Science.gov

Sample records for suspension array analysis

  1. Novel design for suspension array detection system

    NASA Astrophysics Data System (ADS)

    Xu, Guoxiong; Shi, Yan; Ni, Xuxiang; Lu, Zukang

    2005-01-01

    This paper presents a novel method for establishing a two-dimensional laminar fluidic suspension array which is analyzed by using time delay integration (TDI) CCD imaging technology in parallel. The method will make suspension array technology (SAT) bear high throughput as well as its flexibility. Basically, bioassays are conducted on the surface of fluorescent-dyed beads. With each bead set (i.e., multiple beads with the same fluorescent signature) having a slightly different fluorescent signature, probes are first attached to a particular bead set and then hybridized with labeled samples or targets. Two different kinds of encoding dyes are excited by red laser (635 nm, 20mw), their emission wave length are 660nm, 720nm, respectively. Fluorescent dye of reporter molecules was excited by green laser (532nm, 20mw), emitted at 580 nm. The liquid sample was pumped into micro-reservoir by a linear motor. As the velocity of liquid sample is so slow (10mm/s) it is easy to form a laminar fluidic field in the middle of the micro-reservoir. In the direction of laser propagation the size of reservoir is 0.1mm so the laminar liquid can be treated as a two-dimensional fluidic plane. The size of detection area depends on size of micro-sphere and CCD imaging area. The three kinds of fluorescence signals were focused by a lens and then split by mirrors. Fluorescence pass through three band-pass filters (+/-20nm) before collected by three TDI-CCDs respectively. With these high-quality filters the cross-talk between signals was diminished significantly. The analysis speed is about 2x103 micro-spheres per second, which is much higher than that obtained from currently cytometry method (about 102 micro-spheres to the same size micro-spheres).

  2. Highly specific detection of thrombin using an aptamer-based suspension array and the interaction analysis via microscale thermophoresis.

    PubMed

    Liu, Yanan; Liu, Nan; Ma, Xinhua; Li, Xiaoli; Ma, Jia; Li, Ya; Zhou, Zhijiang; Gao, Zhixian

    2015-04-21

    A novel aptamer-based suspension array detection platform was designed for the sensitive, specific and rapid detection of human α-thrombin as a model. Thrombin was first recognized by a 29-mer biotinylated thrombin-binding aptamer (TBA) in solution. Then 15-mer TBA modified magnetic beads (MBs) captured the former TBA-thrombin to form an aptamer-thrombin-aptamer sandwich complex. The median fluorescence intensity obtained via suspension array technology was positively correlated with the thrombin concentration. The interactions between TBAs and thrombin were analyzed using microscale thermophoresis (MST). The dissociation constants could be respectively achieved to be 44.2 ± 1.36 nM (TBA1-thrombin) and 15.5 ± 0.637 nM (TBA2-thrombin), which demonstrated the high affinities of TBA-thrombin and greatly coincided with previous reports. Interaction conditions such as temperature, reaction time, and coupling protocol were optimized. The dynamic quantitative working range of the aptamer-based suspension array was 18.37-554.31 nM, and the coefficients of determination R(2) were greater than 0.9975. The lowest detection limit of thrombin was 5.4 nM. This method was highly specific for thrombin without being affected by other analogs and interfering proteins. The recoveries of thrombin spiked in diluted human serum were in the range 82.6-114.2%. This innovative aptamer-based suspension array detection platform not only exhibits good sensitivity based on MBs facilitating highly efficient separation and amplification, but also suggests high specificity by the selective aptamer binding, thereby suggesting the expansive application prospects in research and clinical fields.

  3. Digital barcodes of suspension array using laser induced breakdown spectroscopy

    PubMed Central

    He, Qinghua; Liu, Yixi; He, Yonghong; Zhu, Liang; Zhang, Yilong; Shen, Zhiyuan

    2016-01-01

    We show a coding method of suspension array based on the laser induced breakdown spectroscopy (LIBS), which promotes the barcodes from analog to digital. As the foundation of digital optical barcodes, nanocrystals encoded microspheres are prepared with self-assembly encapsulation method. We confirm that digital multiplexing of LIBS-based coding method becomes feasible since the microsphere can be coded with direct read-out data of wavelengths, and the method can avoid fluorescence signal crosstalk between barcodes and analyte tags, which lead to overall advantages in accuracy and stability to current fluorescent multicolor coding method. This demonstration increases the capability of multiplexed detection and accurate filtrating, expanding more extensive applications of suspension array in life science. PMID:27808270

  4. Suspension Array Analysis of 16S rRNA from Fe- and SO 2-4 Reducing Bacteria in Uranium Contaminated Sediments Undergoing Bioremediation

    SciTech Connect

    Chandler, Darrell P.; Jarrell, Ann E.; Roden , Eric R.; Golova, Julia; Chernov, Boris; Schipma, Matthew; Peacock, Aaron D.; Long, Philip E.

    2006-07-15

    A 16S rRNA-targeted tunable bead array 2 was developed and applied in a retrospective analysis of metal- and sulfate-reducing bacteria in contaminated subsurface 4 sediments undergoing in situ U(VI) bioremediation. Total RNA was extracted from subsurface sediments and interrogated directly, without employing a polymerase chain 6 reaction step. Bead array validation studies with total RNA derived from 26 isolates indicate that the behavior and response of the 16S rRNA-targeted oligonucleotide probes 8 could not be predicted based upon primary nucleic acid sequence. Likewise, signal intensity (absolute or normalized) could not be used to assess the relative abundance of 10 one organism (or rRNA) to another. Nevertheless, microbial community structure and dynamics through time and space and as measured by the rRNA-targeted bead array were 12 consistent with previous data acquired at the site, where indigenous sulfate and iron reducing bacteria and Desulfotomaculum near neighbors were the most responsive to a 14 change in injected acetate concentrations. Interpreting bead array data was best accomplished by analyzing the relative change in probe response over spatially and 16 temporally related samples, and by only considering the response of one probe to itself in relation to a background (reference) environmental sample. By limiting the data 18 interpretation in this manner and placing it within the context of supporting geochemical and microbiological analyses, we conclude that ecologically relevant and meaningful 20 information can be derived from direct microarray analysis of rRNA in uncharacterized environmental samples, even amidst current analytical uncertainty surrounding individual 22 probe behavior on tunable bead arrays.

  5. Suspension array analysis of 16S rRNA from Fe- and SO(4)2- reducing bacteria in uranium-contaminated sediments undergoing bioremediation.

    PubMed

    Chandler, Darrell P; Jarrell, Ann E; Roden, Eric R; Golova, Julia; Chernov, Boris; Schipma, Matthew J; Peacock, Aaron D; Long, Philip E

    2006-07-01

    A 16S rRNA-targeted tunable bead array was developed and used in a retrospective analysis of metal- and sulfate-reducing bacteria in contaminated subsurface sediments undergoing in situ U(VI) bioremediation. Total RNA was extracted from subsurface sediments and interrogated directly, without a PCR step. Bead array validation studies with total RNA derived from 24 isolates indicated that the behavior and response of the 16S rRNA-targeted oligonucleotide probes could not be predicted based on the primary nucleic acid sequence. Likewise, signal intensity (absolute or normalized) could not be used to assess the abundance of one organism (or rRNA) relative to the abundance of another organism (or rRNA). Nevertheless, the microbial community structure and dynamics through time and space and as measured by the rRNA-targeted bead array were consistent with previous data acquired at the site, where indigenous sulfate- and iron-reducing bacteria and near neighbors of Desulfotomaculum were the organisms that were most responsive to a change in injected acetate concentrations. Bead array data were best interpreted by analyzing the relative changes in the probe responses for spatially and temporally related samples and by considering only the response of one probe to itself in relation to a background (reference) environmental sample. By limiting the interpretation of the data in this manner and placing it in the context of supporting geochemical and microbiological analyses, we concluded that ecologically relevant and meaningful information can be derived from direct microarray analysis of rRNA in uncharacterized environmental samples, even with the current analytical uncertainty surrounding the behavior of individual probes on tunable bead arrays.

  6. Suspension Array Analysis of 16S rRNA from Fe- and SO42-Reducing Bacteria in Uranium-Contaminated Sediments Undergoing Bioremediation

    PubMed Central

    Chandler, Darrell P.; Jarrell, Ann E.; Roden, Eric R.; Golova, Julia; Chernov, Boris; Schipma, Matthew J.; Peacock, Aaron D.; Long, Philip E.

    2006-01-01

    A 16S rRNA-targeted tunable bead array was developed and used in a retrospective analysis of metal- and sulfate-reducing bacteria in contaminated subsurface sediments undergoing in situ U(VI) bioremediation. Total RNA was extracted from subsurface sediments and interrogated directly, without a PCR step. Bead array validation studies with total RNA derived from 24 isolates indicated that the behavior and response of the 16S rRNA-targeted oligonucleotide probes could not be predicted based on the primary nucleic acid sequence. Likewise, signal intensity (absolute or normalized) could not be used to assess the abundance of one organism (or rRNA) relative to the abundance of another organism (or rRNA). Nevertheless, the microbial community structure and dynamics through time and space and as measured by the rRNA-targeted bead array were consistent with previous data acquired at the site, where indigenous sulfate- and iron-reducing bacteria and near neighbors of Desulfotomaculum were the organisms that were most responsive to a change in injected acetate concentrations. Bead array data were best interpreted by analyzing the relative changes in the probe responses for spatially and temporally related samples and by considering only the response of one probe to itself in relation to a background (reference) environmental sample. By limiting the interpretation of the data in this manner and placing it in the context of supporting geochemical and microbiological analyses, we concluded that ecologically relevant and meaningful information can be derived from direct microarray analysis of rRNA in uncharacterized environmental samples, even with the current analytical uncertainty surrounding the behavior of individual probes on tunable bead arrays. PMID:16820459

  7. Simultaneous and rapid detection of multiple pesticide and veterinary drug residues by suspension array technology.

    PubMed

    Liu, Nan; Gao, Zhixian; Ma, Hongwei; Su, Pu; Ma, Xinhua; Li, Xiaoli; Ou, Guorong

    2013-03-15

    Suspension array technology is proposed for the simultaneous quantitative determination of seven kinds of pesticide and veterinary drug residues, namely, atrazine, chloramphenicol, carbaryl, clenbuterol, 17-β-estradiol, imidacloprid, and tylosin. The assay is simple and can be accomplished within 2h without repeated pumping and washing steps unlike conventional suspension arrays. The hapten-protein conjugate-coated beads bind to their complementary biotinylated antibodies using a competitive immunoassay format. The coefficients of determination R(2) for six targets were greater than 0.992, whereas that for atrazine was 0.961, which indicate good logistic correlations. The dynamic ranges for the seven targets in the 7-plex assay ranged from 2 log units to 4 log units(1.60×10(0)-1.64×10(3), 5.12×10(-2)-1.60×10(2), 1.00×10(0)-3.13×10(3), 4.00×10(-1)-4.10×10(2), 4.00×10(-1)-4.10×10(2), 5.12×10(-2)-1.60×10(2), and 2.00×10(0)-4.00×10(2)ngmL(-1)). The minimum detection concentrations of chloramphenicol, carbaryl, clenbuterol and 17-β-estradiol in the suspension array (0.05, 1.00, 0.40 and 0.40 ng mL(-1)) were lower than the corresponding limits of detection (0.25, 6.60, 24.23 and 13.96 ng mL(-1)) of using an indirect competitive enzyme-linked immunosorbent assay. Environmental scanning electron microscope was employed to characterize the bead surface, which directly confirmed the reactions on the beads. The suspension array is more flexible and feasible than ELISA for the fast quantitative analysis of pesticide and veterinary drug residues.

  8. Simultaneous Detection of Fenitrothion and Chlorpyrifos-Methyl with a Photonic Suspension Array

    PubMed Central

    Wang, Xuan; Mu, Zhongde; Shangguan, Fengqi; Liu, Ran; Pu, Yuepu; Yin, Lihong

    2013-01-01

    A technique was developed for simultaneous detection of fenitrothion (FNT) and chlorpyrifos-methyl (CLT) using a photonic suspension array based on silica colloidal crystal beads (SCCBs). The SCCBs were encoded with the characteristic reflection peak originating from the stop-band of colloidal crystal. This approach avoids the bleaching, fading or potential interference seen when encoding by fluorescence. SCCBs with a nanopatterned surface had increased biomolecule binding capacity and improved stability. Under optimal conditions, the proposed suspension array allowed simultaneous detection of the selected pesticides in the ranges of 0.25 to 1024 ng/mL and 0.40 to 735.37 ng/mL, with the limits of detection (LODs) of 0.25 and 0.40 ng/mL, respectively. The suspension array was specific and had no significant cross-reactivity with other chemicals. The mean recoveries in tests in which samples were spiked with target standards were 82.35% to 109.90% with a standard deviation within 9.93% for CLT and 81.64% to 108.10% with a standard deviation within 8.82% for FNT. The proposed method shows a potentially powerful capability for fast quantitative analysis of pesticide residues. PMID:23805266

  9. Comparative protein profiling of serum and plasma using an antibody suspension bead array approach.

    PubMed

    Schwenk, Jochen M; Igel, Ulrika; Kato, Bernet S; Nicholson, George; Karpe, Fredrik; Uhlén, Mathias; Nilsson, Peter

    2010-02-01

    In the pursuit towards a systematic analysis of human diseases, array-based approaches within antibody proteomics offer high-throughput strategies to discover protein biomarkers in serum and plasma. To investigate the influence of sample preparation on such discovery attempts, we report on a systematic effort to compare serum and plasma protein profiles determined with an antibody suspension bead array. The intensity levels were used to define protein profiles and no significant differences between serum and plasma were observed for 79% of the 174 antibodies (targeting 156 proteins). By excluding 36 antibodies giving rise to differential intensity levels, cluster analysis revealed donor-specific rather than preparation-dependent grouping. With a cohort from a clinically relevant medical condition, the metabolic syndrome, the influence of the sample type on a multiplexed biomarker discovery approach was further investigated. Independent comparisons of protein profiles in serum and plasma revealed an antibody targeting ADAMTSL-4, a protein that would qualify to be studied further in association with the condition. In general, the preparation type had an impact on the results of the applied antibody suspension bead array, and while the technical variability was equal, plasma offered a greater biological variability and allowed to give rise to more discoveries than serum.

  10. Suspension arrays based on nanoparticle-encoded microspheres for high-throughput multiplexed detection

    PubMed Central

    Leng, Yuankui

    2017-01-01

    Spectrometrically or optically encoded microsphere based suspension array technology (SAT) is applicable to the high-throughput, simultaneous detection of multiple analytes within a small, single sample volume. Thanks to the rapid development of nanotechnology, tremendous progress has been made in the multiplexed detecting capability, sensitivity, and photostability of suspension arrays. In this review, we first focus on the current stock of nanoparticle-based barcodes as well as the manufacturing technologies required for their production. We then move on to discuss all existing barcode-based bioanalysis patterns, including the various labels used in suspension arrays, label-free platforms, signal amplification methods, and fluorescence resonance energy transfer (FRET)-based platforms. We then introduce automatic platforms for suspension arrays that use superparamagnetic nanoparticle-based microspheres. Finally, we summarize the current challenges and their proposed solutions, which are centered on improving encoding capacities, alternative probe possibilities, nonspecificity suppression, directional immobilization, and “point of care” platforms. Throughout this review, we aim to provide a comprehensive guide for the design of suspension arrays, with the goal of improving their performance in areas such as multiplexing capacity, throughput, sensitivity, and cost effectiveness. We hope that our summary on the state-of-the-art development of these arrays, our commentary on future challenges, and some proposed avenues for further advances will help drive the development of suspension array technology and its related fields. PMID:26021602

  11. [Development of a multiplex PCR-suspension array for simultaneous detection of five bioterrorism bacteria].

    PubMed

    Wen, Hai-yan; Wang, Jing; Liu, Heng-chuan; Yang, Yu; Hu, Kong-xin; Sun, Xiao-hong

    2009-03-01

    To develop a rapid, high-throughput screening method of gene suspension array technique to simultaneously detect five bioterrorism bacteria: Bacillus anthracis, Francisella tularensis, Yersinia pestis, Brucella spp. and Burkholderia pseudomallei. Highly validated specific primers were used to amplify diagnostic regions unique to each pathogen. Biotin labelled PCR products were hybridized to corresponding probes coupling on the unique sets of fluorescent beads. The hybridized beads were processed through the Bio-plex, which identified the presence of PCR products. Multiplex PCR-suspension array can detect five bioterrorism bacteria correctly with high specificity and high sensitivity, the results suggest the utility of suspension array system for high-throughput screening of bioterrorism samples. A multiplex PCR-suspension array for rapid detection of five bioterrorism bacteria was established.

  12. The Sequencing Bead Array (SBA), a next-generation digital suspension array.

    PubMed

    Akhras, Michael S; Pettersson, Erik; Diamond, Lisa; Unemo, Magnus; Okamoto, Jennifer; Davis, Ronald W; Pourmand, Nader

    2013-01-01

    Here we describe the novel Sequencing Bead Array (SBA), a complete assay for molecular diagnostics and typing applications. SBA is a digital suspension array using Next-Generation Sequencing (NGS), to replace conventional optical readout platforms. The technology allows for reducing the number of instruments required in a laboratory setting, where the same NGS instrument could be employed from whole-genome and targeted sequencing to SBA broad-range biomarker detection and genotyping. As proof-of-concept, a model assay was designed that could distinguish ten Human Papillomavirus (HPV) genotypes associated with cervical cancer progression. SBA was used to genotype 20 cervical tumor samples and, when compared with amplicon pyrosequencing, was able to detect two additional co-infections due to increased sensitivity. We also introduce in-house software Sphix, enabling easy accessibility and interpretation of results. The technology offers a multi-parallel, rapid, robust, and scalable system that is readily adaptable for a multitude of microarray diagnostic and typing applications, e.g. genetic signatures, single nucleotide polymorphisms (SNPs), structural variations, and immunoassays. SBA has the potential to dramatically change the way we perform probe-based applications, and allow for a smooth transition towards the technology offered by genomic sequencing.

  13. A decoupled control approach for magnetic suspension systems using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Groom, Nelson J.

    1993-01-01

    A decoupled control approach for a Large Gap Magnetic Suspension System (LGMSS) is presented. The control approach is developed for an LGMSS which provides five degree-of-freedom control of a cylindrical suspended element that contains a core composed of permanent magnet material. The suspended element is levitated above five electromagnets mounted in a planar array. Numerical results are obtained by using the parameters of the Large Angle Magnetic Suspension Test Fixture (LAMSTF) which is a small scale laboratory model LGMSS.

  14. Suspension, Race, and Disability: Analysis of Statewide Practices and Reporting

    ERIC Educational Resources Information Center

    Krezmien, Michael P.; Leone, Peter E.; Achilles, Georgianna M.

    2006-01-01

    This analysis of statewide suspension data from 1995 to 2003 in Maryland investigated disproportionate suspensions of minority students and students with disabilities. We found substantial increases in over-all rates of suspensions from 1995 to 2003, as well as disproportionate rates of suspensions for African American students, American Indian…

  15. Rapid detection of common viruses using multi-analyte suspension arrays.

    PubMed

    Yu, Daojun; Wu, Shenghai; Wang, Baohong; Chen, Yunbo; Li, Lanjuan

    2011-10-01

    A method that uses specific oligonucleotide probes coupled to a specific array of fluorescent microspheres in multi-analyte suspension arrays was employed for the detection of common viruses, such as Herpes virus (HSV), Human papillomavirus (HPV) and Hepatitis B virus (HBV). Sixteen species-specific probes and 9 sets of specific primers were designed based on conserved sequences of these viruses in the GenBank database. Serial symmetric PCR, asymmetric PCR and multiple PCR assays were employed to evaluate the sensitivity, specificity and reproducibility of multi-analyte suspension arrays analyzed on a Luminex-100 analyzer instrument. The symmetric PCR amplification of four types of HSV, four types of HPV and HBV genotypes of B, C and D, combined with their corresponding species-specific probes and specificities were completely concordant with the results from a comparative sequence analyses. There was no significant difference in the median fluorescence intensity (MFI) value between symmetric PCR and asymmetric PCR when the viral DNA concentration was above 10(4)copies/test. Both PCR products were negative in the multi-analyte suspension arrays with viral DNA concentrations less than 10(3)copies/test. A multi-analyte suspension array is a flexible, high-throughput, relatively simple method for rapid identification of common viruses in the clinical laboratory. Copyright © 2011 Elsevier B.V. All rights reserved.

  16. Magnetic Suspension Array Technology: Controlled Synthesis and Screening in Microfluidic Networks.

    PubMed

    Lin, Gungun; Karnaushenko, Dmitriy D; Bermúdez, Gilbert Santiago Cañón; Schmidt, Oliver G; Makarov, Denys

    2016-09-01

    Information tagging and processing are vital in information-intensive applications, e.g., telecommunication and high-throughput drug screening. Magnetic suspension array technology may offer intrinsic advantages to screening applications by enabling high distinguishability, the ease of code generation, and the feasibility of fast code readout, though the practical applicability of magnetic suspension array technology remains hampered by the lack of quality administration of encoded microcarriers. Here, a logic-controlled microfluidic system enabling controlled synthesis of magnetic suspension arrays in multiphase flow networks is realized. The smart and compact system offers a practical solution for the quality administration and screening of encoded magnetic microcarriers and addresses the universal need of process control for synthesis in microfluidic networks, i.e., on-demand creation of droplet templates for high information capacity. The demonstration of magnetic suspension array technology enabled by magnetic in-flow cytometry opens the avenue toward point-of-care multiplexed bead-based assays, clinical diagnostics, and drug discovery. © 2016 The Authors. Published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  17. Quantitative, multiplexed detection of Salmonella and other pathogens by Luminex xMAP suspension array.

    PubMed

    Dunbar, Sherry A; Jacobson, James W

    2007-01-01

    We describe a suspension array hybridization assay for rapid detection and identification of Salmonella and other bacterial pathogens using Luminex xMAP technology. The Luminex xMAP system allows simultaneous detection of up to 100 different targets in a single multiplexed reaction. Included in the method are the procedures for (1) design of species-specific oligonucleotide capture probes and PCR amplification primers, (2) coupling oligonucleotide capture probes to carboxylated microspheres, (3) hybridization of coupled microspheres to oligonucleotide targets, (4) production of targets from DNA samples by PCR amplification, and (5) detection of PCR-amplified targets by direct hybridization to probe-coupled microspheres. The Luminex xMAP suspension array hybridization assay is rapid, requires few sample manipulations, and provides adequate sensitivity and specificity to detect and differentiate Salmonella and nine other test organisms through direct detection of species-specific DNA sequences.

  18. Simultaneous quantitative determination of multiple mycotoxins in cereal and feedstuff samples by a suspension array immunoassay.

    PubMed

    Wang, Yuan-Kai; Yan, Ya-Xian; Li, Shu-Qing; Wang, Heng-An; Ji, Wen-Hui; Sun, Jian-He

    2013-11-20

    Mycotoxins produced by different species of fungi may coexist in single cereal and feedstuff samples, which could become highly toxic for humans and animals. In order to quantify four mycotoxins (zearalenone, fumonisin B1, deoxynivalenol, and aflatoxin B1) in cereal and feedstuff samples simultaneously, a new suspension array immunoassay was developed. Antimycotoxin monoclonal antibodies were conjugated to the surface of different encoding microspheres (19#, 37#, 39#, and 49#), and mycotoxin-protein conjugates were then coupled with biotin. Using streptavidin-phycoerythrin as a signal reporter protein, this direct competition multiple suspension array immunoassay was optimized. The results showed that the detection limits for zearalenone, fumonisin B1, deoxynivalenol, and aflatoxin B1 were 0.51, 6.0, 4.3, and 0.56 ng/mL, respectively, with detection ranges of 0.73-6.8, 11.6-110.3, 8.6-108.1, and 1.1-14.1 ng/mL, respectively. For the detection of the spiked samples, the recovery rates were between 92.3% and 115.5%. This method also shows a good correlation coefficient (r = 0.99, P < 0.01) with liquid chromatography-tandem mass spectrometry in the detection of toxins in commercial cereal and feedstuff samples. This suspension array immunoassay was high-throughput and accurate for the rapid quantitative detection of multiple mycotoxins in commercial cereal and feedstuff samples.

