing a polymerase chain 6 reaction step. Bead array validation studies with total RNA derived from 26 isolates indicate that the behavior and response of the 16S rRNA-targeted oligonucleotide probes 8 could not be predicted based upon primary nucleic acid sequence. Likewise, signal intensity (absolute or normalized) could not be used to assess the relative abundance of 10 one organism (or rRNA) to another. Nevertheless, microbial community structure and dynamics through time and space and as measured by the rRNA-targeted bead array were 12 consistent with previous data acquired at the site, where indigenous sulfate and iron reducing bacteria and Desulfotomaculum near neighbors were the most responsive to a 14 change in injected acetate concentrations. Interpreting bead array data was best accomplished by analyzing the relative change in probe response over spatially and 16 temporally related samples, and by only considering the response of one probe to itself in relation to a background (reference) environmental sample. By limiting the data 18 interpretation in this manner and placing it within the context of supporting geochemical and microbiological analyses, we conclude that ecologically relevant and meaningful 20 information can be derived from direct microarray analysis of rRNA in uncharacterized environmental samples, even amidst current analytical uncertainty surrounding individual 22 probe behavior on tunable bead arrays.

  5. Simultaneous Detection of Fenitrothion and Chlorpyrifos-Methyl with a Photonic Suspension Array

    PubMed Central

    Wang, Xuan; Mu, Zhongde; Shangguan, Fengqi; Liu, Ran; Pu, Yuepu; Yin, Lihong

    2013-01-01

    A technique was developed for simultaneous detection of fenitrothion (FNT) and chlorpyrifos-methyl (CLT) using a photonic suspension array based on silica colloidal crystal beads (SCCBs). The SCCBs were encoded with the characteristic reflection peak originating from the stop-band of colloidal crystal. This approach avoids the bleaching, fading or potential interference seen when encoding by fluorescence. SCCBs with a nanopatterned surface had increased biomolecule binding capacity and improved stability. Under optimal conditions, the proposed suspension array allowed simultaneous detection of the selected pesticides in the ranges of 0.25 to 1024 ng/mL and 0.40 to 735.37 ng/mL, with the limits of detection (LODs) of 0.25 and 0.40 ng/mL, respectively. The suspension array was specific and had no significant cross-reactivity with other chemicals. The mean recoveries in tests in which samples were spiked with target standards were 82.35% to 109.90% with a standard deviation within 9.93% for CLT and 81.64% to 108.10% with a standard deviation within 8.82% for FNT. The proposed method shows a potentially powerful capability for fast quantitative analysis of pesticide residues. PMID:23805266

  6. Rapid and multiplex microRNA detection on graphically encoded silica suspension array.

    PubMed

    Jiang, Li; Shen, Ye; Zheng, Kexiao; Li, Jiong

    2014-11-15

    MicroRNA (miRNA), an 18-24-nucleotide noncoding RNA molecule, has become an ideal class of biomarker candidates for clinical diagnosis of cancers. By now, a number of detection methods for miRNAs have been developed on planar arrays and suspension arrays. In this work, we describe a hybridization-triggered fluorescence strategy for label-free and multiplex miRNA detection on graphically encoded silica suspension array. The total RNA is directly applied for analysis with an 8-mer Universal Tag which can be selectively captured by the capture probe via base-stacking effects. Benefiting from base-stacking effects, this novel method exhibits superb discrimination ability toward the 5' and 3' end single-nucleotide alteration. Mature miRNAs can be distinguished from their corresponding pre-miRNAs easily. Moreover, the estimated detection limit of 5 amol is comparable to some of the most sensitive methods. All these mentioned characteristics offer exciting possibilities for discovery and clinical applications.

  7. Using oligonucleotide suspension arrays for laboratory identification of bacteria responsible for bacteremia*

    PubMed Central

    Hou, Xiao-li; Jiang, Han-liang; Cao, Qing-yi; Zhao, Li-ying; Chang, Barbara J.; Chen, Zhi

    2008-01-01

    The aim of this study was to develop and validate an oligonucleotide suspension array for rapid identification of 15 bacterial species responsible for bacteremia, particularly prevalent in Chinese hospitals. The multiplexed array, based on the QIAGEN LiquiChip Workstation, included 15 oligonucleotide probes which were covalently bound to different bead sets. PCR amplicons of a variable region of the bacterial 23S rRNA genes were hybridized to the bead-bound probes. Thirty-eight strains belonging to 15 species were correctly identified on the basis of their corresponding species-specific hybridization profiles. The results show that the suspension array, in a single assay, can differentiate isolates over a wide range of strains and species, and suggest the potential utility of suspension array system to clinical laboratory diagnosis. PMID:18381803

  8. A decoupled control approach for magnetic suspension systems using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Groom, Nelson J.

    1993-01-01

    A decoupled control approach for a Large Gap Magnetic Suspension System (LGMSS) is presented. The control approach is developed for an LGMSS which provides five degree-of-freedom control of a cylindrical suspended element that contains a core composed of permanent magnet material. The suspended element is levitated above five electromagnets mounted in a planar array. Numerical results are obtained by using the parameters of the Large Angle Magnetic Suspension Test Fixture (LAMSTF) which is a small scale laboratory model LGMSS.

  9. Suspension, Race, and Disability: Analysis of Statewide Practices and Reporting

    ERIC Educational Resources Information Center

    Krezmien, Michael P.; Leone, Peter E.; Achilles, Georgianna M.

    2006-01-01

    This analysis of statewide suspension data from 1995 to 2003 in Maryland investigated disproportionate suspensions of minority students and students with disabilities. We found substantial increases in over-all rates of suspensions from 1995 to 2003, as well as disproportionate rates of suspensions for African American students, American Indian…

  10. Magnetic Suspension Array Technology: Controlled Synthesis and Screening in Microfluidic Networks.

    PubMed

    Lin, Gungun; Karnaushenko, Dmitriy D; Bermúdez, Gilbert Santiago Cañón; Schmidt, Oliver G; Makarov, Denys

    2016-09-01

    Information tagging and processing are vital in information-intensive applications, e.g., telecommunication and high-throughput drug screening. Magnetic suspension array technology may offer intrinsic advantages to screening applications by enabling high distinguishability, the ease of code generation, and the feasibility of fast code readout, though the practical applicability of magnetic suspension array technology remains hampered by the lack of quality administration of encoded microcarriers. Here, a logic-controlled microfluidic system enabling controlled synthesis of magnetic suspension arrays in multiphase flow networks is realized. The smart and compact system offers a practical solution for the quality administration and screening of encoded magnetic microcarriers and addresses the universal need of process control for synthesis in microfluidic networks, i.e., on-demand creation of droplet templates for high information capacity. The demonstration of magnetic suspension array technology enabled by magnetic in-flow cytometry opens the avenue toward point-of-care multiplexed bead-based assays, clinical diagnostics, and drug discovery. PMID:27426124

  11. DNA analysis of epithelial cell suspensions

    SciTech Connect

    Wilson, J.S.; Johnson, N.F.; Holland, L.M.

    1985-01-01

    Cell suspensions of skin were obtained by animals exposed by skin painting of several crude oils. DNA analysis of these cell suspensions labeled with mithramycin provide determination of percentages of cells in the G/sub 1/, S and G/sub 2/M phases of the cell cycle. Data acquired showed differences from control animals occurring as early as 7 days after treatment and persisting through 21 days afterwards. There was histological evidence of erythema and hyperplasia in shale oil-exposed skins. Flow cytometric analysis of DNA content in shale-oil-exposed skin cells showed an increased percentage of cycling cells plus evidence of aneuploidy. Similar data from simply abraded skin showed increased percentages of cycling cells, but no aneuploidy. The shale-oil-exposed group, when compared to a standard petroleum-exposed group, had significantly increased percentages of cycling cells. This early indication of differing response to different complex mixtures was also seen in long-term skin exposures to these compounds. Similar analytical techniques were applied to tracheal cell suspensions from ozone-exposed rats. 12 refs., 4 figs., 4 tabs. (DT)

  12. Bead-based suspension array for simultaneous differential detection of five major swine viruses.

    PubMed

    Chen, Ru; Yu, Xiao-Lu; Gao, Xiao-Bo; Xue, Cun-Yi; Song, Chang-Xu; Li, Yan; Cao, Yong-Chang

    2015-01-01

    A novel multiplex detection array based on Luminex xMAP technology was developed and validated for simultaneous detection of five major viruses causing swine reproductive diseases. By combining one-step asymmetric multiplex reverse transcription polymerase chain reaction (RT-PCR) with xMAP bead-based hybridization and flow cytometry analysis, the resulting multiplex assay was capable of detecting single and mixed infections of PRRSV, PCV-2, PRV, CSFV, and PPV in a single reaction. The assay accurately detected and differentiated 23 viral strains used in this study. The low detection limit was determined as 2.2-22 copies/μL (corresponding to 0.5-6.8 fg/μL DNA template) on plasmid constructs containing viral fragments. The intra-assay and inter-assay variances (CV%) were low that ranged from 2.5 to 5.4 % and 4.1 to 7.6 %, respectively. The assay was applied to test field samples and detected single and mixed viral infections. The detection rate was higher than that of uniplex conventional PCR and RT-PCR methods. The detection of PRRSV by the bead-based multiplex assay was comparable with a commercially available real time RT-PCR kit. The test procedure on purified DNA or RNA samples could be completed within 2 h. In conclusion, the bead-based suspension array presented here proved to be a high-throughput practical tool that provided highly specific and sensitive identification of single and multiple infections of five major viruses in pigs and boar semen. PMID:25557628

  13. A bead-based suspension array for the multiplexed detection of begomoviruses and their whitefly vectors.

    PubMed

    van Brunschot, S L; Bergervoet, J H W; Pagendam, D E; de Weerdt, M; Geering, A D W; Drenth, A; van der Vlugt, R A A

    2014-03-01

    Bead-based suspension array systems enable simultaneous fluorescence-based identification of multiple nucleic acid targets in a single reaction. This study describes the development of a novel approach to plant virus and vector diagnostics, a multiplexed 7-plex array that comprises a hierarchical set of assays for the simultaneous detection of begomoviruses and Bemisia tabaci, from both plant and whitefly samples. The multiplexed array incorporates genus, species and strain-specific assays, offering a unique approach for identifying both known and unknown viruses and B. tabaci species. When tested against a large panel of sequence-characterized begomovirus and whitefly samples, the array was shown to be 100% specific to the homologous target. Additionally, the multiplexed array was highly sensitive, efficiently and concurrently determining both virus and whitefly identity from single viruliferous whitefly samples. The detection limit for one assay within the multiplexed array that specifically detects Tomato yellow leaf curl virus-Israel (TYLCV-IL) was quantified as 200fg of TYLCV-IL DNA, directly equivalent to that of TYLCV-specific qPCR. Highly reproducible results were obtained over multiple tests. The flexible multiplexed array described in this study has great potential for use in plant quarantine, biosecurity and disease management programs worldwide. PMID:24388931

  14. Nanoelectrode array for electrochemical analysis

    DOEpatents

    Yelton, William G.; Siegal, Michael P.

    2009-12-01

    A nanoelectrode array comprises a plurality of nanoelectrodes wherein the geometric dimensions of the electrode controls the electrochemical response, and the current density is independent of time. By combining a massive array of nanoelectrodes in parallel, the current signal can be amplified while still retaining the beneficial geometric advantages of nanoelectrodes. Such nanoelectrode arrays can be used in a sensor system for rapid, non-contaminating field analysis. For example, an array of suitably functionalized nanoelectrodes can be incorporated into a small, integrated sensor system that can identify many species rapidly and simultaneously under field conditions in high-resistivity water, without the need for chemical addition to increase conductivity.

  15. Comparison of two suspension arrays for simultaneous detection of five biothreat bacterial in powder samples.

    PubMed

    Yang, Yu; Wang, Jing; Wen, Haiyan; Liu, Hengchuan

    2012-01-01

    We have developed novel Bio-Plex assays for simultaneous detection of Bacillus anthracis, Yersinia pestis, Brucella spp., Francisella tularensis, and Burkholderia pseudomallei. Universal primers were used to amplify highly conserved region located within the 16S rRNA amplicon, followed by hybridized to pathogen-specific probes for identification of these five organisms. The other assay is based on multiplex PCR to simultaneously amplify five species-specific pathogen identification-targeted regions unique to individual pathogen. Both of the two arrays are validated to be flexible and sensitive for simultaneous detection of bioterrorism bacteria. However, universal primer PCR-based array could not identify Bacillus anthracis, Yersinia pestis, and Brucella spp. at the species level because of the high conservation of 16S rDNA of the same genus. The two suspension arrays can be utilized to detect Bacillus anthracis sterne spore and Yersinia pestis EV76 from mimic "write powder" samples, they also proved that the suspension array system will be valuable tools for diagnosis of bacterial biothreat agents in environmental samples. PMID:22690123

  16. Comparison of Two Suspension Arrays for Simultaneous Detection of Five Biothreat Bacterial in Powder Samples

    PubMed Central

    Yang, Yu; Wang, Jing; Wen, Haiyan; Liu, Hengchuan

    2012-01-01

    We have developed novel Bio-Plex assays for simultaneous detection of Bacillus anthracis, Yersinia pestis, Brucella spp., Francisella tularensis, and Burkholderia pseudomallei. Universal primers were used to amplify highly conserved region located within the 16S rRNA amplicon, followed by hybridized to pathogen-specific probes for identification of these five organisms. The other assay is based on multiplex PCR to simultaneously amplify five species-specific pathogen identification-targeted regions unique to individual pathogen. Both of the two arrays are validated to be flexible and sensitive for simultaneous detection of bioterrorism bacteria. However, universal primer PCR-based array could not identify Bacillus anthracis, Yersinia pestis, and Brucella spp. at the species level because of the high conservation of 16S rDNA of the same genus. The two suspension arrays can be utilized to detect Bacillus anthracis sterne spore and Yersinia pestis EV76 from mimic “write powder” samples, they also proved that the suspension array system will be valuable tools for diagnosis of bacterial biothreat agents in environmental samples. PMID:22690123

  17. A photonic crystal hydrogel suspension array for the capture of blood cells from whole blood.

    PubMed

    Zhang, Bin; Cai, Yunlang; Shang, Luoran; Wang, Huan; Cheng, Yao; Rong, Fei; Gu, Zhongze; Zhao, Yuanjin

    2016-02-14

    Diagnosing hematological disorders based on the separation and detection of cells in the patient's blood is a significant challenge. We have developed a novel barcode particle-based suspension array that can simultaneously capture and detect multiple types of blood cells. The barcode particles are polyacrylamide (PAAm) hydrogel inverse opal microcarriers with characteristic reflection peak codes that remain stable during cell capture on their surfaces. The hydrophilic PAAm hydrogel scaffolds of the barcode particles can entrap various plasma proteins to capture different cells in the blood, with little damage to captured cells. PMID:26815946

  18. Open-loop characteristics of magnetic suspension systems using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Groom, Nelson J.; Britcher, Colin P.

    1992-01-01

    The open-loop characteristics of a Large-Gap Magnetic Suspension System (LGMSS) were studied and numerical results are presented. The LGMSS considered provides five-degree-of-freedom control. The suspended element is a cylinder that contains a core composed of permanent magnet material. The magnetic actuators are air core electromagnets mounted in a planar array. Configurations utilizing five, six, seven, and eight electromagnets were investigated and all configurations were found to be controllable from coil currents and observable from suspended element positions. Results indicate that increasing the number of coils has an insignificant effect on mode shapes and frequencies.

  19. Microsphere suspension array assays for detection and differentiation of Hendra and Nipah viruses.

    PubMed

    Foord, Adam J; White, John R; Colling, Axel; Heine, Hans G

    2013-01-01

    Microsphere suspension array systems enable the simultaneous fluorescent identification of multiple separate nucleotide targets in a single reaction. We have utilized commercially available oligo-tagged microspheres (Luminex MagPlex-TAG) to construct and evaluate multiplexed assays for the detection and differentiation of Hendra virus (HeV) and Nipah virus (NiV). Both these agents are bat-borne zoonotic paramyxoviruses of increasing concern for veterinary and human health. Assays were developed targeting multiple sites within the nucleoprotein (N) and phosphoprotein (P) encoding genes. The relative specificities and sensitivities of the assays were determined using reference isolates of each virus type, samples from experimentally infected horses, and archival veterinary diagnostic submissions. Results were assessed in direct comparison with an established qPCR. The microsphere array assays achieved unequivocal differentiation of HeV and NiV and the sensitivity of HeV detection was comparable to qPCR, indicating high analytical and diagnostic specificity and sensitivity.

  20. A photonic crystal hydrogel suspension array for the capture of blood cells from whole blood

    NASA Astrophysics Data System (ADS)

    Zhang, Bin; Cai, Yunlang; Shang, Luoran; Wang, Huan; Cheng, Yao; Rong, Fei; Gu, Zhongze; Zhao, Yuanjin

    2016-02-01

    Diagnosing hematological disorders based on the separation and detection of cells in the patient's blood is a significant challenge. We have developed a novel barcode particle-based suspension array that can simultaneously capture and detect multiple types of blood cells. The barcode particles are polyacrylamide (PAAm) hydrogel inverse opal microcarriers with characteristic reflection peak codes that remain stable during cell capture on their surfaces. The hydrophilic PAAm hydrogel scaffolds of the barcode particles can entrap various plasma proteins to capture different cells in the blood, with little damage to captured cells.Diagnosing hematological disorders based on the separation and detection of cells in the patient's blood is a significant challenge. We have developed a novel barcode particle-based suspension array that can simultaneously capture and detect multiple types of blood cells. The barcode particles are polyacrylamide (PAAm) hydrogel inverse opal microcarriers with characteristic reflection peak codes that remain stable during cell capture on their surfaces. The hydrophilic PAAm hydrogel scaffolds of the barcode particles can entrap various plasma proteins to capture different cells in the blood, with little damage to captured cells. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr06368j

  1. Species-specific identification of seven vegetable oils based on suspension bead array.

    PubMed

    Li, Yuanyuan; Wu, Yajun; Han, Jianxun; Wang, Bin; Ge, Yiqiang; Chen, Ying

    2012-03-01

    Species adulteration of vegetable oils has become a main form of adulteration in vegetable oils, severely violating consumer rights and causing disorder in the market. A reliable method of species authentication of vegetable oils is desirable. This paper reports a novel method for identification of seven species of vegetable oils based on suspension bead array. One pair of universal primers and seven species-specific probes were designed targeting rbcl gene of the chloroplast. Each probe was coupled to a unique color-coded microsphere. Biotinylated PCR amplicons of seven oils were hybridized to the complementary probes on microsphere sets. Bound amplicons were detected fluorometrically using a reporter dye, streptavidin-R-phycoeryt hrin (SA-PE). A sample could be analyzed less than 1 h after PCR amplification. With the exception of olive probe, all probes showed no cross-reactivity with other species. Absolute detection limit of the seven probes ranged from 0.01 ng/μL to 0.0001 ng/μL. Detection limit in DNA mixture was from 10% to 5%. Detection of vegetable oils validated the effectiveness of the method. The suspension bead array as a rapid, sensitive, and high-throughput technology has potential to identify more species of vegetable oils with increased species of probes.

  2. Towards a peptide-based suspension array for the detection of pestivirus antibodies in swine.

    PubMed

    van der Wal, Fimme J; Jelsma, Tinka; Fijten, Helmi; Achterberg, René P; Loeffen, Willie L A

    2016-09-01

    Classical swine fever (CSF) is a highly contagious and lethal disease in swine. Serological tests for the diagnosis of CSF need not only to detect antibodies against CSFV, but also need to differentiate these from antibodies against other pestiviruses. To investigate the possibilities of specific peptide-based serology, various synthetic peptides that represent a well-described linear epitope of the CSFV E2 protein (TAVSPTTLR) were used to test the viability of a peptide-based suspension array for the detection of antibodies against pestiviruses in swine. The results show that N-terminally biotinylated peptides can bind to avidin conjugated beads, and function in detection of the corresponding monoclonal antibody WH303. There are indications that the length of the spacer between epitope and biotin affect the efficiency of the peptide-antibody interaction. A protocol was established that enables probing for antibodies in porcine sera, where neutravidin-blocking of serum and the use of empty control beads for normalization was crucial. With a set of porcine sera with antibodies against various pestiviruses, the proof of concept of a peptide-based suspension array for specific detection of antibodies against pestiviruses in porcine sera was demonstrated. PMID:27166561

  3. Implementation of a decoupled controller for a magnetic suspension system using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Cox, D. E.; Groom, N. J.

    1994-01-01

    An implementation of a decoupled, single-input/single-output control approach for a large angle magnetic suspension test fixture is described. Numerical and experimental results are presented. The experimental system is a laboratory model large gap magnetic suspension system which provides five degree-of-freedom control of a cylindrical suspended element. The suspended element contains a core composed of permanent magnet material and is levitated above five electromagnets mounted in a planar array.

  4. Rapid, Multiplexed Characterization of Shiga Toxin-Producing Escherichia coli (STEC) Isolates Using Suspension Array Technology

    PubMed Central

    Carter, John M.; Lin, Andrew; Clotilde, Laurie; Lesho, Matthew

    2016-01-01

    Molecular methods have emerged as the most reliable techniques to detect and characterize pathogenic Escherichia coli. These molecular techniques include conventional single analyte and multiplex PCR, PCR followed by microarray detection, pulsed-field gel electrophoresis (PFGE), and whole genome sequencing. The choice of methods used depends upon the specific needs of the particular study. One versatile method involves detecting serogroup-specific markers by hybridization or binding to encoded microbeads in a suspension array. This molecular serotyping method has been developed and adopted for investigating E. coli outbreaks. The major advantages of this technique are the ability to simultaneously serotype E. coli and detect the presence of virulence and pathogenicity markers. Here, we describe the development of a family of multiplex molecular serotyping methods for Shiga toxin-producing E. coli, compare their performance to traditional serotyping methods, and discuss the cost-benefit balance of these methods in the context of various food safety objectives. PMID:27242670

  5. Rapid, Multiplexed Characterization of Shiga Toxin-Producing Escherichia coli (STEC) Isolates Using Suspension Array Technology.

    PubMed

    Carter, John M; Lin, Andrew; Clotilde, Laurie; Lesho, Matthew

    2016-01-01

    Molecular methods have emerged as the most reliable techniques to detect and characterize pathogenic Escherichia coli. These molecular techniques include conventional single analyte and multiplex PCR, PCR followed by microarray detection, pulsed-field gel electrophoresis (PFGE), and whole genome sequencing. The choice of methods used depends upon the specific needs of the particular study. One versatile method involves detecting serogroup-specific markers by hybridization or binding to encoded microbeads in a suspension array. This molecular serotyping method has been developed and adopted for investigating E. coli outbreaks. The major advantages of this technique are the ability to simultaneously serotype E. coli and detect the presence of virulence and pathogenicity markers. Here, we describe the development of a family of multiplex molecular serotyping methods for Shiga toxin-producing E. coli, compare their performance to traditional serotyping methods, and discuss the cost-benefit balance of these methods in the context of various food safety objectives. PMID:27242670

  6. Microsphere Suspension Array Assays for Detection and Differentiation of Hendra and Nipah Viruses

    PubMed Central

    Foord, Adam J.; White, John R.; Colling, Axel; Heine, Hans G.

    2013-01-01

    Microsphere suspension array systems enable the simultaneous fluorescent identification of multiple separate nucleotide targets in a single reaction. We have utilized commercially available oligo-tagged microspheres (Luminex MagPlex-TAG) to construct and evaluate multiplexed assays for the detection and differentiation of Hendra virus (HeV) and Nipah virus (NiV). Both these agents are bat-borne zoonotic paramyxoviruses of increasing concern for veterinary and human health. Assays were developed targeting multiple sites within the nucleoprotein (N) and phosphoprotein (P) encoding genes. The relative specificities and sensitivities of the assays were determined using reference isolates of each virus type, samples from experimentally infected horses, and archival veterinary diagnostic submissions. Results were assessed in direct comparison with an established qPCR. The microsphere array assays achieved unequivocal differentiation of HeV and NiV and the sensitivity of HeV detection was comparable to qPCR, indicating high analytical and diagnostic specificity and sensitivity. PMID:23509705

  7. Analysis of Train Suspension System Using MR dampers

    NASA Astrophysics Data System (ADS)

    RamaSastry, DVA; Ramana, K. V.; Mohan Rao, N.; Siva Kumar, SVR; Priyanka, T. G. L.

    2016-09-01

    This paper deals with introducing MR dampers to the Train Suspension System for improving the ride comfort of the passengers. This type of suspension system comes under Semi-active suspension system which utilizes the properties of MR fluid to damp the vibrations. In case of high speed trains, the coach body is subjected to vibrations due to vertical displacement, yaw and pitch movements. When the body receives these disturbances from the ground,the transmission of vibrations to the passenger increases which affect the ride comfort. In this work, the equations of motion of suspension system are developed for both conventional passive system and semi-active system and are modelled in Matlab/Simulink and analysis has been carried out. The passive suspension system analysis shows that it is taking more time to damp the vibrations and at the same time the transmissibility of vibrations is more.Introducing MR dampers,vertical and angular displacements of the body are computed and compared. The results show that the introduction of MR dampers into the train suspension system improves ride comfort.

  8. Analysis of phased-array diode lasers

    SciTech Connect

    Hardy, A.; Streifer, W.

    1985-07-01

    An improved, more accurate analysis of phased-array diode lasers is presented, which yields results that differ both qualitatively and quantitatively from those previously employed. A numerical example indicating decreased splitting in array mode gains is included.

  9. Collision rates for rare cell capture in periodic obstacle arrays strongly depend on density of cell suspension.

    PubMed

    Cimrák, I

    2016-11-01

    Recently, computational modelling has been successfully used for determination of collision rates for rare cell capture in periodic obstacle arrays. The models were based on particle advection simulations where the cells were advected according to velocity field computed from two dimensional Navier-Stokes equations. This approach may be used under the assumption of very dilute cell suspensions where no mutual cell collisions occur. We use the object-in-fluid framework to demonstrate that even with low cell-to-fluid ratio, the optimal geometry of the obstacle array significantly changes. We show computational simulations for ratios of 3.5, 6.9 and 10.4% determining the optimal geometry of the periodic obstacle arrays. It was already previously demonstrated that cells in periodic obstacle arrays follow trajectories in two modes: the colliding mode and the zig-zag mode. The colliding mode maximizes the cell-obstacle collision frequency. Our simulations reveal that for dilute suspensions and for suspensions with cell-to-fluid ratio 3.5%, there is a range of column shifts for which the cells follow colliding trajectories. However we showed, that for 6.9 and 10.4%, the cells never follow colliding trajectories. PMID:27023645

  10. Site Specific Analysis of Recent CSMIP Downhole Array Data

    NASA Astrophysics Data System (ADS)

    Haddadi, H.; Graizer, V.; Shakal, A.

    2003-12-01

    California Strong Motion Instrumentation Program (CSMIP) started operating downhole arrays in 1989 to provide essential data for studying the effects of local soil conditions. As of September 2003, 19 downhole arrays were instrumented, 13 of those with cooperation of California Department of Transportation (Caltrans). More than 90 low amplitude recordings from earthquakes with 2.0arrays. The strongest acceleration of 0.5g was recorded at the La Cienega array in Los Angeles area during the M4.2 earthquake of September 9, 2001. This is a relatively small event with the epicentral distance of about 3 km and depth of 8 km (almost vertical wave incidence). A new downhole array was instrumented in May 2003 at Rohnert Park in Sonoma. The accelerometers are installed at the surface, depth of 11 m, and 47 m. The M4.3 Santa Rosa earthquake of May 25, 2003 is recorded at the array with the maximum acceleration of 0.9%g. The low amplitude recordings are used to evaluate P- and S- wave velocities at the site. The velocities obtained by correlation analysis agree with those of suspension logging. The M4.8 earthquake of September 3, 2002 is recorded at Los Angeles Obregon Park downhole array. The array was installed in 2000 and its local site geology consists of deep alluvium over sandstone. The accelerometers are installed at the surface and depth of 69 m. The recordings of the earthquake are used to correlate seismic wave motion at the surface and depth in horizontal and vertical directions. The S- and P- wave velocities obtained by correlation analysis are compared with those of suspension logging method. The new geotechnical array at Aptos in Santa Cruz is designed to study the effects of the cliff on seismic ground motion. The accelerometers are located at the surface and planned to install at depth of 30 m. Also, a three components accelerometer recorder is installed about 15 m south of the borehole toward the seacliff near bluff. The low

  11. PEGylation of microbead surfaces reduces unspecific antibody binding in glycan-based suspension array.

    PubMed

    Pochechueva, Tatiana; Chinarev, Alexander; Bovin, Nicolai; Fedier, André; Jacob, Francis; Heinzelmann-Schwarz, Viola

    2014-10-01

    Glycan-based suspension array (SGA) is an "in-house" developed multi-target immunoassay, employing commercially available fluorescent microbeads as a solid support for unique chemically synthesized glycopolymers which capture naturally occurring human anti-glycan antibodies. SGA is a sensitive and reliable tool for the high-throughput screening of anti-glycan antibody alterations characteristic for a vast number of human diseases including cancer. However, unspecific background binding, for instance binding of non-target antibodies, is a common obstacle in such immunoassays. In an attempt to reduce unspecific background binding of serum (or plasma) antibodies, we prepared glycosylated microbeads modified with linear poly(ethylene glycols) (PEGs) of different lengths. We compared several kinds of PEG modifications: (a) partial side-chain substitution of glycopolymers by PEGs of different lengths, (b) end-point addition of biotin-linked PEGs to glycopolymer-coupled beads, and (c) linking of heterobifunctional PEGs to the bead surface prior to glycopolymer immobilization. Among the various modifications investigated, the direct modification of the bead surface with linear heterobifunctional PEGs, consisting of 23- and 60PEG-units significantly reduced the background binding. The end-point addition of biotin-linked PEGs, especially in the case of PEG consisting from 50PEG-units, helped to repel non-target binding caused by endogenous biotin. We observed unspecific binding predominantly for antibodies of IgG but of IgM class. The novel design of fluorescent microbeads allows the detection of human anti-glycan antibodies with increased specificity and opens new horizons for practical application of SGA as a diagnostic tool.

  12. Suspension Array for Multiplex Detection of Eight Fungicide-Resistance Related Alleles in Botrytis cinerea

    PubMed Central

    Zhang, Xin; Xie, Fei; Lv, Baobei; Zhao, Pengxiang; Ma, Xuemei

    2016-01-01

    A simple and high-throughput assay to detect fungicide resistance is required for large-scale monitoring of the emergence of resistant strains of Botrytis cinerea. Using suspension array technology performed on a Bio-Plex 200 System, we developed a single-tube allele-specific primer extension assay that can simultaneously detect eight alleles in one reaction. These eight alleles include E198 and 198A of the β-Tubulin gene (BenA), H272 and 272Y of the Succinate dehydrogenase iron–sulfur subunit gene (SdhB), I365 and 365S of the putative osmosensor histidine kinase gene (BcOS1), and F412 and 412S of the 3-ketoreductase gene (erg27). This assay was first established and optimized with eight plasmid templates containing the DNA sequence variants BenA-E198, BenA-198A, SdhB-H272, SdhB-272Y, BcOS1-I365, BcOS1-365S, erg27-F412, and erg27-412S. Results indicated that none of the probes showed cross-reactivity with one another. The minimum limit of detection for these genotypes was one copy per test. Four mutant plasmids were mixed with 10 ng/μL wild-type genomic DNA in different ratios. Detection sensitivity of mutant loci was 0.45% for BenA-E198A, BcOS1-I365S, and erg27-F412S, and was 4.5% for SdhB-H272Y. A minimum quantity of 0.1 ng of genomic DNA was necessary to obtain reliable results. This is the first reported assay that can simultaneously detect mutations in BenA, SdhB, BcOS1, and erg27. PMID:27708631

  13. Development of a Multiplexed Bead-Based Suspension Array for the Detection and Discrimination of Pospiviroid Plant Pathogens

    PubMed Central

    van Brunschot, Sharon L.; Bergervoet, Jan H. W.; Pagendam, Daniel E.; de Weerdt, Marjanne; Geering, Andrew D. W.; Drenth, André; van der Vlugt, René A. A.

    2014-01-01

    Efficient and reliable diagnostic tools for the routine indexing and certification of clean propagating material are essential for the management of pospiviroid diseases in horticultural crops. This study describes the development of a true multiplexed diagnostic method for the detection and identification of all nine currently recognized pospiviroid species in one assay using Luminex bead-based suspension array technology. In addition, a new data-driven, statistical method is presented for establishing thresholds for positivity for individual assays within multiplexed arrays. When applied to the multiplexed array data generated in this study, the new method was shown to have better control of false positives and false negative results than two other commonly used approaches for setting thresholds. The 11-plex Luminex MagPlex-TAG pospiviroid array described here has a unique hierarchical assay design, incorporating a near-universal assay in addition to nine species-specific assays, and a co-amplified plant internal control assay for quality assurance purposes. All assays of the multiplexed array were shown to be 100% specific, sensitive and reproducible. The multiplexed array described herein is robust, easy to use, displays unambiguous results and has strong potential for use in routine pospiviroid indexing to improve disease management strategies. PMID:24404188

  14. CST Suspension Analysis for Slurry Pumps of Tank 40

    SciTech Connect

    LEE, SIY.

    2004-04-01

    Tank 40 simulation models with four submersible slurry pumps available for the CST suspension operations have been developed to provide operational guidance of slurry pumps for an efficient sludge removal. A series of the modeling calculations have been performed for key operational parameters such as pump operation mode, number of operating pumps, and to provide a recommendation for CST suspension and mixing operations in Tank 40. Reference design and operating conditions shown in Table 1 were used to perform the modeling analysis of the tank CST mixing. In the analysis, the pump was assumed to be stationary or rotating. Solid obstructions including the pump housing, the 14 inches riser, and 6.75-ft tank support column were included in the simulation models. Free surface motion of the tank liquid was neglected for high tank liquid level using the literature information. Steady-state and transient analyses with a two-equation turbulence model were performed with FLUENTTM. All analyses we re based on three-dimensional results. A suspension capability was evaluated assuming that local fluid velocity can be used as a measure of CST suspension and mixing. For a minimum suspension velocity of 1.1 ft/sec for the largest CST size of 700 microns, the results indicated that at least two existing slurry mixers running at 3800 gpm flowrate per nozzle could keep CST solids suspended from the tank with a 200 in liquid level. In this case, the exception is for the fluid region with less than 20 wt contents of CST material. This is based on the conservative assumption that the largest CST size of 700 micron diameter remains unchanged neglecting a friable effect during the entire period of pump operations. The length of time that the CST material is exposed to the liquid stream lower than minimum suspension velocity is also important in affecting the ability of the liquid stream to suspend CST particle, and this effect is quantified in the present analysis by using the literature

  15. Extraction and Analysis of C60, C70 and PCBM in Aqueous Suspensions

    EPA Science Inventory

    The goal of this work is to develop sampling and analytical methodologies for extracting and quantifying fullerenes in aqueous colloidal suspensions. Sampling and analysis of colloidal suspensions pose some unique challenges not encountered when working with true solutions. For...

  16. F-Canyon Suspension and Deactivation Safety Analysis Reports

    SciTech Connect

    LOW, JM

    2004-04-30

    This paper describes Savannah River Site's compliance with the Department of Energy (DOE) direction to suspend current operations, transition to accommodate revised facility missions, and initiate operations to deactivate F-Canyon using a suspension and deactivation safety basis. This paper integrates multiple Workshop theme topics - Lessons Learned from the Safety Analysis Process, Improvements in Documenting Hazard and Accident Analysis, and Closure Issues - Decontamination and Decommissioning. The paper describes the process used to develop safety documentation to support suspension and deactivation activities for F-Canyon. Embodied are descriptive efforts that include development of intermediate and final ''end states'' (e.g., transitional operations), preparation of safety bases documents to support transition, performance of suspension and deactivation activities (e.g. solvent washing, tank/sump flushing, and laboratory waste processing), and downgrade of Safety Class and Safety Significant equipment. The reduction and/or removal of hazards in the facility result in significant risk (frequency times consequence) reduction to the public, site workers, and the environment. Risk reduction then allows the downgrade of safety class and safety significant systems (e.g., ventilation system) and elimination of associated surveillances. The downgrade of safety systems results in significant cost savings.

  17. Circulating cytokines, chemokines and adhesion molecules in normal pregnancy and preeclampsia determined by multiplex suspension array

    PubMed Central

    2010-01-01

    Background Preeclampsia is a severe complication of pregnancy characterized by an excessive maternal systemic inflammatory response with activation of both the innate and adaptive arms of the immune system. Cytokines, chemokines and adhesion molecules are central to innate and adaptive immune processes. The purpose of this study was to determine circulating levels of cytokines, chemokines and adhesion molecules in normal pregnancy and preeclampsia in a comprehensive manner, and to investigate their relationship to the clinical features and laboratory parameters of the study participants, including markers of overall inflammation (C-reactive protein), endothelial activation (von Willebrand factor antigen) and endothelial injury (fibronectin), oxidative stress (malondialdehyde) and trophoblast debris (cell-free fetal DNA). Results Serum levels of interleukin (IL)-1beta, IL-1 receptor antagonist (IL-1ra), IL-2, IL-4, IL-6, IL-8, IL-10, IL-12p40, IL-12p70, IL-18, interferon (IFN)-gamma, tumor necrosis factor (TNF)-alpha, transforming growth factor (TGF)-beta1, interferon-gamma-inducible protein (IP)-10, monocyte chemotactic protein (MCP)-1, intercellular adhesion molecule (ICAM)-1 and vascular cell adhesion molecule (VCAM)-1 were measured in 60 preeclamptic patients, 60 healthy pregnant women and 59 healthy non-pregnant women by multiplex suspension array and ELISA. In normal pregnancy, the relative abundance of circulating IL-18 over IL-12p70 and the relative deficiency of the bioactive IL-12p70 in relation to IL-12p40 might favour Th2-type immunity. Although decreased IL-1ra, TNF-alpha and MCP-1 concentrations of healthy pregnant relative to non-pregnant women reflect anti-inflammatory changes in circulating cytokine profile, their decreased serum IL-10 and increased IP-10 levels might drive pro-inflammatory responses. In addition to a shift towards Th1-type immunity (expressed by the increased IL-2/IL-4 and IFN-gamma/IL-4 ratios), circulating levels of the pro

  18. Stability considerations for magnetic suspension systems using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Groom, Nelson J.; Britcher, Colin P.

    1991-01-01

    Mathematical models of a 5, 6, 7, and 8 coil large gap magnetic suspension system (MSDS) are presented. Some of the topics covered include: force and torque equations, reduction of state-space form, natural modes, origins of modes, effect of rotation in azimuth (yaw), future work, and n-coil ring conclusions.

  19. Design and analysis of an intelligent controller for active geometry suspension systems

    NASA Astrophysics Data System (ADS)

    Goodarzi, Avesta; Oloomi, Ehsan; Esmailzadeh, Ebrahim

    2011-02-01

    An active geometry suspension (AGS) system is a device to optimise suspension-related factors such as toe angle and roll centre height by controlling vehicle's suspension geometry. The suspension geometry could be changed through control of suspension mounting point's position. In this paper, analysis and control of an AGS system is addressed. First, the effects of suspension geometry change on roll centre height and toe angle are studied. Then, based on an analytical approach, the improvement of the vehicle's stability and handling due to the control of suspension geometry is investigated. In the next section, an eight-degree-of-freedom handling model of a sport utility vehicle equipped with an AGS system is introduced. Finally, a self-tuning proportional-integral controller has been designed, using the fuzzy control theory, to control the actuator that changes the geometry of the suspension system. The simulation results show that an AGS system can improve the handling and stability of the vehicle.

  20. Hydraulically interconnected vehicle suspension: theoretical and experimental ride analysis

    NASA Astrophysics Data System (ADS)

    Smith, Wade A.; Zhang, Nong; Jeyakumaran, Jeku

    2010-01-01

    In this paper, a previously derived model for the frequency-domain analysis of vehicles with hydraulically interconnected suspension (HIS) systems is applied to the ride analysis of a four-degrees of freedom roll-plane, half-car under a rough road input. The entire road surface is assumed to be a realisation of a two-dimensional Gaussian homogenous and isotropic random process. The frequency responses of the half-car, in terms of bounce and roll acceleration, suspension deflection and dynamic tyre forces, are obtained under the road input of a single profile represented by its power spectral density function. Simulation results obtained for the roll-plane half-car fitted with an HIS and those with conventional suspensions are compared in detail. In addition, sensitivity analysis of key parameters of the HIS to the ride performance is carried out through simulations. The paper also presents the experimental validation of the analytical results of the free and forced vibrations of the roll-plane half-car. The hydraulic and mechanical system layouts, data acquisition system and the external force actuation mechanism of the test set-up are described in detail. The methodology for free and forced vibration tests and the application of mathematical models to account for the effective damper valve pressure loss are explained. Results are provided for the free and forced vibration testing of the half-car with different mean operating pressures. Comparisons are also given between the test results and those obtained from the system model with estimated damper valve loss coefficients. Furthermore, discussions on the deficiencies and practical implications of the proposed model and suggestions for future investigation are provided. Finally, the key findings of the investigation on the ride performance of the roll-plane half-car are summarised.

  1. Viscosity of dilute suspensions of rigid bead arrays at low shear: accounting for the variation in hydrodynamic stress over the bead surfaces.

    PubMed

    Allison, Stuart A; Pei, Hongxia

    2009-06-11

    In this work, we examine the viscosity of a dilute suspension of irregularly shaped particles at low shear. A particle is modeled as a rigid array of nonoverlapping beads of variable size and geometry. Starting from a boundary element formalism, approximate account is taken of the variation in hydrodynamic stress over the surface of the individual beads. For a touching dimer of two identical beads, the predicted viscosity is lower than the exact value by 5.2%. The methodology is then applied to several other model systems including tetramers of variable conformation and linear strings of touching beads. An analysis is also carried out of the viscosity and translational diffusion of several dilute amino acids and diglycine in water. It is concluded that continuum hydrodynamic modeling with stick boundary conditions is unable to account for the experimental viscosity and diffusion data simultaneously. A model intermediate between "stick" and "slip" could possibly reconcile theory and experiment. PMID:19453112

  2. Viscosity of dilute suspensions of rigid bead arrays at low shear: accounting for the variation in hydrodynamic stress over the bead surfaces.

    PubMed

    Allison, Stuart A; Pei, Hongxia

    2009-06-11

    In this work, we examine the viscosity of a dilute suspension of irregularly shaped particles at low shear. A particle is modeled as a rigid array of nonoverlapping beads of variable size and geometry. Starting from a boundary element formalism, approximate account is taken of the variation in hydrodynamic stress over the surface of the individual beads. For a touching dimer of two identical beads, the predicted viscosity is lower than the exact value by 5.2%. The methodology is then applied to several other model systems including tetramers of variable conformation and linear strings of touching beads. An analysis is also carried out of the viscosity and translational diffusion of several dilute amino acids and diglycine in water. It is concluded that continuum hydrodynamic modeling with stick boundary conditions is unable to account for the experimental viscosity and diffusion data simultaneously. A model intermediate between "stick" and "slip" could possibly reconcile theory and experiment.

  3. Modeling and analysis of electrorheological suspensions in shear flow.

    PubMed

    Seo, Youngwook P; Seo, Yongsok

    2012-02-14

    A model capable of describing the flow behavior of electrorheological (ER) suspensions under different electric field strengths and over the full range of shear rates is proposed. Structural reformation in the low shear rate region is investigated where parts of a material are in an undeformed state, while aligned structures reform under the shear force. The model's predictions were compared with the experimental data of some ER fluids as well as the CCJ (Cho-Choi-Jhon) model. This simple model's predictions of suspension flow behavior with subsequent aligned structure reformation agreed well with the experimental data, both quantitatively and qualitatively. The proposed model plausibly predicted the static yield stress, whereas the CCJ model and the Bingham model predicted only the dynamic yield stress. The master curve describing the apparent viscosity was obtained by appropriate scaling both axes, which showed that a combination of dimensional analysis and flow curve analysis using the proposed model yielded a quantitatively and qualitatively precise description of ER fluid rheological behavior based on relatively few experimental measurements.

  4. Fault Analysis in Solar Photovoltaic Arrays

    NASA Astrophysics Data System (ADS)

    Zhao, Ye

    Fault analysis in solar photovoltaic (PV) arrays is a fundamental task to increase reliability, efficiency and safety in PV systems. Conventional fault protection methods usually add fuses or circuit breakers in series with PV components. But these protection devices are only able to clear faults and isolate faulty circuits if they carry a large fault current. However, this research shows that faults in PV arrays may not be cleared by fuses under some fault scenarios, due to the current-limiting nature and non-linear output characteristics of PV arrays. First, this thesis introduces new simulation and analytic models that are suitable for fault analysis in PV arrays. Based on the simulation environment, this thesis studies a variety of typical faults in PV arrays, such as ground faults, line-line faults, and mismatch faults. The effect of a maximum power point tracker on fault current is discussed and shown to, at times, prevent the fault current protection devices to trip. A small-scale experimental PV benchmark system has been developed in Northeastern University to further validate the simulation conclusions. Additionally, this thesis examines two types of unique faults found in a PV array that have not been studied in the literature. One is a fault that occurs under low irradiance condition. The other is a fault evolution in a PV array during night-to-day transition. Our simulation and experimental results show that overcurrent protection devices are unable to clear the fault under "low irradiance" and "night-to-day transition". However, the overcurrent protection devices may work properly when the same PV fault occurs in daylight. As a result, a fault under "low irradiance" and "night-to-day transition" might be hidden in the PV array and become a potential hazard for system efficiency and reliability.

  5. Electrochemical analysis in a liposome suspension using lapachol as a hydrophobic electro active species.

    PubMed

    Okumura, Noriko; Wakamatsu, Shiori; Uno, Bunji

    2014-01-01

    This study demonstrated that the electro-chemical analysis of hydrophobic quinones can be performed in liposome suspension systems. We prepared and analyzed liposome suspensions containing lapachol, which is a quinone-based anti-tumor activity compound. In this suspension system, a simple one redox couple of lapachol is observed. These results are quite different from those obtained in organic solvents. In addition, the pH dependence of redox behaviors of lapachol could be observed in multilamellar vesicle (MLV) suspension system. This MLV suspension system method may approximate the electrochemical behavior of hydrophobic compounds in aqueous conditions. A benefit of this liposome suspension system for electrochemical analysis is that it enables to observe water-insoluble compounds without using organic solvents.

  6. Application of time-frequency analysis to the evaluation of the condition of car suspension

    NASA Astrophysics Data System (ADS)

    Szymański, G. M.; Josko, M.; Tomaszewski, F.; Filipiak, R.

    2015-06-01

    The article presents possibilities of use of vibration signal parameters for the evaluation of elements' clearance in the car suspension system. The time-spectrum analysis has been proposed to determine the frequency band connected with car body free vibration generated by impacts of suspension elements in case of clearance in suspension elements fixing to the car body. Diagnostic models allowing evaluation of shock absorber fastening to the car body are described in this work.

  7. An Analysis of the Mt. Meron Seismic Array

    SciTech Connect

    Pasyanos, M E; Ryall, F

    2008-01-10

    We have performed a quick analysis of the Mt. Meron seismic array to monitor regional seismic events in the Middle East. The Meron array is the only current array in the Levant and Arabian Peninsula and, as such, might be useful in contributing to event location, identification, and other analysis. Here, we provide a brief description of the array and a review of the travel time and array analysis done to assess its performance.

  8. Performance Analysis of ICA in Sensor Array.

    PubMed

    Cai, Xin; Wang, Xiang; Huang, Zhitao; Wang, Fenghua

    2016-01-01

    As the best-known scheme in the field of Blind Source Separation (BSS), Independent Component Analysis (ICA) has been intensively used in various domains, including biomedical and acoustics applications, cooperative or non-cooperative communication, etc. While sensor arrays are involved in most of the applications, the influence on the performance of ICA of practical factors therein has not been sufficiently investigated yet. In this manuscript, the issue is researched by taking the typical antenna array as an illustrative example. Factors taken into consideration include the environment noise level, the properties of the array and that of the radiators. We analyze the analytic relationship between the noise variance, the source variance, the condition number of the mixing matrix and the optimal signal to interference-plus-noise ratio, as well as the relationship between the singularity of the mixing matrix and practical factors concerned. The situations where the mixing process turns (nearly) singular have been paid special attention to, since such circumstances are critical in applications. Results and conclusions obtained should be instructive when applying ICA algorithms on mixtures from sensor arrays. Moreover, an effective countermeasure against the cases of singular mixtures has been proposed, on the basis of previous analysis. Experiments validating the theoretical conclusions as well as the effectiveness of the proposed scheme have been included. PMID:27164100

  9. Performance Analysis of ICA in Sensor Array

    PubMed Central

    Cai, Xin; Wang, Xiang; Huang, Zhitao; Wang, Fenghua

    2016-01-01

    As the best-known scheme in the field of Blind Source Separation (BSS), Independent Component Analysis (ICA) has been intensively used in various domains, including biomedical and acoustics applications, cooperative or non-cooperative communication, etc. While sensor arrays are involved in most of the applications, the influence on the performance of ICA of practical factors therein has not been sufficiently investigated yet. In this manuscript, the issue is researched by taking the typical antenna array as an illustrative example. Factors taken into consideration include the environment noise level, the properties of the array and that of the radiators. We analyze the analytic relationship between the noise variance, the source variance, the condition number of the mixing matrix and the optimal signal to interference-plus-noise ratio, as well as the relationship between the singularity of the mixing matrix and practical factors concerned. The situations where the mixing process turns (nearly) singular have been paid special attention to, since such circumstances are critical in applications. Results and conclusions obtained should be instructive when applying ICA algorithms on mixtures from sensor arrays. Moreover, an effective countermeasure against the cases of singular mixtures has been proposed, on the basis of previous analysis. Experiments validating the theoretical conclusions as well as the effectiveness of the proposed scheme have been included. PMID:27164100

  10. Parametric analysis of ATM solar array.

    NASA Technical Reports Server (NTRS)

    Singh, B. K.; Adkisson, W. B.

    1973-01-01

    The paper discusses the methods used for the calculation of ATM solar array performance characteristics and provides the parametric analysis of solar panels used in SKYLAB. To predict the solar array performance under conditions other than test conditions, a mathematical model has been developed. Four computer programs have been used to convert the solar simulator test data to the parametric curves. The first performs module summations, the second determines average solar cell characteristics which will cause a mathematical model to generate a curve matching the test data, the third is a polynomial fit program which determines the polynomial equations for the solar cell characteristics versus temperature, and the fourth program uses the polynomial coefficients generated by the polynomial curve fit program to generate the parametric data.

  11. Luminex(®) multiplex bead suspension arrays for the detection and serotyping of Salmonella spp.

    PubMed

    Dunbar, Sherry A; Ritchie, Vivette Brown; Hoffmeyer, Michaela R; Rana, Gunjot S; Zhang, Hongwei

    2015-01-01

    In this chapter we describe two commercially available bead-based molecular assays for detection, identification and serotyping of Salmonella. The xTAG(®) Gastrointestinal Pathogen Panel (GPP) is a qualitative multiplex test for the simultaneous detection of nucleic acids from Salmonella plus 14 other gastroenteritis-causing bacteria, viruses, and parasites from stool specimens. xTAG GPP uses the Luminex(®) xTAG universal array technology for the identification of specific target sequences combined with the xMAP(®) bead multiplexing platform for detection of the targets that were present in the starting sample. The xMAP Salmonella Serotyping Assay (SSA) is a multiplex nucleic acid-based direct hybridization assay for molecular identification of the serotype of Salmonella isolates. In xMAP SSA, target sequences amplified from cultured Salmonella isolates are captured by hybridization to sequence-specific capture probes which have been coupled to the multiplexed bead sets. Herein we provide detailed protocols for each of these assays and present data which describe their performance characteristics for detection and serotyping Salmonella.

  12. Rethinking Suspensions

    ERIC Educational Resources Information Center

    Stetson, Frank H.; Collins, Betty J.

    2010-01-01

    The overrepresentation of the Black and Hispanic subgroups in suspension data is a national problem and a troubling issue for schools and school systems across the United States. In Maryland, an analysis of student suspensions by school districts for the 2006-2007 school year revealed disproportionality issues. In 23 of the 24 jurisdictions,…

  13. Computational Methods for the Analysis of Array Comparative Genomic Hybridization

    PubMed Central

    Chari, Raj; Lockwood, William W.; Lam, Wan L.

    2006-01-01

    Array comparative genomic hybridization (array CGH) is a technique for assaying the copy number status of cancer genomes. The widespread use of this technology has lead to a rapid accumulation of high throughput data, which in turn has prompted the development of computational strategies for the analysis of array CGH data. Here we explain the principles behind array image processing, data visualization and genomic profile analysis, review currently available software packages, and raise considerations for future software development. PMID:17992253

  14. Optical position measurement for a large gap magnetic suspension system: Design and performance analysis

    NASA Technical Reports Server (NTRS)

    Welch, Sharon S.; Clemmons, James I., Jr.; Shelton, Kevin J.; Duncan, Walter C.

    1994-01-01

    An optical measurement system (OMS) has been designed and tested for a large gap magnetic suspension system (LGMSS). The LGMSS will be used to study control laws for magnetic suspension systems for vibration isolation and pointing applications. The LGMSS features six degrees of freedom and consists of a planar array of electromagnets that levitate and position a cylindrical element containing a permanent magnet core. The OMS provides information on the location and orientation of the element to the LGMSS control system to stabilize suspension. The hardware design of this optical sensing system and the tracking algorithms are presented. The results of analyses and experiments are presented that define the accuracy limits of the optical sensing system and that quantify the errors in position estimation.

  15. Polystyrene Core-Silica Shell Particles with Defined Nanoarchitectures as a Versatile Platform for Suspension Array Technology.

    PubMed

    Sarma, Dominik; Gawlitza, Kornelia; Rurack, Knut

    2016-04-19

    The need for rapid and high-throughput screening in analytical laboratories has led to significant growth in interest in suspension array technologies (SATs), especially with regard to cytometric assays targeting a low to medium number of analytes. Such SAT or bead-based assays rely on spherical objects that constitute the analytical platform. Usually, functionalized polymer or silica (SiO2) microbeads are used which each have distinct advantages and drawbacks. In this paper, we present a straightforward synthetic route to highly monodisperse SiO2-coated polystyrene core-shell (CS) beads for SAT with controllable architectures from smooth to raspberry- and multilayer-like shells by varying the molecular weight of poly(vinylpyrrolidone) (PVP), which was used as the stabilizer of the cores. The combination of both organic polymer core and a structurally controlled inorganic SiO2 shell in one hybrid particle holds great promises for flexible next-generation design of the spherical platform. The particles were characterized by electron microscopy (SEM, T-SEM, and TEM), thermogravimetry, flow cytometry, and nitrogen adsorption/desorption, offering comprehensive information on the composition, size, structure, and surface area. All particles show ideal cytometric detection patterns and facile handling due to the hybrid structure. The beads are endowed with straightforward modification possibilities through the defined SiO2 shells. We successfully implemented the particles in fluorometric SAT model assays, illustrating the benefits of tailored surface area which is readily available for small-molecule anchoring. Very promising assay performance was shown for DNA hybridization assays with quantification limits down to 8 fmol. PMID:27018430

  16. Genetic Diversity of O-Antigens in Hafnia alvei and the Development of a Suspension Array for Serotype Detection.

    PubMed

    Duan, Zhifeng; Niedziela, Tomasz; Lugowski, Czeslaw; Cao, Boyang; Wang, Tianwei; Xu, Lingling; Yang, Baopeng; Liu, Bin; Wang, Lei

    2016-01-01

    Hafnia alvei is a facultative and rod-shaped gram-negative bacterium that belongs to the Enterobacteriaceae family. Although it has been more than 50 years since the genus was identified, very little is known about variations among Hafnia species. Diversity in O-antigens (O-polysaccharide, OPS) is thought to be a major factor in bacterial adaptation to different hosts and situations and variability in the environment. Antigenic variation is also an important factor in pathogenicity that has been used to define clones within a number of species. The genes that are required to synthesize OPS are always clustered within the bacterial chromosome. A serotyping scheme including 39 O-serotypes has been proposed for H. alvei, but it has not been correlated with known OPS structures, and no previous report has described the genetic features of OPS. In this study, we obtained the genome sequences of 21 H. alvei strains (as defined by previous immunochemical studies) with different lipopolysaccharides. This is the first study to show that the O-antigen gene cluster in H. alvei is located between mpo and gnd in the chromosome. All 21 of the OPS gene clusters contain both the wzx gene and the wzy gene and display a large number of polymorphisms. We developed an O serotype-specific wzy-based suspension array to detect all 21 of the distinct OPS forms we identified in H. alvei. To the best of our knowledge, this is the first report to identify the genetic features of H. alvei antigenic variation and to develop a molecular technique to identify and classify different serotypes. PMID:27171009

  17. Genetic Diversity of O-Antigens in Hafnia alvei and the Development of a Suspension Array for Serotype Detection

    PubMed Central

    Duan, Zhifeng; Niedziela, Tomasz; Lugowski, Czeslaw; Cao, Boyang; Wang, Tianwei; Xu, Lingling; Yang, Baopeng; Liu, Bin; Wang, Lei

    2016-01-01

    Hafnia alvei is a facultative and rod-shaped gram-negative bacterium that belongs to the Enterobacteriaceae family. Although it has been more than 50 years since the genus was identified, very little is known about variations among Hafnia species. Diversity in O-antigens (O-polysaccharide, OPS) is thought to be a major factor in bacterial adaptation to different hosts and situations and variability in the environment. Antigenic variation is also an important factor in pathogenicity that has been used to define clones within a number of species. The genes that are required to synthesize OPS are always clustered within the bacterial chromosome. A serotyping scheme including 39 O-serotypes has been proposed for H. alvei, but it has not been correlated with known OPS structures, and no previous report has described the genetic features of OPS. In this study, we obtained the genome sequences of 21 H. alvei strains (as defined by previous immunochemical studies) with different lipopolysaccharides. This is the first study to show that the O-antigen gene cluster in H. alvei is located between mpo and gnd in the chromosome. All 21 of the OPS gene clusters contain both the wzx gene and the wzy gene and display a large number of polymorphisms. We developed an O serotype-specific wzy-based suspension array to detect all 21 of the distinct OPS forms we identified in H. alvei. To the best of our knowledge, this is the first report to identify the genetic features of H. alvei antigenic variation and to develop a molecular technique to identify and classify different serotypes. PMID:27171009

  18. Analysis of Rail Vehicle Suspension Spring with Special Emphasis on Curving, Tracking and Tractive Efforts

    NASA Astrophysics Data System (ADS)

    Kumbhalkar, M. A.; Bhope, D. V.; Vanalkar, A. V.

    2016-09-01

    The dynamics of the rail vehicle represents a balance between the forces acting between wheel and rail, the inertia forces and the forces exerted by suspension and articulation. Axial loading on helical spring causes vertical deflection at straight track but failures calls to investigate for lateral and longitudinal loading at horizontal and vertical curves respectively. Goods carrying vehicle has the frequent failures of middle axle inner suspension spring calls for investigation. The springs are analyzed for effect of stress concentration due to centripetal force and due to tractive and breaking effort. This paper also discusses shear failure analysis of spring at curvature and at uphill at various speeds for different loading condition analytically and by finite element analysis. Two mass rail vehicle suspension systems have been analyzed for vibration responses analytically using mathematical tool Matlab Simulink and the same will be evaluated using FFT vibration analyzer to find peak resonance in vertical, lateral and longitudinal direction. The results prove that the suspension acquires high repeated load in vertical and lateral direction due to tracking and curving causes maximum stress concentration on middle axle suspension spring as height of this spring is larger than end axle spring in primary suspension system and responsible for failure of middle axle suspension spring due to high stress acquisition.

  19. Frequency analysis of a semi-active suspension with magneto-rheological dampers

    NASA Astrophysics Data System (ADS)

    Andronic, Florin; Mihai, Ioan; Suciu, Cornel; Beniuga, Marius

    2015-02-01

    Suspension systems for motor vehicles are constantly evolving in order to ensure vehicle stability and traffic safety under all driving conditions. The present work aims to highlight the influence factors in the case of a quarter car model for semi-active suspensions. The functions that must be met by such suspension systems are first presented. Mathematical models for passive systems are first illustrated and then customized for the semi-active case. A simulation diagram was conceived for Matlab Simulink. The obtained simulation results allow conducting a frequency analysis of the passive and semi-active cases of the quarter car model. Various charts for Passive Suspension Transmissibility and for the Effect of Damping on Vertical Acceleration Response were obtained for both passive and semi-active situations. Analysis of obtained results allowed evaluating of the suspension systems behavior and their frequency dependence. Significant differences were found between the behaviors of passive and semi-active suspensions. It was found that semi-active suspensions ensure damping in accordance to the chosen control method, and are much more efficient than passive ones.

  20. Digital controller design: Analysis of the annular suspension pointing system

    NASA Technical Reports Server (NTRS)

    1977-01-01

    The annular suspension and pointing system (ASPS) a payload auxiliary pointing device of the space shuttle is briefly described along with the function of the digital controller. The equations of motion of a simplified plan planar model of the ASPS are derived. Results of computer simulations are discussed.

  1. Solar Array Verification Analysis Tool (SAVANT) Developed

    NASA Technical Reports Server (NTRS)

    Bailey, Sheila G.; Long, KIenwyn J.; Curtis, Henry B.; Gardner, Barbara; Davis, Victoria; Messenger, Scott; Walters, Robert

    1999-01-01

    Modeling solar cell performance for a specific radiation environment to obtain the end-of-life photovoltaic array performance has become both increasingly important and, with the rapid advent of new types of cell technology, more difficult. For large constellations of satellites, a few percent difference in the lifetime prediction can have an enormous economic impact. The tool described here automates the assessment of solar array on-orbit end-of-life performance and assists in the development and design of ground test protocols for different solar cell designs. Once established, these protocols can be used to calculate on-orbit end-of-life performance from ground test results. The Solar Array Verification Analysis Tool (SAVANT) utilizes the radiation environment from the Environment Work Bench (EWB) model developed by the NASA Lewis Research Center s Photovoltaic and Space Environmental Effects Branch in conjunction with Maxwell Technologies. It then modifies and combines this information with the displacement damage model proposed by Summers et al. (ref. 1) of the Naval Research Laboratory to determine solar cell performance during the course of a given mission. The resulting predictions can then be compared with flight data. The Environment WorkBench (ref. 2) uses the NASA AE8 (electron) and AP8 (proton) models of the radiation belts to calculate the trapped radiation flux. These fluxes are integrated over the defined spacecraft orbit for the duration of the mission to obtain the total omnidirectional fluence spectra. Components such as the solar cell coverglass, adhesive, and antireflective coatings can slow and attenuate the particle fluence reaching the solar cell. In SAVANT, a continuous slowing down approximation is used to model this effect.

  2. Approximate Analysis of Semiconductor Laser Arrays

    NASA Technical Reports Server (NTRS)

    Marshall, William K.; Katz, Joseph

    1987-01-01

    Simplified equation yields useful information on gains and output patterns. Theoretical method based on approximate waveguide equation enables prediction of lateral modes of gain-guided planar array of parallel semiconductor lasers. Equation for entire array solved directly using piecewise approximation of index of refraction by simple functions without customary approximation based on coupled waveguid modes of individual lasers. Improved results yield better understanding of laser-array modes and help in development of well-behaved high-power semiconductor laser arrays.

  3. Viscosity of carbon nanotube suspension using artificial neural networks with principal component analysis

    NASA Astrophysics Data System (ADS)

    Yousefi, Fakhri; Karimi, Hajir; Mohammadiyan, Somayeh

    2016-11-01

    This paper applies the model including back-propagation network (BPN) and principal component analysis (PCA) to estimate the effective viscosity of carbon nanotubes suspension. The effective viscosities of multiwall carbon nanotubes suspension are examined as a function of the temperature, nanoparticle volume fraction, effective length of nanoparticle and the viscosity of base fluids using artificial neural network. The obtained results by BPN-PCA model have good agreement with the experimental data.

  4. Metabolomics driven analysis of Erythrina lysistemon cell suspension culture in response to methyl jasmonate elicitation.

    PubMed

    Farag, Mohamed A; Mekky, Hattem; El-Masry, Sawsan

    2016-09-01

    An MS-based metabolomic approach was used to profile the secondary metabolite of the ornamental plant Erythrina lysistemon via ultra-performance liquid chromatography coupled to photodiode array detection and high resolution q-TOF mass spectrometry (UPLC-PDA-MS). Cultures maintained the capacity to produce E. lysistemon flavonoid subclasses with pterocarpans amounting for the most abundant ones suggesting that it could provide a resource of such flavonoid subclass. In contrast, alkaloids, major constituents of Erythrina genus, were detected at trace levels in suspension cultures. Methyl jasmonate (MeJA), phytohormone, was further supplied to culture with the aim of increasing secondary metabolites production and with metabolite profiles subjected to multivariate data analysis to evaluate its effect. Results revealed that triterpene i.e. oleanolic acid and fatty acid i.e. hydroxy-octadecadienoic acid were elicited in response to methyl jasmonate, whereas pterocarpans i.e., isoneorautenol showed a decline in response to elicitation suggesting for the induction of terpenoid biosynthetic pathway and concurrent with a down regulation of pterocarpans. In conclusion, a total of 53 secondary metabolites including 3 flavones, 12 isoflavones, 4 isoflavanones, 4 alkaloids, 11 pterocarpans, and 5 phenolic acids were identified. PMID:27504198

  5. Instantaneous physico-chemical analysis of suspension-based nanomaterials

    PubMed Central

    Meng, Fanxu; Ugaz, Victor M.

    2015-01-01

    High-throughput manufacturing of nanomaterial-based products demands robust online characterization and quality control tools capable of continuously probing the in-suspension state. But existing analytical techniques are challenging to deploy in production settings because they are primarily geared toward small-batch ex-situ operation in research laboratory environments. Here we introduce an approach that overcomes these limitations by exploiting surface complexation interactions that emerge when a micron-scale chemical discontinuity is established between suspended nanoparticles and a molecular tracer. The resulting fluorescence signature is easily detectable and embeds surprisingly rich information about composition, quantity, size, and morphology of nanoparticles in suspension independent of their agglomeration state. We show how this method can be straightforwardly applied to enable continuous sizing of commercial ZnO nanoparticles, and to instantaneously quantify the anatase and rutile composition of multicomponent TiO2 nanoparticle mixtures pertinent to photocatalysis and solar energy conversion. PMID:25923196

  6. Array Analysis of North Atlantic Microseisms

    NASA Astrophysics Data System (ADS)

    Craig, David; Bean, Chris; Möllhoff, Martin; Donne, Sarah; Lokmer, Ivan; Le Pape, Florian

    2016-04-01

    Oceans generate persistent low frequency background seismic signals known as microseisms through a mechanical coupling with the Earth's crust. Microseism energy originates as regions of low barometric pressure (depressions) over the oceans where it is transmitted to the sea-floor and propagates as elastic energy in the Earths crust. Consequently microseisms carry important meteorological information relating to both the atmosphere and the hydrosphere. The significance of microseisms as climate indicators has previously been investigated in several studies (Essen et al., 1999; Aster et al., 2010) and to estimate ocean wave parameters using onshore seismometer data (Bromirski et al., 1999). Also many modern seismological methods make use of microseism signals, for example "noise tomography" (Shapiro et al., 2005); spectral ratio techniques ; and cross-correlation techniques (Wapenaar et al., 2011; Brenguier et al., 2014). The continental shelf near Ireland is a known generation are for microseisms and an important region for European weather forecasting and climate studies. There has also been seismometers in the region since the 1960s. There is a single station in Valentia observatory in south-west Ireland and a small scale seismic array in Scotland which offer potential climate records for the region. To make use of this information it is first necessary to understand how microseisms recorded in Ireland relate to the local ocean wavefield. The WAVEOBS project was set established with three primary goals; to get a better fundamental understanding of microseism sources; to investigate the use of ocean generated microseisms as real time ocean wave height data; and to investigate their use as a climate proxy. Using spectral analysis and array methods the microseism wavefield in the North-East Atlantic near Ireland is described with reference to the ocean wavefield.

  7. A comparative analysis of passive twin tube and skyhook MRF dampers for motorcycle front suspensions

    NASA Astrophysics Data System (ADS)

    Ahmadian, Mehdi; Gravatt, John

    2004-07-01

    A comparative analysis between conventional passive twin tube dampers and skyhook-controlled magneto-rheological fluid (MRF) dampers for motorcycle front suspensions is provided, based on single axis testing in a damper test rig and suspension performance testing in road trials. Performance motorcycles, while boasting extremely light suspension components and competition-ready performance, have an inherent weakness in comfort, as the suspension systems are designed primarily for racing purposes. Front suspension acceleration and shock loading transmit directly through the front suspension triple clamp into the rider's arms and shoulders, causing rapid fatigue in shoulder muscles. Magneto-rheological fluid dampers and skyhook control systems offer an alternative to conventional sport motorcycle suspensions - both performance and comfort can be combined in the same package. Prototype MRF dampers designed and manufactured specifically for this application require no more space than conventional twin tube designs while adding only 1.7 pounds total weight to the system. The MRF dampers were designed for high controllability and low power consumption, two vital considerations for a motorcycle application. The tests conducted include the dampers' force-velocity curve testing in a damper test rig and suspension performance based on damper position, velocity, and acceleration measurement. Damper test rig results show the MRF dampers have a far greater range of adjustability than the test vehicle's OEM dampers. Combined with a modified sky-hook control system, the MRF dampers can greatly decrease the acceleration and shock loading transmitted to the rider through the handlebars while contributing performance in manners such as anti-dive under braking. Triple clamp acceleration measurements from a variety of staged road conditions, such as sinusoidal wave inputs, will be compared to subjective test-rider field reports to establish a correlation between rider fatigue and the

  8. Nanoparticle tracking analysis for the multiparameter characterization and counting of nanoparticle suspensions.

    PubMed

    Wright, Matthew

    2012-01-01

    Nanoparticle Tracking Analysis (NTA) provides direct and real time visualization, sizing, and counting of particulate materials between 10 nm and 1 μm in liquid suspension. The technique works on a particle-by-particle basis, relating the degree of movement under Brownian motion to the sphere equivalent hydrodynamic diameter particle size, allowing high resolution particle size distributions to be obtained within minutes. Here we describe application of NTA to the analysis of 100 nm polystyrene nanospheres in liquid suspension. The technique can be adapted for use with nearly all particulate materials with sizes between 10 nm and 1 μm.

  9. Rapid and sensitive suspension array for multiplex detection of organophosphorus pesticides and carbamate pesticides based on silica-hydrogel hybrid microbeads.

    PubMed

    Wang, Xuan; Mu, Zhongde; Shangguan, Fengqi; Liu, Ran; Pu, Yuepu; Yin, Lihong

    2014-05-30

    A technique for multiplex detection of organophosphorus pesticides and carbamate pesticides has been developed using a suspension array based on silica-hydrogel hybrid microbeads (SHHMs). The main advantage of SHHMs, which consist of both silica and hydrogel materials, is that they not only could be distinguished by their characteristic reflection peak originating from the stop-band of the photonic crystal but also have low non-specific adsorption of proteins. Using fluorescent immunoassay, the LODs for fenitrothion, chlorpyrifos-methyl, fenthion, carbaryl and metolcarb were measured to be 0.02ng/mL, 0.012ng/mL, 0.04ng/mL, 0.05ng/mL and 0.1ng/mL, respectively, all of which are much lower than the maximum residue limits, as reported in the European Union pesticides database. All the determination coefficients for these five pesticides were greater than 0.99, demonstrating excellent correlations. The suspension array was specific and had no significant cross-reactivity with other chemicals. The results for the detection of pesticide residues collected from agricultural samples using this method agree well with those from liquid chromatography-tandem mass spectrometry. Our results showed that this simple method is suitable for simultaneous detection of these five pesticides residues in fruits and vegetables.

  10. Digital controller design: Analysis of the annular suspension pointing system

    NASA Technical Reports Server (NTRS)

    Kuo, B. C.

    1979-01-01

    The Annular Suspension and Pointing System (ASPS) is a payload auxiliary pointing device of the Space Shuttle. The ASPS is comprised of two major subassemblies, a vernier and a coarse pointing subsystem. The experiment is attached to a mounting plate/rim combination which is suspended on magnetic bearing/actuators (MBA) strategically located about the rim. Fine pointing is achieved by gimballing the plate/rim within the MBA gaps. Control about the experiment line-of-sight is obtained through the use of a non-contacting rim drive and positioning torquer. All sensors used to close the servo loops on the vernier system are noncontacting elements. Therefore, the experiment is a free-flyer constrained only by the magnetic forces generated by the control loops.

  11. Rapid O serogroup identification of the ten most clinically relevant STECs by Luminex microbead-based suspension array

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Identification and serotyping of Shiga toxin-producing Escherichia coli during foodborne outbreaks can aid in matching clinical, food, and environmental isolates when trying to identify the sources of illness and ultimately food contamination. Herein we describe a Luminex microbead-based suspension ...

  12. Rapid Screening of Complex Chemical Samples via Capillary Array Analysis

    SciTech Connect

    D. S. Anex; D. W. Neyer

    1998-11-01

    This report is a summary of the results of a two-year Laboratory-Directed Research and Development (LDRD) project that developed instrumentation and methods for capillary array analysis. During the course of this project, a new capillary array electrochromatography instrument was developed to perform eight simultaneous separations and provide complementary chromatographic information from each column on a single sample.