  19. Development of a bead-based suspension array for the detection of pathogens in acute respiratory tract infections

    PubMed Central

    Li, Hong-Ru; Zhang, Wei; Hua, Zhi-Dan; Lin, Xiao-Hong; Lin, Meng-Qing; Huang, Wen-Sen; Huang, Li-Ping; Yu, Xiao-Li; Xu, Neng-Luan; Lin, Ming; Xie, Bao-Song; Shen, Xiao-Na; Xie, Jian-Feng; Wang, Yi; Huang, Meng; Wu, Yan-An; Hu, Xin-Lan

    2016-01-01

    We developed a high-throughput bead-based suspension array for simultaneous detection of 20 respiratory tract pathogens in clinical specimens. Pathogen-specific genes were amplified and hybridized to probes coupled to carboxyl-encoded microspheres. Fluorescence intensities generated via the binding of phycoerythrin-conjugated streptavidin with biotin-labeled targets were measured by the Luminex 100 bead-based suspension array system. The bead-based suspension array detected bacteria in a significantly higher number of samples compared to the conventional culture. There was no significant difference in the detection rate of atypical pathogensatypical pathogens or viruses between the bead-based suspension array and real-time PCR. This technology can play a significant role in screening patients with pneumonia. PMID:27190247

  20. A bead-based suspension array for the multiplexed detection of begomoviruses and their whitefly vectors.

    PubMed

    van Brunschot, S L; Bergervoet, J H W; Pagendam, D E; de Weerdt, M; Geering, A D W; Drenth, A; van der Vlugt, R A A

    2014-03-01

    Bead-based suspension array systems enable simultaneous fluorescence-based identification of multiple nucleic acid targets in a single reaction. This study describes the development of a novel approach to plant virus and vector diagnostics, a multiplexed 7-plex array that comprises a hierarchical set of assays for the simultaneous detection of begomoviruses and Bemisia tabaci, from both plant and whitefly samples. The multiplexed array incorporates genus, species and strain-specific assays, offering a unique approach for identifying both known and unknown viruses and B. tabaci species. When tested against a large panel of sequence-characterized begomovirus and whitefly samples, the array was shown to be 100% specific to the homologous target. Additionally, the multiplexed array was highly sensitive, efficiently and concurrently determining both virus and whitefly identity from single viruliferous whitefly samples. The detection limit for one assay within the multiplexed array that specifically detects Tomato yellow leaf curl virus-Israel (TYLCV-IL) was quantified as 200fg of TYLCV-IL DNA, directly equivalent to that of TYLCV-specific qPCR. Highly reproducible results were obtained over multiple tests. The flexible multiplexed array described in this study has great potential for use in plant quarantine, biosecurity and disease management programs worldwide. Copyright © 2014 Elsevier B.V. All rights reserved.

  1. Comparison of Two Suspension Arrays for Simultaneous Detection of Five Biothreat Bacterial in Powder Samples

    PubMed Central

    Yang, Yu; Wang, Jing; Wen, Haiyan; Liu, Hengchuan

    2012-01-01

    We have developed novel Bio-Plex assays for simultaneous detection of Bacillus anthracis, Yersinia pestis, Brucella spp., Francisella tularensis, and Burkholderia pseudomallei. Universal primers were used to amplify highly conserved region located within the 16S rRNA amplicon, followed by hybridized to pathogen-specific probes for identification of these five organisms. The other assay is based on multiplex PCR to simultaneously amplify five species-specific pathogen identification-targeted regions unique to individual pathogen. Both of the two arrays are validated to be flexible and sensitive for simultaneous detection of bioterrorism bacteria. However, universal primer PCR-based array could not identify Bacillus anthracis, Yersinia pestis, and Brucella spp. at the species level because of the high conservation of 16S rDNA of the same genus. The two suspension arrays can be utilized to detect Bacillus anthracis sterne spore and Yersinia pestis EV76 from mimic “write powder” samples, they also proved that the suspension array system will be valuable tools for diagnosis of bacterial biothreat agents in environmental samples. PMID:22690123

  2. Comparison of two suspension arrays for simultaneous detection of five biothreat bacterial in powder samples.

    PubMed

    Yang, Yu; Wang, Jing; Wen, Haiyan; Liu, Hengchuan

    2012-01-01

    We have developed novel Bio-Plex assays for simultaneous detection of Bacillus anthracis, Yersinia pestis, Brucella spp., Francisella tularensis, and Burkholderia pseudomallei. Universal primers were used to amplify highly conserved region located within the 16S rRNA amplicon, followed by hybridized to pathogen-specific probes for identification of these five organisms. The other assay is based on multiplex PCR to simultaneously amplify five species-specific pathogen identification-targeted regions unique to individual pathogen. Both of the two arrays are validated to be flexible and sensitive for simultaneous detection of bioterrorism bacteria. However, universal primer PCR-based array could not identify Bacillus anthracis, Yersinia pestis, and Brucella spp. at the species level because of the high conservation of 16S rDNA of the same genus. The two suspension arrays can be utilized to detect Bacillus anthracis sterne spore and Yersinia pestis EV76 from mimic "write powder" samples, they also proved that the suspension array system will be valuable tools for diagnosis of bacterial biothreat agents in environmental samples.

  3. Nanoelectrode array for electrochemical analysis

    DOEpatents

    Yelton, William G [Sandia Park, NM; Siegal, Michael P [Albuquerque, NM

    2009-12-01

    A nanoelectrode array comprises a plurality of nanoelectrodes wherein the geometric dimensions of the electrode controls the electrochemical response, and the current density is independent of time. By combining a massive array of nanoelectrodes in parallel, the current signal can be amplified while still retaining the beneficial geometric advantages of nanoelectrodes. Such nanoelectrode arrays can be used in a sensor system for rapid, non-contaminating field analysis. For example, an array of suitably functionalized nanoelectrodes can be incorporated into a small, integrated sensor system that can identify many species rapidly and simultaneously under field conditions in high-resistivity water, without the need for chemical addition to increase conductivity.

  4. Open-loop characteristics of magnetic suspension systems using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Groom, Nelson J.; Britcher, Colin P.

    1992-01-01

    The open-loop characteristics of a Large-Gap Magnetic Suspension System (LGMSS) were studied and numerical results are presented. The LGMSS considered provides five-degree-of-freedom control. The suspended element is a cylinder that contains a core composed of permanent magnet material. The magnetic actuators are air core electromagnets mounted in a planar array. Configurations utilizing five, six, seven, and eight electromagnets were investigated and all configurations were found to be controllable from coil currents and observable from suspended element positions. Results indicate that increasing the number of coils has an insignificant effect on mode shapes and frequencies.

  5. A photonic crystal hydrogel suspension array for the capture of blood cells from whole blood

    NASA Astrophysics Data System (ADS)

    Zhang, Bin; Cai, Yunlang; Shang, Luoran; Wang, Huan; Cheng, Yao; Rong, Fei; Gu, Zhongze; Zhao, Yuanjin

    2016-02-01

    Diagnosing hematological disorders based on the separation and detection of cells in the patient's blood is a significant challenge. We have developed a novel barcode particle-based suspension array that can simultaneously capture and detect multiple types of blood cells. The barcode particles are polyacrylamide (PAAm) hydrogel inverse opal microcarriers with characteristic reflection peak codes that remain stable during cell capture on their surfaces. The hydrophilic PAAm hydrogel scaffolds of the barcode particles can entrap various plasma proteins to capture different cells in the blood, with little damage to captured cells.Diagnosing hematological disorders based on the separation and detection of cells in the patient's blood is a significant challenge. We have developed a novel barcode particle-based suspension array that can simultaneously capture and detect multiple types of blood cells. The barcode particles are polyacrylamide (PAAm) hydrogel inverse opal microcarriers with characteristic reflection peak codes that remain stable during cell capture on their surfaces. The hydrophilic PAAm hydrogel scaffolds of the barcode particles can entrap various plasma proteins to capture different cells in the blood, with little damage to captured cells. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr06368j

  6. Species-specific identification of seven vegetable oils based on suspension bead array.

    PubMed

    Li, Yuanyuan; Wu, Yajun; Han, Jianxun; Wang, Bin; Ge, Yiqiang; Chen, Ying

    2012-03-07

    Species adulteration of vegetable oils has become a main form of adulteration in vegetable oils, severely violating consumer rights and causing disorder in the market. A reliable method of species authentication of vegetable oils is desirable. This paper reports a novel method for identification of seven species of vegetable oils based on suspension bead array. One pair of universal primers and seven species-specific probes were designed targeting rbcl gene of the chloroplast. Each probe was coupled to a unique color-coded microsphere. Biotinylated PCR amplicons of seven oils were hybridized to the complementary probes on microsphere sets. Bound amplicons were detected fluorometrically using a reporter dye, streptavidin-R-phycoeryt hrin (SA-PE). A sample could be analyzed less than 1 h after PCR amplification. With the exception of olive probe, all probes showed no cross-reactivity with other species. Absolute detection limit of the seven probes ranged from 0.01 ng/μL to 0.0001 ng/μL. Detection limit in DNA mixture was from 10% to 5%. Detection of vegetable oils validated the effectiveness of the method. The suspension bead array as a rapid, sensitive, and high-throughput technology has potential to identify more species of vegetable oils with increased species of probes.

  7. Pre-screening of crude peptides in a serological bead-based suspension array.

    PubMed

    Jelsma, Tinka; van der Wal, Fimme J; Fijten, Helmi; Dailly, Nicolas; van Dijk, Evert; Loeffen, Willie L

    2017-09-01

    Most serological assays detect antibody responses in biological samples through affinity of serum antibodies for antigens provided in the assay. Certain antigens, however, may be difficult to produce and/or may contain unwanted epitopes. In these cases, a practical alternative may be the use of peptides as representatives for specific epitopes. Peptides can be obtained after purification in large quantities for a modest price, but screening of a large set of peptides during development may be relatively expensive. To cut costs of screening peptides for a new serological assay, the concept was investigated of using cheap non-purified (crude) peptides instead of purified peptides. Peptides were selected that represent three well-described linear epitopes of viral proteins: VP2 of canine parvovirus (CPV), gp41 of human immunodeficiency virus (HIV) and E2 of classical swine fever virus (CSFV). Crude and purified biotinylated peptides with either a short or long spacer between the biotin and the epitope were used to test their capability to bind antibodies in a bead-based suspension array. The results show that, in a bead-based suspension array, crude peptides can function as antigen for specific monoclonal antibodies, and that the acquired signals are less than with purified peptides. CSFV-derived crude peptides were also able to detect specific antibodies in swine serum, indicating the applicability of crude peptides for pre-screening large numbers of different peptides during the development of serological peptide-based assays. Copyright © 2017. Published by Elsevier B.V.

  8. Implementation of a decoupled controller for a magnetic suspension system using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Cox, D. E.; Groom, N. J.

    1994-01-01

    An implementation of a decoupled, single-input/single-output control approach for a large angle magnetic suspension test fixture is described. Numerical and experimental results are presented. The experimental system is a laboratory model large gap magnetic suspension system which provides five degree-of-freedom control of a cylindrical suspended element. The suspended element contains a core composed of permanent magnet material and is levitated above five electromagnets mounted in a planar array.

  9. Monoclonal antibody selection for interleukin-4 quantification using suspension arrays and forward-phase protein microarrays.

    PubMed

    Wang, L; Cole, K D; Peterson, A; He, Hua-Jun; Gaigalas, A K; Zong, Y

    2007-12-01

    A recombinant mouse interleukin-4 (IL-4) and three different purified rat antimouse IL-4 monoclonal antibodies (Mab) with different clonalities were employed as a model system. This system was used to examine monoclonal antibody effectiveness using both conventional and high-throughput measurement techniques to select antibodies for attaining the most sensitive detection of the recombinant IL-4 through the "sandwich-type" immunoassays. Surface plasmon resonance (SPR) measurements and two high-throughput methods, suspension arrays (also called multiplexed bead arrays) and forward-phase protein microarrays, predicted the same capture (BVD4-1D11) and detection (BVD6-24G2) antibody pair for the most sensitive detection of the recombinant cytokine. By using this antibody pair, we were able to detect as low as 2 pg/mL of IL-4 in buffer solution and 13.5 pg/mL of IL-4 spiked in 100% normal mouse serum with the multiplexed bead arrays. Due to the large amount of material required for SPR measurements, the study suggests that the multiplexed bead arrays and protein microarrays are both suited for the selection of numerous antibodies against the same analyte of interest to meet the need in the areas of systems biology and reproducible clinical diagnostics for better patient care.

  10. Optical analysis of red blood cell suspension

    NASA Astrophysics Data System (ADS)

    Szołna, Alicja A.; Grzegorzewski, Bronisław

    2008-12-01

    The optical properties of suspensions of red blood cells (RBCs) were studied. Fresh human venues blood was obtained from adult healthy donors. RBCs were suspended in isotonic salt solution, and in autologous plasma. Suspensions with haematocrit 0.25 - 3% were investigated. Novel technique was proposed to determine the scattering coefficient μs for the suspensions. The intensity of He-Ne laser light transmitted through a wedge-shape container filled with a suspension was recorded. To find the dependence of the intensity on the thickness of the sample the container was moved horizontally. The dependence of μs on the haematocrit was determined for RBCs suspended in the isotonic salt solution. RBCs suspended in plasma tend to form rouleaux. For the RBCs suspended in plasma, the scattering coefficient as a function of time was obtained. It is shown that this technique can be useful in the study of rouleaux formation.

  11. Rapid, Multiplexed Characterization of Shiga Toxin-Producing Escherichia coli (STEC) Isolates Using Suspension Array Technology

    PubMed Central

    Carter, John M.; Lin, Andrew; Clotilde, Laurie; Lesho, Matthew

    2016-01-01

    Molecular methods have emerged as the most reliable techniques to detect and characterize pathogenic Escherichia coli. These molecular techniques include conventional single analyte and multiplex PCR, PCR followed by microarray detection, pulsed-field gel electrophoresis (PFGE), and whole genome sequencing. The choice of methods used depends upon the specific needs of the particular study. One versatile method involves detecting serogroup-specific markers by hybridization or binding to encoded microbeads in a suspension array. This molecular serotyping method has been developed and adopted for investigating E. coli outbreaks. The major advantages of this technique are the ability to simultaneously serotype E. coli and detect the presence of virulence and pathogenicity markers. Here, we describe the development of a family of multiplex molecular serotyping methods for Shiga toxin-producing E. coli, compare their performance to traditional serotyping methods, and discuss the cost-benefit balance of these methods in the context of various food safety objectives. PMID:27242670

  12. Geometrical analysis of suspension flows near jamming

    NASA Astrophysics Data System (ADS)

    Wyart, Matthieu

    2012-02-01

    The viscosity of suspensions was computed early on by Einstein and Batchelor in the dilute regime. At high density however, their rheology remains mystifying. As the packing fraction increases, steric hindrance becomes dominant and particles move under stress in a more and more coordinated way. Eventually, the viscosity diverges as the suspension jams into an amorphous solid. Such a jamming transition is reminiscent of critical points: the rheology displays scaling and a diverging length scale. Jamming bear similarities with the glass transition where steric hindrance is enhanced under cooling, and where the dynamics is also observed to become more and more collective as it slows down. In all these examples, understanding the nature of the collective dynamics and the associated rheology remains a challenge. Recent progress has been made however on a related problem, the unjamming transition where a solid made of repulsive soft particles is isotropically decompressed toward vanishing pressure. In this situation various properties of the amorphous solid, such as elasticity, transport or force propagation, display scaling with the distance to threshold. Theoretically these observations can be shown to stem from the presence of soft modes in the vibrational spectrum, a result that can be extended to thermal colloidal glasses as well. Here we focus on particles driven by shear at zero temperature. We show that if hydrodynamical interactions are neglected an analogy can be made between the rheology of such a suspension and the elasticity of simple networks, building a link between the jamming and the unjamming transition. This analogy enables us to unify in a common framework key aspects of the elasticity of amorphous solids with the rheology of dense suspensions, and to relate features of the latter to the geometry of configurations visited under flow.

  13. Analysis of Train Suspension System Using MR dampers

    NASA Astrophysics Data System (ADS)

    RamaSastry, DVA; Ramana, K. V.; Mohan Rao, N.; Siva Kumar, SVR; Priyanka, T. G. L.

    2016-09-01

    This paper deals with introducing MR dampers to the Train Suspension System for improving the ride comfort of the passengers. This type of suspension system comes under Semi-active suspension system which utilizes the properties of MR fluid to damp the vibrations. In case of high speed trains, the coach body is subjected to vibrations due to vertical displacement, yaw and pitch movements. When the body receives these disturbances from the ground,the transmission of vibrations to the passenger increases which affect the ride comfort. In this work, the equations of motion of suspension system are developed for both conventional passive system and semi-active system and are modelled in Matlab/Simulink and analysis has been carried out. The passive suspension system analysis shows that it is taking more time to damp the vibrations and at the same time the transmissibility of vibrations is more.Introducing MR dampers,vertical and angular displacements of the body are computed and compared. The results show that the introduction of MR dampers into the train suspension system improves ride comfort.

  14. [Clinical validation of multiple biomarkers suspension array technology for ovarian cancer].

    PubMed

    Zhao, B B; Yang, Z J; Wang, Q; Pan, Z M; Zhang, W; Li, L

    2017-01-25

    Objective: To investigates the diagnostic value of combined detection serum CCL18, CXCL1 antigen, C1D, TM4SF1, FXR1, TIZ IgG autoantibody by suspension array for ovarian cancer. Methods: Suspension array was used to detect CCL18, CXCL1 antigen, C1D, TM4SF1, FXR1, TIZ IgG autoantibody in 120 cases of healthy women, 204 cases of patients with benign pelvic tumors, 119 cases of pelvic malignant tumor patients, and 40 cases with breast cancer, lung cancer oroliver cancer, respectively. Constructed diagnosis model of combined detection six biomarkers for diagnosis of ovarian malignant tumor. Constructed diagnosis model of combined detection autoantibodies to diagnose epithelial ovarian cancer. Analysed the value of detecting six biomarkers for diagnosis of ovarian malignant tumor and detecting autoantibodies for diagnosis of epithelial ovarian cancer. Analysed diagnostic value of detecting six biomarkers to diagnose stage Ⅰ and Ⅱepithelial ovarian cancer. Compared diagnostic value of detecting six biomarkers in diagnosis of tissue types and pathologic grading with that of CA(125). Results: Model of combined detecting six biomarkers to diagnose ovarian malignant tumor was logit (P) =-11.151+0.008×C1D+0.011×TM4SF1+0.011×TIZ-0.008×FXR1+0.021×CCL18+0.200×CXCL1. Model of combined detection autoantibodies to diagnose epithelial ovarian cancer was logit (P) =-5.137+0.013×C1D+0.014×TM4SF1+0.060×TIZ-0.060×FXR1. Sensitivity and specificity of detecting six biomarker to diagnose ovarian malignant tumor was 90.6% and 98.7%. Sensitivity and specificity of detecting autoantibodies to diagnose epithelial ovarian cancer was 75.8% and 96.7%. Combined detection for six biomarkers to diagnose serous and mucinous ovarian cancer was statistically no better than those of CA(125) (P=0.196 and P=0.602, respectively); there was significantly difference in diagnosis of ovarian cancer (P=0.023), and there was no significantly difference in diagnosis of different pathological grading

  15. Collision rates for rare cell capture in periodic obstacle arrays strongly depend on density of cell suspension.

    PubMed

    Cimrák, I

    2016-11-01

    Recently, computational modelling has been successfully used for determination of collision rates for rare cell capture in periodic obstacle arrays. The models were based on particle advection simulations where the cells were advected according to velocity field computed from two dimensional Navier-Stokes equations. This approach may be used under the assumption of very dilute cell suspensions where no mutual cell collisions occur. We use the object-in-fluid framework to demonstrate that even with low cell-to-fluid ratio, the optimal geometry of the obstacle array significantly changes. We show computational simulations for ratios of 3.5, 6.9 and 10.4% determining the optimal geometry of the periodic obstacle arrays. It was already previously demonstrated that cells in periodic obstacle arrays follow trajectories in two modes: the colliding mode and the zig-zag mode. The colliding mode maximizes the cell-obstacle collision frequency. Our simulations reveal that for dilute suspensions and for suspensions with cell-to-fluid ratio 3.5%, there is a range of column shifts for which the cells follow colliding trajectories. However we showed, that for 6.9 and 10.4%, the cells never follow colliding trajectories.

  16. Multiplex detection of B-type natriuretic peptide, cardiac troponin I and C-reactive protein with photonic suspension array.

    PubMed

    Lu, Wenbin; Fu, Cong; Chen, Yong; Lu, Jun; Yao, Yuyu; Shen, Chengxing; Gu, Zhongze

    2012-01-01

    A novel photonic suspension array has been developed for multiplex immunoassay. The carriers of this array were silica colloidal crystal beads (SCCBs). The codes of these carriers have characteristic reflection peaks originating from their structural periodicity; therefore they do not suffer from fading, bleaching, quenching or chemical instability. In addition, the fluorescence background of SCCBs is negligible because no fluorescence materials or dyes are involved. With a sandwich method, the proposed suspension array was used for simultaneous multiplex detection of heart failure (HF) and coronary heart disease (CAD) biomarkers in one test tube. The results showed that the three biomarkers: cardiac troponin I (cTnI), C-reactive protein (CRP) and B-type natriuretic peptide (BNP) could be assayed in the ranges of 0.1-500 ng/ml, 1-500 mg/L and 0.02-50 ng/ml with detection limits of 0.01 ng/ml, 0.36 mg/L and 0.004 ng/ml at 3σ, respectively. There were no significant differences between the photonic suspension array and traditional parallel single-analyte test. This novel method demonstrated acceptable accuracy, high detection sensitivity and reproducibility and excellent storage stability. This technique provides a new strategy for low cost, automated, and simultaneous multiplex immunoassays of bio-markers.

  17. High sensitive immunoassay for multiplex mycotoxin detection with photonic crystal microsphere suspension array.

    PubMed

    Deng, Guozhe; Xu, Kun; Sun, Yue; Chen, Yu; Zheng, Tiesong; Li, Jianlin

    2013-03-05

    A novel, sensitive, and high throughput competitive immunoassay for multiplex mycotoxins was established by immobilizing the artificial antigens (Ags) of mycotoxins on the surfaces of three kinds of silica photonic crystal microsphere (SPCM) suspension arrays. The SPCMs were encoded by their reflectance peak positions. Aflatoxin B1 (AFB1), fumonisin B1 (FB1), and citrinin (CIT) spiked in the cereals were extracted, and the fluorescein isothiocyanate (FITC) labeled antibodies (Abs) of these mycotoxins were added into the centrifuge tube which contained the SPCMs of the modified artificial antigens (Ags). The fluorescence signal was collected by an array fluorescent scanner. The limit of detection (LOD) was as low as 0.5, 1, and 0.8 pg/mL for AFB1, FB1, and CIT, respectively. The new method provided a wide linear detection range from 0.001 to 10, 0.001 to 10, and 0.001 to 1 ng/mL for AFB1, FB1, and CIT, respectively. The mean recovery rates are in range of 74.7 ± 4.0% to 127.9 ± 4.4% for the three mycotoxins in corn, peanuts, and wheat. The developed method for mycotoxins was used to assay the AFB1, FB1, and CIT level in 10 naturally contaminated cereal samples, and the results of detection were in agreement with that of a classic enzyme-linked immunosorbent assay (ELISA) method. This method saves a large amount of reagents (10 μL volume) and detection time (<3 h) for multiplex mycotoxin assay.

  18. Analysis of phased-array diode lasers

    SciTech Connect

    Hardy, A.; Streifer, W.

    1985-07-01

    An improved, more accurate analysis of phased-array diode lasers is presented, which yields results that differ both qualitatively and quantitatively from those previously employed. A numerical example indicating decreased splitting in array mode gains is included.

  19. Application of a multiplex suspension array for rapid and simultaneous identification of clinically important mold pathogens.

    PubMed

    Liao, Mei-Hui; Lin, Jeng-Fong; Li, Shu-Ying

    2012-10-01

    We have developed a microsphere-based suspension array (MSA) for the identification of 23 medically important mold pathogens including Aspergillus spp., Fusarium spp., Mucor spp., Rhizopus spp., Rhizomucor pusillus, Penicillium marneffei, Saksenaea vasiformis, Apophysomyces elegans, Lichtheimia corymbifer, and Syncephalastrum racemosum. Twenty-one oligonucleotide probes were designed based on the internal transcribed spacer (ITS2) region for species level identification of molds. Among the 21 probes, 2 probes are shared by more than one species due to low or absence of sequence variability, i.e. Rpam for Rhizopus azygosporus/Rhizopus microsporus and Fumop for Fusarium moniliforme/Fusarium oxysporum/Fusarium pallidoroseum. No cross reactivity was identified except for probes of Mucor racemosus (Murac) which cross react with Mucor hiemalis and Mucor ramosissimus. The sensitivity of MSA is 100 fg-1 ng. The whole procedure including DNA extraction and PCR amplification can be finished within 5 h. The MSA is simple, rapid, specific, high-throughput and capable of multiple-species detection in one reaction tube. Copyright © 2012 Elsevier Ltd. All rights reserved.

  20. Roll- and pitch-plane coupled hydro-pneumatic suspension. Part 1: Feasibility analysis and suspension properties

    NASA Astrophysics Data System (ADS)

    Cao, Dongpu; Rakheja, Subhash; Su, Chun-Yi

    2010-03-01

    Passive fluidically coupled suspensions have been considered to offer a promising alternative solution to the challenging design of a vehicle suspension system. A theoretical foundation, however, has not been established for fluidically coupled suspension to facilitate its broad applications to various vehicles. The first part of this study investigates the fundamental issues related to feasibility and properties of the passive, full-vehicle interconnected, hydro-pneumatic suspension configurations using both analytical and simulation techniques. Layouts of various interconnected suspension configurations are illustrated based on two novel hydro-pneumatic suspension strut designs, both of which provide a compact design with a considerably large effective working area. A simplified measure, vehicle property index, is proposed to permit a preliminary evaluation of different interconnected suspension configurations using qualitative scaling of the bounce-, roll-, pitch- and warp-mode stiffness properties. Analytical formulations for the properties of unconnected and three selected X-coupled suspension configurations are derived, and simulation results are obtained to illustrate their relative stiffness and damping properties in the bounce, roll, pitch and warp modes. The superior design flexibility feature of the interconnected hydro-pneumatic suspension is also discussed through sensitivity analysis of a design parameter, namely the annular piston area of the strut. The results demonstrate that a full-vehicle interconnected hydro-pneumatic suspension could provide enhanced roll- and pitch-mode stiffness and damping, while retaining the soft bounce- and warp-mode properties. Such an interconnected suspension thus offers considerable potential in realising enhanced decoupling among the different suspension modes.

  1. Extensive screening system using suspension array technology to detect mitochondrial DNA point mutations.

    PubMed

    Nishigaki, Yutaka; Ueno, Hitomi; Coku, Jorida; Koga, Yasutoshi; Fujii, Tatsuya; Sahashi, Ko; Nakano, Kazutoshi; Yoneda, Makoto; Nonaka, Michiko; Tang, Linya; Liou, Chia-Wei; Paquis-Flucklinger, Veronique; Harigaya, Yasuo; Ibi, Tohru; Goto, Yu-ichi; Hosoya, Hiroko; DiMauro, Salvatore; Hirano, Michio; Tanaka, Masashi

    2010-04-01

    We established an extensive and rapid system using suspension array to detect 61 representative mitochondrial DNA (mtDNA) heteroplasmic or homoplasmic point mutations (29 for Series A and 32 for Series B) in 22 genes: 1 each in MT-RNR1, -TV, -ND1, -TQ, -TW, -TC, and -TH genes; 2 each in MT-TN, -TG, -ND4, -TL2, -TE, and -CYB genes; 3 each in MT-ATP6, -ND3, and -ND5 genes; 4 each in MT-CO1 and -TK genes; 5 each in MT-TI, -TS1, and -ND6 genes; and 10 in the MT-TL1 gene. We carefully selected 5'-biotinylated primers and pooled primers for use in two sets of multiplex-PCR amplifications. To detect both mutant and wild-type mtDNA, even when polymorphisms were present near the target mutation sites, we designed specific oligonucleotide probes. By using the mtDNA point mutation detection system of Series A (29 mutations) and Series B (32 mutations), we screened a total of 3103 mutant sites in 107 DNA samples for Series A and 13,101 mutant sites in 397 DNA samples for Series B. We succeeded in determining 99.4% (Series A) and 99.6% (Series B) of the targeted mutant sites by use of the system. The 22 samples with the m.3243A>G heteroplasmic mutation revealed positive signals with both mutant- and wild-type-specific probes in this detection system with a detection limit of approximately 2%. This genetic screening platform is useful to reach a definitive diagnosis for mitochondrial diseases. Copyright 2010 Mitochondria Research Society. Published by Elsevier B.V. All rights reserved.

  2. US Marine Corps assault amphibious vehicle suspension system analysis

    SciTech Connect

    Hammonds, C.J.; Jones, J.K.; Mayhall, J.A.; Williamson, D.E.

    1988-11-01

    In response to a request from the US Marine Corps (USMC), the Oak Ridge National Laboratory investigated a problem with the suspension system of the assault amphibious vehicle (AAV), Personnel Model 7A1. In the course of the investigation, drawings of the AAV and field survey data on bearing failures provided by VSE Corporation were used. The analysis approach taken was to model the suspension system and the vehicle hull and support structure using finite element techniques. This provided stress and deflection information for the system. To determine the loads imparted to the system as the AAV traversed terrain features, a dynamics model was developed to provide loads to the finite element analysis (FEA). Because the primary indication of a problem was frequent suspension-system bearing failure, an analysis of the suspension-system bearings was conducted. Finally, to check the accuracy of the models and to provide actual load data for bearing analysis, an instrumented AAV was tested over a surveyed course at Camp Pendleton, California. Initially the dynamics model assumed the interface between the hull and the suspension system to be fixed. Later improvements incorporating the flexibility of the vehicle hull into the analysis by linking the two models resulted in improved accuracy. Actual measurements of the front road-arm displacement and vertical acceleration of the chassis are compared with predictions from the model. The correlation is quite good and indicates that the model can accurately predict the dynamic load on each road wheel for input into finite element analyses. The dynamics model can be expanded to study the effects of adding weight to the vehicle, traversing other terrains, or evaluating inputs such as weapons firing or drop tests. 7 refs., 75 figs., 10 tabs.

  3. Characterization of microrod arrays by image analysis

    NASA Astrophysics Data System (ADS)

    Hillebrand, Reinald; Grimm, Silko; Giesa, Reiner; Schmidt, Hans-Werner; Mathwig, Klaus; Gösele, Ulrich; Steinhart, Martin

    2009-04-01

    The uniformity of the properties of array elements was evaluated by statistical analysis of microscopic images of array structures, assuming that the brightness of the array elements correlates quantitatively or qualitatively with a microscopically probed quantity. Derivatives and autocorrelation functions of cumulative frequency distributions of the object brightnesses were used to quantify variations in object properties throughout arrays. Thus, different specimens, the same specimen at different stages of its fabrication or use, and different imaging conditions can be compared systematically. As an example, we analyzed scanning electron micrographs of microrod arrays and calculated the percentage of broken microrods.

  4. Development of a Multiplexed Bead-Based Suspension Array for the Detection and Discrimination of Pospiviroid Plant Pathogens

    PubMed Central

    van Brunschot, Sharon L.; Bergervoet, Jan H. W.; Pagendam, Daniel E.; de Weerdt, Marjanne; Geering, Andrew D. W.; Drenth, André; van der Vlugt, René A. A.

    2014-01-01

    Efficient and reliable diagnostic tools for the routine indexing and certification of clean propagating material are essential for the management of pospiviroid diseases in horticultural crops. This study describes the development of a true multiplexed diagnostic method for the detection and identification of all nine currently recognized pospiviroid species in one assay using Luminex bead-based suspension array technology. In addition, a new data-driven, statistical method is presented for establishing thresholds for positivity for individual assays within multiplexed arrays. When applied to the multiplexed array data generated in this study, the new method was shown to have better control of false positives and false negative results than two other commonly used approaches for setting thresholds. The 11-plex Luminex MagPlex-TAG pospiviroid array described here has a unique hierarchical assay design, incorporating a near-universal assay in addition to nine species-specific assays, and a co-amplified plant internal control assay for quality assurance purposes. All assays of the multiplexed array were shown to be 100% specific, sensitive and reproducible. The multiplexed array described herein is robust, easy to use, displays unambiguous results and has strong potential for use in routine pospiviroid indexing to improve disease management strategies. PMID:24404188

  5. Extraction and Analysis of C60, C70 and PCBM in Aqueous Suspensions

    EPA Science Inventory

    The goal of this work is to develop sampling and analytical methodologies for extracting and quantifying fullerenes in aqueous colloidal suspensions. Sampling and analysis of colloidal suspensions pose some unique challenges not encountered when working with true solutions. For...

  6. Rapid Identification of Shiga Toxin-Producing Escherichia coli O Serogroups from Fresh Produce and Raw Milk Enrichment Cultures by Luminex Bead-Based Suspension Array.

    PubMed

    Kase, Julie A; Maounounen-Laasri, Anna; Lin, Andrew

    2016-09-01

    The U.S. Food and Drug Administration's Bacteriological Analytical Manual (BAM) Chapter 4a describes a Luminex microbead-based suspension array used to screen colonies for 11 clinically relevant Shiga toxin-producing Escherichia coli (STEC) serogroups: O26, O45, O91, O103, O104, O111, O113, O121, O128, O145, and O157. We evaluated the usefulness of this method to identify STEC-positive enrichment samples before agar plating. Twelve E. coli strains were added to three types of fresh produce (bagged baby spinach, alfalfa sprouts, and cilantro) at levels near the detection limit of the test. A subset of these strains (six O serogroups) was similarly evaluated in raw milk. For comparison, portions of each of the 168 enrichment cultures were analyzed for serogroup by a real-time PCR assay and a Bio-Plex 200 assay with the bead-based suspensions. No false-positive results were obtained. Of the 112 samples with a reported cycle threshold (CT) value, 101 undiluted, diluted, or extracted enrichment cultures also produced ratios above 5.0 in the Bio-Plex assay. When PCR CT values approached or were greater than 35, Bio-Plex detection became less reliable. Using undiluted or extracted enrichment cultures resulted in a significantly larger number of positive results. With the same enrichment material prepared for real-time PCR analysis as described in the BAM Chapter 4a, the STEC microbead-based suspension array can accurately screen food enrichment cultures.

  7. Stability considerations for magnetic suspension systems using electromagnets mounted in a planar array

    NASA Technical Reports Server (NTRS)

    Groom, Nelson J.; Britcher, Colin P.

    1991-01-01

    Mathematical models of a 5, 6, 7, and 8 coil large gap magnetic suspension system (MSDS) are presented. Some of the topics covered include: force and torque equations, reduction of state-space form, natural modes, origins of modes, effect of rotation in azimuth (yaw), future work, and n-coil ring conclusions.

  8. Design and analysis of an intelligent controller for active geometry suspension systems

    NASA Astrophysics Data System (ADS)

    Goodarzi, Avesta; Oloomi, Ehsan; Esmailzadeh, Ebrahim

    2011-02-01

    An active geometry suspension (AGS) system is a device to optimise suspension-related factors such as toe angle and roll centre height by controlling vehicle's suspension geometry. The suspension geometry could be changed through control of suspension mounting point's position. In this paper, analysis and control of an AGS system is addressed. First, the effects of suspension geometry change on roll centre height and toe angle are studied. Then, based on an analytical approach, the improvement of the vehicle's stability and handling due to the control of suspension geometry is investigated. In the next section, an eight-degree-of-freedom handling model of a sport utility vehicle equipped with an AGS system is introduced. Finally, a self-tuning proportional-integral controller has been designed, using the fuzzy control theory, to control the actuator that changes the geometry of the suspension system. The simulation results show that an AGS system can improve the handling and stability of the vehicle.

  9. Hydraulically interconnected vehicle suspension: theoretical and experimental ride analysis

    NASA Astrophysics Data System (ADS)

    Smith, Wade A.; Zhang, Nong; Jeyakumaran, Jeku

    2010-01-01

    In this paper, a previously derived model for the frequency-domain analysis of vehicles with hydraulically interconnected suspension (HIS) systems is applied to the ride analysis of a four-degrees of freedom roll-plane, half-car under a rough road input. The entire road surface is assumed to be a realisation of a two-dimensional Gaussian homogenous and isotropic random process. The frequency responses of the half-car, in terms of bounce and roll acceleration, suspension deflection and dynamic tyre forces, are obtained under the road input of a single profile represented by its power spectral density function. Simulation results obtained for the roll-plane half-car fitted with an HIS and those with conventional suspensions are compared in detail. In addition, sensitivity analysis of key parameters of the HIS to the ride performance is carried out through simulations. The paper also presents the experimental validation of the analytical results of the free and forced vibrations of the roll-plane half-car. The hydraulic and mechanical system layouts, data acquisition system and the external force actuation mechanism of the test set-up are described in detail. The methodology for free and forced vibration tests and the application of mathematical models to account for the effective damper valve pressure loss are explained. Results are provided for the free and forced vibration testing of the half-car with different mean operating pressures. Comparisons are also given between the test results and those obtained from the system model with estimated damper valve loss coefficients. Furthermore, discussions on the deficiencies and practical implications of the proposed model and suggestions for future investigation are provided. Finally, the key findings of the investigation on the ride performance of the roll-plane half-car are summarised.

  10. Structural analysis of compression helical spring used in suspension system

    NASA Astrophysics Data System (ADS)

    Jain, Akshat; Misra, Sheelam; Jindal, Arun; Lakhian, Prateek

    2017-07-01

    The main aim of this work has to develop a helical spring for shock absorber used in suspension system which is designed to reduce shock impulse and liberate kinetic energy. In a vehicle, it increases comfort by decreasing amplitude of disturbances and it improves ride quality by absorbing and dissipating energy. When a vehicle is in motion on a road and strikes a bump, spring comes into action quickly. After compression, spring will attempt to come to its equilibrium state which is on level road. Helical springs can be made lighter with more strength by reducing number of coils and increasing the area. In this research work, a helical spring is modeled and analyzed to substitute the existing steel spring which is used in suspension. By using different materials, stress and deflection of helical spring can be varied. Comparability between existing spring and newly replaced spring is used to verify the results. For finding detailed stress distribution, finite element analysis is used to find stresses and deflection in both the helical springs. Finite element analysis is a method which is used to find proximate solutions of a physical problem defined in a finite domain. In this research work, modeling of spring is accomplished using Solid Works and analysis on Ansys.

  11. Modeling and analysis of electrorheological suspensions in shear flow.

    PubMed

    Seo, Youngwook P; Seo, Yongsok

    2012-02-14

    A model capable of describing the flow behavior of electrorheological (ER) suspensions under different electric field strengths and over the full range of shear rates is proposed. Structural reformation in the low shear rate region is investigated where parts of a material are in an undeformed state, while aligned structures reform under the shear force. The model's predictions were compared with the experimental data of some ER fluids as well as the CCJ (Cho-Choi-Jhon) model. This simple model's predictions of suspension flow behavior with subsequent aligned structure reformation agreed well with the experimental data, both quantitatively and qualitatively. The proposed model plausibly predicted the static yield stress, whereas the CCJ model and the Bingham model predicted only the dynamic yield stress. The master curve describing the apparent viscosity was obtained by appropriate scaling both axes, which showed that a combination of dimensional analysis and flow curve analysis using the proposed model yielded a quantitatively and qualitatively precise description of ER fluid rheological behavior based on relatively few experimental measurements.

  12. Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis

    PubMed Central

    Scaria, Joy; Sreedharan, Aswathy; Chang, Yung-Fu

    2008-01-01

    Background Microarrays are becoming a very popular tool for microbial detection and diagnostics. Although these diagnostic arrays are much simpler when compared to the traditional transcriptome arrays, due to the high throughput nature of the arrays, the data analysis requirements still form a bottle neck for the widespread use of these diagnostic arrays. Hence we developed a new online data sharing and analysis environment customised for diagnostic arrays. Methods Microbial Diagnostic Array Workstation (MDAW) is a database driven application designed in MS Access and front end designed in ASP.NET. Conclusion MDAW is a new resource that is customised for the data analysis requirements for microbial diagnostic arrays. PMID:18811969

  13. Microbial Diagnostic Array Workstation (MDAW): a web server for diagnostic array data storage, sharing and analysis.

    PubMed

    Scaria, Joy; Sreedharan, Aswathy; Chang, Yung-Fu

    2008-09-23

    Microarrays are becoming a very popular tool for microbial detection and diagnostics. Although these diagnostic arrays are much simpler when compared to the traditional transcriptome arrays, due to the high throughput nature of the arrays, the data analysis requirements still form a bottle neck for the widespread use of these diagnostic arrays. Hence we developed a new online data sharing and analysis environment customised for diagnostic arrays. Microbial Diagnostic Array Workstation (MDAW) is a database driven application designed in MS Access and front end designed in ASP.NET. MDAW is a new resource that is customised for the data analysis requirements for microbial diagnostic arrays.

  14. Seismic vertical array analysis for phase decomposition

    NASA Astrophysics Data System (ADS)

    Yoshida, Kunikazu; Sasatani, Tsutomu

    2008-08-01

    We propose a vertical array analysis method that decomposes complex seismograms into body and surface wave time histories by using a velocity structure at the vertical array site. We assume that the vertical array records are the sum of vertically incident plane P and S waves, and laterally incident Love and Rayleigh waves. Each phase at the surface is related to that at a certain depth by the transfer function in the frequency domain; the transfer function is obtained by Haskell's matrix method, assuming a 1-D velocity structure. Decomposed P, S and surface waves at the surface are estimated from the vertical array records and the transfer functions by using a least-squares method in the frequency domain; their time histories are obtained by the inverse Fourier transform. We carried out numerical tests of this method based on synthetic vertical array records consisting of vertically incident plane P and S waves and laterally incident plane Love and Rayleigh waves. Perfect results of the decomposed P, S, Love and Rayleigh waves were obtained for synthetic records without noise. A test of the synthetic records in which a small amount of white noise was added yielded a reasonable result for the decomposed P, S and surface waves. We applied this method to real vertical array records from the Ashigara valley, a moderate-sized sedimentary valley. The array records from two earthquakes occurring at depths of 123 and 148 km near the array (epicentral distance of about 31 km) exhibited long-duration later phases. The analysis showed that duration of the decomposed S waves was a few seconds and that the decomposed surface waves appeared a few seconds after the direct S-wave arrival and had very long duration. This result indicated that the long-duration later phases were generated not by multireflected S waves, but by basin-induced surface waves.

  15. Fault Analysis in Solar Photovoltaic Arrays

    NASA Astrophysics Data System (ADS)

    Zhao, Ye

    Fault analysis in solar photovoltaic (PV) arrays is a fundamental task to increase reliability, efficiency and safety in PV systems. Conventional fault protection methods usually add fuses or circuit breakers in series with PV components. But these protection devices are only able to clear faults and isolate faulty circuits if they carry a large fault current. However, this research shows that faults in PV arrays may not be cleared by fuses under some fault scenarios, due to the current-limiting nature and non-linear output characteristics of PV arrays. First, this thesis introduces new simulation and analytic models that are suitable for fault analysis in PV arrays. Based on the simulation environment, this thesis studies a variety of typical faults in PV arrays, such as ground faults, line-line faults, and mismatch faults. The effect of a maximum power point tracker on fault current is discussed and shown to, at times, prevent the fault current protection devices to trip. A small-scale experimental PV benchmark system has been developed in Northeastern University to further validate the simulation conclusions. Additionally, this thesis examines two types of unique faults found in a PV array that have not been studied in the literature. One is a fault that occurs under low irradiance condition. The other is a fault evolution in a PV array during night-to-day transition. Our simulation and experimental results show that overcurrent protection devices are unable to clear the fault under "low irradiance" and "night-to-day transition". However, the overcurrent protection devices may work properly when the same PV fault occurs in daylight. As a result, a fault under "low irradiance" and "night-to-day transition" might be hidden in the PV array and become a potential hazard for system efficiency and reliability.

  16. Electrochemical analysis in a liposome suspension using lapachol as a hydrophobic electro active species.

    PubMed

    Okumura, Noriko; Wakamatsu, Shiori; Uno, Bunji

    2014-01-01

    This study demonstrated that the electro-chemical analysis of hydrophobic quinones can be performed in liposome suspension systems. We prepared and analyzed liposome suspensions containing lapachol, which is a quinone-based anti-tumor activity compound. In this suspension system, a simple one redox couple of lapachol is observed. These results are quite different from those obtained in organic solvents. In addition, the pH dependence of redox behaviors of lapachol could be observed in multilamellar vesicle (MLV) suspension system. This MLV suspension system method may approximate the electrochemical behavior of hydrophobic compounds in aqueous conditions. A benefit of this liposome suspension system for electrochemical analysis is that it enables to observe water-insoluble compounds without using organic solvents.

  17. Colorimetric sensor array for soft drink analysis.

    PubMed

    Zhang, Chen; Suslick, Kenneth S

    2007-01-24

    Fourteen commercial soft drinks have been analyzed using colorimetric sensor arrays made from a set of 25 chemically responsive dyes printed on a hydrophobic membrane. Digital imaging of the dye array before and after immersion provides a color change profile as a unique fingerprint for each specific analyte. The digital data library generated was analyzed with statistical and chemometric methods, including principal component analysis (PCA) and hierarchical clustering analysis (HCA). Facile identification of all of the soft drinks was readily achieved using comparison of the color change profiles or a PCA score plot. Using a HCA dendrogram, the misclassification rate was <2%, and even very similar sodas were easily differentiated. In addition, the monitoring of soft drinks as they degas or upon dilution also proved to be possible. This work demonstrates the potential of our colorimetric sensor array technology for quality assurance/control applications of sodas and perhaps other beverages as well.

  18. Accurate Analysis of Array References

    DTIC Science & Technology

    1992-09-22

    This thesis addresses the problem of data dependence analysis, the base step in detecting loop level parallelism in scientific programs. Traditional...data dependence analysis research has concentrated on the simpler problem of affine memory disambiguation. Many algorithms have been developed that...can devise an experiment to test the effectiveness of affine memory disambiguation at approximating the full dependence problem. We discover that the

  19. Application of time-frequency analysis to the evaluation of the condition of car suspension

    NASA Astrophysics Data System (ADS)

    Szymański, G. M.; Josko, M.; Tomaszewski, F.; Filipiak, R.

    2015-06-01

    The article presents possibilities of use of vibration signal parameters for the evaluation of elements' clearance in the car suspension system. The time-spectrum analysis has been proposed to determine the frequency band connected with car body free vibration generated by impacts of suspension elements in case of clearance in suspension elements fixing to the car body. Diagnostic models allowing evaluation of shock absorber fastening to the car body are described in this work.

  20. An Analysis of the Mt. Meron Seismic Array

    SciTech Connect

    Pasyanos, M E; Ryall, F

    2008-01-10

    We have performed a quick analysis of the Mt. Meron seismic array to monitor regional seismic events in the Middle East. The Meron array is the only current array in the Levant and Arabian Peninsula and, as such, might be useful in contributing to event location, identification, and other analysis. Here, we provide a brief description of the array and a review of the travel time and array analysis done to assess its performance.

  1. Relationship between School Suspension and Student Outcomes: A Meta-Analysis

    ERIC Educational Resources Information Center

    Noltemeyer, Amity L.; Ward, Rose Marie; Mcloughlin, Caven

    2015-01-01

    Although the association between school suspension and deleterious outcomes is widely acknowledged, policy and practice need to be informed by an evidence base derived from multiple studies revealing consistent trends. This meta-analysis aims to address this void by examining the degree to which different types of school suspensions (in-school…

  2. Performance Analysis of ICA in Sensor Array

    PubMed Central

    Cai, Xin; Wang, Xiang; Huang, Zhitao; Wang, Fenghua

    2016-01-01

    As the best-known scheme in the field of Blind Source Separation (BSS), Independent Component Analysis (ICA) has been intensively used in various domains, including biomedical and acoustics applications, cooperative or non-cooperative communication, etc. While sensor arrays are involved in most of the applications, the influence on the performance of ICA of practical factors therein has not been sufficiently investigated yet. In this manuscript, the issue is researched by taking the typical antenna array as an illustrative example. Factors taken into consideration include the environment noise level, the properties of the array and that of the radiators. We analyze the analytic relationship between the noise variance, the source variance, the condition number of the mixing matrix and the optimal signal to interference-plus-noise ratio, as well as the relationship between the singularity of the mixing matrix and practical factors concerned. The situations where the mixing process turns (nearly) singular have been paid special attention to, since such circumstances are critical in applications. Results and conclusions obtained should be instructive when applying ICA algorithms on mixtures from sensor arrays. Moreover, an effective countermeasure against the cases of singular mixtures has been proposed, on the basis of previous analysis. Experiments validating the theoretical conclusions as well as the effectiveness of the proposed scheme have been included. PMID:27164100

  3. Genetic diversity of the O antigens of Proteus species and the development of a suspension array for molecular serotyping

    PubMed Central

    Yu, Xiang; Torzewska, Agnieszka; Zhang, Xinjie; Yin, Zhiqiu; Drzewiecka, Dominika; Cao, Hengchun; Liu, Bin; Knirel, Yuriy A.; Rozalski, Antoni

    2017-01-01

    Proteus species are well-known opportunistic pathogens frequently associated with skin wound and urinary tract infections in humans and animals. O antigen diversity is important for bacteria to adapt to different hosts and environments, and has been used to identify serotypes of Proteus isolates. At present, 80 Proteus O-serotypes have been reported. Although the O antigen structures of most Proteus serotypes have been identified, the genetic features of these O antigens have not been well characterized. The O antigen gene clusters of Proteus species are located between the cpxA and secB genes. In this study, we identified 55 O antigen gene clusters of different Proteus serotypes. All clusters contain both the wzx and wzy genes and exhibit a high degree of heterogeneity. Potential functions of O antigen-related genes were proposed based on their similarity to genes in available databases. The O antigen gene clusters and structures were compared, and a number of glycosyltransferases were assigned to glycosidic linkages. In addition, an O serotype-specific suspension array was developed for detecting 31 Proteus serotypes frequently isolated from clinical specimens. To our knowledge, this is the first comprehensive report to describe the genetic features of Proteus O antigens and to develop a molecular technique to identify different Proteus serotypes. PMID:28817637

  4. Luminex(®) multiplex bead suspension arrays for the detection and serotyping of Salmonella spp.

    PubMed

    Dunbar, Sherry A; Ritchie, Vivette Brown; Hoffmeyer, Michaela R; Rana, Gunjot S; Zhang, Hongwei

    2015-01-01

    In this chapter we describe two commercially available bead-based molecular assays for detection, identification and serotyping of Salmonella. The xTAG(®) Gastrointestinal Pathogen Panel (GPP) is a qualitative multiplex test for the simultaneous detection of nucleic acids from Salmonella plus 14 other gastroenteritis-causing bacteria, viruses, and parasites from stool specimens. xTAG GPP uses the Luminex(®) xTAG universal array technology for the identification of specific target sequences combined with the xMAP(®) bead multiplexing platform for detection of the targets that were present in the starting sample. The xMAP Salmonella Serotyping Assay (SSA) is a multiplex nucleic acid-based direct hybridization assay for molecular identification of the serotype of Salmonella isolates. In xMAP SSA, target sequences amplified from cultured Salmonella isolates are captured by hybridization to sequence-specific capture probes which have been coupled to the multiplexed bead sets. Herein we provide detailed protocols for each of these assays and present data which describe their performance characteristics for detection and serotyping Salmonella.