  13. Identification of five Shiga toxin-producing Escherichia coli genes by Luminex microbead-based suspension array.

    PubMed

    Son, Insook; Binet, Rachel; Lin, Andrew; Hammack, Thomas S; Kase, Julie A

    2015-04-01

    To rapidly identify the presence of potentially virulent O157:H7 and non-O157 Shiga toxin-producing Escherichia coli (STEC), a PCR-based Luminex suspension assay was developed to detect the genes coding for four virulence factors (stx1, stx2, eae, and ehxA) plus the O157:H7-specific +93 uidA single nucleotide polymorphism.

  14. Effective Conductivity of a Suspension of Permeabilized Cells: A Theoretical Analysis

    PubMed Central

    Pavlin, Mojca; Miklavčič, Damijan

    2003-01-01

    During the electroporation cell membrane undergoes structural changes, which increase the membrane conductivity and consequently lead to a change in effective conductivity of a cell suspension. To correlate microscopic membrane changes to macroscopic changes in conductivity of a suspension, we analyzed the effective conductivity theoretically, using two different approaches: numerically, using the finite elements method; and analytically, by using the equivalence principle. We derived the equation, which connects membrane conductivity with effective conductivity of the cell suspension. The changes in effective conductivity were analyzed for different parameters: cell volume fraction, membrane and medium conductivity, critical transmembrane potential, and cell orientation. In our analysis we used a tensor form of the effective conductivity, thus taking into account the anisotropic nature of the cell electropermeabilization and rotation of the cells. To determine the effect of cell rotation, as questioned by some authors, the difference between conductivity of a cell suspension with normally distributed orientations and parallel orientation was also calculated, and determined to be <10%. The presented theory provides a theoretical basis for the analysis of measurements of the effective conductivity during electroporation. PMID:12885623

  15. Economic analysis of the unified heliostat array

    NASA Astrophysics Data System (ADS)

    1980-11-01

    The array (UHA) is comprised of conventional two-axis heliostats mounted on a terraced south-facing wall of a single structure. The arrangement of heliostats on the array is chosen to eliminate or control the degree of inter-heliostat shading and blocking. The UHA was investigated as to cost and optical performance. Two heliostats, the Veda Industrial Heliostat (VIH) and the Repowering Helistat were investigated in conjunction with the UHA. The UHA is found to be a viable candidate for solar thermal central receiver applications. The UHA-VIH combination was shown to provide very high flux densities and to be suitable for high temperature applications in the 1000 K to 2000 K range. These temperatures were shown to be achieve even with very small (1 MWt) collector fields.

  16. Geometric analysis and restitution of digital multispectral scanner data arrays

    NASA Technical Reports Server (NTRS)

    Baker, J. R.; Mikhail, E. M.

    1975-01-01

    An investigation was conducted to define causes of geometric defects within digital multispectral scanner (MSS) data arrays, to analyze the resulting geometric errors, and to investigate restitution methods to correct or reduce these errors. Geometric transformation relationships for scanned data, from which collinearity equations may be derived, served as the basis of parametric methods of analysis and restitution of MSS digital data arrays. The linearization of these collinearity equations is presented. Algorithms considered for use in analysis and restitution included the MSS collinearity equations, piecewise polynomials based on linearized collinearity equations, and nonparametric algorithms. A proposed system for geometric analysis and restitution of MSS digital data arrays was used to evaluate these algorithms, utilizing actual MSS data arrays. It was shown that collinearity equations and nonparametric algorithms both yield acceptable results, but nonparametric algorithms possess definite advantages in computational efficiency. Piecewise polynomials were found to yield inferior results.

  17. Performance Analysis of a NASA Integrated Network Array

    NASA Technical Reports Server (NTRS)

    Nessel, James A.

    2012-01-01

    The Space Communications and Navigation (SCaN) Program is planning to integrate its individual networks into a unified network which will function as a single entity to provide services to user missions. This integrated network architecture is expected to provide SCaN customers with the capabilities to seamlessly use any of the available SCaN assets to support their missions to efficiently meet the collective needs of Agency missions. One potential optimal application of these assets, based on this envisioned architecture, is that of arraying across existing networks to significantly enhance data rates and/or link availabilities. As such, this document provides an analysis of the transmit and receive performance of a proposed SCaN inter-network antenna array. From the study, it is determined that a fully integrated internetwork array does not provide any significant advantage over an intra-network array, one in which the assets of an individual network are arrayed for enhanced performance. Therefore, it is the recommendation of this study that NASA proceed with an arraying concept, with a fundamental focus on a network-centric arraying.

  18. Hybrid analysis for the Telescope Array

    NASA Astrophysics Data System (ADS)

    Ikeda, D.; Abu-Zayyad, T.; Allen, M.; Barcikowski, E.; Sagawa, H.; Stokes, B. T.; Thomson, G. B.

    2013-06-01

    The Telescope Array (TA) experiment is the largest Ultra-High Energy Cosmic Ray (UHECR) hybrid detector which consists of three stations of Fluorescence Detectors (FDs) and 507 Surface Detectors (SDs). The coincidence events which observed both by FD and SD is referred as hybrid event. The geometry and energy of each extensive air shower observed by hybrid mode are reconstructed with much more accurate resolution than monocular reconstruction alone. The hybrid event candidates were searched for by comparison of the trigger times between FD and SD in the good weather days from May 2008 to September 2010. By this search, we found 1306 hybrid events for BR, 1051 events for LR and 905 events for MD. In this paper, the performance of the hybrid technique and the energy spectra measured by using hybrid events are presented.

  19. Non-dimensionalised closed-form parametric analysis of semi-active vehicle suspensions using a quarter-car model

    NASA Astrophysics Data System (ADS)

    Ahmadian, Mehdi; Blanchard, Emmanuel

    2011-02-01

    This article provides a non-dimensionalised closed-form analysis of semi-active vehicle suspensions, using a quarter-car model. The derivation of the closed-form solutions for three indices that can be used for ride comfort, vehicle handling, and stability are presented based on non-dimensionalised suspension parameters. The behaviour of semi-active vehicle suspensions is evaluated using skyhook, groundhook, and hybrid control policies, and compared with passive suspensions. The relationship between vibration isolation, suspension deflection, and road holding is studied, using three performance indices based on the mean square of the sprung mass acceleration, rattle space, and tyre deflection, respectively. The results of the study indicate that the hybrid control policy yields significantly better comfort than a passive suspension, without reducing the road-holding quality or increasing the suspension displacement for typical passenger cars. The results also indicate that for typical passenger cars, the hybrid control policy results in a better compromise between comfort, road holding and suspension travel requirements than both the skyhook and groundhook control methods.

  20. International Space Station 2A Array Modal Analysis

    NASA Technical Reports Server (NTRS)

    Laible, Michael; Fitzpatrick, Kristin; Grygier, Michael

    2012-01-01

    On December 9th 2009, the International Space Station (ISS) 2A solar array mast experienced prolonged longeron shadowing during a Soyuz undocking. Analytical reconstruction of induced thermal and dynamic structural loads showed an exceedance of the mast buckling limit. Possible structural damage to the solar array mast could have occurred during this event. A Low fidelity video survey of the 2A mast showed no obvious damage of the mast longerons or battens. The decision was made to conduct an on-orbit dynamic test of the 2A array on December 18th, 2009. The test included thruster pluming on the array while photogrammetry data was recorded. The test was similar to other Dedicated Thruster Firings (DTFs) that were performed to measure structural frequency and damping of a solar array. Results of the DTF indicated lower frequency mast modes than model predictions, thus leading to speculation of mast damage. A detailed nonlinear analysis was performed on the 2A array model to assess possible solutions to modal differences. The setup of the parametric nonlinear trade study included the use of a detailed array model and the reduced mass and stiffness matrices of the entire ISS being applied to the array interface. The study revealed that the array attachment structure is nonlinear and thus was the source of error in the model prediction of mast modes. In addition, a detailed study was performed to determine mast mode sensitivity to mast longeron damage. This sensitivity study was performed to assess if the ISS program has sufficient instrumentation for mast damage detection.

  1. Modeling and analysis of electrorheological suspensions in shear flow

    NASA Astrophysics Data System (ADS)

    Seo, Youngwook P.; Chua, Wei Huan; Seo, Yongsok

    2015-05-01

    A new rheological model was applied to the analysis of the electrorheological behavior of a fluid containing silica nanoparticle-decorated polyaniline nanofibers. A model's predictions were compared with the experimental data, revealing that the proposed model correctly predicted the shear stress behavior both quantitatively and qualitatively. The shear stress data of the electrorheological fluid showing aligned fibers' structural reformation as a function of the shear rate agreed well with the new model which required fewer parameters than the CCJ (Cho-Choi-Jhon) model. The static yield stress was found to be quadratically dependent on the field strength, in agreement with the predictions of the polarization model. A scaling function was used to model the yield stress behavior of the electrorheological fluid over a range of electric fields, and it correctly predicted the static yield stress behavior both quantitatively and qualitatively.

  2. Performance analysis of a semi-active railway vehicle suspension featuring MR dampers

    NASA Astrophysics Data System (ADS)

    Kim, Hwan-Choong; Choi, Seung-Bok; Lee, Gyu-Seop; An, Chae-Hun; You, Won-Hee

    2014-03-01

    This paper presents performance analysis of semi-active railway vehicle suspension system using MR damper. In order to achieve this goal, a mathematical dynamic model of railway vehicle is derived by integrating car body, bogie frame and wheel-set which can be able to represent lateral, yaw and roll motion. Based on this model, the dynamic range of MR damper at the railway secondary suspension system and design parameters of MR damper are calculated. Subsequently, control performances of railway vehicle including car body lateral motion and acceleration of MR damper are evaluated through computer simulations. Then, the MR damper is manufactured to be retrofitted with the real railway vehicle and its characteristics are experimentally measured. Experimental performance of MR damper is assessed using test rig which is composed of a car body and two bogies.

  3. Neural network based analysis for chemical sensor arrays

    SciTech Connect

    Hashem, S.; Keller, P.E.; Kouzes, R.T.; Kangas, L.J.

    1995-04-01

    Compact, portable systems capable of quickly identifying contaminants in the field are of great importance when monitoring the environment. In this paper, we examine the effectiveness of using artificial neural networks for real-time data analysis of a sensor array. Analyzing the sensor data in parallel may allow for rapid identification of contaminants in the field without requiring highly selective individual sensors. We use a prototype sensor array which consists of nine tin-oxide Taguchi-type sensors, a temperature sensor, and a humidity sensor. We illustrate that by using neural network based analysis of the sensor data, the selectivity of the sensor array may be significantly improved, especially when some (or all) the sensors are not highly selective.

  4. Analysis of Dynamic Stiffness Effect of Primary Suspension Helical Springs on Railway Vehicle Vibration

    NASA Astrophysics Data System (ADS)

    Sun, W.; Thompson, D. J.; Zhou, J.; Gong, D.

    2016-09-01

    Helical springs within the primary suspension are critical components for isolating the whole vehicle system from vibration generated at the wheel/rail contact. As train speeds increase, the frequency region of excitation becomes larger, and a simplified static stiffness can no longer represent the real stiffness property in a vehicle dynamic model. Coil springs in particular exhibit strong internal resonances, which lead to high vibration amplitudes within the spring itself as well as degradation of the vibration isolation. In this paper, the dynamic stiffness matrix method is used to determine the dynamic stiffness of a helical spring from a vehicle primary suspension. Results are confirmed with a finite element analysis. Then the spring dynamic stiffness is included within a vehicle-track coupled dynamic model of a high speed train and the effect of the dynamic stiffening of the spring on the vehicle vibration is investigated. It is shown that, for frequencies above about 50 Hz, the dynamic stiffness of the helical spring changes sharply. Due to this effect, the vibration transmissibility increases considerably which results in poor vibration isolation of the primary suspension. Introducing a rubber layer in series with the coil spring can attenuate this effect.

  5. Studying Mixing in Non-Newtonian Blue Maize Flour Suspensions Using Color Analysis

    PubMed Central

    Trujillo-de Santiago, Grissel; Rojas-de Gante, Cecilia; García-Lara, Silverio; Ballescá-Estrada, Adriana; Alvarez, Mario Moisés

    2014-01-01

    Background Non-Newtonian fluids occur in many relevant flow and mixing scenarios at the lab and industrial scale. The addition of acid or basic solutions to a non-Newtonian fluid is not an infrequent operation, particularly in Biotechnology applications where the pH of Non-Newtonian culture broths is usually regulated using this strategy. Methodology and Findings We conducted mixing experiments in agitated vessels using Non-Newtonian blue maize flour suspensions. Acid or basic pulses were injected to reveal mixing patterns and flow structures and to follow their time evolution. No foreign pH indicator was used as blue maize flours naturally contain anthocyanins that act as a native, wide spectrum, pH indicator. We describe a novel method to quantitate mixedness and mixing evolution through Dynamic Color Analysis (DCA) in this system. Color readings corresponding to different times and locations within the mixing vessel were taken with a digital camera (or a colorimeter) and translated to the CIELab scale of colors. We use distances in the Lab space, a 3D color space, between a particular mixing state and the final mixing point to characterize segregation/mixing in the system. Conclusion and Relevance Blue maize suspensions represent an adequate and flexible model to study mixing (and fluid mechanics in general) in Non-Newtonian suspensions using acid/base tracer injections. Simple strategies based on the evaluation of color distances in the CIELab space (or other scales such as HSB) can be adapted to characterize mixedness and mixing evolution in experiments using blue maize suspensions. PMID:25401332

  6. Thermoelastic analysis of solar cell arrays and their material properties

    NASA Technical Reports Server (NTRS)

    Salama, M. A.; Rowe, W. M.; Yasui, R. K.

    1973-01-01

    A thermoelastic stress analysis procedure is reported for predicting the thermally induced stresses and failures in silicon solar cell arrays. A prerequisite for the analysis is the characterization of the temperature-dependent thermal and mechanical properties of the solar cell materials. Extensive material property testing was carried out in the temperature range -200 to +200 C for the filter glass, P- and N-type silicon, interconnector metals, solder, and several candidate silicone rubber adhesives. The analysis procedure is applied to several solar cell array design configurations. Results of the analysis indicate the optimum design configuration, with respect to compatible materials, effect of the solder coating, and effect of the interconnector geometry. Good agreement was found between results of the analysis and the test program.

  7. Analysis and simulation of a magnetic bearing suspension system for a laboratory model annular momentum control device

    NASA Technical Reports Server (NTRS)

    Groom, N. J.; Woolley, C. T.; Joshi, S. M.

    1981-01-01

    A linear analysis and the results of a nonlinear simulation of a magnetic bearing suspension system which uses permanent magnet flux biasing are presented. The magnetic bearing suspension is part of a 4068 N-m-s (3000 lb-ft-sec) laboratory model annular momentum control device (AMCD). The simulation includes rigid body rim dynamics, linear and nonlinear axial actuators, linear radial actuators, axial and radial rim warp, and power supply and power driver current limits.

  8. Digital interactive image analysis by array processing

    NASA Technical Reports Server (NTRS)

    Sabels, B. E.; Jennings, J. D.

    1973-01-01

    An attempt is made to draw a parallel between the existing geophysical data processing service industries and the emerging earth resources data support requirements. The relationship of seismic data analysis to ERTS data analysis is natural because in either case data is digitally recorded in the same format, resulting from remotely sensed energy which has been reflected, attenuated, shifted and degraded on its path from the source to the receiver. In the seismic case the energy is acoustic, ranging in frequencies from 10 to 75 cps, for which the lithosphere appears semi-transparent. In earth survey remote sensing through the atmosphere, visible and infrared frequency bands are being used. Yet the hardware and software required to process the magnetically recorded data from the two realms of inquiry are identical and similar, respectively. The resulting data products are similar.

  9. Analysis of an off road 4WD vehicle's suspension system modification - Case study of aftermarket suspension lift and modification of wheel track size

    NASA Astrophysics Data System (ADS)

    Ross, J.; Hazrat, M. A.; Rasul, M. G.

    2016-07-01

    In this research, a four wheel drive (4WD) suspension of a vehicle has been modified by increasing the ride height to investigate stability and cornering potential of the vehicle through load transfer and variation of roll angle. Further investigation has been conducted to observe the characteristics which are deemed desirable for off road application but detrimental to the on road application. The Constant Radius Cornering Test (CRCT) was chosen as a base method for experimental investigation to observe the effect of the suspension modifications. The test was carried out by undertaking a known radius and cambered corner at a constant speed. For this test, the acceleration and gyroscopic data were measured to check and compare the accuracy of the analysis performed by OptimumDynamics model. The tests were conducted by means of negotiating the curve at the speed of 80 km/h and it was gradually achieved to allow a good consensus of the amount of body roll the vehicle experienced. Using a surveyor's wheel, the radius of the corner was estimated as 160 m and using the gyroscopic sensor, the corner camber was measured at 4 degrees. While comparing the experimental results with the simulation results, the experimental constraints led to higher values than those of the analytical results. The total load transfer reduced by 2.9% with the increased track size. It has been observed that the dynamic load transfer component is lesser than the standard suspension with the aftermarket suspension lift and the upgraded anti-roll bar (ARB). With the simulation of the fitment of the other modifications aimed to improve the characteristics of the raised vehicle, the vehicle showed a reduced tendency towards roll angle due to the stiffened anti-roll bar and the maximum increased wheel track demonstrated reduced lateral load transfer and body roll. Even with these modifications however, the decrease in load transfer is minimal in comparison to what was expected.

  10. Glycomic analysis: an array of technologies

    PubMed Central

    Krishnamoorthy, Lakshmi; Mahal, Lara K.

    2009-01-01

    Carbohydrates encode biological information necessary for cellular function. The structural diversity and complexity of these sugar residues have necessitated the creation of novel methodologies for their study. This review highlights recent technological advancements that are starting to unravel the intricate web of carbohydrate biology. New methods for the analysis of both glycoconjugates and glycan structures are discussed. With the use of these innovative tools, the field of glycobiology is poised to take center-stage in the post-genomic era of modern biology and medicine. PMID:19728746

  11. Glycomic analysis: an array of technologies.

    PubMed

    Krishnamoorthy, Lakshmi; Mahal, Lara K

    2009-09-18

    Carbohydrates encode biological information necessary for cellular function. The structural diversity and complexity of these sugar residues have necessitated the creation of novel methodologies for their study. This review highlights recent technological advancements that are starting to unravel the intricate web of carbohydrate biology. New methods for the analysis of both glycoconjugates and glycan structures are discussed. With the use of these innovative tools, the field of glycobiology is poised to take center-stage in the postgenomic era of modern biology and medicine.

  12. Analysis of Enriched Uranyl Nitrate in Nested Annular Tank Array

    SciTech Connect

    John D. Bess; James D. Cleaver

    2009-06-01

    Two series of experiments were performed at the Rocky Flats Critical Mass Laboratory during the 1980s using highly enriched (93%) uranyl nitrate solution in annular tanks. [1, 2] Tanks were of typical sizes found in nuclear production plants. Experiments looked at tanks of varying radii in a co-located set of nested tanks, a 1 by 2 array, and a 1 by 3 array. The co-located set of tanks had been analyzed previously [3] as a benchmark for inclusion within the International Handbook of Evaluated Criticality Safety Benchmark Experiments. [4] The current study represents the benchmark analysis of the 1 by 3 array of a series of nested annular tanks. Of the seventeen configurations performed in this set of experiments, twelve were evaluated and nine were judged as acceptable benchmarks.

  13. Thawing Frozen Robust Multi-array Analysis (fRMA)

    PubMed Central

    2011-01-01

    Background A novel method of microarray preprocessing - Frozen Robust Multi-array Analysis (fRMA) - has recently been developed. This algorithm allows the user to preprocess arrays individually while retaining the advantages of multi-array preprocessing methods. The frozen parameter estimates required by this algorithm are generated using a large database of publicly available arrays. Curation of such a database and creation of the frozen parameter estimates is time-consuming; therefore, fRMA has only been implemented on the most widely used Affymetrix platforms. Results We present an R package, frmaTools, that allows the user to quickly create his or her own frozen parameter vectors. We describe how this package fits into a preprocessing workflow and explore the size of the training dataset needed to generate reliable frozen parameter estimates. This is followed by a discussion of specific situations in which one might wish to create one's own fRMA implementation. For a few specific scenarios, we demonstrate that fRMA performs well even when a large database of arrays in unavailable. Conclusions By allowing the user to easily create his or her own fRMA implementation, the frmaTools package greatly increases the applicability of the fRMA algorithm. The frmaTools package is freely available as part of the Bioconductor project. PMID:21923903

  14. Analysis of Camera Arrays Applicable to the Internet of Things.

    PubMed

    Yang, Jiachen; Xu, Ru; Lv, Zhihan; Song, Houbing

    2016-03-22

    The Internet of Things is built based on various sensors and networks. Sensors for stereo capture are essential for acquiring information and have been applied in different fields. In this paper, we focus on the camera modeling and analysis, which is very important for stereo display and helps with viewing. We model two kinds of cameras, a parallel and a converged one, and analyze the difference between them in vertical and horizontal parallax. Even though different kinds of camera arrays are used in various applications and analyzed in the research work, there are few discussions on the comparison of them. Therefore, we make a detailed analysis about their performance over different shooting distances. From our analysis, we find that the threshold of shooting distance for converged cameras is 7 m. In addition, we design a camera array in our work that can be used as a parallel camera array, as well as a converged camera array and take some images and videos with it to identify the threshold.

  15. Analysis of Camera Arrays Applicable to the Internet of Things.

    PubMed

    Yang, Jiachen; Xu, Ru; Lv, Zhihan; Song, Houbing

    2016-01-01

    The Internet of Things is built based on various sensors and networks. Sensors for stereo capture are essential for acquiring information and have been applied in different fields. In this paper, we focus on the camera modeling and analysis, which is very important for stereo display and helps with viewing. We model two kinds of cameras, a parallel and a converged one, and analyze the difference between them in vertical and horizontal parallax. Even though different kinds of camera arrays are used in various applications and analyzed in the research work, there are few discussions on the comparison of them. Therefore, we make a detailed analysis about their performance over different shooting distances. From our analysis, we find that the threshold of shooting distance for converged cameras is 7 m. In addition, we design a camera array in our work that can be used as a parallel camera array, as well as a converged camera array and take some images and videos with it to identify the threshold. PMID:27011189

  16. Analysis of Camera Arrays Applicable to the Internet of Things

    PubMed Central

    Yang, Jiachen; Xu, Ru; Lv, Zhihan; Song, Houbing

    2016-01-01

    The Internet of Things is built based on various sensors and networks. Sensors for stereo capture are essential for acquiring information and have been applied in different fields. In this paper, we focus on the camera modeling and analysis, which is very important for stereo display and helps with viewing. We model two kinds of cameras, a parallel and a converged one, and analyze the difference between them in vertical and horizontal parallax. Even though different kinds of camera arrays are used in various applications and analyzed in the research work, there are few discussions on the comparison of them. Therefore, we make a detailed analysis about their performance over different shooting distances. From our analysis, we find that the threshold of shooting distance for converged cameras is 7 m. In addition, we design a camera array in our work that can be used as a parallel camera array, as well as a converged camera array and take some images and videos with it to identify the threshold. PMID:27011189

  17. Off-road motorbike performance analysis using a rear semi-active suspension

    NASA Astrophysics Data System (ADS)

    Lozoya-Santos, Jorge de J.; Cervantes-Muñoz, Damián.; Ramírez Mendoza, Ricardo

    2015-04-01

    The topic of this paper is the analysis of a control system for a semi active rear suspension in an off-road 2-wheel vehicle. Several control methods are studied, as well as the recently proposed Frequency Estimation Based (FEB) algorithm. The test motorcycle dynamics, as well as the passive, semi active, and the algorithm controlled shock absorber models are loaded into BikeSim, a professional two-wheeled vehicle simulation software, and tested in several road conditions. The results show a detailed comparison of the theoretical performance of the different control approaches in a novel environment for semi active dampers.

  18. argyle: An R Package for Analysis of Illumina Genotyping Arrays.

    PubMed

    Morgan, Andrew P

    2015-12-18

    Genotyping microarrays are an important and widely-used tool in genetics. I present argyle, an R package for analysis of genotyping array data tailored to Illumina arrays. The goal of the argyle package is to provide simple, expressive tools for nonexpert users to perform quality checks and exploratory analyses of genotyping data. To these ends, the package consists of a suite of quality-control functions, normalization procedures, and utilities for visually and statistically summarizing such data. Format-conversion tools allow interoperability with popular software packages for analysis of genetic data including PLINK, R/qtl and DOQTL. Detailed vignettes demonstrating common use cases are included as supporting information. argyle bridges the gap between the low-level tasks of quality control and high-level tasks of genetic analysis. It is freely available at https://github.com/andrewparkermorgan/argyle and has been submitted to Bioconductor.

  19. Modelling and characteristic analysis of tri-axle trucks with hydraulically interconnected suspensions

    NASA Astrophysics Data System (ADS)

    Ding, Fei; Han, Xu; Luo, Zhen; Zhang, Nong

    2012-12-01

    In this paper, a new hydraulically interconnected suspension (HIS) system is proposed for the implementation of a resistance control for the pitch and bounce modes of tri-axle heavy trucks. A lumped-mass half-truck model is established using the free-body diagram method. The equations of motion of a mechanical and hydraulic coupled system are developed by incorporating the hydraulic strut forces into the mechanical subsystem as externally applied forces. The transfer matrix method (TMM) is used to evaluate the impedance matrix of the hydraulic subsystem consisting of models of fluid pipes, damper valves, accumulators, and three-way junctions. The TMM is further applied to find the quantitative relationships between the hydraulic strut forces and boundary flow of the mechanical-fluid interactive subsystem. The modal analysis method is employed to perform the vibration analysis between the trucks with the conventional suspension and the proposed HIS. Comparison analysis focuses on free vibration with identified eigenvalues and eigenvectors, isolation vibration capacity, and force vibration in terms of the power spectrum density responses. The obtained results show the effectiveness of the proposed HIS system in reducing the pitch motion of sprung mass and simultaneously maintaining the ride comfort. The pitch stiffness is increased while the bounce stiffness is slightly softened. The peak values of sprung mass and wheel hop motions are greatly reduced, and the vibration decay rate of sprung mass is also significantly increased.

  20. Analysis of systolic and systolic-type arrays

    SciTech Connect

    Jover, J.M.

    1986-01-01

    Synchronous, multiprocessor systems interconnected by fixed links are studied. These special-purpose systems, called systolic-type arrays, perform specific algorithms at a higher throughput rate than the sequential architecture of van Neumann. The main contributions of this thesis are the analysis of systolic-type arrays, and the design of one such complex system. In the analysis problem the topology of the network, the function performed by each processor (including timing information), and the input data streams are given. I/O algorithm performed by the array, and the iteration interval (i.e., the time between two consecutive input samples) are to be determined. Solution to the analysis problem turns out to be based on the simple, at least in retrospect, observation that analysis is the reverse of synthesis (design). In design, the start is with a mathematical algorithm and a representation of it as a signal flow graph (SFG) in which the computations (function evaluations) are presented by delay-free (instantaneous) blocks and the index shifts in the sequences processed by the algorithm are all lumped into so-called z/sup -1/ blocks. In the analysis problem, start is also with a physical implementation described by its computational blocks, their associated processing times, and their interconnections. Also presented is parallel architecture for the measurement update step of the Kalman filter, which estimates a vector parameter.

  1. Applications of nylon membrane arrays to gene expression analysis.

    PubMed

    Cox, J M

    2001-04-01

    Gene expression analyses by hybridization of probes derived from mRNA to cDNA targets arrayed on a nylon membranes have been performed with increasing frequency and success over the last decade. While the initial costs of generating arrays are moderately high, they are now available commercially as complete packages which include the membranes and associated image analysis software for acquisition and processing of the data. Arrays can be used to generate information concerning the expression of mRNA from cells treated with various agents or from different tissues, e.g. comparing diseased with normal controls. To date, many groups, including immunologists, have used this technology to examine gene expression within their area of biological interest. The main characteristic of these systems is the large amount of data generated, since the expression of many thousands of genes are measured in parallel. The main practical issues are sensitivity of detection, reproducibility, comparability with other systems (e.g. Northern blots) and processing of data. Some of the significant applications of nylon array technology to date are reviewed in this chapter, and with these issues in mind, we include a discussion of our own experiences in this area.

  2. Array-Pattern-Match Compiler for Opportunistic Data Analysis

    NASA Technical Reports Server (NTRS)

    James, Mark

    2006-01-01

    A computer program has been written to facilitate real-time sifting of scientific data as they are acquired to find data patterns deemed to warrant further analysis. The patterns in question are of a type denoted array patterns, which are specified by nested parenthetical expressions. [One example of an array pattern is ((>3) 0 (not=1)): this pattern matches a vector of at least three elements, the first of which exceeds 3, the second of which is 0, and the third of which does not equal 1.] This program accepts a high-level description of a static array pattern and compiles a highly optimal and compact other program to determine whether any given instance of any data array matches that pattern. The compiler implemented by this program is independent of the target language, so that as new languages are used to write code that processes scientific data, they can easily be adapted to this compiler. This program runs on a variety of different computing platforms. It must be run in conjunction with any one of a number of Lisp compilers that are available commercially or as shareware.

  3. Erratum to: Automated Sample Preparation Method for Suspension Arrays using Renewable Surface Separations with Multiplexed Flow Cytometry Fluorescence Detection

    SciTech Connect

    Grate, Jay W.; Bruckner-Lea, Cindy J.; Jarrell, Ann E.; Chandler, Darrell P.

    2003-04-10

    In this paper we describe a new method of automated sample preparation for multiplexed biological analysis systems that use flow cytometry fluorescence detection. In this approach, color-encoded microspheres derivatized to capture particular biomolecules are temporarily trapped in a renewable surface separation column to enable perfusion with sample and reagents prior to delivery to the detector. This method provides for separation of the biomolecules of interest from other sample matrix components as well as from labeling solutions.

  4. Analysis and design of low profile multiband multifunctional antenna arrays

    NASA Astrophysics Data System (ADS)

    Hunsicker, Walker F.

    Light-weight phased array antennas for aerospace and mobile applications require utilizing the same antenna aperture to provide multiple functions with dissimilar radiation pattern specifications (e.g., multiband operation for communications and tracking). Multi-functional antennas provide advantages over aggregate antenna clusters by reducing space requirements, and can aid in the optimal placement of all required apertures to provide adequate isolation between channels. Furthermore, the combination of antenna apertures into a common geometry mitigates co-site installation issues by addressing interference within the integrated radiator design itself as opposed to the extensive analysis which is required to configure multiple radiators in close proximity. The combination of multiple radiators into a single aperture can only be achieved with the proper selection of antenna topology and accompanying feed network design. This research proposes a new technique for the design of multiband arrays in which a common aperture is used. Highlighted by this method is the integration of a tri-band array comprised of an X-band (12 GHz) microstrip patch array on a superstrate above printed dual-band (1 and 2 GHz) slot loop antenna arrays in an octave-spaced lattice. The selection of a ground backing reflector is considered for improved gain and system packaging, but restricts the utility of the design principally due to the lambda/4 depth of the ground plane. Therefore, a novel multiband high impedance surfaces (HIS) is proposed to load the slot apertures for reduced height. The novel techniques proposed here will enable the design of a low profile and conformal single aperture supporting multi-band and multi-functional operations.

  5. Spectral Analysis of Broadband Seismic Array Data, Tien Shan

    NASA Astrophysics Data System (ADS)

    Shamshy, S.; Pavlis, G. L.

    2003-12-01

    We used a spectral analysis method to examine amplitude variations of body waves recorded in the Tien Shan region of central Asia. We used broadband data from the Kyrgyz Network (KNET), Kazakhstan Network (KZNET), and from a set of temporary, PASSCAL stations operated from 1997-2000 we refer to as the Ghengis array. A spectral ratio method similar to that used by Wilson and Pavlis (2000) was employed, but with station AAK used as a reference instead of the array median. Spectral ratios were estimated for all teleseismic events and a larger, intermediate depth events from the Hindu-Kush region for all three-components of ground motion and total signal strength on all components. Results are visualized by maps of amplitude for various frequency bands and through the 4-D animation method introduced by Wilson and Pavlis (2000). Data from Hindu-Kush events showed amplitude variations as much as a factor of 100 across the study area with a strong frequency dependence. The largest variations were at the highest frequencies observed near 15 Hz. Stations in the northwestern part of the Tien Shan array show little variation in amplitude relative to the reference station, AAK. In the central and eastern part of the array, the amplitude estimates are significantly smaller at all frequencies. In contrast, for stations in the western Tien Shan near the Talas-Fergana Fault, and the southern Tien Shan near the Tarim Basin, the amplitude values become much larger than the reference site. The teleseismic data show a different pattern and show a somewhat smaller, overall amplitude variation at comparable frequencies. The northern part of the array again shows small variations relative to the reference stations. There are some amplifications in the southern stations of the array, especially in the Tarim Basin. The higher frequency observations that show large amplifications at stations in the Tarim Basin are readily explained by site effects due to the thick deposits of sediments

  6. [Determination of Azospirillum Brasilense Cells With Bacteriophages via Electrooptical Analysis of Microbial Suspensions].

    PubMed

    Gulii, O I; Karavayeva, O A; Pavlii, S A; Sokolov, O I; Bunin, V D; Ignatov, O V

    2015-01-01

    The dependence-of changes in the electrooptical properties of Azospirillum brasilense cell suspension Sp7 during interaction with bacteriophage ΦAb-Sp7 on the number and time of interactions was studied. Incubation of cells with bacteriophage significantly changed the electrooptical signal within one minute. The selective effect of bacteriophage ΦAb on 18 strains of bacteria of the genus Azospirillum was studied: A. amazonense Ami4, A. brasilense Sp7, Cd, Sp107, Sp245, Jm6B2, Brl4, KR77, S17, S27, SR55, SR75, A. halopraeferans Au4, A. irakense KBC1, K A3, A. lipoferum Sp59b, SR65 and RG20a. We determined the limit of reliable determination of microbial cells infected with bacteriophage: - 10(4) cells/mL. The presence of foreign cell cultures of E. coli B-878 and E. coli XL-1 did not complicate the detection of A brasilense Sp7 cells with the use of bacteriophage ΦAb-Sp7. The results demonstrated that bacteriophage (ΦAb-Sp7 can be used for the detection of Azospirillum microbial cells via t electrooptical analysis of cell suspensions.

  7. Guidelines for Optimisation of a Multiplex Oligonucleotide Ligation-PCR for Characterisation of Microbial Pathogens in a Microsphere Suspension Array

    PubMed Central

    Wuyts, Véronique; Roosens, Nancy H. C.; Marchal, Kathleen; De Keersmaecker, Sigrid C. J.

    2015-01-01

    With multiplex oligonucleotide ligation-PCR (MOL-PCR) different molecular markers can be simultaneously analysed in a single assay and high levels of multiplexing can be achieved in high-throughput format. As such, MOL-PCR is a convenient solution for microbial detection and identification assays where many markers should be analysed, including for routine further characterisation of an identified microbial pathogenic isolate. For an assay aimed at routine use, optimisation in terms of differentiation between positive and negative results and of cost and effort is indispensable. As MOL-PCR includes a multiplex ligation step, followed by a singleplex PCR and analysis with microspheres on a Luminex device, several parameters are accessible for optimisation. Although MOL-PCR performance may be influenced by the markers used in the assay and the targeted bacterial species, evaluation of the method of DNA isolation, the probe concentration, the amount of microspheres, and the concentration of reporter dye is advisable in the development of any MOL-PCR assay. Therefore, we here describe our observations made during the optimisation of a 20-plex MOL-PCR assay for subtyping of Salmonella Typhimurium with the aim to provide a possible workflow as guidance for the development and optimisation of a MOL-PCR assay for the characterisation of other microbial pathogens. PMID:25705689

  8. Morphology Analysis of Si Island Arrays on Si(001)

    PubMed Central

    2010-01-01

    The formation of nanometer-scale islands is an important issue for bottom-up-based schemes in novel electronic, optoelectronic and magnetoelectronic devices technology. In this work, we present a detailed atomic force microscopy analysis of Si island arrays grown by molecular beam epitaxy. Recent reports have shown that self-assembled distributions of fourfold pyramid-like islands develop in 5-nm thick Si layers grown at substrate temperatures of 650 and 750°C on HF-prepared Si(001) substrates. Looking for wielding control and understanding the phenomena involved in this surface nanostructuring, we develop and apply a formalism that allows for processing large area AFM topographic images in a shot, obtaining surface orientation maps with specific information on facets population. The procedure reveals some noticeable features of these Si island arrays, e.g. a clear anisotropy of the in-plane local slope distributions. Total island volume analysis also indicates mass transport from the substrate surface to the 3D islands, a process presumably related to the presence of trenches around some of the pyramids. Results are discussed within the framework of similar island arrays in homoepitaxial and heteroepitaxial semiconductor systems. PMID:21170139

  9. Digital Control Analysis and Design of a Field-Sensed Magnetic Suspension System

    PubMed Central

    Li, Jen-Hsing; Chiou, Juing-Shian

    2015-01-01

    Magnetic suspension systems are mechatronic systems and crucial in several engineering applications, such as the levitation of high-speed trains, frictionless bearings, and wind tunnels. Magnetic suspension systems are nonlinear and unstable systems; therefore, they are suitable educational benchmarks for testing various modeling and control methods. This paper presents the digital modeling and control of magnetic suspension systems. First, the magnetic suspension system is stabilized using a digital proportional-derivative controller. Subsequently, the digital model is identified using recursive algorithms. Finally, a digital mixed linear quadratic regulator (LQR)/H∞ control is adopted to stabilize the magnetic suspension system robustly. Simulation examples and a real-world example are provided to demonstrate the practicality of the study results. In this study, a digital magnetic suspension system model was developed and reviewed. In addition, equivalent state and output feedback controls for magnetic suspension systems were developed. Using this method, the controller design for magnetic suspension systems was simplified, which is the novel contribution of this study. In addition, this paper proposes a complete digital controller design procedure for magnetic suspension systems. PMID:25781508

  10. Digital control analysis and design of a field-sensed magnetic suspension system.

    PubMed

    Li, Jen-Hsing; Chiou, Juing-Shian

    2015-03-13

    Magnetic suspension systems are mechatronic systems and crucial in several engineering applications, such as the levitation of high-speed trains, frictionless bearings, and wind tunnels. Magnetic suspension systems are nonlinear and unstable systems; therefore, they are suitable educational benchmarks for testing various modeling and control methods. This paper presents the digital modeling and control of magnetic suspension systems. First, the magnetic suspension system is stabilized using a digital proportional-derivative controller. Subsequently, the digital model is identified using recursive algorithms. Finally, a digital mixed linear quadratic regulator (LQR)/H∞ control is adopted to stabilize the magnetic suspension system robustly. Simulation examples and a real-world example are provided to demonstrate the practicality of the study results. In this study, a digital magnetic suspension system model was developed and reviewed. In addition, equivalent state and output feedback controls for magnetic suspension systems were developed. Using this method, the controller design for magnetic suspension systems was simplified, which is the novel contribution of this study. In addition, this paper proposes a complete digital controller design procedure for magnetic suspension systems.

  11. Digital control analysis and design of a field-sensed magnetic suspension system.

    PubMed

    Li, Jen-Hsing; Chiou, Juing-Shian

    2015-01-01

    Magnetic suspension systems are mechatronic systems and crucial in several engineering applications, such as the levitation of high-speed trains, frictionless bearings, and wind tunnels. Magnetic suspension systems are nonlinear and unstable systems; therefore, they are suitable educational benchmarks for testing various modeling and control methods. This paper presents the digital modeling and control of magnetic suspension systems. First, the magnetic suspension system is stabilized using a digital proportional-derivative controller. Subsequently, the digital model is identified using recursive algorithms. Finally, a digital mixed linear quadratic regulator (LQR)/H∞ control is adopted to stabilize the magnetic suspension system robustly. Simulation examples and a real-world example are provided to demonstrate the practicality of the study results. In this study, a digital magnetic suspension system model was developed and reviewed. In addition, equivalent state and output feedback controls for magnetic suspension systems were developed. Using this method, the controller design for magnetic suspension systems was simplified, which is the novel contribution of this study. In addition, this paper proposes a complete digital controller design procedure for magnetic suspension systems. PMID:25781508

  12. Thermal Sensor Arrays for The Combinatorial Analysis of Thin Films

    NASA Astrophysics Data System (ADS)

    McCluskey, Patrick James

    2011-12-01

    Membrane-based thermal sensor arrays were developed for the high-throughput analysis of the thermophysical properties of thin films. The continuous growth of integrated circuits and microelectromechanical systems, as well as the development of functional materials and the optimization of materials properties, have produced the need for instruments capable of fast materials screening and analysis at reduced length scales. Two instruments were developed based on a similar architecture, one to measure thermal transport properties and the other to perform calorimetry measurements. Both have the capability to accelerate the pace of materials development and understanding using combinatorial measurement methods. The shared architecture of the instruments consists of a silicon-based micromachined array of thermal sensors. Each sensor consists of a SiN X membrane and a W heating element that also serves as a temperature gauge. The array design allows the simultaneous creation of a library of thin film samples by various deposition techniques while systematically varying a parameter of interest across the device. The membrane-based sensors have little thermal mass making them extremely sensitive to changes in thermal energy. The nano-thermal transport array has an array of sensors optimized for sensitivity to heat loss. The heat loss is determined from the temperature response of the sensor to an applied current. An analytical model is used with a linear regression analysis to fit the thermal properties of the samples to the temperature response. The assumptions of the analytical model are validated with a finite element model. Measured thermal properties include specific heat, thermal effusivity, thermal conductivity, and emissivity. The technique is demonstrated by measuring the thermal transport properties of sputter deposited Cu multilayers with a total film thickness from 15 to 470 nm. The experimental results compare well to a theory based on electronic thermal

  13. Phase velocity approach for Suspension P-S Logging data analysis

    NASA Astrophysics Data System (ADS)

    Lin, Chun-Hung; Lin, Chih-Ping

    2016-06-01

    Due to the short receiver interval, results of Suspension P-S Logging are sensitive to the picking of first arrivals, which is currently carried out by manual picking in the time domain. However, manual picking can be ambiguous and depends heavily on the data quality and analysts' experiences. Furthermore, no information regarding the effective frequency is obtained from first arrival times. A data reduction method based on phase velocity analysis of borehole acoustic waves is proposed herein. The aim is to provide an automatic procedure for more objective velocity analysis. The procedure utilizes the two-channel dispersion curve analysis, but becomes semi-empirical because an additional assumption is made to simplify the calculation and avoid the phase un-wrapping problem associated with the lack of low-frequency information. Some field data were used to evaluate the empirical parameter for calculating the shear wave velocity. Results show that the velocity difference between the proposed method and the conventional method based on manually-picked first arrivals is mostly within 15%. The proposed method can be automated and provide the effective frequency of the obtained shear wave velocity.

  14. Spectral Cytometry Has Unique Properties Allowing Multicolor Analysis of Cell Suspensions Isolated from Solid Tissues

    PubMed Central

    Schmutz, Sandrine; Valente, Mariana

    2016-01-01

    Flow cytometry, initially developed to analyze surface protein expression in hematopoietic cells, has increased in analytical complexity and is now widely used to identify cells from different tissues and organisms. As a consequence, data analysis became increasingly difficult due the need of large multi-parametric compensation matrices and to the eventual auto-fluorescence frequently found in cell suspensions obtained from solid organs. In contrast with conventional flow cytometry that detects the emission peak of fluorochromes, spectral flow cytometry distinguishes the shapes of emission spectra along a large range of continuous wave lengths. The data is analyzed with an algorithm that replaces compensation matrices and treats auto-fluorescence as an independent parameter. Thus, spectral flow cytometry should be capable to discriminate fluorochromes with similar emission peaks and provide multi-parametric analysis without compensation requirements. Here we show that spectral flow cytometry achieves a 21-parametric (19 fluorescent probes) characterization and deals with auto-fluorescent cells, providing high resolution of specifically fluorescence-labeled populations. Our results showed that spectral flow cytometry has advantages in the analysis of cell populations of tissues difficult to characterize in conventional flow cytometry, such as heart and intestine. Spectral flow cytometry thus combines the multi-parametric analytical capacity of the highest performing conventional flow cytometry without the requirement for compensation and enabling auto-fluorescence management. PMID:27500930

  15. Genopal™: A Novel Hollow Fibre Array for Focused Microarray Analysis

    PubMed Central

    Okuzaki, Daisuke; Fukushima, Tatsunobu; Tougan, Takahiro; Ishii, Tomonori; Kobayashi, Shigeto; Yoshizaki, Kazuyuki; Akita, Takashi; Nojima, Hiroshi

    2010-01-01

    Expression profiling of target genes in patient blood is a powerful tool for RNA diagnosis. Here, we describe Genopal™, a novel platform ideal for efficient focused microarray analysis. Genopal™, which consists of gel-filled fibres, is advantageous for high-quality mass production via large-scale slicing of the Genopal™ block. We prepared two arrays, infectant and autoimmunity, that provided highly reliable data in terms of repetitive scanning of the same and/or distinct microarrays. Moreover, we demonstrated that Genopal™ had sensitivity sufficient to yield signals in short hybridization times (0.5 h). Application of the autoimmunity array to blood samples allowed us to identify an expression pattern specific to Takayasu arteritis based on the Spearman rank correlation by comparing the reference profile with those of several autoimmune diseases and healthy volunteers (HVs). The comparison of these data with those obtained by other methods revealed that they exhibited similar expression profiles of many target genes. Taken together, these data demonstrate that Genopal™ is an advantageous platform for focused microarrays with regard to its low cost, rapid results and reliable quality. PMID:21059707

  16. Genopal™: a novel hollow fibre array for focused microarray analysis.

    PubMed

    Okuzaki, Daisuke; Fukushima, Tatsunobu; Tougan, Takahiro; Ishii, Tomonori; Kobayashi, Shigeto; Yoshizaki, Kazuyuki; Akita, Takashi; Nojima, Hiroshi

    2010-12-01

    Expression profiling of target genes in patient blood is a powerful tool for RNA diagnosis. Here, we describe Genopal™, a novel platform ideal for efficient focused microarray analysis. Genopal™, which consists of gel-filled fibres, is advantageous for high-quality mass production via large-scale slicing of the Genopal™ block. We prepared two arrays, infectant and autoimmunity, that provided highly reliable data in terms of repetitive scanning of the same and/or distinct microarrays. Moreover, we demonstrated that Genopal™ had sensitivity sufficient to yield signals in short hybridization times (0.5 h). Application of the autoimmunity array to blood samples allowed us to identify an expression pattern specific to Takayasu arteritis based on the Spearman rank correlation by comparing the reference profile with those of several autoimmune diseases and healthy volunteers (HVs). The comparison of these data with those obtained by other methods revealed that they exhibited similar expression profiles of many target genes. Taken together, these data demonstrate that Genopal™ is an advantageous platform for focused microarrays with regard to its low cost, rapid results and reliable quality. PMID:21059707

  17. Finite element analysis simulations for ultrasonic array NDE inspections

    NASA Astrophysics Data System (ADS)

    Dobson, Jeff; Tweedie, Andrew; Harvey, Gerald; O'Leary, Richard; Mulholland, Anthony; Tant, Katherine; Gachagan, Anthony

    2016-02-01

    Advances in manufacturing techniques and materials have led to an increase in the demand for reliable and robust inspection techniques to maintain safety critical features. The application of modelling methods to develop and evaluate inspections is becoming an essential tool for the NDE community. Current analytical methods are inadequate for simulation of arbitrary components and heterogeneous materials, such as anisotropic welds or composite structures. Finite element analysis software (FEA), such as PZFlex, can provide the ability to simulate the inspection of these arrangements, providing the ability to economically prototype and evaluate improved NDE methods. FEA is often seen as computationally expensive for ultrasound problems however, advances in computing power have made it a more viable tool. This paper aims to illustrate the capability of appropriate FEA to produce accurate simulations of ultrasonic array inspections - minimizing the requirement for expensive test-piece fabrication. Validation is afforded via corroboration of the FE derived and experimentally generated data sets for a test-block comprising 1D and 2D defects. The modelling approach is extended to consider the more troublesome aspects of heterogeneous materials where defect dimensions can be of the same length scale as the grain structure. The model is used to facilitate the implementation of new ultrasonic array inspection methods for such materials. This is exemplified by considering the simulation of ultrasonic NDE in a weld structure in order to assess new approaches to imaging such structures.

  18. SAVANT: Solar Array Verification and Analysis Tool Demonstrated

    NASA Technical Reports Server (NTRS)

    Chock, Ricaurte

    2000-01-01

    The photovoltaics (PV) industry is now being held to strict specifications, such as end-oflife power requirements, that force them to overengineer their products to avoid contractual penalties. Such overengineering has been the only reliable way to meet such specifications. Unfortunately, it also results in a more costly process than is probably necessary. In our conversations with the PV industry, the issue of cost has been raised again and again. Consequently, the Photovoltaics and Space Environment Effects branch at the NASA Glenn Research Center at Lewis Field has been developing a software tool to address this problem. SAVANT, Glenn's tool for solar array verification and analysis is in the technology demonstration phase. Ongoing work has proven that more efficient and less costly PV designs should be possible by using SAVANT to predict the on-orbit life-cycle performance. The ultimate goal of the SAVANT project is to provide a user-friendly computer tool to predict PV on-orbit life-cycle performance. This should greatly simplify the tasks of scaling and designing the PV power component of any given flight or mission. By being able to predict how a particular PV article will perform, designers will be able to balance mission power requirements (both beginning-of-life and end-of-life) with survivability concerns such as power degradation due to radiation and/or contamination. Recent comparisons with actual flight data from the Photovoltaic Array Space Power Plus Diagnostics (PASP Plus) mission validate this approach.

  19. Bioimpedance analysis for the characterization of breast cancer cells in suspension.

    PubMed

    Guofeng Qiao; Wei Wang; Wei Duan; Fan Zheng; Sinclair, A J; Chatwin, C R

    2012-08-01

    The bioimpedance spectroscopy (BIS) technique is potentially a useful tool to differentiate malignancy based on the variation of electrical properties presented by different tissues and cells. The different tissues and cells present variant electrical resistance and reactance when excited at different frequencies. The main purpose of this area of research is to use impedance measurements over a low-frequency bandwidth ranging from 1 kHz to 3 MHz to 1) differentiate the pathological stages of cancer cells under laboratory conditions and 2) permit the extraction of electrical parameters related to cellular information for further analysis. This provides evidence to form the basis of bioimpedance measurement at the cellular level and aids the potential future development of rapid diagnostics from biopsy materials. Three cell lines, representing normal breast epithelia and different pathological stages of breast cancer, have been measured using a standard impedance analyzer driving a four-electrode chamber filled with different cell suspensions. We identify the specific BIS profile for each cell type and determine whether these can be differentiated. In addition, the electrical parameters, e.g., the intracellular conductivity, membrane capacitance/capacity, characteristic frequency, are extracted by the use of equivalent circuit models and physical models to provide details of the cell electric signatures for further analysis of cancer cell pathology. PMID:22692870

  20. Analysis of the static magnetic field-dependent optical transmission of Ni nanorod colloidal suspensions

    NASA Astrophysics Data System (ADS)

    Krämer, Florian; Gratz, Micha; Tschöpe, Andreas

    2016-07-01

    The magnetic field-dependent optical transmission of dilute Ni nanorod aqueous suspensions was investigated. A series of four samples of nanorods were synthesized using the AAO template method and processed to stable colloids. The distributions of their length and diameter were characterized by analysis of TEM images and revealed average diameters of ˜25 nm and different lengths in the range of 60 nm-1100 nm. The collinear magnetic and optical anisotropy was studied by static field-dependent transmission measurements of linearly polarized light parallel and perpendicular to the magnetic field direction. The experimental results were modelled assuming the field-dependent orientation distribution function of a superparamagnetic ensemble for the uniaxial ferromagnetic nanorods in liquid dispersion and extinction cross sections for longitudinal and transversal optical polarization derived from different approaches, including the electrostatic approximation and the separation of variables method, both applied to spheroidal particles, as well as finite element method simulations of spheroids and capped cylindrical particles. The extinction cross sections were compared to reveal the differences associated with the approximations of homogeneous polarization and/or particle shape. The consequences of these approximations for the quantitative analysis of magnetic field-dependent optical transmission measurements were investigated and a reliable protocol derived. Furthermore, the changes in optical cross sections induced by electromagnetic interaction between two nanorods in parallel end-to-end and side-by-side configuration as a function of their separation were studied.

  1. Joint analysis of BICEP2/keck array and Planck Data.

    PubMed

    Ade, P A R; Aghanim, N; Ahmed, Z; Aikin, R W; Alexander, K D; Arnaud, M; Aumont, J; Baccigalupi, C; Banday, A J; Barkats, D; Barreiro, R B; Bartlett, J G; Bartolo, N; Battaner, E; Benabed, K; Benoît, A; Benoit-Lévy, A; Benton, S J; Bernard, J-P; Bersanelli, M; Bielewicz, P; Bischoff, C A; Bock, J J; Bonaldi, A; Bonavera, L; Bond, J R; Borrill, J; Bouchet, F R; Boulanger, F; Brevik, J A; Bucher, M; Buder, I; Bullock, E; Burigana, C; Butler, R C; Buza, V; Calabrese, E; Cardoso, J-F; Catalano, A; Challinor, A; Chary, R-R; Chiang, H C; Christensen, P R; Colombo, L P L; Combet, C; Connors, J; Couchot, F; Coulais, A; Crill, B P; Curto, A; Cuttaia, F; Danese, L; Davies, R D; Davis, R J; de Bernardis, P; de Rosa, A; de Zotti, G; Delabrouille, J; Delouis, J-M; Désert, F-X; Dickinson, C; Diego, J M; Dole, H; Donzelli, S; Doré, O; Douspis, M; Dowell, C D; Duband, L; Ducout, A; Dunkley, J; Dupac, X; Dvorkin, C; Efstathiou, G; Elsner, F; Enßlin, T A; Eriksen, H K; Falgarone, E; Filippini, J P; Finelli, F; Fliescher, S; Forni, O; Frailis, M; Fraisse, A A; Franceschi, E; Frejsel, A; Galeotta, S; Galli, S; Ganga, K; Ghosh, T; Giard, M; Gjerløw, E; Golwala, S R; González-Nuevo, J; Górski, K M; Gratton, S; Gregorio, A; Gruppuso, A; Gudmundsson, J E; Halpern, M; Hansen, F K; Hanson, D; Harrison, D L; Hasselfield, M; Helou, G; Henrot-Versillé, S; Herranz, D; Hildebrandt, S R; Hilton, G C; Hivon, E; Hobson, M; Holmes, W A; Hovest, W; Hristov, V V; Huffenberger, K M; Hui, H; Hurier, G; Irwin, K D; Jaffe, A H; Jaffe, T R; Jewell, J; Jones, W C; Juvela, M; Karakci, A; Karkare, K S; Kaufman, J P; Keating, B G; Kefeli, S; Keihänen, E; Kernasovskiy, S A; Keskitalo, R; Kisner, T S; Kneissl, R; Knoche, J; Knox, L; Kovac, J M; Krachmalnicoff, N; Kunz, M; Kuo, C L; Kurki-Suonio, H; Lagache, G; Lähteenmäki, A; Lamarre, J-M; Lasenby, A; Lattanzi, M; Lawrence, C R; Leitch, E M; Leonardi, R; Levrier, F; Lewis, A; Liguori, M; Lilje, P B; Linden-Vørnle, M; López-Caniego, M; Lubin, P M; Lueker, M; Macías-Pérez, J F; Maffei, B; Maino, D; Mandolesi, N; Mangilli, A; Maris, M; Martin, P G; Martínez-González, E; Masi, S; Mason, P; Matarrese, S; Megerian, K G; Meinhold, P R; Melchiorri, A; Mendes, L; Mennella, A; Migliaccio, M; Mitra, S; Miville-Deschênes, M-A; Moneti, A; Montier, L; Morgante, G; Mortlock, D; Moss, A; Munshi, D; Murphy, J A; Naselsky, P; Nati, F; Natoli, P; Netterfield, C B; Nguyen, H T; Nørgaard-Nielsen, H U; Noviello, F; Novikov, D; Novikov, I; O'Brient, R; Ogburn, R W; Orlando, A; Pagano, L; Pajot, F; Paladini, R; Paoletti, D; Partridge, B; Pasian, F; Patanchon, G; Pearson, T J; Perdereau, O; Perotto, L; Pettorino, V; Piacentini, F; Piat, M; Pietrobon, D; Plaszczynski, S; Pointecouteau, E; Polenta, G; Ponthieu, N; Pratt, G W; Prunet, S; Pryke, C; Puget, J-L; Rachen, J P; Reach, W T; Rebolo, R; Reinecke, M; Remazeilles, M; Renault, C; Renzi, A; Richter, S; Ristorcelli, I; Rocha, G; Rossetti, M; Roudier, G; Rowan-Robinson, M; Rubiño-Martín, J A; Rusholme, B; Sandri, M; Santos, D; Savelainen, M; Savini, G; Schwarz, R; Scott, D; Seiffert, M D; Sheehy, C D; Spencer, L D; Staniszewski, Z K; Stolyarov, V; Sudiwala, R; Sunyaev, R; Sutton, D; Suur-Uski, A-S; Sygnet, J-F; Tauber, J A; Teply, G P; Terenzi, L; Thompson, K L; Toffolatti, L; Tolan, J E; Tomasi, M; Tristram, M; Tucci, M; Turner, A D; Valenziano, L; Valiviita, J; Van Tent, B; Vibert, L; Vielva, P; Vieregg, A G; Villa, F; Wade, L A; Wandelt, B D; Watson, R; Weber, A C; Wehus, I K; White, M; White, S D M; Willmert, J; Wong, C L; Yoon, K W; Yvon, D; Zacchei, A; Zonca, A

    2015-03-13

    We report the results of a joint analysis of data from BICEP2/Keck Array and Planck. BICEP2 and Keck Array have observed the same approximately 400  deg^{2} patch of sky centered on RA 0 h, Dec. -57.5°. The combined maps reach a depth of 57 nK deg in Stokes Q and U in a band centered at 150 GHz. Planck has observed the full sky in polarization at seven frequencies from 30 to 353 GHz, but much less deeply in any given region (1.2  μK deg in Q and U at 143 GHz). We detect 150×353 cross-correlation in B modes at high significance. We fit the single- and cross-frequency power spectra at frequencies ≥150  GHz to a lensed-ΛCDM model that includes dust and a possible contribution from inflationary gravitational waves (as parametrized by the tensor-to-scalar ratio r), using a prior on the frequency spectral behavior of polarized dust emission from previous Planck analysis of other regions of the sky. We find strong evidence for dust and no statistically significant evidence for tensor modes. We probe various model variations and extensions, including adding a synchrotron component in combination with lower frequency data, and find that these make little difference to the r constraint. Finally, we present an alternative analysis which is similar to a map-based cleaning of the dust contribution, and show that this gives similar constraints. The final result is expressed as a likelihood curve for r, and yields an upper limit r_{0.05}<0.12 at 95% confidence. Marginalizing over dust and r, lensing B modes are detected at 7.0σ significance. PMID:25815919

  2. Joint analysis of BICEP2/keck array and Planck Data.

    PubMed

    Ade, P A R; Aghanim, N; Ahmed, Z; Aikin, R W; Alexander, K D; Arnaud, M; Aumont, J; Baccigalupi, C; Banday, A J; Barkats, D; Barreiro, R B; Bartlett, J G; Bartolo, N; Battaner, E; Benabed, K; Benoît, A; Benoit-Lévy, A; Benton, S J; Bernard, J-P; Bersanelli, M; Bielewicz, P; Bischoff, C A; Bock, J J; Bonaldi, A; Bonavera, L; Bond, J R; Borrill, J; Bouchet, F R; Boulanger, F; Brevik, J A; Bucher, M; Buder, I; Bullock, E; Burigana, C; Butler, R C; Buza, V; Calabrese, E; Cardoso, J-F; Catalano, A; Challinor, A; Chary, R-R; Chiang, H C; Christensen, P R; Colombo, L P L; Combet, C; Connors, J; Couchot, F; Coulais, A; Crill, B P; Curto, A; Cuttaia, F; Danese, L; Davies, R D; Davis, R J; de Bernardis, P; de Rosa, A; de Zotti, G; Delabrouille, J; Delouis, J-M; Désert, F-X; Dickinson, C; Diego, J M; Dole, H; Donzelli, S; Doré, O; Douspis, M; Dowell, C D; Duband, L; Ducout, A; Dunkley, J; Dupac, X; Dvorkin, C; Efstathiou, G; Elsner, F; Enßlin, T A; Eriksen, H K; Falgarone, E; Filippini, J P; Finelli, F; Fliescher, S; Forni, O; Frailis, M; Fraisse, A A; Franceschi, E; Frejsel, A; Galeotta, S; Galli, S; Ganga, K; Ghosh, T; Giard, M; Gjerløw, E; Golwala, S R; González-Nuevo, J; Górski, K M; Gratton, S; Gregorio, A; Gruppuso, A; Gudmundsson, J E; Halpern, M; Hansen, F K; Hanson, D; Harrison, D L; Hasselfield, M; Helou, G; Henrot-Versillé, S; Herranz, D; Hildebrandt, S R; Hilton, G C; Hivon, E; Hobson, M; Holmes, W A; Hovest, W; Hristov, V V; Huffenberger, K M; Hui, H; Hurier, G; Irwin, K D; Jaffe, A H; Jaffe, T R; Jewell, J; Jones, W C; Juvela, M; Karakci, A; Karkare, K S; Kaufman, J P; Keating, B G; Kefeli, S; Keihänen, E; Kernasovskiy, S A; Keskitalo, R; Kisner, T S; Kneissl, R; Knoche, J; Knox, L; Kovac, J M; Krachmalnicoff, N; Kunz, M; Kuo, C L; Kurki-Suonio, H; Lagache, G; Lähteenmäki, A; Lamarre, J-M; Lasenby, A; Lattanzi, M; Lawrence, C R; Leitch, E M; Leonardi, R; Levrier, F; Lewis, A; Liguori, M; Lilje, P B; Linden-Vørnle, M; López-Caniego, M; Lubin, P M; Lueker, M; Macías-Pérez, J F; Maffei, B; Maino, D; Mandolesi, N; Mangilli, A; Maris, M; Martin, P G; Martínez-González, E; Masi, S; Mason, P; Matarrese, S; Megerian, K G; Meinhold, P R; Melchiorri, A; Mendes, L; Mennella, A; Migliaccio, M; Mitra, S; Miville-Deschênes, M-A; Moneti, A; Montier, L; Morgante, G; Mortlock, D; Moss, A; Munshi, D; Murphy, J A; Naselsky, P; Nati, F; Natoli, P; Netterfield, C B; Nguyen, H T; Nørgaard-Nielsen, H U; Noviello, F; Novikov, D; Novikov, I; O'Brient, R; Ogburn, R W; Orlando, A; Pagano, L; Pajot, F; Paladini, R; Paoletti, D; Partridge, B; Pasian, F; Patanchon, G; Pearson, T J; Perdereau, O; Perotto, L; Pettorino, V; Piacentini, F; Piat, M; Pietrobon, D; Plaszczynski, S; Pointecouteau, E; Polenta, G; Ponthieu, N; Pratt, G W; Prunet, S; Pryke, C; Puget, J-L; Rachen, J P; Reach, W T; Rebolo, R; Reinecke, M; Remazeilles, M; Renault, C; Renzi, A; Richter, S; Ristorcelli, I; Rocha, G; Rossetti, M; Roudier, G; Rowan-Robinson, M; Rubiño-Martín, J A; Rusholme, B; Sandri, M; Santos, D; Savelainen, M; Savini, G; Schwarz, R; Scott, D; Seiffert, M D; Sheehy, C D; Spencer, L D; Staniszewski, Z K; Stolyarov, V; Sudiwala, R; Sunyaev, R; Sutton, D; Suur-Uski, A-S; Sygnet, J-F; Tauber, J A; Teply, G P; Terenzi, L; Thompson, K L; Toffolatti, L; Tolan, J E; Tomasi, M; Tristram, M; Tucci, M; Turner, A D; Valenziano, L; Valiviita, J; Van Tent, B; Vibert, L; Vielva, P; Vieregg, A G; Villa, F; Wade, L A; Wandelt, B D; Watson, R; Weber, A C; Wehus, I K; White, M; White, S D M; Willmert, J; Wong, C L; Yoon, K W; Yvon, D; Zacchei, A; Zonca, A

    2015-03-13

    We report the results of a joint analysis of data from BICEP2/Keck Array and Planck. BICEP2 and Keck Array have observed the same approximately 400  deg^{2} patch of sky centered on RA 0 h, Dec. -57.5°. The combined maps reach a depth of 57 nK deg in Stokes Q and U in a band centered at 150 GHz. Planck has observed the full sky in polarization at seven frequencies from 30 to 353 GHz, but much less deeply in any given region (1.2  μK deg in Q and U at 143 GHz). We detect 150×353 cross-correlation in B modes at high significance. We fit the single- and cross-frequency power spectra at frequencies ≥150  GHz to a lensed-ΛCDM model that includes dust and a possible contribution from inflationary gravitational waves (as parametrized by the tensor-to-scalar ratio r), using a prior on the frequency spectral behavior of polarized dust emission from previous Planck analysis of other regions of the sky. We find strong evidence for dust and no statistically significant evidence for tensor modes. We probe various model variations and extensions, including adding a synchrotron component in combination with lower frequency data, and find that these make little difference to the r constraint. Finally, we present an alternative analysis which is similar to a map-based cleaning of the dust contribution, and show that this gives similar constraints. The final result is expressed as a likelihood curve for r, and yields an upper limit r_{0.05}<0.12 at 95% confidence. Marginalizing over dust and r, lensing B modes are detected at 7.0σ significance.

  3. Copy Number Variation Analysis by Array Analysis of Single Cells Following Whole Genome Amplification.

    PubMed

    Dimitriadou, Eftychia; Zamani Esteki, Masoud; Vermeesch, Joris Robert

    2015-01-01

    Whole genome amplification is required to ensure the availability of sufficient material for copy number variation analysis of a genome deriving from an individual cell. Here, we describe the protocols we use for copy number variation analysis of non-fixed single cells by array-based approaches following single-cell isolation and whole genome amplification. We are focusing on two alternative protocols, an isothermal and a PCR-based whole genome amplification method, followed by either comparative genome hybridization (aCGH) or SNP array analysis, respectively.

  4. Batch Effects and Pathway Analysis: Two Potential Perils in Cancer Studies Involving DNA Methylation Array Analysis

    PubMed Central

    Harper, Kristin N.; Peters, Brandilyn A.; Gamble, Mary V.

    2013-01-01

    Background DNA methylation microarrays have become an increasingly popular means of studying the role of epigenetics in cancer, though the methods used to analyze these arrays are still being developed and existing methods are not always widely disseminated among microarray users. Methods We investigated two problems likely to confront DNA methylation microarray users: 1) batch effects; and 2) the use of widely available pathway analysis software to analyze results. First, DNA taken from individuals exposed to low and high levels of drinking water arsenic were plated twice on Illumina’s Infinium 450K humanmethylation array, once in order of exposure and again following randomization. Second, we performed simulations in which random CpG sites were drawn from the 450K array and subjected to pathway analysis using Ingenuity’s IPA software. Results The majority of differentially methylated CpG sites identified in Run One were due to batch effects; few sites were also identified in Run Two. In addition, the pathway analysis software reported many significant associations between our data, randomly drawn from the 450K array, and various diseases and biological functions. Conclusions Data from our own laboratory illustrate the pitfalls of not properly controlling for chip-specific batch effects as well as using pathway analysis software created for gene expression arrays to analyze DNA methylation array data. Impact We present evidence that 1) chip-specific effects can simulate plausible differential methylation results; and 2) popular pathway analysis software developed for expression arrays can yield spurious results when used in tandem with methylation microarrays. PMID:23629520

  5. The Murchison Widefield Array 21 cm Power Spectrum Analysis Methodology

    NASA Astrophysics Data System (ADS)

    Jacobs, Daniel C.; Hazelton, B. J.; Trott, C. M.; Dillon, Joshua S.; Pindor, B.; Sullivan, I. S.; Pober, J. C.; Barry, N.; Beardsley, A. P.; Bernardi, G.; Bowman, Judd D.; Briggs, F.; Cappallo, R. J.; Carroll, P.; Corey, B. E.; de Oliveira-Costa, A.; Emrich, D.; Ewall-Wice, A.; Feng, L.; Gaensler, B. M.; Goeke, R.; Greenhill, L. J.; Hewitt, J. N.; Hurley-Walker, N.; Johnston-Hollitt, M.; Kaplan, D. L.; Kasper, J. C.; Kim, HS; Kratzenberg, E.; Lenc, E.; Line, J.; Loeb, A.; Lonsdale, C. J.; Lynch, M. J.; McKinley, B.; McWhirter, S. R.; Mitchell, D. A.; Morales, M. F.; Morgan, E.; Neben, A. R.; Thyagarajan, N.; Oberoi, D.; Offringa, A. R.; Ord, S. M.; Paul, S.; Prabu, T.; Procopio, P.; Riding, J.; Rogers, A. E. E.; Roshi, A.; Udaya Shankar, N.; Sethi, Shiv K.; Srivani, K. S.; Subrahmanyan, R.; Tegmark, M.; Tingay, S. J.; Waterson, M.; Wayth, R. B.; Webster, R. L.; Whitney, A. R.; Williams, A.; Williams, C. L.; Wu, C.; Wyithe, J. S. B.

    2016-07-01

    We present the 21 cm power spectrum analysis approach of the Murchison Widefield Array Epoch of Reionization project. In this paper, we compare the outputs of multiple pipelines for the purpose of validating statistical limits cosmological hydrogen at redshifts between 6 and 12. Multiple independent data calibration and reduction pipelines are used to make power spectrum limits on a fiducial night of data. Comparing the outputs of imaging and power spectrum stages highlights differences in calibration, foreground subtraction, and power spectrum calculation. The power spectra found using these different methods span a space defined by the various tradeoffs between speed, accuracy, and systematic control. Lessons learned from comparing the pipelines range from the algorithmic to the prosaically mundane; all demonstrate the many pitfalls of neglecting reproducibility. We briefly discuss the way these different methods attempt to handle the question of evaluating a significant detection in the presence of foregrounds.

  6. Performance analysis of a semiactive suspension system with particle swarm optimization and fuzzy logic control.

    PubMed

    Qazi, Abroon Jamal; de Silva, Clarence W; Khan, Afzal; Khan, Muhammad Tahir

    2014-01-01

    This paper uses a quarter model of an automobile having passive and semiactive suspension systems to develop a scheme for an optimal suspension controller. Semi-active suspension is preferred over passive and active suspensions with regard to optimum performance within the constraints of weight and operational cost. A fuzzy logic controller is incorporated into the semi-active suspension system. It is able to handle nonlinearities through the use of heuristic rules. Particle swarm optimization (PSO) is applied to determine the optimal gain parameters for the fuzzy logic controller, while maintaining within the normalized ranges of the controller inputs and output. The performance of resulting optimized system is compared with different systems that use various control algorithms, including a conventional passive system, choice options of feedback signals, and damping coefficient limits. Also, the optimized semi-active suspension system is evaluated for its performance in relation to variation in payload. Furthermore, the systems are compared with respect to the attributes of road handling and ride comfort. In all the simulation studies it is found that the optimized fuzzy logic controller surpasses the other types of control.

  7. Performance Analysis of a Semiactive Suspension System with Particle Swarm Optimization and Fuzzy Logic Control

    PubMed Central

    Qazi, Abroon Jamal; de Silva, Clarence W.

    2014-01-01

    This paper uses a quarter model of an automobile having passive and semiactive suspension systems to develop a scheme for an optimal suspension controller. Semi-active suspension is preferred over passive and active suspensions with regard to optimum performance within the constraints of weight and operational cost. A fuzzy logic controller is incorporated into the semi-active suspension system. It is able to handle nonlinearities through the use of heuristic rules. Particle swarm optimization (PSO) is applied to determine the optimal gain parameters for the fuzzy logic controller, while maintaining within the normalized ranges of the controller inputs and output. The performance of resulting optimized system is compared with different systems that use various control algorithms, including a conventional passive system, choice options of feedback signals, and damping coefficient limits. Also, the optimized semi-active suspension system is evaluated for its performance in relation to variation in payload. Furthermore, the systems are compared with respect to the attributes of road handling and ride comfort. In all the simulation studies it is found that the optimized fuzzy logic controller surpasses the other types of control. PMID:24574868

  8. Time response analysis in suspension system design of a high-speed car

    NASA Astrophysics Data System (ADS)

    Pagwiwoko, Cosmas Pandit

    2009-12-01

    A land speed record vehicle is designed to run on a flat surface like salt lake where the wheels are normally made from solid metal with a special suspension system. The suspension is designed to provide a stable platform to keep the wheel treads on tract, to insulate the car and the driver from the surface irregularities and to take part of good handling properties. The surface condition of the lake beds is basically flat without undulations but with inconsistent surface textures and ridges. Spring with nonlinear rate is used with the reason that the resistance builds up roughly proportional to the aerodynamic download for keeping the height more nearly constant. The objective of the work is to produce an efficient method for assisting the design of suspension system. At the initial step, the stiffness and the damping constants are determined based on RMS optimization by following the optimization strategy i.e. to minimize the absolute acceleration respect to the relative displacement of the suspension. Power bond graph technique is then used to model the nonlinearity of the components i.e. spring and dashpot of the suspension system. This technique also enables to incorporate the interactions of dynamic response of the vehicle's body with aerodynamic flow as a result of the base excitation of the ground to the wheels. The simulation is conducted on the platform of Simulink-MATLAB and the interactions amongst the components within the system are observed in time domain to evaluate the effectiveness of the suspension.