  5. A reliable multiplex genotyping assay for HCV using a suspension bead array

    PubMed Central

    Yang, Yi-Chen; Wang, Der-Yuan; Cheng, Hwei-Fang; Chuang, Eric Y; Tsai, Mong-Hsun

    2015-01-01

    The genotyping of the hepatitis C virus (HCV) plays an important role in the treatment of HCV because genotype determination has recently been incorporated into the treatment guidelines for HCV infections. Most current genotyping methods are unable to detect mixed genotypes from two or more HCV infections. We therefore developed a multiplex genotyping assay to determine HCV genotypes using a bead array. Synthetic plasmids, genotype panels and standards were used to verify the target-specific primer (TSP) design in the assay, and the results indicated that discrimination efforts using 10 TSPs in a single reaction were extremely successful. Thirty-five specimens were then tested to evaluate the assay performance, and the results were highly consistent with those of direct sequencing, supporting the reliability of the assay. Moreover, the results from samples with mixed HCV genotypes revealed that the method is capable of detecting two different genotypes within a sample. Furthermore, the specificity evaluation results suggested that the assay could correctly identify HCV in HCV/human immunodeficiency virus (HIV) co-infected patients. This genotyping platform enables the simultaneous detection and identification of more than one genotype in a same sample and is able to test 96 samples simultaneously. It could therefore provide a rapid, efficient and reliable method of determining HCV genotypes in the future. PMID:25042084

  6. Detailed analysis of structure and particle trajectories in sheared suspensions

    NASA Astrophysics Data System (ADS)

    Morris, Jeffrey; Katyal, Bhavana

    1999-11-01

    The structure and particle dynamics of sheared suspensions of hard spheres over a range of shear strength to Brownain motion (Péclet number, Pe) have been studied by detailed analysis of extended sampling of Stokesian Dynamics simulations of simple shear. The emphasis is upon large Pe. The structure has been analyzed by decomposition of the pair distribution function, g(r), into spherical harmonics; the harmonics are a complete set for the decompositon. The results indicate a profound and very marked change in structure due to shearing. It is shown that as Pe increases, the structure is increasingly distorted from teh equilibrium spherical symmetry and the number of harmonics required to recompose the original data to within an arbitrary accuracy increases, and this variation depends upon particle fraction. We present information on the content of the dominant harmonics as a function of radial distance for a pair, and interpret the results in terms of preferred directions in the material. Dynamic particle trajectories at time scales long relative to that used for the Brownian step are analyzed in a novel fashion by simple differential geometric measures, such as root mean square path curvature and torsion. Preliminary results illustrate that the path variation from mean flow correlates with the particle stress.

  7. Rethinking Suspensions

    ERIC Educational Resources Information Center

    Stetson, Frank H.; Collins, Betty J.

    2010-01-01

    The overrepresentation of the Black and Hispanic subgroups in suspension data is a national problem and a troubling issue for schools and school systems across the United States. In Maryland, an analysis of student suspensions by school districts for the 2006-2007 school year revealed disproportionality issues. In 23 of the 24 jurisdictions,…

  8. Rethinking Suspensions

    ERIC Educational Resources Information Center

    Stetson, Frank H.; Collins, Betty J.

    2010-01-01

    The overrepresentation of the Black and Hispanic subgroups in suspension data is a national problem and a troubling issue for schools and school systems across the United States. In Maryland, an analysis of student suspensions by school districts for the 2006-2007 school year revealed disproportionality issues. In 23 of the 24 jurisdictions,…

  9. The concept design and dynamics analysis of a novel vehicle suspension mechanism with invariable orientation parameters

    NASA Astrophysics Data System (ADS)

    Zhao, Jing-Shan; Li, Lingyang; Chen, Liping; Zhang, Yunqing

    2010-12-01

    This paper starts with a classical mechanism synthesis problem and focuses on the concept design and dynamics analysis of an independent suspension that has invariable orientation parameters when the wheel moves up (jounces) and down (rebounds). The paper first proposes a symmetric redundant constraint suspension structure that has invariable orientation parameters. And then, it analyses the mechanism mobility with the reciprocal screw theory, after which it establishes the displacement constraint equations of the suspension. This type of suspension has all the advantages of the sliding pillar suspension but overcomes its disadvantage of over-wearing. Through differentiating the constraint equations with respect to time, it obtains the kinematics relationship and builds up the dynamics equations of the suspension via Newton-Euler method. Numerical simulations indicate that this kind of independent suspensions should not only eliminate the shambling shocks induced by the jumping of wheels but also decrease the abrasion of the wheels. Therefore, this kind of independent suspensions can obviously improve the ride and handling properties of advanced automobiles.

  10. Optical position measurement for a large gap magnetic suspension system: Design and performance analysis

    NASA Technical Reports Server (NTRS)

    Welch, Sharon S.; Clemmons, James I., Jr.; Shelton, Kevin J.; Duncan, Walter C.

    1994-01-01

    An optical measurement system (OMS) has been designed and tested for a large gap magnetic suspension system (LGMSS). The LGMSS will be used to study control laws for magnetic suspension systems for vibration isolation and pointing applications. The LGMSS features six degrees of freedom and consists of a planar array of electromagnets that levitate and position a cylindrical element containing a permanent magnet core. The OMS provides information on the location and orientation of the element to the LGMSS control system to stabilize suspension. The hardware design of this optical sensing system and the tracking algorithms are presented. The results of analyses and experiments are presented that define the accuracy limits of the optical sensing system and that quantify the errors in position estimation.

  11. Genetic Diversity of O-Antigens in Hafnia alvei and the Development of a Suspension Array for Serotype Detection

    PubMed Central

    Duan, Zhifeng; Niedziela, Tomasz; Lugowski, Czeslaw; Cao, Boyang; Wang, Tianwei; Xu, Lingling; Yang, Baopeng; Liu, Bin; Wang, Lei

    2016-01-01

    Hafnia alvei is a facultative and rod-shaped gram-negative bacterium that belongs to the Enterobacteriaceae family. Although it has been more than 50 years since the genus was identified, very little is known about variations among Hafnia species. Diversity in O-antigens (O-polysaccharide, OPS) is thought to be a major factor in bacterial adaptation to different hosts and situations and variability in the environment. Antigenic variation is also an important factor in pathogenicity that has been used to define clones within a number of species. The genes that are required to synthesize OPS are always clustered within the bacterial chromosome. A serotyping scheme including 39 O-serotypes has been proposed for H. alvei, but it has not been correlated with known OPS structures, and no previous report has described the genetic features of OPS. In this study, we obtained the genome sequences of 21 H. alvei strains (as defined by previous immunochemical studies) with different lipopolysaccharides. This is the first study to show that the O-antigen gene cluster in H. alvei is located between mpo and gnd in the chromosome. All 21 of the OPS gene clusters contain both the wzx gene and the wzy gene and display a large number of polymorphisms. We developed an O serotype-specific wzy-based suspension array to detect all 21 of the distinct OPS forms we identified in H. alvei. To the best of our knowledge, this is the first report to identify the genetic features of H. alvei antigenic variation and to develop a molecular technique to identify and classify different serotypes. PMID:27171009

  12. No Evidence for Xenotropic Murine Leukemia-Related Virus Infection in Sweden Using Internally Controlled Multiepitope Suspension Array Serology

    PubMed Central

    Blomberg, Fredrik; Sjösten, Anna; Sheikholvaezin, Ali; Bölin-Wiener, Agnes; Elfaitouri, Amal; Hessel, Sanna; Gottfries, Carl-Gerhard; Zachrisson, Olof; Öhrmalm, Christina; Jobs, Magnus; Pipkorn, Rüdiger

    2012-01-01

    Many syndromes have a large number of differential diagnoses, a situation which calls for multiplex diagnostic systems. Myalgic encephalomyelitis (ME), also named chronic fatigue syndrome (CFS), is a common disease of unknown etiology. A mouse retrovirus, xenotropic murine leukemia-related virus (XMRV), was found in ME/CFS patients and blood donors, but this was not corroborated. However, the paucity of serological investigations on XMRV in humans prompted us to develop a serological assay which cover many aspects of XMRV antigenicity. It is a novel suspension array method, using a multiplex IgG assay with nine recombinant proteins from the env and gag genes of XMRV and 38 peptides based on known epitopes of vertebrate gammaretroviruses. IgG antibodies were sought in 520 blood donors and 85 ME/CFS patients and in positive- and negative-control sera from animals. We found no differences in seroreactivity between blood donors and ME/CFS patients for any of the antigens. This did not support an association between ME/CFS and XMRV infection. The multiplex serological system had several advantages: (i) biotinylated protein G allowed us to run both human and animal sera, which is essential because of a lack of XMRV-positive humans; (ii) a novel quality control was a pan-peptide positive-control rabbit serum; and (iii) synthetic XMRV Gag peptides with degenerate positions covering most of the variation of murine leukemia-like viruses did not give higher background than nondegenerate analogs. The principle may be used for creation of variant tolerant peptide serologies. Thus, our system allows rational large-scale serological assays with built-in quality control. PMID:22787191

  13. Genetic Diversity of O-Antigens in Hafnia alvei and the Development of a Suspension Array for Serotype Detection.

    PubMed

    Duan, Zhifeng; Niedziela, Tomasz; Lugowski, Czeslaw; Cao, Boyang; Wang, Tianwei; Xu, Lingling; Yang, Baopeng; Liu, Bin; Wang, Lei

    2016-01-01

    Hafnia alvei is a facultative and rod-shaped gram-negative bacterium that belongs to the Enterobacteriaceae family. Although it has been more than 50 years since the genus was identified, very little is known about variations among Hafnia species. Diversity in O-antigens (O-polysaccharide, OPS) is thought to be a major factor in bacterial adaptation to different hosts and situations and variability in the environment. Antigenic variation is also an important factor in pathogenicity that has been used to define clones within a number of species. The genes that are required to synthesize OPS are always clustered within the bacterial chromosome. A serotyping scheme including 39 O-serotypes has been proposed for H. alvei, but it has not been correlated with known OPS structures, and no previous report has described the genetic features of OPS. In this study, we obtained the genome sequences of 21 H. alvei strains (as defined by previous immunochemical studies) with different lipopolysaccharides. This is the first study to show that the O-antigen gene cluster in H. alvei is located between mpo and gnd in the chromosome. All 21 of the OPS gene clusters contain both the wzx gene and the wzy gene and display a large number of polymorphisms. We developed an O serotype-specific wzy-based suspension array to detect all 21 of the distinct OPS forms we identified in H. alvei. To the best of our knowledge, this is the first report to identify the genetic features of H. alvei antigenic variation and to develop a molecular technique to identify and classify different serotypes.

  14. Polystyrene Core-Silica Shell Particles with Defined Nanoarchitectures as a Versatile Platform for Suspension Array Technology.

    PubMed

    Sarma, Dominik; Gawlitza, Kornelia; Rurack, Knut

    2016-04-19

    The need for rapid and high-throughput screening in analytical laboratories has led to significant growth in interest in suspension array technologies (SATs), especially with regard to cytometric assays targeting a low to medium number of analytes. Such SAT or bead-based assays rely on spherical objects that constitute the analytical platform. Usually, functionalized polymer or silica (SiO2) microbeads are used which each have distinct advantages and drawbacks. In this paper, we present a straightforward synthetic route to highly monodisperse SiO2-coated polystyrene core-shell (CS) beads for SAT with controllable architectures from smooth to raspberry- and multilayer-like shells by varying the molecular weight of poly(vinylpyrrolidone) (PVP), which was used as the stabilizer of the cores. The combination of both organic polymer core and a structurally controlled inorganic SiO2 shell in one hybrid particle holds great promises for flexible next-generation design of the spherical platform. The particles were characterized by electron microscopy (SEM, T-SEM, and TEM), thermogravimetry, flow cytometry, and nitrogen adsorption/desorption, offering comprehensive information on the composition, size, structure, and surface area. All particles show ideal cytometric detection patterns and facile handling due to the hybrid structure. The beads are endowed with straightforward modification possibilities through the defined SiO2 shells. We successfully implemented the particles in fluorometric SAT model assays, illustrating the benefits of tailored surface area which is readily available for small-molecule anchoring. Very promising assay performance was shown for DNA hybridization assays with quantification limits down to 8 fmol.

  15. Bio-Rad’s Bio-Plex® suspension array system, xMAP technology overview

    PubMed Central

    Houser, Brett

    2012-01-01

    The Bio-Plex® system utilizes xMAP technology to permit the multiplexing of up to 100 different analytes. Multiplex analysis gives researchers the ability to look at analytes simultaneously providing more information from less sample volume in less time than traditional immunoassay methods. Similar to ELISA, xMAP utilizes an antibody sandwich for detection but differs from ELISA in capture substrate and detection method. Rather than a flat surface, Bio-Plex®assays make use of differentially detectable bead sets as a substrate capturing analytes in solution and employs fluorescent methods for detection. These bead sets identify the analytes and detection antibodies are used to measure the quantity of analyte. The use of differentially detectable beads enables the simultaneous identification and quantification of many analytes in the same sample. PMID:22852821

  16. Frequency analysis of a semi-active suspension with magneto-rheological dampers

    NASA Astrophysics Data System (ADS)

    Andronic, Florin; Mihai, Ioan; Suciu, Cornel; Beniuga, Marius

    2015-02-01

    Suspension systems for motor vehicles are constantly evolving in order to ensure vehicle stability and traffic safety under all driving conditions. The present work aims to highlight the influence factors in the case of a quarter car model for semi-active suspensions. The functions that must be met by such suspension systems are first presented. Mathematical models for passive systems are first illustrated and then customized for the semi-active case. A simulation diagram was conceived for Matlab Simulink. The obtained simulation results allow conducting a frequency analysis of the passive and semi-active cases of the quarter car model. Various charts for Passive Suspension Transmissibility and for the Effect of Damping on Vertical Acceleration Response were obtained for both passive and semi-active situations. Analysis of obtained results allowed evaluating of the suspension systems behavior and their frequency dependence. Significant differences were found between the behaviors of passive and semi-active suspensions. It was found that semi-active suspensions ensure damping in accordance to the chosen control method, and are much more efficient than passive ones.

  17. Analysis of Rail Vehicle Suspension Spring with Special Emphasis on Curving, Tracking and Tractive Efforts

    NASA Astrophysics Data System (ADS)

    Kumbhalkar, M. A.; Bhope, D. V.; Vanalkar, A. V.

    2016-09-01

    The dynamics of the rail vehicle represents a balance between the forces acting between wheel and rail, the inertia forces and the forces exerted by suspension and articulation. Axial loading on helical spring causes vertical deflection at straight track but failures calls to investigate for lateral and longitudinal loading at horizontal and vertical curves respectively. Goods carrying vehicle has the frequent failures of middle axle inner suspension spring calls for investigation. The springs are analyzed for effect of stress concentration due to centripetal force and due to tractive and breaking effort. This paper also discusses shear failure analysis of spring at curvature and at uphill at various speeds for different loading condition analytically and by finite element analysis. Two mass rail vehicle suspension systems have been analyzed for vibration responses analytically using mathematical tool Matlab Simulink and the same will be evaluated using FFT vibration analyzer to find peak resonance in vertical, lateral and longitudinal direction. The results prove that the suspension acquires high repeated load in vertical and lateral direction due to tracking and curving causes maximum stress concentration on middle axle suspension spring as height of this spring is larger than end axle spring in primary suspension system and responsible for failure of middle axle suspension spring due to high stress acquisition.

  18. Digital controller design: Analysis of the annular suspension pointing system

    NASA Technical Reports Server (NTRS)

    1977-01-01

    The annular suspension and pointing system (ASPS) a payload auxiliary pointing device of the space shuttle is briefly described along with the function of the digital controller. The equations of motion of a simplified plan planar model of the ASPS are derived. Results of computer simulations are discussed.

  19. Computational Methods for the Analysis of Array Comparative Genomic Hybridization

    PubMed Central

    Chari, Raj; Lockwood, William W.; Lam, Wan L.

    2006-01-01

    Array comparative genomic hybridization (array CGH) is a technique for assaying the copy number status of cancer genomes. The widespread use of this technology has lead to a rapid accumulation of high throughput data, which in turn has prompted the development of computational strategies for the analysis of array CGH data. Here we explain the principles behind array image processing, data visualization and genomic profile analysis, review currently available software packages, and raise considerations for future software development. PMID:17992253

  20. Non-linear buffeting response analysis of long-span suspension bridges with central buckle

    NASA Astrophysics Data System (ADS)

    Wang, Hao; Li, Aiqun; Zhao, Gengwen; Li, Jian

    2010-06-01

    The rigid central buckle employed in the Runyang Suspension Bridge (RSB) was the first time it was used in a suspension bridge in China. By using a spectral representation method and FFT technique combined with measured data, a 3D fluctuating wind field considering the tower wind effect is simulated. A novel FE model for buffeting analysis is then presented, in which a specific user-defined Matrix27 element in ANSYS is employed to simulate the aeroelastic forces and its stiffness or damping matrices are parameterized by wind velocity and vibration frequency. A nonlinear time history analysis is carried out to study the influence of the rigid central buckle on the wind-induced buffeting response of a long-span suspension bridge. The results can be used as a reference for wind resistance design of long-span suspension bridges with a rigid central buckle in the future.

  1. Viscosity of carbon nanotube suspension using artificial neural networks with principal component analysis

    NASA Astrophysics Data System (ADS)

    Yousefi, Fakhri; Karimi, Hajir; Mohammadiyan, Somayeh

    2016-11-01

    This paper applies the model including back-propagation network (BPN) and principal component analysis (PCA) to estimate the effective viscosity of carbon nanotubes suspension. The effective viscosities of multiwall carbon nanotubes suspension are examined as a function of the temperature, nanoparticle volume fraction, effective length of nanoparticle and the viscosity of base fluids using artificial neural network. The obtained results by BPN-PCA model have good agreement with the experimental data.

  2. Wavelet Analysis for Acoustic Phased Array

    NASA Astrophysics Data System (ADS)

    Kozlov, Inna; Zlotnick, Zvi

    2003-03-01

    Wavelet spectrum analysis is known to be one of the most powerful tools for exploring quasistationary signals. In this paper we use wavelet technique to develop a new Direction Finding (DF) Algorithm for the Acoustic Phased Array (APA) systems. Utilising multi-scale analysis of libraries of wavelets allows us to work with frequency bands instead of individual frequency of an acoustic source. These frequency bands could be regarded as features extracted from quasistationary signals emitted by a noisy object. For detection, tracing and identification of a sound source in a noisy environment we develop smart algorithm. The essential part of this algorithm is a special interacting procedure of the above-mentioned DF-algorithm and the wavelet-based Identification (ID) algorithm developed in [4]. Significant improvement of the basic properties of a receiving APA pattern is achieved.

  3. Solar Array Verification Analysis Tool (SAVANT) Developed

    NASA Technical Reports Server (NTRS)

    Bailey, Sheila G.; Long, KIenwyn J.; Curtis, Henry B.; Gardner, Barbara; Davis, Victoria; Messenger, Scott; Walters, Robert

    1999-01-01

    Modeling solar cell performance for a specific radiation environment to obtain the end-of-life photovoltaic array performance has become both increasingly important and, with the rapid advent of new types of cell technology, more difficult. For large constellations of satellites, a few percent difference in the lifetime prediction can have an enormous economic impact. The tool described here automates the assessment of solar array on-orbit end-of-life performance and assists in the development and design of ground test protocols for different solar cell designs. Once established, these protocols can be used to calculate on-orbit end-of-life performance from ground test results. The Solar Array Verification Analysis Tool (SAVANT) utilizes the radiation environment from the Environment Work Bench (EWB) model developed by the NASA Lewis Research Center s Photovoltaic and Space Environmental Effects Branch in conjunction with Maxwell Technologies. It then modifies and combines this information with the displacement damage model proposed by Summers et al. (ref. 1) of the Naval Research Laboratory to determine solar cell performance during the course of a given mission. The resulting predictions can then be compared with flight data. The Environment WorkBench (ref. 2) uses the NASA AE8 (electron) and AP8 (proton) models of the radiation belts to calculate the trapped radiation flux. These fluxes are integrated over the defined spacecraft orbit for the duration of the mission to obtain the total omnidirectional fluence spectra. Components such as the solar cell coverglass, adhesive, and antireflective coatings can slow and attenuate the particle fluence reaching the solar cell. In SAVANT, a continuous slowing down approximation is used to model this effect.

  4. Instantaneous physico-chemical analysis of suspension-based nanomaterials

    PubMed Central

    Meng, Fanxu; Ugaz, Victor M.

    2015-01-01

    High-throughput manufacturing of nanomaterial-based products demands robust online characterization and quality control tools capable of continuously probing the in-suspension state. But existing analytical techniques are challenging to deploy in production settings because they are primarily geared toward small-batch ex-situ operation in research laboratory environments. Here we introduce an approach that overcomes these limitations by exploiting surface complexation interactions that emerge when a micron-scale chemical discontinuity is established between suspended nanoparticles and a molecular tracer. The resulting fluorescence signature is easily detectable and embeds surprisingly rich information about composition, quantity, size, and morphology of nanoparticles in suspension independent of their agglomeration state. We show how this method can be straightforwardly applied to enable continuous sizing of commercial ZnO nanoparticles, and to instantaneously quantify the anatase and rutile composition of multicomponent TiO2 nanoparticle mixtures pertinent to photocatalysis and solar energy conversion. PMID:25923196

  5. BASE Flexible Array Preliminary Lithospheric Structure Analysis

    NASA Astrophysics Data System (ADS)

    Yeck, W. L.; Sheehan, A. F.; Anderson, M. L.; Siddoway, C. S.; Erslev, E.; Harder, S. H.; Miller, K. C.

    2009-12-01

    The Bighorns Arch Seismic Experiment (BASE) is a Flexible Array experiment integrated with EarthScope. The goal of BASE is to develop a better understanding of how basement-involved foreland arches form and what their link is to plate tectonic processes. To achieve this goal, the crustal structure under the Bighorn Mountain range, Bighorn Basin, and Powder River Basin of northern Wyoming and southern Montana are investigated through the deployment of 35 broadband seismometers, 200 short period seismometers, 1600 “Texan” instruments using active sources and 800 “Texan” instruments monitoring passive sources, together with field structural analysis of brittle structures. The novel combination of these approaches and anticipated simultaneous data inversion will give a detailed structural crustal image of the Bighorn region at all levels of the crust. Four models have been proposed for the formation of the Bighorn foreland arch: subhorizontal detachment within the crust, lithospheric buckling, pure shear lithospheric thickening, and fault blocks defined by lithosphere-penetrating thrust faults. During the summer of 2009, we deployed 35 broadband instruments, which have already recorded several magnitude 7+ teleseismic events. Through P wave receiver function analysis of these 35 stations folded in with many EarthScope Transportable Array stations in the region, we present a preliminary map of the Mohorovicic discontinuity. This crustal map is our first test of how the unique Moho geometries predicted by the four hypothesized models of basement involved arches fit seismic observations for the Bighorn Mountains. In addition, shear-wave splitting analysis for our first few recorded teleseisms helps us determine if strong lithospheric deformation is preserved under the range. These analyses help lead us to our final goal, a complete 4D (3D spatial plus temporal) lithospheric-scale model of arch formation which will advance our understanding of the mechanisms

  6. Pinhole array capacitor for oxide integrity analysis

    NASA Technical Reports Server (NTRS)

    Buehler, M. G.; Blaes, B. R.; Pina, C. A.; Griswold, T. W.