  9. Time response analysis in suspension system design of a high-speed car

    NASA Astrophysics Data System (ADS)

    Pagwiwoko, Cosmas Pandit

    2010-03-01

    A land speed record vehicle is designed to run on a flat surface like salt lake where the wheels are normally made from solid metal with a special suspension system. The suspension is designed to provide a stable platform to keep the wheel treads on tract, to insulate the car and the driver from the surface irregularities and to take part of good handling properties. The surface condition of the lake beds is basically flat without undulations but with inconsistent surface textures and ridges. Spring with nonlinear rate is used with the reason that the resistance builds up roughly proportional to the aerodynamic download for keeping the height more nearly constant. The objective of the work is to produce an efficient method for assisting the design of suspension system. At the initial step, the stiffness and the damping constants are determined based on RMS optimization by following the optimization strategy i.e. to minimize the absolute acceleration respect to the relative displacement of the suspension. Power bond graph technique is then used to model the nonlinearity of the components i.e. spring and dashpot of the suspension system. This technique also enables to incorporate the interactions of dynamic response of the vehicle's body with aerodynamic flow as a result of the base excitation of the ground to the wheels. The simulation is conducted on the platform of Simulink-MATLAB and the interactions amongst the components within the system are observed in time domain to evaluate the effectiveness of the suspension.

  10. GEO Satellite Solar Array Abnormality's Analysis and Treatment

    NASA Astrophysics Data System (ADS)

    Wang, Junyan; Yang, Yujie; Zhu, Weibo; Liu, Jingyong; Xu, Hui

    Solar array, converting sunlight into electricity, is one of the most important components in satellite energy subsystem. It is significant for in-orbit satellite safety that solar array and its subsidiaries work normally. An abnormal phenomenon that the output current of one solar array suddenly decreased happened in a GEO satellite. Combined with the structure of the solar array system and the trends of relevant parameters during the abnormality, the paper analyzed the possible reasons, and detected the root cause, and finally provided an emergency treatment for this kind of abnormality.

  11. Assessment of formulation robustness for nano-crystalline suspensions using failure mode analysis or derisking approach.

    PubMed

    Nakach, Mostafa; Authelin, Jean-René; Voignier, Cecile; Tadros, Tharwat; Galet, Laurence; Chamayou, Alain

    2016-06-15

    The small particle size of nano-crystalline suspensions can be responsible for their physical instability during drug product preparation (downstream processing), storage and administration. For that purpose, the commercial formulation needs to be sufficiently robust to various triggering conditions, such as ionic strength, shear rate, wetting/dispersing agent desorption by dilution, temperature and pH variation. In our previous work we described a systematic approach to select the suitable wetting/dispersant agent for the stabilization of nano-crystalline suspension. In this paper, we described the assessment of the formulation robustness (stabilized using a mixture of sodium dodecyl sulfate (SDS) and polyvinylpyrrolidone (PVP) and) by measuring the rate of perikinetic (diffusion-controlled) and orthokinetic (shear-induced) aggregation as a function of ionic strength, temperature, pH and dilution. The results showed that, using the SDS/PVP system, the critical coagulation concentration is about five times higher than that observed in the literature for suspension colloidaly stable at high concentration. The nano-suspension was also found to be very stable at ambient temperature and at different pH conditions. Desorption test confirmed the high affinity between API and wetting/dispersing agent. However, the suspension undergoes aggregation at high temperature due to the desorption of the wetting/dispersing agent and disaggregation of SDS micelles. Furthermore, aggregation occurs at very high shear rate (orhokinetic aggregation) by overcoming the energy barrier responsible for colloidal stability of the system. PMID:27102992

  12. Simulation analysis of the EUSAMA Plus suspension testing method including the impact of the vehicle untested side

    NASA Astrophysics Data System (ADS)

    Dobaj, K.

    2016-09-01

    The work deals with the simulation analysis of the half car vehicle model parameters on the suspension testing results. The Matlab simulation software was used. The considered model parameters are involved with the shock absorber damping coefficient, the tire radial stiffness, the car width and the rocker arm length. The consistent vibrations of both test plates were considered. Both wheels of the car were subjected to identical vibration, with frequency changed similar to the EUSAMA Plus principle. The shock absorber damping coefficient (for several values of the car width and rocker arm length) was changed on one and both sides of the vehicle. The obtained results are essential for the new suspension testing algorithm (basing on the EUSAMA Plus principle), which will be the aim of the further author's work.

  13. Terrestrial central station array life-cycle analysis support study

    NASA Technical Reports Server (NTRS)

    1978-01-01

    Plant elements evaluated included designs for module, panel and array structures, as well as balance-of-plant systems. Installation and maintenance procedures and the impact of site environment were also evaluated. In terms of the cost of energy produced, the horizontal array configuration was found to be less expensive than the tandem array at latitudes less than 40 deg. Both of these configurations are less expensive than the rack design. However, the costs of energy for all three configurations are within approximately ?10 percent of each other. For flat plate panels, the seasonally adjusted and tracking array configurations are not economically attractive when compared to the three other designs. Balance-of-plant costs are approximately equal to (goal) module costs. The array structures and foundations are the most expensive items in the balance-of-plant costs.

  14. Analysis of three-component ambient vibration array measurements

    NASA Astrophysics Data System (ADS)

    Fäh, Donat; Stamm, Gabriela; Havenith, Hans-Balder

    2008-01-01

    Both synthetic and observed ambient vibration array data are analysed using high-resolution beam-forming. In addition to a classical analysis of the vertical component, this paper presents results derived from processing horizontal components. We analyse phase velocities of fundamental and higher mode Rayleigh and Love waves, and particle motions (ellipticity) retrieved from H/V spectral ratios. A combined inversion with a genetic algorithm and a strategy for selecting possible model parameters allow us to define structural models explaining the data. The results from synthetic data for simple models with one or two layers of sediments suggest that, in most cases, the number of layers has to be reduced to a few sediment strata to find the original structure. Generally, reducing the number of soft-sediment layers in the inversion process with genetic algorithms leads to a class of models that are less smooth. They have a stronger impedance contrast between sediments and bedrock. Combining Love and Rayleigh wave dispersion curves with the ellipticity of the fundamental mode Rayleigh waves has some advantages. Scatter is reduced when compared to using structural models obtained only from Rayleigh wave phase velocity curves. By adding information from Love waves some structures can be excluded. Another possibility for constraining inversion results is to include supplementary geological or borehole information. Analysing radial components also can provide segments of Rayleigh wave dispersion curves for modes not seen on the vertical component. Finally, using ellipticity information allows us to confine the total depth of the soft sediments. For real sites, considerable variability in the measured phase velocity curves is observed. This comes from lateral changes in the structure or seismic sources within the array. Constraining the inversion by combining Love and Rayleigh wave information can help reduce such problems. Frequency bands in which the Rayleigh wave

  15. Geometric nonlinear analysis of self-anchored cable-stayed suspension bridges.

    PubMed

    Hui-Li, Wang; Yan-Bin, Tan; Si-Feng, Qin; Zhe, Zhang

    2013-01-01

    Geometric nonlinearity of self-anchored cable-stayed suspension bridges is studied in this paper. The repercussion of shrinkage and creep of concrete, rise-to-span ratio, and girder camber on the system is discussed. A self-anchored cable-stayed suspension bridge with a main span of 800 m is analyzed with linear theory, second-order theory, and nonlinear theory, respectively. In the condition of various rise-to-span ratios and girder cambers, the moments and displacements of both the girder and the pylon under live load are acquired. Based on the results it is derived that the second-order theory can be adopted to analyze a self-anchored cable-stayed suspension bridge with a main span of 800 m, and the error is less than 6%. The shrinkage and creep of concrete impose a conspicuous impact on the structure. And it outmatches suspension bridges for system stiffness. As the rise-to-span ratio increases, the axial forces of the main cable and the girder decline. The system stiffness rises with the girder camber being employed. PMID:24282388

  16. Water desorption of cassava starch granules: A study based on thermogravimetric analysis of aqueous suspensions and humid powders.

    PubMed

    Ayala Valencia, Germán; Djabourov, Madeleine; do Amaral Sobral, Paulo José

    2016-08-20

    This work reports on water desorption from cassava starch in relation with the structure and conditioning of granules in suspensions or after equilibration in desiccators. The experimental work is performed by thermogravimetric analysis with isothermal and non-isothermal protocols and interpreted to derive the activation energies and desorption frequencies according to the humidity range with no adjustable parameter. The analysis points out the different types of water interacting with the starch granules and relates the drying coefficients to their microscopic structure. The work helps clarifying contradictory and partial results from the literature.

  17. Water desorption of cassava starch granules: A study based on thermogravimetric analysis of aqueous suspensions and humid powders.

    PubMed

    Ayala Valencia, Germán; Djabourov, Madeleine; do Amaral Sobral, Paulo José

    2016-08-20

    This work reports on water desorption from cassava starch in relation with the structure and conditioning of granules in suspensions or after equilibration in desiccators. The experimental work is performed by thermogravimetric analysis with isothermal and non-isothermal protocols and interpreted to derive the activation energies and desorption frequencies according to the humidity range with no adjustable parameter. The analysis points out the different types of water interacting with the starch granules and relates the drying coefficients to their microscopic structure. The work helps clarifying contradictory and partial results from the literature. PMID:27178961

  18. Faster Array Training and Rapid Analysis for a Sensor Array Intended for an Event Monitor in Air

    NASA Technical Reports Server (NTRS)

    Homer, Margie L.; Shevade, A. V.; Fonollosa, J.; Huerta, R.

    2013-01-01

    Environmental monitoring, in particular, air monitoring, is a critical need for human space flight. Both monitoring and life support systems have needs for closed loop process feedback and quality control for environmental factors. Monitoring protects the air environment and water supply for the astronaut crew and different sensors help ensure that the habitat falls within acceptable limits, and that the life support system is functioning properly and efficiently. The longer the flight duration and the farther the destination, the more critical it becomes to have carefully monitored and automated control systems for life support. There is an acknowledged need for an event monitor which samples the air continuously and provides near real-time information on changes in the air. Past experiments with the JPL ENose have demonstrated a lifetime of the sensor array, with the software, of around 18 months. We are working on a sensor array and new algorithms that will incorporate transient sensor responses in the analysis. Preliminary work has already showed more rapid quantification and identification of analytes and the potential for faster training time of the array. We will look at some of the factors that contribute to demonstrating faster training time for the array. Faster training will decrease the integrated sensor exposure to training analytes, which will also help extend sensor lifetime.

  19. Evaluation of P- and S- Wave Velocities at CGS Geotechnical Arrays Using Wave Propagation Analysis of Strong Ground-Motion Records

    NASA Astrophysics Data System (ADS)

    Haddadi, H. R.; Shakal, A. F.; Hagos, L. Z.

    2014-12-01

    The average compressional and shear wave velocities of ground layers at the California Geological Survey's instrumented geotechnical arrays are evaluated by analyzing the strong ground-motion records of the earthquakes. The Normalized Input-Output Minimization Method (NIOM) has been employed to correlate the ground motion waveforms recorded at various depths of the geotechnical arrays, and to calculate the P- and S- wave travel times and velocities between the depths at which the seismic sensors have been installed. As of August 2014, the California Geological Survey's Strong-Motion Instrumentation Program (CGS CSMIP) operates 35 geotechnical arrays, a large number of them with cooperation of the California Department of Transportation (Caltrans). As of this date, 140 records from 68 earthquakes with magnitude 3.5 and larger have been recorded at 28 geotechnical arrays. The records are available for download through the Center for Engineering Strong Motion Data (CESMD), the joint center of the U.S. Geological Survey and the California Geological Survey. The velocities obtained in this study for the cases of weak and strong shaking are compared with the measured velocities at the geotechnical array sites obtained using geophysical methods such as SASW, PS suspension logging and downhole methods. The average shear wave velocities in the upper 30 m of the geotechnical arrays from this study are compared with the Vs30 values from geophysical investigations. Application of wave propagation analysis is especially important in studying the dynamic characteristics of ground layers during high stress ground shaking and yields average values for a larger area under a site as opposed to the area in the very close vicinity of the geotechnical array.

  20. Magnetotelluric array data analysis from north-west Fennoscandia

    NASA Astrophysics Data System (ADS)

    Cherevatova, M.; Smirnov, M. Yu.; Jones, A. G.; Pedersen, L. B.; Becken, M.; Biolik, M.; Cherevatova, M.; Ebbing, J.; Gradmann, S.; Gurk, M.; Hübert, J.; Jones, A. G.; Junge, A.; Kamm, J.; Korja, T.; Lahti, I.; Löwer, A.; Nittinger, C.; Pedersen, L. B.; Savvaidis, A.; Smirnov, M.

    2015-06-01

    New magnetotelluric (MT) data in north-west Fennoscandia were acquired within the framework of the project "Magnetotellurics in the Scandes" (MaSca). The project focuses on the investigation of the crustal and upper mantle lithospheric structure in the transition zone from stable Precambrian cratonic interior to passive continental margin beneath the Caledonian orogen and the Scandinavian Mountains in western Fennoscandia. An array of 59 synchronous long period and 220 broad-band MT sites was occupied in the summers of 2011 to 2013. We estimated MT transfer functions in the period range from 0.003 to 105 s. The Q-function multi-site multi-frequency analysis and the phase tensor were used to estimate strike and dimensionality of MT data. Dimensionality and strike analyses indicate generally 2-D behaviour of the data with 3-D effects at some sites and period bands. In this paper we present 2-D inversion of the data, 3-D inversion models are shown in the parallel paper. We choose to invert the determinant of the impedance tensor to mitigate 3-D effects in the data on our 2-D models. Seven crustal-scale and four lithospheric-scale 2-D models are presented. The resistive regions are images of the Archaean and Proterozoic basement in the east and thin Caledonian nappes in the west. The middle and lower crust of the Svecofennian province is conductive. The southern end of the Kittilä Greenstone Belt is seen in the models as a strong upper to middle crustal conductor. In the Caledonides, the highly conductive alum shales are observed along the Caledonian Thrust Front. The thickest lithosphere is in the Palaeoproterozioc Svecofennian Domain, not in the Archaean. The thickness of the lithosphere is around 200 km in the north and 300 km in the south-west.

  1. Random vibrations of quadratic damping systems. [optimum damping analysis for automobile suspension system

    NASA Technical Reports Server (NTRS)

    Sireteanu, T.

    1974-01-01

    An oscillating system with quadratic damping subjected to white noise excitation is replaced by a nonlinear, statistically equivalent system for which the associated Fokker-Planck equation can be exactly solved. The mean square responses are calculated and the optimum damping coefficient is determined with respect to the minimum mean square acceleration criteria. An application of these results to the optimization of automobile suspension damping is given.

  2. High-throughput cell analysis using multiplexed array technologies.

    PubMed

    Beske, Oren E; Goldbard, Simon

    2002-09-15

    The desire for more biologically relevant data from primary screening has resulted in a dramatic increase of cell-based assays in HTS labs. Consequently, new cell-array technologies are being developed to increase the quality and quantity of data emerging from such screens. These technologies take the form of both positional and non-positional formats, each with their own advantages. Notably, screens using these technologies generate databases of high-quality data that can be analyzed in ways currently not possible. The power of cell-based assays combined with new array and analytical technologies will enable the condensation of serial drug discovery processes, thereby decreasing the time and cost of taking a hit compound into clinical trials. Here, we compare array strategies being developed towards the goal of integrating multiplexed cell-based assays into HTS. PMID:12546879

  3. Adaptive Injection-locking Oscillator Array for RF Spectrum Analysis

    SciTech Connect

    Leung, Daniel

    2011-04-19

    A highly parallel radio frequency receiver using an array of injection-locking oscillators for on-chip, rapid estimation of signal amplitudes and frequencies is considered. The oscillators are tuned to different natural frequencies, and variable gain amplifiers are used to provide negative feedback to adapt the locking band-width with the input signal to yield a combined measure of input signal amplitude and frequency detuning. To further this effort, an array of 16 two-stage differential ring oscillators and 16 Gilbert-cell mixers is designed for 40-400 MHz operation. The injection-locking oscillator array is assembled on a custom printed-circuit board. Control and calibration is achieved by on-board microcontroller.

  4. Numerical Analysis of Multicomponent Suspension Droplets in High-Velocity Flame Spray Process

    NASA Astrophysics Data System (ADS)

    Gozali, Ebrahim; Mahrukh, Mahrukh; Gu, Sai; Kamnis, Spyros

    2014-08-01

    The liquid feedstock or suspension as a different mixture of liquid fuel ethanol and water is numerically studied in high-velocity suspension flame spray (HVSFS) process, and the results are compared for homogenous liquid feedstock of ethanol and water. The effects of mixture on droplet aerodynamic breakup, evaporation, combustion, and gas dynamics of HVSFS process are thoroughly investigated. The exact location where the particle heating is initiated (above the carrier liquid boiling point) can be controlled by increasing the water content in the mixture. In this way, the particle inflight time in the high-temperature gas regions can be adjusted avoiding adverse effects from surface chemical transformations. The mixture is modeled as a multicomponent droplet, and a convection/diffusion model, which takes into account the convective flow of evaporating material from droplet surface, is used to simulate the suspension evaporation. The model consists of several sub-models that include premixed combustion of propane-oxygen, non-premixed ethanol-oxygen combustion, modeling of multicomponent droplet breakup and evaporation, as well as heat and mass transfer between liquid droplets and gas phase.

  5. Design and analysis of a shock absorber with variable moment of inertia for passive vehicle suspensions

    NASA Astrophysics Data System (ADS)

    Xu, Tongyi; Liang, Ming; Li, Chuan; Yang, Shuai

    2015-10-01

    A two-terminal mass (TTM) based vibration absorber with variable moment of inertia (VMI) for passive vehicle suspension is proposed. The VMI of the system is achieved by the motion of sliders embedded in a hydraulic driven flywheel. The moment of inertia increases in reaction to strong vertical vehicle oscillations and decreases for weak vertical oscillations. The hydraulic mechanism of the system converts the relative linear motion between the two terminals of the suspension into rotating motion of the flywheel. In the case of stronger vehicle vertical oscillation, the sliders inside the flywheel move away from the center of the flywheel because of the centrifugal force, hence yielding higher moment of inertia. The opposite is true in the case of weaker vehicle oscillation. As such, the moment of inertia adjusts itself adaptively in response to the road conditions. The performance of the proposed TTM-VMI absorber has been analyzed via dynamics modeling and simulation and further examined by experiments. In comparison to its counterpart with constant moment of inertia, the proposed VMI system offers faster response, better road handling and safety, improved ride comfort, and reduced suspension deflection except in the case of sinusoidal excitations.

  6. Depletion stabilization in nanoparticle-polymer suspensions: multi-length-scale analysis of microstructure.

    PubMed

    Kim, Sunhyung; Hyun, Kyu; Moon, Joo Yong; Clasen, Christian; Ahn, Kyung Hyun

    2015-02-17

    We study the mechanism of depletion stabilization and the resultant microstructure of aqueous suspensions of nanosized silica and poly(vinyl alcohol) (PVA). Rheology, small-angle light scattering (SALS), and small-angle X-ray scattering (SAXS) techniques enable us to analyze the microstructure at broad length scale from single particle size to the size of a cluster of aggregated particles. As PVA concentration increases, the microstructure evolves from bridging flocculation, steric stabilization, depletion flocculation to depletion stabilization. To our surprise, when depletion stabilization occurs, the suspension shows the stabilization at the cluster length scale, while maintaining fractal aggregates at the particle length scale. This sharply contrasts previously reported studies on the depletion stabilization of microsized particle and polymer suspensions, which exhibits the stabilization at the particle length scale. On the basis of the evaluation of depletion interaction, we propose that the depletion energy barrier exists between clusters rather than particles due to the comparable size of silica particle and the radius gyration of PVA.

  7. Analysis of backwashing efficiency in dead-end hollow-fibre ultrafiltration of anaerobic suspensions.

    PubMed

    Vera, Luisa; González, Enrique; Ruigómez, Ignacio; Gómez, Jenniffer; Delgado, Sebastián

    2015-11-01

    A novel dead-end mode operation for filtering anaerobic suspensions was investigated. In this mode, the filtration system automatically adjusted backwashing frequency to a preselected transmembrane pressure set-point. This paper discusses the effectiveness of the backwashing conditions on membrane fouling. Anaerobic suspensions from a conventional wastewater treatment plant digester were used as model suspensions for the trials carried out at lab-scale. Gas sparging aided backwashing significantly enhanced membrane cleaning efficiency. No effect of gas sparging on internal fouling was detected. Also, the cleaning efficiency linearly decreased with permeate flux. Nevertheless, due to a high increase in the reversible fouling, a reasonable net permeate flux (7.2-6.8 L/h m(2)) can be achieved when intermediate fluxes (12-16 L/h m(2)) were imposed and the higher transmembrane pressure set-point value (50 kPa) was applied. Both backwashing duration and flux exhibited similar influence on cake fouling removal for a given volume of permeate produced.

  8. Array2BIO: A Comprehensive Suite of Utilities for the Analysis of Microarray Data

    SciTech Connect

    Loots, G G; Chain, P G; Mabery, S; Rasley, A; Garcia, E; Ovcharenko, I

    2006-02-13

    We have developed an integrative and automated toolkit for the analysis of Affymetrix microarray data, named Array2BIO. It identifies groups of coexpressed genes using two complementary approaches--comparative analysis of signal versus control microarrays and clustering analysis of gene expression across different conditions. The identified genes are assigned to functional categories based on the Gene Ontology classification, and a detection of corresponding KEGG protein interaction pathways. Array2BIO reliably handles low-expressor genes and provides a set of statistical methods to quantify the odds of observations, including the Benjamini-Hochberg and Bonferroni multiple testing corrections. Automated interface with the ECR Browser provides evolutionary conservation analysis of identified gene loci while the interconnection with Creme allows high-throughput analysis of human promoter regions and prediction of gene regulatory elements that underlie the observed expression patterns. Array2BIO is publicly available at http://array2bio.dcode.org.

  9. Recent Developments in the Analysis of Couple Oscillator Arrays

    NASA Technical Reports Server (NTRS)

    Pogorzelski, Ronald J.

    2000-01-01

    This presentation considers linear arrays of coupled oscillators. Our purpose in coupling oscillators together is to achieve high radiated power through the spatial power combining which results when the oscillators are injection locked to each other. York, et. al. have shown that, left to themselves, the ensemble of injection locked oscillators oscillate at the average of the tuning frequencies of all the oscillators. Coupling these arrays achieves high radiated power through coherent spatial power combining. The coupled oscillators are usually designed to produce constant aperture phase. Oscillators are injection locked to each other or to a master oscillator to produce coherent radiation. Oscillators do not necessarily oscillate at their tuning frequency.

  10. CRSP Hyperspectral Stripe Array Targets: Preliminary Results and Analysis

    NASA Technical Reports Server (NTRS)

    Terrie, Gregory; Jenner, Jeff; Tate, Steve; Muston, Shaun; Schaefer, Jason; Grant, Brennan; Sellers, Richard

    2000-01-01

    Objectives of this program: Assess the capability of a spaceborne hyperspectral sensor/algorithm system to perform target detection; Provide information to guide the design and construction of surrogate targets and stripe arrays; Target development cost of less than 50,000.

  11. Data Quality Analysis for the Bighorn Arch Seismic Array Experiment

    NASA Astrophysics Data System (ADS)

    Mancinelli, N. J.; Yang, Z.; Yeck, W. L.; Sheehan, A. F.

    2010-12-01

    We analyze background noise to assess the difference in station noise levels of different types of seismic sensors and the effects of deployed site locations, and to identify local noise sources, using the data from the Bighorn Arch Seismic Experiment (BASE). Project BASE is an EarthScope Flexible Array (FA) project and includes the deployment of 38 broadband seismometers (Guralp CMG3T), 173 short-period seismometers (L22 and CMG40T-1s), and 1850 high-frequency geophones with Reftek RT125 “Texans” in northern Wyoming, providing continuous dataset of various seismic sensor types and site locations in different geologic setups (basins and mountains). We carry out our analysis through a recently developed approach of using probability density function (PDF) to display the distribution of seismic power spectral density (PSD) [McNamara and Buland, 2004]. This new approach bypasses the tedious pre-screening for transient signals (earthquakes, mass recentering, calibration pulses, etc.) which is required by the traditional PSD analysis. Using the program PQLX, we were able to correlate specific noise sources—mine blasts, teleseisms, passing cars, etc—with features seen on PDF plots. We analyzed eight months of continuous BASE project broadband and short period data for this study. The power spectral density plots suggest that, of the 3 different instrument types used in the BASE project, the broadband CMG3T stations have the lowest background noise in the period range of 0.1-1 s while the short-period L22 stations have the highest background noise. As expected, stations located in the Bighorn Mountain Range are closer to the Low Noise Model [Peterson, 1993] than those located in the adjacent Bighorn Basin and Powder River Basin, particularly in the 0.1-1 s period range. This is mainly attributed to proximity to bedrock, though increased distance from cultural noise also contributes. At longer periods (1-100 s), the noise level of broadband instruments is lower

  12. BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data

    PubMed Central

    Saal, Lao H; Troein, Carl; Vallon-Christersson, Johan; Gruvberger, Sofia; Borg, Åke; Peterson, Carsten

    2002-01-01

    The microarray technique requires the organization and analysis of vast amounts of data. These data include information about the samples hybridized, the hybridization images and their extracted data matrices, and information about the physical array, the features and reporter molecules. We present a web-based customizable bioinformatics solution called BioArray Software Environment (BASE) for the management and analysis of all areas of microarray experimentation. All software necessary to run a local server is freely available. PMID:12186655

  13. Biomedical analysis of rat body hair after hindlimb suspension for 14 days

    NASA Astrophysics Data System (ADS)

    Terada, Masahiro; Kawano, Fuminori; Ishioka, Noriaki; Higashibata, Akira; Majima, Hideyuki J.; Yamazaki, Takashi; Watanabe-Asaka, Tomomi; Niihori, Maki; Nakao, Reiko; Yamada, Shin; Mukai, Chiaki; Ohira, Yoshinobu

    2012-04-01

    The levels of 26 minerals in rat body hair were analyzed in control and hindlimb-suspended Wistar Hannover rats (n=5 each). We quantified the levels of 22 minerals in this experiment. However, we were unable to measure the levels of 4 minerals (Be, V, Cd, and Hg) quantitatively because they were below the limit of detection. Of the 22 quantified, the levels of 19 minerals were not significantly different between control and hindlimb-suspended groups. The levels of 3 minerals (Pb, Cr, and Al) tended to be higher in the hindlimb-suspended group than in the control group; however, this difference was not significant. The concentrations of 3 other minerals (I, K, and Mg) were significantly different between the 2 groups. The iodine (I) level was 58.2% higher in the hindlimb-suspended group than in the control group (P<0.05). Potassium (K) and magnesium (Mg) levels were 55.2% and 20.4% lower, respectively, in the experimental group (P<0.05 in both cases). These results indicate that a physiological change in mineral metabolism resulting from physical or mental stress, such as hindlimb suspension, is reflected in body hair. The Japan Aerospace Exploration Agency (JAXA) has initiated a human research study to investigate the effects of long-term space flight on gene expression and mineral metabolism by analyzing hair samples of astronauts who stayed in the International Space Station (ISS) for 6 months. We believe that hindlimb suspension for 14 days can simulate the effects of an extremely severe environment, such as space flight, because the hindlimb suspension model elicits a rapid physiological change in skeletal muscle, bone, and fluid shift even in the short term. These results also suggest that we can detect various effects on the body by analyzing the human scalp hair shaft.

  14. [Particle Size and Number Density Online Analysis for Particle Suspension with Polarization-Differentiation Elastic Light Scattering Spectroscopy].

    PubMed

    Chen, Wei-kang; Fang, Hui

    2016-03-01

    The basic principle of polarization-differentiation elastic light scattering spectroscopy based techniques is that under the linear polarized light incidence, the singlely scattered light from the superficial biological tissue and diffusively scattered light from the deep tissue can be separated according to the difference of polarization characteristics. The novel point of the paper is to apply this method to the detection of particle suspension and, to realize the simultaneous measurement of its particle size and number density in its natural status. We design and build a coaxial cage optical system, and measure the backscatter signal at a specified angle from a polystyrene microsphere suspension. By controlling the polarization direction of incident light with a linear polarizer and adjusting the polarization direction of collected light with another linear polarizer, we obtain the parallel polarized elastic light scattering spectrum and cross polarized elastic light scattering spectrum. The difference between the two is the differential polarized elastic light scattering spectrum which include only the single scattering information of the particles. We thus compare this spectrum to the Mie scattering calculation and extract the particle size. We then also analyze the cross polarized elastic light scattering spectrum by applying the particle size already extracted. The analysis is based on the approximate expressions taking account of light diffusing, from which we are able to obtain the number density of the particle suspension. We compare our experimental outcomes with the manufacturer-provided values and further analyze the influence of the particle diameter standard deviation on the number density extraction, by which we finally verify the experimental method. The potential applications of the method include the on-line particle quality monitoring for particle manufacture as well as the fat and protein density detection of milk products.

  15. [Particle Size and Number Density Online Analysis for Particle Suspension with Polarization-Differentiation Elastic Light Scattering Spectroscopy].

    PubMed

    Chen, Wei-kang; Fang, Hui

    2016-03-01

    The basic principle of polarization-differentiation elastic light scattering spectroscopy based techniques is that under the linear polarized light incidence, the singlely scattered light from the superficial biological tissue and diffusively scattered light from the deep tissue can be separated according to the difference of polarization characteristics. The novel point of the paper is to apply this method to the detection of particle suspension and, to realize the simultaneous measurement of its particle size and number density in its natural status. We design and build a coaxial cage optical system, and measure the backscatter signal at a specified angle from a polystyrene microsphere suspension. By controlling the polarization direction of incident light with a linear polarizer and adjusting the polarization direction of collected light with another linear polarizer, we obtain the parallel polarized elastic light scattering spectrum and cross polarized elastic light scattering spectrum. The difference between the two is the differential polarized elastic light scattering spectrum which include only the single scattering information of the particles. We thus compare this spectrum to the Mie scattering calculation and extract the particle size. We then also analyze the cross polarized elastic light scattering spectrum by applying the particle size already extracted. The analysis is based on the approximate expressions taking account of light diffusing, from which we are able to obtain the number density of the particle suspension. We compare our experimental outcomes with the manufacturer-provided values and further analyze the influence of the particle diameter standard deviation on the number density extraction, by which we finally verify the experimental method. The potential applications of the method include the on-line particle quality monitoring for particle manufacture as well as the fat and protein density detection of milk products. PMID:27400522

  16. Kinematic and dynamic analysis of a heavy truck with individual front suspension

    NASA Astrophysics Data System (ADS)

    Yarmohamadi, Hoda; Berbyuk, Viktor

    2013-06-01

    The main focus of this work is on the characteristics of a commercial vehicle with individual front suspension (IFS). Both kinematic and dynamic properties of the vehicle are investigated through simulations and analytical expressions. Moreover, employing the model of the tractor semitrailer combination, the study presents the results of comparison between the trucks with IFS and rigid front axle with respect to comfort and handling. This is done by analysing the responses of the vehicles to different road and steering inputs. The obtained results show enhanced comfort and steering feeling for the truck with IFS.

  17. Nonlinear analysis and performance evaluation of the Annular Suspension and Pointing System (ASPS)

    NASA Technical Reports Server (NTRS)

    Joshi, S. M.

    1978-01-01

    The Annular Suspension and Pointing System (ASPS) can provide high accurate fine pointing for a variety of solar-, stellar-, and Earth-viewing scientific instruments during space shuttle orbital missions. In this report, a detailed nonlinear mathematical model is developed for the ASPS/Space Shuttle system. The equations are augmented with nonlinear models of components such as magnetic actuators and gimbal torquers. Control systems and payload attitude state estimators are designed in order to obtain satisfactory pointing performance, and statistical pointing performance is predicted in the presence of measurement noise and disturbances.

  18. Analysis and development of dynamic selection of laser array elements

    NASA Technical Reports Server (NTRS)

    Williams, M. D.

    1992-01-01

    The transmission of large amounts of power in space by laser beam (diode lasers, in particular) requires an array of lasers to increase total power. Concentration of the beam requires some degree of coherence. Temporal coherence can be obtained by locking amplifiers to a master oscillator. However, spatial coherence is not so easily created or maintained. Many mechanical, thermal, and electrical factors oppose it continually. A very simple method is described for creating and maintaining a degree of spatial coherence by simply turning selected diodes ON or OFF. The degree of coherence can be chosen; the greater the coherence, the larger is the number of lasers required for a given power and the longer the lifetime of the array. An experiment for analyzing performance, verifying theory, and evaluating critical parameters is also proposed.

  19. In situ structural analysis of Golgi intracisternal protein arrays

    PubMed Central

    Engel, Benjamin D.; Schaffer, Miroslava; Albert, Sahradha; Asano, Shoh; Plitzko, Jürgen M.; Baumeister, Wolfgang

    2015-01-01

    We acquired molecular-resolution structures of the Golgi within its native cellular environment. Vitreous Chlamydomonas cells were thinned by cryo-focused ion beam milling and then visualized by cryo-electron tomography. These tomograms revealed structures within the Golgi cisternae that have not been seen before. Narrow trans-Golgi lumina were spanned by asymmetric membrane-associated protein arrays that had ∼6-nm lateral periodicity. Subtomogram averaging showed that the arrays may determine the narrow central spacing of the trans-Golgi cisternae through zipper-like interactions, thereby forcing cargo to the trans-Golgi periphery. Additionally, we observed dense granular aggregates within cisternae and intracisternal filament bundles associated with trans-Golgi buds. These native in situ structures provide new molecular insights into Golgi architecture and function. PMID:26311849

  20. Three-dimensional analysis of magnetometer array data

    NASA Technical Reports Server (NTRS)

    Richmond, A. D.; Baumjohann, W.

    1984-01-01

    A technique is developed for mapping magnetic variation fields in three dimensions using data from an array of magnetometers, based on the theory of optimal linear estimation. The technique is applied to data from the Scandinavian Magnetometer Array. Estimates of the spatial power spectra for the internal and external magnetic variations are derived, which in turn provide estimates of the spatial autocorrelation functions of the three magnetic variation components. Statistical errors involved in mapping the external and internal fields are quantified and displayed over the mapping region. Examples of field mapping and of separation into external and internal components are presented. A comparison between the three-dimensional field separation and a two-dimensional separation from a single chain of stations shows that significant differences can arise in the inferred internal component.

  1. Analysis of modified SMI method for adaptive array weight control

    NASA Technical Reports Server (NTRS)

    Dilsavor, R. L.; Moses, R. L.

    1989-01-01

    An adaptive array is applied to the problem of receiving a desired signal in the presence of weak interference signals which need to be suppressed. A modification, suggested by Gupta, of the sample matrix inversion (SMI) algorithm controls the array weights. In the modified SMI algorithm, interference suppression is increased by subtracting a fraction F of the noise power from the diagonal elements of the estimated covariance matrix. Given the true covariance matrix and the desired signal direction, the modified algorithm is shown to maximize a well-defined, intuitive output power ratio criterion. Expressions are derived for the expected value and variance of the array weights and output powers as a function of the fraction F and the number of snapshots used in the covariance matrix estimate. These expressions are compared with computer simulation and good agreement is found. A trade-off is found to exist between the desired level of interference suppression and the number of snapshots required in order to achieve that level with some certainty. The removal of noise eigenvectors from the covariance matrix inverse is also discussed with respect to this application. Finally, the type and severity of errors which occur in the covariance matrix estimate are characterized through simulation.

  2. Molecular-beacon-based array for sensitive DNA analysis.

    PubMed

    Yao, Gang; Tan, Weihong

    2004-08-15

    Molecular beacon (MB) DNA probes provide a new way for sensitive label-free DNA/protein detection in homogeneous solution and biosensor development. However, a relatively low fluorescence enhancement after the hybridization of the surface-immobilized MB hinders its effective biotechnological applications. We have designed new molecular beacon probes to enable a larger separation between the surface and the surface-bound MBs. Using these MB probes, we have developed a DNA array on avidin-coated cover slips and have improved analytical sensitivity. A home-built wide-field optical setup was used for imaging the array. Our results show that linker length, pH, and ionic strength have obvious effects on the performance of the surface-bound MBs. The fluorescence enhancement of the new MBs after hybridization has been increased from 2 to 5.5. The MB-based DNA array could be used for DNA detection with high sensitivity, enabling simultaneous multiple-target bioanalysis in a variety of biotechnological applications.

  3. Analysis of sky contributions to system temperature for low frequency SKA aperture array geometries

    NASA Astrophysics Data System (ADS)

    Razavi-Ghods, N.; de Lera Acedo, E.; El-Makadema, A.; Alexander, P.; Brown, A.

    2012-03-01

    The new generation of radio telescopes, such as the proposed Square Kilometer Array (SKA) and the Low-Frequency Array (LOFAR) rely heavily on the use of very large phased aperture arrays operating over wide band-widths at frequency ranges up to approximately 1.4 GHz. The SKA in particular will include aperture arrays consisting of many thousands of elements per station providing un-paralleled survey speeds. Currently two different arrays (from nominally 70 MHz to 450 MHz and from 400 MHz to 1.4 GHz) are being studied for inclusion within the overall SKA configuration. In this paper we aim to analyze the array contribution to system temperature for a number of regular and irregular planar antenna array configurations which are possible geometries for the low-frequency SKA (sparse disconnected arrays). We focus on the sub-500 MHz band where the real sky contribution to system temperature (T sys ) is highly significant and dominants the overall system noise temperature. We compute the sky noise contribution to T sys by simulating the far field response of a number of SKA stations and then convolve that with the sky brightness temperature distribution from the Haslam 408 MHz survey which is then scaled to observations at 100 MHz. Our analysis of array temperature is carried out by assuming observations of three cold regions above and below the Galactic plane. The results show the advantages of regular arrays when sampled at the Nyquist rate as well as their disadvantages in the form of grating lobes when under-sampled in comparison to non-regular arrays.

  4. Thermal correlation analysis of a long-span suspension bridge static responses

    NASA Astrophysics Data System (ADS)

    Zhou, Linren; Chen, Lan; Xia, Yong; Brownjohn, James M. W.

    2016-04-01

    Harsh service environment degenerates the performance of bridges even leads to catastrophic collapse. Structural temperature has been widely recognized as one of the most negative environmental effects on bridges. The structural responses are deeply affected by the variation and distribution of temperatures on bridges. Therefore, identifying the correlations between them is a significant issue for structural safety assessment. In this study, the relationships between the temperature induced static response and the surrounding weather factors are investigated based on the long-term field measurements of a long-span suspension bridge. The correlations of the meteorological parameters between the bridge filed and the nearby weather station, and the relations of structural static responses to the air temperature, are investigated. The results indicate that relationships of meteorological parameters between nearby weather station and the bridge field can be predicted. The correlation between the static responses and the air temperature and is remarkable with high correlation coefficient. The conclusions are expected to provide reference for the design and evaluation of longspan suspension bridges.

  5. Computational Analysis of Static and Dynamic Behaviour of Magnetic Suspensions and Magnetic Bearings

    NASA Technical Reports Server (NTRS)

    Britcher, Colin P. (Editor); Groom, Nelson J.

    1996-01-01

    Static modelling of magnetic bearings is often carried out using magnetic circuit theory. This theory cannot easily include nonlinear effects such as magnetic saturation or the fringing of flux in air-gaps. Modern computational tools are able to accurately model complex magnetic bearing geometries, provided some care is exercised. In magnetic suspension applications, the magnetic fields are highly three-dimensional and require computational tools for the solution of most problems of interest. The dynamics of a magnetic bearing or magnetic suspension system can be strongly affected by eddy currents. Eddy currents are present whenever a time-varying magnetic flux penetrates a conducting medium. The direction of flow of the eddy current is such as to reduce the rate-of-change of flux. Analytic solutions for eddy currents are available for some simplified geometries, but complex geometries must be solved by computation. It is only in recent years that such computations have been considered truly practical. At NASA Langley Research Center, state-of-the-art finite-element computer codes, 'OPERA', 'TOSCA' and 'ELEKTRA' have recently been installed and applied to the magnetostatic and eddy current problems. This paper reviews results of theoretical analyses which suggest general forms of mathematical models for eddy currents, together with computational results. A simplified circuit-based eddy current model proposed appears to predict the observed trends in the case of large eddy current circuits in conducting non-magnetic material. A much more difficult case is seen to be that of eddy currents in magnetic material, or in non-magnetic material at higher frequencies, due to the lower skin depths. Even here, the dissipative behavior has been shown to yield at least somewhat to linear modelling. Magnetostatic and eddy current computations have been carried out relating to the Annular Suspension and Pointing System, a prototype for a space payload pointing and vibration

  6. Suspension trauma

    PubMed Central

    Lee, Caroline; Porter, Keith M

    2007-01-01

    Suspension trauma (also known as “harness‐induced pathology” or “orthostatic shock while suspended”) is the development of presyncopal symptoms and loss of consciousness if the human body is held motionless in a vertical position for a period of time. It has been described in experiments of personal fall protection, and has been implicated in causes of death in mountaineering accidents, but it seems neither to be widely known about nor to have been presented to the medical profession. This article highlights the potential existence of suspension trauma and suggests that more robust medical research using modern harnesses and healthy volunteers would be beneficial to assess whether this is purely a theoretical risk. PMID:17384373

  7. Oligonucleotide arrays vs. metaphase-comparative genomic hybridisation and BAC arrays for single-cell analysis: first applications to preimplantation genetic diagnosis for Robertsonian translocation carriers.

    PubMed

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈ 20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers. PMID:25415307

  8. Oligonucleotide Arrays vs. Metaphase-Comparative Genomic Hybridisation and BAC Arrays for Single-Cell Analysis: First Applications to Preimplantation Genetic Diagnosis for Robertsonian Translocation Carriers

    PubMed Central

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers. PMID:25415307

  9. Oligonucleotide arrays vs. metaphase-comparative genomic hybridisation and BAC arrays for single-cell analysis: first applications to preimplantation genetic diagnosis for Robertsonian translocation carriers.

    PubMed

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈ 20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers.

  10. Spot Weld Analysis With 2D Ultrasonic Arrays

    PubMed Central

    Denisov, A. A.; Shakarji, C. M.; Lawford, B. B.; Maev, R. Gr.; Paille, J. M.

    2004-01-01

    This paper describes a threefold method of testing the performance of an array-based ultrasonic tool for nondestructive testing of spot welds. The tool is described in its capabilities, use, and advantages over existing counterparts. Performance testing for and the results from carrying out the testing are described. The three performance testing methods include 1) the use of calibrated samples, 2) comparisons with actual spot-welds, and 3) a performance evaluation of the embedded fitting software. The test of the fitting software was carried out by a comparison of results with reference fits supplied by the National Institute of Standards and Technology. PMID:27366607

  11. Dielectric analysis of Escherichia coli suspensions in the light of the theory of interfacial polarization.

    PubMed Central

    Asami, K; Hanai, T; Koizumi, N

    1980-01-01

    Dielectric measurements of Escherichia coli suspensions were carried out over a frequency range from 10 kHz to 100 MHz, and marked dielectric dispersions having characteristic frequency of approximately 1 MHz were observed. On the basis of the cell model that a spheroid is covered with two confocal shells, a dielectric theory was developed to determine accurately four electrical parameters for E. coli cells such as the conductivity of the cell wall, the dielectric constant of the cell membrane, and the dielectric constant and the conductivity of the protoplasm. The observed data were analyzed by means of the procedure based on the dielectric theory to yield a set of plausible electrical parameters for the cells. By taking account of the size distribution of the cells and a dielectric relaxation of the protoplasm, the observed dispersion curves were successfully reconstituted by the present theory. PMID:7020783

  12. Analysis of liquid-solids suspension velocities and concentrations obtained by NMR imaging

    SciTech Connect

    Ding, J.; Lyczkowski, R.W.; Sha, W.T. ); Altobelli, S.A.; Fukushima, E. )

    1992-09-01

    COMMIX-M, a three-dimensional transient and steady-state computer program written in Cartesian and cylindrical coordinates, has been developed by Argonne National Laboratory. This computer program is capable of analyzing multiphase flow and heat transfer and utilizes the separate phases model wherein each phase has its own mass, momentum, and energy equations. This computer program is in its early stages of development for application to test various interphase interaction models and to predict design and processing of dense fluid-solids suspension systems. COMMIX-M contains preliminary constitutive relationships for interfacial drag, solids viscosities and stresses to describe the solids rheology, and shear lift forces from the literature. Also included is a solids partial slip boundary condition to allow non-zero tangential velocity at the tube walls. Analyses of some of the steady-state, fully-developed isothermal carrier fluid velocity and solids concentration data of Altobelli et al. and Sinton and Chow are presented. These experimental data obtained using three-dimensional time-of-flight nuclear magnetic (NMR) imaging techniques were carefully performed and represent some of the best available open literature data of their kind. NMR imaging offers powerful techniques to non-intrusively determine three-dimensional time-dependent velocity and concentration fields to assist development and validation of the constitutive models and the computer programs describing concentrated suspensions. Analyses of these NMR data, together with comparisons of computed and measured concentration and velocity profiles provide some insights into the mechanisms governing the observed phenomena. Recommendations for future research are given. To the authors' knowledge, these are the first such comparisons of theory and experiment.

  13. Analysis of liquid-solids suspension velocities and concentrations obtained by NMR imaging

    SciTech Connect

    Ding, J.; Lyczkowski, R.W.; Sha, W.T.; Altobelli, S.A.; Fukushima, E.

    1992-09-01

    COMMIX-M, a three-dimensional transient and steady-state computer program written in Cartesian and cylindrical coordinates, has been developed by Argonne National Laboratory. This computer program is capable of analyzing multiphase flow and heat transfer and utilizes the separate phases model wherein each phase has its own mass, momentum, and energy equations. This computer program is in its early stages of development for application to test various interphase interaction models and to predict design and processing of dense fluid-solids suspension systems. COMMIX-M contains preliminary constitutive relationships for interfacial drag, solids viscosities and stresses to describe the solids rheology, and shear lift forces from the literature. Also included is a solids partial slip boundary condition to allow non-zero tangential velocity at the tube walls. Analyses of some of the steady-state, fully-developed isothermal carrier fluid velocity and solids concentration data of Altobelli et al. and Sinton and Chow are presented. These experimental data obtained using three-dimensional time-of-flight nuclear magnetic (NMR) imaging techniques were carefully performed and represent some of the best available open literature data of their kind. NMR imaging offers powerful techniques to non-intrusively determine three-dimensional time-dependent velocity and concentration fields to assist development and validation of the constitutive models and the computer programs describing concentrated suspensions. Analyses of these NMR data, together with comparisons of computed and measured concentration and velocity profiles provide some insights into the mechanisms governing the observed phenomena. Recommendations for future research are given. To the authors` knowledge, these are the first such comparisons of theory and experiment.

  14. Tremor patches in Cascadia revealed by seismic array analysis

    NASA Astrophysics Data System (ADS)

    Ghosh, Abhijit; Vidale, John E.; Sweet, Justin R.; Creager, Kenneth C.; Wech, Aaron G.

    2009-09-01

    Episodic tremor and slip (ETS) events in Cascadia have recently been observed, illuminating the general area that radiates seismic energy in the form of non-volcanic tremor (NVT). However, the picture of the ETS zone remains fuzzy because of difficulties in tremor detection and location. To observe the intimate details of tremor, we deployed a dense 84-element small-aperture seismic array on the Olympic Peninsula, Washington, above the tremor migration path. It recorded the main ETS event in May 2008, as well as a weaker tremor episode two months earlier. Using a beamforming technique, we are able to capture and track tremor activity with an unprecedented resolution from southern Puget Sound to the Strait of Juan de Fuca. The array technique reveals up to four times more duration of tremor compared to the conventional envelope cross-correlation method. Our findings suggest that NVT is not uniformly distributed on the subduction interface, and unveils several distinct patches that release much of the tremor moment. The patches appear to be devoid of ordinary earthquakes, and may indicate the heterogeneity in fault strength that affects the modes of stress release within the ETS zone.

  15. Quartz crystal microbalance (QCM) arrays for solution analysis

    SciTech Connect

    Schneider, T.W.; Frye, G.C.; Martin, S.J.; Kottenstette, R.J.; Osbourn, G.C.; Bartholomew, J.W.; Weisenbach, L.; Bohuszewicz, T.V.; Doughty, D.H.

    1997-01-01

    Quartz crystal microbalances (QCMs) are piezoelectric thickness-shear-mode resonators where the resonant frequency has long been known to vary linearly with the mass of rigid layers on the surface when the device is in contact with air. This reports summarizes the results from a Laboratory Directed Research and Development effort to use an array of QCMs to measure and identify volatile organic compounds (VOCs) in water solutions. A total of nine polymer-coated QCMs were tested with varying concentrations of twelve VOCs while frequency and damping voltage were measured. Results from these experiments were analyzed using a Sandia-developed pattern recognition technique called visually empirical region of influence (VERI) developed at Sandia. The VERI analyses of data with up to 16% and 50% sensitivity drifts were carried out on an array with six signals obtained from five sensors. The results indicate that better than 98% and 88% correct chemical recognition is maintained for the 16% and 50% drifts, respectively. These results indicate a good degree of robustness for these sensor films.

  16. Performance Analysis of a Cost-Effective Electret Condenser Microphone Directional Array

    NASA Technical Reports Server (NTRS)

    Humphreys, William M., Jr.; Gerhold, Carl H.; Zuckerwar, Allan J.; Herring, Gregory C.; Bartram, Scott M.

    2003-01-01

    Microphone directional array technology continues to be a critical part of the overall instrumentation suite for experimental aeroacoustics. Unfortunately, high sensor cost remains one of the limiting factors in the construction of very high-density arrays (i.e., arrays containing several hundred channels or more) which could be used to implement advanced beamforming algorithms. In an effort to reduce the implementation cost of such arrays, the authors have undertaken a systematic performance analysis of a prototype 35-microphone array populated with commercial electret condenser microphones. An ensemble of microphones coupling commercially available electret cartridges with passive signal conditioning circuitry was fabricated for use with the Langley Large Aperture Directional Array (LADA). A performance analysis consisting of three phases was then performed: (1) characterize the acoustic response of the microphones via laboratory testing and calibration, (2) evaluate the beamforming capability of the electret-based LADA using a series of independently controlled point sources in an anechoic environment, and (3) demonstrate the utility of an electret-based directional array in a real-world application, in this case a cold flow jet operating at high subsonic velocities. The results of the investigation revealed a microphone frequency response suitable for directional array use over a range of 250 Hz - 40 kHz, a successful beamforming evaluation using the electret-populated LADA to measure simple point sources at frequencies up to 20 kHz, and a successful demonstration using the array to measure noise generated by the cold flow jet. This paper presents an overview of the tests conducted along with sample data obtained from those tests.

  17. Array analysis of regional Pn and Pg wavefields from the Nevada Test Site

    SciTech Connect

    Leonard, M.A. . Dept. of Geology and Geophysics Lawrence Berkeley Lab., CA )

    1991-06-01

    Small-aperture high-frequency seismic arrays with dimensions of a few kilometers or less, can improve our ability to seismically monitor compliance with a low-yield Threshold Test Ban Treaty. This work studies the characteristics and effectiveness of array processing of the regional Pn and Pg wavefields generated by underground nuclear explosions at the Nevada Test Site. Waveform data from the explosion HARDIN (m{sub b} = 5.5) is recorded at a temporary 12-element, 3-component, 1.5 km-aperture array sited in an area of northern Nevada. The explosions VILLE (m{sub b} = 4.4) and SALUT (m{sub b} = 5.5) are recorded at two arrays sited in the Mojave desert, one a 96-element vertical-component 7 km-aperture array and the other a 155-element vertical-component 4 km-aperture array. Among the mean spectra for the m{sub b} = 5.5 events there are significant differences in low-frequency spectral amplitudes between array sites. The spectra become nearly identical beyond about 6 Hz. Spectral ratios are used to examine seismic source properties and the partitioning of energy between Pn and Pg. Frequency-wavenumber analysis at the 12-element array is used to obtain estimates of signal gain, phase velocity, and source azimuth. This analysis reveals frequency-dependent biases in velocity and azimuth of the coherent Pn and Pg arrivals. Signal correlation, the principal factor governing array performance, is examined in terms of spatial coherence estimates. The coherence is found to vary between the three sites. In all cases the coherence of Pn is greater than that for Pg. 81 refs., 92 figs., 5 tabs.

  18. Tissue matrix arrays for high throughput screening and systems analysis of cell function

    PubMed Central

    Beachley, Vince Z.; Wolf, Matthew T.; Sadtler, Kaitlyn; Manda, Srikanth S.; Jacobs, Heather; Blatchley, Michael; Bader, Joel S.; Pandey, Akhilesh; Pardoll, Drew; Elisseeff, Jennifer H.

    2015-01-01

    Cell and protein arrays have demonstrated remarkable utility in the high-throughput evaluation of biological responses; however, they lack the complexity of native tissue and organs. Here, we describe tissue extracellular matrix (ECM) arrays for screening biological outputs and systems analysis. We spotted processed tissue ECM particles as two-dimensional arrays or incorporated them with cells to generate three-dimensional cell-matrix microtissue arrays. We then investigated the response of human stem, cancer, and immune cells to tissue ECM arrays originating from 11 different tissues, and validated the 2D and 3D arrays as representative of the in vivo microenvironment through quantitative analysis of tissue-specific cellular responses, including matrix production, adhesion and proliferation, and morphological changes following culture. The biological outputs correlated with tissue proteomics, and network analysis identified several proteins linked to cell function. Our methodology enables broad screening of ECMs to connect tissue-specific composition with biological activity, providing a new resource for biomaterials research and translation. PMID:26480475

  19. Design, optimization, and analysis of a self-deploying PV tent array

    NASA Astrophysics Data System (ADS)

    Collozza, Anthony J.

    1991-06-01

    A tent shaped PV array was designed and the design was optimized for maximum specific power. In order to minimize output power variation a tent angle of 60 deg was chosen. Based on the chosen tent angle an array structure was designed. The design considerations were minimal deployment time, high reliability, and small stowage volume. To meet these considerations the array was chosen to be self-deployable, form a compact storage configuration, using a passive pressurized gas deployment mechanism. Each structural component of the design was analyzed to determine the size necessary to withstand the various forces to which it would be subjected. Through this analysis the component weights were determined. An optimization was performed to determine the array dimensions and blanket geometry which produce the maximum specific power for a given PV blanket. This optimization was performed for both lunar and Martian environmental conditions. Other factors such as PV blanket types, structural material, and wind velocity (for Mars array), were varied to determine what influence they had on the design point. The performance specifications for the array at both locations and with each type of PV blanket were determined. These specifications were calculated using the Arimid fiber composite as the structural material. The four PV blanket types considered were silicon, GaAs/Ge, GaAsCLEFT, and amorphous silicon. The specifications used for each blanket represented either present day or near term technology. For both the Moon and Mars the amorphous silicon arrays produced the highest specific power.

  20. Design, optimization, and analysis of a self-deploying PV tent array

    NASA Technical Reports Server (NTRS)

    Collozza, Anthony J.

    1991-01-01

    A tent shaped PV array was designed and the design was optimized for maximum specific power. In order to minimize output power variation a tent angle of 60 deg was chosen. Based on the chosen tent angle an array structure was designed. The design considerations were minimal deployment time, high reliability, and small stowage volume. To meet these considerations the array was chosen to be self-deployable, form a compact storage configuration, using a passive pressurized gas deployment mechanism. Each structural component of the design was analyzed to determine the size necessary to withstand the various forces to which it would be subjected. Through this analysis the component weights were determined. An optimization was performed to determine the array dimensions and blanket geometry which produce the maximum specific power for a given PV blanket. This optimization was performed for both lunar and Martian environmental conditions. Other factors such as PV blanket types, structural material, and wind velocity (for Mars array), were varied to determine what influence they had on the design point. The performance specifications for the array at both locations and with each type of PV blanket were determined. These specifications were calculated using the Arimid fiber composite as the structural material. The four PV blanket types considered were silicon, GaAs/Ge, GaAsCLEFT, and amorphous silicon. The specifications used for each blanket represented either present day or near term technology. For both the Moon and Mars the amorphous silicon arrays produced the highest specific power.

  1. Equivalent circuit-based analysis of CMUT cell dynamics in arrays.

    PubMed

    Oguz, H K; Atalar, Abdullah; Köymen, Hayrettin

    2013-05-01

    Capacitive micromachined ultrasonic transducers (CMUTs) are usually composed of large arrays of closely packed cells. In this work, we use an equivalent circuit model to analyze CMUT arrays with multiple cells. We study the effects of mutual acoustic interactions through the immersion medium caused by the pressure field generated by each cell acting upon the others. To do this, all the cells in the array are coupled through a radiation impedance matrix at their acoustic terminals. An accurate approximation for the mutual radiation impedance is defined between two circular cells, which can be used in large arrays to reduce computational complexity. Hence, a performance analysis of CMUT arrays can be accurately done with a circuit simulator. By using the proposed model, one can very rapidly obtain the linear frequency and nonlinear transient responses of arrays with an arbitrary number of CMUT cells. We performed several finite element method (FEM) simulations for arrays with small numbers of cells and showed that the results are very similar to those obtained by the equivalent circuit model.

  2. Panax ginseng Adventitious Root Suspension Culture: Protocol for Biomass Production and Analysis of Ginsenosides by High Pressure Liquid Chromatography.

    PubMed

    Murthy, Hosakatte Niranjana; Paek, Kee Yoeup

    2016-01-01

    Panax ginseng C.A. Meyer (Korean ginseng) is a popular herbal medicine. It has been used in Chinese and Oriental medicines since thousands of years. Ginseng products are generally used as a tonic and an adaptogen to resist the adverse influence of a wide range of physical, chemical and biological factors, and to restore homeostasis. Ginsenosides or ginseng saponins are the principal active ingredients of ginseng. Since ginseng cultivation process is very slow and needs specific environment for field cultivation, cell and tissue cultures are sought as alternatives for the production of ginseng biomass and bioactive compounds. In this chapter, we focus on methods of induction of adventitious roots from ginseng roots, establishment of adventitious root suspension cultures using bioreactors, procedures for processing of adventitious roots, and analysis of ginsenosides by high pressure liquid chromatography. PMID:27108314

  3. Panax ginseng Adventitious Root Suspension Culture: Protocol for Biomass Production and Analysis of Ginsenosides by High Pressure Liquid Chromatography.

    PubMed

    Murthy, Hosakatte Niranjana; Paek, Kee Yoeup

    2016-01-01

    Panax ginseng C.A. Meyer (Korean ginseng) is a popular herbal medicine. It has been used in Chinese and Oriental medicines since thousands of years. Ginseng products are generally used as a tonic and an adaptogen to resist the adverse influence of a wide range of physical, chemical and biological factors, and to restore homeostasis. Ginsenosides or ginseng saponins are the principal active ingredients of ginseng. Since ginseng cultivation process is very slow and needs specific environment for field cultivation, cell and tissue cultures are sought as alternatives for the production of ginseng biomass and bioactive compounds. In this chapter, we focus on methods of induction of adventitious roots from ginseng roots, establishment of adventitious root suspension cultures using bioreactors, procedures for processing of adventitious roots, and analysis of ginsenosides by high pressure liquid chromatography.

  4. Rigorous electromagnetic analysis of dual-closed-surface microlens arrays

    NASA Astrophysics Data System (ADS)

    Lin, Jie; Ye, Jiasheng; Liu, Shutian

    2007-10-01

    In this paper, we investigated the focal performance of the dual-closed-surface microlens arrays (DCSMAs) based on rigorous electromagnetic theory and boundary element method (BEM) in the case of TE polarization. The DCSMAs are designed with different substrate thickness and different distance between microlenses. DCSMAs designed according to different wavelengths are surveyed. The DCSMAs with different incident angles are also studied. Several focusing performance measures, such as the focal spot size, the focal position on the preset focal plane, the diffraction efficiency and the normalized transmitted power, are presented. Numerical results indicate the DCSMAs with different parameters can implement focusing beams and the focal performance of DCSMAs is easily influenced by the substrate thickness and the incident wavelength. Furthermore, the optimal thickness for the maximal diffraction efficiency of the DCSMAs is given. It is expected that the DCSMAs may be used as a parallel processing device in micro-optics systems.

  5. Analysis of the ICE combiner for multiple antenna arraying

    NASA Technical Reports Server (NTRS)

    Foster, C.; Marina, M.

    1987-01-01

    The passage of the International Cometary Explorer (ICE) through the tail of comet Giacobini-Zinner took place on September 11, 1985, at approximately 11:04 GMT. The signal-to-noise ratio of the data received from the ICE spacecraft during the comet encounter was improved by arraying the 64-m antenna channels A and B (RCP and LCP) with the two 34-m antennas. Specially designed combiners were built to combine the signals received by the three antennas at the different DSN sites to ensure that the spacecraft's weak signal was received. Although the ICE spacecraft was built with a 5-W transmitter and with a small antenna designed to provide data from no farther than 1 million miles, these combiners provided enough signal margin during the encounter to receive the ICE transmitted data from within the tail of comet Giacobini-Zinner, 44 million miles from earth.

  6. Mir Cooperative Solar Array Flight Performance Data and Computational Analysis

    NASA Technical Reports Server (NTRS)

    Kerslake, Thomas W.; Hoffman, David J.

    1997-01-01

    The Mir Cooperative Solar Array (MCSA) was developed jointly by the United States (US) and Russia to provide approximately 6 kW of photovoltaic power to the Russian space station Mir. The MCSA was launched to Mir in November 1995 and installed on the Kvant-1 module in May 1996. Since the MCSA photovoltaic panel modules (PPMs) are nearly identical to those of the International Space Station (ISS) photovoltaic arrays, MCSA operation offered an opportunity to gather multi-year performance data on this technology prior to its implementation on ISS. Two specially designed test sequences were executed in June and December 1996 to measure MCSA performance. Each test period encompassed 3 orbital revolutions whereby the current produced by the MCSA channels was measured. The temperature of MCSA PPMs was also measured. To better interpret the MCSA flight data, a dedicated FORTRAN computer code was developed to predict the detailed thermal-electrical performance of the MCSA. Flight data compared very favorably with computational performance predictions. This indicated that the MCSA electrical performance was fully meeting pre-flight expectations. There were no measurable indications of unexpected or precipitous MCSA performance degradation due to contamination or other causes after 7 months of operation on orbit. Power delivered to the Mir bus was lower than desired as a consequence of the retrofitted power distribution cabling. The strong correlation of experimental and computational results further bolsters the confidence level of performance codes used in critical ISS electric power forecasting. In this paper, MCSA flight performance tests are described as well as the computational modeling behind the performance predictions.

  7. A multifunctional microfluidic droplet-array chip for analysis by electrospray ionization mass spectrometry.

    PubMed

    Su, Yuan; Zhu, Ying; Fang, Qun

    2013-05-21

    This paper describes a multifunctional semi-closed droplet-array chip coupled with electrospray ionization mass spectrometry (ESI-MS) detection for multiple sample pretreatment and analysis. A novel interfacing method for coupling droplet system with ESI-MS was proposed using a sampling probe-two-dimensional (2D) droplet-array strategy. The 2D droplet-array system was composed of an 8 × 8 microwell array chip for droplet storage and a layer of oil covering the droplets served as a "virtual wall" to avoid droplet evaporation or cross-contamination. An L-shaped capillary was adopted as the interface of the droplet array and ESI-MS, using its inlet end as a sampling probe for droplets and its outlet with a tip size of ~20 μm as an electrospray emitter, without the need for any droplet extraction device. The droplet analysis was performed by moving the droplet-array chip to allow the capillary sampling probe to sequentially enter into the droplets through the oil and introduce the sample solution into the capillary emitter for MS detection. The MS analysis time for each droplet sample was 40 s with a sample consumption of ca. 13 nL. A good repeatability of 5.7% (RSD, n = 9) was obtained for 10(-6) M reserpine droplet analysis. The uses of the semi-closed 2D droplet array and off-line interfacing mode provide the system with the substantial flexibility and controllability in droplet indexing, multi-step manipulating, and on-demand sampling for MS analysis. We applied the present system in multi-step pretreatment and identification of small amounts of proteomic samples of myoglobin and cytochrome C, including in-droplet protein reduction, alkylation, digestion, and purification based on solid-phase extraction, matrix modification, sample droplet introduction under flow injection mode, and ESI-MS detection. PMID:23525283

  8. Theory and design of compact hybrid microphone arrays on two-dimensional planes for three-dimensional soundfield analysis.

    PubMed

    Chen, Hanchi; Abhayapala, Thushara D; Zhang, Wen

    2015-11-01

    Soundfield analysis based on spherical harmonic decomposition has been widely used in various applications; however, a drawback is the three-dimensional geometry of the microphone arrays. In this paper, a method to design two-dimensional planar microphone arrays that are capable of capturing three-dimensional (3D) spatial soundfields is proposed. Through the utilization of both omni-directional and first order microphones, the proposed microphone array is capable of measuring soundfield components that are undetectable to conventional planar omni-directional microphone arrays, thus providing the same functionality as 3D arrays designed for the same purpose. Simulations show that the accuracy of the planar microphone array is comparable to traditional spherical microphone arrays. Due to its compact shape, the proposed microphone array greatly increases the feasibility of 3D soundfield analysis techniques in real-world applications.

  9. Teleseismic array analysis of upper mantle compressional velocity structure. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Walck, M. C.

    1984-01-01

    Relative array analysis of upper mantle lateral velocity variations in southern California, analysis techniques for dense data profiles, the P-wave upper mantle structure beneath an active spreading center: the Gulf of California, and the upper mantle under the Cascade ranges: a comparison with the Gulf of California are presented.

  10. Analysis of costs of gallium arsenide and silicon solar arrays for space power applications

    NASA Technical Reports Server (NTRS)

    Jefferies, K. S.

    1981-01-01

    A parametric analysis was performed to compare the costs of silicon and gallium arsenide arrays for Earth orbital missions. The missions included electric power in low Earth orbit (LEO), electric power in geosynchronous Earth orbit (GEO), and power for electric propulsion of a LEO to GEO orbit transfer mission. Inputs to the analysis for all missions included launch and purchase costs of the array. For the orbit transfer mission, the launch and purchase costs of the electric propulsion system were added. Radiation flux as a function of altitude and rediation tolerance as a function of cell type were used to determine power degradation for each mission. Curves were generated that show the sensitivity of launch-array cost and total mission cost to a variety of input parameters for each mission. These parameters included mission duration, cover glass thickness, array specific cost, array specific mass, and solar cell efficiency. Solar concentration was considered and the sensitivities of cost to concentration ratio, concentrator costs, and concentrator mass were also evaluated. Results indicate that solar cell development should give a high priority to reducing array costs and that the development of low cost, lightweight, solar concentrators should be pursued.

  11. ArrayExpress update--trends in database growth and links to data analysis tools.

    PubMed

    Rustici, Gabriella; Kolesnikov, Nikolay; Brandizi, Marco; Burdett, Tony; Dylag, Miroslaw; Emam, Ibrahim; Farne, Anna; Hastings, Emma; Ison, Jon; Keays, Maria; Kurbatova, Natalja; Malone, James; Mani, Roby; Mupo, Annalisa; Pedro Pereira, Rui; Pilicheva, Ekaterina; Rung, Johan; Sharma, Anjan; Tang, Y Amy; Ternent, Tobias; Tikhonov, Andrew; Welter, Danielle; Williams, Eleanor; Brazma, Alvis; Parkinson, Helen; Sarkans, Ugis

    2013-01-01

    The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data.

  12. Ion Trap Array-Based Systems And Methods For Chemical Analysis

    DOEpatents

    Whitten, William B [Oak Ridge, TN; Ramsey, J Michael [Knoxville, TN

    2005-08-23

    An ion trap-based system for chemical analysis includes an ion trap array. The ion trap array includes a plurality of ion traps arranged in a 2-dimensional array for initially confining ions. Each of the ion traps comprise a central electrode having an aperture, a first and second insulator each having an aperture sandwiching the central electrode, and first and second end cap electrodes each having an aperture sandwiching the first and second insulator. A structure for simultaneously directing a plurality of different species of ions out from the ion traps is provided. A spectrometer including a detector receives and identifies the ions. The trap array can be used with spectrometers including time-of-flight mass spectrometers and ion mobility spectrometers.

  13. A cross-reactive sensor array for the fluorescence qualitative analysis of heavy metal ions.

    PubMed

    Kang, Huaizhi; Lin, Liping; Rong, Mingcong; Chen, Xi

    2014-11-01

    A cross-reactive sensor array using mercaptopropionic acid modified cadmium telluride (CdTe), glutathione modified CdTe, poly(methacrylic acid) modified silver nanoclusters, bovine serum albumin modified gold nanoclusters, rhodamine derivative and calcein blue as fluorescent indicators has been designed for the detection of seven heavy metal ions (Ag(+), Hg(2+), Pb(2+), Cu(2+), Cr(3+), Mn(2+) and Cd(2+)). The discriminatory capacity of the sensor array to different heavy metal ions in different pH solutions has been tested and the results have been analyzed with linear discriminant analysis. Results showed that the sensor array could be used to qualitatively analyze the selected heavy metal ions. The array performance was also evaluated in the identification of known and unknown samples and the preliminary results suggested the promising practicability of the designed sensor assay.

  14. ArrayExpress update—trends in database growth and links to data analysis tools

    PubMed Central

    Rustici, Gabriella; Kolesnikov, Nikolay; Brandizi, Marco; Burdett, Tony; Dylag, Miroslaw; Emam, Ibrahim; Farne, Anna; Hastings, Emma; Ison, Jon; Keays, Maria; Kurbatova, Natalja; Malone, James; Mani, Roby; Mupo, Annalisa; Pedro Pereira, Rui; Pilicheva, Ekaterina; Rung, Johan; Sharma, Anjan; Tang, Y. Amy; Ternent, Tobias; Tikhonov, Andrew; Welter, Danielle; Williams, Eleanor; Brazma, Alvis; Parkinson, Helen; Sarkans, Ugis

    2013-01-01

    The ArrayExpress Archive of Functional Genomics Data (http://www.ebi.ac.uk/arrayexpress) is one of three international functional genomics public data repositories, alongside the Gene Expression Omnibus at NCBI and the DDBJ Omics Archive, supporting peer-reviewed publications. It accepts data generated by sequencing or array-based technologies and currently contains data from almost a million assays, from over 30 000 experiments. The proportion of sequencing-based submissions has grown significantly over the last 2 years and has reached, in 2012, 15% of all new data. All data are available from ArrayExpress in MAGE-TAB format, which allows robust linking to data analysis and visualization tools, including Bioconductor and GenomeSpace. Additionally, R objects, for microarray data, and binary alignment format files, for sequencing data, have been generated for a significant proportion of ArrayExpress data. PMID:23193272

  15. Development of Microreactor Array Chip-Based Measurement System for Massively Parallel Analysis of Enzymatic Activity

    NASA Astrophysics Data System (ADS)

    Hosoi, Yosuke; Akagi, Takanori; Ichiki, Takanori

    Microarray chip technology such as DNA chips, peptide chips and protein chips is one of the promising approaches for achieving high-throughput screening (HTS) of biomolecule function since it has great advantages in feasibility of automated information processing due to one-to-one indexing between array position and molecular function as well as massively parallel sample analysis as a benefit of down-sizing and large-scale integration. Mostly, however, the function that can be evaluated by such microarray chips is limited to affinity of target molecules. In this paper, we propose a new HTS system of enzymatic activity based on microreactor array chip technology. A prototype of the automated and massively parallel measurement system for fluorometric assay of enzymatic reactions was developed by the combination of microreactor array chips and a highly-sensitive fluorescence microscope. Design strategy of microreactor array chips and an optical measurement platform for the high-throughput enzyme assay are discussed.

  16. Experimental and numerical analysis of clamped joints in front motorbike suspensions

    NASA Astrophysics Data System (ADS)

    Croccolo, D.; de Agostinis, M.; Vincenzi, N.

    2010-06-01

    Clamped joints are shaft-hub connections used, as an instance, in front motorbike suspensions to lock the steering plates with the legs and the legs with the wheel pin, by means of one or two bolts. The preloading force, produced during the tightening process, should be evaluated accurately, since it must lock safely the shaft, without overcoming the yielding point of the hub. Firstly, friction coefficients have been evaluated on “ad-hoc designed” specimens, by applying the Design of Experiment approach: the applied tightening torque has been precisely related to the imposed preloading force. Then, the tensile state of clamps have been evaluated both via FEM and by leveraging some design formulae proposed by the Authors as function of the preloading force and of the clamp geometry. Finally, the results have been compared to those given by some strain gauges applied on the tested clamps: the discrepancies between numerical analyses, the design formulae and the experimental results remains under a threshold of 10%.