    1983-01-01

    The integrity of the metal-poly oxide and the gate oxide was evaluated for several 5-micron CMOS-bulk processes. The pinhole array capacitor consists of diffused and poly fingers that form a network of MOS transistors (elements), which are capped by a deposited oxide and metal layer. The smallest structure used in this study contained about 15,000 elements and the largest structure contained about 68,000 elements. Each structure was divided into several subarrays. The structures are placed a number of times on each wafer. From a yield analysis of the subarrays, the elements per defect were found to be typically in excess of 50,000 elements/defect for the metal-poly oxide and 100,000 elements/defect for the gate oxide. From the switching behavior of the transistors, the gate oxide defects were tentatively identified as gate-to-body shorts rather than gate-to-diffusion shorts.

  7. Pinhole array capacitor for oxide integrity analysis

    NASA Technical Reports Server (NTRS)

    Buehler, M. G.; Blaes, B. R.; Pina, C. A.; Griswold, T. W.

    1985-01-01

    The integrity of the metal-poly oxide and the gate oxide was evaluated for several 5-micron CMOS-bulk process. The pinhole array capacitor consists of diffused and poly fingers that form a network of MOS transistors (elements), which are capped by a deposited oxide and metal layer. The smallest structure used contained about 15,000 elements and the largest structure contained about 68,000 elements. Each structure was divided into several subarrays. The structures are placed a number of times on each wafer. From a yield analysis of the subarrays, the elements per defect were found to be typically in excess of 50,000 elements/defect for the metal-poly oxide and 100,000 elements/defect for the gate oxide. From the switching behavior of the transistors, the gate oxide defects were tentatively identified as gate-to-body shorts rather than gate-to-diffusion shorts.

  8. Mathematical Analysis of a Large-Gap Electromagnetic Suspension System

    NASA Astrophysics Data System (ADS)

    Jump, Addison Benjamin

    In a form of controlled electromagnetic suspension, a permanent magnetic is levitated by a magnetic field; the field is produced by electrical currents passing through coils. These currents are the control input. In a Large -Gap system the coils are at some distance from the suspended body; in general, there is no closed form expression relating the currents to the flux at the point of the suspended body. Thus, in the general case, it is not possible to establish control-theoretic results for this kind of Large -Gap suspension system. It is shown, however, that if the coil placement configuration exhibits a particular cylindrically symmetric structure, expressions can be found relating the coil positions to the flux. These expressions are used to show the existence of a unique equilibrium point and controllability, in five dimensions of control, for a generic form of Large-Gap system. The results are shown to remain true if the suspended body is rotated about a particular axis. Closed form expressions are found for the currents required to suspend the body at these variable orientations. An inequality between difference classes of experimental inputs is shown to be a necessary condition for suspension of the body. It is demonstrated that the addition of coils to the system cannot lead to six dimensions of controllability. Let the system be given by the standard control equationdot x=Ax+Bu Closed form expressions are found for the eigenvalues of A. In the course of proving that some coil placement restrictions may be relaxed, B is shown to be related to the Vandermonde matrix.

  9. Finite element analysis of nonlinear pulsatile suspension flow dynamics in blood vessels with aneurysm.

    PubMed

    Kumar, B V; Naidu, K B

    1995-01-01

    A nonlinear pulsatile suspension flow in a dilated vessel is numerically analysed. Two sets of highly coupled nonlinear partial differential equations governing the suspension flow are numerically solved, to simulate the suspension flow dynamics. A transient velocity-pressure (UVP) finite element method (FEM) and a stable time integration scheme, based on a predictor-corrector strategy, with constant error monitoring are employed in the flow analysis. The pulsatile suspension flow is characterized by analysing the flow, pressure and stress fields. Effects of the nonlinear particulate phase on the nonlinear suspending fluid phase are brought out by comparing the suspension flow results with those of homogeneous flow. Particles are seen to dampen the flow velocity, wall and central axis pressure, pressure gradient and wall shear stress. time-dependent recirculation regions which are sensitive to the presence of particles are seen in the dilated portion of the vessel. These recirculation regions favour thrombogenesis. The nonlinear effects due to the vessel geometry and those due to the convective terms dominate the dampening effect of the particles. These nonlinear effects are depicted through the transverse velocity and pressure plots. Wall shear stresses of suspension flow are not only high but also alternate in direction.

  10. A comparative analysis of passive twin tube and skyhook MRF dampers for motorcycle front suspensions

    NASA Astrophysics Data System (ADS)

    Ahmadian, Mehdi; Gravatt, John

    2004-07-01

    A comparative analysis between conventional passive twin tube dampers and skyhook-controlled magneto-rheological fluid (MRF) dampers for motorcycle front suspensions is provided, based on single axis testing in a damper test rig and suspension performance testing in road trials. Performance motorcycles, while boasting extremely light suspension components and competition-ready performance, have an inherent weakness in comfort, as the suspension systems are designed primarily for racing purposes. Front suspension acceleration and shock loading transmit directly through the front suspension triple clamp into the rider's arms and shoulders, causing rapid fatigue in shoulder muscles. Magneto-rheological fluid dampers and skyhook control systems offer an alternative to conventional sport motorcycle suspensions - both performance and comfort can be combined in the same package. Prototype MRF dampers designed and manufactured specifically for this application require no more space than conventional twin tube designs while adding only 1.7 pounds total weight to the system. The MRF dampers were designed for high controllability and low power consumption, two vital considerations for a motorcycle application. The tests conducted include the dampers' force-velocity curve testing in a damper test rig and suspension performance based on damper position, velocity, and acceleration measurement. Damper test rig results show the MRF dampers have a far greater range of adjustability than the test vehicle's OEM dampers. Combined with a modified sky-hook control system, the MRF dampers can greatly decrease the acceleration and shock loading transmitted to the rider through the handlebars while contributing performance in manners such as anti-dive under braking. Triple clamp acceleration measurements from a variety of staged road conditions, such as sinusoidal wave inputs, will be compared to subjective test-rider field reports to establish a correlation between rider fatigue and the

  11. Array Analysis of North Atlantic Microseisms

    NASA Astrophysics Data System (ADS)

    Craig, David; Bean, Chris; Möllhoff, Martin; Donne, Sarah; Lokmer, Ivan; Le Pape, Florian

    2016-04-01

    Oceans generate persistent low frequency background seismic signals known as microseisms through a mechanical coupling with the Earth's crust. Microseism energy originates as regions of low barometric pressure (depressions) over the oceans where it is transmitted to the sea-floor and propagates as elastic energy in the Earths crust. Consequently microseisms carry important meteorological information relating to both the atmosphere and the hydrosphere. The significance of microseisms as climate indicators has previously been investigated in several studies (Essen et al., 1999; Aster et al., 2010) and to estimate ocean wave parameters using onshore seismometer data (Bromirski et al., 1999). Also many modern seismological methods make use of microseism signals, for example "noise tomography" (Shapiro et al., 2005); spectral ratio techniques ; and cross-correlation techniques (Wapenaar et al., 2011; Brenguier et al., 2014). The continental shelf near Ireland is a known generation are for microseisms and an important region for European weather forecasting and climate studies. There has also been seismometers in the region since the 1960s. There is a single station in Valentia observatory in south-west Ireland and a small scale seismic array in Scotland which offer potential climate records for the region. To make use of this information it is first necessary to understand how microseisms recorded in Ireland relate to the local ocean wavefield. The WAVEOBS project was set established with three primary goals; to get a better fundamental understanding of microseism sources; to investigate the use of ocean generated microseisms as real time ocean wave height data; and to investigate their use as a climate proxy. Using spectral analysis and array methods the microseism wavefield in the North-East Atlantic near Ireland is described with reference to the ocean wavefield.

  12. Three-dimensional nonlinear flutter analysis of long-span suspension bridges during erection.

    PubMed

    Zhang, Xin-jun; Sun, Bing-nan; Xiang, Hai-fan

    2003-01-01

    In this work, the aerodynamic stability of the Yichang Suspension Bridge over Yangtze River during erection was determined by three-dimensional nonlinear flutter analysis, in which the nonlinearities of structural dynamic characteristics and aeroelastic forces caused by large deformation are fully considered. An interesting result obtained was that the bridge was more stable when the stiffening girders were erected in a non-symmetrical manner as opposed to the traditional symmetrical erection schedule. It was also found that the severe decrease in the aerodynamic stability was due to the nonlinear effects. Therefore, the nonlinear factors should be considered accurately in aerodynamic stability analysis of long-span suspension bridges during erection.

  13. Digital controller design: Analysis of the annular suspension pointing system

    NASA Technical Reports Server (NTRS)

    Kuo, B. C.

    1979-01-01

    The Annular Suspension and Pointing System (ASPS) is a payload auxiliary pointing device of the Space Shuttle. The ASPS is comprised of two major subassemblies, a vernier and a coarse pointing subsystem. The experiment is attached to a mounting plate/rim combination which is suspended on magnetic bearing/actuators (MBA) strategically located about the rim. Fine pointing is achieved by gimballing the plate/rim within the MBA gaps. Control about the experiment line-of-sight is obtained through the use of a non-contacting rim drive and positioning torquer. All sensors used to close the servo loops on the vernier system are noncontacting elements. Therefore, the experiment is a free-flyer constrained only by the magnetic forces generated by the control loops.

  14. Analysis of impact of suspension rubber mounts on ride comfort

    NASA Astrophysics Data System (ADS)

    Chen, Bao; Chen, Zheming; Lei, Gang

    2017-01-01

    Two multi-body car models with rubber mounts and without rubber mounts have been built up to research how the suspension rubber mounts impact ride comfort. The comfort mount was used to simulate the impact process. Two scenarios have been set up, and time integrations have been performed to get the acceleration-time histories of seat surface in the x-, y-, and z-direction. A MATLAB program was compiled to calculate the weighted RMS acceleration. For the first scenario, the relative difference of weighted RMS acceleration between the car models with rubber mounts and without rubber mounts gradually decreases as the road roughness increases. For the second scenario, the relative difference increases as the driving speed increases. The conclusion shows that the change of driving speed or road roughness impacts ride comfort. Especially for high driving speed this impact is quite obvious.

  15. Decorrelation correction for nanoparticle tracking analysis of dilute polydisperse suspensions in bulk flow

    NASA Astrophysics Data System (ADS)

    Hartman, John; Kirby, Brian

    2017-03-01

    Nanoparticle tracking analysis, a multiprobe single particle tracking technique, is a widely used method to quickly determine the concentration and size distribution of colloidal particle suspensions. Many popular tools remove non-Brownian components of particle motion by subtracting the ensemble-average displacement at each time step, which is termed dedrifting. Though critical for accurate size measurements, dedrifting is shown here to introduce significant biasing error and can fundamentally limit the dynamic range of particle size that can be measured for dilute heterogeneous suspensions such as biological extracellular vesicles. We report a more accurate estimate of particle mean-square displacement, which we call decorrelation analysis, that accounts for correlations between individual and ensemble particle motion, which are spuriously introduced by dedrifting. Particle tracking simulation and experimental results show that this approach more accurately determines particle diameters for low-concentration polydisperse suspensions when compared with standard dedrifting techniques.

  16. Decorrelation correction for nanoparticle tracking analysis of dilute polydisperse suspensions in bulk flow.

    PubMed

    Hartman, John; Kirby, Brian

    2017-03-01

    Nanoparticle tracking analysis, a multiprobe single particle tracking technique, is a widely used method to quickly determine the concentration and size distribution of colloidal particle suspensions. Many popular tools remove non-Brownian components of particle motion by subtracting the ensemble-average displacement at each time step, which is termed dedrifting. Though critical for accurate size measurements, dedrifting is shown here to introduce significant biasing error and can fundamentally limit the dynamic range of particle size that can be measured for dilute heterogeneous suspensions such as biological extracellular vesicles. We report a more accurate estimate of particle mean-square displacement, which we call decorrelation analysis, that accounts for correlations between individual and ensemble particle motion, which are spuriously introduced by dedrifting. Particle tracking simulation and experimental results show that this approach more accurately determines particle diameters for low-concentration polydisperse suspensions when compared with standard dedrifting techniques.

  17. Structural health monitoring of long-span suspension bridges using wavelet packet analysis

    NASA Astrophysics Data System (ADS)

    Ding, Youliang; Li, Aiqun

    2007-09-01

    During the service life of civil engineering structures such as long-span bridges, local damage at key positions may continually accumulate, and may finally result in their sudden failure. One core issue of global vibration-based health monitoring methods is to seek some damage indices that are sensitive to structural damage. This paper proposes an online structural health monitoring method for long-span suspension bridges using wavelet packet transform (WPT). The WPT-based method is based on the energy variations of structural ambient vibration responses decomposed using wavelet packet analysis. The main feature of this method is that the proposed wavelet packet energy spectrum (WPES) has the ability to detect structural damage from ambient vibration tests of a long-span suspension bridge. As an example application, the WPES-based health monitoring system is used on the Runyang Suspension Bridge under daily environmental conditions. The analysis reveals that changes in environmental temperature have a long-term influence on the WPES, while the effect of traffic loadings on the measured WPES of the bridge presents instantaneous changes because of the nonstationary properties of the loadings. The condition indication indices V D reflect the influences of environmental temperature on the dynamic properties of the Runyang Suspension Bridge. The field tests demonstrate that the proposed WPES-based condition indication index V D is a good candidate index for health monitoring of long-span suspension bridges under ambient excitations.

  18. Rapid O serogroup identification of the ten most clinically relevant STECs by Luminex microbead-based suspension array

    USDA-ARS?s Scientific Manuscript database

    Identification and serotyping of Shiga toxin-producing Escherichia coli during foodborne outbreaks can aid in matching clinical, food, and environmental isolates when trying to identify the sources of illness and ultimately food contamination. Herein we describe a Luminex microbead-based suspension ...

  19. BASE Flexible Array Preliminary Receiver Function Analysis

    NASA Astrophysics Data System (ADS)

    Yeck, W. L.; Sheehan, A. F.; Schulte-Pelkum, V.; Yang, Z.; Anderson, M. L.; Erslev, E.

    2010-12-01

    We present high-density, high-resolution receiver function (RF) images of the Bighorn Mountains of north central Wyoming, to gain insight into the subsurface seismic structures of the range, as part of the Bighorn Arch Seismic Experiment (BASE). Our data set contains over 220 three component seismic stations in the Bighorns region, in some areas with spacing less than 5 km. BASE is a Flexible Array experiment integrated with Earthscope. In order to investigate the Bighorns, a large-scale deployment of seismic instrumentation was deployed in the summers of 2009 and 2010. This included 38 broadband and 172 short period seismic stations, as well as both passive and active source ‘Texan’ deployments. Stations were placed to both densify the already present Transportable Array network as well as to create 5 linear transects. Station spacing along these transects range from four to ten kilometers, crossing the Bighorn Basin, through the Bighorn Arch, and into the Powder River Basin. The main objective of the BASE project is to better understand the tectonic processes involved in the formation of basement-cored arches. The formation of these structures remains a key unsolved tectonic problem. The Bighorn Mountains are an archetype of basement-involved foreland arches and therefore act as an excellent setting for the investigation of these types of structures. Four main formation models have been proposed for the Bighorns, each with unique crustal structures. Through a complete structural analysis of the range, relying heavily on seismic subsurface imaging, it will be possible to determine which of these models best fit observations. Moho topography is a crucial component in supporting these hypotheses, and should be well resolved with RF imaging. In this study P-S wave RFs are used to image the structures beneath the Bighorn Mountains. We present ideas for modeling and filtering approaches to dampen low velocity sedimentary layer reverberations in the Powder River and

  20. Theoretical and FEM analysis of suspension and propulsion system with HTS hybrid electromagnets in an EMS Maglev model

    NASA Astrophysics Data System (ADS)

    Chung, Y. D.; Lee, C. Y.; Jang, J. Y.; Yoon, Y. S.; Ko, T. K.

    2011-11-01

    We have been constructed a proto-type electromagnetic suspension (EMS) based maglev vehicle system. The maglev concept utilizes magnetic forces for noncontact suspension, guidance and propulsion. The suspension system with high temperature superconducting (HTS) hybrid electromagnet (EM) is composed of HTS coils and normal coils, which consume little power to keep large suspension gap. The magnetic forces realize to guide the vehicle, propel the vehicle along the guide-way and assist in braking action. The proto-type EMS-based Maglev model is designed to keep the suspension gap of 20 mm. This paper presents the theoretical analysis of the maglev vehicle based on the EMS model to obtain the designing parameters for levitation and propulsion forces. The magnetic field distributions of the electromagnetic forces with hybrid EM and propulsion stator coils are analyzed based on three dimension (3D) finite element method (FEM) analysis. From the simulation results, appropriately design parameters of the suspension, guidance and propulsion were obtained.

  1. Analysis of cylindrical arrays of microstrip rectangular patches

    NASA Astrophysics Data System (ADS)

    da Silva, C. M.; Lumini, F.; Lacava, J. C. D.; Richards, F. P.

    1991-04-01

    A model for analysis of the radiation characteristics of cylindrical arrays of microstrip rectangular patches is presented. The model is based on the Green function for the multilayered structure calculated in the Fourier domain. The fields radiated by the array are calculated through an asymptotic expression obtained by the application of the stationary phase method. Radiation characteristics such as the directivity function, the ripple and the crosspolarization level are discussed for arrays excited in the TM(01) mode.

  2. Spacecraft Multiple Array Communication System Performance Analysis

    NASA Technical Reports Server (NTRS)

    Hwu, Shian U.; Desilva, Kanishka; Sham, Catherine C.

    2010-01-01

    The Communication Systems Simulation Laboratory (CSSL) at the NASA Johnson Space Center is tasked to perform spacecraft and ground network communication system simulations, design validation, and performance verification. The CSSL has developed simulation tools that model spacecraft communication systems and the space and ground environment in which the tools operate. In this paper, a spacecraft communication system with multiple arrays is simulated. Multiple array combined technique is used to increase the radio frequency coverage and data rate performance. The technique is to achieve phase coherence among the phased arrays to combine the signals at the targeting receiver constructively. There are many technical challenges in spacecraft integration with a high transmit power communication system. The array combining technique can improve the communication system data rate and coverage performances without increasing the system transmit power requirements. Example simulation results indicate significant performance improvement can be achieved with phase coherence implementation.

  3. Roll and pitch independently tuned interconnected suspension: modelling and dynamic analysis

    NASA Astrophysics Data System (ADS)

    Xu, Guangzhong; Zhang, Nong; Roser, Holger M.

    2015-12-01

    In this paper, a roll and pitch independently tuned hydraulically interconnected passive suspension is presented. Due to decoupling of vibration modes and the improved lateral and longitudinal stability, the stiffness of individual suspension spring can be reduced for improving ride comfort and road grip. A generalised 14 degree-of-freedom nonlinear vehicle model with anti-roll bars is established to investigate the vehicle ride and handling dynamic responses. The nonlinear fluidic model of the hydraulically interconnected suspension is developed and integrated with the full vehicle model to investigate the anti-roll and anti-pitch characteristics. Time domain analysis of the vehicle model with the proposed suspension is conducted under different road excitations and steering/braking manoeuvres. The dynamic responses are compared with conventional suspensions to demonstrate the potential of enhanced ride and handling performance. The results illustrate the model-decoupling property of the hydraulically interconnected system. The anti-roll and anti-pitch performance could be tuned independently by the interconnected systems. With the improved anti-roll and anti-pitch characteristics, the bounce stiffness and ride damping can be optimised for better ride comfort and tyre grip.

  4. Analysis of the limitations of hepatitis B surface antigen expression in soybean cell suspension cultures.

    PubMed

    Ganapathi, T R; Sunil Kumar, G B; Srinivas, L; Revathi, C J; Bapat, V A

    2007-09-01

    Soybean cell suspension cultures were transformed using Agrobacterium tumefaciens harboring pHBS/pHER constructs to express hepatitis B surface antigen (HBsAg). The transformed colonies were selected and analyzed for the expression of HBsAg by PCR, reverse transcription (RT) PCR, Western blot and ELISA analysis. The maximum expression of 700 ng/g F.W. was noted in pHER transformed cells. The highest expressing colonies were used to initiate the cell suspension cultures and the expression of HBsAg was estimated periodically. The expression levels were reduced drastically in cell suspension cultures compared to the colonies maintained on semi-solid medium. Various parameters were studied to maximize the cell growth and to retain the expression levels. The supplementation of culture medium with a protease inhibitor, leupeptin hemisulfate could restore up to 50% of HBsAg expression in cell suspension cultures. This is the first report to investigate the possible cause and solution to the loss of recombinant protein expression levels in plant cell suspension cultures.

  5. [Comparative analysis of changes in rats organisms exposed to microgravity and head-down suspension].

    PubMed

    Il'in, E A; Kaplanskiĭ, A S

    1998-01-01

    Comparative analysis of metabolic and structural shifts in rats following 14 days of microgravity aboard biosatellite Cosmos-2044 and their tail-suspended synchronous controls gave evidence that suspension-induced deprivation of hind limbs of support loading yields inherent to microgravity shifts the endocrine control of energy, plastic, and mineral metabolism. The conclusion has been drawn that tail-suspension can be used as a model of the microgravity effects on the musculoskeletal apparatus and the endocrine systems controlling metabolism in muscles and bones.

  6. Size analysis of suspension inhalation aerosols by inertial separation methods.

    PubMed

    Hallworth, G W; Andrews, U G

    1976-12-01

    The particle size distribution of beclomethasone dipropionate (BDP) aerosols delivered from pressurized metered dose suspension inhalers has been measured with three cascaded inertial separation instruments, the Casella Cascade Impactor, Multistage Liquid Impinger and Cascade Centripeter. Various methods for collecting the emitted aerosol before measurement have been examined. A bent glass tubular 'throat', used as a simulated oro-pharynx, collects 35-60% of the emitted dose by impingement of the wet spray cone in the throat. The aerosol passing through the throat has a similar but somewhat finer size distribution to that collected by firing directly into a large flask. The three cascaded instruments give similar results which in the Multistage Liquid Impinger also resemble those given by a salbutamol inhaler. The mass fraction (35-60%) emitted from the oral adaptor which is of a size capable of deep lung penetration ( less than 4 mum) is much higher than the fraction (10-16%) found in the lungs of dogs after inhalation of aerosol. The size distributions resemble those determined by microscopy and are expressed as aerodynamic sizes, thus showing that the particles approximate to unit density spheres. The performance of two simpler devices, Kirk's apparatus and the Harwell size selective air sampler are also assessed, the latter shows some promise for the simple evaluation of the respirable fraction of inhalation aerosols.

  7. Analysis and experimental validation of an HTS linear synchronous propulsion prototype with HTS magnetic suspension

    NASA Astrophysics Data System (ADS)

    Jin, Jianxun; Zheng, Luhai; Guo, Youguang; Xu, Wei; Zhu, Jianguo

    2011-09-01

    A high temperature superconducting (HTS) linear propulsion system composed of a single-sided HTS linear synchronous motor (HTSLSM) in its middle and HTS magnetic suspension sub-systems on both sides has been developed. The HTSLSM uses an HTS bulk magnet array on the moving secondary, and the field-trapped characteristics of the HTS bulk using different magnetized methods have been measured and compared to identify their magnetization capability. In order to generate a large levitation force for the system, three different types of permanent magnet guideways (PMGs) have been numerically analyzed and experimentally verified to obtain an optimal PMG. Based on comprehensive experimental prototype tests, the results show that the HTS linear propulsion system can run with stable magnetic suspension having a constant air-gap length, and the thrust characteristics versus the exciting current, working frequency and the air-gap length have also been obtained. This work forms the basis for developing a practical HTS linear propulsion system by using HTS bulks both for propulsion and suspension.

  8. Fabrication of plasmonic cavity arrays for SERS analysis.

    PubMed

    Li, Ning; Feng, Lei; Teng, Fei; Lu, Nan

    2017-05-05

    The plasmonic cavity arrays are ideal substrates for surface enhanced Raman scattering analysis because they can provide hot spots with large volume for analyte molecules. The large area increases the probability to make more analyte molecules on hot spots and leads to a high reproducibility. Therefore, to develop a simple method for creating cavity arrays is important. Herein, we demonstrate how to fabricate a V and W shape cavity arrays by a simple method based on self-assembly. Briefly, the V and W shape cavity arrays are respectively fabricated by taking KOH etching on a nanohole and a nanoring array patterned silicon (Si) slides. The nanohole array is generated by taking a reactive ion etching on a Si slide assembled with monolayer of polystyrene (PS) spheres. The nanoring array is generated by taking a reactive ion etching on a Si slide covered with a monolayer of octadecyltrichlorosilane before self-assembling PS spheres. Both plasmonic V and W cavity arrays can provide large hot area, which increases the probability for analyte molecules to deposit on the hot spots. Taking 4-Mercaptopyridine as analyte probe, the enhancement factor can reach 2.99 × 10(5) and 9.97 × 10(5) for plasmonic V cavity and W cavity array, respectively. The relative standard deviations of the plasmonic V and W cavity arrays are 6.5% and 10.2% respectively according to the spectra collected on 20 random spots.

  9. Rapid Screening of Complex Chemical Samples via Capillary Array Analysis

    SciTech Connect

    D. S. Anex; D. W. Neyer

    1998-11-01

    This report is a summary of the results of a two-year Laboratory-Directed Research and Development (LDRD) project that developed instrumentation and methods for capillary array analysis. During the course of this project, a new capillary array electrochromatography instrument was developed to perform eight simultaneous separations and provide complementary chromatographic information from each column on a single sample.

  10. Simultaneous detection of ochratoxin A and fumonisin B1 in cereal samples using an aptamer-photonic crystal encoded suspension array.

    PubMed

    Yue, Sun; Jie, Xu; Wei, Li; Bin, Cao; Dou Dou, Wang; Yi, Yang; QingXia, Lin; JianLin, Li; TieSong, Zheng

    2014-12-02

    A simple, new aptamer-photonic crystal encoded suspension array was designed to simultaneously quantify and qualify ochratoxin A(OTA) and fumonisin B1(FB1) in cereal samples. The aptamers of OTA and FB1 were immobilized on the surfaces of photonic crystals by chemical bonding. When the target mycotoxins appear in a sample, the fluorescence-labeled complementary DNA of the aptamer dissociates from their double DNA hybrid and results in an obvious decrease in fluorescence intensity of the microsphere. The difference value of fluorescent intensities for each kind of silica photonic crystal microsphere (SPCM) quantitatively conveys the concentration of mycotoxin, and the structure colors or reflectance peak positions of the SPCMs confirm the kind of mycotoxin detected. The reaction conditions including the immobilization method for aptamers, hybridization, and incubation conditions have been optimized. This developed method displayed a wide linear detection range (0.01-1 ng/mL for OTA and 0.001-1 ng/mL for FB1) and a low limit of detection (0.25 pg/mL for OTA and 0.16 pg/mL for FB1). The recovery rates in the spiked cereal samples ranged from 81.80% to 116.38% for OTA and 76.58%-114.79% for FB1. The positive detection results in the naturally contaminated cereal samples were in agreement with those of classic enzyme-linked immunosorbent assay (ELISA). This simple suspension array scheme displays a great application potential for the high throughput screen assay of mycotoxins.

  11. The integral suspension pressure method (ISP) for precise particle-size analysis by gravitational sedimentation

    NASA Astrophysics Data System (ADS)

    Durner, Wolfgang; Iden, Sascha C.; von Unold, Georg

    2017-04-01

    The particle-size distribution (PSD) of a soil expresses the mass fractions of various sizes of mineral particles which constitute the soil material. It is a fundamental soil property, closely related to most physical and chemical soil properties and it affects almost any soil function. The experimental determination of soil texture, i.e., the relative amounts of sand, silt, and clay-sized particles, is done in the laboratory by a combination of sieving (sand) and gravitational sedimentation (silt and clay). In the latter, Stokes' law is applied to derive the particle size from the settling velocity in an aqueous suspension. Traditionally, there are two methodologies for particle-size analysis from sedimentation experiments: the pipette method and the hydrometer method. Both techniques rely on measuring the temporal change of the particle concentration or density of the suspension at a certain depth within the suspension. In this paper, we propose a new method which is based on the pressure in the suspension at a selected depth, which is an integral measure of all particles in suspension above the measuring depth. We derive a mathematical model which predicts the pressure decrease due to settling of particles as function of the PSD. The PSD of the analyzed sample is identified by fitting the simulated time series of pressure to the observed one by inverse modeling using global optimization. The new method yields the PSD in very high resolution and its experimental realization completely avoids any disturbance by the measuring process. A sensitivity analysis of different soil textures demonstrates that the method yields unbiased estimates of the PSD with very small estimation variance and an absolute error in the clay and silt fraction of less than 0.5%

  12. The integral suspension pressure method (ISP) for precise particle-size analysis by gravitational sedimentation

    NASA Astrophysics Data System (ADS)

    Durner, Wolfgang; Iden, Sascha C.; von Unold, Georg

    2017-01-01

    The particle-size distribution (PSD) of a soil expresses the mass fractions of various sizes of mineral particles which constitute the soil material. It is a fundamental soil property, closely related to most physical and chemical soil properties and it affects almost any soil function. The experimental determination of soil texture, i.e., the relative amounts of sand, silt, and clay-sized particles, is done in the laboratory by a combination of sieving (sand) and gravitational sedimentation (silt and clay). In the latter, Stokes' law is applied to derive the particle size from the settling velocity in an aqueous suspension. Traditionally, there are two methodologies for particle-size analysis from sedimentation experiments: the pipette method and the hydrometer method. Both techniques rely on measuring the temporal change of the particle concentration or density of the suspension at a certain depth within the suspension. In this paper, we propose a new method which is based on the pressure in the suspension at a selected depth, which is an integral measure of all particles in suspension above the measuring depth. We derive a mathematical model which predicts the pressure decrease due to settling of particles as function of the PSD. The PSD of the analyzed sample is identified by fitting the simulated time series of pressure to the observed one by inverse modeling using global optimization. The new method yields the PSD in very high resolution and its experimental realization completely avoids any disturbance by the measuring process. A sensitivity analysis of different soil textures demonstrates that the method yields unbiased estimates of the PSD with very small estimation variance and an absolute error in the clay and silt fraction of less than 0.5%.

  13. Economic analysis of the unified heliostat array

    SciTech Connect

    Not Available

    1980-11-07

    The Unified Heliostat Array (UHA) is comprised of conventional two-axis heliostats mounted on a terraced south-facing wall of a single structure. The arrangement of heliostats on the array is chosen to eliminate or control the degree of inter-heliostat shading and blocking. The UHA was investifated as to cost and optical performance. Two heliostats, the Veda Industrial Heliostat (VIH) and the Repowering Heliostat were investigated in conjunction with the UHA. The UHA was found to be a viable candidate for solar thermal central receiver applications. The UHA-VIH combination was shown to provide very high flux densities and to be suitable for high temperature applications in the 1000/sup 0/K to 2000/sup 0/K range. These temperatures were shown to be achievable even with very small (1 MWt) collector fields.

  14. Economic analysis of the unified heliostat array

    NASA Astrophysics Data System (ADS)

    1980-11-01

    The array (UHA) is comprised of conventional two-axis heliostats mounted on a terraced south-facing wall of a single structure. The arrangement of heliostats on the array is chosen to eliminate or control the degree of inter-heliostat shading and blocking. The UHA was investigated as to cost and optical performance. Two heliostats, the Veda Industrial Heliostat (VIH) and the Repowering Helistat were investigated in conjunction with the UHA. The UHA is found to be a viable candidate for solar thermal central receiver applications. The UHA-VIH combination was shown to provide very high flux densities and to be suitable for high temperature applications in the 1000 K to 2000 K range. These temperatures were shown to be achieve even with very small (1 MWt) collector fields.

  15. Performance analysis of microphone array methods

    NASA Astrophysics Data System (ADS)

    Herold, Gert; Sarradj, Ennes

    2017-08-01

    Microphone array methods aim at the characterization of multiple simultaneously operating sound sources. However, existing data processing algorithms have been shown to yield different results when applied to the same input data. The present paper introduces a method for estimating the reliability of such algorithms. Using Monte Carlo simulations, data sets with random variation of selected parameters are generated. Four different microphone array methods are applied to analyze the simulated data sets. The calculated results are compared with the expected outcome, and the dependency of the reliability on several parameters is quantified. It is shown not only that the performance of a method depends on the given source distribution, but also that the methods differ in terms of their sensitivity to imperfect input data.

  16. Geometric analysis and restitution of digital multispectral scanner data arrays

    NASA Technical Reports Server (NTRS)

    Baker, J. R.; Mikhail, E. M.

    1975-01-01

    An investigation was conducted to define causes of geometric defects within digital multispectral scanner (MSS) data arrays, to analyze the resulting geometric errors, and to investigate restitution methods to correct or reduce these errors. Geometric transformation relationships for scanned data, from which collinearity equations may be derived, served as the basis of parametric methods of analysis and restitution of MSS digital data arrays. The linearization of these collinearity equations is presented. Algorithms considered for use in analysis and restitution included the MSS collinearity equations, piecewise polynomials based on linearized collinearity equations, and nonparametric algorithms. A proposed system for geometric analysis and restitution of MSS digital data arrays was used to evaluate these algorithms, utilizing actual MSS data arrays. It was shown that collinearity equations and nonparametric algorithms both yield acceptable results, but nonparametric algorithms possess definite advantages in computational efficiency. Piecewise polynomials were found to yield inferior results.

  17. Analysis and performance of flat-plate solar collector arrays

    SciTech Connect

    Wang, X.A.; Wu, L.G. )

    1990-01-01

    A new discrete numerical model is proposed to calculate the flow and temperature distribution in solar collector arrays. The flow nonuniformity, the longitudinal heat conduction, and the buoyancy effect are all taken into account in the analysis. The numerical results of pressure and temperature distribution are found in agreement with the experimental results. It is found that the flow nonuniformity has detrimental effect on the thermal performance of collector array.

  18. Non-dimensionalised closed-form parametric analysis of semi-active vehicle suspensions using a quarter-car model

    NASA Astrophysics Data System (ADS)

    Ahmadian, Mehdi; Blanchard, Emmanuel

    2011-02-01

    This article provides a non-dimensionalised closed-form analysis of semi-active vehicle suspensions, using a quarter-car model. The derivation of the closed-form solutions for three indices that can be used for ride comfort, vehicle handling, and stability are presented based on non-dimensionalised suspension parameters. The behaviour of semi-active vehicle suspensions is evaluated using skyhook, groundhook, and hybrid control policies, and compared with passive suspensions. The relationship between vibration isolation, suspension deflection, and road holding is studied, using three performance indices based on the mean square of the sprung mass acceleration, rattle space, and tyre deflection, respectively. The results of the study indicate that the hybrid control policy yields significantly better comfort than a passive suspension, without reducing the road-holding quality or increasing the suspension displacement for typical passenger cars. The results also indicate that for typical passenger cars, the hybrid control policy results in a better compromise between comfort, road holding and suspension travel requirements than both the skyhook and groundhook control methods.

  19. Qualitative analysis of controlled release ciprofloxacin/carbopol 934 mucoadhesive suspension

    PubMed Central

    Sahoo, Subhashree; Chakraborti, Chandra Kanti; Mishra, Subash Chandra

    2011-01-01

    Mucoadhesive polymeric (carbopol 934) suspension of ciprofloxacin was prepared by ultrasonication and optimized with the aim of developing an oral controlled release gastro-retentive dosage form. The qualitative analysis of the formulation was performed by fourier transform infrared spectroscopy (FTIR), Raman spectroscopy, X-ray powder diffraction (XRD), and scanning electron microscopy (SEM) analyses. FTIR (400 cm-1 to 4000 cm-1 region) and Raman (140 to 2400 cm-1 region) Spectroscopic studies were carried out and the spectra were used for interpretation. XRD data of pure drug, polymer and the formulation were obtained using a powder diffractometer scanned from a Bragg's angle (2θ) of 10° to 70°. The dispersion of the particle was observed using SEM techniques. The particle size distribution and aspect ratio of particles in the polymeric suspension were obtained from SEM image analysis. The results from FTIR and Raman spectroscopic analyses suggested that, in formulation, the carboxylic groups of ciprofloxacin and hydroxyl groups of C934 undergo a chemical interaction leading to esterification and hydrogen bonding. The XRD data suggested that the retention of crystalline nature of ciprofloxacin in the formulation would lead to increase in stability and drug loading; decrease in solubility; and delay in release of the drug from polymeric suspension with better bioavailability and penetration capacity. The SEM image analysis indicated that, in the formulation maximum particles were having aspect ratio from 2 to 4 and standard deviation was very less which provided supporting evidences for homogeneous, uniformly dispersed, stable controlled release ciprofloxacin suspension which would be pharmaceutically acceptable. PMID:22171318

  20. Qualitative analysis of controlled release ciprofloxacin/carbopol 934 mucoadhesive suspension.

    PubMed

    Sahoo, Subhashree; Chakraborti, Chandra Kanti; Mishra, Subash Chandra

    2011-07-01

    Mucoadhesive polymeric (carbopol 934) suspension of ciprofloxacin was prepared by ultrasonication and optimized with the aim of developing an oral controlled release gastro-retentive dosage form. The qualitative analysis of the formulation was performed by fourier transform infrared spectroscopy (FTIR), Raman spectroscopy, X-ray powder diffraction (XRD), and scanning electron microscopy (SEM) analyses. FTIR (400 cm(-1) to 4000 cm(-1) region) and Raman (140 to 2400 cm(-1) region) Spectroscopic studies were carried out and the spectra were used for interpretation. XRD data of pure drug, polymer and the formulation were obtained using a powder diffractometer scanned from a Bragg's angle (2θ) of 10° to 70°. The dispersion of the particle was observed using SEM techniques. The particle size distribution and aspect ratio of particles in the polymeric suspension were obtained from SEM image analysis. The results from FTIR and Raman spectroscopic analyses suggested that, in formulation, the carboxylic groups of ciprofloxacin and hydroxyl groups of C934 undergo a chemical interaction leading to esterification and hydrogen bonding. The XRD data suggested that the retention of crystalline nature of ciprofloxacin in the formulation would lead to increase in stability and drug loading; decrease in solubility; and delay in release of the drug from polymeric suspension with better bioavailability and penetration capacity. The SEM image analysis indicated that, in the formulation maximum particles were having aspect ratio from 2 to 4 and standard deviation was very less which provided supporting evidences for homogeneous, uniformly dispersed, stable controlled release ciprofloxacin suspension which would be pharmaceutically acceptable.

  1. Rapid Analysis, Self-Calibrating Array for Air Monitoring

    NASA Technical Reports Server (NTRS)

    Homer, Margie L.; Shevade, Abhijit V.; Lara, Liana; Huerta, Ramon; Vergara, Alexander; Muezzinoglua, Mehmet K.

    2012-01-01

    Human space missions have critical needs for monitoring and control for life support systems. These systems have monitoring needs that include feedback for closed loop processes and quality control for environmental factors. Sensors and monitoring technologies assure that the air environment and water supply for the astronaut crew habitat fall within acceptable limits, and that the life support system is functioning properly and efficiently. The longer the flight duration and the more distant the destination, the more critical it becomes to have carefully monitored and automated control systems for life support. Past experiments with the JPL ENose have demonstrated a lifetime of the sensor array, with the software, of around 18 months. The lifetime of the calibration, for some analytes, was as long as 24 months. We are working on a sensor array and new algorithms that will include sensor response time in the analysis. The preliminary array analysis for two analytes shows that the analysis time, of an event, can be dropped from 45 minutes to less than10 minutes and array training time can be cut substantially. We will describe the lifetime testing of an array and show lifetime data on individual sensors. This progress will lead to more rapid identification of analytes, and faster training time of the array.

  2. Rapid Analysis, Self-Calibrating Array for Air Monitoring

    NASA Technical Reports Server (NTRS)

    Homer, Margie L.; Shevade, Abhijit V.; Lara, Liana; Huerta, Ramon; Vergara, Alexander; Muezzinoglua, Mehmet K.

    2012-01-01

    Human space missions have critical needs for monitoring and control for life support systems. These systems have monitoring needs that include feedback for closed loop processes and quality control for environmental factors. Sensors and monitoring technologies assure that the air environment and water supply for the astronaut crew habitat fall within acceptable limits, and that the life support system is functioning properly and efficiently. The longer the flight duration and the more distant the destination, the more critical it becomes to have carefully monitored and automated control systems for life support. Past experiments with the JPL ENose have demonstrated a lifetime of the sensor array, with the software, of around 18 months. The lifetime of the calibration, for some analytes, was as long as 24 months. We are working on a sensor array and new algorithms that will include sensor response time in the analysis. The preliminary array analysis for two analytes shows that the analysis time, of an event, can be dropped from 45 minutes to less than10 minutes and array training time can be cut substantially. We will describe the lifetime testing of an array and show lifetime data on individual sensors. This progress will lead to more rapid identification of analytes, and faster training time of the array.

  3. Modeling and analysis of electrorheological suspensions in shear flow

    NASA Astrophysics Data System (ADS)

    Seo, Youngwook P.; Chua, Wei Huan; Seo, Yongsok

    2015-05-01

    A new rheological model was applied to the analysis of the electrorheological behavior of a fluid containing silica nanoparticle-decorated polyaniline nanofibers. A model's predictions were compared with the experimental data, revealing that the proposed model correctly predicted the shear stress behavior both quantitatively and qualitatively. The shear stress data of the electrorheological fluid showing aligned fibers' structural reformation as a function of the shear rate agreed well with the new model which required fewer parameters than the CCJ (Cho-Choi-Jhon) model. The static yield stress was found to be quadratically dependent on the field strength, in agreement with the predictions of the polarization model. A scaling function was used to model the yield stress behavior of the electrorheological fluid over a range of electric fields, and it correctly predicted the static yield stress behavior both quantitatively and qualitatively.

  4. Performance Analysis of a NASA Integrated Network Array

    NASA Technical Reports Server (NTRS)

    Nessel, James A.

    2012-01-01

    The Space Communications and Navigation (SCaN) Program is planning to integrate its individual networks into a unified network which will function as a single entity to provide services to user missions. This integrated network architecture is expected to provide SCaN customers with the capabilities to seamlessly use any of the available SCaN assets to support their missions to efficiently meet the collective needs of Agency missions. One potential optimal application of these assets, based on this envisioned architecture, is that of arraying across existing networks to significantly enhance data rates and/or link availabilities. As such, this document provides an analysis of the transmit and receive performance of a proposed SCaN inter-network antenna array. From the study, it is determined that a fully integrated internetwork array does not provide any significant advantage over an intra-network array, one in which the assets of an individual network are arrayed for enhanced performance. Therefore, it is the recommendation of this study that NASA proceed with an arraying concept, with a fundamental focus on a network-centric arraying.

  5. Performance analysis of a semi-active railway vehicle suspension featuring MR dampers

    NASA Astrophysics Data System (ADS)

    Kim, Hwan-Choong; Choi, Seung-Bok; Lee, Gyu-Seop; An, Chae-Hun; You, Won-Hee

    2014-03-01

    This paper presents performance analysis of semi-active railway vehicle suspension system using MR damper. In order to achieve this goal, a mathematical dynamic model of railway vehicle is derived by integrating car body, bogie frame and wheel-set which can be able to represent lateral, yaw and roll motion. Based on this model, the dynamic range of MR damper at the railway secondary suspension system and design parameters of MR damper are calculated. Subsequently, control performances of railway vehicle including car body lateral motion and acceleration of MR damper are evaluated through computer simulations. Then, the MR damper is manufactured to be retrofitted with the real railway vehicle and its characteristics are experimentally measured. Experimental performance of MR damper is assessed using test rig which is composed of a car body and two bogies.

  6. Electrooptical Analysis of Microbial Cell Suspensions forDetermination of Antibiotic Resistance.

    PubMed

    Guliy, Olga I; Bunin, Victor D; Korzhenevich, Vyacheslav I; Volkov, Alexey A; Ignatov, Oleg V

    2016-12-01

    The effects of ampicillin; kanamycin, chloramphenicol, and tetracycline on electrophysical characteristics of cells of sensitive (ampicillin; kanamycin, chloramphenicol) and resistant (ampicillin; kanamycin, chloramphenicol, tetracycline) Escherichia coli strains were studied. Under the action of antibiotics sensitive and resistant E. coli strains acquire different electro-optical properties. Changes in suspension-orientational spectra, that are observed under the action of ampicillin; kanamycin, chloramphenicol, and tetracycline can be used in determination of antibiotic resistance of the studied bacterial strains. In our opinion, the methods of microbial suspension electro-optical analysis can be used in microbiology, mеdicinе, veterinary, and are an effective tool for solving the problems connected with determination of microbial cell antibiotic resistance.

  7. Analysis of nanoparticle agglomeration in aqueous suspensions via constant-number Monte Carlo simulation.

    PubMed

    Liu, Haoyang Haven; Surawanvijit, Sirikarn; Rallo, Robert; Orkoulas, Gerassimos; Cohen, Yoram

    2011-11-01

    A constant-number direct simulation Monte Carlo (DSMC) model was developed for the analysis of nanoparticle (NP) agglomeration in aqueous suspensions. The modeling approach, based on the "particles in a box" simulation method, considered both particle agglomeration and gravitational settling. Particle-particle agglomeration probability was determined based on the classical Derjaguin-Landau-Verwey-Overbeek (DLVO) theory and considerations of the collision frequency as impacted by Brownian motion. Model predictions were in reasonable agreement with respect to the particle size distribution and average agglomerate size when compared with dynamic light scattering (DLS) measurements for aqueous TiO(2), CeO(2), and C(60) nanoparticle suspensions over a wide range of pH (3-10) and ionic strength (0.01-156 mM). Simulations also demonstrated, in quantitative agreement with DLS measurements, that nanoparticle agglomerate size increased both with ionic strength and as the solution pH approached the isoelectric point (IEP). The present work suggests that the DSMC modeling approach, along with future use of an extended DLVO theory, has the potential for becoming a practical environmental analysis tool for predicting the agglomeration behavior of aqueous nanoparticle suspensions.

  8. Callogenesis and cell suspension establishment of tropical highland blackberry (Rubus adenotrichos Schltdl.) and its microscopic analysis.

    PubMed

    Schmidt-Durán, Alexander; Alvarado-Ulloa, Carlos; Chacón-Cerdas, Randall; Alvarado-Marchena, Luis Fernando; Flores-Mora, Dora

    2016-01-01

    Blackberries are fruits produced worldwide, with 25 % of their production centered in Mexico, Central and South America. Tropical highland blackberry is a fruit that can potentially enhance human health, due to their high content in phenolic compounds, which include anthocyanins, phenolic acids, tannins (gallotannins and elagitannins) and flavonoids. Therefore, the overall aim of this study is the development of a callus induction protocol, the establishment of blackberry cell suspensions (Rubus adenotrichos Schltdl.) and their cell analysis through optical microscopy and TEM, for the potential production of phenolic compounds. In order to produce callogenesis, segments of blackberry leaves were disinfected and placed in different concentrations of 2,4-D and the control media (0; 0.5; 1.0; 1.5; 2.0; 2.5 and 3.0 mg/l of 2,4-D); obtaining the higher size of calli in the medium with 1.5 mg/l of 2,4-D. After this determination, and for this specific treatment, a growth curve was performed through the use of fresh and dry weight parameters, in order to identify each of the growth stages. Furthermore, the calli obtained from the 1.5 mg/l of 2,4-D treatment were placed in two different culture media (MS and MS supplemented with 1.5 mg/l of 2,4-D) in order to establish the cell suspensions and the growth curve. To the best treatment, the total polyphenols were also quantified. It was determined that the MS medium is ideal for the growth and disintegration of the cell suspensions, obtaining 0.0256 mg of gallic acid/g of fresh sample. Finally, a cell callus and cell suspension analysis was performed through OM and TEM, evidencing a higher hystological differentiation in the calli, as well as the observation of antioxidant storage in the plastids.

  9. International Space Station 2A Array Modal Analysis

    NASA Technical Reports Server (NTRS)

    Laible, Michael; Fitzpatrick, Kristin; Grygier, Michael

    2012-01-01

    On December 9th 2009, the International Space Station (ISS) 2A solar array mast experienced prolonged longeron shadowing during a Soyuz undocking. Analytical reconstruction of induced thermal and dynamic structural loads showed an exceedance of the mast buckling limit. Possible structural damage to the solar array mast could have occurred during this event. A Low fidelity video survey of the 2A mast showed no obvious damage of the mast longerons or battens. The decision was made to conduct an on-orbit dynamic test of the 2A array on December 18th, 2009. The test included thruster pluming on the array while photogrammetry data was recorded. The test was similar to other Dedicated Thruster Firings (DTFs) that were performed to measure structural frequency and damping of a solar array. Results of the DTF indicated lower frequency mast modes than model predictions, thus leading to speculation of mast damage. A detailed nonlinear analysis was performed on the 2A array model to assess possible solutions to modal differences. The setup of the parametric nonlinear trade study included the use of a detailed array model and the reduced mass and stiffness matrices of the entire ISS being applied to the array interface. The study revealed that the array attachment structure is nonlinear and thus was the source of error in the model prediction of mast modes. In addition, a detailed study was performed to determine mast mode sensitivity to mast longeron damage. This sensitivity study was performed to assess if the ISS program has sufficient instrumentation for mast damage detection.