  17. Inverse problem analysis of pluripotent stem cell aggregation dynamics in stirred-suspension cultures

    PubMed Central

    Rostami, Mahboubeh Rahmati; Wu, Jincheng; Tzanakakis, Emmanuel S.

    2015-01-01

    The cultivation of stem cells as aggregates in scalable bioreactor cultures is an appealing modality for the large-scale manufacturing of stem cell products. Aggregation phenomena are central to such bioprocesses affecting the viability, proliferation and differentiation trajectory of stem cells but a quantitative framework is currently lacking. A population balance equation (PBE) model was used to describe the temporal evolution of the embryonic stem cell (ESC) cluster size distribution by considering collision-induced aggregation and cell proliferation in a stirred-suspension vessel. For ESC cultures at different agitation rates, the aggregation kernel representing the aggregation dynamics was successfully recovered as a solution of the inverse problem. The rate of change of the average aggregate size was greater at the intermediate rate tested suggesting a trade-off between increased collisions and agitation-induced shear. Results from forward simulation with obtained aggregation kernels were in agreement with transient aggregate size data from experiments. We conclude that the framework presented here can complement mechanistic studies offering insights into relevant stem cell clustering processes. More importantly from a process development standpoint, this strategy can be employed in the design and control of bioreactors for the generation of stem cell derivatives for drug screening, tissue engineering and regenerative medicine. PMID:26036699

  18. Inverse problem analysis of pluripotent stem cell aggregation dynamics in stirred-suspension cultures.

    PubMed

    Rostami, Mahboubeh Rahmati; Wu, Jincheng; Tzanakakis, Emmanuel S

    2015-08-20

    The cultivation of stem cells as aggregates in scalable bioreactor cultures is an appealing modality for the large-scale manufacturing of stem cell products. Aggregation phenomena are central to such bioprocesses affecting the viability, proliferation and differentiation trajectory of stem cells but a quantitative framework is currently lacking. A population balance equation (PBE) model was used to describe the temporal evolution of the embryonic stem cell (ESC) cluster size distribution by considering collision-induced aggregation and cell proliferation in a stirred-suspension vessel. For ESC cultures at different agitation rates, the aggregation kernel representing the aggregation dynamics was successfully recovered as a solution of the inverse problem. The rate of change of the average aggregate size was greater at the intermediate rate tested suggesting a trade-off between increased collisions and agitation-induced shear. Results from forward simulation with obtained aggregation kernels were in agreement with transient aggregate size data from experiments. We conclude that the framework presented here can complement mechanistic studies offering insights into relevant stem cell clustering processes. More importantly from a process development standpoint, this strategy can be employed in the design and control of bioreactors for the generation of stem cell derivatives for drug screening, tissue engineering and regenerative medicine.

  19. Two dimensional barcode-inspired automatic analysis for arrayed microfluidic immunoassays

    PubMed Central

    Zhang, Yi; Qiao, Lingbo; Ren, Yunke; Wang, Xuwei; Gao, Ming; Tang, Yunfang; Jeff Xi, Jianzhong; Fu, Tzung-May; Jiang, Xingyu

    2013-01-01

    The usability of many high-throughput lab-on-a-chip devices in point-of-care applications is currently limited by the manual data acquisition and analysis process, which are labor intensive and time consuming. Based on our original design in the biochemical reactions, we proposed here a universal approach to perform automatic, fast, and robust analysis for high-throughput array-based microfluidic immunoassays. Inspired by two-dimensional (2D) barcodes, we incorporated asymmetric function patterns into a microfluidic array. These function patterns provide quantitative information on the characteristic dimensions of the microfluidic array, as well as mark its orientation and origin of coordinates. We used a computer program to perform automatic analysis for a high-throughput antigen/antibody interaction experiment in 10 s, which was more than 500 times faster than conventional manual processing. Our method is broadly applicable to many other microchannel-based immunoassays. PMID:24404030

  20. Two dimensional barcode-inspired automatic analysis for arrayed microfluidic immunoassays.

    PubMed

    Zhang, Yi; Qiao, Lingbo; Ren, Yunke; Wang, Xuwei; Gao, Ming; Tang, Yunfang; Jeff Xi, Jianzhong; Fu, Tzung-May; Jiang, Xingyu

    2013-01-01

    The usability of many high-throughput lab-on-a-chip devices in point-of-care applications is currently limited by the manual data acquisition and analysis process, which are labor intensive and time consuming. Based on our original design in the biochemical reactions, we proposed here a universal approach to perform automatic, fast, and robust analysis for high-throughput array-based microfluidic immunoassays. Inspired by two-dimensional (2D) barcodes, we incorporated asymmetric function patterns into a microfluidic array. These function patterns provide quantitative information on the characteristic dimensions of the microfluidic array, as well as mark its orientation and origin of coordinates. We used a computer program to perform automatic analysis for a high-throughput antigen/antibody interaction experiment in 10 s, which was more than 500 times faster than conventional manual processing. Our method is broadly applicable to many other microchannel-based immunoassays.

  1. ExonMiner: Web service for analysis of GeneChip Exon array data

    PubMed Central

    Numata, Kazuyuki; Yoshida, Ryo; Nagasaki, Masao; Saito, Ayumu; Imoto, Seiya; Miyano, Satoru

    2008-01-01

    Background Some splicing isoform-specific transcriptional regulations are related to disease. Therefore, detection of disease specific splice variations is the first step for finding disease specific transcriptional regulations. Affymetrix Human Exon 1.0 ST Array can measure exon-level expression profiles that are suitable to find differentially expressed exons in genome-wide scale. However, exon array produces massive datasets that are more than we can handle and analyze on personal computer. Results We have developed ExonMiner that is the first all-in-one web service for analysis of exon array data to detect transcripts that have significantly different splicing patterns in two cells, e.g. normal and cancer cells. ExonMiner can perform the following analyses: (1) data normalization, (2) statistical analysis based on two-way ANOVA, (3) finding transcripts with significantly different splice patterns, (4) efficient visualization based on heatmaps and barplots, and (5) meta-analysis to detect exon level biomarkers. We implemented ExonMiner on a supercomputer system in order to perform genome-wide analysis for more than 300,000 transcripts in exon array data, which has the potential to reveal the aberrant splice variations in cancer cells as exon level biomarkers. Conclusion ExonMiner is well suited for analysis of exon array data and does not require any installation of software except for internet browsers. What all users need to do is to access the ExonMiner URL . Users can analyze full dataset of exon array data within hours by high-level statistical analysis with sound theoretical basis that finds aberrant splice variants as biomarkers. PMID:19036125

  2. Computational analysis of vertical axis wind turbine arrays

    NASA Astrophysics Data System (ADS)

    Bremseth, J.; Duraisamy, K.

    2016-03-01

    Canonical problems involving single, pairs, and arrays of vertical axis wind turbines (VAWTs) are investigated numerically with the objective of understanding the underlying flow structures and their implications on energy production. Experimental studies by Dabiri (J Renew Sustain Energy 3, 2011) suggest that VAWTs demand less stringent spacing requirements than their horizontal axis counterparts and additional benefits may be obtained by optimizing the placement and rotational direction of VAWTs. The flowfield of pairs of co-/counter-rotating VAWTs shows some similarities with pairs of cylinders in terms of wake structure and vortex shedding. When multiple VAWTs are placed in a column, the extent of the wake is seen to spread further downstream, irrespective of the direction of rotation of individual turbines. However, the aerodynamic interference between turbines gives rise to regions of excess momentum between the turbines which lead to significant power augmentations. Studies of VAWTs arranged in multiple columns show that the downstream columns can actually be more efficient than the leading column, a proposition that could lead to radical improvements in wind farm productivity.

  3. Computational analysis of vertical axis wind turbine arrays

    NASA Astrophysics Data System (ADS)

    Bremseth, J.; Duraisamy, K.

    2016-10-01

    Canonical problems involving single, pairs, and arrays of vertical axis wind turbines (VAWTs) are investigated numerically with the objective of understanding the underlying flow structures and their implications on energy production. Experimental studies by Dabiri (J Renew Sustain Energy 3, 2011) suggest that VAWTs demand less stringent spacing requirements than their horizontal axis counterparts and additional benefits may be obtained by optimizing the placement and rotational direction of VAWTs. The flowfield of pairs of co-/counter-rotating VAWTs shows some similarities with pairs of cylinders in terms of wake structure and vortex shedding. When multiple VAWTs are placed in a column, the extent of the wake is seen to spread further downstream, irrespective of the direction of rotation of individual turbines. However, the aerodynamic interference between turbines gives rise to regions of excess momentum between the turbines which lead to significant power augmentations. Studies of VAWTs arranged in multiple columns show that the downstream columns can actually be more efficient than the leading column, a proposition that could lead to radical improvements in wind farm productivity.

  4. AVES: A high performance computer cluster array for the INTEGRAL satellite scientific data analysis

    NASA Astrophysics Data System (ADS)

    Federici, Memmo; Martino, Bruno Luigi; Ubertini, Pietro

    2012-07-01

    In this paper we describe a new computing system array, designed, built and now used at the Space Astrophysics and Planetary Institute (IAPS) in Rome, Italy, for the INTEGRAL Space Observatory scientific data analysis. This new system has become necessary in order to reduce the processing time of the INTEGRAL data accumulated during the more than 9 years of in-orbit operation. In order to fulfill the scientific data analysis requirements with a moderately limited investment the starting approach has been to use a `cluster' array of commercial quad-CPU computers, featuring the extremely large scientific and calibration data archive on line.

  5. Addictions Biology: Haplotype-Based Analysis for 130 Candidate Genes on a Single Array

    PubMed Central

    Hodgkinson, Colin A.; Yuan, Qiaoping; Xu, Ke; Shen, Pei-Hong; Heinz, Elizabeth; Lobos, Elizabeth A.; Binder, Elizabeth B.; Cubells, Joe; Ehlers, Cindy L.; Gelernter, Joel; Mann, John; Riley, Brien; Roy, Alec; Tabakoff, Boris; Todd, Richard D.; Zhou, Zhifeng; Goldman, David

    2008-01-01

    Aims: To develop a panel of markers able to extract full haplotype information for candidate genes in alcoholism, other addictions and disorders of mood and anxiety. Methods: A total of 130 genes were haplotype tagged and genotyped in 7 case/control populations and 51 reference populations using Illumina GoldenGate SNP genotyping technology, determining haplotype coverage. We also constructed and determined the efficacy of a panel of 186 ancestry informative markers. Results: An average of 1465 loci were genotyped at an average completion rate of 91.3%, with an average call rate of 98.3% and replication rate of 99.7%. Completion and call rates were lowered by the performance of two datasets, highlighting the importance of the DNA quality in high throughput assays. A comparison of haplotypes captured by the Addictions Array tagging SNPs and commercially available whole-genome arrays from Illumina and Affymetrix shows comparable performance of the tag SNPs to the best whole-genome array in all populations for which data are available. Conclusions: Arrays of haplotype-tagged candidate genes, such as this addictions-focused array, represent a cost-effective approach to generate high-quality SNP genotyping data useful for the haplotype-based analysis of panels of genes such as these 130 genes of interest to alcohol and addictions researchers. The inclusion of the 186 ancestry informative markers allows for the detection and correction for admixture and further enhances the utility of the array. PMID:18477577

  6. Multiplexed gold nanorod array biochip for multi-sample analysis.

    PubMed

    Wang, Yanyan; Tang, Liang

    2015-05-15

    Optical transduction of biological bindings based on localized surface plasmon resonance (LSPR) of gold nanorods (GNRs) is attractive for label-free biosensing. The aspect ratio (AR) dependence of LSPR band maxima inherently provides an ideal multiplex mechanism. GNRs of selected sizes can be combined to ensure distinct plasmon peaks in absorption spectrum. Monitoring the spectral shift at the dedicated peaks allows for simultaneous detection of the specific analyte. Here, we first transformed the GNR's multiplexed biosensing capability to a robust chip-based format. Specifically, nanorods of AR 2.6 and 4.5 were assembled onto thiol-terminated substrates, followed by functionalization of respective antibodies to construct a GNR multiplex biochip. As a model system, concentrations of human IgG and rabbit IgG were simultaneously measured by correlating red-shifts at distinct resonance peaks caused by specific target binding. The calibration curves exhibited linear relationship between the spectral shift and analyte amount. The sensing performance in multi-analyte mode correlated nicely with those for single analyte detection with minimal cross-reactivity. Moreover, mixed GNRs can be deposited in controllable array pattern on the glass chip to analyze numerous samples at the same time. Each GNRs dot functioned independently as a multiplexed plamonic sensor. Coupled with microplate reader, this GNR nanoarray chip can potentially result in large scale assay of samples concurrently while for each sample, a multi-analyte detection simultaneously if desired. The concept shown in this work is simple and versatile that will definitely be a new paradigm in high-throughput protein biochip development in the era of nano-biosensing. PMID:25127486

  7. Simplified seawater alkalinity analysis: Use of linear array spectrometers

    NASA Astrophysics Data System (ADS)

    Yao, Wensheng; Byrne, Robert H.

    1998-08-01

    Modified spectrophotometric procedures are presented for the determination of seawater total alkalinity using rapid scan linear array spectrometers. Continuous monitoring of solution pH allows titrations to be terminated at relatively high pH, whereby excess acid terms are very small. Excess acid concentrations are quantified using the sulfonephthalein indicators, bromocresol green and bromocresol purple. The outlined spectrophotometric procedures require no thermal equilibration of samples. Using bromocresol green, solution pH T ([H +] T in moles per kg of solution) is given as: pHT=4.2699+0.002578(35- S)+ log((R(25)-0.00131)/(2.3148-0.1299 R(25))) - log(1-0.001005S) and R(25)= R( t){1+0.00909(25- t)}, where 29⩽S⩽37, 13° C⩽t⩽32° C, and R( t) is the absorbance ratio ( A616/ A444) at temperature t and salinity S. Using bromocresol purple, the solution pH T is given as pH T=5.8182+0.00129(35- S)+log(( R(25)-0.00381)/(2.8729-0.05104 R(25))) and R(25)= R( t){1+0.01869(25- t)}, where 29⩽S⩽37, 13° C⩽t⩽32° C, and R( t)= A589/ A432. Alkalinity measurements using bromocresol purple had a precision on the order of 0.3 μmol kg -1 and were within 0.3-0.9 μmol kg -1 of the alkalinities of certified seawater reference materials.

  8. Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports.

    PubMed Central

    Guo, Z; Guilfoyle, R A; Thiel, A J; Wang, R; Smith, L M

    1994-01-01

    A simple and rapid method for the analysis of genetic polymorphisms has been developed using allele-specific oligonucleotide arrays bound to glass supports. Allele-specific oligonucleotides are covalently immobilized on glass slides in arrays of 3 mm spots. Genomic DNA is amplified by PCR using one fluorescently tagged primer oligonucleotide and one biotinylated primer oligonucleotide. The two complementary DNA strands are separated, the fluorescently tagged strand is hybridized to the support-bound oligonucleotide array, and the hybridization pattern is detected by fluorescence scanning. Multiple polymorphisms present in the PCR product may be detected in parallel. The effect of spacer length, surface density and hybridization conditions were evaluated, as was the relative efficacy of hybridization with single or double-stranded PCR products. The utility of the method was demonstrated in the parallel analysis of 5 point mutations from exon 4 of the human tyrosinase gene. Images PMID:7816638

  9. A new soft x-ray pulse height analysis array in the HL-2A tokamak

    SciTech Connect

    Zhang, Y. P.; Liu Yi; Yang, J. W.; Song, X. Y.; Liao, M.; Li, X.; Yuan, G. L.; Yang, Q. W.; Duan, X. R.; Pan, C. H.

    2009-12-15

    A new soft x-ray pulse height analysis (PHA) array including nine independent subsystems, on basis of a nonconventional software multichannel analysis system and a silicon drift detector (SDD) linear array consisting of nine high performance SDD detectors, has been developed in the HL-2A tokamak. The use of SDD has greatly improved the measurement accuracy and the spatiotemporal resolutions of the soft x-ray PHA system. Since the ratio of peak to background counts obtained from the SDD PHA system is very high, p/b{>=}3000, the soft x-ray spectra measured by the SDD PHA system can approximatively be regarded as electron velocity distribution. The electron velocity distribution can be well derived in the pure ohmic and auxiliary heating discharges. The performance of the new soft x-ray PHA array and the first experimental results with some discussions are presented.

  10. Vertical nanowire arrays as a versatile platform for protein detection and analysis

    NASA Astrophysics Data System (ADS)

    Rostgaard, Katrine R.; Frederiksen, Rune S.; Liu, Yi-Chi C.; Berthing, Trine; Madsen, Morten H.; Holm, Johannes; Nygård, Jesper; Martinez, Karen L.

    2013-10-01

    Protein microarrays are valuable tools for protein assays. Reducing spot sizes from micro- to nano-scale facilitates miniaturization of platforms and consequently decreased material consumption, but faces inherent challenges in the reduction of fluorescent signals and compatibility with complex solutions. Here we show that vertical arrays of nanowires (NWs) can overcome several bottlenecks of using nanoarrays for extraction and analysis of proteins. The high aspect ratio of the NWs results in a large surface area available for protein immobilization and renders passivation of the surface between the NWs unnecessary. Fluorescence detection of proteins allows quantitative measurements and spatial resolution, enabling us to track individual NWs through several analytical steps, thereby allowing multiplexed detection of different proteins immobilized on different regions of the NW array. We use NW arrays for on-chip extraction, detection and functional analysis of proteins on a nano-scale platform that holds great promise for performing protein analysis on minute amounts of material. The demonstration made here on highly ordered arrays of indium arsenide (InAs) NWs is generic and can be extended to many high aspect ratio nanostructures.Protein microarrays are valuable tools for protein assays. Reducing spot sizes from micro- to nano-scale facilitates miniaturization of platforms and consequently decreased material consumption, but faces inherent challenges in the reduction of fluorescent signals and compatibility with complex solutions. Here we show that vertical arrays of nanowires (NWs) can overcome several bottlenecks of using nanoarrays for extraction and analysis of proteins. The high aspect ratio of the NWs results in a large surface area available for protein immobilization and renders passivation of the surface between the NWs unnecessary. Fluorescence detection of proteins allows quantitative measurements and spatial resolution, enabling us to track individual

  11. GENE ARRAY ANALYSIS OF THE VENTRAL PROSTATE IN RATS EXPOSED TO EITHER VINCLOZOLIN OR PROCYMIDONE

    EPA Science Inventory

    GENE ARRAY ANALYSIS OF THE VENTRAL PROSTATE IN RATS EXPOSED TO EITHER VINCLOZOLIN OR PROCYMIDONE. MB Rosen, VS Wilson, JE Schmid, and LE Gray Jr. US EPA, ORD, NHEERL, RTP, NC.

    Vinclozolin (Vi) and procymidone (Pr) are antiandrogenic fungicides. While changes in gene expr...

  12. Young's modulus and SEM analysis of leg bones exposed to simulated microgravity by hind limb suspension (HLS)

    SciTech Connect

    Patel, Niravkumar D.; Mehta, Rahul; Ali, Nawab; Soulsby, Michael; Chowdhury, Parimal

    2013-04-19

    The aim of this study was to determine composition of the leg bone tissue of rats that were exposed to simulated microgravity by Hind-Limb Suspension (HLS) by tail for one week. The leg bones were cross sectioned, cleaned of soft tissues, dried and sputter coated, and then placed horizontally on the stage of a Scanning Electron Microscope (SEM) for analysis. Interaction of a 17.5 keV electron beam, incident from the vertical direction on the sample, generated images using two detectors. X-rays emitted from the sample during electron bombardment were measured with an Energy Dispersive Spectroscopy (EDS) feature of SEM using a liquid-nitrogen cooled Si(Li) detector with a resolution of 144 eV at 5.9 keV ({sub 25}Mn K{sub {alpha}} x-ray). K{sub {alpha}}- x-rays from carbon, oxygen, phosphorus and calcium formed the major peaks in the spectrum. Relative percentages of these elements were determined using a software that could also correct for ZAF factors namely Z(atomic number), A(X-ray absorption) and F(characteristic fluorescence). The x-rays from the control groups and from the experimental (HLS) groups were analyzed on well-defined parts (femur, tibia and knee) of the leg bone. The SEM analysis shows that there are definite changes in the hydroxyl or phosphate group of the main component of the bone structure, hydroxyapatite [Ca{sub 10}(PO{sub 4}){sub 6}(OH){sub 2}], due to hind limb suspension. In a separate experiment, entire leg bones (both from HLS and control rats) were subjected to mechanical stress by mean of a variable force. The stress vs. strain graph was fitted with linear and polynomial function, and the parameters reflecting the mechanical strength of the bone, under increasing stress, were calculated. From the slope of the linear part of the graph the Young's modulus for HLS bones were calculated and found to be 2.49 times smaller than those for control bones.

  13. Young's modulus and SEM analysis of leg bones exposed to simulated microgravity by hind limb suspension (HLS)

    NASA Astrophysics Data System (ADS)

    Patel, Niravkumar D.; Mehta, Rahul; Ali, Nawab; Soulsby, Michael; Chowdhury, Parimal

    2013-04-01

    The aim of this study was to determine composition of the leg bone tissue of rats that were exposed to simulated microgravity by Hind-Limb Suspension (HLS) by tail for one week. The leg bones were cross sectioned, cleaned of soft tissues, dried and sputter coated, and then placed horizontally on the stage of a Scanning Electron Microscope (SEM) for analysis. Interaction of a 17.5 keV electron beam, incident from the vertical direction on the sample, generated images using two detectors. X-rays emitted from the sample during electron bombardment were measured with an Energy Dispersive Spectroscopy (EDS) feature of SEM using a liquid-nitrogen cooled Si(Li) detector with a resolution of 144 eV at 5.9 keV (25Mn Kα x-ray). Kα- x-rays from carbon, oxygen, phosphorus and calcium formed the major peaks in the spectrum. Relative percentages of these elements were determined using a software that could also correct for ZAF factors namely Z(atomic number), A(X-ray absorption) and F(characteristic fluorescence). The x-rays from the control groups and from the experimental (HLS) groups were analyzed on well-defined parts (femur, tibia and knee) of the leg bone. The SEM analysis shows that there are definite changes in the hydroxyl or phosphate group of the main component of the bone structure, hydroxyapatite [Ca10(PO4)6(OH)2], due to hind limb suspension. In a separate experiment, entire leg bones (both from HLS and control rats) were subjected to mechanical stress by mean of a variable force. The stress vs. strain graph was fitted with linear and polynomial function, and the parameters reflecting the mechanical strength of the bone, under increasing stress, were calculated. From the slope of the linear part of the graph the Young's modulus for HLS bones were calculated and found to be 2.49 times smaller than those for control bones.

  14. The organization of circuit analysis on array architectures

    NASA Astrophysics Data System (ADS)

    Kees, H. G. M.

    The organization of a circuit analysis program on a computer configuration with additional hardware working in parallel to produce more output is discussed. The structure of the program is addressed, and a parallel algorithm is derived. A speedup analysis is presented, and a special purpose computer and its organization are described. The job and the parallel computer are combined into the scheduling model which uses software to optimally match the resources of the special purpose computer with resource needs. The task of solving the set of linear equations resulting from the discretized and linearized circuit equations is decomposed into tasks. Scheduling is demonstrated for the parallel solution of the set of linear equations, and some results of the decomposition and scheduling of the solution job for the set of linear equations are presented.

  15. Rawcopy: Improved copy number analysis with Affymetrix arrays

    PubMed Central

    Mayrhofer, Markus; Viklund, Björn; Isaksson, Anders

    2016-01-01

    Microarray data is subject to noise and systematic variation that negatively affects the resolution of copy number analysis. We describe Rawcopy, an R package for processing of Affymetrix CytoScan HD, CytoScan 750k and SNP 6.0 microarray raw intensities (CEL files). Noise characteristics of a large number of reference samples are used to estimate log ratio and B-allele frequency for total and allele-specific copy number analysis. Rawcopy achieves better signal-to-noise ratio and higher proportion of validated alterations than commonly used free and proprietary alternatives. In addition, Rawcopy visualizes each microarray sample for assessment of technical quality, patient identity and genome-wide absolute copy number states. Software and instructions are available at http://rawcopy.org. PMID:27796336

  16. Finite-difference time-domain analysis of light propagation in cholesteric liquid crystalline droplet array

    NASA Astrophysics Data System (ADS)

    Yamamoto, Kaho; Iwai, Yosuke; Uchida, Yoshiaki; Nishiyama, Norikazu

    2016-08-01

    We numerically analyzed the light propagation in cholesteric liquid crystalline (CLC) droplet array by the finite-difference time-domain (FDTD) method. The FDTD method successfully reproduced the experimental light path observed in the complicated photonic structure of the CLC droplet array more accurately than the analysis of CLC droplets by geometric optics with Bragg condition, and this method help us understand the polarization of the propagating light waves. The FDTD method holds great promise for the design of various photonic devices composed of curved photonic materials like CLC droplets and microcapsules.

  17. An analysis of three new infrasound arrays around Kīlauea Volcano

    USGS Publications Warehouse

    Thelen, Weston A.; Cooper, Jennifer

    2015-01-01

    A network of three new infrasound station arrays was installed around Kīlauea Volcano between July 2012 and September 2012, and a preliminary analysis of open-vent monitoring has been completed by Hawaiian Volcano Observatory (HVO). Infrasound is an emerging monitoring method in volcanology that detects perturbations in atmospheric pressure at frequencies below 20 Hz, which can result from volcanic events that are not always observed optically or thermally. Each array has the capability to detect various infrasound events as small as 0.05 Pa as measured at the array site. The infrasound monitoring network capabilities are demonstrated through case studies of rockfalls, pit collapses, and rise-fall cycles at Halema'uma'u Crater and Pu'u 'Ōʻō.

  18. Potential of minicomputer/array-processor system for nonlinear finite-element analysis

    NASA Technical Reports Server (NTRS)

    Strohkorb, G. A.; Noor, A. K.

    1983-01-01

    The potential of using a minicomputer/array-processor system for the efficient solution of large-scale, nonlinear, finite-element problems is studied. A Prime 750 is used as the host computer, and a software simulator residing on the Prime is employed to assess the performance of the Floating Point Systems AP-120B array processor. Major hardware characteristics of the system such as virtual memory and parallel and pipeline processing are reviewed, and the interplay between various hardware components is examined. Effective use of the minicomputer/array-processor system for nonlinear analysis requires the following: (1) proper selection of the computational procedure and the capability to vectorize the numerical algorithms; (2) reduction of input-output operations; and (3) overlapping host and array-processor operations. A detailed discussion is given of techniques to accomplish each of these tasks. Two benchmark problems with 1715 and 3230 degrees of freedom, respectively, are selected to measure the anticipated gain in speed obtained by using the proposed algorithms on the array processor.

  19. Arrayed lipid bilayer chambers allow single-molecule analysis of membrane transporter activity.

    PubMed

    Watanabe, Rikiya; Soga, Naoki; Fujita, Daishi; Tabata, Kazuhito V; Yamauchi, Lisa; Hyeon Kim, Soo; Asanuma, Daisuke; Kamiya, Mako; Urano, Yasuteru; Suga, Hiroaki; Noji, Hiroyuki

    2014-07-24

    Nano- to micron-size reaction chamber arrays (femtolitre chamber arrays) have facilitated the development of sensitive and quantitative biological assays, such as single-molecule enzymatic assays, digital PCR and digital ELISA. However, the versatility of femtolitre chamber arrays is limited to reactions that occur in aqueous solutions. Here we report an arrayed lipid bilayer chamber system (ALBiC) that contains sub-million femtolitre chambers, each sealed with a stable 4-μm-diameter lipid bilayer membrane. When reconstituted with a limiting amount of the membrane transporter proteins α-hemolysin or F0F1-ATP synthase, the chambers within the ALBiC exhibit stochastic and quantized transporting activities. This demonstrates that the single-molecule analysis of passive and active membrane transport is achievable with the ALBiC system. This new platform broadens the versatility of femtolitre chamber arrays and paves the way for novel applications aimed at furthering our mechanistic understanding of membrane proteins' function.

  20. Arrayed lipid bilayer chambers allow single-molecule analysis of membrane transporter activity

    PubMed Central

    Watanabe, Rikiya; Soga, Naoki; Fujita, Daishi; Tabata, Kazuhito V.; Yamauchi, Lisa; Hyeon Kim, Soo; Asanuma, Daisuke; Kamiya, Mako; Urano, Yasuteru; Suga, Hiroaki; Noji, Hiroyuki

    2014-01-01

    Nano- to micron-size reaction chamber arrays (femtolitre chamber arrays) have facilitated the development of sensitive and quantitative biological assays, such as single-molecule enzymatic assays, digital PCR and digital ELISA. However, the versatility of femtolitre chamber arrays is limited to reactions that occur in aqueous solutions. Here we report an arrayed lipid bilayer chamber system (ALBiC) that contains sub-million femtolitre chambers, each sealed with a stable 4-μm-diameter lipid bilayer membrane. When reconstituted with a limiting amount of the membrane transporter proteins α-hemolysin or F0F1-ATP synthase, the chambers within the ALBiC exhibit stochastic and quantized transporting activities. This demonstrates that the single-molecule analysis of passive and active membrane transport is achievable with the ALBiC system. This new platform broadens the versatility of femtolitre chamber arrays and paves the way for novel applications aimed at furthering our mechanistic understanding of membrane proteins’ function. PMID:25058452

  1. An integrated analysis-synthesis array system for spatial sound fields.

    PubMed

    Bai, Mingsian R; Hua, Yi-Hsin; Kuo, Chia-Hao; Hsieh, Yu-Hao

    2015-03-01

    An integrated recording and reproduction array system for spatial audio is presented within a generic framework akin to the analysis-synthesis filterbanks in discrete time signal processing. In the analysis stage, a microphone array "encodes" the sound field by using the plane-wave decomposition. Direction of arrival of plane-wave components that comprise the sound field of interest are estimated by multiple signal classification. Next, the source signals are extracted by using a deconvolution procedure. In the synthesis stage, a loudspeaker array "decodes" the sound field by reconstructing the plane-wave components obtained in the analysis stage. This synthesis stage is carried out by pressure matching in the interior domain of the loudspeaker array. The deconvolution problem is solved by truncated singular value decomposition or convex optimization algorithms. For high-frequency reproduction that suffers from the spatial aliasing problem, vector panning is utilized. Listening tests are undertaken to evaluate the deconvolution method, vector panning, and a hybrid approach that combines both methods to cover frequency ranges below and above the spatial aliasing frequency. Localization and timbral attributes are considered in the subjective evaluation. The results show that the hybrid approach performs the best in overall preference. In addition, there is a trade-off between reproduction performance and the external radiation.

  2. An integrated analysis-synthesis array system for spatial sound fields.

    PubMed

    Bai, Mingsian R; Hua, Yi-Hsin; Kuo, Chia-Hao; Hsieh, Yu-Hao

    2015-03-01

    An integrated recording and reproduction array system for spatial audio is presented within a generic framework akin to the analysis-synthesis filterbanks in discrete time signal processing. In the analysis stage, a microphone array "encodes" the sound field by using the plane-wave decomposition. Direction of arrival of plane-wave components that comprise the sound field of interest are estimated by multiple signal classification. Next, the source signals are extracted by using a deconvolution procedure. In the synthesis stage, a loudspeaker array "decodes" the sound field by reconstructing the plane-wave components obtained in the analysis stage. This synthesis stage is carried out by pressure matching in the interior domain of the loudspeaker array. The deconvolution problem is solved by truncated singular value decomposition or convex optimization algorithms. For high-frequency reproduction that suffers from the spatial aliasing problem, vector panning is utilized. Listening tests are undertaken to evaluate the deconvolution method, vector panning, and a hybrid approach that combines both methods to cover frequency ranges below and above the spatial aliasing frequency. Localization and timbral attributes are considered in the subjective evaluation. The results show that the hybrid approach performs the best in overall preference. In addition, there is a trade-off between reproduction performance and the external radiation. PMID:25786949

  3. Flux and reflux: metabolite reflux in plant suspension cells and its implications for isotope-assisted metabolic flux analysis.

    PubMed

    Nargund, Shilpa; Misra, Ashish; Zhang, Xiaofeng; Coleman, Gary D; Sriram, Ganesh

    2014-06-01

    Isotope-assisted metabolic flux analysis (MFA) is a powerful methodology to quantify intracellular fluxes via isotope labeling experiments (ILEs). In batch cultures, which are often convenient, inexpensive or inevitable especially for eukaryotic systems, MFA is complicated by the presence of the initially present biomass. This unlabeled biomass may either mix with the newly synthesized labeled biomass or reflux into the metabolic network, thus masking the true labeling patterns in the newly synthesized biomass. Here, we report a detailed investigation of such metabolite reflux in cell suspensions of the tree poplar. In ILEs supplying 28% or 98% U-(13)C glucose as the sole organic carbon source, biomass components exhibited lower (13)C enrichments than the supplied glucose as well as anomalous isotopomers not explainable by simple mixing of the initial and newly synthesized biomass. These anomalous labeling patterns were most prominent in a 98% U-(13)C glucose ILE. By comparing the performance of light- and dark-grown cells as well as by analyzing the isotope labeling patterns in aspartic and glutamic acids, we eliminated photosynthetic or anaplerotic fixation of extracellular (12)CO2 as explanations for the anomalous labeling patterns. We further investigated four different metabolic models for interpreting the labeling patterns and evaluating fluxes: (i) a carbon source (glucose) dilution model, (ii) an isotopomer correction model with uniform dilution for all amino acids, (iii) an isotopomer correction model with variable dilution for different amino acids, and (iv) a comprehensive metabolite reflux model. Of these, the metabolite reflux model provided a substantially better fit for the observed labeling patterns (sum of squared residues: 538) than the other three models whose sum of squared residues were (i) 4626, (ii) 4983, and (iii) 1748, respectively. We compared fluxes determined using the metabolite reflux model to those determined using an independent

  4. Spherical harmonic analysis of the sound radiation from omnidirectional loudspeaker arrays

    NASA Astrophysics Data System (ADS)

    Pasqual, A. M.

    2014-09-01

    Omnidirectional sound sources are widely used in room acoustics. These devices are made up of loudspeakers mounted on a spherical or polyhedral cabinet, where the dodecahedral shape prevails. Although such electroacoustic sources have been made readily available to acousticians by many manufacturers, an in-depth investigation of their vibroacoustic behavior has not been provided yet. In order to fulfill this lack, this paper presents a theoretical study of the sound radiation from omnidirectional loudspeaker arrays, which is carried out by using a mathematical model based on the spherical harmonic analysis. Eight different loudspeaker arrangements on the sphere are considered: the well-known five Platonic solid layouts and three extremal system layouts. The latter possess useful properties for spherical loudspeaker arrays used as directivity controlled sound sources, so that these layouts are included here in order to investigate whether or not they could be of interest as omnidirectional sources as well. It is shown through a comparative analysis that the dodecahedral array leads to the lowest error in producing an omnidirectional sound field and to the highest acoustic power, which corroborates the prevalence of such a layout. In addition, if a source with less than 12 loudspeakers is required, it is shown that tetrahedra or hexahedra can be used alternatively, whereas the extremal system layouts are not interesting choices for omnidirectional loudspeaker arrays.

  5. Zarya Energy Balance Analysis: The Effect of Spacecraft Shadowing on Solar Array Performance

    NASA Technical Reports Server (NTRS)

    Hoffman, David J.; Kolosov, Vladimir

    1999-01-01

    The first element of the International Space Station (ISS). Zarya, was funded by NASA and built by the Russian aerospace company Khrunichev State Research and Production Space Center (KhSC). NASA Glenn Research Center (GRC) and KhSC collaborated in performing analytical predictions of the on-orbit electrical performance of Zarya's solar arrays. GRC assessed the pointing characteristics of and shadow patterns on Zarya's solar arrays to determine the average solar energy incident on the arrays. KHSC used the incident energy results to determine Zarya's electrical power generation capability and orbit-average power balance. The power balance analysis was performed over a range of solar beta angles and vehicle operational conditions. This analysis enabled identification of problems that could impact the power balance for specific flights during ISS assembly and was also used as the primary means of verifying that Zarya complied with electrical power requirements. Analytical results are presented for select stages in the ISS assembly sequence along with a discussion of the impact of shadowing on the electrical performance of Zarya's solar arrays.

  6. Phenomic Assessment of Genetic Buffering by Kinetic Analysis of Cell Arrays

    PubMed Central

    Rodgers, John; Guo, Jingyu; Hartman, John L.

    2016-01-01

    Summary Quantitative high throughput cell array phenotyping (Q-HTCP) is applied to the genomic collection of yeast gene deletion mutants for systematic, comprehensive assessment of the contribution of genes and gene combinations to any phenotype of interest (phenomic analysis). Interacting gene networks influence every phenotype. Genetic buffering refers to how gene interaction networks stabilize or destabilize a phenotype. Like genomics, phenomics varies in its resolution with there being a tradeoff allocating a greater number of measurements per sample to enhance quantification of the phenotype vs. increasing the number of different samples by obtaining fewer measurement per sample. The Q-HTCP protocol we describe assesses 50,000–70,000 cultures per experiment by obtaining kinetic growth curves from time series imaging of agar cell arrays. This approach was developed for the yeast gene deletion strains, but it could be applied as well to other microbial mutant arrays grown on solid agar media. The methods we describe are for creation and maintenance of frozen stocks, liquid source array preparation, agar destination plate printing, image scanning, image analysis, curve fitting and evaluation of gene interaction. PMID:25213246

  7. Sensitivity- and effort-gain analysis: multilead ECG electrode array selection for activation time imaging.

    PubMed

    Hintermüller, Christoph; Seger, Michael; Pfeifer, Bernhard; Fischer, Gerald; Modre, Robert; Tilg, Bernhard

    2006-10-01

    Methods for noninvasive imaging of electric function of the heart might become clinical standard procedure the next years. Thus, the overall procedure has to meet clinical requirements as an easy and fast application. In this paper, we propose a new electrode array which improves the resolution of methods for activation time imaging considering clinical constraints such as easy to apply and compatibility with routine leads. For identifying the body-surface regions where the body surface potential (BSP) is most sensitive to changes in transmembrane potential (TMP), a virtual array method was used to compute local linear dependency (LLD) maps. The virtual array method computes a measure for the LLD in every point on the body surface. The most suitable number and position of the electrodes within the sensitive body surface regions was selected by constructing effort gain (EG) plots. Such a plot depicts the relative attainable rank of the leadfield matrix in relation to the increase in number of electrodes required to build the electrode array. The attainable rank itself was computed by a detector criterion. Such a criterion estimates the maximum number of source space eigenvectors not covered by noise when being mapped to the electrode space by the leadfield matrix and recorded by a detector. From the sensitivity maps, we found that the BSP is most sensitive to changes in TMP on the upper left frontal and dorsal body surface. These sensitive regions are covered best by an electrode array consisting of two L-shaped parts of approximately 30 cm x 30 cm and approximately 20 cm x 20 cm. The EG analysis revealed that the array meeting clinical requirements best and improving the resolution of activation time imaging consists of 125 electrodes with a regular horizontal and vertical spacing of 2-3 cm.

  8. Random-walk analysis of displacement statistics of particles in concentrated suspensions of hard spheres

    NASA Astrophysics Data System (ADS)

    van Megen, W.

    2006-01-01

    Mean-squared displacements (MSDs) of colloidal fluids of hard spheres are analyzed in terms of a random walk, an analysis which assumes that the process of structural relaxation among the particles can be described in terms of thermally driven memoryless encounters. For the colloidal fluid in thermodynamic equilibrium the magnitude of the stretching of the MSD is able to be reconciled by a bias in the walk. This description fails for the under-cooled colloidal fluid.

  9. Identification of the mechanism underlying a human chimera by SNP array analysis.

    PubMed

    Shin, So Youn; Yoo, Han-Wook; Lee, Beom Hee; Kim, Kun Suk; Seo, Eul-Ju

    2012-09-01

    Human chimerism resulting from the fusion of two different zygotes is a rare phenomenon. Two mechanisms of chimerism have been hypothesized: dispermic fertilization of an oocyte and its second polar body and dispermic fertilization of two identical gametes from parthenogenetic activation, and these can be identified and discriminated using DNA polymorphism. In the present study we describe a patient with chimerism presenting as a true hermaphrodite and applied single nucleotide polymorphism array analysis to demonstrate dispermic fertilization of two identical gametes from parthenogenetic activation as the underlying mechanism at the whole chromosome level. We suggest that application of genotyping array analysis to the diagnostic process in patients with disorders of sex development will help identify more human chimera patients and increase our understanding of the underlying mechanisms.

  10. ArrayNinja: An Open Source Platform for Unified Planning and Analysis of Microarray Experiments.

    PubMed

    Dickson, B M; Cornett, E M; Ramjan, Z; Rothbart, S B

    2016-01-01

    Microarray-based proteomic platforms have emerged as valuable tools for studying various aspects of protein function, particularly in the field of chromatin biochemistry. Microarray technology itself is largely unrestricted in regard to printable material and platform design, and efficient multidimensional optimization of assay parameters requires fluidity in the design and analysis of custom print layouts. This motivates the need for streamlined software infrastructure that facilitates the combined planning and analysis of custom microarray experiments. To this end, we have developed ArrayNinja as a portable, open source, and interactive application that unifies the planning and visualization of microarray experiments and provides maximum flexibility to end users. Array experiments can be planned, stored to a private database, and merged with the imaged results for a level of data interaction and centralization that is not currently attainable with available microarray informatics tools. PMID:27423857

  11. Breath analysis system for early detection of lung diseases based on multi-sensor array

    NASA Astrophysics Data System (ADS)

    Jeon, Jin-Young; Yu, Joon-Boo; Shin, Jeong-Suk; Byun, Hyung-Gi; Lim, Jeong-Ok

    2013-05-01

    Expiratory breath contains various VOCs(Volatile Organic Compounds) produced from the human. When a certain disease exists, the exhalation has specific VOCs which may be generated from diseases. Many researchers have been actively working to find different types of biomarkers which are characteristic for particular diseases. Research regarding the identification of specific diseases from exhalation is still in progress. The aim of this research is to implement early detection of lung disease such as lung cancer and COPD(Chronic Obstructive Pulmonary Disease), which was nominated on the 6th of domestic death rate in 2010, based on multi-sensor array system. The system has been used to acquire sampled expiratory gases data and PCA(Principle Component Analysis) technique was applied to analyze signals from multi-sensor array. Throughout the experimental trials, a clearly distinguishable difference between lung disease patients and healthy controls was found from the measurement and analysis of their respective expiratory gases.

  12. The Electrophysiological MEMS Device with Micro Channel Array for Cellular Network Analysis

    NASA Astrophysics Data System (ADS)

    Tonomura, Wataru; Kurashima, Toshiaki; Takayama, Yuzo; Moriguchi, Hiroyuki; Jimbo, Yasuhiko; Konishi, Satoshi

    This paper describes a new type of MCA (Micro Channel Array) for simultaneous multipoint measurement of cellular network. Presented MCA employing the measurement principles of the patch-clamp technique is designed for advanced neural network analysis which has been studied by co-authors using 64ch MEA (Micro Electrode Arrays) system. First of all, sucking and clamping of cells through channels of developed MCA is expected to improve electrophysiological signal detections. Electrophysiological sensing electrodes integrated around individual channels of MCA by using MEMS (Micro Electro Mechanical System) technologies are electrically isolated for simultaneous multipoint measurement. In this study, we tested the developed MCA using the non-cultured rat's cerebral cortical slice and the hippocampal neurons. We could measure the spontaneous action potential of the slice simultaneously at multiple points and culture the neurons on developed MCA. Herein, we describe the experimental results together with the design and fabrication of the electrophysiological MEMS device with MCA for cellular network analysis.

  13. An Introduction to MAMA (Meta-Analysis of MicroArray data) System.

    PubMed

    Zhang, Zhe; Fenstermacher, David

    2005-01-01

    Analyzing microarray data across multiple experiments has been proven advantageous. To support this kind of analysis, we are developing a software system called MAMA (Meta-Analysis of MicroArray data). MAMA utilizes a client-server architecture with a relational database on the server-side for the storage of microarray datasets collected from various resources. The client-side is an application running on the end user's computer that allows the user to manipulate microarray data and analytical results locally. MAMA implementation will integrate several analytical methods, including meta-analysis within an open-source framework offering other developers the flexibility to plug in additional statistical algorithms.

  14. Stability Analysis of Roughness Array Wake in a High-Speed Boundary Layer

    NASA Technical Reports Server (NTRS)

    Choudhari, Meelan; Li, Fei; Edwards, Jack

    2009-01-01

    Computations are performed to examine the effects of both an isolated and spanwise periodic array of trip elements on a high-speed laminar boundary layer, so as to identify the potential physical mechanisms underlying an earlier transition to turbulence as a result of the trip(s). In the context of a 0.333 scale model of the Hyper-X forebody configuration, the time accurate solution for an array of ramp shaped trips asymptotes to a stationary field at large times, indicating the likely absence of a strong absolute instability in the mildly separated flow due to the trips. A prominent feature of the wake flow behind the trip array corresponds to streamwise streaks that are further amplified in passing through the compression corner. Stability analysis of the streaks using a spatial, 2D eigenvalue approach reveals the potential for a strong convective instability that might explain the earlier onset of turbulence within the array wake. The dominant modes of streak instability are primarily sustained by the spanwise gradients associated with the streaks and lead to integrated logarithmic amplification factors (N factors) approaching 7 over the first ramp of the scaled Hyper-X forebody, and substantially higher over the second ramp. Additional computations are presented to shed further light on the effects of both trip geometry and the presence of a compression corner on the evolution of the streaks.

  15. EDITORIAL: Colloidal suspensions Colloidal suspensions

    NASA Astrophysics Data System (ADS)

    Petukhov, Andrei; Kegel, Willem; van Duijneveldt, Jeroen

    2011-05-01

    Special issue in honour of Henk Lekkerkerker's 65th birthday Professor Henk N W Lekkerkerker is a world-leading authority in the field of experimental and theoretical soft condensed matter. On the occasion of his 65th birthday in the summer of 2011, this special issue celebrates his many contributions to science. Henk Lekkerkerker obtained his undergraduate degree in chemistry at the University of Utrecht (1968) and moved to Calgary where he received his PhD in 1971. He moved to Brussels as a NATO fellow at the Université Libre de Bruxelles and was appointed to an assistant professorship (1974), an associate professorship (1977) and a full professorship (1980) in physical chemistry at the Vrije Universiteit Brussel. In 1985 he returned to The Netherlands to take up a professorship at the Van 't Hoff Laboratory, where he has been ever since. He has received a series of awards during his career, including the Onsager Medal (1999) of the University of Trondheim, the Bakhuys Roozeboom Gold Medal (2003) of the Royal Dutch Academy of Arts and Sciences (KNAW), the ECIS-Rhodia European Colloid and Interface Prize (2003), and the Liquid Matter Prize of the European Physical Society (2008). He was elected a member of KNAW in 1996, was awarded an Academy Chair position in 2005, and has held several visiting lectureships. Henk's work focuses on phase transitions in soft condensed matter, and he has made seminal contributions to both the theoretical and experimental aspects of this field. Here we highlight three major themes running through his work, and a few selected publications. So-called depletion interactions may lead to phase separation in colloid-polymer mixtures, and Henk realised that the partitioning of polymer needs to be taken into account to describe the phase behaviour correctly [1]. Colloidal suspensions can be used as model fluids, with the time- and length-scales involved leading to novel opportunities, notably the direct observation of capillary waves at a

  16. Analysis and design of coupled-oscillator arrays for microwave systems

    NASA Astrophysics Data System (ADS)

    Moussounda, Renaud

    The concept of synchronized nonlinear coupled oscillators is applied to microwave and antenna engineering for the analysis and design of wireless communication and sensing systems operating at the microwave and/or millimeter (mm)-wave frequencies. The significance of such approach is justified from the potential gain in efficiency, weight, cost and functionality although technical challenges stand in the way. Unlike typical phased array systems, which are currently used to construct such systems, coupled-oscillator systems present additional challenges that mainly arise from maintaining stability and synchronization as the the coupled nonlinear system is operated. Linear systems do not present such stability issues and are consequently faster since they do not rely on any gradual synchronization mechanism in order to function. However, at significantly higher frequencies in the quasi-optical domain, coupled-oscillator systems can make up for the speed difference and present significant efficiency advantages over typical phased array architectures. In addition, coupled nonlinear systems possess inherent analog properties that can be used for a multitude of functions. This dissertation advances the topic of coupled-oscillator arrays by 1) developing an alternative set of techniques for designing the oscillating unit cells called active integrated antennas (AIAs) at microwave or mm-wave frequencies, 2) developing a more accurate description of the dynamics of the array, 3) developing and implementing a new topology for a coupling network that is able to extend stability, 4) implementing a fully non-reciprocally coupled array able to produce large scan angle without loss of stability, 5) proposing an architecture based on a single phase-locked loop (PLL) and containing a self-calibration mechanism, and finally 6) implementing a phase-boosting mechanism using simple circuits to amplify the phase difference between adjacent radiating antennas in order to increase

  17. Large Angle Magnetic Suspension Test Fixture

    NASA Technical Reports Server (NTRS)

    Britcher, Colin P.; Huang, Jen-Kuang

    1997-01-01

    Progress in the areas of eddy current computations, modelling and analysis, design optimization methods, wind tunnel Magnetic Suspension and Balance Systems (MSBS), payload pointing and vibration isolation systems, and system identification is reported. Research accomplishments facilitated the demonstration of several new developments in the field of magnetic suspension technology.

  18. The Suspension School: An Alternative to Suspension.

    ERIC Educational Resources Information Center

    Kennedy, Robert L.; And Others

    A suspension school for secondary students, established in the 1977-78 school year in an Arkansas school district has developed specific program goals and procedures. Following a discussion of the school's origins, this paper describes operating procedures, philosophy, support system, and student reaction. Suspensions declined considerably through…

  19. EDITORIAL: Colloidal suspensions Colloidal suspensions

    NASA Astrophysics Data System (ADS)

    Petukhov, Andrei; Kegel, Willem; van Duijneveldt, Jeroen

    2011-05-01

    Special issue in honour of Henk Lekkerkerker's 65th birthday Professor Henk N W Lekkerkerker is a world-leading authority in the field of experimental and theoretical soft condensed matter. On the occasion of his 65th birthday in the summer of 2011, this special issue celebrates his many contributions to science. Henk Lekkerkerker obtained his undergraduate degree in chemistry at the University of Utrecht (1968) and moved to Calgary where he received his PhD in 1971. He moved to Brussels as a NATO fellow at the Université Libre de Bruxelles and was appointed to an assistant professorship (1974), an associate professorship (1977) and a full professorship (1980) in physical chemistry at the Vrije Universiteit Brussel. In 1985 he returned to The Netherlands to take up a professorship at the Van 't Hoff Laboratory, where he has been ever since. He has received a series of awards during his career, including the Onsager Medal (1999) of the University of Trondheim, the Bakhuys Roozeboom Gold Medal (2003) of the Royal Dutch Academy of Arts and Sciences (KNAW), the ECIS-Rhodia European Colloid and Interface Prize (2003), and the Liquid Matter Prize of the European Physical Society (2008). He was elected a member of KNAW in 1996, was awarded an Academy Chair position in 2005, and has held several visiting lectureships. Henk's work focuses on phase transitions in soft condensed matter, and he has made seminal contributions to both the theoretical and experimental aspects of this field. Here we highlight three major themes running through his work, and a few selected publications. So-called depletion interactions may lead to phase separation in colloid-polymer mixtures, and Henk realised that the partitioning of polymer needs to be taken into account to describe the phase behaviour correctly [1]. Colloidal suspensions can be used as model fluids, with the time- and length-scales involved leading to novel opportunities, notably the direct observation of capillary waves at a

  20. Beyond Behavior: Multilevel Analysis of the Influence of Sociodemographics and School Characteristics on Students' Risk of Suspension

    ERIC Educational Resources Information Center

    Sullivan, Amanda L.; Klingbeil, David A.; Van Norman, Ethan R.

    2013-01-01

    Minority disproportionality in school discipline outcomes continues to trouble practitioners and scholars. The purpose of this study was to examine the influence of sociodemographic characteristics and indicators of school policy enactment (e.g., retention rates, special education identification) on students' risk of suspension. The sample…

  1. Teleseismic P-wave polarization analysis at the Gräfenberg array

    NASA Astrophysics Data System (ADS)

    Cristiano, L.; Meier, T.; Krüger, F.; Keers, H.; Weidle, C.

    2016-09-01

    P-wave polarization at the Gräfenberg array (GRF) in southern Germany is analyzed in terms of azimuthal deviations and deviations in the vertical polarization using 20 years of broad band recordings. An automated procedure for estimating P-wave polarization parameters is suggested, based on the definition of a characteristic function, which evaluates the polarization angles and their time variability as well as the amplitude, linearity and the signal-to-noise ratio of the P-wave. P-wave polarization at the GRF array is shown to depend mainly on frequency and backazimuth and only slightly on epicentral distance indicating depth dependent local anisotropy and lateral heterogeneity. A harmonic analysis is applied to the azimuthal anomalies to analyze their periodicity as a function of backazimuth. The dominant periods are 180° and 360°. At low frequencies, between 0.03-0.1 Hz, the observed fast directions of azimuthal anisotropy inferred from the 180° periodicity are similar across the array. The average fast direction of azimuthal anisotropy at these frequencies is N20°E with an uncertainty of about 8° and is consistent with fast directions of Pn-wave propagation. Lateral velocity gradients determined for the low frequency band are compatible with the Moho topography of the area. A more complex pattern in the horizontal fast axis orientation beneath the GRF array is observed in the high frequency band between 0.1-0.5 Hz, and is attributed to anisotropy in the upper crust. A remarkable rotation of the horizontal fast axis orientation across the suture between the geological units Moldanubicum and Saxothuringicum is observed. In contrast, the 360° periodicity at high frequencies is rather consistent across the array and may either point to lower velocities in the upper crust towards the Bohemian Massif and/or to anisotropy dipping predominantly in the NE-SW direction. Altogether, P-wave polarization analysis indicates the presence of layered lithospheric

  2. Failure mode analysis of silicon-based intracortical microelectrode arrays in non-human primates

    NASA Astrophysics Data System (ADS)

    Barrese, James C.; Rao, Naveen; Paroo, Kaivon; Triebwasser, Corey; Vargas-Irwin, Carlos; Franquemont, Lachlan; Donoghue, John P.

    2013-12-01

    Objective. Brain-computer interfaces (BCIs) using chronically implanted intracortical microelectrode arrays (MEAs) have the potential to restore lost function to people with disabilities if they work reliably for years. Current sensors fail to provide reliably useful signals over extended periods of time for reasons that are not clear. This study reports a comprehensive retrospective analysis from a large set of implants of a single type of intracortical MEA in a single species, with a common set of measures in order to evaluate failure modes. Approach. Since 1996, 78 silicon MEAs were implanted in 27 monkeys (Macaca mulatta). We used two approaches to find reasons for sensor failure. First, we classified the time course leading up to complete recording failure as acute (abrupt) or chronic (progressive). Second, we evaluated the quality of electrode recordings over time based on signal features and electrode impedance. Failure modes were divided into four categories: biological, material, mechanical, and unknown. Main results. Recording duration ranged from 0 to 2104 days (5.75 years), with a mean of 387 days and a median of 182 days (n = 78). Sixty-two arrays failed completely with a mean time to failure of 332 days (median = 133 days) while nine array experiments were electively terminated for experimental reasons (mean = 486 days). Seven remained active at the close of this study (mean = 753 days). Most failures (56%) occurred within a year of implantation, with acute mechanical failures the most common class (48%), largely because of connector issues (83%). Among grossly observable biological failures (24%), a progressive meningeal reaction that separated the array from the parenchyma was most prevalent (14.5%). In the absence of acute interruptions, electrode recordings showed a slow progressive decline in spike amplitude, noise amplitude, and number of viable channels that predicts complete signal loss by about eight years. Impedance measurements showed

  3. Application of neural networks to digital pulse shape analysis for an array of silicon strip detectors

    NASA Astrophysics Data System (ADS)

    Flores, J. L.; Martel, I.; Jiménez, R.; Galán, J.; Salmerón, P.

    2016-09-01

    The new generation of nuclear physics detectors that used to study nuclear reactions is considering the use of digital pulse shape analysis techniques (DPSA) to obtain the (A,Z) values of the reaction products impinging in solid state detectors. This technique can be an important tool for selecting the relevant reaction channels at the HYDE (HYbrid DEtector ball array) silicon array foreseen for the Low Energy Branch of the FAIR facility (Darmstadt, Germany). In this work we study the feasibility of using artificial neural networks (ANNs) for particle identification with silicon detectors. Multilayer Perceptron networks were trained and tested with recent experimental data, showing excellent identification capabilities with signals of several isotopes ranging from 12C up to 84Kr, yielding higher discrimination rates than any other previously reported.

  4. Clinical utility of an array comparative genomic hybridization analysis for Williams syndrome.

    PubMed

    Yagihashi, Tatsuhiko; Torii, Chiharu; Takahashi, Reiko; Omori, Mikimasa; Kosaki, Rika; Yoshihashi, Hiroshi; Ihara, Masahiro; Minagawa-Kawai, Yasuyo; Yamamoto, Junichi; Takahashi, Takao; Kosaki, Kenjiro

    2014-11-01

    To reveal the relation between intellectual disability and the deleted intervals in Williams syndrome, we performed an array comparative genomic hybridization analysis and standardized developmental testing for 11 patients diagnosed as having Williams syndrome based on fluorescent in situ hybridization testing. One patient had a large 4.2-Mb deletion spanning distally beyond the common 1.5-Mb intervals observed in 10/11 patients. We formulated a linear equation describing the developmental age of the 10 patients with the common deletion; the developmental age of the patient with the 4.2-Mb deletion was significantly below the expectation (developmental age = 0.51 × chronological age). The large deletion may account for the severe intellectual disability; therefore, the use of array comparative genomic hybridization may provide practical information regarding individuals with Williams syndrome.

  5. Loch Linnhe `94: Current meter array operations and on-site analysis

    SciTech Connect

    Chambers, D.H.; Jones, H.E.

    1995-08-11

    This report documents the operation and on-site data analysis of the LLNL Current Meter Array (CMA) which was fielded at Loch Linnhe `94. The CMA is a large floating array of 10 sensors which measure horizontal current near the water surface. The measurements are used to interpret radar images of the water surface. This experiment was conducted as a part of the Joint UK/US Radar Ocean Imaging (ROI) Program. It was held at Loch Linnhe, Scotland in September 1994. The experiment consisted of measuring natural and ship-generated internal waves (IWs) in Loch Linnhe and imaging them with a land-based, dual frequency, dual-polarization real aperture radar operated by the UK. The goal was to determine the relationship between the amplitude of IWs as measured by instrumentation deployed in the water and the modulation they produce in radar images of the water surface.

  6. Nuclear analysis for the intor array of loops ICRF launcher module design

    SciTech Connect

    Sawan, M.E.

    1985-07-01

    Nuclear analysis for the array of loops ICRF launcher module design of INTOR is presented. The nuclear radiation environment in the different module components is determined. The fast neutron fluence in the BeO radome is 10/sup 22/ n/cm/sup 2/ after one full power year leading to significant microcracking. Activation calculations for SF/sub 6/ imply a total activity of 5 x 10/sup 4/ Ci at shutdown. Nuclear heating results in a large breakdown rate in SF/sub 6/. A 1.6 m thick nuclear shield is needed to allow for hands-on maintenance one day after shutdown behind the launcher module. The results imply that significant design changes are required for the array of loops ICRF launcher module to stand the severe INTOR nuclear environment.

  7. Protein western array analysis in human pituitary tumours: insights and limitations.

    PubMed

    Ribeiro-Oliveira, Antônio; Franchi, Giulia; Kola, Blerina; Dalino, Paolo; Pinheiro, Sérgio Veloso Brant; Salahuddin, Nabila; Musat, Madalina; Góth, Miklós I; Czirják, Sándor; Hanzély, Zoltán; da Silva, Deivid Augusto; Paulino, Eduardo; Grossman, Ashley B; Korbonits, Márta

    2008-12-01

    The molecular analysis of pituitary tumours has received a great deal of attention, although the majority of studies have concentrated on the genome and the transcriptome. We aimed to study the proteome of human pituitary adenomas. A protein array using 1005 monoclonal antibodies was used to study GH-, corticotrophin- and prolactin-secreting as well as non-functioning pituitary adenomas (NFPAs). Individual protein expression levels in the tumours were compared with the expression profile of normal pituitary tissue. Out of 316 proteins that were detected in the pituitary tissue samples, 116 proteins had not previously been described in human pituitary tissue. Four prominent differentially expressed proteins with potential importance to tumorigenesis were chosen for validation by immunohistochemistry and western blotting. In the protein array analysis heat shock protein 110 (HSP110), a chaperone associated with protein folding, and B2 bradykinin receptor, a potential regulator of prolactin secretion, were significantly overexpressed in all adenoma subtypes, while C-terminal Src kinase (CSK), an inhibitor of proto-oncogenic enzymes, and annexin II, a calcium-dependent binding protein, were significantly underexpressed in all adenoma subtypes. The immunohistochemical analysis confirmed the overexpression of HSP110 and B2 bradykinin receptor and underexpression of CSK and annexin II in pituitary adenoma cells when compared with their corresponding normal pituitary cells. Western blotting only partially confirmed the proteomics data: HSP110 was significantly overexpressed in prolactinomas and NFPAs, the B2 bradykinin receptor was significantly overexpressed in prolactinomas, annexin II was significantly underexpressed in somatotrophinomas, while CSK did not show significant underexpression in any tumour. Protein expression analysis of pituitary samples disclosed both novel proteins and putative protein candidates for pituitary tumorigenesis, though validation using

  8. Analysis of an industrial production suspension of Bacillus lentus subtilisin crystals by powder diffraction: a powerful quality-control tool.

    PubMed

    Frankaer, Christian G; Moroz, Olga V; Turkenburg, Johan P; Aspmo, Stein I; Thymark, Majbritt; Friis, Esben P; Stahl, Kenny; Nielsen, Jens E; Wilson, Keith S; Harris, Pernille

    2014-04-01

    A microcrystalline suspension of Bacillus lentus subtilisin (Savinase) produced during industrial large-scale production was analysed by X-ray powder diffraction (XRPD) and X-ray single-crystal diffraction (MX). XRPD established that the bulk microcrystal sample representative of the entire production suspension corresponded to space group P212121, with unit-cell parameters a = 47.65, b = 62.43, c = 75.74 Å, equivalent to those for a known orthorhombic crystal form (PDB entry 1ndq). MX using synchrotron beamlines at the Diamond Light Source with beam dimensions of 20 × 20 µm was subsequently used to study the largest crystals present in the suspension, with diffraction data being collected from two single crystals (∼20 × 20 × 60 µm) to resolutions of 1.40 and 1.57 Å, respectively. Both structures also belonged to space group P2(1)2(1)2(1), but were quite distinct from the dominant form identified by XRPD, with unit-cell parameters a = 53.04, b = 57.55, c = 71.37 Å and a = 52.72, b = 57.13, c = 65.86 Å, respectively, and refined to R = 10.8% and Rfree = 15.5% and to R = 14.1% and Rfree = 18.0%, respectively. They are also different from any of the forms previously reported in the PDB. A controlled crystallization experiment with a highly purified Savinase sample allowed the growth of single crystals of the form identified by XRPD; their structure was solved and refined to a resolution of 1.17 Å with an R of 9.2% and an Rfree of 11.8%. Thus, there are at least three polymorphs present in the production suspension, albeit with the 1ndq-like microcrystals predominating. It is shown how the two techniques can provide invaluable and complementary information for such a production suspension and it is proposed that XRPD provides an excellent quality-control tool for such suspensions.

  9. Magnetic field analysis of novel spherical actuators with three-dimensional pole arrays

    NASA Astrophysics Data System (ADS)

    Yan, Liang; Liang, Fengqi; Jiao, Zongxia; Wang, Tianyi

    2016-06-01

    Spherical actuator is an electric device that can achieve multiple degree-of-freedom rotary motions in a single joint. Permanent magnet array is a key factor that influences the output performance of electromagnetic spherical actuators. In this paper, a novel three-dimensional (3D) pole array is proposed to improve the system flux density and thus the output performance. Analysis of magnetic field distribution is extremely important for spherical actuators with 3D magnet arrays. Thus, the investigation of magnetic field is conducted in analytical, numerical, and experimental ways. The general solution of magnetic scalar potential in 3D space is formulated analytically based on Laplace's equations and spherical harmonics, and then specific solutions of the magnetic scalar potential and magnetic flux density are obtained by using boundary conditions. Numerical computation is utilized to validate the analytical model and to facilitate the observation of the magnetic field variation. A research prototype and a testing platform of magnetic field have been developed for experimental study. The testing platform can move the probe to any position around the spherical actuator and measure the flux density automatically. Experiments are conducted to obtain the flux distribution. Both numerical and experimental results validate the analytical model well.

  10. Analysis of microseismic activity detected by the WIZARD array, Alpine Fault, New Zealand

    NASA Astrophysics Data System (ADS)

    Feenstra, J. P.; Roecker, S. W.; Thurber, C. H.; Lord, N.; O'Brien, G.; Pesicek, J. D.; Townend, J.; Bannister, S. C.

    2012-12-01

    A primary goal for the UW-Madison-RPI WIZARD array is the characterization of background seismicity around the Deep Fault Drilling Project (DFDP) site on the Alpine Fault, South Island, New Zealand. The WIZARD array consists of 20 stations, half broadband, deployed for a planned 2-year period around the Whataroa Valley DFDP-2 drill site. Two neighboring arrays, SAMBA (Victoria University of Wellington) to the southwest and ALFA'12 (GNS Science) to the northeast, along with several GeoNet permanent stations, provide broad coverage of the region. The earthquakes that are detected will (1) help to define the geometry of the Alpine Fault and other active faults at depth, (2) provide data for seismic imaging, focal mechanisms, and shear-wave splitting analysis, and (3) enable the assessment of possible changes in seismic activity induced by future fault zone drilling. We are currently analyzing data from the first 2 months of the deployment. Dozens of nearby earthquakes (S-P time of up to a few seconds) have been detected, far more than are in the New Zealand GeoNET catalog. This is expected because the magnitude completion level of the GeoNet seismometer network is around 2.5 in the Whataroa region, due to a relatively sparse station coverage. In this presentation, we report on earthquake location results for 8 months of WIZARD data, along with focal mechanisms for selected larger events.

  11. Monte Carlo analysis of the enhanced transcranial penetration using distributed near-infrared emitter array.

    PubMed

    Yue, Lan; Humayun, Mark S

    2015-08-01

    Transcranial near-infrared (NIR) treatment of neurological diseases has gained recent momentum. However, the low NIR dose available to the brain, which shows severe scattering and absorption of the photons by human tissues, largely limits its effectiveness in clinical use. Hereby, we propose to take advantage of the strong scattering effect of the cranial tissues by applying an evenly distributed multiunit emitter array on the scalp to enhance the cerebral photon density while maintaining each single emitter operating under the safe thermal limit. By employing the Monte Carlo method, we simulated the transcranial propagation of the array emitted light and demonstrated markedly enhanced intracranial photon flux as well as improved uniformity of the photon distribution. These enhancements are correlated with the source location, density, and wavelength of light. To the best of our knowledge, we present the first systematic analysis of the intracranial light field established by the scalp-applied multisource array and reveal a strategy for the optimization of the therapeutic effects of the NIR radiation.

  12. Array painting: a protocol for the rapid analysis of aberrant chromosomes using DNA microarrays

    PubMed Central

    Gribble, Susan M; Ng, Bee Ling; Prigmore, Elena; Fitzgerald, Tomas; Carter, Nigel P

    2012-01-01

    Aarray painting is a technique that uses microarray technology to rapidly map chromosome translocation breakpoints. previous methods to map translocation breakpoints have used fluorescence in situ hybridization (FIsH) and have consequently been labor-intensive, time-consuming and restricted to the low breakpoint resolution imposed by the use of metaphase chromosomes. array painting combines the isolation of derivative chromosomes (chromosomes with translocations) and high-resolution microarray analysis to refine the genomic location of translocation breakpoints in a single experiment. In this protocol, we describe array painting by isolation of derivative chromosomes using a MoFlo flow sorter, amplification of these derivatives using whole-genome amplification and hybridization onto commercially available oligonucleotide microarrays. although the sorting of derivative chromosomes is a specialized procedure requiring sophisticated equipment, the amplification, labeling and hybridization of Dna is straightforward, robust and can be completed within 1 week. the protocol described produces good quality data; however, array painting is equally achievable using any combination of the available alternative methodologies for chromosome isolation, amplification and hybridization. PMID:19893508

  13. Improved implementation of the fk and Capon methods for array analysis of seismic noise

    NASA Astrophysics Data System (ADS)

    Gal, M.; Reading, A. M.; Ellingsen, S. P.; Koper, K. D.; Gibbons, S. J.; Näsholm, S. P.

    2014-08-01

    The frequency-wavenumber (fk) and Capon methods are widely used in seismic array studies of background or ambient noise to infer the backazimuth and slowness of microseismic sources. We present an implementation of these techniques for the analysis of microseisms (0.05-2 Hz) which draws on array signal processing literature from a range of disciplines. The presented techniques avoid frequency mixing in the cross-power spectral density and therefore yield an accurate slowness vector estimation of the incoming seismic waves. Using synthetic data, we show explicitly how the frequency averaged broad-band approach can result in a slowness-shifted spectrum. The presented implementation performs the slowness estimations individually for each frequency bin and sums the resulting slowness spectra over a specific frequency range. This may be termed an incoherently averaged signal, or IAS, approach. We further modify the method through diagonal loading to ensure a robust solution. The synthetic data show good agreement between the analytically derived and inferred error in slowness. Results for real (observed) data are compared between the approximate and IAS methods for two different seismic arrays. The IAS method results in the improved resolution of features, particularly for the Capon spectrum, and enables, for instance, Rg and Lg arrivals from similar backazimuths to be separated in the case of real data.

  14. Magnetic field analysis of novel spherical actuators with three-dimensional pole arrays.

    PubMed

    Yan, Liang; Liang, Fengqi; Jiao, Zongxia; Wang, Tianyi

    2016-06-01

    Spherical actuator is an electric device that can achieve multiple degree-of-freedom rotary motions in a single joint. Permanent magnet array is a key factor that influences the output performance of electromagnetic spherical actuators. In this paper, a novel three-dimensional (3D) pole array is proposed to improve the system flux density and thus the output performance. Analysis of magnetic field distribution is extremely important for spherical actuators with 3D magnet arrays. Thus, the investigation of magnetic field is conducted in analytical, numerical, and experimental ways. The general solution of magnetic scalar potential in 3D space is formulated analytically based on Laplace's equations and spherical harmonics, and then specific solutions of the magnetic scalar potential and magnetic flux density are obtained by using boundary conditions. Numerical computation is utilized to validate the analytical model and to facilitate the observation of the magnetic field variation. A research prototype and a testing platform of magnetic field have been developed for experimental study. The testing platform can move the probe to any position around the spherical actuator and measure the flux density automatically. Experiments are conducted to obtain the flux distribution. Both numerical and experimental results validate the analytical model well. PMID:27370488

  15. Detection and Analysis of Low-Frequency Sperm Whale Vocalizations with a Towed Array

    NASA Astrophysics Data System (ADS)

    Bohn, Alexander

    Sperm whale vocalizations recorded during a sea test and calibration experiment in the Gulf of Maine on a single towed, horizontal, densely sampled, low-frequency (< 2500 Hz), coherent hydrophone array system are detected and analyzed for signal energy level and other characteristics. The vocalizing individuals are localized in bearing, range, and depth. An algorithm is developed to achieve automatic detection of vocalizations. This analysis is shown to have potential utility despite restriction to only the low-frequency component of the vocalizations by sampling theory. In addition, transmission loss in the New England continental shelf and slope environment is accounted for with an ocean waveguide-acoustic propagation model. Multiple averaged realizations of this model are used to estimate transmission loss as a function of range and depth for transects between the receiver array and vocalizing whales. Comparison of the vocalizations and background noise levels and the estimated transmission loss suggests the sperm whale detection range after coherent array processing exceeds 60 km in low-to-moderate sea states. Low-frequency source levels of vocalizations are estimated using the received levels and the estimated transmission loss, and applications of both this estimate and the receiver-side statistics are discussed.