  10. Stability of binary and ternary model oil-field particle suspensions: a multivariate analysis approach.

    PubMed

    Dudásová, Dorota; Rune Flåten, Geir; Sjöblom, Johan; Øye, Gisle

    2009-09-15

    The transmission profiles of one- to three-component particle suspension mixtures were analyzed by multivariate methods such as principal component analysis (PCA) and partial least-squares regression (PLS). The particles mimic the solids present in oil-field-produced water. Kaolin and silica represent solids of reservoir origin, whereas FeS is the product of bacterial metabolic activities, and Fe(3)O(4) corrosion product (e.g., from pipelines). All particles were coated with crude oil surface active components to imitate particles in real systems. The effects of different variables (concentration, temperature, and coating) on the suspension stability were studied with Turbiscan LAb(Expert). The transmission profiles over 75 min represent the overall water quality, while the transmission during the first 15.5 min gives information for suspension behavior during a representative time period for the hold time in the separator. The behavior of the mixed particle suspensions was compared to that of the single particle suspensions and models describing the systems were built. The findings are summarized as follows: silica seems to dominate the mixture properties in the binary suspensions toward enhanced separation. For 75 min, temperature and concentration are the most significant, while for 15.5 min, concentration is the only significant variable. Models for prediction of transmission spectra from run parameters as well as particle type from transmission profiles (inverse calibration) give a reasonable description of the relationships. In ternary particle mixtures, silica is not dominant and for 75 min, the significant variables for mixture (temperature and coating) are more similar to single kaolin and FeS/Fe(3)O(4). On the other hand, for 15.5 min, the coating is the most significant and this is similar to one for silica (at 15.5 min). The model for prediction of transmission spectra from run parameters gives good estimates of the transmission profiles. Although the

  11. EzArray: A web-based highly automated Affymetrix expression array data management and analysis system

    PubMed Central

    Zhu, Yuerong; Zhu, Yuelin; Xu, Wei

    2008-01-01

    Background Though microarray experiments are very popular in life science research, managing and analyzing microarray data are still challenging tasks for many biologists. Most microarray programs require users to have sophisticated knowledge of mathematics, statistics and computer skills for usage. With accumulating microarray data deposited in public databases, easy-to-use programs to re-analyze previously published microarray data are in high demand. Results EzArray is a web-based Affymetrix expression array data management and analysis system for researchers who need to organize microarray data efficiently and get data analyzed instantly. EzArray organizes microarray data into projects that can be analyzed online with predefined or custom procedures. EzArray performs data preprocessing and detection of differentially expressed genes with statistical methods. All analysis procedures are optimized and highly automated so that even novice users with limited pre-knowledge of microarray data analysis can complete initial analysis quickly. Since all input files, analysis parameters, and executed scripts can be downloaded, EzArray provides maximum reproducibility for each analysis. In addition, EzArray integrates with Gene Expression Omnibus (GEO) and allows instantaneous re-analysis of published array data. Conclusion EzArray is a novel Affymetrix expression array data analysis and sharing system. EzArray provides easy-to-use tools for re-analyzing published microarray data and will help both novice and experienced users perform initial analysis of their microarray data from the location of data storage. We believe EzArray will be a useful system for facilities with microarray services and laboratories with multiple members involved in microarray data analysis. EzArray is freely available from . PMID:18218103

  12. Galloping comparative analysis for transient main cables of suspension bridge during construction

    NASA Astrophysics Data System (ADS)

    Li, Shengli; Peng, Gang; Zhang, Haiting; Chen, Huai

    2011-04-01

    The cross-sectional shapes of two construction projects for the transient main cables are non-circular cross-sections during construction of the long-span suspension bridge, so the transient main cables can experience galloping instabilities. The galloping coefficients of the several representative cases of two construction projects for the transient main cables without wind-resistant measures for the long-span suspension bridge were investigated for the first time by means of the CFD method, referring to an erecting suspension bridge. Results show that for the project 1, at the early stages of the main cables construction, the galloping instabilities can occur, but at the later stages of that, the galloping instabilities cannot occur. For the project 2, there exists a lot of wind attack angles whose galloping coefficients are less than 0 at the whole construction stages. From the perspective for galloping instability the project 1 is better 2.Through the analysis and comparison the galloping performance of two kinds of construction projects for the transient main cables, the advantage and disadvantage for two construction projects is explained theoretically from the perspective for whether can result in the galloping instability.

  13. Analysis of Dynamic Stiffness Effect of Primary Suspension Helical Springs on Railway Vehicle Vibration

    NASA Astrophysics Data System (ADS)

    Sun, W.; Thompson, D. J.; Zhou, J.; Gong, D.

    2016-09-01

    Helical springs within the primary suspension are critical components for isolating the whole vehicle system from vibration generated at the wheel/rail contact. As train speeds increase, the frequency region of excitation becomes larger, and a simplified static stiffness can no longer represent the real stiffness property in a vehicle dynamic model. Coil springs in particular exhibit strong internal resonances, which lead to high vibration amplitudes within the spring itself as well as degradation of the vibration isolation. In this paper, the dynamic stiffness matrix method is used to determine the dynamic stiffness of a helical spring from a vehicle primary suspension. Results are confirmed with a finite element analysis. Then the spring dynamic stiffness is included within a vehicle-track coupled dynamic model of a high speed train and the effect of the dynamic stiffening of the spring on the vehicle vibration is investigated. It is shown that, for frequencies above about 50 Hz, the dynamic stiffness of the helical spring changes sharply. Due to this effect, the vibration transmissibility increases considerably which results in poor vibration isolation of the primary suspension. Introducing a rubber layer in series with the coil spring can attenuate this effect.

  14. Suspension trapping (STrap) sample preparation method for bottom-up proteomics analysis.

    PubMed

    Zougman, Alexandre; Selby, Peter J; Banks, Rosamonde E

    2014-05-01

    Despite recent developments in bottom-up proteomics, the need still exists in a fast, uncomplicated, and robust method for comprehensive sample processing especially when applied to low protein amounts. The suspension trapping method combines the advantage of efficient SDS-based protein extraction with rapid detergent removal, reactor-type protein digestion, and peptide cleanup. Proteins are solubilized in SDS. The sample is acidified and introduced into the suspension trapping tip incorporating the depth filter and hydrophobic compartments, filled with the neutral pH methanolic solution. The instantly formed fine protein suspension is trapped in the depth filter stack-this crucial step is aimed at separating the particulate matter in space. SDS and other contaminants are removed in the flow-through, and a protease is introduced. Following the digestion, the peptides are cleaned up using the tip's hydrophobic part. The methodology allows processing of protein loads down to the low microgram/submicrogram levels. The detergent removal takes about 5 min, whereas the tryptic proteolysis of a cellular lysate is complete in as little as 30 min. We have successfully utilized the method for analysis of cellular lysates, enriched membrane preparations, and immunoprecipitates. We expect that due to its robustness and simplicity, the method will become an essential proteomics tool.

  15. Studying Mixing in Non-Newtonian Blue Maize Flour Suspensions Using Color Analysis

    PubMed Central

    Trujillo-de Santiago, Grissel; Rojas-de Gante, Cecilia; García-Lara, Silverio; Ballescá-Estrada, Adriana; Alvarez, Mario Moisés

    2014-01-01

    Background Non-Newtonian fluids occur in many relevant flow and mixing scenarios at the lab and industrial scale. The addition of acid or basic solutions to a non-Newtonian fluid is not an infrequent operation, particularly in Biotechnology applications where the pH of Non-Newtonian culture broths is usually regulated using this strategy. Methodology and Findings We conducted mixing experiments in agitated vessels using Non-Newtonian blue maize flour suspensions. Acid or basic pulses were injected to reveal mixing patterns and flow structures and to follow their time evolution. No foreign pH indicator was used as blue maize flours naturally contain anthocyanins that act as a native, wide spectrum, pH indicator. We describe a novel method to quantitate mixedness and mixing evolution through Dynamic Color Analysis (DCA) in this system. Color readings corresponding to different times and locations within the mixing vessel were taken with a digital camera (or a colorimeter) and translated to the CIELab scale of colors. We use distances in the Lab space, a 3D color space, between a particular mixing state and the final mixing point to characterize segregation/mixing in the system. Conclusion and Relevance Blue maize suspensions represent an adequate and flexible model to study mixing (and fluid mechanics in general) in Non-Newtonian suspensions using acid/base tracer injections. Simple strategies based on the evaluation of color distances in the CIELab space (or other scales such as HSB) can be adapted to characterize mixedness and mixing evolution in experiments using blue maize suspensions. PMID:25401332

  16. Studying mixing in Non-Newtonian blue maize flour suspensions using color analysis.

    PubMed

    Trujillo-de Santiago, Grissel; Rojas-de Gante, Cecilia; García-Lara, Silverio; Ballescá-Estrada, Adriana; Alvarez, Mario Moisés

    2014-01-01

    Non-Newtonian fluids occur in many relevant flow and mixing scenarios at the lab and industrial scale. The addition of acid or basic solutions to a non-Newtonian fluid is not an infrequent operation, particularly in Biotechnology applications where the pH of Non-Newtonian culture broths is usually regulated using this strategy. We conducted mixing experiments in agitated vessels using Non-Newtonian blue maize flour suspensions. Acid or basic pulses were injected to reveal mixing patterns and flow structures and to follow their time evolution. No foreign pH indicator was used as blue maize flours naturally contain anthocyanins that act as a native, wide spectrum, pH indicator. We describe a novel method to quantitate mixedness and mixing evolution through Dynamic Color Analysis (DCA) in this system. Color readings corresponding to different times and locations within the mixing vessel were taken with a digital camera (or a colorimeter) and translated to the CIELab scale of colors. We use distances in the Lab space, a 3D color space, between a particular mixing state and the final mixing point to characterize segregation/mixing in the system. Blue maize suspensions represent an adequate and flexible model to study mixing (and fluid mechanics in general) in Non-Newtonian suspensions using acid/base tracer injections. Simple strategies based on the evaluation of color distances in the CIELab space (or other scales such as HSB) can be adapted to characterize mixedness and mixing evolution in experiments using blue maize suspensions.

  17. On the Statics for Micro-Array Data Analysis

    NASA Astrophysics Data System (ADS)

    Urushibara, Tomoko; Akasaka, Shizu; Ito, Makiko; Suzuki, Tomonori; Miyazaki, Satoru

    2010-01-01

    Recently after human genome sequence has been determined almost perfectly, more and more researchers have been studying genes in detail. Therefore, we are sure that accumulated gene information for human will be getting more important in the near future to develop customized medicine and to make gene interactions clear. Among plenty of information, micro array might be one of the most important analysis method for genes because it is the technique that can get big amount of the gene expressions data from one time experiment and also can be used for DNA isolation. To get the novel knowledge from micro array data, we need to enrich statistical tools for its data analysis. So far, many mathematical theories and definition have been proposing. However, many of those proposals are tested with strict conditions or customized to data for specific species. In this paper, we reviewed existing typical statistical methods for micro array analysis and discussed the repeatability of the analysis, construction the guideline with more general procedure. First we analyzed the micro array data for TG rats, with statistical methods of family-wise error rate (FWER) control approach and False Discovery Rate (FDR) control approach. As existing report, no significantly different gene could be detected with FWER control approach. On the other hand, we could find several genes significantly with FDR control approach even q=0.5. To find out the reliability of FDR control approach with micro array conditions, we have analyzed 2 more pieces of data from Gene Expression Omnibus (GEO) public database on the web site with SAM in addition to FWER and FDR control approaches. We could find a certain number of significantly different genes with BH method and SAM in the case of q=0.05. However, we have to note that the number and kinds of detected genes are different when we compare our result with the one from the published paper. Even if the same approach is used to analyze the same micro array

  18. Analysis and simulation of a magnetic bearing suspension system for a laboratory model annular momentum control device

    NASA Technical Reports Server (NTRS)

    Groom, N. J.; Woolley, C. T.; Joshi, S. M.

    1981-01-01

    A linear analysis and the results of a nonlinear simulation of a magnetic bearing suspension system which uses permanent magnet flux biasing are presented. The magnetic bearing suspension is part of a 4068 N-m-s (3000 lb-ft-sec) laboratory model annular momentum control device (AMCD). The simulation includes rigid body rim dynamics, linear and nonlinear axial actuators, linear radial actuators, axial and radial rim warp, and power supply and power driver current limits.

  19. Independent Component Analysis of Nanomechanical Responses of Cantilever Arrays

    SciTech Connect

    Archibald, Richard K; Datskos, Panos G; Noid, Don W; Lavrik, Nickolay V

    2007-01-01

    The ability to detect and identify chemical and biological elements in air or liquid environments is of far reaching importance. Performing this task using technology that minimally impacts the perceived environment is the ultimate goal. The development of functionalized cantilever arrays with nanomechanical sensing is an important step towards this ambition. This report couples the feature extraction abilities of Independent Component Analysis (ICA) and the classification techniques of neural networks to analyze the signals produced by microcantilever-array-based nanomechanical sensors. The unique capabilities of this analysis unleash the potential of this sensing technology to accurately determine the identities and concentrations of the components of chemical mixtures. Furthermore, it is demonstrated that the knowledge of how the sensor array reacts to individual analytes in isolation is sufficient information to decode mixtures of analytes - a substantial benefit, significantly increasing the analytical utility of these sensing devices.

  20. Neural network based analysis for chemical sensor arrays

    SciTech Connect

    Hashem, S.; Keller, P.E.; Kouzes, R.T.; Kangas, L.J.

    1995-04-01

    Compact, portable systems capable of quickly identifying contaminants in the field are of great importance when monitoring the environment. In this paper, we examine the effectiveness of using artificial neural networks for real-time data analysis of a sensor array. Analyzing the sensor data in parallel may allow for rapid identification of contaminants in the field without requiring highly selective individual sensors. We use a prototype sensor array which consists of nine tin-oxide Taguchi-type sensors, a temperature sensor, and a humidity sensor. We illustrate that by using neural network based analysis of the sensor data, the selectivity of the sensor array may be significantly improved, especially when some (or all) the sensors are not highly selective.

  1. Analysis of an off road 4WD vehicle's suspension system modification - Case study of aftermarket suspension lift and modification of wheel track size

    NASA Astrophysics Data System (ADS)

    Ross, J.; Hazrat, M. A.; Rasul, M. G.

    2016-07-01

    In this research, a four wheel drive (4WD) suspension of a vehicle has been modified by increasing the ride height to investigate stability and cornering potential of the vehicle through load transfer and variation of roll angle. Further investigation has been conducted to observe the characteristics which are deemed desirable for off road application but detrimental to the on road application. The Constant Radius Cornering Test (CRCT) was chosen as a base method for experimental investigation to observe the effect of the suspension modifications. The test was carried out by undertaking a known radius and cambered corner at a constant speed. For this test, the acceleration and gyroscopic data were measured to check and compare the accuracy of the analysis performed by OptimumDynamics model. The tests were conducted by means of negotiating the curve at the speed of 80 km/h and it was gradually achieved to allow a good consensus of the amount of body roll the vehicle experienced. Using a surveyor's wheel, the radius of the corner was estimated as 160 m and using the gyroscopic sensor, the corner camber was measured at 4 degrees. While comparing the experimental results with the simulation results, the experimental constraints led to higher values than those of the analytical results. The total load transfer reduced by 2.9% with the increased track size. It has been observed that the dynamic load transfer component is lesser than the standard suspension with the aftermarket suspension lift and the upgraded anti-roll bar (ARB). With the simulation of the fitment of the other modifications aimed to improve the characteristics of the raised vehicle, the vehicle showed a reduced tendency towards roll angle due to the stiffened anti-roll bar and the maximum increased wheel track demonstrated reduced lateral load transfer and body roll. Even with these modifications however, the decrease in load transfer is minimal in comparison to what was expected.

  2. Automated Purification and Suspension Array Detection of 16S rRNA from Soil and Sediment Extracts Using Tunable Surface Microparticles

    SciTech Connect

    Chandler, Darrell P.; Jarrell, Ann E.

    2004-05-01

    Autonomous, field-deployable molecular detection systems require seamless integration of complex biochemical solutions and physical or mechanical processing steps. In an attempt to simplify the fluidic requirements for integrated biodetection systems, we used tunable surface microparticles both as an rRNA affinity purification resin in a renewable microcolumn sample preparation system and as the sensor surface in a flow cytometer detector. The tunable surface detection limits in both low- and high-salt buffers were 1 ng of total RNA (~104 cell equivalents) in 15-min test tube hybridizations and 10 ng of total RNA (~105 cell equivalents) in hybridizations with the automated system (30-s contact time). RNA fragmentation was essential for achieving tunable surface suspension array specificity. Chaperone probes reduced but did not completely eliminate cross-hybridization, even with probes sharing <50% identity to target sequences. Nonpurified environmental extracts did not irreparably affect our ability to classify color-coded microparticles, but residual environmental constituents significantly quenched the Alexa-532 reporter fluor. Modulating surface charge did not influence the interaction of soluble environmental contaminants with conjugated beads. The automated system greatly reduced the effects of fluorescence quenching, especially in the soil background. The automated system was as efficacious as manual methods for simultaneous sample purification, hybridization, and washing prior to flow cytometry detection. The implications of unexpected target cross-hybridization and fluorescence quenching are discussed relative to the design and implementation of an integrated microbial monitoring system.

  3. Evaluation of micro-organism-detaching efficacy from meat samples by spindle or stomacher treatment and quality analysis of suspensions.

    PubMed

    Kim, S-J; Kim, D-K; Kang, D-H

    2016-04-01

    We investigated and compared the efficacy of a new apparatus for detaching micro-organisms from meat samples. The efficacy of Spindle and stomacher in detaching micro-organisms from meat samples was evaluated. Also, evaluation of appropriateness of suspensions generated by both methods for carrying out molecular biological analysis was implemented. A nearly identical correlation and high R(2) were obtained between Spindle and stomacher in Aerobic Plate Count (APC), and no significant differences were observed in detachment of three major foodborne pathogens. The suspension generated by the Spindle showed lower turbidity and total protein concentration. Also, significantly different threshold cycles were observed in Real-time PCR analysis using suspensions generated by both methods. The Spindle shows nearly identical efficacy with stomacher treatment in detaching micro-organisms from meat samples. Furthermore, the high quality of suspensions generated by the Spindle, in terms of turbidity and total protein assay, allows for a lower threshold cycle than stomached suspension in Real-time PCR. The Spindle could be an alternative method for detaching micro-organisms, yielding a higher quality of suspensions which may be better suited for further molecular microbiological analysis. © 2016 The Society for Applied Microbiology.

  4. Thermoelastic analysis of solar cell arrays and their material properties

    NASA Technical Reports Server (NTRS)

    Salama, M. A.; Rowe, W. M.; Yasui, R. K.

    1973-01-01

    A thermoelastic stress analysis procedure is reported for predicting the thermally induced stresses and failures in silicon solar cell arrays. A prerequisite for the analysis is the characterization of the temperature-dependent thermal and mechanical properties of the solar cell materials. Extensive material property testing was carried out in the temperature range -200 to +200 C for the filter glass, P- and N-type silicon, interconnector metals, solder, and several candidate silicone rubber adhesives. The analysis procedure is applied to several solar cell array design configurations. Results of the analysis indicate the optimum design configuration, with respect to compatible materials, effect of the solder coating, and effect of the interconnector geometry. Good agreement was found between results of the analysis and the test program.

  5. Rapid prenatal diagnosis of cytogenetic abnormalities by array CGH analysis

    USDA-ARS?s Scientific Manuscript database

    Array CGH analysis has been shown to be highly accurate for rapid detection of chromosomal aneuploidies and submicroscopic deletions or duplications on fetal DNA samples in a clinical prenatal diagnostic setting. The objective of this study is to present our "post-validation phase" experience with ...

  6. Off-road motorbike performance analysis using a rear semi-active suspension

    NASA Astrophysics Data System (ADS)

    Lozoya-Santos, Jorge de J.; Cervantes-Muñoz, Damián.; Ramírez Mendoza, Ricardo

    2015-04-01

    The topic of this paper is the analysis of a control system for a semi active rear suspension in an off-road 2-wheel vehicle. Several control methods are studied, as well as the recently proposed Frequency Estimation Based (FEB) algorithm. The test motorcycle dynamics, as well as the passive, semi active, and the algorithm controlled shock absorber models are loaded into BikeSim, a professional two-wheeled vehicle simulation software, and tested in several road conditions. The results show a detailed comparison of the theoretical performance of the different control approaches in a novel environment for semi active dampers.

  7. Digital interactive image analysis by array processing

    NASA Technical Reports Server (NTRS)

    Sabels, B. E.; Jennings, J. D.

    1973-01-01

    An attempt is made to draw a parallel between the existing geophysical data processing service industries and the emerging earth resources data support requirements. The relationship of seismic data analysis to ERTS data analysis is natural because in either case data is digitally recorded in the same format, resulting from remotely sensed energy which has been reflected, attenuated, shifted and degraded on its path from the source to the receiver. In the seismic case the energy is acoustic, ranging in frequencies from 10 to 75 cps, for which the lithosphere appears semi-transparent. In earth survey remote sensing through the atmosphere, visible and infrared frequency bands are being used. Yet the hardware and software required to process the magnetically recorded data from the two realms of inquiry are identical and similar, respectively. The resulting data products are similar.

  8. Analysis of Enriched Uranyl Nitrate in Nested Annular Tank Array

    SciTech Connect

    John D. Bess; James D. Cleaver

    2009-06-01

    Two series of experiments were performed at the Rocky Flats Critical Mass Laboratory during the 1980s using highly enriched (93%) uranyl nitrate solution in annular tanks. [1, 2] Tanks were of typical sizes found in nuclear production plants. Experiments looked at tanks of varying radii in a co-located set of nested tanks, a 1 by 2 array, and a 1 by 3 array. The co-located set of tanks had been analyzed previously [3] as a benchmark for inclusion within the International Handbook of Evaluated Criticality Safety Benchmark Experiments. [4] The current study represents the benchmark analysis of the 1 by 3 array of a series of nested annular tanks. Of the seventeen configurations performed in this set of experiments, twelve were evaluated and nine were judged as acceptable benchmarks.

  9. Modelling and characteristic analysis of tri-axle trucks with hydraulically interconnected suspensions

    NASA Astrophysics Data System (ADS)

    Ding, Fei; Han, Xu; Luo, Zhen; Zhang, Nong

    2012-12-01

    In this paper, a new hydraulically interconnected suspension (HIS) system is proposed for the implementation of a resistance control for the pitch and bounce modes of tri-axle heavy trucks. A lumped-mass half-truck model is established using the free-body diagram method. The equations of motion of a mechanical and hydraulic coupled system are developed by incorporating the hydraulic strut forces into the mechanical subsystem as externally applied forces. The transfer matrix method (TMM) is used to evaluate the impedance matrix of the hydraulic subsystem consisting of models of fluid pipes, damper valves, accumulators, and three-way junctions. The TMM is further applied to find the quantitative relationships between the hydraulic strut forces and boundary flow of the mechanical-fluid interactive subsystem. The modal analysis method is employed to perform the vibration analysis between the trucks with the conventional suspension and the proposed HIS. Comparison analysis focuses on free vibration with identified eigenvalues and eigenvectors, isolation vibration capacity, and force vibration in terms of the power spectrum density responses. The obtained results show the effectiveness of the proposed HIS system in reducing the pitch motion of sprung mass and simultaneously maintaining the ride comfort. The pitch stiffness is increased while the bounce stiffness is slightly softened. The peak values of sprung mass and wheel hop motions are greatly reduced, and the vibration decay rate of sprung mass is also significantly increased.

  10. Study on failure analysis of array chip components in IRFPA

    NASA Astrophysics Data System (ADS)

    Zhang, Xiaonan; He, Yingjie; Li, Jinping

    2016-10-01

    Infrared focal plane array detector has advantages of strong anti-interference ability and high sensitivity. Its size, weight and power dissipation has been noticeably decreased compared to the conventional infrared imaging system. With the development of the detector manufacture technology and the cost reduction, IRFPA detector has been widely used in the military and commercial fields. Due to the restricting of array chip manufacturing process and material defects, the fault phenomenon such as cracking, bad pixel and abnormal output was showed during the test, which restricts the performance of the infrared detector imaging system, and these effects are gradually intensified with the expanding of the focal plane array size and the shrinking of the pixel size. Based on the analysis of the test results for the infrared detector array chip components, the fault phenomenon was classified. The main cause of the chip component failure is chip cracking, bad pixel and abnormal output. The reason of the failure has been analyzed deeply. According to analyze the mechanism of the failure, a series of measures which contain filtrating materials and optimizing the manufacturing process of array chip components were used to improve the performance of the chip components and the test pass rate, which is used to meet the needs of the detector performance.

  11. Analysis of Camera Arrays Applicable to the Internet of Things

    PubMed Central

    Yang, Jiachen; Xu, Ru; Lv, Zhihan; Song, Houbing

    2016-01-01

    The Internet of Things is built based on various sensors and networks. Sensors for stereo capture are essential for acquiring information and have been applied in different fields. In this paper, we focus on the camera modeling and analysis, which is very important for stereo display and helps with viewing. We model two kinds of cameras, a parallel and a converged one, and analyze the difference between them in vertical and horizontal parallax. Even though different kinds of camera arrays are used in various applications and analyzed in the research work, there are few discussions on the comparison of them. Therefore, we make a detailed analysis about their performance over different shooting distances. From our analysis, we find that the threshold of shooting distance for converged cameras is 7 m. In addition, we design a camera array in our work that can be used as a parallel camera array, as well as a converged camera array and take some images and videos with it to identify the threshold. PMID:27011189

  12. Analysis of Camera Arrays Applicable to the Internet of Things.

    PubMed

    Yang, Jiachen; Xu, Ru; Lv, Zhihan; Song, Houbing

    2016-03-22

    The Internet of Things is built based on various sensors and networks. Sensors for stereo capture are essential for acquiring information and have been applied in different fields. In this paper, we focus on the camera modeling and analysis, which is very important for stereo display and helps with viewing. We model two kinds of cameras, a parallel and a converged one, and analyze the difference between them in vertical and horizontal parallax. Even though different kinds of camera arrays are used in various applications and analyzed in the research work, there are few discussions on the comparison of them. Therefore, we make a detailed analysis about their performance over different shooting distances. From our analysis, we find that the threshold of shooting distance for converged cameras is 7 m. In addition, we design a camera array in our work that can be used as a parallel camera array, as well as a converged camera array and take some images and videos with it to identify the threshold.