  16. Array CGH analysis of the rare laryngeal basaloid squamous cell carcinoma - a case report

    PubMed Central

    Ecsedi, Szilvia; Tóth, László; Balázs, Margit

    2012-01-01

    The aim of this study was to define copy number alterations in a rare laryngeal type basaloid squamous cell carcinoma (laryngeal BSCC) using high throughput array comparative genomic hybridization. This is the first genome wide screening of a laryngeal BSCC describing the unique events of DNA copy number changes. By Nimble-Gen Whole Genome Tiling Array CGH (consisting of 72,000 probes) we were able to identify 3,777 genes altered by copy number changes (1,726 genes with copy number gains and 2,051 genes with copy number with losses). The resolution of the array allowed us to identify a new alteration at the 17q21.31 region covering the DUSP3 gene which encodes the dual-specific protein phosphatase. Functional studies of the altered genes (Database for Annotation, Visualization and Integrated Discovery v6.7 analysis) highlighted molecular pathways including chemokine signaling, cell cycle, adherent junction-, VEGF- and TGF-beta signaling pathways that might be disrupted by copy number alterations in laryngeal BSCC. PMID:23071866

  17. Solar array design based on shadow analysis for increasing net energy collection in a competition vehicle

    NASA Astrophysics Data System (ADS)

    Osorio-Gómez, Gilberto; Mejía-Gutiérrez, Ricardo; Suárez-Castañeda, Nicolás; Gil-Herrera, Ana; Barrera-Velásquez, Jorge

    2015-01-01

    Photovoltaic (PV) applications such as in the architectural, automotive, and aerospace industries face design contradictions because they are expected to produce a lot of energy but are constrained by available area, surface shape, incident irradiance, shadows, and other aspects that have a negative influence on the energy produced by the solar panel. Solar competition vehicles are some of these challenging PV applications. The design of such solar arrays needs to consider efficiency evaluation in order to optimize space; it is difficult not to install solar modules in areas impacted by shadows. A design procedure for a solar array configuration based on shadow analysis for competition vehicles is presented. The principle is that shadows in moving objects can be simulated, since the vehicle, the earth and the sun are are moving in semipredictable patterns, thus net energy collection can be forecast. The case study presented is the solar array design of a vehicle that participated in the World Solar Challenge 2013. The obtained results illustrate how the employment of the procedure gives insights on important aspects to consider and also delivers qualitative and quantitative information for decision making. In addition, the experience in competition highlights some issues to be considered, modified, or improved in further vehicle designs.

  18. Data in support of proteomic analysis of pneumococcal pediatric clinical isolates to construct a protein array

    PubMed Central

    Olaya-Abril, Alfonso; Obando, Ignacio; Rodríguez-Ortega, Manuel J.

    2016-01-01

    Surface proteins play key roles in the interaction between cells and their environment, and in pathogenic microorganisms they are the best targets for drug or vaccine discovery and/or development. In addition, surface proteins can be the basis for serodiagnostic tools aiming at developing more affordable techniques for early diagnosis of infection in patients. We carried out a proteomic analysis of a collection of pediatric clinical isolates of Streptococcus pneumoniae, an important human pathogen responsible for more than 1.5 million child deaths worldwide. For that, cultured live bacterial cells were “shaved” with trypsin, and the recovered peptides were analyzed by LC/MS/MS. We selected 95 proteins to be produced as recombinant polypeptides, and printed them on an array. We probed the protein array with a collection of patient sera to define serodiagnostic antigens. The mass spectrometry proteomics data correspond to those published in [1] and have been deposited to the ProteomeXchange Consortium [2] via the PRIDE partner repository [3] with the dataset identifier PXD001740. The protein array raw data are provided as supplemental material in this article. PMID:26949725

  19. MIR Solar Array Return Experiment: Power Performance Measurements and Molecular Contamination Analysis Results

    NASA Technical Reports Server (NTRS)

    Visentine, James; Kinard, William; Brinker, David; Scheiman, David; Banks, Bruce; Albyn, Keith; Hornung, Steve; See, Thomas

    2001-01-01

    A solar array segment was recently removed from the Mir core module and returned for ground-based analysis. The segment, which is similar to the ones the Russians have provided for the FGB and Service Modules, was microscopically examined and disassembled by US and Russian science teams. Laboratory analyses have shown the segment to he heavily contaminated by an organic silicone coating, which was converted to an organic silicate film by reactions with atomic oxygen within the. orbital flight environment. The source of the contaminant was a silicone polymer used by the Russians as an adhesive and bonding agent during segment construction. During its life cycle, the array experienced a reduction in power performance from approx. 12%, when it was new and first deployed, to approx. 5%, when it was taken out of service. However, current-voltage measurements of three contaminated cells and three pristine, Russian standard cells have shown that very little degradation in solar array performance was due to the silicate contaminants on the solar cell surfaces. The primary sources of performance degradation is attributed to "thermal hot-spotting" or electrical arcing; orbital debris and micrometeoroid impacts; and possibly to the degradation of the solar cells and interconnects caused by radiation damage from high energy protons and electrons.

  20. Statistical Analysis of the Performance of MDL Enumeration for Multiple-Missed Detection in Array Processing

    PubMed Central

    Du, Fei; Li, Yibo; Jin, Shijiu

    2015-01-01

    An accurate performance analysis on the MDL criterion for source enumeration in array processing is presented in this paper. The enumeration results of MDL can be predicted precisely by the proposed procedure via the statistical analysis of the sample eigenvalues, whose distributive properties are investigated with the consideration of their interactions. A novel approach is also developed for the performance evaluation when the source number is underestimated by a number greater than one, which is denoted as “multiple-missed detection”, and the probability of a specific underestimated source number can be estimated by ratio distribution analysis. Simulation results are included to demonstrate the superiority of the presented method over available results and confirm the ability of the proposed approach to perform multiple-missed detection analysis. PMID:26295232

  1. Spectral analysis of the primary flight focal plane arrays for the thermal infrared sensor

    NASA Astrophysics Data System (ADS)

    Montanaro, Matthew; Reuter, Dennis C.; Markham, Brian L.; Thome, Kurtis J.; Lunsford, Allen W.; Jhabvala, Murzy D.; Rohrbach, Scott O.; Gerace, Aaron D.

    2011-06-01

    The Thermal Infrared Sensor (TIRS) on board the Landsat Data Continuity Mission (LDCM) is a two-channel, push-broom imager that will continue Landsat thermal band measurements of the Earth. The core of the instrument consists of three Quantum Well Infrared Photodetector (QWIP) arrays whose data are combined to effectively produce a linear array of 1850 pixels for each band with a spatial resolution of approximately 100 meters and a swath width of 185 kilometers. In this push-broom configuration, each pixel may have a slightly different band shape. An on-board blackbody calibrator is used to correct each pixel. However, depending on the scene being observed, striping and other artifacts may still be present in the final data product. The science-focused mission of LDCM requires that these residual effects be understood. The analysis presented here assisted in the selection of the three flight QWIP arrays. Each pixel was scrutinized in terms of its compliance with TIRS spectral requirements. This investigation utilized laboratory spectral measurements of the arrays and filters along with radiometric modeling of the TIRS instrument and environment. These models included standard radiometry equations along with complex physics-based models such as the MODerate spectral resolution TRANsmittance (MODTRAN) and Digital Imaging and Remote Sensing Image Generation (DIRSIG) tools. The laboratory measurements and physics models were used to determine the extent of striping and other spectral artifacts that might be present in the final TIRS data product. The results demonstrate that artifacts caused by the residual pixel-to-pixel spectral non-uniformity are small enough that the data can be expected to meet the TIRS radiometric and image quality requirements.

  2. Investigating high-concentration monoclonal antibody powder suspension in nonaqueous suspension vehicles for subcutaneous injection.

    PubMed

    Bowen, Mayumi; Armstrong, Nick; Maa, Yuh-Fun

    2012-12-01

    Developing high-concentration monoclonal antibody (mAb) liquid formulations for subcutaneous (s.c.) administration is challenging because increased viscosity makes injection difficult. To overcome this obstacle, we investigated a nonaqueous powder suspension approach. Three IgG1 mAbs were spray dried and suspended at different concentrations in Miglyol® 840, benzyl benzoate, or ethyl lactate. Suspensions were characterized for viscosity, particle size, and syringeability; physical stability was visually inspected. Suspensions generally outperformed liquid solutions for injectability despite higher viscosity at the same mAb concentrations. Powder formulations and properties had little effect on viscosity or injectability. Ethyl lactate suspensions had lowest viscosity (<20 cP) and lowest syringe injection glide force (<15 N) at mAb concentrations as high as 333 mg/mL (500 mg powder/mL). Inverse gas chromatography analysis indicated that the vehicle was the most important factor impacting suspension performance. Ethyl lactate rendered greater heat of sorption (suggesting strong particle-suspension vehicle interaction may reduce particle-particle self-association, leading to low suspension viscosity and glide force) but lacked the physical suspension stability exhibited by the other vehicles. Specific mixtures of ethyl lactate and Miglyol® 840 improved overall performance in high mAb concentration suspensions. This study demonstrated the viability of high mAb concentration (>300 mg/mL) in suspension formulations for s.c. administration.

  3. Magnetic Suspension Technology Development

    NASA Technical Reports Server (NTRS)

    Britcher, Colin

    1998-01-01

    This Cooperative Agreement, intended to support focused research efforts in the area of magnetic suspension systems, was initiated between NASA Langley Research Center (LaRC) and Old Dominion University (ODU) starting January 1, 1997. The original proposal called for a three-year effort, but funding for the second year proved to be unavailable, leading to termination of the agreement following a 5-month no-cost extension. This report covers work completed during the entire 17-month period of the award. This research built on work that had taken place over recent years involving both NASA LARC and the Principal Investigator (PI). The research was of a rather fundamental nature, although specific applications were kept in mind at all times, such as wind tunnel Magnetic Suspension and Balance Systems (MSBS), space payload pointing and vibration isolation systems, magnetic bearings for unconventional applications, magnetically levitated ground transportation and electromagnetic launch systems. Fundamental work was undertaken in areas such as the development of optimized magnetic configurations, analysis and modelling of eddy current effects, control strategies for magnetically levitated wind tunnel models and system calibration procedures. Despite the termination of this Cooperative Agreement, several aspects of the research work are currently continuing with alternative forms of support.

  4. Metal oxide based multisensor array and portable database for field analysis of antioxidants

    PubMed Central

    Sharpe, Erica; Bradley, Ryan; Frasco, Thalia; Jayathilaka, Dilhani; Marsh, Amanda; Andreescu, Silvana

    2014-01-01

    We report a novel chemical sensing array based on metal oxide nanoparticles as a portable and inexpensive paper-based colorimetric method for polyphenol detection and field characterization of antioxidant containing samples. Multiple metal oxide nanoparticles with various polyphenol binding properties were used as active sensing materials to develop the sensor array and establish a database of polyphenol standards that include epigallocatechin gallate, gallic acid, resveratrol, and Trolox among others. Unique charge-transfer complexes are formed between each polyphenol and each metal oxide on the surface of individual sensors in the array, creating distinct optically detectable signals which have been quantified and logged into a reference database for polyphenol identification. The field-portable Pantone/X-Rite© CapSure® color reader was used to create this database and to facilitate rapid colorimetric analysis. The use of multiple metal-oxide sensors allows for cross-validation of results and increases accuracy of analysis. The database has enabled successful identification and quantification of antioxidant constituents within real botanical extractions including green tea. Formation of charge-transfer complexes is also correlated with antioxidant activity exhibiting electron transfer capabilities of each polyphenol. The antioxidant activity of each sample was calculated and validated against the oxygen radical absorbance capacity (ORAC) assay showing good comparability. The results indicate that this method can be successfully used for a more comprehensive analysis of antioxidant containing samples as compared to conventional methods. This technology can greatly simplify investigations into plant phenolics and make possible the on-site determination of antioxidant composition and activity in remote locations. PMID:24610993

  5. Metal oxide based multisensor array and portable database for field analysis of antioxidants.

    PubMed

    Sharpe, Erica; Bradley, Ryan; Frasco, Thalia; Jayathilaka, Dilhani; Marsh, Amanda; Andreescu, Silvana

    2014-03-31

    We report a novel chemical sensing array based on metal oxide nanoparticles as a portable and inexpensive paper-based colorimetric method for polyphenol detection and field characterization of antioxidant containing samples. Multiple metal oxide nanoparticles with various polyphenol binding properties were used as active sensing materials to develop the sensor array and establish a database of polyphenol standards that include epigallocatechin gallate, gallic acid, resveratrol, and Trolox among others. Unique charge-transfer complexes are formed between each polyphenol and each metal oxide on the surface of individual sensors in the array, creating distinct optically detectable signals which have been quantified and logged into a reference database for polyphenol identification. The field-portable Pantone/X-Rite© CapSure® color reader was used to create this database and to facilitate rapid colorimetric analysis. The use of multiple metal-oxide sensors allows for cross-validation of results and increases accuracy of analysis. The database has enabled successful identification and quantification of antioxidant constituents within real botanical extractions including green tea. Formation of charge-transfer complexes is also correlated with antioxidant activity exhibiting electron transfer capabilities of each polyphenol. The antioxidant activity of each sample was calculated and validated against the oxygen radical absorbance capacity (ORAC) assay showing good comparability. The results indicate that this method can be successfully used for a more comprehensive analysis of antioxidant containing samples as compared to conventional methods. This technology can greatly simplify investigations into plant phenolics and make possible the on-site determination of antioxidant composition and activity in remote locations. PMID:24610993

  6. Analysis and testing of an integrated semi-active seat suspension for both longitudinal and vertical vibration control

    NASA Astrophysics Data System (ADS)

    Bai, Xian-Xu; Jiang, Peng; Pan, Hui; Qian, Li-Jun

    2016-04-01

    An integrated semi-active seat suspension for both longitudinal and vertical vibration control is analyzed and tested in this paper. The seat suspension consists of a switching mechanism transforming both longitudinal and vertical motions into a rotary motion and a real-time damping-controllable system-a rotary magnetorheological (MR) damper working in pure shear mode and its corresponding control system. The switching mechanism employs the parallelogram frames as a motion guide which keeps the seat moving longitudinally and vertically. At the same time, both longitudinal and vertical motions are transformed into a reciprocating rotary motion that is transmitted to the rotary MR damper after an amplification by a gear mechanism. Both the longitudinal and vertical vibrations can be attenuated in real time through controlling the damping force (or torque) of the rotary MR damper. The mathematical model of the seat suspension system is established, simulated, and analyzed. The experimental test based on the test rig in Hefei University of Technology is implemented, and the results of simulation and experimental test are compared and analyzed.

  7. Low-volume multiplexed proteolytic activity assay and inhibitor analysis through a pico-injector array.

    PubMed

    Ng, Ee Xien; Miller, Miles A; Jing, Tengyang; Lauffenburger, Doug A; Chen, Chia-Hung

    2015-02-21

    Secreted active proteases, from families of enzymes such as matrix metalloproteinases (MMPs) and ADAMs (a disintegrin and metalloproteinases), participate in diverse pathological processes. To simultaneously measure multiple specific protease activities, a series of parallel enzyme reactions combined with a series of inhibitor analyses for proteolytic activity matrix analysis (PrAMA) are essential but limited due to the sample quantity requirements and the complexity of performing multiple reactions. To address these issues, we developed a pico-injector array to generate 72 different reactions in picoliter-volume droplets by controlling the sequence of combinational injections, which allowed simultaneous recording of a wide range of multiple enzyme reactions and measurement of inhibitor effects using small sample volumes (~10 μL). Multiple MMP activities were simultaneously determined by 9 different substrates and 2 inhibitors using injections from a pico-injector array. Due to the advantages of inhibitor analysis, the MMP/ADAM activities of MDA-MB-231, a breast cancer cell line, were characterized with high MMP-2, MMP-3 and ADAM-10 activity. This platform could be customized for a wide range of applications that also require multiple reactions with inhibitor analysis to enhance the sensitivity by encapsulating different chemical sensors.

  8. A Thermal Analysis Approach for the Mars Odyssey Spacecraft's Solar Array

    NASA Technical Reports Server (NTRS)

    Dec, John A.; Amundsen, Ruth M.

    2003-01-01

    There are numerous challenges associated with placing a spacecraft in orbit around Mars. Often. trades must be made such as the mass of the payload and the amount of fuel that can be carried. One technique employed to more efficiently place a spacecraft in orbit while maximizing payload mass (minimizing fuel use) is aerobraking. The Mars Odyssey Spacecraft made use of aerobraking to gradually reduce its orbit period from a highly elliptical insertion orbit to its final science orbit. Aerobraking introduces its own unique challenges, in particular, predicting the thermal response of the spacecraft and its components during each aerobraking drag pass. This paper describes the methods used to perform aerobraking thermal analysis using finite element thermal models of the Mars Odyssey Spacecraft's solar array. To accurately model the complex behavior during aerobraking, the thermal analysis must be tightly coupled to the spatially varying, time dependent aerodynamic heating analysis. Also, to properly represent the temperatures prior to the start of the drag pass. the model must include the orbital solar and planetary heat fluxes. It is critical that the thermal behavior be predicted accurately to maintain the solar array below its structural flight allowable temperature limit. The goal of this paper is to describe a thermal modeling method that was developed for this purpose.

  9. Ultrasensitive Label-free Electronic Chip for DNA Analysis Using Carbon Nanotube Nanoelectrode Arrays

    NASA Technical Reports Server (NTRS)

    Li, Jun; Koehne, Jessica; Chen, Hua; Cassell, Alan; Ng, Hou Tee; Ye, Qi; Han, Jie; Meyyappan, M.

    2004-01-01

    There is a strong need for faster, cheaper, and simpler methods for nucleic acid analysis in today s clinical tests. Nanotechnologies can potentially provide solutions to these requirements by integrating nanomaterials with biofunctionalities. Dramatic improvement in the sensitivity and multiplexing can be achieved through the high-degree miniaturization. Here, we present our study in the development of an ultrasensitive label-free electronic chip for DNA/RNA analysis based on carbon nanotube nanoelectrode arrays. A reliable nanoelectrode array based on vertically aligned multi-walled carbon nanotubes (MWNTs) embedded in a SiO2 matrix is fabricated using a bottom-up approach. Characteristic nanoelectrode behavior is observed with a low-density MWNT nanoelectrode array in measuring both the bulk and surface immobilized redox species. The open-end of MWNTs are found to present similar properties as graphite edge-plane electrodes, with a wide potential window, flexible chemical functionalities, and good biocompatibility. A BRCA1 related oligonucleotide probe with 18 bases is covalently functionalized at the open ends of the MWNTs and specifically hybridized with an oligonucleotide target as well as a PCR amplicon. The guanine bases in the target molecules are employed as the signal moieties for the electrochemical measurements. Ru(bpy)3(2+) mediator is used to further amplify the guanine oxidation signal. This technique has been employed for direct electrochemical detection of label-free PCR amplicon through specific hybridization with the BRCAl probe. The detection limit is estimated to be less than approximately 1000 DNA molecules, approaching the limit of the sensitivity by laser-based fluorescence techniques in DNA microarray. This system provides a general electronic platform for rapid molecular diagnostics in applications requiring ultrahigh sensitivity, high-degree of miniaturization, simple sample preparation, and low- cost operation.

  10. Microstamped Petri Dishes for Scanning Electrochemical Microscopy Analysis of Arrays of Microtissues

    PubMed Central

    Sridhar, Adithya; de Boer, Hans L.; van den Berg, Albert; Le Gac, Séverine

    2014-01-01

    While scanning electrochemical microscopy (SECM) is a powerful technique for non-invasive analysis of cells, SECM-based assays remain scarce and have been mainly limited so far to single cells, which is mostly due to the absence of suitable platform for experimentation on 3D cellular aggregates or microtissues. Here, we report stamping of a Petri dish with a microwell array for large-scale production of microtissues followed by their in situ analysis using SECM. The platform is realized by hot embossing arrays of microwells (200 μm depth; 400 μm diameter) in commercially available Petri dishes, using a PDMS stamp. Microtissues form spontaneously in the microwells, which is demonstrated here using various cell lines (e.g., HeLa, C2C12, HepG2 and MCF-7). Next, the respiratory activity of live HeLa microtissues is assessed by monitoring the oxygen reduction current in constant height mode and at various distances above the platform surface. Typically, at a 40 μm distance from the microtissue, a 30% decrease in the oxygen reduction current is measured, while above 250 μm, no influence of the presence of the microtissues is detected. After exposure to a model drug (50% ethanol), no such changes in oxygen concentration are found at any height in solution, which reflects that microtissues are not viable anymore. This is furthermore confirmed using conventional live/dead fluorescent stains. This live/dead assay demonstrates the capability of the proposed approach combining SECM and microtissue arrays formed in a stamped Petri dish for conducting cellular assays in a non-invasive way on 3D cellular models. PMID:24690887

  11. Ultrasonic characterization of shear thickening suspensions

    NASA Astrophysics Data System (ADS)

    Johnson, Benjamin Lenihan

    This dissertation describes the characterization of an inherently inhomogeneous medium capable of shear thickening. An aqueous suspension of cornstarch represents an important exemplar of such physical systems. The physics underlying the behavior of such shear thickening suspensions is incompletely understood. Characterization of these suspensions may provide valuable clues into the underlying mechanisms that result in shear thickening behavior. The goal of this thesis is to characterize the acoustic properties of suspensions of cornstarch in density-matched cesium chloride aqueous solutions. A review of the literature indicated that almost no information concerning the ultrasonic characteristics of suspensions of starches had been reported other than studies monitoring the gelatinization of starches not relevant to the shear stiffening of ungelatinized suspensions. Each chapter began with a discussion and validation of the specific experimental techniques and methods of analysis necessary for each type of measurement. Ultrasonic measurement of the group velocity, the frequency-dependent attenuation properties, the frequency-dependent phase velocity, and the frequency-dependent backscatter properties of the suspensions of cornstarch are reported. Initially counterintuitive results including negative (phase velocity) dispersion and a decrease in the measured backscatter coefficient with increasing particle concentration are understood in terms of widely accepted physical models. In sum, these studies represent an advancement of the understanding of the physics underlying the interaction between ultrasound and suspensions and lay the groundwork for future studies probing the physics of the shear thickening.

  12. Several small-scale vector array performance analysis and simulation of DOA estimation

    NASA Astrophysics Data System (ADS)

    Mei, Yinzhen

    2011-10-01

    To research the application and estimate performance in some small-scale vector sensor array by traditional direction of arrival estimate , we derivate the time delay expression of four small-scale non-uniform vector sensor array, the array direction vector is given, and the MUSIC algorithm is applied successfully to non-uniform vector array for direction of arrival(DOA) estimate, select the better performance of each array element setting method, and compare of beam forming, the probability of success and the mean square error, this shows that the performance of line array is best, followed by L-array and circular array, the performance of cross-array is worst.

  13. Analysis and design of a multisensory array for explosive substances based on solid electrodes

    NASA Astrophysics Data System (ADS)

    Baron, Mark; Barrett, Richard; Rodriguez, Jose-Gonzalez

    2012-09-01

    The detection of explosives and explosive related compounds is a subject of importance in several areas including environmental health, de-mining efforts (land and sea) and security and defence against terrorist activity. The use of electrochemical methods is particularly attractive as many common explosives contain suitable chemical groups to be detected using electrochemical methods. The electrochemical detection of explosives and related compounds in solution using a virtual metal electrode array and differential pulse voltammetry was achieved. The multiple sets of voltammetric data were integrated using multivariate analysis and matched with known substances present in explosives. Seven explosive substances: 2,4-initrotoluene, 2,6-dinitrotoluene, 3,4-dinitrotoluene, 2-nitrotoluene , octogen (HMX), pentaerithrytol tetranitrate (PETN), trinitrotoluene (TNT) and cyclonite (RDX) and a taggant agent 2,3-dimethyl-2,3-dinitrobutane (DMNB) were subjected to analysis using four solid electrodes, namely glassy carbon, silver, gold and platinum in saline aqueous solutions to mimic an aquatic environment. The results obtained in Differential Pulse Voltammetry (DPV) from the different experiments with each electrode were combined to produce a single voltammogram, which was subjected to chemometric analysis using Partial Least Squares (PLS) and Principle Component Analysis Non-Iterative Partial Least Squares (PCA-NIPALS). A combination of the electrochemical signals obtained together with the use of chemometric analysis made it possible to discriminate between explosives and their mixtures and also to quantitate their concentration in saline solutions. These combinations created a mathematical array, which clearly separates the explosives, even if the electrochemical information is buried or mixed with the electrode background noise.

  14. The ASTRI project within Cherenkov Telescope Array: data analysis and archiving

    NASA Astrophysics Data System (ADS)

    Antonelli, Lucio Angelo; Bastieri, Denis; Capalbi, Milvia; Carosi, Alessandro; Catalano, Osvaldo; Di Paola, Andrea; Gallozzi, Stefano; Lombardi, Saverio; Lucarelli, Fabrizio; Perri, Matteo; Testa, Vincenzo

    2014-07-01

    ASTRI is the flagship project of INAF (Italian National Institute for Astrophysics) mainly devoted to the development of Cherenkov small-size dual-mirror telescopes (SST-2M) in the framework of the international Cherenkov Telescope Array (CTA) Project. ASTRI SST-2M is an end-to-end prototype including scientific and technical operations as well as the related data analysis and archiving activities. We present here the ASTRI data handling and archiving system: it is responsible for both the on-site and off-site data processing and archiving. All the scientific, calibration, and engineering ASTRI data will be stored and organized in dedicated archives aimed to provide access to both the monitoring and data analysis systems.

  15. Failure mode analysis of silicon-based intracortical microelectrode arrays in non-human primates

    PubMed Central

    Barrese, James C; Rao, Naveen; Paroo, Kaivon; Triebwasser, Corey; Vargas-Irwin, Carlos; Franquemont, Lachlan; Donoghue, John P

    2016-01-01

    Objective Brain–computer interfaces (BCIs) using chronically implanted intracortical microelectrode arrays (MEAs) have the potential to restore lost function to people with disabilities if they work reliably for years. Current sensors fail to provide reliably useful signals over extended periods of time for reasons that are not clear. This study reports a comprehensive retrospective analysis from a large set of implants of a single type of intracortical MEA in a single species, with a common set of measures in order to evaluate failure modes. Approach Since 1996, 78 silicon MEAs were implanted in 27 monkeys (Macaca mulatta). We used two approaches to find reasons for sensor failure. First, we classified the time course leading up to complete recording failure as acute (abrupt) or chronic (progressive). Second, we evaluated the quality of electrode recordings over time based on signal features and electrode impedance. Failure modes were divided into four categories: biological, material, mechanical, and unknown. Main results Recording duration ranged from 0 to 2104 days (5.75 years), with a mean of 387 days and a median of 182 days (n = 78). Sixty-two arrays failed completely with a mean time to failure of 332 days (median = 133 days) while nine array experiments were electively terminated for experimental reasons (mean = 486 days). Seven remained active at the close of this study (mean = 753 days). Most failures (56%) occurred within a year of implantation, with acute mechanical failures the most common class (48%), largely because of connector issues (83%). Among grossly observable biological failures (24%), a progressive meningeal reaction that separated the array from the parenchyma was most prevalent (14.5%). In the absence of acute interruptions, electrode recordings showed a slow progressive decline in spike amplitude, noise amplitude, and number of viable channels that predicts complete signal loss by about eight years. Impedance measurements showed

  16. Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis

    PubMed Central

    Tomazou, Eleni M; Rakyan, Vardhman K; Lefebvre, Gregory; Andrews, Robert; Ellis, Peter; Jackson, David K; Langford, Cordelia; Francis, Matthew D; Bäckdahl, Liselotte; Miretti, Marcos; Coggill, Penny; Ottaviani, Diego; Sheer, Denise; Murrell, Adele; Beck, Stephan

    2008-01-01

    Background The major histocompatibility complex (MHC) is essential for human immunity and is highly associated with common diseases, including cancer. While the genetics of the MHC has been studied intensively for many decades, very little is known about the epigenetics of this most polymorphic and disease-associated region of the genome. Methods To facilitate comprehensive epigenetic analyses of this region, we have generated a genomic tiling array of 2 Kb resolution covering the entire 4 Mb MHC region. The array has been designed to be compatible with chromatin immunoprecipitation (ChIP), methylated DNA immunoprecipitation (MeDIP), array comparative genomic hybridization (aCGH) and expression profiling, including of non-coding RNAs. The array comprises 7832 features, consisting of two replicates of both forward and reverse strands of MHC amplicons and appropriate controls. Results Using MeDIP, we demonstrate the application of the MHC array for DNA methylation profiling and the identification of tissue-specific differentially methylated regions (tDMRs). Based on the analysis of two tissues and two cell types, we identified 90 tDMRs within the MHC and describe their characterisation. Conclusion A tiling array covering the MHC region was developed and validated. Its successful application for DNA methylation profiling indicates that this array represents a useful tool for molecular analyses of the MHC in the context of medical genomics. PMID:18513384

  17. Hindlimb suspension reduces muscle regeneration

    NASA Technical Reports Server (NTRS)

    Mozdziak, P. E.; Truong, Q.; Macius, A.; Schultz, E.

    1998-01-01

    Exposure of juvenile skeletal muscle to a weightless environment reduces growth and satellite cell mitotic activity. However, the effect of a weightless environment on the satellite cell population during muscle repair remains unknown. Muscle injury was induced in rat soleus muscles using the myotoxic snake venom, notexin. Rats were placed into hindlimb-suspended or weightbearing groups for 10 days following injury. Cellular proliferation during regeneration was evaluated using 5-bromo-2'-deoxyuridine (BrdU) immunohistochemistry and image analysis. Hindlimb suspension reduced (P < 0.05) regenerated muscle mass, regenerated myofiber diameter, uninjured muscle mass, and uninjured myofiber diameter compared to weightbearing rats. Hindlimb suspension reduced (P < 0.05) BrdU labeling in uninjured soleus muscles compared to weight-bearing muscles. However, hindlimb suspension did not abolish muscle regeneration because myofibers formed in the injured soleus muscles of hindlimb-suspended rats, and BrdU labeling was equivalent (P > 0.10) on myofiber segments isolated from the soleus muscles of hindlimb-suspended and weightbearing rats following injury. Thus, hindlimb suspension (weightlessness) does not suppress satellite cell mitotic activity in regenerating muscles before myofiber formation, but reduces growth of the newly formed myofibers.

  18. Gene expression profiles in squamous cell cervical carcinoma using array-based comparative genomic hybridization analysis.

    PubMed

    Choi, Y-W; Bae, S M; Kim, Y-W; Lee, H N; Kim, Y W; Park, T C; Ro, D Y; Shin, J C; Shin, S J; Seo, J-S; Ahn, W S

    2007-01-01

    Our aim was to identify novel genomic regions of interest and provide highly dynamic range information on correlation between squamous cell cervical carcinoma and its related gene expression patterns by a genome-wide array-based comparative genomic hybridization (array-CGH). We analyzed 15 cases of cervical cancer from KangNam St Mary's Hospital of the Catholic University of Korea. Microdissection assay was performed to obtain DNA samples from paraffin-embedded cervical tissues of cancer as well as of the adjacent normal tissues. The bacterial artificial chromosome (BAC) array used in this study consisted of 1440 human BACs and the space among the clones was 2.08 Mb. All the 15 cases of cervical cancer showed the differential changes of the cervical cancer-associated genetic alterations. The analysis limit of average gains and losses was 53%. A significant positive correlation was found in 8q24.3, 1p36.32, 3q27.1, 7p21.1, 11q13.1, and 3p14.2 changes through the cervical carcinogenesis. The regions of high level of gain were 1p36.33-1p36.32, 8q24.3, 16p13.3, 1p36.33, 3q27.1, and 7p21.1. And the regions of homozygous loss were 2q12.1, 22q11.21, 3p14.2, 6q24.3, 7p15.2, and 11q25. In the high level of gain regions, GSDMDC1, RECQL4, TP73, ABCF3, ALG3, HDAC9, ESRRA, and RPS6KA4 were significantly correlated with cervical cancer. The genes encoded by frequently lost clones were PTPRG, GRM7, ZDHHC3, EXOSC7, LRP1B, and NR3C2. Therefore, array-CGH analyses showed that specific genomic alterations were maintained in cervical cancer that were critical to the malignant phenotype and may give a chance to find out possible target genes present in the gained or lost clones.

  19. Multipath propagation of low-frequency radio waves inferred from high-resolution array analysis

    NASA Astrophysics Data System (ADS)

    Füllekrug, Martin; Smith, Nathan; Mezentsev, Andrew; Watson, Robert; Astin, Ivan; Gaffet, Stéphane; Evans, Adrian; Rycroft, Michael

    2015-11-01

    The low-frequency radio sky shows the locations of electromagnetic radio sources with a characteristic dilution of precision. Here we report a thorough high-resolution analysis of radio waves from low-frequency (˜20-150 kHz) radio communication transmitters which are recorded with a small aperture array of radio receivers during the day. It is found that the observed dilution of precision results from the array geometry of the radio receivers, a birefringent wave propagation, and the correlated multipath propagation of low-frequency radio waves. The influence of the array geometry on the dilution of precision is reduced by taking into account the impulse response of the array. This procedure reveals for the very first time the splitting of one single radio source into two distinct source locations separated by ˜0.2°-1.9° which result from a birefringent wave propagation. The two locations are yet more clearly identified by using the polarity of the modulated wave number vectors of the radio waves. This polarity is also used to quantify the dilution of precision arising from correlated multipath propagation which is discriminated against wave number fluctuations arising from the timing accuracy of the radio receivers. It is found that ˜69% of the wave number variability is of natural origin and ˜31% originates from the timing accuracy of the receivers. The wave number variability from correlated multipath propagation results in a standard deviation ˜2-8% relative to the source location. This compact measurement of correlated multipath propagation is used to characterize the uncertainty of source locations in the radio sky. The identification of correlated multipath propagation strongly suggests the existence of very fast processes acting on time scales <1 ms in the D region ionosphere with physically meaningful effects on low-frequency radio wave propagation. This important result has implications for practical applications in that the observed multipath

  20. Dynamic arrays for fast, efficient, data manipulation during image analysis: a new software tool for exploratory data analysis.

    PubMed

    Breen, E J; Joss, G H; Williams, K L

    1992-03-01

    Memory reallocation is used to construct a run-time data structure for fast/efficient storage of information during collection and analysis. The data structure presented uses dynamic memory but does not require the use of pointers to link nodes of information together. It allows for simple and efficient access to data via array indexing rather than through the use of lists or tree structures and it provides flexibility for competing storage requirements that are determined dynamically. The data structure is developed in the C programming language and a suite of ANSI standard C subroutines that make up a run-time data structure management system is provided.

  1. Seismic analysis of the 4-meter telescope SST-GATE for the Cherenkov Telescope Array

    NASA Astrophysics Data System (ADS)

    Dournaux, Jean-Laurent; Huet, Jean-Michel; Amans, Jean-Philippe; Dumas, Delphine; Blake, Simon; Sol, Hélène

    2014-07-01

    The Cherenkov Telescope Array (CTA) project aims to create a next generation Very High Energy (VHE)γ-ray telescope array, devoted to the observation in a wide band of energy, from a few tens of GeV to more than 100 TeV. Two sites are foreseen to view the whole sky, with the main one in the Southern Hemisphere where about 100 telescopes of three different classes, related to the specific energy region to be investigated, will be installed. Among these, the Small Size class of Telescopes, SSTs, are 4-meter telescopes and are devoted to the highest energy region, from 1 TeV to beyond 100 TeV. Some of these sites considered for CTA exhibit strong seismic constraints. At the Observatoire de Paris, we have designed a prototype of a Small Size Telescope named SST-GATE, based on the dual-mirror Schwarzschild-Couder optical formula, which was never before implemented in the design of a Cherenkov telescope. The integration of this telescope on the site of the Observatoire de Paris is currently in progress. Technical solutions exist in the literature to protect structures from dynamic loads caused by earthquakes without increasing the mass and cost of the structure. This paper presents a state of the art of these techniques by keeping in mind that the operational performance of the telescope should not be compromised. The preliminary seismic analysis of SSTGATE performed by the finite element method is described before.

  2. Computationally efficient analysis of extraordinary optical transmission through infinite and truncated subwavelength hole arrays

    NASA Astrophysics Data System (ADS)

    Camacho, Miguel; Boix, Rafael R.; Medina, Francisco

    2016-06-01

    The authors present a computationally efficient technique for the analysis of extraordinary transmission through both infinite and truncated periodic arrays of slots in perfect conductor screens of negligible thickness. An integral equation is obtained for the tangential electric field in the slots both in the infinite case and in the truncated case. The unknown functions are expressed as linear combinations of known basis functions, and the unknown weight coefficients are determined by means of Galerkin's method. The coefficients of Galerkin's matrix are obtained in the spatial domain in terms of double finite integrals containing the Green's functions (which, in the infinite case, is efficiently computed by means of Ewald's method) times cross-correlations between both the basis functions and their divergences. The computation in the spatial domain is an efficient alternative to the direct computation in the spectral domain since this latter approach involves the determination of either slowly convergent double infinite summations (infinite case) or slowly convergent double infinite integrals (truncated case). The results obtained are validated by means of commercial software, and it is found that the integral equation technique presented in this paper is at least two orders of magnitude faster than commercial software for a similar accuracy. It is also shown that the phenomena related to periodicity such as extraordinary transmission and Wood's anomaly start to appear in the truncated case for arrays with more than 100 (10 ×10 ) slots.

  3. FPGA implementation of a 32x32 autocorrelator array for analysis of fast image series.

    PubMed

    Buchholz, Jan; Krieger, Jan Wolfgang; Mocsár, Gábor; Kreith, Balázs; Charbon, Edoardo; Vámosi, György; Kebschull, Udo; Langowski, Jörg

    2012-07-30

    With the evolving technology in CMOS integration, new classes of 2D-imaging detectors have recently become available. In particular, single photon avalanche diode (SPAD) arrays allow detection of single photons at high acquisition rates (≥ 100 kfps), which is about two orders of magnitude higher than with currently available cameras. Here we demonstrate the use of a SPAD array for imaging fluorescence correlation spectroscopy (imFCS), a tool to create 2D maps of the dynamics of fluorescent molecules inside living cells. Time-dependent fluorescence fluctuations, due to fluorophores entering and leaving the observed pixels, are evaluated by means of autocorrelation analysis. The multi-τ correlation algorithm is an appropriate choice, as it does not rely on the full data set to be held in memory. Thus, this algorithm can be efficiently implemented in custom logic. We describe a new implementation for massively parallel multi-τ correlation hardware. Our current implementation can calculate 1024 correlation functions at a resolution of 10 μs in real-time and therefore correlate real-time image streams from high speed single photon cameras with thousands of pixels.

  4. Large angle magnetic suspension test fixture

    NASA Technical Reports Server (NTRS)

    Britcher, Colin P. (Principal Investigator); Huang, Jen-Kuang (Principal Investigator)

    1996-01-01

    Good progress is being made in several major areas. These include eddy current modelling and analysis, design optimization methods, wind tunnel Magnetic Suspension and Balance Systems (MSBS), payload pointing and vibration isolation systems, and system identification. In addition, another successful International Symposium has been completed, with the Proceedings being printed at the time of writing. These activities continue current work under this Grant and extend previous work on magnetic suspension systems and devices in the Guidance and Control Branch and will permit the demonstration of several new developments in the field of magnetic suspension technology.

  5. Modeling and analysis of the EDS Maglev system with the Halbach magnet array

    NASA Astrophysics Data System (ADS)

    Ko, Wonsuk

    The magnetic field analysis based on the wavelet transform is performed. The Halbach array magnetic field analysis has been studied using many methods such as magnetic scalar potential, magnetic vector potential, Fourier analysis and Finite Element Methods. But these analyses cannot identify a transient oscillation at the beginning stage of levitation. The wavelet transform is used for analyzing the transient oscillatory response of an EDS Maglev system. The proposed scheme explains the under-damped dynamics that results from the cradle's dynamic response to the irregular distribution of the magnetic field. It suggests this EDS Maglev system that responds to a vertical repulsive force could be subject to such instability at the beginning stage of a low levitation height. The proposed method is useful in analyzing instabilities at the beginning stage of levitation height. A controller for the EDS maglev system with the Halbach array magnet is designed for the beginning stage of levitation and after reaching the defined levitation height. To design a controller for the EDS system, two different stages are suggested. Before the object reaches a stable position and after it has reached a stable position. A stable position can be referred to as a nominal height. The former is the stage I and the latter is the stage II. At the stage I, to achieve a nominal height the robust controller is investigated. At the stage II, both translational and rotational motions are considered for the control design. To maintain system stability, damping control as well as LQR control are performed. The proposed method is helpful to understand system dynamics and achieve system stability.

  6. A study on the impact of hydroxypropyl methylcellulose on the viscosity of PEG melt suspensions using surface plots and principal component analysis.

    PubMed

    Oh, Ching Mien; Heng, Paul Wan Sia; Chan, Lai Wah

    2015-04-01

    An understanding of the rheological behaviour of polymer melt suspensions is crucial in pharmaceutical manufacturing, especially when processed by spray congealing or melt extruding. However, a detailed comparison of the viscosities at each and every temperature and concentration between the various grades of adjuvants in the formulation will be tedious and time-consuming. Therefore, the statistical method, principal component analysis (PCA), was explored in this study. The composite formulations comprising polyethylene glycol (PEG) 3350 and hydroxypropyl methylcellulose (HPMC) of ten different grades (K100 LV, K4M, K15M, K100M, E15 LV, E50 LV, E4M, F50 LV, F4M and Methocel VLV) at various concentrations were prepared and their viscosities at different temperatures determined. Surface plots showed that concentration of HPMC had a greater effect on the viscosity compared to temperature. Particle size and size distribution of HPMC played an important role in the viscosity of melt suspensions. Smaller particles led to a greater viscosity than larger particles. PCA was used to evaluate formulations of different viscosities. The complex viscosity profiles of the various formulations containing HPMC were successfully classified into three clusters of low, moderate and high viscosity. Formulations within each group showed similar viscosities despite differences in grade or concentration of HPMC. Formulations in the low viscosity cluster were found to be sprayable. PCA was able to differentiate the complex viscosity profiles of different formulations containing HPMC in an efficient and time-saving manner and provided an excellent visualisation of the data.

  7. Comparative Proteomic Analysis of Cultured Suspension Cells of the Halophyte Halogeton glomeratus by iTRAQ Provides Insights into Response Mechanisms to Salt Stress

    PubMed Central

    Wang, Juncheng; Yao, Lirong; Li, Baochun; Meng, Yaxiong; Ma, Xiaole; Lai, Yong; Si, Erjing; Ren, Panrong; Yang, Ke; Shang, Xunwu; Wang, Huajun

    2016-01-01

    Soil salinity severely threatens land use capability and crop yields worldwide. An analysis of the molecular mechanisms of salt tolerance in halophytes will contribute to the development of salt-tolerant crops. In this study, a combination of physiological characteristics and iTRAQ-based proteomic approaches was conducted to investigate the molecular mechanisms underlying the salt response of suspension cell cultures of halophytic Halogeton glomeratus. These cells showed halophytic growth responses comparable to those of the whole plant. In total, 97 up-regulated proteins and 192 down-regulated proteins were identified as common to both 200 and 400 mM NaCl concentration treatments. Such salinity responsive proteins were mainly involved in energy, carbohydrate metabolism, stress defense, protein metabolism, signal transduction, cell growth, and cytoskeleton metabolism. Effective regulatory protein expression related to energy, stress defense, and carbohydrate metabolism play important roles in the salt-tolerance of H. glomeratus suspension cell cultures. However, known proteins regulating Na+ efflux from the cytoplasm and its compartmentalization into the vacuole did not change significantly under salinity stress suggesting our existing knowledge concerning Na+ extrusion and compartmentalization in halophytes needs to be evaluated further. Such data are discussed in the context of our current understandings of the mechanisms involved in the salinity response of the halophyte, H. glomeratus. PMID:26904073

  8. Absorption and scattering of light by suspensions of cells and subcellular particles: an analysis in terms of Kramers-Kronig relations.

    PubMed

    Naqvi, K Razi; Merzlyak, M N; Melø, T B

    2004-01-01

    An analysis of light scattering from suspensions of pigmented cells and particles is undertaken, and a practicable method, requiring only the experimentally measured extinction spectra, is documented. The analysis is based on two premises: Absorption and selective scattering from a single pool of pigments satisfy the Kramers-Kronig relations, which imply that one can be derived from the other; pigment-free domains contribute only nonselective scattering. This approach succeeds in simulating the spectra of many systems (human erythrocytes, chloroplasts and subchloroplast particles, algal cells) over a wide spectral range. Other, less favourable, cases are also examined, but even here the apparent discrepancy between theory adn experiment provides some clues that cannot be gleaned from absorption data alone.

  9. An Array of Qualitative Data Analysis Tools: A Call for Data Analysis Triangulation

    ERIC Educational Resources Information Center

    Leech, Nancy L.; Onwuegbuzie, Anthony J.

    2007-01-01

    One of the most important steps in the qualitative research process is analysis of data. The purpose of this article is to provide elements for understanding multiple types of qualitative data analysis techniques available and the importance of utilizing more than one type of analysis, thus utilizing data analysis triangulation, in order to…

  10. Mean kinetic energy transport and event classification in a model wind turbine array versus an array of porous disks: Energy budget and octant analysis

    NASA Astrophysics Data System (ADS)

    Camp, Elizabeth H.; Cal, Raúl Bayoán

    2016-08-01

    An array of model rotating wind turbines is compared experimentally to an array of static porous disks in order to quantify the similarities and differences in the mean kinetic energy transport within the wakes produced in these two cases. Stereo particle image velocimetry measurements are done in a wind tunnel bracketing the center turbine in the fourth row of a 4 ×3 array of model turbines. Equivalent sets of rotors and porous disks are created by matching their respective induction factors. The primary difference in the mean velocity components is found in the spanwise mean velocity component, which is as much as 190% different between the rotor and disk case. Horizontal averages of mean kinetic energy transport terms in the region where rotation is most important show percent differences in the range 3%-41%, which decrease to 1%-6% at streamwise coordinates where rotation is less important. Octant analysis is performed on the most significant term related to vertical mean kinetic energy flux u'v' ¯U . The average percent difference between corresponding octants is as much as 68% different in the near wake and as much as 17% different in the far wake. Furthermore, octant analysis elucidates the three-dimensional nature of sweeps and ejections in the near wake of the rotor case. Together, these results imply that a stationary porous disk adequately represents the mean kinetic energy transport of a rotor in the far wake where rotation is less important, while significant discrepancies exist at streamwise locations where rotation is a key phenomenon. This comparison has implications in the use of an actuator disk to model the wind turbine rotor in computational simulations specifically for studies where Reynolds stresses, turbulence intensity, or interactions with the atmosphere are of interest.

  11. Modelling a Suspension Bridge.

    ERIC Educational Resources Information Center

    Rawlins, Phil

    1991-01-01

    The quadratic function can be modeled in real life by a suspension bridge that supports a uniform weight. This activity uses concrete models and computer generated graphs to discover the mathematical model of the shape of the main cable of a suspension bridge. (MDH)

  12. Research on School Suspension

    ERIC Educational Resources Information Center

    Iselin, Anne-Marie

    2010-01-01

    Schools across the nation report increases in the use of punitive disciplinary methods (e.g., suspension). The need for these disciplinary practices to address serious student misconduct is undisputed. What research has questioned is why some students seem to be suspended more often than others, what effects suspension has on students, and whether…

  13. Tandem array of nanoelectronic readers embedded coplanar to a fluidic nanochannel for correlated single biopolymer analysis

    PubMed Central

    Lesser-Rojas, Leonardo; Sriram, K. K.; Liao, Kuo-Tang; Lai, Shui-Chin; Kuo, Pai-Chia; Chu, Ming-Lee; Chou, Chia-Fu

    2014-01-01

    We have developed a two-step electron-beam lithography process to fabricate a tandem array of three pairs of tip-like gold nanoelectronic detectors with electrode gap size as small as 9 nm, embedded in a coplanar fashion to 60 nm deep, 100 nm wide, and up to 150 μm long nanochannels coupled to a world-micro-nanofluidic interface for easy sample introduction. Experimental tests with a sealed device using DNA-protein complexes demonstrate the coplanarity of the nanoelectrodes to the nanochannel surface. Further, this device could improve transverse current detection by correlated time-of-flight measurements of translocating samples, and serve as an autocalibrated velocimeter and nanoscale tandem Coulter counters for single molecule analysis of heterogeneous samples. PMID:24753731

  14. Numerical analysis of the beam quality and spectrum of wavelength-beam-combined laser diode arrays

    NASA Astrophysics Data System (ADS)

    Tang, Xuan; Wang, Xiao-Jun; Ke, Wei-Wei

    2015-02-01

    In this paper, a numerical model is presented to simulation the performance of the wavelength-beam-combined laser diode arrays (LDA) system. The eigen mode expansion method is used to describe the two-dimensional optical amplification and the strength of field feedback of external cavity. To describe the mode competition in laser diodes, the gain saturation effect is considered. The two-dimension distributions of the carrier concentration, recombination rates, and optical gain are calculated for solving the laser dynamic equation. The Fresnel integration, grating equation and mode overlap integration are used to obtain the feedback coefficient of extent cavity diffraction. Quantum noise is considered to evaluate the spectral linewidth of semiconductor laser. Based on the numerical model, the impact of the mutual optical feedback on the beam quality and spectrum of the LDA is present and analysis.

  15. Compartmentalized microchannel array for high-throughput analysis of single cell polarized growth and dynamics

    PubMed Central

    Geng, Tao; Bredeweg, Erin L.; Szymanski, Craig J.; Liu, Bingwen; Baker, Scott E.; Orr, Galya; Evans, James E.; Kelly, Ryan T.

    2015-01-01

    Interrogating polarized growth is technologically challenging due to extensive cellular branching and uncontrollable environmental conditions in conventional assays. Here we present a robust and high-performance microfluidic system that enables observations of polarized growth with enhanced temporal and spatial control over prolonged periods. The system has built-in tunability and versatility to accommodate a variety of scientific applications requiring precisely controlled environments. Using the model filamentous fungus, Neurospora crassa, our microfluidic system enabled direct visualization and analysis of cellular heterogeneity in a clonal fungal cell population, nuclear distribution and dynamics at the subhyphal level, and quantitative dynamics of gene expression with single hyphal compartment resolution in response to carbon source starvation and exchange. Although the microfluidic device is demonstrated on filamentous fungi, the technology is immediately extensible to a wide array of other biosystems that exhibit similar polarized cell growth, with applications ranging from bioenergy production to human health. PMID:26530004

  16. Tandem array of nanoelectronic readers embedded coplanar to a fluidic nanochannel for correlated single biopolymer analysis.

    PubMed

    Lesser-Rojas, Leonardo; Sriram, K K; Liao, Kuo-Tang; Lai, Shui-Chin; Kuo, Pai-Chia; Chu, Ming-Lee; Chou, Chia-Fu

    2014-01-01

    We have developed a two-step electron-beam lithography process to fabricate a tandem array of three pairs of tip-like gold nanoelectronic detectors with electrode gap size as small as 9 nm, embedded in a coplanar fashion to 60 nm deep, 100 nm wide, and up to 150 μm long nanochannels coupled to a world-micro-nanofluidic interface for easy sample introduction. Experimental tests with a sealed device using DNA-protein complexes demonstrate the coplanarity of the nanoelectrodes to the nanochannel surface. Further, this device could improve transverse current detection by correlated time-of-flight measurements of translocating samples, and serve as an autocalibrated velocimeter and nanoscale tandem Coulter counters for single molecule analysis of heterogeneous samples.

  17. Compartmentalized microchannel array for high-throughput analysis of single cell polarized growth and dynamics

    DOE PAGESBeta

    Geng, Tao; Bredeweg, Erin L.; Szymanski, Craig J.; Liu, Bingwen; Baker, Scott E.; Orr, Galya; Evans, James E.; Kelly, Ryan T.

    2015-11-04

    Here, interrogating polarized growth is technologically challenging due to extensive cellular branching and uncontrollable environmental conditions in conventional assays. Here we present a robust and high-performance microfluidic system that enables observations of polarized growth with enhanced temporal and spatial control over prolonged periods. The system has built-in tunability and versatility to accommodate a variety of science applications requiring precisely controlled environments. Using the model filamentous fungus, Neurospora crassa, this microfluidic system enabled direct visualization and analysis of cellular heterogeneity in a clonal fungal cell population, nuclear distribution and dynamics at the subhyphal level, and quantitative dynamics of gene expression withmore » single hyphal compartment resolution in response to carbon source starvation and exchange experiments. Although the microfluidic device is demonstrated on filamentous fungi, our technology is immediately extensible to a wide array of other biosystems that exhibit similar polarized cell growth with applications ranging from bioenergy production to human health.« less

  18. Compartmentalized microchannel array for high-throughput analysis of single cell polarized growth and dynamics

    SciTech Connect

    Geng, Tao; Bredeweg, Erin L.; Szymanski, Craig J.; Liu, Bingwen; Baker, Scott E.; Orr, Galya; Evans, James E.; Kelly, Ryan T.

    2015-11-04

    Here, interrogating polarized growth is technologically challenging due to extensive cellular branching and uncontrollable environmental conditions in conventional assays. Here we present a robust and high-performance microfluidic system that enables observations of polarized growth with enhanced temporal and spatial control over prolonged periods. The system has built-in tunability and versatility to accommodate a variety of science applications requiring precisely controlled environments. Using the model filamentous fungus, Neurospora crassa, this microfluidic system enabled direct visualization and analysis of cellular heterogeneity in a clonal fungal cell population, nuclear distribution and dynamics at the subhyphal level, and quantitative dynamics of gene expression with single hyphal compartment resolution in response to carbon source starvation and exchange experiments. Although the microfluidic device is demonstrated on filamentous fungi, our technology is immediately extensible to a wide array of other biosystems that exhibit similar polarized cell growth with applications ranging from bioenergy production to human health.

  19. The strong ground motion in Mexico City: array and borehole data analysis.

    NASA Astrophysics Data System (ADS)

    Roullé, A.; Chávez-García, F. J.

    2003-04-01

    Site response at Mexico City has been intensively studied for the last 15 years, since the disastrous 1985 earthquakes. After those events, more than 100 accelerographs were installed, and their data have been extremely useful in quantifying amplification and in the subsequent upgrading of the building code. However, detailed analysis of the wavefield has been hampered by the lack of absolute time in the records and the large spacing between stations in terms of dominant wavelengths. In 2001, thanks to the support of CONACYT, Mexico, a new dense accelerographic network was installed in the lake bed zone of Mexico City. The entire network, including an existing network of 3 surface and 2 borehole stations operated by CENAPRED, consists in 12 surface and 4 borehole stations (at 30, 102 and 50 meters). Each station has a 18 bits recorder and a GPS receiver so that the complete network is a 3D array with absolute time. The main objective of this array is to provide data that can help us to better understand the wavefield that propagates in Mexico City during large earthquakes. Last year, a small event of magnitude 6.0 was partially recorded by 6 of the 12 surface stations and all the borehole stations. We analysed the surface data using different array processing techniques such as f-k methods and MUSIC algorithm and the borehole ones using a cross-correlation method. For periods inferior to the site resonance period, the soft clay layer with very low propagation velocities (less than 500 m/s) and a possible multipathing rule the wavefield pattern. For the large period range, the dominant surface wave comes from the epicentral direction and propagates with a quicker velocity (more than 1500 m/s) that corresponds to the velocity of deep layers. The analysis of borehole data shows the presence of different quick wavetrains in the short period range that could correspond to the first harmonic modes of Rayleigh waves. To complete this study, four others events recorded in

  20. Thermal Analysis and Correlation of the Mars Odyssey Spacecraft's Solar Array During Aerobraking Operations

    NASA Technical Reports Server (NTRS)

    Dec, John A.; Gasbarre, Joseph F.; George, Benjamin E.

    2002-01-01

    The Mars Odyssey spacecraft made use of multipass aerobraking to gradually reduce its orbit period from a highly elliptical insertion orbit to its final science orbit. Aerobraking operations provided an opportunity to apply advanced thermal analysis techniques to predict the temperature of the spacecraft's solar array for each drag pass. Odyssey telemetry data was used to correlate the thermal model. The thermal analysis was tightly coupled to the flight mechanics, aerodynamics, and atmospheric modeling efforts being performed during operations. Specifically, the thermal analysis predictions required a calculation of the spacecraft's velocity relative to the atmosphere, a prediction of the atmospheric density, and a prediction of the heat transfer coefficients due to aerodynamic heating. Temperature correlations were performed by comparing predicted temperatures of the thermocouples to the actual thermocouple readings from the spacecraft. Time histories of the spacecraft relative velocity, atmospheric density, and heat transfer coefficients, calculated using flight accelerometer and quaternion data, were used to calculate the aerodynamic heating. During aerobraking operations, the correlations were used to continually update the thermal model, thus increasing confidence in the predictions. This paper describes the thermal analysis that was performed and presents the correlations to the flight data.

  1. In-shoe plantar pressure measurement and analysis system based on fabric pressure sensing array.

    PubMed

    Shu, Lin; Hua, Tao; Wang, Yangyong; Qiao Li, Qiao; Feng, David Dagan; Tao, Xiaoming

    2010-05-01

    Spatial and temporal plantar pressure distributions are important and useful measures in footwear evaluation, athletic training, clinical gait analysis, and pathology foot diagnosis. However, present plantar pressure measurement and analysis systems are more or less uncomfortable to wear and expensive. This paper presents an in-shoe plantar pressure measurement and analysis system based on a textile fabric sensor array, which is soft, light, and has a high-pressure sensitivity and a long service life. The sensors are connected with a soft polymeric board through conductive yarns and integrated into an insole. A stable data acquisition system interfaces with the insole, wirelessly transmits the acquired data to remote receiver through Bluetooth path. Three configuration modes are incorporated to gain connection with desktop, laptop, or smart phone, which can be configured to comfortably work in research laboratories, clinics, sport ground, and other outdoor environments. A real-time display and analysis software is presented to calculate parameters such as mean pressure, peak pressure, center of pressure (COP), and shift speed of COP. Experimental results show that this system has stable performance in both static and dynamic measurements.

  2. [Analysis of the mechanism of intensification of fermentation process using yeast cells in a suspension of high-dispersed oxides].

    PubMed

    Bagatskaya, A N; Mazurenko, R V; Makhno, S N; Gorbik, P P

    2014-01-01

    The differential microcalorimetry was used to explore an influence of particles of silicon dioxide, and also other high-dispersed oxides (0.05% of masses.) in water suspension of yeast cells on intensification of the process of their fermentation in endogenous metabolic conditions. It was shown that intensification of the processes of the vital activity of yeast microorganisms was observed in the specified interval of the concentration of silicon dioxide hydrosol particles. Mechanisms of interaction between SiO2 particles and a surface of a cellular organism, as well as interaction between SiO2 particles and one of metabolism products--carbon dioxide were studied. It was found out, that Al2O3, TiO2 hydrosols also had a stimulating effect, but it is lower compared to that of SiO2.

  3. Structure of Plant Cell Walls : XVIII. An Analysis of the Extracellular Polysaccharides of Suspension-Cultured Sycamore Cells.

    PubMed

    Stevenson, T T; McNeil, M; Darvill, A G; Albersheim, P

    1986-04-01

    The water-soluble polysaccharides (SEPS) secreted into the medium by suspension-cultured sycamore cells were examined to determine whether the polysaccharides were the same as those present in the walls of sycamore cells. The SEPS were made more amenable to fractionation by treatment with a highly purified alpha-1,4-endopolygalacturonase (EPG). The EPG-treated SEPS were fractionated by anion-exchange and gelpermeation chromatography. The following polysaccharides were found: xyloglucan, arabinoxylan, at least two arabinogalactans, a rhamnogalacturonan-II-like polysaccharide, and a polygalacturonic acid-rich polysaccharide. The oligogalacturonide fragments expected from EPG-digested homogalacturonan were also identified. Evidence was obtained for the presence of a rhamnogalacturonan-I-like polysaccharide. All of the above polysaccharides have been isolated from or are believed to be present in sycamore cell walls. Furthermore, all of the noncellulosic polysaccharides known to be present in sycamore cell-walls appear to be present in the SEPS.

  4. Induction and analysis of the alkaloid mitragynine content of a Mitragyna speciosa suspension culture system upon elicitation and precursor feeding.

    PubMed

    Mohamad Zuldin, Nor Nahazima; Said, Ikram Md; Mohd Noor, Normah; Zainal, Zamri; Jin Kiat, Chew; Ismail, Ismanizan

    2013-01-01

    This study aimed to determine the effects of different concentrations and combinations of the phytohormones 2,4-dichlorophenoxy acetic acid (2,4-D), kinetin, 6-benzylaminopurine (BAP), and 1-naphthaleneacetic acid (NAA) on callus induction and to demonstrate the role of elicitors and exogenous precursors on the production of mitragynine in a Mitragyna speciosa suspension culture. The best callus induction was achieved from petiole explants cultured on WPM that was supplemented with 4 mg L⁻¹ 2,4-D (70.83%). Calli were transferred to liquid media and agitated on rotary shakers to establish Mitragyna speciosa cell suspension cultures. The optimum settled cell volume was achieved in the presence of WPM that contained 3 mg L⁻¹ 2,4-D and 3% sucrose (9.47 ± 0.4667 mL). The treatment of cultures with different concentrations of yeast extract and salicylic acid for different inoculation periods revealed that the highest mitragynine content as determined by HPLC was achieved from the culture treated with 250 mg L⁻¹ yeast extract (9.275 ± 0.082 mg L⁻¹) that was harvested on day 6 of culturing; salicylic acid showed low mitragynine content in all concentrations used. Tryptophan and loganin were used as exogenous precursors; the highest level of mitragynine production was achieved in cultures treated with 3  μM tryptophan and harvested at 6 days (13.226 ± 1.98 mg L⁻¹). PMID:24065873

  5. Induction and Analysis of the Alkaloid Mitragynine Content of a Mitragyna speciosa Suspension Culture System upon Elicitation and Precursor Feeding

    PubMed Central

    Mohamad Zuldin, Nor Nahazima; Said, Ikram Md.; Mohd Noor, Normah; Zainal, Zamri; Jin Kiat, Chew; Ismail, Ismanizan

    2013-01-01

    This study aimed to determine the effects of different concentrations and combinations of the phytohormones 2,4-dichlorophenoxy acetic acid (2,4-D), kinetin, 6-benzylaminopurine (BAP), and 1-naphthaleneacetic acid (NAA) on callus induction and to demonstrate the role of elicitors and exogenous precursors on the production of mitragynine in a Mitragyna speciosa suspension culture. The best callus induction was achieved from petiole explants cultured on WPM that was supplemented with 4 mg L−1 2, 4-D (70.83%). Calli were transferred to liquid media and agitated on rotary shakers to establish Mitragyna speciosa cell suspension cultures. The optimum settled cell volume was achieved in the presence of WPM that contained 3 mg L−1 2,4-D and 3% sucrose (9.47 ± 0.4667 mL). The treatment of cultures with different concentrations of yeast extract and salicylic acid for different inoculation periods revealed that the highest mitragynine content as determined by HPLC was achieved from the culture treated with 250 mg L−1 yeast extract (9.275 ± 0.082 mg L−1) that was harvested on day 6 of culturing; salicylic acid showed low mitragynine content in all concentrations used. Tryptophan and loganin were used as exogenous precursors; the highest level of mitragynine production was achieved in cultures treated with 3 μM tryptophan and harvested at 6 days (13.226 ± 1.98 mg L−1). PMID:24065873

  6. High-Performance Single Cell Genetic Analysis Using Microfluidic Emulsion Generator Arrays

    PubMed Central

    Zeng, Yong; Novak, Richard; Shuga, Joe; Smith, Martyn T.; Mathies, Richard A.

    2010-01-01

    High-throughput genetic and phenotypic analysis at the single cell level is critical to advance our understanding of the molecular mechanisms underlying cellular function and dysfunction. Here we describe a high-performance single cell genetic analysis (SCGA) technique that combines high-throughput microfluidic emulsion generation with single cell multiplex PCR. Microfabricated emulsion generator array (MEGA) devices containing 4, 32 and 96 channels are developed to confer a flexible capability of generating up to 3.4 × 106 nanoliter-volume droplets per hour. Hybrid glass-polydimethylsiloxane diaphragm micropumps integrated into the MEGA chips afford uniform droplet formation, controlled generation frequency, and effective transportation and encapsulation of primer functionalized microbeads and cells. A multiplex single cell PCR method is developed to detect and quantify both wild type and mutant/pathogenic cells. In this method, microbeads functionalized with multiple forward primers targeting specific genes from different cell types are used for solid-phase PCR in droplets. Following PCR, the droplets are lysed, the beads are pooled and rapidly analyzed by multi-color flow cytometry. Using E. coli bacterial cells as a model, we show that this technique enables digital detection of pathogenic E. coli O157 cells in a high background of normal K12 cells, with a detection limit on the order of 1:105. This result demonstrates that multiplex SCGA is a promising tool for high-throughput quantitative digital analysis of genetic variation in complex populations. PMID:20192178

  7. Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis

    DOE PAGESBeta

    Gao, Wei; Emaminejad, Sam; Nyein, Hnin Yin Yin; Challa, Samyuktha; Chen, Kevin; Peck, Austin; Fahad, Hossain M.; Ota, Hiroki; Shiraki, Hiroshi; Kiriya, Daisuke; et al

    2016-01-27

    We report that wearable sensor technologies are essential to the realization of personalized medicine through continuously monitoring an individual’s state of health. Sampling human sweat, which is rich in physiological information13, could enable non-invasive monitoring. Previously reported sweat-based and other noninvasive biosensors either can only monitor a single analyte at a time or lack on-site signal processing circuitry and sensor calibration mechanisms for accurate analysis of the physiological state14–18. Given the complexity of sweat secretion, simultaneous and multiplexed screening of target biomarkers is critical and requires full system integration to ensure the accuracy of measurements. Here we present a mechanicallymore » flexible and fully integrated (that is, no external analysis is needed) sensor array for multiplexed in situ perspiration analysis, which simultaneously and selectively measures sweat metabolites (such as glucose and lactate) and electrolytes (such as sodium and potassium ions), as well as the skin temperature (to calibrate the response of the sensors). Lastly, our work bridges the technological gap between signal transduction, conditioning (amplification and filtering), processing and wireless transmission in wearable biosensors by merging plasticbased sensors that interface with the skin with silicon integrated circuits consolidated on a flexible circuit board for complex signal processing.« less

  8. Shear Force at the Cell-Matrix Interface: Enhanced Analysis for Microfabricated Post Array Detectors

    PubMed Central

    Lemmon, Christopher A.; Sniadecki, Nathan J.; Ruiz, Sami Alom; Tan, John L.; Romer, Lewis H.; Chen, Christopher S.

    2006-01-01

    The interplay of mechanical forces between the extracellular environment and the cytoskeleton drives development, repair, and senescence in many tissues. Quantitative definition of these forces is a vital step in understanding cellular mechanosensing. Microfabricated post array detectors (mPADs) provide direct measurements of cell-generated forces during cell adhesion to extracellular matrix. A new approach to mPAD post labeling, volumetric imaging, and an analysis of post bending mechanics determined that cells apply shear forces and not point moments at the matrix interface. In addition, these forces could be accurately resolved from post deflections by using images of post tops and bases. Image analysis tools were then developed to increase the precision and throughput of post centroid location. These studies resulted in an improved method of force measurement with broad applicability and concise execution using a fully automated force analysis system. The new method measures cell-generated forces with less than 5%error and less than 90 seconds of computational time. Using this approach, we demonstrated direct and distinct relationships between cellular traction force and spread cell surface area for fibroblasts, endothelial cells, epithelial cells and smooth muscle cells. PMID:16708468

  9. Analysis of Reverse Phase Protein Array Data: From Experimental Design towards Targeted Biomarker Discovery

    PubMed Central

    Wachter, Astrid; Bernhardt, Stephan; Beissbarth, Tim; Korf, Ulrike

    2015-01-01

    Mastering the systematic analysis of tumor tissues on a large scale has long been a technical challenge for proteomics. In 2001, reverse phase protein arrays (RPPA) were added to the repertoire of existing immunoassays, which, for the first time, allowed a profiling of minute amounts of tumor lysates even after microdissection. A characteristic feature of RPPA is its outstanding sample capacity permitting the analysis of thousands of samples in parallel as a routine task. Until today, the RPPA approach has matured to a robust and highly sensitive high-throughput platform, which is ideally suited for biomarker discovery. Concomitant with technical advancements, new bioinformatic tools were developed for data normalization and data analysis as outlined in detail in this review. Furthermore, biomarker signatures obtained by different RPPA screens were compared with another or with that obtained by other proteomic formats, if possible. Options for overcoming the downside of RPPA, which is the need to steadily validate new antibody batches, will be discussed. Finally, a debate on using RPPA to advance personalized medicine will conclude this article. PMID:27600238

  10. Evaluation of Flexible Array Station Performance and Ambient Noise Analysis Using 500 Days of Continuous Recordings

    NASA Astrophysics Data System (ADS)

    Alvarez, M. G.; Anderson, K.; Arias-Dotson, E.; Fowler, J.; Woodward, R.

    2008-12-01

    Within the NSF funded EarthScope USArray program, the Flexible Array (FA) is a pool of campaign seismic instruments for Principal Investigator-driven studies to augment the Transportable Array footprint in imaging key geophysical targets at higher resolution. In this study we evaluate the performance of FA stations using data recorded from the EarthScope CAFÉ experiment in western Washington. Using this unique data set, we create a reference point on how well portable broadband stations perform for an extended continuous period of over 500 days (150:2006 - 50:2008) . All instrumentation that comprise the CAFE experiment is essentially new, of the same type and deployed using a uniform installation technique. The performance of 60 stations is analyzed; 46 stations are broadband, equipped with Guralp CMG 3T and Reftek R130's, the remainder equipped with short period Guralp CMG 40T1Hz and the same data acquisition system. The information used for this evaluation is derived from three sources; detailed field service notes kindly provided by the PI's (Ken Creager, Stephane Rondenay, Geoff Abers), data reports from the IRIS Data Management Center, and the actual time series data. The data return (based on data archived at the DMC w/o any problems) for this experiment is calculated to be 94.5% . The various failures through time are segregated into logical categories where trends in deployment techniques and equipment failures are quantified. Using McNamara statistical analysis to characterize background seismic noise, probability density functions were computed for 25 CAFE stations spanning over 500 days of recording beginning in mid 2006. Results from each station were then combined to produce a network wide characterization of the background noise level. For the same time period, PSD's for 35 nearby Transportable Array stations were also computed and combined into a single system wide PSD. Both installation types perform remarkable well with some differences being

  11. Surface-wave analysis and its application to determining crustal and mantle structure beneath regional arrays

    NASA Astrophysics Data System (ADS)

    Jin, Ge

    We develop several new techniques to better retrieve Earth's structure by analyzing seismic surface waves. These techniques are applied in regional studies to understand a variety of tectonic structures and geodynamic processes in Earth's crust and upper mantle. We create an automated method to retrieve surface-wave phase velocities using dense seismic arrays. The method is based on the notion of using cross-correlation to measure phase variations between nearby stations. Frequency-dependent apparent phase velocities are inverted from the phase-variation measurements via the Eikonal equation. The multi-pathing interference is corrected using amplitude measurements via the Helmholtz equation. The coherence between nearby-station waveforms, together with other data-selection criteria, helps to automate the entire process. We build up the Automated Surface-Wave Measuring System (ASWMS) that retrieves structural phase velocity directly from raw seismic waveforms for individual earthquakes without human intervention. This system is applied on the broad-band seismic data recorded by the USArray from 2006-2014, and obtain Rayleigh-wave phase-velocity maps at the periods of 20-100~s. In total around half million seismograms from 850 events are processed, generating about 4 million cross-correlation measurements. The maps correlate well with several published studies, including ambient-noise results at high frequency. At all frequencies, a significant contrast in Rayleigh-wave phase velocity between the tectonically active western US and the stable eastern US can be observed, with the phase-velocity variations in the western US being 1-2 times greater. The Love wave phase-velocity maps are also calculated. We find that overtone interference may produce systematic bias for the Love-wave phase-velocity measurements. We apply surface-wave analysis on the data collected by a temporary broad-band seismic array near the D'Entrecasteaux Island (DI), Papua New Guinea. The array

  12. Broadband F-k analysis of array data to identify sources of local scattering

    NASA Astrophysics Data System (ADS)

    Gupta, I. N.; Lynnes, C. S.; Wagner, R. A.

    F-k analyses of short-period recordings of both U.S. and Soviet underground nuclear explosions at the Eskdalemuir (EKA), Scotland array indicate arrivals from a local source about 15 km due northwest of the array. Use of residual seismograms derived by subtracting the beamed record from each array channel confirmed the presence of the same scatterer. The secondary seismic source appears to be short-period surface waves due to the scattering of incident P waves at a nearby deep valley known as Moffat Water, in agreement with Key's (1967) results. Similar analyses of the NORESS (Norway) array data from U.S. and Soviet nuclear shots also indicate secondary arrivals suggesting a local near-surface scatterer about 25-30 km southwest of the array, in the region of Lake Mjosa. Thus, short-aperture array data can be useful in identifying and locating sources of near-receiver scattering.

  13. Preliminary array analysis reveals novel genes regulated by ovarian steroids in the monkey raphe region.

    PubMed

    Reddy, Arubala P; Bethea, Cynthia L

    2005-06-01

    We hypothesize that ovarian hormones may improve serotonin neuron survival. We sought the effect of estradiol (E) and progesterone (P) on novel gene expression in the macaque dorsal raphe region with Affymetrix array analysis. Nine spayed rhesus macaques were treated with either placebo, E or E+P via Silastic implant for 1 month prior to euthanasia (n=3 per treatment). RNA was extracted from a small block of midbrain containing the dorsal raphe and examined on an Agilent Bioanalyzer. The RNA from each monkey was labeled and hybridized to an Affymetrix HG_U95AV Human GeneChip Array. After filtering and sorting, 25 named genes remained that were regulated by E, and 24 named genes remained that were regulated by supplemental P. These genes further sorted into functional categories that would promote neuronal plasticity, transmitter synthesis, and trafficking, as well as reduce apoptosis. The relative abundance of four pivotal genes was examined in all nine animals with quantitative RT-PCR and normalized by glyceraldehyde 3-phosphate dehydrogenase (GAPDH). E+/-P caused a significant threefold reduction in JNK-1 (a pro-apoptosis gene, p<0.007); and a significant sixfold decrease in kynurenine mono-oxygenase (produces neurotoxic quinolones, p<0.05). GABA-A receptor (alpha3 subunit; benzodiazepine site) and E2F1 (interferes with cytokine signaling) were unaffected by E, but increased sevenfold (p<0.02) and fourfold (p<0.009), respectively, upon treatment with P. In summary, subsets of genes related to tissue remodeling or apoptosis were up- or down-regulated by E and P in a tissue block containing the dorsal raphe. These changes could promote cellular resilience in the region where serotonin neurons originate.

  14. Application of a potentiometric sensor array as a technique in sensory analysis.

    PubMed

    Hruskar, M; Major, N; Krpan, M

    2010-04-15

    This paper reports on the application of a potentiometric sensor array used for monitoring changes in probiotic fermented milk during storage, classification of probiotic fermented milk according to flavor and to accurately predict the results from a human sensory panel. For that purpose the potentiometric electronic tongue consisting of seven sensors and an Ag/AgCl reference electrode was used. The samples of plain, strawberry, apple-pear and forest-fruit probiotic fermented milk were stored during 20 days on two different temperatures and monitored by the electronic tongue and the human sensory panel. Various pattern recognition techniques are adapted including multivariate data processing based on principal components analysis (PCA) for monitoring changes occurring in probiotic fermented milk, artificial neural networks (ANN) for the classification of probiotic fermented milk during storage, partial least square regression (PLS) and artificial neural networks (ANN) to estimate and predict the sensory panel evaluation results. The highest correct classification percentage (97%) was obtained for plain probiotic fermented milk and the lowest (87%) for apple-pear flavored probiotic fermented milk. The highest correlation between the sensor array and the human sensory panel was obtained for the forest-fruit flavored probiotic fermented milk both by using artificial neural networks (0.998) and partial least square regression (0.992). Results from these analyses demonstrate that the electronic tongue can be used to monitor changes in probiotic fermented milk during storage, to classify probiotic fermented milk according to flavor and to predict the sensory characteristics and their relationship to the quality of the probiotic fermented milk measured by consumer.

  15. Analysis of jet-airfoil interaction noise sources by using a microphone array technique

    NASA Astrophysics Data System (ADS)

    Fleury, Vincent; Davy, Renaud

    2016-03-01

    The paper is concerned with the characterization of jet noise sources and jet-airfoil interaction sources by using microphone array data. The measurements were carried-out in the anechoic open test section wind tunnel of Onera, Cepra19. The microphone array technique relies on the convected, Lighthill's and Ffowcs-Williams and Hawkings' acoustic analogy equation. The cross-spectrum of the source term of the analogy equation is sought. It is defined as the optimal solution to a minimal error equation using the measured microphone cross-spectra as reference. This inverse problem is ill-posed yet. A penalty term based on a localization operator is therefore added to improve the recovery of jet noise sources. The analysis of isolated jet noise data in subsonic regime shows the contribution of the conventional mixing noise source in the low frequency range, as expected, and of uniformly distributed, uncorrelated noise sources in the jet flow at higher frequencies. In underexpanded supersonic regime, a shock-associated noise source is clearly identified, too. An additional source is detected in the vicinity of the nozzle exit both in supersonic and subsonic regimes. In the presence of the airfoil, the distribution of the noise sources is deeply modified. In particular, a strong noise source is localized on the flap. For high Strouhal numbers, higher than about 2 (based on the jet mixing velocity and diameter), a significant contribution from the shear-layer near the flap is observed, too. Indications of acoustic reflections on the airfoil are also discerned.

  16. Finite Element Analysis Of Thermal Transients In Multi-Stripe Laser Diode Arrays

    NASA Astrophysics Data System (ADS)

    Lippincott, Wendy L.; Clement, Anne E.

    1989-05-01

    The NASTRAN finite element code was used to simulate the temperature transients in the active area of laser diode arrays caused by driving the array with a pulsed waveform. A ten-stripe multi-quantum-well (MQW) structure was used. The thermal impedance of the array was also determined and compared to experimental values obtained by monitoring the threshold dependance of the device during pulsed and cw operation. The single-stripe diode was also modeled for comparison purposes.

  17. Analysis of Conical Wire Array Z-Pinch Stability with a Center Wire

    SciTech Connect

    Martinez, D.; Presura, R.; Wright, S.; Plechaty, C.; Neff, S.; Wanex, L.; Ampleford, D. J.

    2009-01-21

    Adding a center wire on the axis of a conical wire array produces conditions suitable for studying shear flow stabilization of the Z-pinch. The conical wire array produces and axial plasma flow while the center wire introduces a radial variation of the axial velocity. Experiments of this array configuration were preformed on the 1 MA Zebra Z-pinch generator and showed stabilization of the kink instability when a center wire was present. Comparison with equivalent cylindrical wire arrays indicates that the shear flow stabilization plays a role in the stabilization of the kink instability.

  18. ARRAY OPTIMIZATION FOR TIDAL ENERGY EXTRACTION IN A TIDAL CHANNEL – A NUMERICAL MODELING ANALYSIS

    SciTech Connect

    Yang, Zhaoqing; Wang, Taiping; Copping, Andrea

    2014-04-18

    This paper presents an application of a hydrodynamic model to simulate tidal energy extraction in a tidal dominated estuary in the Pacific Northwest coast. A series of numerical experiments were carried out to simulate tidal energy extraction with different turbine array configurations, including location, spacing and array size. Preliminary model results suggest that array optimization for tidal energy extraction in a real-world site is a very complex process that requires consideration of multiple factors. Numerical models can be used effectively to assist turbine siting and array arrangement in a tidal turbine farm for tidal energy extraction.

  19. ANALYSIS OF CHANGES IN GENE EXPRESSION PATTERNS IN FISH EXPOSED TO NATURAL PHARMACEUTICAL AND ENVIRONMENTAL ESTROGENS USING GENE ARRAYS.

    EPA Science Inventory

    Denslow, N.D., P. Larkin, T.L. Sabo-Attwood, J. Kocerha, K.J. Kroll, M.J. Hemmer and L.C. Folmar. 2004. Analysis of Changes in Gene Expression Patterns in Fish Exposed to Natural, Pharmaceutical and Environmental Estrogens Using Gene Arrays (Abstract). Mar. Environ. Res. 58(2-5):...

  20. Theoretical Analysis of Amounts of Musical Noise and Speech Distortion in Structure-Generalized Parametric Blind Spatial Subtraction Array

    NASA Astrophysics Data System (ADS)

    Miyazaki, Ryoichi; Saruwatari, Hiroshi; Shikano, Kiyohiro

    We propose a structure-generalized blind spatial subtraction array (BSSA), and the theoretical analysis of the amounts of musical noise and speech distortion. The structure of BSSA should be selected according to the application, i.e., a channelwise BSSA is recommended for listening but a conventional BSSA is suitable for speech recognition.

  1. Pacific Array

    NASA Astrophysics Data System (ADS)

    Kawakatsu, H.; Takeo, A.; Isse, T.; Nishida, K.; Shiobara, H.; Suetsugu, D.

    2014-12-01

    Based on our recent results on broadband ocean bottom seismometry, we propose a next generation large-scale array experiment in the ocean. Recent advances in ocean bottom broadband seismometry (e.g., Suetsugu & Shiobara, 2014, Annual Review EPS), together with advances in the seismic analysis methodology, have now enabled us to resolve the regional 1-D structure of the entire lithosphere/asthenosphere system, including seismic anisotropy (both radial and azimuthal), with deployments of ~10-15 broadband ocean bottom seismometers (BBOBSs) (namely "ocean-bottom broadband dispersion survey"; Takeo et al., 2013, JGR; Kawakatsu et al., 2013, AGU; Takeo, 2014, Ph.D. Thesis; Takeo et al., 2014, JpGU). Having ~15 BBOBSs as an array unit for 2-year deployment, and repeating such deployments in a leap-frog way (an array of arrays) for a decade or so would enable us to cover a large portion of the Pacific basin. Such efforts, not only by giving regional constraints on the 1-D structure, but also by sharing waveform data for global scale waveform tomography, would drastically increase our knowledge of how plate tectonics works on this planet, as well as how it worked for the past 150 million years. International collaborations might be sought.

  2. Automated image analysis reveals the dynamic 3-dimensional organization of multi-ciliary arrays

    PubMed Central

    Galati, Domenico F.; Abuin, David S.; Tauber, Gabriel A.; Pham, Andrew T.; Pearson, Chad G.

    2016-01-01

    ABSTRACT Multi-ciliated cells (MCCs) use polarized fields of undulating cilia (ciliary array) to produce fluid flow that is essential for many biological processes. Cilia are positioned by microtubule scaffolds called basal bodies (BBs) that are arranged within a spatially complex 3-dimensional geometry (3D). Here, we develop a robust and automated computational image analysis routine to quantify 3D BB organization in the ciliate, Tetrahymena thermophila. Using this routine, we generate the first morphologically constrained 3D reconstructions of Tetrahymena cells and elucidate rules that govern the kinetics of MCC organization. We demonstrate the interplay between BB duplication and cell size expansion through the cell cycle. In mutant cells, we identify a potential BB surveillance mechanism that balances large gaps in BB spacing by increasing the frequency of closely spaced BBs in other regions of the cell. Finally, by taking advantage of a mutant predisposed to BB disorganization, we locate the spatial domains that are most prone to disorganization by environmental stimuli. Collectively, our analyses reveal the importance of quantitative image analysis to understand the principles that guide the 3D organization of MCCs. PMID:26700722

  3. Comparative gene array analysis of progenitor cells from human paired deep neck and subcutaneous adipose tissue.

    PubMed

    Tews, D; Schwar, V; Scheithauer, M; Weber, T; Fromme, T; Klingenspor, M; Barth, T F; Möller, P; Holzmann, K; Debatin, K M; Fischer-Posovszky, P; Wabitsch, M

    2014-09-01

    Brown and white adipocytes have been shown to derive from different progenitors. In this study we sought to clarify the molecular differences between human brown and white adipocyte progenitors cells. To this end, we performed comparative gene array analysis on progenitor cells isolated from paired biopsies of deep and subcutaneous neck adipose tissue from individuals (n = 6) undergoing neck surgery. Compared with subcutaneous neck progenitors, cells from the deep neck adipose tissue displayed marked differences in gene expression pattern, including 355 differentially regulated (>1.5 fold) genes. Analysis of highest regulated genes revealed that STMN2, MME, ODZ2, NRN1 and IL13RA2 genes were specifically expressed in white progenitor cells, whereas expression of LRRC17, CNTNAP3, CD34, RGS7BP and ADH1B marked brown progenitor cells. In conclusion, progenitors from deep neck and subcutaneous neck adipose tissue are characterized by a distinct molecular signature, giving rise to either brown or white adipocytes. The newly identified markers may provide potential pharmacological targets facilitating brown adipogenesis. PMID:25102227

  4. Exploring doxorubicin localization in eluting TiO2 nanotube arrays through fluorescence correlation spectroscopy analysis.

    PubMed

    De Santo, Ilaria; Sanguigno, Luigi; Causa, Filippo; Monetta, Tullio; Netti, Paolo A

    2012-11-01

    Drug elution properties of TiO(2) nanotube arrays have been largely investigated by means of solely macroscopic observations. Controversial elution performances have been reported so far and a clear comprehension of these phenomena is still missing as a consequence of a lack of molecular investigation methods. Here we propose a way to discern drug elution properties of nanotubes through the evaluation of drug localization by Fluorescence Correlation Spectroscopy (FCS) analysis. We verified this method upon doxorubicin elution from differently loaded TiO(2) nanotubes. Diverse elution profiles were obtained from nanotubes filled by soaking and wet vacuum impregnation methods. Impregnated nanotubes controlled drug diffusion up to thirty days, while soaked samples completed elution in seven days. FCS analysis of doxorubicin motion in loaded nanotubes clarified that more than 90% of drugs dwell preferentially in inter-nanotube spaces in soaked samples due to decorrelation in a 2D fashion, while a 97% fraction of molecules showed 1D mobility ascribable to displacements along the nanotube vertical axis of wet vacuum impregnated nanotubes. The diverse drug localizations inferred from FCS measurements, together with distinct drug-surface interaction strengths resulting from diverse drug filling techniques, could explain the variability in elution kinetics.

  5. Flat-plate solar array project. Volume 8: Project analysis and integration

    NASA Technical Reports Server (NTRS)

    Mcguire, P.; Henry, P.

    1986-01-01

    Project Analysis and Integration (PA&I) performed planning and integration activities to support management of the various Flat-Plate Solar Array (FSA) Project R&D activities. Technical and economic goals were established by PA&I for each R&D task within the project to coordinate the thrust toward the National Photovoltaic Program goals. A sophisticated computer modeling capability was developed to assess technical progress toward meeting the economic goals. These models included a manufacturing facility simulation, a photovoltaic power station simulation and a decision aid model incorporating uncertainty. This family of analysis tools was used to track the progress of the technology and to explore the effects of alternative technical paths. Numerous studies conducted by PA&I signaled the achievement of milestones or were the foundation of major FSA project and national program decisions. The most important PA&I activities during the project history are summarized. The PA&I planning function is discussed and how it relates to project direction and important analytical models developed by PA&I for its analytical and assessment activities are reviewed.

  6. Array for Microwave Background Anisotropy: Observations, Data Analysis, and Results for Sunyaev-Zel'Dovich Effects

    NASA Astrophysics Data System (ADS)

    Wu, Jiun-Huei Proty; Ho, Paul T. P.; Huang, Chih-Wei Locutus; Koch, Patrick M.; Liao, Yu-Wei; Lin, Kai-Yang; Liu, Guo-Chin; Molnar, Sandor M.; Nishioka, Hiroaki; Umetsu, Keiichi; Wang, Fu-Cheng; Altamirano, Pablo; Birkinshaw, Mark; Chang, Chia-Hao; Chang, Shu-Hao; Chang, Su-Wei; Chen, Ming-Tang; Chiueh, Tzihong; Han, Chih-Chiang; Huang, Yau-De; Hwang, Yuh-Jing; Jiang, Homin; Kesteven, Michael; Kubo, Derek Y.; Lancaster, Katy; Li, Chao-Te; Martin-Cocher, Pierre; Oshiro, Peter; Raffin, Philippe; Wei, Tashun; Wilson, Warwick

    2009-04-01

    We present observations, analysis, and results for the first-year operation of Array for Microwave Background Anisotropy (AMiBA), an interferometric experiment designed to study cosmology via the measurement of cosmic microwave background (CMB). AMiBA is the first CMB interferometer operating at 3 mm to have reported successful results, currently with seven close-packed antennas of 60 cm diameter giving a synthesized resolution of around 6'. During 2007, AMiBA detected the Sunyaev-Zel'dovich effects (SZEs) of six galaxy clusters at redshift 0.091 <= z <= 0.322. An observing strategy with on-off-source switching is used to minimize the effects from electronic offset and ground pickup. Planets were used to test the observational capability of AMiBA and to calibrate the conversion from correlator time-lag data to visibilities. The detailed formalism for data analysis is given. We summarize our early tests including observations of planets and quasars, and present images, visibility profiles, the estimated central coordinates, sizes, and SZE amplitudes of the galaxy clusters. Scientific implications are summarized. We also discuss possible systematic effects in the results.

  7. Large-scale arrays of picolitre chambers for single-cell analysis of large cell populations.

    PubMed

    Lee, Won Chul; Rigante, Sara; Pisano, Albert P; Kuypers, Frans A

    2010-11-01

    We present a new method to analyze the cytoplasmic contents of single cells in large cell populations. This new method consists of an array of microchambers in which individual cells are collected, enclosed, and lysed to create a reaction mixture of the cytoplasm with extracellular detection agents. This approach was tested for the analysis of red blood cells in 10,000 microchambers in parallel. Single cells were routinely collected in more than 60% of microchambers, the collected cells were robustly (up to 99%) lysed by electric fields, and the cytoplasm enclosed in each microchamber was analyzed with fluorescence microscopy. Using a heterogeneous cell mixture, we verified that the new method could distinguish individual cells by cytoplasmic composition and the analysis compared well with conventional flow-cytometric evaluation of mixed cell populations. In contrast to flow-cytometry, the new method monitored single cells over time, thus characterizing the distributions of caspase activities of 5000 individual cells. This approach should be interesting for a variety of applications that would benefit from the ability to measure the distribution of cytoplasmic compounds in complex cell populations, including hematology, oncology, and immunology.

  8. Rod Climbing of Suspensions

    NASA Astrophysics Data System (ADS)

    Guo, Youjing; Wang, Xiaorong

    We wish to report an unexpected effect observed for particle suspensions sucked to pass through a vertical pipe. Above a critical concentration, the suspension on the outside of the pipe may climb along the outside wall of the pipe and then display a surprising rod-climbing effect. Our study shows that the phenomenon is influenced mainly by the suspension composition, the pipe dimension and the suction speed. The effects of the pipe materials of different kinds are negligible. Increasing the suction force and the concentration increases the climbing height. Increasing the pipe diameter and wall thickness reduces the climbing effect. This behavior may be relevant to that the suspensions of the type described are all displaying markedly shear-thickening.

  9. Detection analysis of surface hydroxyl active sites and simulation calculation of the surface dissociation constants of aqueous diatomite suspensions

    NASA Astrophysics Data System (ADS)

    Ma, Shu-Cui; Wang, Zhi-Gang; Zhang, Ji-Lin; Sun, De-Hui; Liu, Gui-Xia

    2015-02-01

    The surface properties of the diatomite were investigated using nitrogen adsorption/deadsorption isotherms, TG-DSC, FTIR, and XPS, and surface protonation-deprotonation behavior was determined by continuous acid-base potentiometric titration technique. The diatomite sample with porous honeycomb structure has a BET specific surface area of 10.21 m2/g and large numbers of surface hydroxyl functional groups (i.e. tbnd Si-OH, tbnd Fe-OH, and tbnd Al-OH). These surface hydroxyls can be protonated or deprotonated depending on the pH of the suspension. The experimental potentiometric data in two different ionic strength solutions (0.1 and 0.05 mol/L NaCl) were fitted using ProtoFit GUI V2.1 program by applying diffuse double layer model (DLM) with three amphoteric sites and minimizing the sum of squares between a dataset derivative function and a model derivative function. The optimized surface parameters (i.e. surface dissociation constants (log K1, log K2) and surface site concentrations (log C)) of the sample were obtained. Based on the optimized surface parameters, the surface species distribution was calculated using Program-free PHREEQC 3.1.2. Thus, this work reveals considerable new information about surface protonation-deprotonation processes and surface adsorptive behaviors of the diatomite, which helps us to effectively use the cheap and cheerful diatomite clay adsorbent.

  10. Analysis of the Proteins Secreted from the Oryza meyeriana Suspension-Cultured Cells Induced by Xanthomonas oryzae pv. oryzae

    PubMed Central

    Chen, Xian; Dong, Yan; Yu, Chulang; Fang, XianPing; Deng, Zhiping; Yan, Chengqi; Chen, Jianping

    2016-01-01

    Oryza meyeriana, a wild species of rice from China, shows high resistance to Xanthomonas oryzae pv. oryzae (Xoo), the cause of rice bacterial blight, one of the most serious rice pathogens. To better understand the resistance mechanism, a proteomic study was conducted to identify changes in the proteins secreted in embryo cell suspension cultures in response to Xoo. After two-dimensional difference gel electrophoresis (2D-DIGE), 72 differentially expressed protein spots corresponding to 34 proteins were identified by Matrix-Assisted Laser Desorption/ Ionization Time of Flight Mass Spectrometry. Of the 34 proteins, 10 were up regulated and 24 down regulated. The secreted proteins identified were predicted to be involved in various biological processes, including signal transduction, defense, ROS and cell wall modification. 77% of the 34 proteins were predicted to have a signal peptide by Signal P. Quantitative Real-Time PCR showed that transcript levels of 14 secreted proteins were not well correlated with secreted protein levels. Peroxidase activity was up regulated in both O. meyriana and susceptible rice but was about three times higher in O. meyeriana. This suggests that peroxidases may play an important role in the early response to Xoo in O. meyeriana. These results not only provide a better understanding of the resistance mechanism of O. meyeriana, but have implications for studies of the interactions between other plants and their pathogens. PMID:27196123

  11. Kinematic and dynamic analysis of the McPherson suspension with a planar quarter-car model

    NASA Astrophysics Data System (ADS)

    Hurel, Jorge; Mandow, Anthony; García-Cerezo, Alfonso

    2013-09-01

    McPherson suspension modelling poses a challenging problem due to its nonlinear asymmetric behaviour. The paper proposes a planar quarter-car analytical model that not only considers vertical motion of the sprung mass (chassis) but also: (i) rotation and translation for the unsprung mass (wheel assembly), (ii) wheel mass and its inertia moment about the longitudinal axis, and (iii) tyre damping and lateral deflection. This kinematic-dynamic model offers a solution to two important shortcomings of the conventional quarter-car model: it accounts for geometry and for tyre modelling. The paper offers a systematic development of the planar model as well as the complete set of mathematical equations. This analytical model can be suitable for fast computation in hardware-in-the-loop applications. Furthermore, a reproducible Simulink implementation is given. The model has been compared with a realistic Adams/View simulation to analyse dynamic behaviour for the jounce and rebound motion of the wheel and two relevant kinematic parameters: camber angle and track width variation.

  12. Halbach arrays in precision motion control

    SciTech Connect

    Trumper, D.L.; Williams, M.E.

    1995-02-01

    The Halbach array was developed for use as an optical element in particle accelerators. Following up on a suggestion from Klaus Halbach, the authors have investigated the utility of such arrays as the permanent magnet structure for synchronous machines in cartesian, polar, and cylindrical geometries. Their work has focused on the design of a novel Halbach array linear motor for use in a magnetic suspension stage for photolithography. This paper presents the details of the motor design and its force and power characteristics.

  13. Towards a Joint Analysis of Data from the IceCube Neutrino Telescope, the Pierre Auger Observatory and Telescope Array

    NASA Astrophysics Data System (ADS)

    Christov; Golup, G.; Montaruli, T.; Rameez, M.; Aublin, J.; Caccianiga, L.; Ghia, P. L.; Roulet, E.; Unger, M.; Sagawa, H.; Tinyakov, P.

    A joint point-source analysis to search for correlations between the arrival directions of neutrinos and ultra-high energy cosmic rays (UHECRs) is being planned by the IceCube, Pierre Auger and Telescope Array Collaborations. A cross-correlation analysis will be performed using ten years of Auger data, six years of Telescope Array data and a signal-rich set of neutrino candidate events detected at IceCube. Also, a likelihood analysis will be applied to the same sample of neutrinos, stacking their arrival directions, and to UHECRs. Finally, another likelihood analysis will be performed on stacked UHECRs and the IceCube 4-year sample of clean, through-going muons that could be associated with charged-current muon neutrino interactions. An outline of the analyses, their sensitivities and discovery potentials is presented here.

  14. Coupled-mode analysis of gain and wavelength oscillation characteristics of diode laser phased arrays

    NASA Technical Reports Server (NTRS)

    Butler, J. K.; Ettenberg, M.; Ackley, D. E.

    1985-01-01

    The lasing wavelengths and gain characteristics of the modes of phase-locked arrays of channel-substrate-planar (CSP) lasers are presented. The gain values for the array modes are determined from complex coupling coefficients calculated using the fields of neighboring elements of the array. The computations show that, for index guided lasers which have nearly planar phase fronts, the highest order array mode will be preferred. The 'in-phase' or fundamental mode, which produces only one major lobe in the far-field radiation pattern, has the lowest modal gain of all array modes. The modal gain differential between the highest order and fundamental modes is less than 10/cm for weak coupling between the elements.

  15. Sensor placement for the analysis of seismic surface waves: sources of error, design criterion and array design algorithms

    NASA Astrophysics Data System (ADS)

    Maranò, Stefano; Fäh, Donat; Lu, Yue M.

    2014-06-01

    Seismic surface waves can be measured by deploying an array of seismometers on the surface of the earth. The goal of such measurement surveys is, usually, to estimate the velocity of propagation and the direction of arrival of the seismic waves. In this paper, we address the issue of sensor placement for the analysis of seismic surface waves from ambient vibration wavefields. First, we explain in detail how the array geometry affects the mean-squared estimation error of parameters of interest, such as the velocity and direction of propagation, both at low and high signal-to-noise ratios (SNRs). Secondly, we propose a cost function suitable for the design of the array geometry with particular focus on the estimation of the wavenumber of both Love and Rayleigh waves. Thirdly, we present and compare several computational approaches to minimize the proposed cost function. Numerical experiments verify the effectiveness of our cost function and resulting array geometry designs, leading to greatly improved estimation performance in comparison to arbitrary array geometries, both at low and high SNR levels.

  16. Membrane filtration of food suspensions.

    PubMed Central

    Sharpe, A N; Peterkin, P I; Dudas, I

    1979-01-01

    Factors affecting the membrane filtration of food suspensions were studied for 58 foods and 13 membrane filters. Lot number within a brand, pore size (0.45 or 0.8 micrometer), and time elapsed before filtration had little effect on filterability. Brand of membrane filter, flow direction, pressure differential, age (microbiological quality) of the food, duration of the blending process, temperature, and concentration of food in the suspension had significant and often predictable effects. Preparation of suspensions by Stomacher (relative to rotary blender) addition of surfactant (particularly at elevated temperature) and prior incubation with proteases sometimes had dramatic effects of filterability. In contrast to popular opinion, foods can be membrane filtered in quantities pertinent to the maximums used in conventional plating procedures. Removal of growth inhibitors and food debris is possible by using membrane filters. Lowering of the limits of detection of microorganisms by concentration on membrane filters can be considered feasible for many foods. The data are particularly relevant to the use of hydrophobic grid-membrane filters (which are capable of enumerating up to 9 X 10(4) organisms per filter) in instrumented methods of food microbiological analysis. Images PMID:760637

  17. Exome Array Analysis Identifies CAV1/CAV2 as a Susceptibility Locus for Intraocular Pressure

    PubMed Central

    Chen, Fei; Klein, Alison P.; Klein, Barbara E. K.; Lee, Kristine E.; Truitt, Barbara; Klein, Ronald; Iyengar, Sudha K.; Duggal, Priya

    2015-01-01

    Purpose. Intraocular pressure (IOP) is an important clinical parameter in the evaluation of ocular health. Elevated IOP is a major risk factor for primary open-angle glaucoma (POAG). The goal of this study was to identify rare and less common variants that influence IOP. Methods. We performed an exome array analysis in a subset of 1660 individuals from a population-based cohort, the Beaver Dam Eye Study. Associations with IOP were tested on 45,849 single nucleotide variants and 12,390 autosomal genes across the genome. Results. Intraocular pressure was suggestively associated with novel variants located in FAR2 at 12p11.22 (rs4931170, P = 1.2 × 10−5), in GGA3 at 17q25.1 (rs52809447, P = 6.7 × 10−5), and in PKDREJ at 22q13.31 (rs7291444, P = 7.4 × 10−5). Gene-based analysis found suggestive associations between IOP and the genes HAP1, MTBP, FREM3, and PHF12. We successfully replicated the associations with GAS7 (P = 7.4 × 10−3) for IOP, and also identified a previously reported POAG locus in the CAV1/CAV2 region to be associated with IOP (P = 3.3 × 10−3). This association was confirmed in a meta-analysis with three published genome-wide association studies (Pcombined = 4.0 × 10−11). Conclusions. Our results suggest that novel genetic variants and genes with multiple, less common variants may play a role in the control of IOP. The implication of the caveolin genes, CAV1/CAV2, as a common genetic factor influencing both IOP variations and POAG may provide new insights of the underlying mechanism leading to glaucoma and glaucomatous visual field loss. PMID:25525164

  18. Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis.

    PubMed

    Gao, Wei; Emaminejad, Sam; Nyein, Hnin Yin Yin; Challa, Samyuktha; Chen, Kevin; Peck, Austin; Fahad, Hossain M; Ota, Hiroki; Shiraki, Hiroshi; Kiriya, Daisuke; Lien, Der-Hsien; Brooks, George A; Davis, Ronald W; Javey, Ali

    2016-01-28

    Wearable sensor technologies are essential to the realization of personalized medicine through continuously monitoring an individual's state of health. Sampling human sweat, which is rich in physiological information, could enable non-invasive monitoring. Previously reported sweat-based and other non-invasive biosensors either can only monitor a single analyte at a time or lack on-site signal processing circuitry and sensor calibration mechanisms for accurate analysis of the physiological state. Given the complexity of sweat secretion, simultaneous and multiplexed screening of target biomarkers is critical and requires full system integration to ensure the accuracy of measurements. Here we present a mechanically flexible and fully integrated (that is, no external analysis is needed) sensor array for multiplexed in situ perspiration analysis, which simultaneously and selectively measures sweat metabolites (such as glucose and lactate) and electrolytes (such as sodium and potassium ions), as well as the skin temperature (to calibrate the response of the sensors). Our work bridges the technological gap between signal transduction, conditioning (amplification and filtering), processing and wireless transmission in wearable biosensors by merging plastic-based sensors that interface with the skin with silicon integrated circuits consolidated on a flexible circuit board for complex signal processing. This application could not have been realized using either of these technologies alone owing to their respective inherent limitations. The wearable system is used to measure the detailed sweat profile of human subjects engaged in prolonged indoor and outdoor physical activities, and to make a real-time assessment of the physiological state of the subjects. This platform enables a wide range of personalized diagnostic and physiological monitoring applications.

  19. Field-Programmable Gate Array Computer in Structural Analysis: An Initial Exploration

    NASA Technical Reports Server (NTRS)

    Singleterry, Robert C., Jr.; Sobieszczanski-Sobieski, Jaroslaw; Brown, Samuel

    2002-01-01

    This paper reports on an initial assessment of using a Field-Programmable Gate Array (FPGA) computational device as a new tool for solving structural mechanics problems. A FPGA is an assemblage of binary gates arranged in logical blocks that are interconnected via software in a manner dependent on the algorithm being implemented and can be reprogrammed thousands of times per second. In effect, this creates a computer specialized for the problem that automatically exploits all the potential for parallel computing intrinsic in an algorithm. This inherent parallelism is the most important feature of the FPGA computational environment. It is therefore important that if a problem offers a choice of different solution algorithms, an algorithm of a higher degree of inherent parallelism should be selected. It is found that in structural analysis, an 'analog computer' style of programming, which solves problems by direct simulation of the terms in the governing differential equations, yields a more favorable solution algorithm than current solution methods. This style of programming is facilitated by a 'drag-and-drop' graphic programming language that is supplied with the particular type of FPGA computer reported in this paper. Simple examples in structural dynamics and statics illustrate the solution approach used. The FPGA system also allows linear scalability in computing capability. As the problem grows, the number of FPGA chips can be increased with no loss of computing efficiency due to data flow or algorithmic latency that occurs when a single problem is distributed among many conventional processors that operate in parallel. This initial assessment finds the FPGA hardware and software to be in their infancy in regard to the user conveniences; however, they have enormous potential for shrinking the elapsed time of structural analysis solutions if programmed with algorithms that exhibit inherent parallelism and linear scalability. This potential warrants further

  20. Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis

    NASA Astrophysics Data System (ADS)

    Gao, Wei; Emaminejad, Sam; Nyein, Hnin Yin Yin; Challa, Samyuktha; Chen, Kevin; Peck, Austin; Fahad, Hossain M.; Ota, Hiroki; Shiraki, Hiroshi; Kiriya, Daisuke; Lien, Der-Hsien; Brooks, George A.; Davis, Ronald W.; Javey, Ali

    2016-01-01

    Wearable sensor technologies are essential to the realization of personalized medicine through continuously monitoring an individual’s state of health. Sampling human sweat, which is rich in physiological information, could enable non-invasive monitoring. Previously reported sweat-based and other non-invasive biosensors either can only monitor a single analyte at a time or lack on-site signal processing circuitry and sensor calibration mechanisms for accurate analysis of the physiological state. Given the complexity of sweat secretion, simultaneous and multiplexed screening of target biomarkers is critical and requires full system integration to ensure the accuracy of measurements. Here we present a mechanically flexible and fully integrated (that is, no external analysis is needed) sensor array for multiplexed in situ perspiration analysis, which simultaneously and selectively measures sweat metabolites (such as glucose and lactate) and electrolytes (such as sodium and potassium ions), as well as the skin temperature (to calibrate the response of the sensors). Our work bridges the technological gap between signal transduction, conditioning (amplification and filtering), processing and wireless transmission in wearable biosensors by merging plastic-based sensors that interface with the skin with silicon integrated circuits consolidated on a flexible circuit board for complex signal processing. This application could not have been realized using either of these technologies alone owing to their respective inherent limitations. The wearable system is used to measure the detailed sweat profile of human subjects engaged in prolonged indoor and outdoor physical activities, and to make a real-time assessment of the physiological state of the subjects. This platform enables a wide range of personalized diagnostic and physiological monitoring applications.

  1. Fully integrated wearable sensor arrays for multiplexed in situ perspiration analysis.

    PubMed

    Gao, Wei; Emaminejad, Sam; Nyein, Hnin Yin Yin; Challa, Samyuktha; Chen, Kevin; Peck, Austin; Fahad, Hossain M; Ota, Hiroki; Shiraki, Hiroshi; Kiriya, Daisuke; Lien, Der-Hsien; Brooks, George A; Davis, Ronald W; Javey, Ali

    2016-01-28

    Wearable sensor technologies are essential to the realization of personalized medicine through continuously monitoring an individual's state of health. Sampling human sweat, which is rich in physiological information, could enable non-invasive monitoring. Previously reported sweat-based and other non-invasive biosensors either can only monitor a single analyte at a time or lack on-site signal processing circuitry and sensor calibration mechanisms for accurate analysis of the physiological state. Given the complexity of sweat secretion, simultaneous and multiplexed screening of target biomarkers is critical and requires full system integration to ensure the accuracy of measurements. Here we present a mechanically flexible and fully integrated (that is, no external analysis is needed) sensor array for multiplexed in situ perspiration analysis, which simultaneously and selectively measures sweat metabolites (such as glucose and lactate) and electrolytes (such as sodium and potassium ions), as well as the skin temperature (to calibrate the response of the sensors). Our work bridges the technological gap between signal transduction, conditioning (amplification and filtering), processing and wireless transmission in wearable biosensors by merging plastic-based sensors that interface with the skin with silicon integrated circuits consolidated on a flexible circuit board for complex signal processing. This application could not have been realized using either of these technologies alone owing to their respective inherent limitations. The wearable system is used to measure the detailed sweat profile of human subjects engaged in prolonged indoor and outdoor physical activities, and to make a real-time assessment of the physiological state of the subjects. This platform enables a wide range of personalized diagnostic and physiological monitoring applications. PMID:26819044

  2. Testing small-aperture array analysis on well-located earthquakes, and application to the location of deep tremor

    USGS Publications Warehouse

    La, Rocca M.; Galluzzo, D.; Malone, S.; McCausland, W.; Saccorotti, G.; Del, Pezzo E.

    2008-01-01

    We have here analyzed local and regional earthquakes using array techniques with the double aim of quantifying the errors associated with the estimation of propagation parameters of seismic signals and testing the suitability of a probabilistic location method for the analysis of nonimpulsive signals. We have applied the zero-lag cross-correlation method to earthquakes recorded by three dense arrays in Puget Sound and Vancouver Island to estimate the slowness and back azimuth of direct P waves and S waves. The results are compared with the slowness and back azimuth computed from the source location obtained by the analysis of data recorded by the Pacific Northwest seismic network (PNSN). This comparison has allowed a quantification of the errors associated with the estimation of slowness and back azimuth obtained through the analysis of array data. The statistical analysis gives ??BP = 10?? and ??BS = 8?? as standard deviations for the back azimuth and ??SP = 0.021 sec/km and ??SS = 0.033 sec /km for the slowness results of the P and S phases, respectively. These values are consistent with the theoretical relationship between slowness and back azimuth and their uncertainties. We have tested a probabilistic source location method on the local earthquakes based on the use of the slowness estimated for two or three arrays without taking into account travel-time information. Then we applied the probabilistic method to the deep, nonvolcanic tremor recorded by the arrays during July 2004. The results of the tremor location using the probabilistic method are in good agreement with those obtained by other techniques. The wide depth range, of between 10 and 70 km, and the source migration with time are evident in our results. The method is useful for locating the source of signals characterized by the absence of pickable seismic phases.

  3. Spectral Entropy Based Neuronal Network Synchronization Analysis Based on Microelectrode Array Measurements

    PubMed Central

    Kapucu, Fikret E.; Välkki, Inkeri; Mikkonen, Jarno E.; Leone, Chiara; Lenk, Kerstin; Tanskanen, Jarno M. A.; Hyttinen, Jari A. K.

    2016-01-01

    Synchrony and asynchrony are essential aspects of the functioning of interconnected neuronal cells and networks. New information on neuronal synchronization can be expected to aid in understanding these systems. Synchronization provides insight in the functional connectivity and the spatial distribution of the information processing in the networks. Synchronization is generally studied with time domain analysis of neuronal events, or using direct frequency spectrum analysis, e.g., in specific frequency bands. However, these methods have their pitfalls. Thus, we have previously proposed a method to analyze temporal changes in the complexity of the frequency of signals originating from different network regions. The method is based on the correlation of time varying spectral entropies (SEs). SE assesses the regularity, or complexity, of a time series by quantifying the uniformity of the frequency spectrum distribution. It has been previously employed, e.g., in electroencephalogram analysis. Here, we revisit our correlated spectral entropy method (CorSE), providing evidence of its justification, usability, and benefits. Here, CorSE is assessed with simulations and in vitro microelectrode array (MEA) data. CorSE is first demonstrated with a specifically tailored toy simulation to illustrate how it can identify synchronized populations. To provide a form of validation, the method was tested with simulated data from integrate-and-fire model based computational neuronal networks. To demonstrate the analysis of real data, CorSE was applied on in vitro MEA data measured from rat cortical cell cultures, and the results were compared with three known event based synchronization measures. Finally, we show the usability by tracking the development of networks in dissociated mouse cortical cell cultures. The results show that temporal correlations in frequency spectrum distributions reflect the network relations of neuronal populations. In the simulated data, CorSE unraveled the

  4. Optical sensitivity non-uniformity analysis and optimization of a tilt optical readout focal plane array

    NASA Astrophysics Data System (ADS)

    Fu, Jianyu; Shang, Haiping; Shi, Haitao; Li, Zhigang; Ou, Yi; Chen, Dapeng; Zhang, Qingchuan

    2016-02-01

    An optical readout focal plane array (FPA) usually has a differently tilted reflector/absorber at the initial state due to the micromachining technique. The angular deviation of the reflector/absorber has a strong impact on the optical sensitivity non-uniformity, which is a key factor which affects the imaging uniformity. In this study, a theoretical analysis has been developed, and it is found that the stress matching in SiO2-Aluminum (Al) bilayer leg could make a contribution towards reducing the optical sensitivity non-uniformity. Ion implantation of phosphorus (P) has been utilized to control the stress in SiO2 film. By controlling the implantation energy and dose, the stress and stress stability are modified. The optical readout FPA has been successfully fabricated with the stress-control technique based on P+ implantation. It is demonstrated that the gray response non-uniformity of optical readout FPA has decreased from 25.69% to 10.7%.

  5. RAMA: Research Moored Array for African - Asian - Australian Monsoon Analysis and Prediction

    NASA Astrophysics Data System (ADS)

    McPhaden, M. J.

    2008-12-01

    The Indian Ocean is unique among the three tropical oceans in that it is blocked at 25N by the Asian land mass. Seasonal heating and cooling over this land mass sets the stage for dramatic monsoon wind reversals and intense summer rains over areas surrounding the basin. These climate variations have significant societal and economic impacts that affect half the world's population. Despite the importance of the Indian Ocean for both the regional and global climate though, it is the most poorly observed and least well understood of the three tropical oceans. This presentation describes the Research Moored Array for African-Asian-Australian Monsoon Analysis and Prediction (RAMA), which has been designed to provide sustained, basin scale time series data in the Indian Ocean for climate research and forecasting. RAMA is intended to complement other satellite and in situ components of the Indian Ocean Observing System and it is being implemented through a coordinated multi- national effort involving institutions in several countries. We will review the scientific rationale, design criteria, and implementation status of RAMA. We will also illustrate some of the important intraseasonal to interannual time scale phenomena in the region observed with new RAMA time series data. Potential applications of the data for forecasting purposes will also be discussed.

  6. RAMA: Research Moored Array for African-Asian-Australian Monsoon Analysis and Prediction

    NASA Astrophysics Data System (ADS)

    McPhaden, M. J.

    2009-05-01

    The Indian Ocean is unique among the three tropical ocean basins in that it is blocked at 25°N by the Asian land mass. Seasonal heating and cooling over this land mass sets the stage for dramatic monsoon wind reversals and intense rains over areas surrounding the basin. These climate variations have significant societal and economic impacts that affect half the world's population. Despite the importance of the Indian Ocean for both the regional and global climate though, it is the most poorly observed and least well understood of the three tropical oceans. This presentation describes the Research Moored Array for African-Asian- Australian Monsoon Analysis and Prediction (RAMA), which has been designed to provide sustained, basin scale time series data in the Indian Ocean for climate research and forecasting. RAMA is intended to complement other satellite and in situ components of the Indian Ocean Observing System and it is being implemented through a coordinated multi-national effort involving institutions in several countries. We will review the scientific rationale, design criteria, and implementation status of RAMA. We will also illustrate some of the important intraseasonal to interannual time scale phenomena in the region observed with new RAMA time series data. Potential applications of the data for forecasting purposes will also be discussed.

  7. Multiple mass analysis using an ion trap array (ITA) mass analyzer.

    PubMed

    Yu, Xiao; Chu, Yanqiu; Ling, Xing; Ding, Zhengzhi; Xu, Chongsheng; Ding, Li; Ding, Chuan-Fan

    2013-09-01

    A novel ion trap array (ITA) mass analyzer with six ion trapping and analyzing channels was investigated. It is capable of analyzing multiple samples simultaneously. The ITA was built with several planar electrodes made of stainless steel and 12 identical parallel zirconia ceramic substrates plated with conductive metal layers. Each two of the opposing ceramic electrode plates formed a boundary of an ion trap channel and six identical ion trapping and analyzing channels were placed in parallel without physical electrode between any two adjacent channels. The electric field distribution inside each channel was studied with simulation. The new design took the advantage of high precision machining attributable to the rigidity of ceramic, and the convenience of surface patterning technique. The ITA system was tested by using a two-channel electrospray ionization source, a multichannel simultaneous quadruple ion guide, and two detectors. The simultaneous analysis of two different samples with two adjacent ITA channels was achieved and independent mass spectra were obtained. For each channel, the mass resolution was tested. Additional ion trap functions such as mass-selected ion isolation and collision-induced dissociation (CID) were also tested. The results show that one ITA is well suited for multiple simultaneous mass analyses. PMID:23797864

  8. Multiple Mass Analysis Using an Ion Trap Array (ITA) Mass Analyzer

    NASA Astrophysics Data System (ADS)

    Xiao, Yu; Chu, Yanqiu; Ling, Xing; Ding, Zhengzhi; Xu, Chongsheng; Ding, Li; Ding, Chuan-Fan

    2013-09-01

    A novel ion trap array (ITA) mass analyzer with six ion trapping and analyzing channels was investigated. It is capable of analyzing multiple samples simultaneously. The ITA was built with several planar electrodes made of stainless steel and 12 identical parallel zirconia ceramic substrates plated with conductive metal layers. Each two of the opposing ceramic electrode plates formed a boundary of an ion trap channel and six identical ion trapping and analyzing channels were placed in parallel without physical electrode between any two adjacent channels. The electric field distribution inside each channel was studied with simulation. The new design took the advantage of high precision machining attributable to the rigidity of ceramic, and the convenience of surface patterning technique. The ITA system was tested by using a two-channel electrospray ionization source, a multichannel simultaneous quadruple ion guide, and two detectors. The simultaneous analysis of two different samples with two adjacent ITA channels was achieved and independent mass spectra were obtained. For each channel, the mass resolution was tested. Additional ion trap functions such as mass-selected ion isolation and collision-induced dissociation (CID) were also tested. The results show that one ITA is well suited for multiple simultaneous mass analyses.

  9. Analysis and quantification of laser-dazzling effects on IR focal plane arrays

    NASA Astrophysics Data System (ADS)

    Hueber, N.,; Vincent, D.,; Morin, A.,; Dieterlen, A.,; Raymond, P.,

    2010-04-01

    Today Optronic Countermeasure (OCM) concerns imply an IR Focal-Plane Array (FPA) facing an in-band laser irradiation. In order to evaluate the efficiency of new countermeasure concepts or the robustness of FPAs, it is necessary to quantify the whole interaction effects. Even though some studies in the open literature show the vulnerability of imaging systems to laser dazzling, the diversity of analysis criteria employed does not allow the results of these studies to be correlated. Therefore, we focus our effort on the definition of common sensor figures of merit adapted to laser OCM studies. In this paper, two investigation levels are presented: the first one for analyzing the local nonlinear photocell response and the second one for quantifying the whole dazzling impact on image. The first study gives interesting results on InSb photocell behaviors when irradiated by a picosecond MWIR laser. With an increasing irradiance, four different successive responses appear: from linear, logarithmic, decreasing ones to permanent linear offset response. In the second study, our quantifying tools are described and their successful implementation through the picosecond laser-dazzling characterization of an InSb FPA is assessed.

  10. Analysis of differential gene expression by bead-based fiber-optic array in growth-hormone-secreting pituitary adenomas.

    PubMed

    Jiang, Zhiquan; Gui, Songbo; Zhang, Yazhuo

    2010-09-01

    Growth-hormone-secreting pituitary adenomas (GHomas) account for approximately 20% of all pituitary neoplasms. However, the pathogenesis of GHomas remains to be elucidated. To explore the possible pathogenesis of GHomas, we used bead-based fiber-optic arrays to examine the gene expression in five GHomas and compared them to three healthy pituitaries. Four differentially expressed genes were chosen randomly for validation by quantitative real-time reverse transcription-polymerase chain reaction. We then performed pathway analysis on the identified differentially expressed genes using the Kyoto Encyclopedia of Genes and Genomes. Array analysis showed significant increases in the expression of 353 genes and 206 expressed sequence tags (ESTs) and decreases in 565 genes and 29 ESTs. Bioinformatic analysis showed that the genes HIGD1B, HOXB2, ANGPT2, HPGD and BTG2 may play an important role in the tumorigenesis and progression of GHomas. Pathway analysis showed that the wingless-type signaling pathway and extracellular-matrix receptor interactions may play a key role in the tumorigenesis and progression of GHomas. Our data suggested that there are numerous aberrantly expressed genes and pathways involved in the pathogenesis of GHomas. Bead-based fiber-optic arrays combined with pathway analysis of differentially expressed genes appear to be a valid method for investigating the pathogenesis of tumors. PMID:22993617

  11. A prototype for the real-time analysis of the Cherenkov Telescope Array

    NASA Astrophysics Data System (ADS)

    Bulgarelli, Andrea; Fioretti, Valentina; Zoli, Andrea; Aboudan, Alessio; Rodríguez-Vázquez, Juan José; Maier, Gernot; Lyard, Etienne; Bastieri, Denis; Lombardi, Saverio; Tosti, Gino; De Rosa, Adriano; Bergamaschi, Sonia; Interlandi, Matteo; Beneventano, Domenico; Lamanna, Giovanni; Jacquemier, Jean; Kosack, Karl; Antonelli, Lucio Angelo; Boisson, Catherine; Burkowski, Jerzy; Buson, Sara; Carosi, Alessandro; Conforti, Vito; Contreras, Jose Luis; De Cesare, Giovanni; de los Reyes, Raquel; Dumm, Jon; Evans, Phil; Fortson, Lucy; Fuessling, Matthias; Graciani, Ricardo; Gianotti, Fulvio; Grandi, Paola; Hinton, Jim; Humensky, Brian; Knödlseder, Jürgen; Malaguti, Giuseppe; Marisaldi, Martino; Neyroud, Nadine; Nicastro, Luciano; Ohm, Stefan; Osborne, Julian; Rosen, Simon; Tacchini, Alessandro; Torresi, Eleonora; Testa, Vincenzo; Trifoglio, Massimo; Weinstein, Amanda

    2014-07-01

    The Cherenkov Telescope Array (CTA) observatory will be one of the biggest ground-based very-high-energy (VHE) γ- ray observatory. CTA will achieve a factor of 10 improvement in sensitivity from some tens of GeV to beyond 100 TeV with respect to existing telescopes. The CTA observatory will be capable of issuing alerts on variable and transient sources to maximize the scientific return. To capture these phenomena during their evolution and for effective communication to the astrophysical community, speed is crucial. This requires a system with a reliable automated trigger that can issue alerts immediately upon detection of γ-ray flares. This will be accomplished by means of a Real-Time Analysis (RTA) pipeline, a key system of the CTA observatory. The latency and sensitivity requirements of the alarm system impose a challenge because of the anticipated large data rate, between 0.5 and 8 GB/s. As a consequence, substantial efforts toward the optimization of highthroughput computing service are envisioned. For these reasons our working group has started the development of a prototype of the Real-Time Analysis pipeline. The main goals of this prototype are to test: (i) a set of frameworks and design patterns useful for the inter-process communication between software processes running on memory; (ii) the sustainability of the foreseen CTA data rate in terms of data throughput with different hardware (e.g. accelerators) and software configurations, (iii) the reuse of nonreal- time algorithms or how much we need to simplify algorithms to be compliant with CTA requirements, (iv) interface issues between the different CTA systems. In this work we focus on goals (i) and (ii).

  12. Analysis of telescope array receivers for deep-space inter-planetary optical communication link between Earth and Mars

    NASA Astrophysics Data System (ADS)

    Hashmi, Ali Javed; Eftekhar, Ali Asghar; Adibi, Ali; Amoozegar, Farid

    2010-05-01

    Optical communication technology shows promising prospects to fulfill the large bandwidth communication requirements of future deep-space exploration missions that are launched by NASA and various other international space agencies. At Earth, a telescope with a large aperture diameter is required to capture very weak optical signals that are transmitted from distant planets and to support large bandwidth communication link. A single large telescope has the limitations of cost, single point failure in case of malfunction, difficulty in manufacturing high quality optics, maintenance, and trouble in providing communication operations when transmitting spacecraft is close to the Sun. An array of relatively smaller-sized telescopes electrically connected to form an aggregate aperture area equivalent to a single large telescope is a viable alternative to a monolithic gigantic aperture. In this paper, we present the design concept and analysis of telescope array receivers for an optical communication link between Earth and Mars. Pulse-position modulation (PPM) is used at the transmitter end and photon-counting detectors along with the direct-detection technique are employed at each telescope element in the array. We also present the optimization of various system parameters, such as detector size (i.e., receiver field of view), PPM slot width, and the PPM order M, to mitigate the atmospheric turbulence and background noise effects, and to maximize the communication system performance. The performance of different array architectures is evaluated through analytical techniques and Monte-Carlo simulations for a broad range of operational scenarios, such as, Earth-Mars conjunction, Earth-Mars opposition, and different background and turbulence conditions. It is shown that the performance of the telescope array-based receiver is equivalent to a single large telescope; and as compared to current RF technology, telescope array-based optical receivers can provide several orders

  13. Comprehensive analysis of radiative properties of brass and Al arranged in nested cylindrical wire arrays.

    SciTech Connect

    Stafford, A.; Keim, S. F.; Osborne, Glenn C.; Esaulov, Andrey A.; Shrestha, I.; Kantsyrev, Victor Leonidovich; Shlyaptseva, V.; Coverdale, Christine Anne; Williamson, K. M.; Ouart, Nicholas D.; Safronova, Alla S.; Weller, M. E.

    2010-11-01

    Experimental results of nested cylindrical wire arrays (NCWA) consisting of brass (70% Cu and 30% Zn) wires on one array and Al (5056, 5% Mg) wires on the other array performed on the UNR Zebra generator at 1.0 MA current are compared and analyzed. Specifically, radiative properties of K-shell Al and Mg ions and L-shell Cu and Zn ions are compared as functions of the placements of the brass and Al wires on the inner and outer arrays. A full diagnostic set which included more than ten different beam-lines was implemented. Identical loads were fielded to allow the timing of time-gated pinhole and x-ray spectrometers to be shifted to get a more complete understanding of the evolution of plasma parameters over the x-ray pulse. The importance of the study of NCWAs with different wire materials is discussed.

  14. Analysis of Modified SMI Method for Adaptive Array Weight Control. M.S. Thesis

    NASA Technical Reports Server (NTRS)

    Dilsavor, Ronald Louis

    1989-01-01

    An adaptive array is used to receive a desired signal in the presence of weak interference signals which need to be suppressed. A modified sample matrix inversion (SMI) algorithm controls the array weights. The modification leads to increased interference suppression by subtracting a fraction of the noise power from the diagonal elements of the covariance matrix. The modified algorithm maximizes an intuitive power ratio criterion. The expected values and variances of the array weights, output powers, and power ratios as functions of the fraction and the number of snapshots are found and compared to computer simulation and real experimental array performance. Reduced-rank covariance approximations and errors in the estimated covariance are also described.

  15. Graphene- and graphene oxide- based multisensor arrays for selective gas analysis

    NASA Astrophysics Data System (ADS)

    Lipatov, Alexey; Varezhnikov, Alexey; Sysoev, Victor; Kolmakov, Andrei; Sinitskii, Alexander

    2014-03-01

    Arrays of nearly identical graphene devices on Si/SiO2 exhibit a substantial device-to-device variation, even in case of a high-quality chemical vapor deposition (CVD) or mechanically exfoliated graphene. We propose that such device-to-device variation could provide a platform for highly selective multisensor electronic olfactory systems. We fabricated a multielectode array of CVD graphene devices on a Si/SiO2 substrate, and demonstrated that the diversity of these devices is sufficient to reliably discriminate different short-chain alcohols: methanol, ethanol and isopropanol. The diversity of graphene devices on Si/SiO2 could possibly be used to construct multisensor systems trained to recognize other analytes as well. Similar multisensory arrays based on graphene oxide (GO) devices are also capable of discriminating these short-chain alcohols. We will discuss the possibility of chemical modification of GO for further increase the selectivity of GO multisensory arrays.

  16. Phenotype MicroArrays for High-Throughput Phenotypic Testing and Assay of Gene Function

    PubMed Central

    Bochner, Barry R.; Gadzinski, Peter; Panomitros, Eugenia

    2001-01-01

    The bacterium Escherichia coli is used as a model cellular system to test and validate a new technology called Phenotype MicroArrays (PMs). PM technology is a high-throughput technology for simultaneous testing of a large number of cellular phenotypes. It consists of preconfigured well arrays in which each well tests a different cellular phenotype and an automated instrument that continuously monitors and records the response of the cells in all wells of the arrays. For example, nearly 700 phenotypes of E. coli can be assayed by merely pipetting a cell suspension into seven microplate arrays. PMs can be used to directly assay the effects of genetic changes on cells, especially gene knock-outs. Here, we provide data on phenotypic analysis of six strains and show that we can detect expected phenotypes as well as, in some cases, unexpected phenotypes. PMID:11435407

  17. Infrared/millimeter wave mirror array beam combiner design and analysis.

    PubMed

    Tian, Yi; Sun, Gang; Li, Fan; Yan, Hui; Zhang, Li; Li, Zhuo

    2014-06-20

    The design method of an infrared/millimeter wave mirror array type of beam combiner was investigated. The beam combiner was composed of a support plate, air gap, and mirror array. It had two advantages: one was that the size of the beam combiner could be extended by splicing more mirrors; the other was that the millimeter wave passband could be tuned by adjusting the thickness of the air gap. The millimeter wave and infrared structure was designed by using transmission line theory and optimized by a simplex Nelder-Mead method. In order to analyze the influence of deformation on performance, the mechanical characteristics of the mirrors and support plate were analyzed by the finite element method. The relationship between the millimeter wave transmission characteristics and the air gap was also analyzed by transmission line theory. The scattered field caused by pillars was computed by the multilevel fast multipole method. In addition, the effect of edge diffraction on the near field uniformity was analyzed by the aperture field integration method. In order to validate the mirror array splicing principle and the infrared imaging performance, a prototype of the mirror array was fabricated and tested. Finally, the infrared images reflected by the mirror array were obtained and analyzed. The simulation and experiment results validated the feasibility of the mirror array beam combiner.

  18. Finite Element Analysis of Ultrasonic Phased Array Inspections on Anisotropic Welds

    NASA Astrophysics Data System (ADS)

    Harvey, G.; Tweedie, A.; Carpentier, C.; Reynolds, P.

    2011-06-01

    This paper describes a theoretical investigation into the behaviour of anisotropic welds under phased array inspection procedures using a 128 element linear array. Two advanced inspection techniques are simulated, and their suitability compared. A finite element (FE) model, configured in PZFlex, is used to represent both the variations in crystal orientation found in a typical anisotropic weld, and also the linear array configuration. Firstly, through transmission spectra of the weld are used to determine the optimum operating frequency and configuration of the array in order to detect a 3 mm SDH in the weld. Next, the Full Matrix Capture (FMC) technique is simulated, and an image of the weld constructed using the Total Focussing Method (TFM). This is accomplished by transmitting on each element sequentially, while receiving on the remaining 127 elements. This approach provides spatial averaging over the weld area, reducing the distortion caused by the anisotropic media. Finally, Time Reversal Acoustic (TRA) methods were employed to coherently focus the array at the defect and compensate for the elemental timing variations caused by the complex medium. Results illustrate the potential for inspecting anisotropic welds when using correctly designed arrays and implementing novel inspection procedures.

  19. LEO Download Capacity Analysis for a Network of Adaptive Array Ground Stations

    NASA Technical Reports Server (NTRS)

    Ingram, Mary Ann; Barott, William C.; Popovic, Zoya; Rondineau, Sebastien; Langley, John; Romanofsky, Robert; Lee, Richard Q.; Miranda, Felix; Steffes, Paul; Mandl, Dan

    2005-01-01

    To lower costs and reduce latency, a network of adaptive array ground stations, distributed across the United States, is considered for the downlink of a polar-orbiting low earth orbiting (LEO) satellite. Assuming the X-band 105 Mbps transmitter of NASA s Earth Observing 1 (EO-1) satellite with a simple line-of-sight propagation model, the average daily download capacity in bits for a network of adaptive array ground stations is compared to that of a single 11 m dish in Poker Flats, Alaska. Each adaptive array ground station is assumed to have multiple steerable antennas, either mechanically steered dishes or phased arrays that are mechanically steered in azimuth and electronically steered in elevation. Phased array technologies that are being developed for this application are the space-fed lens (SFL) and the reflectarray. Optimization of the different boresight directions of the phased arrays within a ground station is shown to significantly increase capacity; for example, this optimization quadruples the capacity for a ground station with eight SFLs. Several networks comprising only two to three ground stations are shown to meet or exceed the capacity of the big dish, Cutting the data rate by half, which saves modem costs and increases the coverage area of each ground station, is shown to increase the average daily capacity of the network for some configurations.

  20. Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples

    PubMed Central

    2013-01-01

    Background SNP arrays output two signals that reflect the total genomic copy number (LRR) and the allelic ratio (BAF), which in combination allow the characterisation of allele-specific copy numbers (ASCNs). While methods based on hidden Markov models (HMMs) have been extended from array comparative genomic hybridisation (aCGH) to jointly handle the two signals, only one method based on change-point detection, ASCAT, performs bivariate segmentation. Results In the present work, we introduce a generic framework for bivariate segmentation of SNP array data for ASCN analysis. For the matter, we discuss the characteristics of the typically applied BAF transformation and how they affect segmentation, introduce concepts of multivariate time series analysis that are of concern in this field and discuss the appropriate formulation of the problem. The framework is implemented in a method named CnaStruct, the bivariate form of the structural change model (SCM), which has been successfully applied to transcriptome mapping and aCGH. Conclusions On a comprehensive synthetic dataset, we show that CnaStruct outperforms the segmentation of existing ASCN analysis methods. Furthermore, CnaStruct can be integrated into the workflows of several ASCN analysis tools in order to improve their performance, specially on tumour samples highly contaminated by normal cells. PMID:23497144

  1. Analysis of seismic waves crossing the Santa Clara Valley using the three-component MUSIQUE array algorithm

    NASA Astrophysics Data System (ADS)

    Hobiger, Manuel; Cornou, Cécile; Bard, Pierre-Yves; Le Bihan, Nicolas; Imperatori, Walter

    2016-08-01

    We introduce the MUSIQUE algorithm and apply it to seismic wave field recordings in California. The algorithm is designed to analyse seismic signals recorded by arrays of three-component seismic sensors. It is based on the MUSIC and the quaternion-MUSIC algorithms. In a first step, the MUSIC algorithm is applied in order to estimate the backazimuth and velocity of incident seismic waves and to discriminate between Love and possible Rayleigh waves. In a second step, the polarization parameters of possible Rayleigh waves are analysed using quaternion-MUSIC, distinguishing retrograde and prograde Rayleigh waves and determining their ellipticity. In this study, we apply the MUSIQUE algorithm to seismic wave field recordings of the San Jose Dense Seismic Array. This array has been installed in 1999 in the Evergreen Basin, a sedimentary basin in the Eastern Santa Clara Valley. The analysis includes 22 regional earthquakes with epicenters between 40 and 600 km distant from the array and covering different backazimuths with respect to the array. The azimuthal distribution and the energy partition of the different surface wave types are analysed. Love waves dominate the wave field for the vast majority of the events. For close events in the north, the wave field is dominated by the first harmonic mode of Love waves, for farther events, the fundamental mode dominates. The energy distribution is different for earthquakes occurring north-west and south-east of the array. In both cases, the waves crossing the array are mostly arriving from the respective hemicycle. However, scattered Love waves arriving from the south can be seen for all earthquakes. Combining the information of all events, it is possible to retrieve the Love wave dispersion curves of the fundamental and the first harmonic mode. The particle motion of the fundamental mode of Rayleigh waves is retrograde and for the first harmonic mode, it is prograde. For both modes, we can also retrieve dispersion and

  2. Analysis of seismic waves crossing the Santa Clara Valley using the three-component MUSIQUE array algorithm

    NASA Astrophysics Data System (ADS)

    Hobiger, Manuel; Cornou, Cécile; Bard, Pierre-Yves; Le Bihan, Nicolas; Imperatori, Walter

    2016-10-01

    We introduce the MUSIQUE algorithm and apply it to seismic wavefield recordings in California. The algorithm is designed to analyse seismic signals recorded by arrays of three-component seismic sensors. It is based on the MUSIC and the quaternion-MUSIC algorithms. In a first step, the MUSIC algorithm is applied in order to estimate the backazimuth and velocity of incident seismic waves and to discriminate between Love and possible Rayleigh waves. In a second step, the polarization parameters of possible Rayleigh waves are analysed using quaternion-MUSIC, distinguishing retrograde and prograde Rayleigh waves and determining their ellipticity. In this study, we apply the MUSIQUE algorithm to seismic wavefield recordings of the San Jose Dense Seismic Array. This array has been installed in 1999 in the Evergreen Basin, a sedimentary basin in the Eastern Santa Clara Valley. The analysis includes 22 regional earthquakes with epicentres between 40 and 600 km distant from the array and covering different backazimuths with respect to the array. The azimuthal distribution and the energy partition of the different surface wave types are analysed. Love waves dominate the wavefield for the vast majority of the events. For close events in the north, the wavefield is dominated by the first harmonic mode of Love waves, for farther events, the fundamental mode dominates. The energy distribution is different for earthquakes occurring northwest and southeast of the array. In both cases, the waves crossing the array are mostly arriving from the respective hemicycle. However, scattered Love waves arriving from the south can be seen for all earthquakes. Combining the information of all events, it is possible to retrieve the Love wave dispersion curves of the fundamental and the first harmonic mode. The particle motion of the fundamental mode of Rayleigh waves is retrograde and for the first harmonic mode, it is prograde. For both modes, we can also retrieve dispersion and ellipticity

  3. Hybrid superconducting magnetic suspensions

    SciTech Connect

    Tixador, P.; Hiebel, P.; Brunet, Y.

    1996-07-01

    Superconductors, especially high T{sub c} ones, are the most attractive materials to design stable and fully passive magnetic suspensions which have to control five degrees of freedom. The hybrid superconducting magnetic suspensions present high performances and a simple cooling mode. They consist of a permanent magnet bearing, stabilized by a suitable magnet-superconductor structure. Several designs are given and compared in terms of forces and stiffnesses. The design of the magnet bearing plays an important part. The superconducting magnetic bearing participates less in levitation but must provide a high stabilizing stiffness. This is achieved by the magnet configuration, a good material in term of critical current density and field cooling. A hybrid superconducting suspension for a flywheel is presented. This system consists of a magnet thrust bearing stabilized by superconductors interacting with an alternating polarity magnet structure. First tests and results are reported. Superconducting materials are magnetically melt-textured YBaCuO.

  4. [Tyndall's hypochromism in suspensions].

    PubMed

    Vekshin, N L; Frolova, M S; Kovalev, V I; Begunova, E A

    2015-01-01

    Since the passage of light through each individual particle in a suspension includes the competition of processes of absorption and scattering, it leads to hypochromism--a decrease in the extinction coefficient. Such "scattering" hypochromism increases with the particle size and its refractive index. Since the Tyndall's light scattering in suspensions, where the size of each particle is substantially larger with respect to wavelengths of light, is not strongly dependent on the wavelength, the absorption spectrum (and excitation spectrum) attenuated almost uniformly at different wavelengths. A simple method to find true extinction coefficients from the absorption (or excitation) spectra of diluted suspensions (not having multiple light scattering) is suggested. The experimental data on spectra of hemoglobin in erythrocytes, actinomycin in DNA and flavins in mitochondria are given.

  5. Suspension Bridge Structural Systems: Cable Suspension & Anchorage; Warren Stiffening ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Suspension Bridge Structural Systems: Cable Suspension & Anchorage; Warren Stiffening Truss; Upper & Lower Decks; Assembled System - San Francisco Oakland Bay Bridge, Spanning San Francisco Bay, San Francisco, San Francisco County, CA

  6. Analysis of condition for uniform lighting generated by array of light emitting diodes with large view angle.

    PubMed

    Qin, Zong; Wang, Kai; Chen, Fei; Luo, Xiaobing; Liu, Sheng

    2010-08-01

    In this research, the condition for uniform lighting generated by array of LEDs with large view angle was studied. The luminous intensity distribution of LED is not monotone decreasing with view angle. A LED with freeform lens was designed as an example for analysis. In a system based on LEDs designed in house with a thickness of 20mm and rectangular arrangement, the condition for uniform lighting was derived and the analytical results demonstrated that the uniformity was not decreasing monotonously with the increasing of LED-to-LED spacing. The illuminance uniformities were calculated with Monte Carlo ray tracing simulations and the uniformity was found to increase with the increasing of certain LED-to-LED spacings anomalously. Another type of large view angle LED and different arrangements were discussed in addition. Both analysis and simulation results showed that the method is available for LED array lighting system design on the basis of large view angle LED..

  7. Exploring "one-shot" kinetics and small molecule analysis using the ProteOn XPR36 array biosensor.

    PubMed

    Bravman, Tsafrir; Bronner, Vered; Lavie, Kobi; Notcovich, Ariel; Papalia, Giuseppe A; Myszka, David G

    2006-11-15

    A ProteOn XPR36 parallel array biosensor was used to characterize the binding kinetics of a set of small molecule/enzyme interactions. Using one injection with the ProteOn's crisscrossing flow path system, we collected response data for six different concentrations of each analyte over six different target protein surfaces. This "one-shot" approach to kinetic analysis significantly improves throughput while generating high-quality data even for low-molecular-mass analytes. We found that the affinities determined for nine sulfonamide-based inhibitors of the enzyme carbonic anhydrase II were highly correlated with the values determined using isothermal titration calorimetry. We also measured the temperature dependence (from 15 to 35 degrees C) of the kinetics for four of the inhibitor/enzyme interactions. Our results illustrate the potential of this new parallel-processing biosensor to increase the speed of kinetic analysis in drug discovery and expand the applications of real-time protein interaction arrays.

  8. Coherent Network Analysis for Continuous Gravitational Wave Signals in a Pulsar Timing Array: Pulsar Phases as Extrinsic Parameters

    NASA Astrophysics Data System (ADS)

    Wang, Yan; Mohanty, Soumya D.; Jenet, Fredrick A.

    2015-12-01

    Supermassive black hole binaries are one of the primary targets of gravitational wave (GW) searches using pulsar timing arrays (PTAs). GW signals from such systems are well represented by parameterized models, allowing the standard Generalized Likelihood Ratio Test (GLRT) to be used for their detection and estimation. However, there is a dichotomy in how the GLRT can be implemented for PTAs: there are two possible ways in which one can split the set of signal parameters for semi-analytical and numerical extremization. The straightforward extension of the method used for continuous signals in ground-based GW searches, where the so-called pulsar phase parameters are maximized numerically, was addressed in an earlier paper. In this paper, we report the first study of the performance of the second approach where the pulsar phases are maximized semi-analytically. This approach is scalable since the number of parameters left over for numerical optimization does not depend on the size of the PTA. Our results show that for the same array size (9 pulsars), the new method performs somewhat worse in parameter estimation, but not in detection, than the previous method where the pulsar phases were maximized numerically. The origin of the performance discrepancy is likely to be in the ill-posedness that is intrinsic to any network analysis method. However, the scalability of the new method allows the ill-posedness to be mitigated by simply adding more pulsars to the array. This is shown explicitly by taking a larger array of pulsars.

  9. Array analysis using circular-wave-front geometry:an application to locate the nearby seismo-volcanic source

    NASA Astrophysics Data System (ADS)

    Almendros, Javier; Ibáñez, Jesús M.; Alguacil, Gerardo; del Pezzo, Edoardo

    1999-01-01

    The zero-lag cross-correlation technique, used for array analysis in the hypothesis of plane waves, has been modified to allow the wave front to be circular. Synthetic tests have been performed to check the capability of the method, which returns the input test data when the source-array distances are not greater than two or three times the array aperture. For this distance range the method furnishes an estimate of the apparent velocity and the epicentral coordinates of the source. For more distant sources the method becomes equivalent to that based on the planar-wave approximation, which gives an estimate of the backazimuth to the source and the apparent velocity. The method has been applied to seismic data recorded at the active volcano located at Deception Island, Antarctica. 35 volcanic long-period events occurring in a small swarm were selected. Results show that the epicentres are close to the array (between 0.4 and 2 km) and aligned in a SW direction, in agreement with one of the main directions of the fracture system of Deception volcano.

  10. Aneuploidy analysis of non-pronuclear embryos from IVF with use of array CGH: a case report.

    PubMed

    Lixin, Deng; Zhifeng, Xiang; Cong, He; Jinzhou, Zhang; Hongbin, Xie

    2014-06-01

    By using array comparative genomic hybridization (array CGH), to analyze the aneuploidy of the single blastomeres from non-pronuclear embryos on cleavage-stage in IVF cycle. Four non-pronuclear embryos were got from an IVF cycle, and the each single cell was biopsied from the four cleavage-stage embryos on the third day after the insemination which was investigated by using array CGH. After the biopsy, all the embryos continued to cleave, and lately entered the morula stage on the fifth day, just one embryo 3 was developed to early blastocyst stage on the sixth day. The four blastomere 24 chromosomes showed one X monomer and three normal XY diploids; the autosome chromosomes of blastomeres were abnormally gained or lost at different chromosome from four embryos, such as Embryo 1 : 49,X (-1, -5, -11, -19, -20, -21, -Y, +3, +6, +7, +8, +10, +13, +14, +16, +17, +18); Embryo 2 : 44,XY (-12, -15); Embryo 3: 47,XY (-3, -8, -9, -21, +7, +17, +18, +19, +20); Embryo 4 : 54,XY (+4, +7, +10, +12, +13, +16, +17, +22). With the use of the array CGH, the aneuploidy analysis could review the abnormal chromosomes of single blastomere from the non-pronuclear embryos, which can harbor the risk of abnormal sex chromosome and autosome chromosomes.

  11. SNP array analysis reveals novel genomic abnormalities including copy neutral loss of heterozygosity in anaplastic oligodendrogliomas.

    PubMed

    Idbaih, Ahmed; Ducray, François; Dehais, Caroline; Courdy, Célia; Carpentier, Catherine; de Bernard, Simon; Uro-Coste, Emmanuelle; Mokhtari, Karima; Jouvet, Anne; Honnorat, Jérôme; Chinot, Olivier; Ramirez, Carole; Beauchesne, Patrick; Benouaich-Amiel, Alexandra; Godard, Joël; Eimer, Sandrine; Parker, Fabrice; Lechapt-Zalcman, Emmanuelle; Colin, Philippe; Loussouarn, Delphine; Faillot, Thierry; Dam-Hieu, Phong; Elouadhani-Hamdi, Selma; Bauchet, Luc; Langlois, Olivier; Le Guerinel, Caroline; Fontaine, Denys; Vauleon, Elodie; Menei, Philippe; Fotso, Marie Janette Motsuo; Desenclos, Christine; Verrelle, Pierre; Verelle, Pierre; Ghiringhelli, François; Noel, Georges; Labrousse, François; Carpentier, Antoine; Dhermain, Frédéric; Delattre, Jean-Yves; Figarella-Branger, Dominique

    2012-01-01

    Anaplastic oligodendrogliomas (AOD) are rare glial tumors in adults with relative homogeneous clinical, radiological and histological features at the time of diagnosis but dramatically various clinical courses. Studies have identified several molecular abnormalities with clinical or biological relevance to AOD (e.g. t(1;19)(q10;p10), IDH1, IDH2, CIC and FUBP1 mutations).To better characterize the clinical and biological behavior of this tumor type, the creation of a national multicentric network, named "Prise en charge des OLigodendrogliomes Anaplasiques (POLA)," has been supported by the Institut National du Cancer (InCA). Newly diagnosed and centrally validated AOD patients and their related biological material (tumor and blood samples) were prospectively included in the POLA clinical database and tissue bank, respectively.At the molecular level, we have conducted a high-resolution single nucleotide polymorphism array analysis, which included 83 patients. Despite a careful central pathological review, AOD have been found to exhibit heterogeneous genomic features. A total of 82% of the tumors exhibited a 1p/19q-co-deletion, while 18% harbor a distinct chromosome pattern. Novel focal abnormalities, including homozygously deleted, amplified and disrupted regions, have been identified. Recurring copy neutral losses of heterozygosity (CNLOH) inducing the modulation of gene expression have also been discovered. CNLOH in the CDKN2A locus was associated with protein silencing in 1/3 of the cases. In addition, FUBP1 homozygous deletion was detected in one case suggesting a putative tumor suppressor role of FUBP1 in AOD.Our study showed that the genomic and pathological analyses of AOD are synergistic in detecting relevant clinical and biological subgroups of AOD. PMID:23071531

  12. SNP Array Analysis Reveals Novel Genomic Abnormalities Including Copy Neutral Loss of Heterozygosity in Anaplastic Oligodendrogliomas

    PubMed Central

    Idbaih, Ahmed; Ducray, François; Dehais, Caroline; Courdy, Célia; Carpentier, Catherine; de Bernard, Simon; Uro-Coste, Emmanuelle; Mokhtari, Karima; Jouvet, Anne; Honnorat, Jérôme; Chinot, Olivier; Ramirez, Carole; Beauchesne, Patrick; Benouaich-Amiel, Alexandra; Godard, Joël; Eimer, Sandrine; Parker, Fabrice; Lechapt-Zalcman, Emmanuelle; Colin, Philippe; Loussouarn, Delphine; Faillot, Thierry; Dam-Hieu, Phong; Elouadhani-Hamdi, Selma; Bauchet, Luc; Langlois, Olivier; Le Guerinel, Caroline; Fontaine, Denys; Vauleon, Elodie; Menei, Philippe; Fotso, Marie Janette Motsuo; Desenclos, Christine; Verelle, Pierre; Ghiringhelli, François; Noel, Georges; Labrousse, François; Carpentier, Antoine; Dhermain, Frédéric; Delattre, Jean-Yves; Figarella-Branger, Dominique

    2012-01-01

    Anaplastic oligodendrogliomas (AOD) are rare glial tumors in adults with relative homogeneous clinical, radiological and histological features at the time of diagnosis but dramatically various clinical courses. Studies have identified several molecular abnormalities with clinical or biological relevance to AOD (e.g. t(1;19)(q10;p10), IDH1, IDH2, CIC and FUBP1 mutations). To better characterize the clinical and biological behavior of this tumor type, the creation of a national multicentric network, named “Prise en charge des OLigodendrogliomes Anaplasiques (POLA),” has been supported by the Institut National du Cancer (InCA). Newly diagnosed and centrally validated AOD patients and their related biological material (tumor and blood samples) were prospectively included in the POLA clinical database and tissue bank, respectively. At the molecular level, we have conducted a high-resolution single nucleotide polymorphism array analysis, which included 83 patients. Despite a careful central pathological review, AOD have been found to exhibit heterogeneous genomic features. A total of 82% of the tumors exhibited a 1p/19q-co-deletion, while 18% harbor a distinct chromosome pattern. Novel focal abnormalities, including homozygously deleted, amplified and disrupted regions, have been identified. Recurring copy neutral losses of heterozygosity (CNLOH) inducing the modulation of gene expression have also been discovered. CNLOH in the CDKN2A locus was associated with protein silencing in 1/3 of the cases. In addition, FUBP1 homozygous deletion was detected in one case suggesting a putative tumor suppressor role of FUBP1 in AOD. Our study showed that the genomic and pathological analyses of AOD are synergistic in detecting relevant clinical and biological subgroups of AOD. PMID:23071531

  13. Upper mantle structure of central and West Antarctica from array analysis of Rayleigh wave phase velocities

    NASA Astrophysics Data System (ADS)

    Heeszel, David S.; Wiens, Douglas A.; Anandakrishnan, Sridhar; Aster, Richard C.; Dalziel, Ian W. D.; Huerta, Audrey D.; Nyblade, Andrew A.; Wilson, Terry J.; Winberry, J. Paul

    2016-03-01

    The seismic velocity structure of Antarctica is important, both as a constraint on the tectonic history of the continent and for understanding solid Earth interactions with the ice sheet. We use Rayleigh wave array analysis methods applied to teleseismic data from recent temporary broadband seismograph deployments to image the upper mantle structure of central and West Antarctica. Phase velocity maps are determined using a two-plane wave tomography method and are inverted for shear velocity using a Monte Carlo approach to estimate three-dimensional velocity structure. Results illuminate the structural dichotomy between the East Antarctic Craton and West Antarctica, with West Antarctica showing thinner crust and slower upper mantle velocity. West Antarctica is characterized by a 70-100 km thick lithosphere, underlain by a low-velocity zone to depths of at least 200 km. The slowest anomalies are beneath Ross Island and the Marie Byrd Land dome and are interpreted as upper mantle thermal anomalies possibly due to mantle plumes. The central Transantarctic Mountains are marked by an uppermost mantle slow-velocity anomaly, suggesting that the topography is thermally supported. The presence of thin, higher-velocity lithosphere to depths of about 70 km beneath the West Antarctic Rift System limits estimates of the regionally averaged heat flow to less than 90 mW/m2. The Ellsworth-Whitmore block is underlain by mantle with velocities that are intermediate between those of the West Antarctic Rift System and the East Antarctic Craton. We interpret this province as Precambrian continental lithosphere that has been altered by Phanerozoic tectonic and magmatic activity.

  14. Parallel multispot smFRET analysis using an 8-pixel SPAD array

    PubMed Central

    Ingargiola, A.; Colyer, R. A.; Kim, D.; Panzeri, F.; Lin, R.; Gulinatti, A.; Rech, I.; Ghioni, M.; Weiss, S.; Michalet, X.

    2012-01-01

    Single-molecule Förster resonance energy transfer (smFRET) is a powerful tool for extracting distance information between two fluorophores (a donor and acceptor dye) on a nanometer scale. This method is commonly used to monitor binding interactions or intra- and intermolecular conformations in biomolecules freely diffusing through a focal volume or immobilized on a surface. The diffusing geometry has the advantage to not interfere with the molecules and to give access to fast time scales. However, separating photon bursts from individual molecules requires low sample concentrations. This results in long acquisition time (several minutes to an hour) to obtain sufficient statistics. It also prevents studying dynamic phenomena happening on time scales larger than the burst duration and smaller than the acquisition time. Parallelization of acquisition overcomes this limit by increasing the acquisition rate using the same low concentrations required for individual molecule burst identification. In this work we present a new two-color smFRET approach using multispot excitation and detection. The donor excitation pattern is composed of 4 spots arranged in a linear pattern. The fluorescent emission of donor and acceptor dyes is then collected and refocused on two separate areas of a custom 8-pixel SPAD array. We report smFRET measurements performed on various DNA samples synthesized with various distances between the donor and acceptor fluorophores. We demonstrate that our approach provides identical FRET efficiency values to a conventional single-spot acquisition approach, but with a reduced acquisition time. Our work thus opens the way to high-throughput smFRET analysis on freely diffusing molecules. PMID:24382989

  15. Magnetic Suspension Technology Workshop

    NASA Technical Reports Server (NTRS)

    Keckler, Claude R. (Editor); Groom, Nelson J. (Editor); Britcher, Colin P. (Editor)

    1993-01-01

    In order to identify the state of magnetic suspension technology in such areas as rotating systems, pointing of experiments or subsystems, payload isolation, and superconducting materials, a workshop on Magnetic Suspension Technology was held at the Langley Research Center in Hampton, Virginia, on 2-4 Feb. 1988. The workshop included five technical sessions in which a total of 24 papers were presented. The technical sessions covered the areas of pointing, isolation, and measurement, rotating systems, modeling and control, and superconductors. A list of attendees is provided.

  16. A critical analysis of air shower structure functions and size spectrum measurements with the NBU air shower array

    NASA Technical Reports Server (NTRS)

    Chaudhuri, N.; Basak, D. K.

    1985-01-01

    A total of 11,000 showers in the size range 10 to the 4 to 10 to the 6 particles so far detected by the NBU air shower array has been analyzed using five different structure functions. A comparison of structure functions in terms: (1) of shower size; and (2) electron density at various core distances has been discussed to indicate the present status of structure functions in air shower analysis.

  17. Metallomics approach to changes in element concentration during differentiation from fibroblasts into adipocytes by element array analysis.

    PubMed

    Ogra, Yasumitsu; Nagasaki, Shu; Yawata, Ayako; Anan, Yasumi; Hamada, Koichi; Mizutani, Akihiro

    2016-04-01

    We aimed to establish an element array analysis that involves the simultaneous detection of all elements in cells and the display of changes in element concentration before and after a cellular event. In this study, we demonstrated changes in element concentration during the differentiation of 3T3-L1 mouse fibroblasts into adipocytes. This metallomics approach yielded unique information of cellular response to physiological and toxicological events.

  18. Magnetic arrays

    DOEpatents

    Trumper, David L.; Kim, Won-jong; Williams, Mark E.

    1997-05-20

    Electromagnet arrays which can provide selected field patterns in either two or three dimensions, and in particular, which can provide single-sided field patterns in two or three dimensions. These features are achieved by providing arrays which have current densities that vary in the windings both parallel to the array and in the direction of array thickness.

  19. Magnetic arrays

    DOEpatents

    Trumper, D.L.; Kim, W.; Williams, M.E.

    1997-05-20

    Electromagnet arrays are disclosed which can provide selected field patterns in either two or three dimensions, and in particular, which can provide single-sided field patterns in two or three dimensions. These features are achieved by providing arrays which have current densities that vary in the windings both parallel to the array and in the direction of array thickness. 12 figs.

  20. Array-CGH analysis and clinical description of 2q37.3 de novo subtelomeric deletion.

    PubMed

    Kitsiou-Tzeli, Sofia; Sismani, Carolina; Ioannides, Marios; Bashiardes, Stavros; Ketoni, Andria; Touliatou, Vassiliki; Kolialexi, Aggeliki; Mavrou, Ariadni; Kanavakis, Emanuel; Patsalis, Philippos C

    2007-01-01

    We report on a 13-year-old girl with normal karyotype and a de novo cryptic terminal deletion of chromosome 2q, detected by subtelomeric FISH analysis. Further investigation with array-CGH analysis using the 1Mb resolution Spectral Chip 2600 (Spectral Genomics) confirmed the deletion and also showed a deletion of four additional clones. No other abnormalities were detected by array-CGH. FISH studies using 8 BAC-probes were performed for fine mapping of the deletion and confirmed the array results. FISH analysis showed that the deletion breakpoint lies between clones RP11-84G18 and RP11-83N2 (physical distance between clones 0.36Mb) and extends to the telomere. The size of the deletion was estimated to be about 6.4-6.7Mb. Clinical findings include: developmental delay, severe behavioural disturbances, growth-pubertal retardation, congenital conductive mild hearing loss, growth hormone deficiency, compensate hypothyroidism, dysmorphic facial features, excessive joint hypermobility, brachymetaphalangy, abnormal dermatoglyphics and a history of neonatal laryngomalacia, hypotonia and umbilical hernia. The phenotype of our patient is in keeping with those of the literature, with the exception of cardiovascular, urogenital, neurological anomalies and eczema, which were not observed. The report of the clinical and molecular presentation of similar cases will allow accurate phenotype-genotype correlation and proper genetic counseling of the family.

  1. Comparative efficiency analysis of fiber-array and conventional beam director systems in volume turbulence.

    PubMed

    Vorontsov, Mikhail; Filimonov, Grigory; Ovchinnikov, Vladimir; Polnau, Ernst; Lachinova, Svetlana; Weyrauch, Thomas; Mangano, Joseph

    2016-05-20

    The performance of two prominent laser beam projection system types is analyzed through wave-optics numerical simulations for various atmospheric turbulence conditions, propagation distances, and adaptive optics (AO) mitigation techniques. Comparisons are made between different configurations of both a conventional beam director (BD) using a monolithic-optics-based Cassegrain telescope and a fiber-array BD that uses an array of densely packed fiber collimators. The BD systems considered have equal input power and aperture diameters. The projected laser beam power inside the Airy size disk at the target plane is used as the performance metric. For the fiber-array system, both incoherent and coherent beam combining regimes are considered. We also present preliminary results of side-by-side atmospheric beam projection experiments over a 7-km propagation path using both the AO-enhanced beam projection system with a Cassegrain telescope and the coherent fiber-array BD composed of 21 densely packed fiber collimators. Both wave-optics numerical simulation and experimental results demonstrate that, for similar system architectures and turbulence conditions, coherent fiber-array systems are more efficient in mitigation of atmospheric turbulence effects and generation of a hit spot of the smallest possible size on a remotely located target. PMID:27411147

  2. Comparative efficiency analysis of fiber-array and conventional beam director systems in volume turbulence.

    PubMed

    Vorontsov, Mikhail; Filimonov, Grigory; Ovchinnikov, Vladimir; Polnau, Ernst; Lachinova, Svetlana; Weyrauch, Thomas; Mangano, Joseph

    2016-05-20

    The performance of two prominent laser beam projection system types is analyzed through wave-optics numerical simulations for various atmospheric turbulence conditions, propagation distances, and adaptive optics (AO) mitigation techniques. Comparisons are made between different configurations of both a conventional beam director (BD) using a monolithic-optics-based Cassegrain telescope and a fiber-array BD that uses an array of densely packed fiber collimators. The BD systems considered have equal input power and aperture diameters. The projected laser beam power inside the Airy size disk at the target plane is used as the performance metric. For the fiber-array system, both incoherent and coherent beam combining regimes are considered. We also present preliminary results of side-by-side atmospheric beam projection experiments over a 7-km propagation path using both the AO-enhanced beam projection system with a Cassegrain telescope and the coherent fiber-array BD composed of 21 densely packed fiber collimators. Both wave-optics numerical simulation and experimental results demonstrate that, for similar system architectures and turbulence conditions, coherent fiber-array systems are more efficient in mitigation of atmospheric turbulence effects and generation of a hit spot of the smallest possible size on a remotely located target.

  3. Analysis of mismatch and shading effects in a photovoltaic array using different technologies

    NASA Astrophysics Data System (ADS)

    Guerrero, J.; Muñoz, Y.; Ibáñez, F.; Ospino, A.

    2014-06-01

    In this paper, we analyze the performance of a photovoltaic array implemented in the Universidad Politécnica de Valencia which consists of modules of different technologies and power, connected in series, in order to quantify the energy losses due to mismatch and the effect of the shadows. To do this, the performance of the modules was measured in operation under ambient conditions with field measurement equipment (AMPROBE Solar Analyzer, Solar - 4000), which allows the extrapolation of measures to standard conditions STC. For the data validation, measures under controlled conditions were taken to some modules in the flash test laboratory of the Institute of Energy Technology ITE of Valencia in Spain. Subsequently the array curves measured were validated with a photovoltaic array model developed in MATLAB-Simulink for the same conditions and technologies. The results of this particular array are lost up to 20% of the energy supplied due to the modules mismatch. The study shows the curves and the energy loss due to shadows modules. This result opens scenarios for conceivable modifications to the PV field configurations today, chosen during the design stage and unchangeable during the operating stage; and gives greater importance to the energy loss by mismatch in the PV array.

  4. Seismo-acoustic analysis of the ocean swell sources observed with Romanian infrasound array and seismic stations

    NASA Astrophysics Data System (ADS)

    Ghica, Daniela; Grecu, Bogdan; Popa, Mihaela

    2015-04-01

    Romanian Plostina infrasound array (IPLOR) is deployed in the central part of the country, in Vrancea region. Presently, IPLOR array configuration includes 6 elements equipped with Chaparral Physics sensors and with aperture of about 2.5 km. For the purpose of assessing the IPLOR performance in observing various types of infrasound sources, over five years of data (since June 2009 to present) were processed. Signal interactive analysis was performed using WinPMCC software. The detection results show that the station response was gradually improved, as the number of array elements increased from three to six, and wind noise reduction conditions were enhanced. A larger number of detected signals and a better array resolution at lower frequency were noticed as well. Microbaroms - the interaction of ocean swell with the atmosphere - represent a relevant type of infrasonic source present in the IPLOR detection plots, for which the signal characterization has been enhanced with the array upgrading process. IPLOR detection capability related to this energetic long-period infrasound waves, which propagate over large distances, shows an alternating behavior, being strongly influenced by the upper atmospheric winds, i.e. seasonally dependent stratospheric winds. The ocean swell can be considered as a seismo-acoustic source, leaving an imprint on both seismic and infrasonic recordings. The interaction with the atmosphere generates infrasound (microbarom), while the interaction with the sea floor emits seismic signal (microseism). Microbaroms have a sinusoidal wave character with a dominant period of 5 s. Due to low damping at this period in stratospheric wave duct, microbaroms are observed over large distance ranges up to a few thousand kilometres. Microseisms occur as an increasing of seismic background noise between 2 and 20 s; in this range, primary and secondary peaks, at 5 and 14 s, are observed. Common broad-band seismic data, recorded with Romanian dense seismic

  5. Origin of microseisms in equatorial and southern Africa from analysis of broadband arrays

    NASA Astrophysics Data System (ADS)

    Euler, G. G.; Wiens, D. A.; Nyblade, A.

    2010-12-01

    Using broadband array noise correlation and frequency-wavenumber analysis, we find evidence for 4 distinct origins of microseisms in the 10-200mHz band: an unusual source of Rayleigh waves at 35-40mHz located in the Bight of Bonny, several abyssal locations with enhanced P-wave production at 100-200mHz, and both coastal and abyssal Rayleigh wave sources that vary in bandwidth. We find no evidence of persistent seismic noise generation on land. Data analyzed were 1Hz vertical component recordings from the Cameroon, Southern Africa, Tanzania, and Ethiopia PASSCAL experiments. The Bonny microseism is characterized by 2 well-defined peaks at 36 & 38mHz and is found to have a location on the continental shelf in the northern portion of the Bight of Bonny. Our preliminary analysis finds that the microseism is well represented as a point source with a frequency-dependent location and horizontal slowness. Additional peaks near 61mHz and 69mHz are associated with increased Rayleigh waves sourced from the Bight of Bonny but are below the frequency range expected for a doubled frequency microseism (70-80mHz). Strong P-wave energy is found to originate from abyssal regions west of Retkjanes Ridge near Greenland, South of the Kerguelen Islands, and in the vicinity of the triple-junction formed by the African, South American & Antarctic plates. We propose that the locations represent optimal sea floor bathymetry for efficient conversion of nonlinearly interfering ocean swell to seismic P waves. Maputo bay and Sofala bay in Mozambique, the Western Cape coast in South Africa, and the North Atlantic are the dominant sources of microseismic Rayleigh waves outside of 35-40mHz. All noise sources identified in our study have a seasonal signature with peak noise generation in the winter months of each location implying their energy is derived from ocean swell of extratropical cyclones.

  6. Modeling and Flight Data Analysis of Spacecraft Dynamics with a Large Solar Array Paddle

    NASA Technical Reports Server (NTRS)

    Iwata, Takanori; Maeda, Ken; Hoshino, Hiroki

    2007-01-01

    The Advanced Land Observing Satellite (ALOS) was launched on January 24 2006 and has been operated successfully since then. This satellite has the attitude dynamics characterized by three large flexible structures, four large moving components, and stringent attitude/pointing stability requirements. In particular, it has one of the largest solar array paddles. Presented in this paper are flight data analyses and modeling of spacecraft attitude motion induced by the large solar array paddle. On orbit attitude dynamics was first characterized and summarized. These characteristic motions associated with the solar array paddle were identified and assessed. These motions are thermally induced motion, the pitch excitation by the paddle drive, and the role excitation. The thermally induced motion and the pitch excitation by the paddle drive were modeled and simulated to verify the mechanics of the motions. The control law updates implemented to mitigate the attitude vibrations are also reported.

  7. Quantitative Analysis of Plasma Ablation Using Inverse Wire Array Z-pinches

    SciTech Connect

    Harvey-Thompson, A. J.; Lebedev, S. V.; Bland, S. N.; Chittenden, J. P.; Hall, G. N.; Ning, C.; Suzuki-Vidal, F.; Bott, S. C.

    2009-01-21

    An inverse (exploding) wire array configuration, in which the wires form a cylinder around a current carrying electrode on axis, was used to study the ablation phase of the pinch. This configuration allows the parameters of the plasma from individual wires of the array to be measured as the ablated plasma streams propagate in the outward radial direction. The density distribution and the evolution of the natural mode of modulation of the ablation was measured with interferometry and soft x-ray imaging. Measurements of the voltage across the array, which in this configuration is determined by the private magnetic flux around the individual wires, allows information on the localisation of the current to be obtained.

  8. CFD Analysis of a Finite Linear Array of Savonius Wind Turbines

    NASA Astrophysics Data System (ADS)

    Belkacem, Belabes; Paraschivoiu, Marius

    2016-09-01

    Vertical axis wind turbines such as Savonius rotors have been shown to be suitable for low wind speeds normally associated with wind resources in all corners of the world. However, the efficiency of the rotor is low. This paper presents results of Computational Fluid Dynamics (CFD) simulations for an array of Savonius rotors that show a significant increase in efficiency. It looks at identifying the effect on the energy yield of a number of turbines placed in a linear array. Results from this investigation suggest that an increase in the energy yield could be achieved which can reach almost two times than the conventional Savonius wind turbine in the case of an array of 11turbines with a distance of 1.4R in between them. The effect of different TSR values and different wind inlet speeds on the farm has been studied for both a synchronous and asynchronous wind farm.

  9. Array CGH analysis of a cohort of Russian patients with intellectual disability.

    PubMed

    Kashevarova, Anna A; Nazarenko, Lyudmila P; Skryabin, Nikolay A; Salyukova, Olga A; Chechetkina, Nataliya N; Tolmacheva, Ekaterina N; Sazhenova, Elena A; Magini, Pamela; Graziano, Claudio; Romeo, Giovanni; Kučinskas, Vaidutis; Lebedev, Igor N

    2014-02-15

    The use of array comparative genomic hybridization (array CGH) as a diagnostic tool in molecular genetics has facilitated the identification of many new microdeletion/microduplication syndromes (MMSs). Furthermore, this method has allowed for the identification of copy number variations (CNVs) whose pathogenic role has yet to be uncovered. Here, we report on our application of array CGH for the identification of pathogenic CNVs in 79 Russian children with intellectual disability (ID). Twenty-six pathogenic or likely pathogenic changes in copy number were detected in 22 patients (28%): 8 CNVs corresponded to known MMSs, and 17 were not associated with previously described syndromes. In this report, we describe our findings and comment on genes potentially associated with ID that are located within the CNV regions. PMID:24291026

  10. Uncertainty analysis for trace-moisture standard realized using a magnetic suspension balance/diffusion-tube humidity generator developed at NMIJ

    NASA Astrophysics Data System (ADS)

    Abe, Hisashi; Kitano, Hiroshi; Matsumoto, Nobuhiro; Takahashi, Chiharu

    2015-12-01

    A method of estimating the uncertainty for a primary trace-moisture standard realized using a magnetic suspension balance/diffusion-tube humidity generator (MSB/DTG) developed at the National Metrology Institute of Japan (NMIJ) is reported in full detail. The results of uncertainty analysis showed that the relative expanded uncertainties of the trace-moisture standard with a coverage factor of k = 2 are 6.9 % to 0.75 % for the amount-of-substance fractions (mole fractions) of water in nitrogen in the range of 12 nmol mol-1 to 1400 nmol mol-1. NMIJ participated in an international comparison of primary trace-moisture standards, and the results of the comparison demonstrated that the method of estimating uncertainty developed in this study is reasonable. The dominant uncertainty was attributable to the performance of the trace-moisture analyzer used to evaluate the uncertainty. We conclude that the development of a trace-moisture analyzer based on cavity ring-down spectroscopy with higher performance is needed to reduce the uncertainty of trace-moisture standards based on an MSB/DTG.

  11. MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data.

    PubMed

    Kilaru, Varun; Barfield, Richard T; Schroeder, James W; Smith, Alicia K; Conneely, Karen N

    2012-03-01

    Recent evidence suggests that DNA methylation changes may underlie numerous complex traits and diseases. The advent of commercial, array-based methods to interrogate DNA methylation has led to a profusion of epigenetic studies in the literature. Array-based methods, such as the popular Illumina GoldenGate and Infinium platforms, estimate the proportion of DNA methylated at single-base resolution for thousands of CpG sites across the genome. These arrays generate enormous amounts of data, but few software resources exist for efficient and flexible analysis of these data. We developed a software package called MethLAB (http://genetics.emory.edu/conneely/MethLAB) using R, an open source statistical language that can be edited to suit the needs of the user. MethLAB features a graphical user interface (GUI) with a menu-driven format designed to efficiently read in and manipulate array-based methylation data in a user-friendly manner. MethLAB tests for association between methylation and relevant phenotypes by fitting a separate linear model for each CpG site. These models can incorporate both continuous and categorical phenotypes and covariates, as well as fixed or random batch or chip effects. MethLAB accounts for multiple testing by controlling the false discovery rate (FDR) at a user-specified level. Standard output includes a spreadsheet-ready text file and an array of publication-quality figures. Considering the growing interest in and availability of DNA methylation data, there is a great need for user-friendly open source analytical tools. With MethLAB, we present a timely resource that will allow users with no programming experience to implement flexible and powerful analyses of DNA methylation data.

  12. Quantitative analysis of spherical microbubble cavity array formation in thermally cured polydimethylsiloxane for use in cell sorting applications.

    PubMed

    Giang, Ut-Binh T; Jones, Meghan C; Kaule, Matthew J; Virgile, Chelsea R; Pu, Qihui; Delouise, Lisa A

    2014-02-01

    Microbubbles are spherical cavities formed in thermally cured polydimethylsiloxane (PDMS) using the gas expansion molding technique. Microbubble cavity arrays are generated by casting PDMS over a silicon wafer mold containing arrays of deep etched pits. To be useful in various high throughput cell culture and sorting applications it is imperative that uniform micron-sized cavities can be formed over large areas (in(2)). This paper provides an in-depth quantitative analysis of the fabrication parameters that effect the microbubble cavity formation efficiency and size. These include (1) the hydrophobic coating of the mold, (2) the mold pit dimensions, (3) the spatial arrangement of the pit openings, (4) the curing temperature of PDMS pre-polymer, (5) PDMS thickness, and (6) the presence and composition of residual gas in the PDMS pre-polymer mixture. Results suggest that the principles of heterogeneous nucleation and gas diffusion govern microbubble cavity formation, and that surface tension prevents detachment of the vapor bubble that forms in the PDMS over the pit. Paramerters are defined that enable the fabrication of large format arrays with uniform cavity size over 6 in(2) with a coefficient-of-variation <10 %. The architecture of the microbubble cavity is uniquely advantageous for cell culture. Large format arrays provide a highly versatile system that can be adapted for use in various high-throughput cell sorting applications. Herein, we demonstrate the use of microbubble cavity arrays to dissect the cellular heterogeneity that exists in a tumorigenic cutaneous squamous cell carcinoma cell line at the single cell level.

  13. Memristor-based programmable logic array (PLA) and analysis as Memristive networks.

    PubMed

    Lee, Kwan-Hee; Lee, Sang-Jin; Kim, Seok-Man; Cho, Kyoungrok

    2013-05-01

    A Memristor theorized by Chua in 1971 has the potential to dramatically influence the way electronic circuits are designed. It is a two terminal device whose resistance state is based on the history of charge flow brought about as the result of the voltage being applied across its terminals and hence can be thought of as a special case of a reconfigurable resistor. Nanoscale devices using dense and regular fabrics such as Memristor cross-bar is promising new architecture for System-on-Chip (SoC) implementations in terms of not only the integration density that the technology can offer but also both improved performance and reduced power dissipation. Memristor has the capacity to switch between high and low resistance states in a cross-bar circuit configuration. The cross-bars are formed from an array of vertical conductive nano-wires cross a second array of horizontal conductive wires. Memristors are realized at the intersection of the two wires in the array through appropriate processing technology such that any particular wire in the vertical array can be connected to a wire in the horizontal array by switching the resistance of a particular intersection to a low state while other cross-points remain in a high resistance state. However the approach introduces a number of challenges. The lack of voltage gain prevents logic being cascaded and voltage level degradation affects robustness of the operation. Moreover the cross-bars introduce sneak current paths when two or more cross points are connected through the switched Memristor. In this paper, we propose Memristor-based programmable logic array (PLA) architecture and develop an analytical model to analyze the logic level on the memristive networks. The proposed PLA architecture has 12 inputs maximum and can be cascaded for more input variables with R(off)/R(on) ratio in the range from 55 to 160 of Memristors.

  14. Genome-Wide Single-Nucleotide Polymorphism Array Analysis Improves Prognostication of Acute Lymphoblastic Leukemia/Lymphoma.

    PubMed

    Wang, Yunhong; Miller, Sue; Roulston, Diane; Bixby, Dale; Shao, Lina

    2016-07-01

    Chromosomal abnormalities are important for the risk stratification of acute lymphoblastic leukemia/lymphoma (ALL). However, approximately 30% of pediatric and 50% of adult patients lack abnormalities with clinical relevance by traditional cytogenetic analysis. We integrated cytogenetic, fluorescence in situ hybridization, and whole-genome single-nucleotide polymorphism array results from 60 consecutive clinical ALL cases. By cytogenetic and/or fluorescence in situ hybridization analyses, recurring abnormalities with clinical relevance were observed in 33 B-cell ALL (B-ALL), including t(9;22), hyperdiploidy, KMT2A translocation, ETV6-RUNX1, intrachromosomal amplification of chromosome 21, near haploidy or low hypodiploidy, and t(8;22). Single-nucleotide polymorphism array analysis found additional aberrations with prognostic or therapeutic implication in 21 B-ALL and two T-cell ALL, including IKZF1 deletion, intrachromosomal amplification of chromosome 21 (one case with a normal karyotype), low hypodiploidy (two cases with a normal karyotype), and one case each with fusion genes ETV6-NTRK3, CRLF2-P2RY8, NUP214-ABL1, and SET-NUP214. IKZF1 deletion was noted in nine B-ALL with t(9;22), one B-ALL with t(4;11), five B-ALL with a normal karyotype, and three B-ALL with nonrecurring karyotypic abnormalities. Combining single-nucleotide polymorphism array with chromosome and fluorescence in situ hybridization assays, the detection rate for clinically significant abnormal results increased from 56% to 75%. Whole-genome single-nucleotide polymorphism array analysis detects cytogenetically undetectable clinically significant aberrations and should be routinely applied at diagnosis of ALL. PMID:27161658

  15. Genome-Wide Single-Nucleotide Polymorphism Array Analysis Improves Prognostication of Acute Lymphoblastic Leukemia/Lymphoma.

    PubMed

    Wang, Yunhong; Miller, Sue; Roulston, Diane; Bixby, Dale; Shao, Lina

    2016-07-01

    Chromosomal abnormalities are important for the risk stratification of acute lymphoblastic leukemia/lymphoma (ALL). However, approximately 30% of pediatric and 50% of adult patients lack abnormalities with clinical relevance by traditional cytogenetic analysis. We integrated cytogenetic, fluorescence in situ hybridization, and whole-genome single-nucleotide polymorphism array results from 60 consecutive clinical ALL cases. By cytogenetic and/or fluorescence in situ hybridization analyses, recurring abnormalities with clinical relevance were observed in 33 B-cell ALL (B-ALL), including t(9;22), hyperdiploidy, KMT2A translocation, ETV6-RUNX1, intrachromosomal amplification of chromosome 21, near haploidy or low hypodiploidy, and t(8;22). Single-nucleotide polymorphism array analysis found additional aberrations with prognostic or therapeutic implication in 21 B-ALL and two T-cell ALL, including IKZF1 deletion, intrachromosomal amplification of chromosome 21 (one case with a normal karyotype), low hypodiploidy (two cases with a normal karyotype), and one case each with fusion genes ETV6-NTRK3, CRLF2-P2RY8, NUP214-ABL1, and SET-NUP214. IKZF1 deletion was noted in nine B-ALL with t(9;22), one B-ALL with t(4;11), five B-ALL with a normal karyotype, and three B-ALL with nonrecurring karyotypic abnormalities. Combining single-nucleotide polymorphism array with chromosome and fluorescence in situ hybridization assays, the detection rate for clinically significant abnormal results increased from 56% to 75%. Whole-genome single-nucleotide polymorphism array analysis detects cytogenetically undetectable clinically significant aberrations and should be routinely applied at diagnosis of ALL.

  16. Clustering in Bubble Suspensions

    NASA Astrophysics Data System (ADS)

    Zenit, Roberto

    2000-11-01

    A monidisperse bubble suspension is studied experimentally for the limit in which the Weber number is small and the Reynolds number is large. For this regime the suspension can be modeled using potential flow theory to describe the dynamics of the interstitial fluid. Complete theoretical descriptions have been composed (Spelt and Sangani, 1998) to model the behavior of these suspensions. Bubble clustering is a natural instability that arises from the potential flow considerations, in which bubbles tend to align in horizontal rafts as they move upwards. The appearance of bubble clusters was recently corroborated experimentally by Zenit et al. (2000), who found that although clusters did appear, their strength was not as strong as the predictions. Experiments involving gravity driven shear flows are used to explain the nature of the clustering observed in these type of flows. Balances of the bubble phase pressure (in terms of a calculated diffusion coefficient) and the Maxwell pressure (from the potential flow description) are presented to predict the stability of the bubble suspension. The predictions are compared with experimental results.

  17. Keep solids in suspension

    SciTech Connect

    Gladki, H.Z.

    1997-10-01

    Mixing is an important operation in the CPI. It is not synonymous with agitation. Mixing is a random distribution into and through one another of two or more initially separate phases. Within that broad definition is the important specialty area of liquid-solid dispersion. This paper addresses the dispersion of solids in lower concentrations that don`t affect the rheological properties of the fluid. The just suspended condition represents the lowest grade of complete suspension, but this level of agitation is the most efficient for solids-liquid agitation. Higher mixing speeds waste energy. Undersized mixers need replacing. The top-entering mixer has a long history in the CPI and the environmental area. Many suspension studies were run with this type. These papers result in empirical correlations for just suspension conditions to scale up from laboratory measurement. Variables considered are the agitation speed, liquid and solids physical properties, solids concentration, system geometry and impeller type. Lately, submersible mixers are becoming more popular, but there are no published sizing methods. This article will explain how to define the critical hydraulic conditions in the tank to reach just solids suspension for a submersible agitator of the type described here as FJFA (Free Jet Flow Agitator).

  18. Stability of Metronidazole Suspensions.

    PubMed

    Donnelly, Ronald F; Ying, James

    2015-01-01

    Metronidazole is an antiprotozoal agent used in the treatment of bacterial and protozoal anaerobic infections. The objectives of this study were to develop concentrated metronidazole suspensions that are inexpensive and easy to prepare and determine the stability of these suspensions after storage in amber polyvinyl chloride bottles at room temperature (23°C) and under refrigeration (5°C). Metronidazole suspensions (50 mg/mL) were prepared from powder using Ora-Blend or simple syrup as the vehicles. Samples were collected in triplicate from each container on days 0, 7, 14, 28, 56, and 93. Samples were assayed using a high-performance liquid chromatography method that had been validated as stability indicating. Color, change in physical appearance, and pH were also monitored at each time interval. There was no apparent change in color or physical appearance. The pH values changed by less than 0.20 units over the 93 days. The stability of metronidazole suspensions compounded from United States Pharmacopeia powder using Ora-Blend or simple syrup and packaged in amber polyvinyl chloride bottles was determined to be 93 days when stored at either room temperature or under refrigeration. PMID:26714365

  19. Alternatives to Student Suspension

    ERIC Educational Resources Information Center

    Robinett, David

    2012-01-01

    Seven years ago, James A. Garfield High School in East Los Angeles set a school record with 613 student suspensions, out of a total enrollment of 5,000 students. The school, made famous by the 1988 film "Stand and Deliver", was no stranger to the high rates of student discipline all too common within the Los Angeles Unified School District.…

  20. Viscosity of colloidal suspensions

    SciTech Connect

    Cohen, E.G.D.; Schepper, I.M. de

    1995-12-31

    Simple expressions are given for the effective Newtonian viscosity as a function of concentration as well as for the effective visco-elastic response as a function of concentration and imposed frequency, of monodisperse neutral colloidal suspensions over the entire fluid range. The basic physical mechanisms underlying these formulae are discussed. The agreement with existing experiments is very good.

  1. Flywheel Magnetic Suspension Developments

    NASA Technical Reports Server (NTRS)

    Palazzolo, Alan; Kenny, Andrew; Sifford, Curtiss; Thomas, Erwin; Bhuiyan, Mohammad; Provenza, Andrew; Kascak, Albert; Montague, Gerald; Lei, Shuliang; Kim, Yeonkyu; Sun, Guangyoung; Chon, ChonHee; Tucker, Randy; Preuss, Jason; Li, Ming; Minihan, Thomas

    2002-01-01

    The paper provides an overview of many areas of the flywheel magnetic suspension (MS) R&D being performed at the Texas A&M Vibration Control and Electromechanics Lab (TAMU-VCEL). This includes system response prediction, actuator optimization and redundancy, controller realizations and stages, sensor enhancements and backup bearing reliability.

  2. Crewbot Suspension Design

    NASA Technical Reports Server (NTRS)

    Wood, Nathan A.

    2005-01-01

    Planetary Surface Robot Work Crews (RWC) represent a new class of construction robots for future deployment in planetary exploration. Rovers currently being used for the RWC platform lack the load carrying capabilities required in regular work. Two new rovers, dubbed CrewBots, being designed in JPL's Planetary Robotics Lab specifically for RWC applications greatly increase the load carrying capabilities of the platform. A major component of the rover design was the design of the rocker type suspension, which increases rover mobility. The design of the suspension for the Crewbots departed from the design of recent rovers. While many previous rovers have used internal bevel gear differentials, the increased load requirements of the Crewbots calls for a more robust system. The solution presented is the use of an external modified three-bar, slider-linkage, rocker-style suspension that increases the moment arm of the differential. The final product is a suspension system capable of supporting the extreme loading cases the RWC platform presents, without consuming a large portion of the Crewbots' internal space.

  3. Electromagnetic analysis of radomes using a spherical wave point dipole source array technique

    NASA Astrophysics Data System (ADS)

    Overfelt, P. L.; White, D. J.

    The present two-dimensional spherical wave point dipole source array technique attempts to combine the simplicity and computational speed of ray-tracing with the accuracy of surface integration; it proceeds by assuming the emanation of spherical waves from a linear dipole array, and ray-traces them to preestablished points on the inner radome wall where the fields are calculated. These fields are modified using the usual 'plane-wave/plane-wall' transmission coefficients, and new fields are computed on the outer wall. The equivalence principle is then used to compute the associated currents that are integrated over the radome shape to yield the magnetic and electric vector potentials.

  4. Cryonic Suspension and the Law.

    ERIC Educational Resources Information Center

    Smith, George P.; Hall, Clare

    1987-01-01

    Analyzes three central problems which adversely affect use, development, and perfection of cryonic suspension of individuals: the extent to which a physician may be guilty of malpractice in assisting with a suspension; the need for a recognition of suspension; and the present effect of the law's anachronistic treatment of estate devolution upon a…

  5. Improved design of micromachined lateral suspensions using intermediate frames

    NASA Astrophysics Data System (ADS)

    Pike, W. T.; Kumar, S.

    2007-08-01

    A complete analysis of the translational and rotational modes of a model lateral suspension is presented. The derived formulae quantify spurious-mode resonant frequencies for cross-axis translation and rotation, and on-axis translation, and can provide very simple expressions for the rejection ratios in terms of the geometry of the suspensions. It is shown that the introduction of intermediate frames, coupling equivalent points of the lateral suspension either side of the suspended mass, can provide much improved dynamics. To investigate the derived relationships, suspensions have been fabricated using through-wafer deep reactive-ion etching (DRIE). Using analysis of the suspension dynamics under the rastered beam of a scanning electron microscope, the various modes of the suspension have been visualized and quantified. These observations are in good agreement with the derived formulae, taking into account the actual profile of the beams fabricated in DRIE. Further finite element analysis across a broad range of suspensions is consistent with the derived formulae. A design heuristic is provided for rapidly optimizing micromachined lateral suspensions by incorporating intermediate frames.

  6. Room acoustics analysis using circular arrays: an experimental study based on sound field plane-wave decomposition.

    PubMed

    Torres, Ana M; Lopez, Jose J; Pueo, Basilio; Cobos, Maximo

    2013-04-01

    Plane-wave decomposition (PWD) methods using microphone arrays have been shown to be a very useful tool within the applied acoustics community for their multiple applications in room acoustics analysis and synthesis. While many theoretical aspects of PWD have been previously addressed in the literature, the practical advantages of the PWD method to assess the acoustic behavior of real rooms have been barely explored so far. In this paper, the PWD method is employed to analyze the sound field inside a selected set of real rooms having a well-defined purpose. To this end, a circular microphone array is used to capture and process a number of impulse responses at different spatial positions, providing angle-dependent data for both direct and reflected wavefronts. The detection of reflected plane waves is performed by means of image processing techniques applied over the raw array response data and over the PWD data, showing the usefulness of image-processing-based methods for room acoustics analysis.

  7. Analysis and performance evaluation of an all-fiber wide range interrogation system for a Bragg grating sensor array

    NASA Astrophysics Data System (ADS)

    Rajan, Ginu; Semenova, Yuliya; Farrell, Gerald

    2009-05-01

    Analysis and performance evaluation of a macro-bend fiber based interrogation system for a Bragg grating sensor array is presented. Due to the characteristic properties of the macro-bend fiber filter such as polarization and temperature dependence and the total noise associated with the ratiometric system, a best fit ratio slope is required to interrogate multiple fiber Bragg gratings (FBGs) whose peak wavelengths are spread over a wide wavelength range, rather than the optimal slope for individual FBGs. In this study, we have used an FBG array with 5 FBGs with peak reflected wavelengths lying between 1525 and 1575 nm. The analysis of the system is carried out and a fiber filter with a slope which covers a wavelength range of 1525-1575 nm is selected which ensures a resolution and accuracy for all the FBG sensors in the array as close as possible to that which would be achieved with a filter with an optimal slope for each FBG. Performance evaluation of the system is carried out and the static strain, dynamic strain, and temperature are measured with the developed interrogation system.

  8. Nanoelectrode array formation by electrolytic nanoparticle impacts

    NASA Astrophysics Data System (ADS)

    Bartlett, T. R.; Holter, J.; Young, N.; Compton, R. G.

    2016-07-01

    We report the fabrication of functional nanoelectrode arrays by the electrolysis of AgBr nanoparticles (NPs) impacting on a glassy carbon electrode from suspension in aqueous solution. The impacted NPs result in Ag NP deposits of similar size to the originating NP, with the coverage of these arrays easily controlled by the time of the deposition step. The NPs constituting the array are deposited randomly across the surface with little aggregation or agglomeration. The fabricated arrays are themselves electrochemically active, mediating the reduction of hydrogen peroxide, H2O2.

  9. A comparison between two pneumatic suspension architectures

    NASA Astrophysics Data System (ADS)

    Quaglia, G.; Scopesi, M.; Franco, W.

    2012-04-01

    The aim of this work is to assess and compare the mathematical models of two pneumatic suspension architectures and show how they can converge, after appropriate simplifications, to a general linear form. After making this model dimensionless, it will be used to study, with a transmissibility analysis, the behaviour of a mono-suspension (quarter-car model). Finally, an example of a design process will be shown to highlight the strengths and weaknesses of both architectures and to provide the reader with a practical design tool.

  10. Association between chromosomal aberration of COX8C and tethered spinal cord syndrome: array-based comparative genomic hybridization analysis

    PubMed Central

    Zhao, Qiu-jiong; Bai, Shao-cong; Cheng, Cheng; Tao, Ben-zhang; Wang, Le-kai; Liang, Shuang; Yin, Ling; Hang, Xing-yi; Shang, Ai-jia

    2016-01-01

    Copy number variations have been found in patients with neural tube abnormalities. In this study, we performed genome-wide screening using high-resolution array-based comparative genomic hybridization in three children with tethered spinal cord syndrome and two healthy parents. Of eight copy number variations, four were non-polymorphic. These non-polymorphic copy number variations were associated with Angelman and Prader-Willi syndromes, and microcephaly. Gene function enrichment analysis revealed that COX8C, a gene associated with metabolic disorders of the nervous system, was located in the copy number variation region of Patient 1. Our results indicate that array-based comparative genomic hybridization can be used to diagnose tethered spinal cord syndrome. Our results may help determine the pathogenesis of tethered spinal cord syndrome and prevent occurrence of this disease.

  11. Association between chromosomal aberration of COX8C and tethered spinal cord syndrome: array-based comparative genomic hybridization analysis

    PubMed Central

    Zhao, Qiu-jiong; Bai, Shao-cong; Cheng, Cheng; Tao, Ben-zhang; Wang, Le-kai; Liang, Shuang; Yin, Ling; Hang, Xing-yi; Shang, Ai-jia

    2016-01-01

    Copy number variations have been found in patients with neural tube abnormalities. In this study, we performed genome-wide screening using high-resolution array-based comparative genomic hybridization in three children with tethered spinal cord syndrome and two healthy parents. Of eight copy number variations, four were non-polymorphic. These non-polymorphic copy number variations were associated with Angelman and Prader-Willi syndromes, and microcephaly. Gene function enrichment analysis revealed that COX8C, a gene associated with metabolic disorders of the nervous system, was located in the copy number variation region of Patient 1. Our results indicate that array-based comparative genomic hybridization can be used to diagnose tethered spinal cord syndrome. Our results may help determine the pathogenesis of tethered spinal cord syndrome and prevent occurrence of this disease. PMID:27651783

  12. Association between chromosomal aberration of COX8C and tethered spinal cord syndrome: array-based comparative genomic hybridization analysis.

    PubMed

    Zhao, Qiu-Jiong; Bai, Shao-Cong; Cheng, Cheng; Tao, Ben-Zhang; Wang, Le-Kai; Liang, Shuang; Yin, Ling; Hang, Xing-Yi; Shang, Ai-Jia

    2016-08-01

    Copy number variations have been found in patients with neural tube abnormalities. In this study, we performed genome-wide screening using high-resolution array-based comparative genomic hybridization in three children with tethered spinal cord syndrome and two healthy parents. Of eight copy number variations, four were non-polymorphic. These non-polymorphic copy number variations were associated with Angelman and Prader-Willi syndromes, and microcephaly. Gene function enrichment analysis revealed that COX8C, a gene associated with metabolic disorders of the nervous system, was located in the copy number variation region of Patient 1. Our results indicate that array-based comparative genomic hybridization can be used to diagnose tethered spinal cord syndrome. Our results may help determine the pathogenesis of tethered spinal cord syndrome and prevent occurrence of this disease. PMID:27651783

  13. Intracellular delivery of molecules using microfabricated nanoneedle arrays.

    PubMed

    Park, Seonhee; Choi, Seong-O; Paik, Seung-joon; Choi, Seungkeun; Allen, Mark; Prausnitz, Mark

    2016-02-01

    Many bioactive molecules have intracellular targets, but have difficulty crossing the cell membrane to reach those targets. To address this difficulty, we fabricated arrays of nanoneedles to gently and simultaneously puncture 10(5) cells and thereby provide transient pathways for transport of molecules into the cells. The nanoneedles were microfabricated by etching silicon to create arrays of nanoneedles measuring 12 μm in height, tapering to a sharp tip less than 30 nm wide to facilitate puncture into cells and spaced 10 μm apart in order to have at least one nanoneedle puncture each cell in a confluent monolayer. These nanoneedles were used for intracellular delivery in two ways: puncture loading, in which nanoneedle arrays were pressed into cell monolayers, and centrifuge loading, in which cells in suspension were spun down onto nanoneedle arrays. The effects on intracellular uptake and cell viability were determined as a function of nanoneedle length and sharpness, puncture force and duration, and molecular weight of the molecule delivered. Under optimal conditions, intracellular uptake was seen in approximately 50 % of cells while maintaining high cell viability. Overall, this study provides a comparative analysis of intracellular delivery using nanoneedle arrays by two different loading methods over a range of operating parameters. PMID:26797026

  14. Accuracy and Resolution Analysis of a Direct Resistive Sensor Array to FPGA Interface.

    PubMed

    Oballe-Peinado, Óscar; Vidal-Verdú, Fernando; Sánchez-Durán, José A; Castellanos-Ramos, Julián; Hidalgo-López, José A

    2016-01-01

    Resistive sensor arrays are formed by a large number of individual sensors which are distributed in different ways. This paper proposes a direct connection between an FPGA and a resistive array distributed in M rows and N columns, without the need of analog-to-digital converters to obtain resistance values in the sensor and where the conditioning circuit is reduced to the use of a capacitor in each of the columns of the matrix. The circuit allows parallel measurements of the N resistors which form each of the rows of the array, eliminating the resistive crosstalk which is typical of these circuits. This is achieved by an addressing technique which does not require external elements to the FPGA. Although the typical resistive crosstalk between resistors which are measured simultaneously is eliminated, other elements that have an impact on the measurement of discharge times appear in the proposed architecture and, therefore, affect the uncertainty in resistance value measurements; these elements need to be studied. Finally, the performance of different calibration techniques is assessed experimentally on a discrete resistor array, obtaining for a new model of calibration, a maximum relative error of 0.066% in a range of resistor values which correspond to a tactile sensor.

  15. Accuracy and Resolution Analysis of a Direct Resistive Sensor Array to FPGA Interface.

    PubMed

    Oballe-Peinado, Óscar; Vidal-Verdú, Fernando; Sánchez-Durán, José A; Castellanos-Ramos, Julián; Hidalgo-López, José A

    2016-01-01

    Resistive sensor arrays are formed by a large number of individual sensors which are distributed in different ways. This paper proposes a direct connection between an FPGA and a resistive array distributed in M rows and N columns, without the need of analog-to-digital converters to obtain resistance values in the sensor and where the conditioning circuit is reduced to the use of a capacitor in each of the columns of the matrix. The circuit allows parallel measurements of the N resistors which form each of the rows of the array, eliminating the resistive crosstalk which is typical of these circuits. This is achieved by an addressing technique which does not require external elements to the FPGA. Although the typical resistive crosstalk between resistors which are measured simultaneously is eliminated, other elements that have an impact on the measurement of discharge times appear in the proposed architecture and, therefore, affect the uncertainty in resistance value measurements; these elements need to be studied. Finally, the performance of different calibration techniques is assessed experimentally on a discrete resistor array, obtaining for a new model of calibration, a maximum relative error of 0.066% in a range of resistor values which correspond to a tactile sensor. PMID:26840321

  16. Accuracy and Resolution Analysis of a Direct Resistive Sensor Array to FPGA Interface

    PubMed Central

    Oballe-Peinado, Óscar; Vidal-Verdú, Fernando; Sánchez-Durán, José A.; Castellanos-Ramos, Julián; Hidalgo-López, José A.

    2016-01-01

    Resistive sensor arrays are formed by a large number of individual sensors which are distributed in different ways. This paper proposes a direct connection between an FPGA and a resistive array distributed in M rows and N columns, without the need of analog-to-digital converters to obtain resistance values in the sensor and where the conditioning circuit is reduced to the use of a capacitor in each of the columns of the matrix. The circuit allows parallel measurements of the N resistors which form each of the rows of the array, eliminating the resistive crosstalk which is typical of these circuits. This is achieved by an addressing technique which does not require external elements to the FPGA. Although the typical resistive crosstalk between resistors which are measured simultaneously is eliminated, other elements that have an impact on the measurement of discharge times appear in the proposed architecture and, therefore, affect the uncertainty in resistance value measurements; these elements need to be studied. Finally, the performance of different calibration techniques is assessed experimentally on a discrete resistor array, obtaining for a new model of calibration, a maximum relative error of 0.066% in a range of resistor values which correspond to a tactile sensor. PMID:26840321

  17. Design, microfabrication, and analysis of micrometer-sized cylindrical ion trap arrays.

    PubMed

    Cruz, D; Chang, J P; Fico, M; Guymon, A J; Austin, D E; Blain, M G

    2007-01-01

    A description of the design and microfabrication of arrays of micrometer-scale cylindrical ion traps is offered. Electrical characterization and initial ion trapping experiments with a massively parallel array of 5 microm internal radius (r(0)) sized cylindrical ion traps (CITs) are also described. The ion trap, materials, and design are presented and shown to be critical in achieving minimal trapping potential while maintaining minimal power consumption. The ion traps, fabricated with metal electrodes, have inner radii of 1, 2, 5, and 10 microm and range from 5 to 24 microm in height. The electrical characteristics of packaged ion trap arrays were measured with a vector network analyzer. The testing focused on trapping toluene (C(7)H(8)), mass 91, 92, or 93 amu, in the 5 microm sized CITs. Ions were formed via electron impact ionization and were ejected by turning off the rf voltage applied to the ring electrode; a current signal was collected at this time. Optimum ionization and trapping conditions, such as a sufficient pseudopotential well and high ionization to ion loss rate ratio (as determined by simulation), proved to be difficult to establish due to the high device capacitance and the presence of exposed dielectric material in the trapping region. However, evidence was obtained suggesting the trapping of ions in 1%-15% of the traps in the array. These first tests on micrometer-scale CITs indicated the necessary materials and device design modifications for realizing ultrasmall and low power ion traps.

  18. Performance analysis of underwater hydrophone arrays in tracking maneuvering sea-surface targets

    NASA Astrophysics Data System (ADS)

    Hernandez, Marcel L.; Goddard, Nick

    2005-09-01

    In this paper, we assess the capability of underwater hydrophone (UH) arrays to locate and track manoeuvring targets. A UH array is a horizontal line array of omnidirectional pressure sensors that is deployed on the seabed. The measurements at each UH array are then affected by two idiosyncrasies, termed "source direction ambiguity" and "coning error". In this paper, the posterior Cramer-Rao lower bound(PCRLB) is used as the measure of system performance, providing a bound on the optimal achievable accuracy of target state estimation. We demonstrate the impact of the measurement idiosyncrasies on the PCRLB, with the bound shown to be greater (poorer performance) than when using standard bearings-only sensors. We also include clutter (i.e. we allow each measurement to be either target generated or a false positive), as well as both state-dependent measurement errors and a state-dependent probability of detection. Building on previous work, we show that the measurement origin uncertainty can again be expressed as an information reduction factor (IRF), with this IRF now shown to be a function of both the target range and orientation in relation to each UH array. We consider simulated scenarios that contain features characteristic of recent sea trials conducted by QinetiQ Ltd. The two key features of the trial scenarios is that we have very sparse prior knowledge, and each target has the potential to perform a series of manoeuvres. We use a recent PCRLB formulation for tracking manoeuvring targets that approximates the potentially multi-modal target distribution using a best-fitting Gaussian distribution. We present simulation results for multi-sensor scenarios, demonstrating that this is indeed a difficult tracking problem. Tracking is particularly difficult when the target crosses the line of the UH arrays, making triangulation difficult; and when the target is in the "end-fire" of at least one UH array. It is also difficult to detect and triangulate distant targets

  19. Cosmic Infrared Background Fluctuations in Deep Spitzer Infrared Array Camera Images: Data Processing and Analysis

    NASA Technical Reports Server (NTRS)

    Arendt, Richard; Kashlinsky, A.; Moseley, S.; Mather, J.

    2010-01-01

    This paper provides a detailed description of the data reduction and analysis procedures that have been employed in our previous studies of spatial fluctuation of the cosmic infrared background (CIB) using deep Spitzer Infrared Array Camera observations. The self-calibration we apply removes a strong instrumental signal from the fluctuations that would otherwise corrupt the results. The procedures and results for masking bright sources and modeling faint sources down to levels set by the instrumental noise are presented. Various tests are performed to demonstrate that the resulting power spectra of these fields are not dominated by instrumental or procedural effects. These tests indicate that the large-scale ([greater, similar]30') fluctuations that remain in the deepest fields are not directly related to the galaxies that are bright enough to be individually detected. We provide the parameterization of these power spectra in terms of separate instrument noise, shot noise, and power-law components. We discuss the relationship between fluctuations measured at different wavelengths and depths, and the relations between constraints on the mean intensity of the CIB and its fluctuation spectrum. Consistent with growing evidence that the [approx]1-5 [mu]m mean intensity of the CIB may not be as far above the integrated emission of resolved galaxies as has been reported in some analyses of DIRBE and IRTS observations, our measurements of spatial fluctuations of the CIB intensity indicate the mean emission from the objects producing the fluctuations is quite low ([greater, similar]1 nW m-2 sr-1 at 3-5 [mu]m), and thus consistent with current [gamma]-ray absorption constraints. The source of the fluctuations may be high-z Population III objects, or a more local component of very low luminosity objects with clustering properties that differ from the resolved galaxies. Finally, we discuss the prospects of the upcoming space-based surveys to directly measure the epochs

  20. A superconducting large-angle magnetic suspension

    NASA Technical Reports Server (NTRS)

    Downer, James; Goldie, James; Torti, Richard

    1991-01-01

    The component technologies were developed required for an advanced control moment gyro (CMG) type of slewing actuator for large payloads. The key component of the CMG is a large-angle magnetic suspension (LAMS). The LAMS combines the functions of the gimbal structure, torque motors, and rotor bearings of a CMG. The LAMS uses a single superconducting source coil and an array of cryoresistive control coils to produce a specific output torque more than an order of magnitude greater than conventional devices. The designed and tested LAMS system is based around an available superconducting solenoid, an array of twelve room-temperature normal control coils, and a multi-input, multi-output control system. The control laws were demonstrated for stabilizing and controlling the LAMS system.

  1. Analysis of traveling-wave electro-osmotic pumping with double-sided electrode arrays

    NASA Astrophysics Data System (ADS)

    Yeh, Hung-Chun; Yang, Ruey-Jen; Luo, Win-Jet

    2011-05-01

    In this paper, a series of numerical simulations was performed to investigate the pumping performance of electro-osmotic micropumps containing electrode arrays patterned on the upper and lower sides of a microchannel. The simulations have been analyzed with a linear electro-osmotic model based upon the Debye-Hückel theory of the double layer. The potential drop across the diffuse layer is assumed to be less than 25 mV (kBT/e), and there is a linear response between the surface charge and the voltage drop across the double layer. The double layer is not resolved but is lumped into effective parameters that are imported from the Debye-Hückel and Stern layers. We examined the effects of the relative positioning of the electrodes in the opposing arrays (i.e., symmetrical or staggered), and the phase lag and the angular frequency of the alternating current (ac) signals applied to the electrodes within the two arrays. A critical height of the microchannel was observed, below which the interactions of the applied electrical potentials on the walls became significant. The optimum pumping effect was obtained when the electrode arrays were symmetrical to one another around the centerline of the channel and were activated by ac potentials with a 0° phase shift. The corresponding angular frequency of the maximum pumping velocity for different phase shifts of the applied ac signals was also determined. Overall, the simulation results presented in this paper provide a useful insight into the optimal design parameters and operating conditions for micropumps containing two arrays of microelectrodes on the microchannel walls.

  2. The Structure of Plant Cell Walls: I. The Macromolecular Components of the Walls of Suspension-cultured Sycamore Cells with a Detailed Analysis of the Pectic Polysaccharides.

    PubMed

    Talmadge, K W; Keegstra, K; Bauer, W D; Albersheim, P

    1973-01-01

    This is the first in a series of papers dealing with the structure of cell walls isolated from suspension-cultured sycamore cells (Acer pseudoplatanus). These studies have been made possible by the availability of purified hydrolytic enzymes and by recent improvements in the techniques of methylation analysis. These techniques have permitted us to identify and quantitate the macromolecular components of sycamore cell walls. These walls are composed of 10% arabinan, 2% 3,6-linked arabinogalactan, 23% cellulose, 9% oligo-arabinosides (attached to hydroxyproline), 8% 4-linked galactan, 10% hydroxyproline-rich protein, 16% rhamnogalacturonan, and 21% xyloglucan.The structures of the pectic polymers (the neutral arabinan, the neutral galactan, and the acidic rhamnogalacturonan) were obtained, in part, by methylation analysis of fragments of these polymers which were released from the sycamore walls by the action of a highly purified endopolygalacturonase. The data suggest a branched arabinan and a linear 4-linked galactan occurring as side chains on the rhamnogalacturonan. Small amounts or pieces of a xyloglucan, the wall hemicellulose, appear to be covalently linked to some of the galactan chains. Thus, the galactan appears to serve as a bridge between the xyloglucan and rhamnogalacturonan components of the wall.The rhamnogalacturonan consists of an alpha-(1 --> 4)-linked galacturonan chain which is interspersed with 2-linked rhamnosyl residues. The rhamnosyl residues are not randomly distributed in the chain but probably occur in units of rhamnosyl- (1 --> 4)-galacturonosyl- (1 --> 2)-rhamnosyl. This sequence appears to alternate with a homogalacturonan sequence containing approximately 8 residues of 4-linked galacturonic acid. About half of the rhamnosyl residues are branched, having a substituent attached to carbon 4. This is likely to be the site of attachment of the 4-linked galactan.The hydroxyprolyl oligo-arabinosides of the hydroxyproline-rich glycoprotein

  3. High-resolution melting curve analysis for genotyping of common SNP in MTHFR gene using fixed-cell suspension.

    PubMed

    Sinthuwiwat, Thivaratana; Poowasanpetch, Phanasit; Wongngamrungroj, Angsana; Promso, Somying; Auewarakul, Chirayu; Mooney, Sean; Tocharoentanaphol, Chintana

    2008-01-01

    Genetic variation in MTHFR might explain the interindividual differences in both therapeutic and toxic responses to the treatment of cancer and rheumatoid arthritis with methotrexate, and can be involved in the sensitivity of developing diseases like cancer and congenital anomalies. We investigated the common sequence variation, C677T, in the MTHFR gene in fixed-cell specimens archived after chromosomal analysis using a novel gene scanning method based on post PCR analysis of high-resolution melting curves (HRM). These fixed specimens were stored after routine chromosomal analysis for 1 year at -20 degrees C in a 3:1 methanol:acetic acid solution. The method revealed a distinct pattern between homozygous and heterozygous alleles. Sensitivity and specificity of the HRM based method were comparable to that obtained by a hybridization probe. While the success rate for genotyping of a common SNP in MTHFR was similar to the hybridization probe approach, the HRM based method was more cost-effective and had a shorter turnaround time. PMID:18725286

  4. Rheological behavior of oxide nanopowder suspensions

    NASA Astrophysics Data System (ADS)

    Cinar, Simge

    Ceramic nanopowders offer great potential in advanced ceramic materials and many other technologically important applications. Because a material's rheological properties are crucial for most processing routes, control of the rheological behavior has drawn significant attention in the recent past. The control of rheological behavior relies on an understanding of how different parameters affect the suspension viscosities. Even though the suspension stabilization mechanisms are relatively well understood for sub-micron and micron size particle systems, this knowledge cannot be directly transferred to nanopowder suspensions. Nanopowder suspensions exhibit unexpectedly high viscosities that cannot be explained with conventional mechanisms and are still a topic of investigation. This dissertation aims to establish the critical parameters governing the rheological behavior of concentrated oxide nanopowder suspensions, and to elucidate the mechanisms by which these parameters control the rheology of these suspensions. Aqueous alumina nanopowders were chosen as a model system, and the findings were extrapolated to other oxide nanopowder systems such as zirconia, yttria stabilized zirconia, and titania. Processing additives such as fructose, NaCl, HCl, NaOH, and ascorbic acid were used in this study. The effect of solids content and addition of fructose on the viscosity of alumina nanopowder suspensions was investigated by low temperature differential scanning calorimetry (LT-DSC), rheological, and zeta potential measurements. The analysis of bound water events observed in LT-DSC revealed useful information regarding the rheological behavior of nanopowder suspensions. Because of the significance of interparticle interactions in nanopowder suspensions, the electrostatic stabilization was investigated using indifferent and potential determining ions. Different mechanisms, e.g., the effect of the change in effective volume fraction caused by fructose addition and electrostatic

  5. Optical position measurement for a Large Gap Magnetic Suspension System

    NASA Technical Reports Server (NTRS)

    Welch, Sharon S.; Shelton, Kevin J.; Clemmons, James I.

    1991-01-01

    This paper describes the design of an optical position measurement system which is being built as part of the NASA Langley Large Gap Magnetic Suspension System (LGMSS). The LGMSS is a five degree-of-freedom, large-gap magnetic suspension system which is being built for Langley Research Center as part of the Advanced Controls Test Facility (ACTF). The LGMSS consists of a planar array of electromagnets which levitate and position a cylindrically shaped model containing a permanent magnet core. The optical position measurement system provides information on the location and orientation of the model to the LGMSS control system to stabilize levitation of the model.

  6. Solar array deployment mechanism

    NASA Astrophysics Data System (ADS)

    Calassa, Mark C.; Kackley, Russell

    1995-05-01

    This paper describes a Solar Array Deployment Mechanism (SADM) used to deploy a rigid solar array panel on a commercial spacecraft. The application required a deployment mechanism design that was not only lightweight, but also could be produced and installed at the lowest possible cost. This paper covers design, test, and analysis of a mechanism that meets these requirements.

  7. Solar array deployment mechanism

    NASA Technical Reports Server (NTRS)

    Calassa, Mark C.; Kackley, Russell

    1995-01-01

    This paper describes a Solar Array Deployment Mechanism (SADM) used to deploy a rigid solar array panel on a commercial spacecraft. The application required a deployment mechanism design that was not only lightweight, but also could be produced and installed at the lowest possible cost. This paper covers design, test, and analysis of a mechanism that meets these requirements.

  8. Kokkos Array

    SciTech Connect

    Edwards Daniel Sunderland, Harold Carter

    2012-09-12

    The Kokkos Array library implements shared-memory array data structures and parallel task dispatch interfaces for data-parallel computational kernels that are performance-portable to multicore-CPU and manycore-accelerator (e.g., GPGPU) devices.

  9. Photomixing of chlamydomonas rheinhardtii suspensions

    NASA Astrophysics Data System (ADS)

    Dervaux, Julien; Capellazzi Resta, Marina; Abou, Bérengère; Brunet, Philippe

    2014-11-01

    Chlamydomonas rheinhardtii is a fast swimming unicellular alga able to bias its swimming direction in gradients of light intensity, an ability know as phototaxis. We have investigated experimentally both the swimming behavior of individual cells and the macroscopic response of shallow suspensions of these micro-organisms in response to a localized light source. At low light intensity, algae exhibit positive phototaxis and accumulate beneath the excitation light. In weakly concentrated thin layers, the balance between phototaxis and cell motility results in steady symmetrical patterns compatible with a purely diffusive model using effective diffusion coefficients extracted from the analysis of individual cell trajectories. However, at higher cell density and layer depth, collective effects induce convective flows around the light source. These flows disturb the cell concentration patterns which spread and may then becomes unstable. Using large passive tracer particles, we have characterized the velocity fields associated with this forced bioconvection and their dependence on the cell density and layer depth. By tuning the light distribution, this mechanism of photo-bioconvection allows a fine control over the local fluid flows, and thus the mixing efficiency, in algal suspensions.

  10. Migrational Instabilities in Particle Suspensions

    NASA Technical Reports Server (NTRS)

    Goddard, Joe D.

    1996-01-01

    This work deals with an instability arising from the shear-induced migration of particles in dense suspensions coupled with a dependence of viscosity on particle concentration. The analysis summarized here treats the inertialess (Re = O) linear stability of homogeneous simple shear flows for a Stokesian suspension model of the type proposed by Leighton and Acrivos (1987). Depending on the importance of shear-induced migration relative to concentration-driven diffusion, this model admits short-wave instability arising from wave-vector stretching by the base flow and evolving into particle-depleted shear bands. Moreover, this instability in the time-dependent problem corresponds to loss of ellipticity in the associated static problem (Re = O, Pe = O). While the isotropic version of the Leighton-Acrivos model is found to be stable with their experimentally determined parameters for simple shear, it is known that the stable model does not give a good quantitative description of particle clustering in the core of pipe flow (Nott and Brady 1994). This leads to the conjecture that an appropriate variant on the above model could explain such clustering as a two-phase bifurcation in the base flow.

  11. Systolic arrays

    SciTech Connect

    Moore, W.R.; McCabe, A.P.H.; Vrquhart, R.B.

    1987-01-01

    Selected Contents of this book are: Efficient Systolic Arrays for the Solution of Toeplitz Systems, The Derivation and Utilization of Bit Level Systolic Array Architectures, an Efficient Systolic Array for Distance Computation Required in a Video-Codec Based Motion-Detection, On Realizations of Least-Squares Estimation and Kalman Filtering by Systolic Arrays, and Comparison of Systolic and SIMD Architectures for Computer Vision Computations.

  12. Nanocylinder arrays

    DOEpatents

    Tuominen, Mark; Schotter, Joerg; Thurn-Albrecht, Thomas; Russell, Thomas P.

    2009-08-11

    Pathways to rapid and reliable fabrication of nanocylinder arrays are provided. Simple methods are described for the production of well-ordered arrays of nanopores, nanowires, and other materials. This is accomplished by orienting copolymer films and removing a component from the film to produce nanopores, that in turn, can be filled with materials to produce the arrays. The resulting arrays can be used to produce nanoscale media, devices, and systems.

  13. Nanocylinder arrays

    DOEpatents

    Tuominen, Mark; Schotter, Joerg; Thurn-Albrecht, Thomas; Russell, Thomas P.

    2007-03-13

    Pathways to rapid and reliable fabrication of nanocylinder arrays are provided. Simple methods are described for the production of well-ordered arrays of nanopores, nanowires, and other materials. This is accomplished by orienting copolymer films and removing a component from the film to produce nanopores, that in turn, can be filled with materials to produce the arrays. The resulting arrays can be used to produce nanoscale media, devices, and systems.

  14. Finite Element Analysis and Failure Mode Characterization of Pyramidal Fin Arrays Produced by Masked Cold Gas Dynamic Spray

    NASA Astrophysics Data System (ADS)

    Cormier, Yannick; Dupuis, Philippe; Jodoin, Bertrand; Ghaei, Abbas

    2015-12-01

    This work evaluates the shear strength of pyramidal fin arrays made from various feedstock materials (cylindrical aluminum, spherical nickel, and cylindrical stainless steel 304 powders) deposited on an Al6061-T6 substrate. Higher shear strength was measured for the nickel fin array followed by the stainless steel 304 and the aluminum arrays. Different failure modes were observed by inspecting the fracture surfaces under Scanning Electron Microscope. Deposition between the cold sprayed nickel and stainless fins was detected whereas dimples were noticed on the substrate between the fins when aluminum is used as the feedstock material. A numerical simulation of normal and angled impacts using the high strain rate Preston-Tonks-Wallace model was carried out in order to have a better understanding of the experimental results. The equivalent plastic strain (PEEQ) obtained from the finite element analysis at normal impact correlates with the different shear strengths measured experimentally. Furthermore, even if a higher PEEQ was observed for angled impacts compared to its normal collision counterpart, it is suggested that the particles may not bond because of the rotational restitution momentum caused by the tangential friction generated during angled impacts. This rotational restitution momentum was not detected for particle impacts normal to the substrate surface.

  15. Suspension for automotive vehicles

    SciTech Connect

    Pierce, W.C.

    1986-10-07

    This patent describes a vehicle suspension system for mounting ground-engaging wheels to a vehicle frame. The suspension system comprises at least two substantially rigid arms secured to opposite sides of the frame through substantially aligned pivot mounts; at least one wheel-carrying axle between the arms; and a bracket means securing the at least one axle to each of the arms. The improvements described here is in each of the bracket means comprising: an axle plate means rigidly secured to the axle and having an elongated planar complementary surface at least partially wrapping around the axle; two spaced connecting plates secured transversely to the axle plate means and to one of the arms; and a bracing means comprising at least one curved gusset plate rigidly and angularly secured to and between the axle plate means and one of the connecting plates.

  16. Analysis of phase shift of surface plasmon polaritons at metallic subwavelength hole arrays

    NASA Astrophysics Data System (ADS)

    Li, Jiang-Yan; Qiu, Kang-Sheng; Ma, Hai-Qiang

    2014-10-01

    We present the transmission spectra of light transmitting a metallic thin film perforated with differently shaped subwavelength hole arrays, which are calculated by a plane-wave-based transfer matrix method. We analyze the transmission peak positions and the phase-shift angles of different surface plasmon polariton (SPP) modes by using the microscopic theoretical model proposed by Haitao Liu and Philippe Lalanne [Liu Haitao and Lalanne Philippe 2008 Nature 452 728], in which the phase shift properties of the SPPs scattered by the subwavelength hole arrays are considered. The results show that the transmission peak position and the minus phase shift angle of the SPP increase as the hole size increases. On the other hand, the effective dielectric constant of the metallic film can be deduced by the microscopic theoretical model.

  17. Covariance analysis and phase ambiguity resolution for a linear interferometer antenna array

    NASA Astrophysics Data System (ADS)

    Johnson, James Andrew

    This thesis explores the application of mathematical techniques for estimating the angle of arrival (AOA) using a receiving platform having a linear interferometer antenna array. It addresses the estimation accuracy of interferometer phase measurements of a signal with superposed Gaussian noise from multiple antenna baselines, and provides a method for resolving the modulo two-pi problem inherent to many phase measurement systems. The study extends prior theoretical work (Hanna, C., 1983) by laying a mathematical foundation to complement his geometrical approach, provides a robust method of performance prediction for such a system. Key elements include estimation accuracy of a signal parameter with additive noise; the design of the linear antenna array element spacings and the relationship to Diophantine equations; and the application of the Cramer-Rao lower bound on variance of parameter estimation. It is hoped that the work presented here will serve as a practical guide for research scientists and engineers.

  18. Application of an array processor to the analysis of magnetic data for the Doublet III tokamak

    SciTech Connect

    Wang, T.S.; Saito, M.T.

    1980-08-01

    Discussed herein is a fast computational technique employing the Floating Point Systems AP-190L array processor to analyze magnetic data for the Doublet III tokamak, a fusion research device. Interpretation of the experimental data requires the repeated solution of a free-boundary nonlinear partial differential equation, which describes the magnetohydrodynamic (MHD) equilibrium of the plasma. For this particular application, we have found that the array processor is only 1.4 and 3.5 times slower than the CDC-7600 and CRAY computers, respectively. The overhead on the host DEC-10 computer was kept to a minimum by chaining the complete Poisson solver and free-boundary algorithm into one single-load module using the vector function chainer (VFC). A simple time-sharing scheme for using the MHD code is also discussed.

  19. Grating lobes analysis based on blazed grating theory for liquid crystal optical-phased array

    NASA Astrophysics Data System (ADS)

    Chen, Jian; Cui, Guolong; Kong, Lingjiang; Xiao, Feng; Liu, Xin; Zhang, Xiaoguang

    2013-09-01

    The grating lobes of the liquid crystal optical-phased array (LCOPA) based on blazed grating theory is studied. Using the Fraunhofer propagation principle, the analytical expressions of the far-field intensity distribution are derived. Subsequently, we can obtain both the locations and the intensities of the grating lobes. The derived analytical functions that provide an insight into single-slit diffraction and multislit interference effect on the grating lobes are discussed. Utilizing the conventional microwave-phased array technique, the intensities of the grating lobes and the main lobe are almost the same. Different from this, the derived analytical functions demonstrate that the intensities of the grating lobes are less than that of the main lobe. The computer simulations and experiments show that the proposed method can correctly estimate the locations and the intensities of the grating lobes for a LCOPA simultaneously.

  20. Scattering and radiation analysis of three-dimensional cavity arrays via a hybrid finite element method

    NASA Technical Reports Server (NTRS)

    Jin, Jian-Ming; Volakis, John L.

    1992-01-01

    A hybrid numerical technique is presented for a characterization of the scattering and radiation properties of three-dimensional cavity arrays recessed in a ground plane. The technique combines the finite element and boundary integral methods and invokes Floquet's representation to formulate a system of equations for the fields at the apertures and those inside the cavities. The system is solved via the conjugate gradient method in conjunction with the Fast Fourier Transform (FFT) thus achieving an O(N) storage requirement. By virtue of the finite element method, the proposed technique is applicable to periodic arrays comprised of cavities having arbitrary shape and filled with inhomogeneous dielectrics. Several numerical results are presented, along with new measured data, which demonstrate the validity, efficiency, and capability of the technique.

  1. Multiplexed Analysis of Serum Breast and Ovarian Cancer Markers by Means of Suspension Bead-quantum Dot Microarrays

    NASA Astrophysics Data System (ADS)

    Brazhnik, Kristina; Sokolova, Zinaida; Baryshnikova, Maria; Bilan, Regina; Nabiev, Igor; Sukhanova, Alyona

    Multiplexed analysis of cancer markers is crucial for early tumor diagnosis and screening. We have designed lab-on-a-bead microarray for quantitative detection of three breast cancer markers in human serum. Quantum dots were used as bead-bound fluorescent tags for identifying each marker by means of flow cytometry. Antigen-specific beads reliably detected CA 15-3, CEA, and CA 125 in serum samples, providing clear discrimination between the samples with respect to the antigen levels. The novel microarray is advantageous over the routine single-analyte ones due to the simultaneous detection of various markers. Therefore the developed microarray is a promising tool for serum tumor marker profiling.

  2. Design, microfabrication, and analysis of micrometer-sized cylindrical ion trap arrays

    NASA Astrophysics Data System (ADS)

    Cruz, D.; Chang, J. P.; Fico, M.; Guymon, A. J.; Austin, D. E.; Blain, M. G.

    2007-01-01

    A description of the design and microfabrication of arrays of micrometer-scale cylindrical ion traps is offered. Electrical characterization and initial ion trapping experiments with a massively parallel array of 5μm internal radius (r0) sized cylindrical ion traps (CITs) are also described. The ion trap, materials, and design are presented and shown to be critical in achieving minimal trapping potential while maintaining minimal power consumption. The ion traps, fabricated with metal electrodes, have inner radii of 1, 2, 5, and 10μm and range from 5to24μm in height. The electrical characteristics of packaged ion trap arrays were measured with a vector network analyzer. The testing focused on trapping toluene (C7H8), mass 91, 92, or 93amu, in the 5μm sized CITs. Ions were formed via electron impact ionization and were ejected by turning off the rf voltage applied to the ring electrode; a current signal was collected at this time. Optimum ionization and trapping conditions, such as a sufficient pseudopotential well and high ionization to ion loss rate ratio (as determined by simulation), proved to be difficult to establish due to the high device capacitance and the presence of exposed dielectric material in the trapping region. However, evidence was obtained suggesting the trapping of ions in 1%-15% of the traps in the array. These first tests on micrometer-scale CITs indicated the necessary materials and device design modifications for realizing ultrasmall and low power ion traps.

  3. Design, microfabrication, and analysis of micrometer-sized cylindrical ion trap arrays

    SciTech Connect

    Cruz, D.; Chang, J. P.; Fico, M.; Guymon, A. J.; Austin, D. E.; Blain, M. G.

    2007-01-15

    A description of the design and microfabrication of arrays of micrometer-scale cylindrical ion traps is offered. Electrical characterization and initial ion trapping experiments with a massively parallel array of 5 {mu}m internal radius (r{sub 0}) sized cylindrical ion traps (CITs) are also described. The ion trap, materials, and design are presented and shown to be critical in achieving minimal trapping potential while maintaining minimal power consumption. The ion traps, fabricated with metal electrodes, have inner radii of 1, 2, 5, and 10 {mu}m and range from 5 to 24 {mu}m in height. The electrical characteristics of packaged ion trap arrays were measured with a vector network analyzer. The testing focused on trapping toluene (C{sub 7}H{sub 8}), mass 91, 92, or 93 amu, in the 5 {mu}m sized CITs. Ions were formed via electron impact ionization and were ejected by turning off the rf voltage applied to the ring electrode; a current signal was collected at this time. Optimum ionization and trapping conditions, such as a sufficient pseudopotential well and high ionization to ion loss rate ratio (as determined by simulation), proved to be difficult to establish due to the high device capacitance and the presence of exposed dielectric material in the trapping region. However, evidence was obtained suggesting the trapping of ions in 1%-15% of the traps in the array. These first tests on micrometer-scale CITs indicated the necessary materials and device design modifications for realizing ultrasmall and low power ion traps.

  4. Articulated Suspension Without Springs

    NASA Technical Reports Server (NTRS)

    Bickler, Donald B.

    1990-01-01

    Wheels negotiate bumps and holes with minimal tilting of vehicle body. In new suspension, wheel climbs obstacle as high as 1 1/2 times its diameter without excessive tilting of chassis. Provides highly stable ride over rough ground for such vehicles as wheelchairs, military scout cars, and police and fire robots. System of levers distributes weight to wheels. Sized to distribute equal or other desired portions of load among wheels.

  5. Theoretical and experimental comparative analysis of beamforming methods for loudspeaker arrays under given performance constraints

    NASA Astrophysics Data System (ADS)

    Olivieri, Ferdinando; Fazi, Filippo Maria; Nelson, Philip A.; Shin, Mincheol; Fontana, Simone; Yue, Lang

    2016-07-01

    Methods for beamforming are available that provide the signals used to drive an array of sources for the implementation of systems for the so-called personal audio. In this work, performance of the delay-and-sum (DAS) method and of three widely used methods for optimal beamforming are compared by means of computer simulations and experiments in an anechoic environment using a linear array of sources with given constraints on quality of the reproduced field at the listener's position and limit to input energy to the array. Using the DAS method as a benchmark for performance, the frequency domain responses of the loudspeaker filters can be characterized in three regions. In the first region, at low frequencies, input signals designed with the optimal methods are identical and provide higher directivity performance than that of the DAS. In the second region, performance of the optimal methods are similar to the DAS method. The third region starts above the limit due to spatial aliasing. A method is presented to estimate the boundaries of these regions.

  6. Simulation Analysis on Photoelectric Conversion Characteristics of Silicon Nanowire Array Photoelectrodes.

    PubMed

    Zhao, Yong; Yu, Jin; Fang, Li-Guang; Zheng, Jun; Wang, Hui-Qin; Yuan, Ji-Ren; Wu, Shaolong; Cheng, Guo-An

    2015-12-01

    Semiconductor nanowire photoelectrochemical cells have attracted extensive attention in the light-conversion field owing to the low-cost preparation, excellent optical absorption, and short distance of carrier collection. Although there are numbers of experimental investigations to improve the device performance, the understanding of the detailed process of photoelectric conversion needs to be further improved. In this work, a thorough optoelectronic simulation is employed to figure out how the nanowire diameter, doping concentration, and illumination wavelength affect the photoelectric conversion characteristics of the silicon nanowire array photoelectrodes. We find that two balances should be carefully weighted between optical absorption and photogenerated-carrier collection, along with between short-circuit photocurrent density and open-circuit voltage. For the small-diameter nanowire array photoelectrodes, the overall absorption is higher than that of the larger-diameter ones with the most contribution from the nanowires. However, the substrate shows increasing absorption with increasing illumination wavelength. Higher doping density leads to a larger open-circuit voltage; while lower doping density can guarantee a relatively higher short-circuit photocurrent. To obtain high-light-conversion-efficiency photoelectrodes, the doping density should be carefully chosen with considerations of illumination wavelength and surface recombination. Suppressing the surface recombination velocity can effectively enhance the short-circuit photocurrent (open-circuit voltage) for the lightly (heavily) doped nanowire array photoelectrodes. Our systematical results provide a theoretical guidance for the photoelectrochemical devices based on semiconductor nanostructures.

  7. Simulation Analysis on Photoelectric Conversion Characteristics of Silicon Nanowire Array Photoelectrodes

    NASA Astrophysics Data System (ADS)

    Zhao, Yong; Yu, Jin; Fang, Li-Guang; Zheng, Jun; Wang, Hui-Qin; Yuan, Ji-Ren; Wu, Shaolong; Cheng, Guo-An

    2015-06-01

    Semiconductor nanowire photoelectrochemical cells have attracted extensive attention in the light-conversion field owing to the low-cost preparation, excellent optical absorption, and short distance of carrier collection. Although there are numbers of experimental investigations to improve the device performance, the understanding of the detailed process of photoelectric conversion needs to be further improved. In this work, a thorough optoelectronic simulation is employed to figure out how the nanowire diameter, doping concentration, and illumination wavelength affect the photoelectric conversion characteristics of the silicon nanowire array photoelectrodes. We find that two balances should be carefully weighted between optical absorption and photogenerated-carrier collection, along with between short-circuit photocurrent density and open-circuit voltage. For the small-diameter nanowire array photoelectrodes, the overall absorption is higher than that of the larger-diameter ones with the most contribution from the nanowires. However, the substrate shows increasing absorption with increasing illumination wavelength. Higher doping density leads to a larger open-circuit voltage; while lower doping density can guarantee a relatively higher short-circuit photocurrent. To obtain high-light-conversion-efficiency photoelectrodes, the doping density should be carefully chosen with considerations of illumination wavelength and surface recombination. Suppressing the surface recombination velocity can effectively enhance the short-circuit photocurrent (open-circuit voltage) for the lightly (heavily) doped nanowire array photoelectrodes. Our systematical results provide a theoretical guidance for the photoelectrochemical devices based on semiconductor nanostructures.

  8. Nanohole Array-Directed Trapping of Mammalian Mitochondria Enabling Single Organelle Analysis.

    PubMed

    Kumar, Shailabh; Wolken, Gregory G; Wittenberg, Nathan J; Arriaga, Edgar A; Oh, Sang-Hyun

    2015-12-15

    We present periodic nanohole arrays fabricated in free-standing metal-coated nitride films as a platform for trapping and analyzing single organelles. When a microliter-scale droplet containing mitochondria is dispensed above the nanohole array, the combination of evaporation and capillary flow directs individual mitochondria to the nanoholes. Mammalian mitochondria arrays were rapidly formed on chip using this technique without any surface modification steps, microfluidic interconnects, or external power sources. The trapped mitochondria were depolarized on chip using an ionophore with results showing that the organelle viability and behavior were preserved during the on-chip assembly process. Fluorescence signal related to mitochondrial membrane potential was obtained from single mitochondria trapped in individual nanoholes revealing statistical differences between the behavior of polarized vs depolarized mammalian mitochondria. This technique provides a fast and stable route for droplet-based directed localization of organelles-on-a-chip with minimal limitations and complexity, as well as promotes integration with other optical or electrochemical detection techniques. PMID:26593329

  9. Performance bounds for passive sensor arrays operating in a turbulent medium: plane-wave analysis.

    PubMed

    Collier, S L; Wilson, D K

    2003-05-01

    The performance bounds of a passive acoustic array operating in a turbulent medium with fluctuations described by a von Kármán spectrum are investigated. This treatment considers a single, monochromatic, plane-wave source at near-normal incidence. A line-of-sight propagation path is assumed. The primary interests are in calculating the Cramer-Rao lower bounds of the azimuthal and elevational angles of arrival and in observing how these bounds change with the introduction of additional unknowns, such as the propagation distance, turbulence parameters, and signal-to-noise ratio. In both two and three dimensions, it is found that for large values of the index-of-refraction variance, the Cramer-Rao lower bounds of the angles of arrival increase significantly at large values of the normalized propagation distance. For small values of the index-of-refraction variance and normalized propagation distance, the signal-to-noise ratio is found to be the limiting factor. In the two-dimensional treatment, it is found that the estimate of the angle of arrival will decouple from the estimates of the other parameters with the appropriate choice of array geometry. In three dimensions, again with an appropriate choice of array geometry, the estimates of the azimuth and elevation will decouple from the estimates of the other parameters, but due to the constraints of the model, will remain coupled to one another.

  10. Simulation Analysis on Photoelectric Conversion Characteristics of Silicon Nanowire Array Photoelectrodes.

    PubMed

    Zhao, Yong; Yu, Jin; Fang, Li-Guang; Zheng, Jun; Wang, Hui-Qin; Yuan, Ji-Ren; Wu, Shaolong; Cheng, Guo-An

    2015-12-01

    Semiconductor nanowire photoelectrochemical cells have attracted extensive attention in the light-conversion field owing to the low-cost preparation, excellent optical absorption, and short distance of carrier collection. Although there are numbers of experimental investigations to improve the device performance, the understanding of the detailed process of photoelectric conversion needs to be further improved. In this work, a thorough optoelectronic simulation is employed to figure out how the nanowire diameter, doping concentration, and illumination wavelength affect the photoelectric conversion characteristics of the silicon nanowire array photoelectrodes. We find that two balances should be carefully weighted between optical absorption and photogenerated-carrier collection, along with between short-circuit photocurrent density and open-circuit voltage. For the small-diameter nanowire array photoelectrodes, the overall absorption is higher than that of the larger-diameter ones with the most contribution from the nanowires. However, the substrate shows increasing absorption with increasing illumination wavelength. Higher doping density leads to a larger open-circuit voltage; while lower doping density can guarantee a relatively higher short-circuit photocurrent. To obtain high-light-conversion-efficiency photoelectrodes, the doping density should be carefully chosen with considerations of illumination wavelength and surface recombination. Suppressing the surface recombination velocity can effectively enhance the short-circuit photocurrent (open-circuit voltage) for the lightly (heavily) doped nanowire array photoelectrodes. Our systematical results provide a theoretical guidance for the photoelectrochemical devices based on semiconductor nanostructures. PMID:26123274

  11. Performance bounds for passive sensor arrays operating in a turbulent medium: Plane-wave analysis

    NASA Astrophysics Data System (ADS)

    Collier, S. L.; Wilson, D. K.

    2003-05-01

    The performance bounds of a passive acoustic array operating in a turbulent medium with fluctuations described by a von Kármán spectrum are investigated. This treatment considers a single, monochromatic, plane-wave source at near-normal incidence. A line-of-sight propagation path is assumed. The primary interests are in calculating the Cramer-Rao lower bounds of the azimuthal and elevational angles of arrival and in observing how these bounds change with the introduction of additional unknowns, such as the propagation distance, turbulence parameters, and signal-to-noise ratio. In both two and three dimensions, it is found that for large values of the index-of-refraction variance, the Cramer-Rao lower bounds of the angles of arrival increase significantly at large values of the normalized propagation distance. For small values of the index-of-refraction variance and normalized propagation distance, the signal-to-noise ratio is found to be the limiting factor. In the two-dimensional treatment, it is found that the estimate of the angle of arrival will decouple from the estimates of the other parameters with the appropriate choice of array geometry. In three dimensions, again with an appropriate choice of array geometry, the estimates of the azimuth and elevation will decouple from the estimates of the other parameters, but due to the constraints of the model, will remain coupled to one another.

  12. Analysis of L-cone/M-cone visual pigment gene arrays in females by long-range PCR.

    PubMed

    Oda, Sanae; Ueyama, Hisao; Nishida, Yasuhiro; Tanabe, Shoko; Yamade, Shinichi

    2003-03-01

    The L-cone/M-cone visual pigment gene arrays were analyzed in a group of 63 Japanese females consisting of 7 applicants for examination of their carrier status, 14 color-deficient females, 6 obligate carriers with no genotypic data available for affected father or sons, and 36 color-normals. The first and the downstream genes, the entire region from the promoter to exon 6, were each amplified very efficiently by the long-range PCR to give products of 15.8 and 14.4 kb, respectively. The products were gel-purified and used as the template in the second PCR for exon 5. The region from intron 4 of the last genes, to the nearest neighbor gene, TEX28, was also efficiently amplified by the long-range PCR and the gel-purified products (27.5 kb) were used as the template in the second PCR for exon 5. The status of the 7 applicants was thought to be 3 non-carriers, 2 protan carriers and 2 deutan carriers. All of the 14 color-deficient females had unusual arrays in which an M gene was present as the first gene, an L gene(s) was present downstream, or a single L gene constituted both of the two arrays. One protanopic subject, A348, had an L gene as one of the first genes. The 6 obligate carriers also had unusual arrays with the exception of the mother of the A187, a male subject with pigment color defect. In the 36 color-normal individuals, 4 had downstream L genes. The long-range PCR method is useful for analysis of the L/M visual pigment genes. PMID:12594995

  13. Stress in dilute suspensions

    NASA Technical Reports Server (NTRS)

    Passman, Stephen L.

    1989-01-01

    Generally, two types of theory are used to describe the field equations for suspensions. The so-called postulated equations are based on the kinetic theory of mixtures, which logically should give reasonable equations for solutions. The basis for the use of such theory for suspensions is tenuous, though it at least gives a logical path for mathematical arguments. It has the disadvantage that it leads to a system of equations which is underdetermined, in a sense that can be made precise. On the other hand, the so-called averaging theory starts with a determined system, but the very process of averaging renders the resulting system underdetermined. A third type of theory is proposed in which the kinetic theory of gases is used to motivate continuum equations for the suspended particles. This entails an interpretation of the stress in the particles that is different from the usual one. Classical theory is used to describe the motion of the suspending medium. The result is a determined system for a dilute suspension. Extension of the theory to more concentrated systems is discussed.

  14. The Tail Suspension Test

    PubMed Central

    Terrillion, Chantelle E.; Piantadosi, Sean C.; Bhat, Shambhu; Gould, Todd D.

    2012-01-01

    The tail-suspension test is a mouse behavioral test useful in the screening of potential antidepressant drugs, and assessing of other manipulations that are expected to affect depression related behaviors. Mice are suspended by their tails with tape, in such a position that it cannot escape or hold on to nearby surfaces. During this test, typically six minutes in duration, the resulting escape oriented behaviors are quantified. The tail-suspension test is a valuable tool in drug discovery for high-throughput screening of prospective antidepressant compounds. Here, we describe the details required for implementation of this test with additional emphasis on potential problems that may occur and how to avoid them. We also offer a solution to the tail climbing behavior, a common problem that renders this test useless in some mouse strains, such as the widely used C57BL/6. Specifically, we prevent tail climbing behaviors by passing mouse tails through a small plastic cylinder prior to suspension. Finally, we detail how to manually score the behaviors that are manifested in this test. PMID:22315011

  15. The subtle suspension of backlash: A meta-analysis of penalties for women's implicit and explicit dominance behavior.

    PubMed

    Williams, Melissa J; Tiedens, Larissa Z

    2016-02-01

    Previous research suggests that women, more than men, experience negative outcomes when they display dominance. A closer look, however, reveals ambiguity about the specific forms of dominance proscribed for women. Here, we suggest that negative reactions to women's dominance, a counter-stereotypical behavior, may require that the behavior be clearly encoded as counter-stereotypical-which is less likely when the behavior is expressed implicitly. This hypothesis was tested with a meta-analysis of studies on the evaluation of individuals behaving dominantly, including articles not directly investigating gender. Results revealed that dominance indeed hurts women's, relative to men's, likability (although the overall effect is small, d = -0.19, k = 63), as well as more downstream outcomes such as hireability (d = -0.58, k = 20). More important, however, dominance expressed explicitly (e.g., direct demands) affected women's likability (d = -0.28) whereas implicit forms of dominance (e.g., eye contact) did not (d = 0.03). Finally, the effect of dominance on men's and women's perceived competence did not differ (d = 0.02, k = 31), consistent with the idea that it is interpersonal (rather than instrumental) evaluations that obstruct women leaders. Implications for theory, and for the success of male and female leaders, are discussed. PMID:26689089

  16. Unified field analysis method for IR/MW micro-mirror array beam combiner.

    PubMed

    Tian, Yi; Sun, Gang; Yan, Hui; Zhang, Li; Li, Zhuo

    2014-07-01

    The aperture field integration method (AFIM) is proposed and utilized to efficiently compute the field distributions of infrared/microwave (IR/MW) micro-mirror array beam combiners, including the MW near-field distribution and the IR far-field distribution. The MW near-field distributions of single-dielectric-layer beam combiners with 1, 11, and 101 micromirrors are analyzed by AFIM. Compared to the commonly used multilevel fast multipole method (MLFMM) in the computation of MW near-field distribution, the memory requirement and CPU time consumption are reduced drastically from 16.92 GB and 3.26 h to 0.66 MB and 0.55 s, respectively. The calculation accuracy is better than 96%, when the MW near-field distribution is computed. The IR far-field computational capability is validated by comparing the results obtained through AFIM and experiment. The MW near field and IR far field of a circular and a square shape of three-layer micro-mirror array beam combiners are also analyzed. Four indicators E pv , E rms , φ pv , and φ rms representing the amplitude and phase variations are proposed to evaluate the MW near-field uniformity. The simulation results show that the increase of beam combiner size can improve the uniformity of the MW near field, and that the square shape has less influence on the uniformity of the MW near field than the circular one. The zeroth-order diffraction primary maximum intensity of the IR far field is decreased by 1/cos 2  α 0 times compared to that of the equivalent mirror, where α 0 is the oblique angle of each micromirror. When the periodic length of the micro-mirror array is less than 0.1 mm, the position of the secondary maximum will exceed the size of the focal plane array. Simultaneously, the half-width of the zeroth-order diffraction primary maximum is less than the size of a single pixel. Thus, IR images with high quality will be obtained. The simulation results show that the AFIM as a unified method can be applied to design

  17. From random sphere packings to regular pillar arrays: analysis of transverse dispersion.

    PubMed

    Daneyko, Anton; Hlushkou, Dzmitry; Khirevich, Siarhei; Tallarek, Ulrich

    2012-09-28

    We study the impact of microscopic order on transverse dispersion in the interstitial void space of bulk (unconfined) chromatographic beds by numerical simulations of incompressible fluid flow and mass transport of a passive tracer. Our study includes polydisperse random sphere packings (computer-generated with particle size distributions of modern core-shell and sub-2 μm particles), the macropore space morphology of a physically reconstructed silica monolith, and computer-generated regular pillar arrays. These bed morphologies are analyzed by their velocity probability density distributions, transient dispersion behavior, and the dependence of asymptotic transverse dispersion coefficients on the mobile phase velocity. In our work, the spherical particles, the monolith skeleton, and the cylindrical pillars are all treated as impermeable solid phase (nonporous) and the tracer is unretained, to focus on the impact of microscopic order on flow and (particularly transverse) hydrodynamic dispersion in the interstitial void space. The microscopic order of the pillar arrays causes their velocity probability density distributions to start and end abruptly, their transient dispersion coefficients to oscillate, and the asymptotic transverse dispersion coefficients to plateau out of initial power law behavior. The microscopically disordered beds, by contrast, follow power law behavior over the whole investigated velocity range, for which we present refined equations (i.e., Eq.(13) and the data in Table 2 for the polydisperse sphere packings; Eq.(17) for the silica monolith). The bulk bed morphologies and their intrinsic differences addressed in this work determine how efficient a bed can relax the transverse concentration gradients caused by wall effects, which exist in all confined separation media used in chromatographic practice. Whereas the effect of diffusion on transverse dispersion decreases and ultimately disappears at increasing velocity with the microscopically

  18. Effect of osmotic pressure to bioimpedance indexes of erythrocyte suspensions

    NASA Astrophysics Data System (ADS)

    Melnikov, A. A.; Nikolaev, D. V.; Malahov, M. V.; Smirnov, A. V.

    2012-12-01

    In the paper we studied effects of osmotic modification of red blood cells on bioimpedance parameters of erythrocyte suspension. The Cole parameters: the extracellular (Re) and intracellular (Ri) fluid resistance, the Alpha parameter, the characteristic frequency (Fchar) and the cell membranes capacitance (Cm) of concentrated erythrocyte suspensions were measured by bioimpedance analyser in the frequency range 5 - 500 kHz. Erythrocytes were incubated in hypo-, hyper- and isoosmotic solutions to achieve changes in cell volume. It was found that Re and Alpha increased in the suspensions with low osmolarity and decreased in the hypertonic suspensions. Ri, Fchar and Cm were higher in the hyperosmotic and were lower in the hypoosmotic suspensions. Correlations of all BIS parameters with MCV were obtained, but multiple regression analysis showed that only Alpha parameter was independently related to MCV (β=0.77, p=0.01). Thus Alpha parameter may be related the mean corpuscular volume of cells.

  19. Active suspension for a two-axle railway vehicle

    NASA Astrophysics Data System (ADS)

    Pacchioni, Alessandro; Goodall, Roger M.; Bruni, Stefano

    2010-12-01

    The aim of this paper is to investigate how the ride quality of a two-axle railway vehicle with single-stage suspension might be improved by the use of active control, compensating for the lack of the double suspension stage, and thereby taking full advantage of vehicle lightweight construction. The basic requirement is to improve the ride quality on random track unevenness while keeping suspension deflection within acceptable levels when the vehicle negotiates deterministic track features such as a gradient. Two active suspension configurations are considered - skyhook damping and linear quadratic Gaussian (LQG) optimal control. Finally, actuator dynamics are included in the analysis, to assess the impact on the overall success of an active suspension implementation. The paper shows that both skyhook and LQG control strategies offer significant improvements in ride quality and also that careful design of the actuators and their force control loops is essential.

  20. Static and Dynamic Analysis of Stretched Membrane Lenses for Lightweight Space Solar Arrays

    NASA Astrophysics Data System (ADS)

    Mockensturm, Eric M.

    2002-12-01

    NASA and ENTECH, Inc. have been developing space photovoltaic arrays using refractive concentrator technology since 1986. These refractive concentrators use Fresnel lenses in a unique arch shape to minimize the effects of shape errors. In 1994, silicone Fresnel lenses where used in the SCARLET(Registered Trademark) solar array developed by ENTECH and AEC-ABLE. In this array the 200-micron-thick lenses were laminated to 75-micron-thick, thermally shaped, ceria-doped glass arches. These glass arches forced the flexible lenses into the optimal arch shape. The arrays constructed using these lenses achieved over 200 W/sq m areal power and 45 W/kg specific power and are currently powering both the spacecraft and the ion engine on the NASA/JPL Deep Space One probe. To further reduce weight and increase areal and specific power, the next generation of solar concentrator arrays will eliminate the glass arch and lens frame. The flexible lenses will be stretched as membranes between optimally shaped, supporting end arches. This patented stretched lens array will also use redesigned composite radiator sheets to reduce the weight of the SCARLET panels by a factor of four. In addition, by eliminating optical losses caused by the glass arches and lens frames, the SLA performance is higher than SCARLET. The SLA is the first solar array panel of any kind to simultaneously achieve over 300 W/sq m areal power and 300 W/kg specific power. While the optical properties of the stretched lenses are excellent, they must be analyzed structurally to ensure that they perform at their optimal levels. Lens parameters such as backing thickness, lens tension, and effective length can be altered to change the structural response of the lens without affecting the optical performance. In particular, the lenses must be designed to maintain the arch shape specified by the end support along the entire length. Because the lenses are flat in their natural state, they resist being bent into the desired

  1. Angular acceptance analysis of an infrared focal plane array with a built-in stationary Fourier transform spectrometer.

    PubMed

    Gillard, Frédéric; Ferrec, Yann; Guérineau, Nicolas; Rommeluère, Sylvain; Taboury, Jean; Chavel, Pierre

    2012-06-01

    Stationary Fourier transform spectrometry is an interesting concept for building reliable field or embedded spectroradiometers, especially for the mid- and far- IR. Here, a very compact configuration of a cryogenic stationary Fourier transform IR (FTIR) spectrometer is investigated, where the interferometer is directly integrated in the focal plane array (FPA). We present a theoretical analysis to explain and describe the fringe formation inside the FTIR-FPA structure when illuminated by an extended source positioned at a finite distance from the detection plane. The results are then exploited to propose a simple front lens design compatible with a handheld package.

  2. Array-based analysis of secreted glycoproteins for rapid selection of a single cell producing a glycoprotein with desired glycosylation.

    PubMed

    Park, Sunyoung; Kim, Wanjung; Kim, Yongtae; Son, Young Dok; Lee, Sang-Chul; Kim, Eunkyung; Kim, Sung Ho; Kim, Jung Hoe; Kim, Hak-Sung

    2010-07-01

    The therapeutic efficacy and in vivo biological function of a glycoprotein is significantly affected by its glycosylation profile. For the development of glycoproteins with therapeutic applications, selection of cell lines producing a glycoprotein with adequate glycoform is crucial. Here, we demonstrate an array-based analysis of secreted glycoproteins for rapid and efficient selection of a single cell producing a glycoprotein with desirable glycosylation. Our approach relies on microengraving and interrogation of glycoproteins produced by individual cells in a microwell array in terms of glycosylation profile as well as the produced amount. On the basis of statistical analysis of the interrogation, single cells which are predicted to produce a desired glycoprotein are selected, retrieved, and expanded. We applied the approach to human recombinant erythropoietin (rhEPO)-producing CHO cells and verified the selection of a single CHO cell that produces rhEPO with a high sialylation degree. Human erythropoietin (hEPO) bearing highly sialylated oligosaccharide was shown to display a much longer plasma half-life, resulting in high therapeutic efficacy. This method may find widespread use in the clonal selection for the production of other glycoproteins with specific glycosylation as well as analysis of the heterogeneity in cell populations in a high-throughput manner.

  3. Towards a cellular multi-parameter analysis platform: fluorescence in situ hybridization (FISH) on microhole-array chips.

    PubMed

    Kurz, Christian M; Moosdijk, Stefan V D; Thielecke, Hagen; Velten, Thomas

    2011-01-01

    Highly-sensitive analysis systems based on cellular multi-parameter are needed in the diagnostics. Therefore we improved our previously developed chip platform for another additional analysis method, the fluorescence in situ hybridization. Fluorescence in situ hybridization (FISH) is a technique used in the diagnostics to determine the localization and the presence or absence of specific DNA sequence. To improve this labor- and cost-intensive method, we reduced the assay consumption by a factor of 5 compared to the standard protocol. Microhole chips were used for making the cells well addressable. The chips were fabricated by semiconductor technology on the basis of a Silicon wafer with a thin deposited silicon nitride layer (Si(3)N(4)). Human retina pigment epithelia (ARPE-19) cells were arrayed on 5-μm holes of a 35 × 35 microhole-array by a gently negative differential pressure of around 5 mbar. After 3 hours of incubation the cells were attached to the chip and the FISH protocol was applied to the positioned cells. A LabView software was developed to simplify the analysis. The software automatically counts the number of dots (positive labeled chromosome regions) as well as the distance between adjacent dots. Our developed platform reduces the assay consumption and the labor time. Furthermore, during the 3 hours of incubation non-invasive or minimal-invasive methods like Raman- and impedance-spectroscopy can be applied. PMID:22256298

  4. A Digital Control Algorithm for Magnetic Suspension Systems

    NASA Technical Reports Server (NTRS)

    Britton, Thomas C.

    1996-01-01

    An ongoing program exists to investigate and develop magnetic suspension technologies and modelling techniques at NASA Langley Research Center. Presently, there is a laboratory-scale large air-gap suspension system capable of five degree-of-freedom (DOF) control that is operational and a six DOF system that is under development. Those systems levitate a cylindrical element containing a permanent magnet core above a planar array of electromagnets, which are used for levitation and control purposes. In order to evaluate various control approaches with those systems, the Generic Real-Time State-Space Controller (GRTSSC) software package was developed. That control software package allows the user to implement multiple control methods and allows for varied input/output commands. The development of the control algorithm is presented. The desired functionality of the software is discussed, including the ability to inject noise on sensor inputs and/or actuator outputs. Various limitations, common issues, and trade-offs are discussed including data format precision; the drawbacks of using either Direct Memory Access (DMA), interrupts, or program control techniques for data acquisition; and platform dependent concerns related to the portability of the software, such as memory addressing formats. Efforts to minimize overall controller loop-rate and a comparison of achievable controller sample rates are discussed. The implementation of a modular code structure is presented. The format for the controller input data file and the noise information file is presented. Controller input vector information is available for post-processing by mathematical analysis software such as MATLAB1.

  5. Methods for Room Acoustic Analysis and Synthesis using a Monopole-Dipole Microphone Array

    NASA Technical Reports Server (NTRS)

    Abel, J. S.; Begault, Durand R.; Null, Cynthia H. (Technical Monitor)

    1998-01-01

    In recent work, a microphone array consisting of an omnidirectional microphone and colocated dipole microphones having orthogonally aligned dipole axes was used to examine the directional nature of a room impulse response. The arrival of significant reflections was indicated by peaks in the power of the omnidirectional microphone response; reflection direction of arrival was revealed by comparing zero-lag crosscorrelations between the omnidirectional response and the dipole responses to the omnidirectional response power to estimate arrival direction cosines with respect to the dipole axes.

  6. Analysis of the x-ray refraction using an array-structured detector

    SciTech Connect

    Coan, Paola; Bravin, Alberto

    2007-04-30

    A crystal-less method for analyzing the phase shifts of an x-ray beam passed through a sample is here presented. An array-structured detector is used both to record and analyze the refracted and scattered radiation. Experimental studies of simple phase objects confirmed that images show features similar or equivalent to the ones produced using an analyzer crystal with comparable signal-to-noise ratio values. Using a detector for analyzing the refraction presents evident advantages in terms of optical stability. In addition, with a single acquisition, several refraction angles can be simultaneously analyzed permitting a better exploitation of the dose delivered to the sample.

  7. Analysis and design of box-like filters based on 3×2 microring resonator arrays

    NASA Astrophysics Data System (ADS)

    Zhang, Xiaobei; Zhang, Xinliang; Huang, Dexiu

    2009-11-01

    This paper theoretically investigates spectral characteristics of the 3×2 microring resonator array, with its analytical model developed firstly. Simulation results show that the case of the ring-bus coupling coefficient smaller than the ringring coupling coefficient is suitable for box-like filters. After design principles are given, the optimization process are carried out by evaluating the side lobe rejection ratio, the passband ripple rejection ratio and the roll-off coefficient of the passband edge. The FWHM of the designed box-like filter can be adjustable in a flexible range.

  8. Novel oral suspensions: a review.

    PubMed

    Kathpalia, Harsha; Phadke, Chetan

    2014-01-01

    An oral pharmaceutical suspension has been one of the most favorable dosage forms for pediatric and geriatric patients or patients unable to tolerate solid dosage forms. The liquid form is preferred because of the ease of swallowing and flexibility in the administration of doses. This emerging area of suspensions as applied to the pharmaceutical field are discussed in the current article enlightening the vision of the readers towards pharmaceutical formulations including nanosuspensions, non-aqueous suspensions and modified release suspensions. The emphasis in the article focuses on the essential principles involved in the process of formation of different types of suspensions and their applications, since novel oral suspensions have potential to provide various strategy systems.

  9. Performance analysis of high frequency single-site-location antenna arrays using numerical electromagnetic modeling

    NASA Astrophysics Data System (ADS)

    Schiantarelli, Harry T.

    1990-09-01

    Electronic support measures (ESM) systems play an increasingly important role in modern warfare and can influence the outcome of a military engagement. The application of ESM can be extended to anti-guerrilla and anti-drug operations where law enforcement agencies can exploit the fact that their presence is inducing the outlaw to depend more on radio communications to coordinate their activities. When a propagation path of no more than one reflection at the ionosphere (1-hop) can be assumed, position of an HF emitter can be determined by a single observing site using vertical triangulation, provided that the height of the ionosphere at the point where the radio wave is reflected, can be determined. This technique is known as high frequency direction finding single-site-location (HFDF SSL). This thesis analyzes the HFDF SSL error in measuring the direction of arrival of the signal, how this error is generated by the antenna array and its effect on emitter location. The characteristics of the two antenna arrays used by a specific HFDF SSL system that implements the phase-interferometer techniques were studied using electromagnetic modeling.

  10. Design and analysis of a novel virtual gyroscope with multi-gyroscope and accelerometer array.

    PubMed

    Luo, Zhang; Liu, Chaojun; Yu, Shuai; Zhang, Shengzhi; Liu, Sheng

    2016-08-01

    A new virtual gyroscope with multi-gyroscope and accelerometer array (MGAA) is proposed in this article for improving the performance of angular rate measurement. Outputs of the virtual gyroscope are obtained by merging the signals from gyroscopes and accelerometers through a novel Kalman filter, which intentionally takes the consideration of the MEMS gyroscope error model and kinematics theory of rigid body. A typical configuration of the virtual gyroscope, consisting of four accelerometers and three gyroscopes mounted on designated positions, is initiated to verify the feasibility of the virtual gyroscope with MGAA. Static test and dynamic test are performed subsequently to evaluate its performance. The angular random walk (ARW) and bias instability, two static performance parameters of gyroscope, are reduced from 0.019°/√s and 14.4°/h to 0.0074°/√s and 8.7°/h, respectively. The average root mean square error (RMSE) is reduced from 0.274°/s to 0.133°/s under dynamic test. Compared with the published multi-gyroscope array method, the virtual gyroscope proposed here has a better performance both in static and dynamic tests, with improvement factors of ARW and RMSE about 44.1% and 44.5% higher, respectively.

  11. Array comparative genomic hybridization analysis of small supernumerary marker chromosomes in human infertility.

    PubMed

    Guediche, N; Tosca, L; Kara Terki, A; Bas, C; Lecerf, L; Young, J; Briand-Suleau, A; Tou, B; Bouligand, J; Brisset, S; Misrahi, M; Guiochon-Mantel, A; Goossens, M; Tachdjian, G

    2012-01-01

    Small supernumerary marker chromosomes (sSMC) are structurally abnormal chromosomes that cannot be unambiguously identified by conventional banding cytogenetics. This study describes four patients with sSMC in relation with infertility. Patient 1 had primary infertility. His brother, fertile, carried the same sSMC (patient 2). Patient 3 presented polycystic ovary syndrome and patient 4 primary ovarian insufficiency. Cytogenetic studies, array comparative genomic hybridization (CGH) and sperm analyses were compared with cases previously reported. sSMC corresponded to the 15q11.2 region (patients 1 and 2), the centromeric chromosome 15 region (patient 3) and the 21p11.2 region (patient 4). Array CGH showed 3.6-Mb gain for patients 1 and 2 and 0.266-Mb gain for patient 4. Sperm fluorescent in-situ hybridization analyses found ratios of 0.37 and 0.30 of sperm nuclei with sSMC(15) for patients 1 and 2, respectively (P < 0.001). An increase of sperm nuclei with disomy X, Y and 18 was noted for patient 1 compared with control and patient 2 (P < 0.001). Among the genes mapped in the unbalanced chromosomal regions, POTE B and BAGE are related to the testis and ovary, respectively. The implication of sSMC in infertility could be due to duplication, but also to mechanical effects perturbing meiosis.

  12. Design and analysis of a novel virtual gyroscope with multi-gyroscope and accelerometer array.

    PubMed

    Luo, Zhang; Liu, Chaojun; Yu, Shuai; Zhang, Shengzhi; Liu, Sheng

    2016-08-01

    A new virtual gyroscope with multi-gyroscope and accelerometer array (MGAA) is proposed in this article for improving the performance of angular rate measurement. Outputs of the virtual gyroscope are obtained by merging the signals from gyroscopes and accelerometers through a novel Kalman filter, which intentionally takes the consideration of the MEMS gyroscope error model and kinematics theory of rigid body. A typical configuration of the virtual gyroscope, consisting of four accelerometers and three gyroscopes mounted on designated positions, is initiated to verify the feasibility of the virtual gyroscope with MGAA. Static test and dynamic test are performed subsequently to evaluate its performance. The angular random walk (ARW) and bias instability, two static performance parameters of gyroscope, are reduced from 0.019°/√s and 14.4°/h to 0.0074°/√s and 8.7°/h, respectively. The average root mean square error (RMSE) is reduced from 0.274°/s to 0.133°/s under dynamic test. Compared with the published multi-gyroscope array method, the virtual gyroscope proposed here has a better performance both in static and dynamic tests, with improvement factors of ARW and RMSE about 44.1% and 44.5% higher, respectively. PMID:27587149

  13. Closed-crack imaging and scattering behavior analysis using confocal subharmonic phased array

    NASA Astrophysics Data System (ADS)

    Sugawara, Azusa; Jinno, Kentaro; Ohara, Yoshikazu; Yamanaka, Kazushi

    2015-07-01

    To solve the underestimation of closed-crack depth, we have developed an imaging method, subharmonic phased array for crack evaluation (SPACE). However, a single-array SPACE can image only the vicinity of a transmission focal point (TFP) when the TFP is fixed. In this study, we have developed a confocal SPACE that defines multiple TFPs for imaging closed cracks over a wide area. We demonstrated its usefulness by measuring a stress corrosion crack (SCC). Moreover, we proposed a radarlike display that shows single-focus images with a line indicating the incident direction. By applying it to the SCC specimen, a moving crack response (MCR) was observed with varying incident angles. To analyze this behavior, we performed a simulation using a finite-difference time-domain (FDTD) method with a damped double node (DDN) model. Furthermore, we examined the ratio of the subharmonic to fundamental responses depending on the stress ratio between input wave stress and crack closure stress (σc).

  14. Microdeletion and Microduplication Analysis of Chinese Conotruncal Defects Patients with Targeted Array Comparative Genomic Hybridization

    PubMed Central

    Ma, Xiaojing; Wu, Dandan; Zhang, Ting; He, Li; Qin, Shengying; Li, Xiaotian

    2013-01-01

    Objective The current study aimed to develop a reliable targeted array comparative genomic hybridization (aCGH) to detect microdeletions and microduplications in congenital conotruncal defects (CTDs), especially on 22q11.2 region, and for some other chromosomal aberrations, such as 5p15-5p, 7q11.23 and 4p16.3. Methods Twenty-seven patients with CTDs, including 12 pulmonary atresia (PA), 10 double-outlet right ventricle (DORV), 3 transposition of great arteries (TGA), 1 tetralogy of Fallot (TOF) and one ventricular septal defect (VSD), were enrolled in this study and screened for pathogenic copy number variations (CNVs), using Agilent 8 x 15K targeted aCGH. Real-time quantitative polymerase chain reaction (qPCR) was performed to test the molecular results of targeted aCGH. Results Four of 27 patients (14.8%) had 22q11.2 CNVs, 1 microdeletion and 3 microduplications. qPCR test confirmed the microdeletion and microduplication detected by the targeted aCGH. Conclusion Chromosomal abnormalities were a well-known cause of multiple congenital anomalies (MCA). This aCGH using arrays with high-density coverage in the targeted regions can detect genomic imbalances including 22q11.2 and other 10 kinds CNVs effectively and quickly. This approach has the potential to be applied to detect aneuploidy and common microdeletion/microduplication syndromes on a single microarray. PMID:24098474

  15. Infrared/microwave (IR/MW) micromirror array beam combiner design and analysis.

    PubMed

    Tian, Yi; Lv, Lijun; Jiang, Liwei; Wang, Xin; Li, Yanhong; Yu, Haiming; Feng, Xiaochen; Li, Qi; Zhang, Li; Li, Zhuo

    2013-08-01

    We investigated the design method of an infrared (IR)/microwave (MW) micromirror array type of beam combiner. The size of micromirror is in microscopic levels and comparable to MW wavelengths, so that the MW will not react in these dimensions, whereas the much shorter optical wavelengths will be reflected by them. Hence, the MW multilayered substrate was simplified and designed using transmission line theory. The beam combiner used an IR wavefront-division imaging technique to reflect the IR radiation image to the unit under test (UUT)'s pupil in a parallel light path. In addition, the boresight error detected by phase monopulse radar was analyzed using a moment-of method (MoM) and multilevel fast multipole method (MLFMM) acceleration technique. The boresight error introduced by the finite size of the beam combiner was less than 1°. Finally, in order to verify the wavefront-division imaging technique, a prototype of a micromirror array was fabricated, and IR images were tested. The IR images obtained by the thermal imager verified the correctness of the wavefront-division imaging technique. PMID:23913059

  16. Design and analysis of a novel virtual gyroscope with multi-gyroscope and accelerometer array

    NASA Astrophysics Data System (ADS)

    Luo, Zhang; Liu, Chaojun; Yu, Shuai; Zhang, Shengzhi; Liu, Sheng

    2016-08-01

    A new virtual gyroscope with multi-gyroscope and accelerometer array (MGAA) is proposed in this article for improving the performance of angular rate measurement. Outputs of the virtual gyroscope are obtained by merging the signals from gyroscopes and accelerometers through a novel Kalman filter, which intentionally takes the consideration of the MEMS gyroscope error model and kinematics theory of rigid body. A typical configuration of the virtual gyroscope, consisting of four accelerometers and three gyroscopes mounted on designated positions, is initiated to verify the feasibility of the virtual gyroscope with MGAA. Static test and dynamic test are performed subsequently to evaluate its performance. The angular random walk (ARW) and bias instability, two static performance parameters of gyroscope, are reduced from 0.019°/√s and 14.4°/h to 0.0074°/√s and 8.7°/h, respectively. The average root mean square error (RMSE) is reduced from 0.274°/s to 0.133°/s under dynamic test. Compared with the published multi-gyroscope array method, the virtual gyroscope proposed here has a better performance both in static and dynamic tests, with improvement factors of ARW and RMSE about 44.1% and 44.5% higher, respectively.

  17. Information theory analysis of sensor-array imaging systems for computer vision

    NASA Technical Reports Server (NTRS)

    Huck, F. O.; Fales, C. L.; Park, S. K.; Samms, R. W.; Self, M. O.

    1983-01-01

    Information theory is used to assess the performance of sensor-array imaging systems, with emphasis on the performance obtained with image-plane signal processing. By electronically controlling the spatial response of the imaging system, as suggested by the mechanism of human vision, it is possible to trade-off edge enhancement for sensitivity, increase dynamic range, and reduce data transmission. Computational results show that: signal information density varies little with large variations in the statistical properties of random radiance fields; most information (generally about 85 to 95 percent) is contained in the signal intensity transitions rather than levels; and performance is optimized when the OTF of the imaging system is nearly limited to the sampling passband to minimize aliasing at the cost of blurring, and the SNR is very high to permit the retrieval of small spatial detail from the extensively blurred signal. Shading the lens aperture transmittance to increase depth of field and using a regular hexagonal sensor-array instead of square lattice to decrease sensitivity to edge orientation also improves the signal information density up to about 30 percent at high SNRs.

  18. Impedance spectroscopy analysis of human odorant binding proteins immobilized on nanopore arrays for biochemical detection.

    PubMed

    Lu, Yanli; Zhang, Diming; Zhang, Qian; Huang, Yixuan; Luo, Senbiao; Yao, Yao; Li, Shuang; Liu, Qingjun

    2016-05-15

    Human odorant-binding proteins (hOBPs) not only can bind and transport odorants in the surrounding environment for sensing smells, but also play important roles in transmitting lots of biomolecules in different organs. Utilizing the properties of hOBPs, an electrochemical biosensor with nanopore array was developed to detect specific biomolecular ligands, such as aldehydes and fatty acids. The highly ordered nanopores of anodic aluminum oxide with diameter of 20-40 nm were fabricated with two-step oxidation. Through 2-carboxyethyl phosphonic acid, hOBPs were self-assembled on nanopores as the sensing membrane. With nanopore arrays, the impedance spectra showed quite different electron transfer processes in the frequency spectra, which could be characterized by the electron transfer resistance and electrical resistance of the porous membrane. Under stimulation of biomolecular ligands, series resistance of nanopores and hOBPs increased and showed a concentration-dependence feature, while the electron transfer resistance hardly changed. The nanopore based biosensor could sensitively detect biological ligands of benzaldehyde, docosahexaenoic acid, and lauric acid, which were closely related to or were potential biomarkers for cancers and other serious diseases. Equipped with hOBPs, the sensor exhibited promising potentials both in odorant and biomolecule detection for olfactory biosensing and in disease diagnosis and evaluation for biochemical detection. PMID:26710343

  19. Controls of maglev suspension systems

    SciTech Connect

    Cai, Y.; Zhu, S.; Chen, S.S.; Rote, D.M.

    1993-06-01

    This study investigates alternative control designs of maglev vehicle suspension systems. Active and semi-active control law designs are introduced into primary and secondary suspensions of maglev vehicles. A one-dimensional vehicle with two degrees of freedom, to simulate the German Transrapid Maglev System, is used for suspension control designs. The transient and frequency responses of suspension systems and PSDs of vehicle accelerations are calculated to evaluate different control designs. The results show that active and semi-active control designs indeed improve the response of vehicle and provide an acceptable ride comfort for maglev systems.

  20. Musical-Noise Analysis in Methods of Integrating Microphone Array and Spectral Subtraction Based on Higher-Order Statistics

    NASA Astrophysics Data System (ADS)

    Takahashi, Yu; Saruwatari, Hiroshi; Shikano, Kiyohiro; Kondo, Kazunobu

    2010-12-01

    We conduct an objective analysis on musical noise generated by two methods of integrating microphone array signal processing and spectral subtraction. To obtain better noise reduction, methods of integrating microphone array signal processing and nonlinear signal processing have been researched. However, nonlinear signal processing often generates musical noise. Since such musical noise causes discomfort to users, it is desirable that musical noise is mitigated. Moreover, it has been recently reported that higher-order statistics are strongly related to the amount of musical noise generated. This implies that it is possible to optimize the integration method from the viewpoint of not only noise reduction performance but also the amount of musical noise generated. Thus, we analyze the simplest methods of integration, that is, the delay-and-sum beamformer and spectral subtraction, and fully clarify the features of musical noise generated by each method. As a result, it is clarified that a specific structure of integration is preferable from the viewpoint of the amount of generated musical noise. The validity of the analysis is shown via a computer simulation and a subjective evaluation.

  1. 20 CFR 416.1320 - Suspensions; general.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 20 Employees' Benefits 2 2010-04-01 2010-04-01 false Suspensions; general. 416.1320 Section 416..., BLIND, AND DISABLED Suspensions and Terminations § 416.1320 Suspensions; general. (a) When suspension is proper. Suspension of benefit payments is required when a recipient is alive but no longer meets...

  2. 20 CFR 416.1320 - Suspensions; general.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 20 Employees' Benefits 2 2011-04-01 2011-04-01 false Suspensions; general. 416.1320 Section 416..., BLIND, AND DISABLED Suspensions and Terminations § 416.1320 Suspensions; general. (a) When suspension is proper. Suspension of benefit payments is required when a recipient is alive but no longer meets...

  3. A Comparative Analysis for Verification of IMRT and VMAT Treatment Plans using a 2-D and 3-D Diode Array

    NASA Astrophysics Data System (ADS)

    Dance, Michael J.

    With the added complexity of current radiation treatment dose delivery modalities such as IMRT (Intensity Modulated Radiation Therapy) and VMAT (Volumetric Modulated Arc Therapy), quality assurance (QA) of these plans become multifaceted and labor intensive. To simplify the patient specific quality assurance process, 2D or 3D diode arrays are used to measure the radiation fluence for IMRT and VMAT treatments which can then be quickly and easily compared against the planned dose distribution. Because the arrays that can be used for IMRT and VMAT patient-specific quality assurance are of different geometry (planar vs. cylindrical), the same IMRT or VMAT treatment plan measured by two different arrays could lead to different measured radiation fluences, regardless of the output and performance of linear accelerator. Thus, the purpose of this study is to compare patient specific QA results as measured by the MapCHECK 2 and ArcCHECK diode arrays for the same IMRT and VMAT treatment plans to see if one diode array consistently provides a closer comparison to reference data. Six prostate and three thoracic spine IMRT treatment plans as well as three prostate and three thoracic spine VMAT treatment plans were produced. Radiotherapy plans for this study were generated using the Pinnacle TPS v9.6 (Philips Radiation Oncology Systems, Fitchburg, WI) using 6 MV, 6 MV FFF, and 10 MV x-ray beams from a Varian TrueBeam linear accelerator (Varian Medical Systems, Palo Alto, CA) with a 120-millenium multi-leaf collimator (MLC). Each IMRT and VMAT therapy plan was measured on Sun Nuclear's MapCHECK 2 and ArcCHECK diode arrays. IMRT measured data was compared with planned dose distribution using Sun Nuclear's 3DVH quality assurance software program using gamma analysis and dose-volume histograms for target volumes and critical structures comparison. VMAT arc plans measured on the MapCHECK 2 and ArcCHECK were compared using beam-by-beam analysis with the gamma evaluation method with

  4. Electrofiltration of Aqueous Suspensions.

    PubMed

    Zhang; Tan; Neoh; Tien

    2000-08-15

    Electrofiltration of hydrosols in fixed-bed filters was studied experimentally. The experimental variables examined included media type, electric field strength, and suspension pH values. The extent of particle removal was found to improve with the application of the electric field, and lower pH values favor particle collection. The filtrate quality displayed the transient behavior of increasing particle concentration with time. A simple model which assumes that the filter coefficient decreases linearly with the extent of deposition was developed and found capable of predicting the observed behavior. Copyright 2000 Academic Press.

  5. Floral classification of honey using liquid chromatography-diode array detection-tandem mass spectrometry and chemometric analysis.

    PubMed

    Zhou, Jinhui; Yao, Lihu; Li, Yi; Chen, Lanzhen; Wu, Liming; Zhao, Jing

    2014-02-15

    A high performance liquid chromatography-diode array detection-tandem mass spectrometry (HPLC-DAD-MS/MS) method for the floral origin traceability of chaste honey and rape honey samples was firstly presented in this study. Kaempferol, morin and ferulic acid were used as floral markers to distinguish chaste honey from rape honey. Chromatographic fingerprinting at 270 nm and 360 nm could be used to characterise chaste honey and rape honey according to the analytical profiles. Principal component analysis (PCA), partial least squares (PLS), partial least squares-discrimination analysis (PLS-DA) and soft independent modeling of class analogy (SIMCA) were applied to classify the honey samples according to their floral origins. The results showed that chaste honey and rape honey could be successfully classified by their floral sources with the analytical methods developed through this study and could be considered encouraging and promising for the honey traceability from unifloral or multifloral nectariferous sources.

  6. High Throughput Sample Preparation and Analysis for DNA Sequencing, PCR and Combinatorial Screening of Catalysis Based on Capillary Array Technique

    SciTech Connect

    Yonghua Zhang

    2002-05-27

    Sample preparation has been one of the major bottlenecks for many high throughput analyses. The purpose of this research was to develop new sample preparation and integration approach for DNA sequencing, PCR based DNA analysis and combinatorial screening of homogeneous catalysis based on multiplexed capillary electrophoresis with laser induced fluorescence or imaging UV absorption detection. The author first introduced a method to integrate the front-end tasks to DNA capillary-array sequencers. protocols for directly sequencing the plasmids from a single bacterial colony in fused-silica capillaries were developed. After the colony was picked, lysis was accomplished in situ in the plastic sample tube using either a thermocycler or heating block. Upon heating, the plasmids were released while chromsomal DNA and membrane proteins were denatured and precipitated to the bottom of the tube. After adding enzyme and Sanger reagents, the resulting solution was aspirated into the reaction capillaries by a syringe pump, and cycle sequencing was initiated. No deleterious effect upon the reaction efficiency, the on-line purification system, or the capillary electrophoresis separation was observed, even though the crude lysate was used as the template. Multiplexed on-line DNA sequencing data from 8 parallel channels allowed base calling up to 620 bp with an accuracy of 98%. The entire system can be automatically regenerated for repeated operation. For PCR based DNA analysis, they demonstrated that capillary electrophoresis with UV detection can be used for DNA analysis starting from clinical sample without purification. After PCR reaction using cheek cell, blood or HIV-1 gag DNA, the reaction mixtures was injected into the capillary either on-line or off-line by base stacking. The protocol was also applied to capillary array electrophoresis. The use of cheaper detection, and the elimination of purification of DNA sample before or after PCR reaction, will make this approach an

  7. Processing of translational and rotational motions of surface waves: performance analysis and applications to single sensor and to array measurements

    NASA Astrophysics Data System (ADS)

    Maranò, Stefano; Fäh, Donat

    2014-01-01

    The analysis of rotational seismic motions has received considerable attention in the last years. Recent advances in sensor technologies allow us to measure directly the rotational components of the seismic wavefield. Today this is achieved with improved accuracy and at an affordable cost. The analysis and the study of rotational motions are, to a certain extent, less developed than other aspects of seismology due to the historical lack of instrumental observations. This is due to both the technical challenges involved in measuring rotational motions and to the widespread belief that rotational motions are insignificant. This paper addresses the joint processing of translational and rotational motions from both the theoretical and the practical perspectives. Our attention focuses on the analysis of motions of both Rayleigh waves and Love waves from recordings of single sensors and from an array of sensors. From the theoretical standpoint, analysis of Fisher information (FI) allows us to understand how the different measurement types contribute to the estimation of quantities of geophysical interest. In addition, we show how rotational measurements resolve ambiguity on parameter estimation in the single sensor setting. We quantify the achievable estimation accuracy by means of Cramér-Rao bound (CRB). From the practical standpoint, a method for the joint processing of rotational and translational recordings to perform maximum likelihood (ML) estimation is presented. The proposed technique estimates parameters of Love waves and Rayleigh waves from single sensor or array recordings. We support and illustrate our findings with a comprehensive collection of numerical examples. Applications to real recordings are also shown.

  8. Disposable micro-fluidic biosensor array for online parallelized cell adhesion kinetics analysis on quartz crystal resonators

    NASA Astrophysics Data System (ADS)

    Cama, G.; Jacobs, T.; Dimaki, M. I.; Svendsen, W. E.; Hauptmann, P.; Naumann, M.

    2010-08-01

    In this contribution we present a new disposable micro-fluidic biosensor array for the online analysis of adherent Madin Darby canine kidney (MDCK-II) cells on quartz crystal resonators (QCRs). The device was conceived for the parallel cultivation of cells providing the same experimental conditions among all the sensors of the array. As well, dedicated sensor interface electronics were developed and optimized for fast spectra acquisition of all 16 QCRs with a miniaturized impedance analyzer. This allowed performing cell cultivation experiments for the observation of fast cellular reaction kinetics with focus on the comparison of the resulting sensor signals influenced by different cell distributions on the sensor surface. To prove the assumption of equal flow circulation within the symmetric micro-channel network and support the hypothesis of identical cultivation conditions for the cells living above the sensors, the influence of fabrication tolerances on the flow regime has been simulated. As well, the shear stress on the adherent cell layer due to the flowing media was characterized. Injection molding technology was chosen for the cheap mass production of disposable devices. Furthermore, the injection molding process was simulated in order to optimize the mold geometry and minimize the shrinkage and the warpage of the parts. MDCK-II cells were cultivated in the biosensor array. Parallel cultivation of cells on the gold surface of the QCRs led to first observations of the impact of the cell distribution on the sensor signals during cell cultivation. Indeed, the initial cell distribution revealed a significant influence on the changes in the measured acoustic load on the QCRs suggesting dissimilar cell migrations as well as proliferation kinetics of a non-confluent MDCK-II cell layer.

  9. Modeling and stress analysis of large format InSb focal plane arrays detector under thermal shock

    NASA Astrophysics Data System (ADS)

    Zhang, Li-Wen; Meng, Qing-Duan; Zhang, Xiao-Ling; Yu, Qian; Lv, Yan-Qiu; Si, Jun-Jie

    2013-09-01

    Higher fracture probability, appearing in large format InSb infrared focal plane arrays detector under thermal shock loadings, limits its applicability and suitability for large format equipment, and has been an urgent problem to be solved. In order to understand the fracture mechanism and improve the reliability, three dimensional modeling and stress analysis of large format InSb detector is necessary. However, there are few reports on three dimensional modeling and simulation of large format InSb detector, due to huge meshing numbers and time-consuming operation to solve. To solve the problems, basing on the thermal mismatch displacement formula, an equivalent modeling method is proposed in this paper. With the proposed equivalent modeling method, employing the ANSYS software, three dimensional large format InSb detector is modeled, and the maximum Von Mises stress appearing in InSb chip dependent on array format is researched. According to the maximum Von Mises stress location shift and stress increasing tendency, the adaptability range of the proposed equivalent method is also derived, that is, for 16 × 16, 32 × 32 and 64 × 64 format, its adaptability ranges are not larger than 64 × 64, 256 × 256 and 1024 × 1024 format, respectively. Taking 1024 × 1024 InSb detector as an example, the Von Mises stress distribution appearing in InSb chip, Si readout integrated circuits and indium bump arrays are described, and the causes are discussed in detail. All these will provide a feasible research plan to identify the fracture origins of InSb chip and reduce fracture probability for large format InSb detector.

  10. Nonlinear waveform analysis for water-layer response and its application to high-frequency receiver function analysis using OBS array

    NASA Astrophysics Data System (ADS)

    Akuhara, Takeshi; Mochizuki, Kimihiro; Kawakatsu, Hitoshi; Takeuchi, Nozomu

    2016-07-01

    Determination of a response of the seawater column to teleseismic plane wave is important to suppress adverse effects of water reverberations in calculating receiver functions (RFs) using ocean-bottom seismometer (OBS) records. We present a novel nonlinear-waveform analysis method using the simulated annealing algorithm to determine such a water-layer response recorded by an OBS array. We then demonstrate its usefulness for the RF estimation through its application to synthetic and observed data. Synthetic experiments suggest that the water-layer response constrained in this way has a potential to improve RFs of OBS records drastically even in the high-frequency range (to 4 Hz). By applying it to data observed by the OBS array around the Kii Peninsula, southwestern Japan, we identified a low-velocity zone at the top of the subducting Philippine Sea plate. This zone may represent the incoming fluid-rich sediment layer that has been reported by active source seismic survey.

  11. Genomic analysis by oligonucleotide array Comparative Genomic Hybridization utilizing formalin-fixed, paraffin-embedded tissues.

    PubMed

    Savage, Stephanie J; Hostetter, Galen

    2011-01-01

    Formalin fixation has been used to preserve tissues for more than a hundred years, and there are currently more than 300 million archival samples in the United States alone. The application of genomic protocols such as high-density oligonucleotide array Comparative Genomic Hybridization (aCGH) to formalin-fixed, paraffin-embedded (FFPE) tissues, therefore, opens an untapped resource of available tissues for research and facilitates utilization of existing clinical data in a research sample set. However, formalin fixation results in cross-linking of proteins and DNA, typically leading to such a significant degradation of DNA template that little is available for use in molecular applications. Here, we describe a protocol to circumvent formalin fixation artifact by utilizing enzymatic reactions to obtain quality DNA from a wide range of FFPE tissues for successful genome-wide discovery of gene dosage alterations in archival clinical samples.

  12. Fiber optic liquid level monitoring system using microstructured polymer fiber Bragg grating array sensors: performance analysis

    NASA Astrophysics Data System (ADS)

    Marques, C. A. F.; Pospori, A.; Sáez-Rodríguez, D.; Nielsen, K.; Bang, O.; Webb, D. J.

    2015-09-01

    A highly sensitive liquid level monitoring system based on microstructured polymer optical fiber Bragg grating (mPOFBG) array sensors is reported for the first time. The configuration is based on five mPOFBGs inscribed in the same fiber in the 850 nm spectral region, showing the potential to interrogate liquid level by measuring the strain induced in each mPOFBG embedded in a silicone rubber (SR) diaphragm, which deforms due to hydrostatic pressure variations. The sensor exhibits a highly linear response over the sensing range, a good repeatability, and a high resolution. The sensitivity of the sensor is found to be 98 pm/cm of water, enhanced by more than a factor of 9 when compared to an equivalent sensor based on a silica fiber around 1550 nm. The temperature sensitivity is studied and a multi-sensor arrangement proposed, which has the potential to provide level readings independent of temperature and the liquid density.

  13. Theoretical analysis of H-Horn annular phased array system for heating deep-seated tumors.

    PubMed

    Tianquan, D; Zheng, L; Wei, R

    1991-01-01

    This paper discusses a type of annular phased array system--H-Horn APA. The phase and amplitude control of power deposition patterns for this system are theoretically analyzed at a frequency of 200 MHz. The formulas for calculating E-field and SAR for this APA system are derived, and can be applied to other type APA systems. Models of computerized tomography (CT) scans from liver and lung regions have been used, respectively, for predicting optimization of E-field and SAR patterns in the case of the relative phase and amplitude changes. It is shown that the techniques of the phase and amplitude control of SAR patterns result in more selectively and effectively heating of tumors situated eccentrically and deeply within bodies of patients. The APA hyperthermia described in this paper shows great promise, and it looks very useful for developing clinical applications.

  14. Analysis of thermal conditions of high-power semiconductor lasers and their arrays

    SciTech Connect

    Mikaelyan, G T

    2006-03-31

    The results of thermophysical investigations of semiconductor lasers are reported, which underlie the formulation of the optimal requirements on the materials, design parameters, and technological assembling conditions for high-power semiconductor lasers and their one- and two-dimensional arrays with the goal of most efficient heat removal. The methods are outlined for calculating the residual post-assembling mechanical stress and determining the assemblage conditions under which the attendant stress is insignificant and its effect on the laser quality is minimal. Also the methods are given for calculating the thermal resistance for different heat sinks, including heat sinks with forced cooling, and of determining the design requirements on the heat sink arising from specific service conditions. (lasers)

  15. Analysis of an infinite array of rectangular microstrip patches with idealized probe feeds

    NASA Technical Reports Server (NTRS)

    Pozar, D. M.; Schaubert, D. H.

    1984-01-01

    A solution is presented to the problem of an infinite array of microstrip patches fed by idealized current probes. The input reflection coefficient is calculated versus scan angle in an arbitrary scan plane, and the effects of substrate parameters and grid spacing are considered. It is pointed out that even when a Galerkin method is used the impedance matrix is not symmetric due to phasing through a unit cell, as required for scanning. The mechanism by which scan blindness can occur is discussed. Measurement results are presented for the reflection coefficient magnitude variation with angle for E-plane, H-plane, and D-plane scans, for various substrate parameters. Measured results from waveguide simulators are also presented, and the scan blindness phenomenon is observed and discussed in terms of forced surface waves and a modified grating lobe diagram.

  16. Experimental analysis of beam pointing system based on liquid crystal optical phase array

    NASA Astrophysics Data System (ADS)

    Shi, Yubin; Zhang, Jianmin; Zhang, Zhen

    2016-06-01

    In this paper, we propose and demonstrate an elementary non-mechanical beam aiming and steering system with a single liquid crystal optical phase array (LC-OPA) and charge-coupled device (CCD). With the conventional method of beam steering control, the LC-OPA device can realize one dimensional beam steering continuously. An improved beam steering strategy is applied to realize two dimensional beam steering with a single LC-OPA. The whole beam aiming and steering system, including an LC-OPA and a retroreflective target, is controlled by the monitor. We test the feasibility of beam steering strategy both in one dimension and in two dimension at first, then the whole system is build up based on the improved strategy. The experimental results show that the max experimental pointing error is 56 µrad, and the average pointing error of the system is 19 µrad.

  17. Consolidation of colloidal suspensions

    SciTech Connect

    Shih, Wei-Heng; Kim, Seong Il; Shih, Wan Y.; Aksay, I.A. ); Schilling, C.H. Pacific Northwest Lab., Richland, WA )

    1990-08-01

    A key step in the processing of ceramics is the consolidation of powders into engineered shapes. Colloidal processing uses solvents (usually water) and dispersants to break up powder agglomerates in suspension and thereby reduce the pore size in a consolidated compact. However, agglomeration and particle rearrangement leading to pore enlargement can still occur during drying. Therefore, it is beneficial to consolidate the compact as densely as possible during the suspension stage. The consolidation techniques of pressure filtration and centrifugation were studied and the results are reported in this paper. In particular, the steady-state pressure- density relationship was studied, and information was obtained regarding the consolidation process, the microstructure, and the average density profile of consolidated cakes. Recently, we performed Monte Carlo simulations on a cluster-cluster aggregation model with restructuring, and found the exponential relationship between pressure and density is indeed the result of the breaking up of the fractal structural units. Furthermore, we calculated density profiles from the bottom to the top of the consolidated cakes by solving the local static force balance equation in the continuum particulate network. 11 refs., 3 figs.

  18. Improved Protein Arrays for Quantitative Systems Analysis of the Dynamics of Signaling Pathway Interactions

    SciTech Connect

    YANG, CHIN-RANG

    2013-12-11

    Astronauts and workers in nuclear plants who repeatedly exposed to low doses of ionizing radiation (IR, <10 cGy) are likely to incur specific changes in signal transduction and gene expression in various tissues of their body. Remarkable advances in high throughput genomics and proteomics technologies enable researchers to broaden their focus from examining single gene/protein kinetics to better understanding global gene/protein expression profiling and biological pathway analyses, namely Systems Biology. An ultimate goal of systems biology is to develop dynamic mathematical models of interacting biological systems capable of simulating living systems in a computer. This Glue Grant is to complement Dr. Boothman’s existing DOE grant (No. DE-FG02-06ER64186) entitled “The IGF1/IGF-1R-MAPK-Secretory Clusterin (sCLU) Pathway: Mediator of a Low Dose IR-Inducible Bystander Effect” to develop sensitive and quantitative proteomic technology that suitable for low dose radiobiology researches. An improved version of quantitative protein array platform utilizing linear Quantum dot signaling for systematically measuring protein levels and phosphorylation states for systems biology modeling is presented. The signals are amplified by a confocal laser Quantum dot scanner resulting in ~1000-fold more sensitivity than traditional Western blots and show the good linearity that is impossible for the signals of HRP-amplification. Therefore this improved protein array technology is suitable to detect weak responses of low dose radiation. Software is developed to facilitate the quantitative readout of signaling network activities. Kinetics of EGFRvIII mutant signaling was analyzed to quantify cross-talks between EGFR and other signaling pathways.

  19. 48 CFR 209.407 - Suspension.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 48 Federal Acquisition Regulations System 3 2011-10-01 2011-10-01 false Suspension. 209.407... OF DEFENSE ACQUISITION PLANNING CONTRACTOR QUALIFICATIONS Debarment, Suspension, and Ineligibility 209.407 Suspension....

  20. 48 CFR 209.407 - Suspension.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 48 Federal Acquisition Regulations System 3 2010-10-01 2010-10-01 false Suspension. 209.407... OF DEFENSE ACQUISITION PLANNING CONTRACTOR QUALIFICATIONS Debarment, Suspension, and Ineligibility 209.407 Suspension....