  13. A Darker Shade of Gray: A Year-End Analysis of Discipline and Suspension Data.

    ERIC Educational Resources Information Center

    Nichols, Joe D.; Ludwin, William G.; Iadicola, Peter

    1999-01-01

    Studied school suspensions in a large metropolitan school district in which minority students were overrepresented in discipline reports. Study of suspensions at five middle schools and high schools shows inconsistent reporting of disciplinary and suspension data, making it difficult to quantify racial and class bias that appears to exist. (SLD)

  14. Erratum to: Automated Sample Preparation Method for Suspension Arrays using Renewable Surface Separations with Multiplexed Flow Cytometry Fluorescence Detection

    SciTech Connect

    Grate, Jay W.; Bruckner-Lea, Cindy J.; Jarrell, Ann E.; Chandler, Darrell P.

    2003-04-10

    In this paper we describe a new method of automated sample preparation for multiplexed biological analysis systems that use flow cytometry fluorescence detection. In this approach, color-encoded microspheres derivatized to capture particular biomolecules are temporarily trapped in a renewable surface separation column to enable perfusion with sample and reagents prior to delivery to the detector. This method provides for separation of the biomolecules of interest from other sample matrix components as well as from labeling solutions.

  15. WebArray: an online platform for microarray data analysis

    PubMed Central

    Xia, Xiaoqin; McClelland, Michael; Wang, Yipeng

    2005-01-01

    Background Many cutting-edge microarray analysis tools and algorithms, including commonly used limma and affy packages in Bioconductor, need sophisticated knowledge of mathematics, statistics and computer skills for implementation. Commercially available software can provide a user-friendly interface at considerable cost. To facilitate the use of these tools for microarray data analysis on an open platform we developed an online microarray data analysis platform, WebArray, for bench biologists to utilize these tools to explore data from single/dual color microarray experiments. Results The currently implemented functions were based on limma and affy package from Bioconductor, the spacings LOESS histogram (SPLOSH) method, PCA-assisted normalization method and genome mapping method. WebArray incorporates these packages and provides a user-friendly interface for accessing a wide range of key functions of limma and others, such as spot quality weight, background correction, graphical plotting, normalization, linear modeling, empirical bayes statistical analysis, false discovery rate (FDR) estimation, chromosomal mapping for genome comparison. Conclusion WebArray offers a convenient platform for bench biologists to access several cutting-edge microarray data analysis tools. The website is freely available at . It runs on a Linux server with Apache and MySQL. PMID:16371165

  16. Evaluation of Salt Influence on Sugar Consumption by Suspension Cells Based on Spectroscopic Analysis

    PubMed Central

    Kameoka, Takaharu; Hashimoto, Atsushi

    2013-01-01

    The influence of metal salt on sugar consumption by suspension cells in food models constructed by a sugar and salt aqueous solution was investigated based on mid-infrared spectroscopic analysis. The contaminated suspension cells in the food model could be detected using the spectral feature change that measured the present spectrum subtracted in the initial spectrum. The cells were prepared for growth and although the cell did not grow under the induction period, the cell activation (start of sugar metabolism) was detected on the subtracted spectral behavior before the cell growth. The rough grasp of the spectral change behavior is useful for the high-throughput spectroscopic method to detect the contaminated cell activation. Furthermore, the detailed sugar consumption kinetics of the cells was also investigated based on the spectroscopic method. The kind of added salt in the food model influenced the cell activation and the potassium ions play an important role in the plant cells. The living cells activity in fresh food may act to prevent microbial contamination and to suppress the growth of the contaminated microorganism. Both the simple and detailed analyses based on the spectroscopic method presented in this study might be useful for risk management of food. PMID:24490105

  17. [Determination of Azospirillum Brasilense Cells With Bacteriophages via Electrooptical Analysis of Microbial Suspensions].

    PubMed

    Gulii, O I; Karavayeva, O A; Pavlii, S A; Sokolov, O I; Bunin, V D; Ignatov, O V

    2015-01-01

    The dependence-of changes in the electrooptical properties of Azospirillum brasilense cell suspension Sp7 during interaction with bacteriophage ΦAb-Sp7 on the number and time of interactions was studied. Incubation of cells with bacteriophage significantly changed the electrooptical signal within one minute. The selective effect of bacteriophage ΦAb on 18 strains of bacteria of the genus Azospirillum was studied: A. amazonense Ami4, A. brasilense Sp7, Cd, Sp107, Sp245, Jm6B2, Brl4, KR77, S17, S27, SR55, SR75, A. halopraeferans Au4, A. irakense KBC1, K A3, A. lipoferum Sp59b, SR65 and RG20a. We determined the limit of reliable determination of microbial cells infected with bacteriophage: - 10(4) cells/mL. The presence of foreign cell cultures of E. coli B-878 and E. coli XL-1 did not complicate the detection of A brasilense Sp7 cells with the use of bacteriophage ΦAb-Sp7. The results demonstrated that bacteriophage (ΦAb-Sp7 can be used for the detection of Azospirillum microbial cells via t electrooptical analysis of cell suspensions.

  18. Raman spectroscopy for the process analysis of the manufacturing of a suspension metered dose inhaler.

    PubMed

    Butz, James; de la Cruz, Luis; DiTonno, Jason; DeBoyace, Kevin; Ewing, Gary; Donovan, Brent; Medendorp, Joseph

    2011-04-05

    The purpose of this research was to demonstrate the utility of Raman spectroscopy for process analysis of a suspension metered dose inhaler manufacturing process. Chemometric models were constructed for the quantification of ethanol and active pharmaceutical ingredient such that both could be monitored in real-time during the compounding and filling operations via tank measurements and recirculation line flow-cell measurements. Different spectral preprocessing techniques were used to delineate the effects of mixing speed and temperature changes from actual concentration effects. Raman spectroscopy offers advantages in time savings and quality of information over the standard methods of analysis for respiratory formulations, such as a drug content assay via HPLC and ethanol testing via GC. The successful implementation of this work will allow formulation scientists to quantitatively assess both the formulation (e.g., the concentration of active pharmaceutical ingredient (API) and ethanol), as well as the manufacturing process (e.g., determination of mixing endpoints) in real-time.

  19. Data analysis for the CHARA Array CLIMB beam combiner

    NASA Astrophysics Data System (ADS)

    ten Brummelaar, Theo A.; Sturmann, Judit; McAlister, Harold A.; Sturmann, Laszlo; Turner, Nils H.; Farrington, Chris D.; Schaefer, Gail; Goldfinger, P. J.; Kloppenborg, Brian

    2012-07-01

    The CHARA Array is a six telescope optical/IR interferometer run by the Center for High Angular Resolution Astronomy of Georgia State University and is located at Mount Wilson Observatory just to the north of Los Angeles California. The CHARA Array has the largest operational baselines in the world and has been in regular use for scientific observations since 2004. Our most sensitive beam combiner capable of measuring closure phases is the CLassic Interferometry with Multiple Baselines beam combiner known as CLIMB. In this paper we discuss the design and layout of CLIMB with a particular focus on the data analysis methodology. This analysis is presented in a very general form and will have applications in many other beam combiners. We also present examples of on sky data showing the precision and stability of both amplitude and closure phase measurements.

  20. Guidelines for Optimisation of a Multiplex Oligonucleotide Ligation-PCR for Characterisation of Microbial Pathogens in a Microsphere Suspension Array

    PubMed Central

    Wuyts, Véronique; Roosens, Nancy H. C.; Marchal, Kathleen; De Keersmaecker, Sigrid C. J.

    2015-01-01

    With multiplex oligonucleotide ligation-PCR (MOL-PCR) different molecular markers can be simultaneously analysed in a single assay and high levels of multiplexing can be achieved in high-throughput format. As such, MOL-PCR is a convenient solution for microbial detection and identification assays where many markers should be analysed, including for routine further characterisation of an identified microbial pathogenic isolate. For an assay aimed at routine use, optimisation in terms of differentiation between positive and negative results and of cost and effort is indispensable. As MOL-PCR includes a multiplex ligation step, followed by a singleplex PCR and analysis with microspheres on a Luminex device, several parameters are accessible for optimisation. Although MOL-PCR performance may be influenced by the markers used in the assay and the targeted bacterial species, evaluation of the method of DNA isolation, the probe concentration, the amount of microspheres, and the concentration of reporter dye is advisable in the development of any MOL-PCR assay. Therefore, we here describe our observations made during the optimisation of a 20-plex MOL-PCR assay for subtyping of Salmonella Typhimurium with the aim to provide a possible workflow as guidance for the development and optimisation of a MOL-PCR assay for the characterisation of other microbial pathogens. PMID:25705689

  1. Array-Pattern-Match Compiler for Opportunistic Data Analysis

    NASA Technical Reports Server (NTRS)

    James, Mark

    2006-01-01

    A computer program has been written to facilitate real-time sifting of scientific data as they are acquired to find data patterns deemed to warrant further analysis. The patterns in question are of a type denoted array patterns, which are specified by nested parenthetical expressions. [One example of an array pattern is ((>3) 0 (not=1)): this pattern matches a vector of at least three elements, the first of which exceeds 3, the second of which is 0, and the third of which does not equal 1.] This program accepts a high-level description of a static array pattern and compiles a highly optimal and compact other program to determine whether any given instance of any data array matches that pattern. The compiler implemented by this program is independent of the target language, so that as new languages are used to write code that processes scientific data, they can easily be adapted to this compiler. This program runs on a variety of different computing platforms. It must be run in conjunction with any one of a number of Lisp compilers that are available commercially or as shareware.

  2. Advanced spectral analysis of ionospheric waves observed with sparse arrays

    NASA Astrophysics Data System (ADS)

    Helmboldt, J. F.; Intema, H. T.

    2014-02-01

    This paper presents a case study from a single, 6h observing period to illustrate the application of techniques developed for interferometric radio telescopes to the spectral analysis of observations of ionospheric fluctuations with sparse arrays. We have adapted the deconvolution methods used for making high dynamic range images of cosmic sources with radio arrays to making comparably high dynamic range maps of spectral power of wavelike ionospheric phenomena. In the example presented here, we have used observations of the total electron content (TEC) gradient derived from Very Large Array (VLA) observations of synchrotron emission from two galaxy clusters at 330MHz as well as GPS-based TEC measurements from a sparse array of 33 receivers located within New Mexico near the VLA. We show that these techniques provide a significant improvement in signal-to-noise ratio (S/N) of detected wavelike structures by correcting for both measurement inaccuracies and wavefront distortions. This is especially true for the GPS data when combining all available satellite/receiver pairs, which probe a larger physical area and likely have a wider variety of measurement errors than in the single-satellite case. In this instance, we found that the peak S/N of the detected waves was improved by more than an order of magnitude. The data products generated by the deconvolution procedure also allow for a reconstruction of the fluctuations as a two-dimensional waveform/phase screen that can be used to correct for their effects.

  3. Single cell array impedance analysis in a microfluidic device

    NASA Astrophysics Data System (ADS)

    Altinagac, Emre; Taskin, Selen; Kizil, Huseyin

    2016-10-01

    Impedance analysis of single cells is presented in this paper. Following the separation of a target cell type by dielectrophoresis in our previous work, this paper focuses on capturing the cells as a single array and performing impedance analysis to point out the signature difference between each cell type. Lab-on-a-chip devices having a titanium interdigitated electrode layer on a glass substrate and a PDMS microchannel are fabricated to capture each cell in a single form and perform impedance analysis. HCT116 (homosapiens colon colorectal carcin) and HEK293 (human embryonic kidney) cells are used in our experiments.

  4. Improvements in analysis techniques for segmented mirror arrays

    NASA Astrophysics Data System (ADS)

    Michels, Gregory J.; Genberg, Victor L.; Bisson, Gary R.

    2016-08-01

    The employment of actively controlled segmented mirror architectures has become increasingly common in the development of current astronomical telescopes. Optomechanical analysis of such hardware presents unique issues compared to that of monolithic mirror designs. The work presented here is a review of current capabilities and improvements in the methodology of the analysis of mechanically induced surface deformation of such systems. The recent improvements include capability to differentiate surface deformation at the array and segment level. This differentiation allowing surface deformation analysis at each individual segment level offers useful insight into the mechanical behavior of the segments that is unavailable by analysis solely at the parent array level. In addition, capability to characterize the full displacement vector deformation of collections of points allows analysis of mechanical disturbance predictions of assembly interfaces relative to other assembly interfaces. This capability, called racking analysis, allows engineers to develop designs for segment-to-segment phasing performance in assembly integration, 0g release, and thermal stability of operation. The performance predicted by racking has the advantage of being comparable to the measurements used in assembly of hardware. Approaches to all of the above issues are presented and demonstrated by example with SigFit, a commercially available tool integrating mechanical analysis with optical analysis.

  5. Light-generated oligonucleotide arrays for rapid DNA sequence analysis.

    PubMed Central

    Pease, A C; Solas, D; Sullivan, E J; Cronin, M T; Holmes, C P; Fodor, S P

    1994-01-01

    In many areas of molecular biology there is a need to rapidly extract and analyze genetic information; however, current technologies for DNA sequence analysis are slow and labor intensive. We report here how modern photolithographic techniques can be used to facilitate sequence analysis by generating miniaturized arrays of densely packed oligonucleotide probes. These probe arrays, or DNA chips, can then be applied to parallel DNA hybridization analysis, directly yielding sequence information. In a preliminary experiment, a 1.28 x 1.28 cm array of 256 different octanucleotides was produced in 16 chemical reaction cycles, requiring 4 hr to complete. The hybridization pattern of fluorescently labeled oligonucleotide targets was then detected by epifluorescence microscopy. The fluorescence signals from complementary probes were 5-35 times stronger than those with single or double base-pair hybridization mismatches, demonstrating specificity in the identification of complementary sequences. This method should prove to be a powerful tool for rapid investigations in human genetics and diagnostics, pathogen detection, and DNA molecular recognition. Images PMID:8197176

  6. Morphology Analysis of Si Island Arrays on Si(001)

    PubMed Central

    2010-01-01

    The formation of nanometer-scale islands is an important issue for bottom-up-based schemes in novel electronic, optoelectronic and magnetoelectronic devices technology. In this work, we present a detailed atomic force microscopy analysis of Si island arrays grown by molecular beam epitaxy. Recent reports have shown that self-assembled distributions of fourfold pyramid-like islands develop in 5-nm thick Si layers grown at substrate temperatures of 650 and 750°C on HF-prepared Si(001) substrates. Looking for wielding control and understanding the phenomena involved in this surface nanostructuring, we develop and apply a formalism that allows for processing large area AFM topographic images in a shot, obtaining surface orientation maps with specific information on facets population. The procedure reveals some noticeable features of these Si island arrays, e.g. a clear anisotropy of the in-plane local slope distributions. Total island volume analysis also indicates mass transport from the substrate surface to the 3D islands, a process presumably related to the presence of trenches around some of the pyramids. Results are discussed within the framework of similar island arrays in homoepitaxial and heteroepitaxial semiconductor systems. PMID:21170139

  7. Morphology Analysis of Si Island Arrays on Si(001)

    NASA Astrophysics Data System (ADS)

    González-González, A.; Alonso, M.; Navarro, E.; Sacedón, J. L.; Ruiz, A.

    2010-12-01

    The formation of nanometer-scale islands is an important issue for bottom-up-based schemes in novel electronic, optoelectronic and magnetoelectronic devices technology. In this work, we present a detailed atomic force microscopy analysis of Si island arrays grown by molecular beam epitaxy. Recent reports have shown that self-assembled distributions of fourfold pyramid-like islands develop in 5-nm thick Si layers grown at substrate temperatures of 650 and 750°C on HF-prepared Si(001) substrates. Looking for wielding control and understanding the phenomena involved in this surface nanostructuring, we develop and apply a formalism that allows for processing large area AFM topographic images in a shot, obtaining surface orientation maps with specific information on facets population. The procedure reveals some noticeable features of these Si island arrays, e.g. a clear anisotropy of the in-plane local slope distributions. Total island volume analysis also indicates mass transport from the substrate surface to the 3D islands, a process presumably related to the presence of trenches around some of the pyramids. Results are discussed within the framework of similar island arrays in homoepitaxial and heteroepitaxial semiconductor systems.

  8. Morphology Analysis of Si Island Arrays on Si(001).

    PubMed

    González-González, A; Alonso, M; Navarro, E; Sacedón, J L; Ruiz, A

    2010-08-11

    The formation of nanometer-scale islands is an important issue for bottom-up-based schemes in novel electronic, optoelectronic and magnetoelectronic devices technology. In this work, we present a detailed atomic force microscopy analysis of Si island arrays grown by molecular beam epitaxy. Recent reports have shown that self-assembled distributions of fourfold pyramid-like islands develop in 5-nm thick Si layers grown at substrate temperatures of 650 and 750°C on HF-prepared Si(001) substrates. Looking for wielding control and understanding the phenomena involved in this surface nanostructuring, we develop and apply a formalism that allows for processing large area AFM topographic images in a shot, obtaining surface orientation maps with specific information on facets population. The procedure reveals some noticeable features of these Si island arrays, e.g. a clear anisotropy of the in-plane local slope distributions. Total island volume analysis also indicates mass transport from the substrate surface to the 3D islands, a process presumably related to the presence of trenches around some of the pyramids. Results are discussed within the framework of similar island arrays in homoepitaxial and heteroepitaxial semiconductor systems.

  9. Performance bounds for modal analysis using sparse linear arrays

    NASA Astrophysics Data System (ADS)

    Li, Yuanxin; Pezeshki, Ali; Scharf, Louis L.; Chi, Yuejie

    2017-05-01

    We study the performance of modal analysis using sparse linear arrays (SLAs) such as nested and co-prime arrays, in both first-order and second-order measurement models. We treat SLAs as constructed from a subset of sensors in a dense uniform linear array (ULA), and characterize the performance loss of SLAs with respect to the ULA due to using much fewer sensors. In particular, we claim that, provided the same aperture, in order to achieve comparable performance in terms of Cramér-Rao bound (CRB) for modal analysis, SLAs require more snapshots, of which the number is about the number of snapshots used by ULA times the compression ratio in the number of sensors. This is shown analytically for the case with one undamped mode, as well as empirically via extensive numerical experiments for more complex scenarios. Moreover, the misspecified CRB proposed by Richmond and Horowitz is also studied, where SLAs suffer more performance loss than their ULA counterpart.

  10. Array-CGH analysis of cutaneous anaplastic large cell lymphoma.

    PubMed

    Szuhai, K; van Doorn, R; Tensen, C P; Van Kester

    2013-01-01

    This chapter describes a study in which the pattern of numerical chromosomal alterations in cutaneous anaplastic large cell lymphoma (C-ALCL) tumor samples was defined using array-based comparative genomic hybridization (CGH). First, the array-based CGH technique applied is outlined in detail. Next, its application in the analysis of C-ALCL tumor specimens is described. This approach resulted in the identification of highly recurrent chromosomal alterations in C-ALCL that include gain of 7q31 and loss on 6q16-6q21 and 13q34, each affecting 45% of the patients. The pattern characteristic of C-ALCL differs markedly from chromosomal alterations observed in other CTCL such as mycosis fungoides and Sézary syndrome and yielded several candidate genes with potential relevance in the pathogenesis of C-ALCL.

  11. Digital control analysis and design of a field-sensed magnetic suspension system.

    PubMed

    Li, Jen-Hsing; Chiou, Juing-Shian

    2015-03-13

    Magnetic suspension systems are mechatronic systems and crucial in several engineering applications, such as the levitation of high-speed trains, frictionless bearings, and wind tunnels. Magnetic suspension systems are nonlinear and unstable systems; therefore, they are suitable educational benchmarks for testing various modeling and control methods. This paper presents the digital modeling and control of magnetic suspension systems. First, the magnetic suspension system is stabilized using a digital proportional-derivative controller. Subsequently, the digital model is identified using recursive algorithms. Finally, a digital mixed linear quadratic regulator (LQR)/H∞ control is adopted to stabilize the magnetic suspension system robustly. Simulation examples and a real-world example are provided to demonstrate the practicality of the study results. In this study, a digital magnetic suspension system model was developed and reviewed. In addition, equivalent state and output feedback controls for magnetic suspension systems were developed. Using this method, the controller design for magnetic suspension systems was simplified, which is the novel contribution of this study. In addition, this paper proposes a complete digital controller design procedure for magnetic suspension systems.

  12. Digital Control Analysis and Design of a Field-Sensed Magnetic Suspension System

    PubMed Central

    Li, Jen-Hsing; Chiou, Juing-Shian

    2015-01-01

    Magnetic suspension systems are mechatronic systems and crucial in several engineering applications, such as the levitation of high-speed trains, frictionless bearings, and wind tunnels. Magnetic suspension systems are nonlinear and unstable systems; therefore, they are suitable educational benchmarks for testing various modeling and control methods. This paper presents the digital modeling and control of magnetic suspension systems. First, the magnetic suspension system is stabilized using a digital proportional-derivative controller. Subsequently, the digital model is identified using recursive algorithms. Finally, a digital mixed linear quadratic regulator (LQR)/H∞ control is adopted to stabilize the magnetic suspension system robustly. Simulation examples and a real-world example are provided to demonstrate the practicality of the study results. In this study, a digital magnetic suspension system model was developed and reviewed. In addition, equivalent state and output feedback controls for magnetic suspension systems were developed. Using this method, the controller design for magnetic suspension systems was simplified, which is the novel contribution of this study. In addition, this paper proposes a complete digital controller design procedure for magnetic suspension systems. PMID:25781508

  13. Assessment of exposure to piroplasms in sheep grazing in communal mountain pastures by using a multiplex DNA bead-based suspension array

    PubMed Central

    2013-01-01

    Background Piroplasms are tick-borne hemoprotozoans with a major impact on extensive management systems. Detection of sub-clinical low-level carriers, which can act as source of infection for vector ticks, is key to protect livestock trade and facilitate preventive control programs. The purpose of this study was to develop a method for the detection of ovine piroplasms and to use it in a field study aimed at investigating piroplasms infection in semi-extensive production systems in the Basque Country (northern Spain). Methods A DNA bead-based suspension array using the Luminex® xMAP technology that included a generic Theileria-Babesia control probe, 6 species-specific probes, and an internal control probe was developed to detect and identify piroplasms that infect sheep. To monitor piroplasm infection in clinically healthy sheep from 4 flocks that share communal mountain pastures, blood samples were collected during 2 grazing seasons. Results Piroplasms were detected in 48% (214/446) of blood samples, nearly half of them (49.1%, 105/214) as mixed infections. Five different piroplasms were identified: Theileria sp. OT3 in 34.8% of the samples, Theileria ovis in 20.9%, and at lower prevalences Babesia motasi (12.3%), Theileria luwenshuni/OT1 (10.5%) and Babesia ovis (6.3%). Despite differences among flocks associated to differences in management, an increasing trend in the incidence of piroplasm infection with increasing age of animals after increased tick exposure was observed. This increment could be attributed to continued re-infection associated with re-exposure to ticks at grazing. Ticks were collected from animals (4 species) and vegetation (8 species), and associations between tick abundance seasonality and risk of infection with the different piroplasms were established. Conclusion The multiplex Luminex® xMAP procedure is a rapid and high throughput technique that provided highly specific and sensitive identification of single and mixed piroplasm infections

  14. Preparation of single cells from aggregated Taxus suspension cultures for population analysis.

    PubMed

    Naill, Michael C; Roberts, Susan C

    2004-06-30

    A method for the isolation of single plant cells from Taxus suspension cultures has been developed for the analysis of single cells via rapid throughput techniques such as flow cytometry. Several cell wall specific enzymes, such as pectinase, pectolyase Y-23, macerozyme, Driselase(R), and cellulase were tested for efficacy in producing single cell suspensions. The method was optimized for single cell yield, viability, time, and representivity of aggregated cell cultures. The best combination for single cell isolation was found to be 0.5% (w/v) pectolyase Y-23 and 0.04% (w/v) cellulase. High viability (>95%) and high yields of single cell aggregates (>90%) were obtained following 4 hours of digestion for four separate Taxus cell lines. In addition, methyl jasmonate elicitation (200 microM) was found to have no effect on three of the four tested Taxus lines. Isolated single cells were statistically similar to untreated cell cultures for peroxidase activity (model cell wall protein) and paclitaxel content (secondary metabolite produced in Taxus cell cultures). In comparison, protoplasts showed marked changes in both peroxidase activity and paclitaxel content as compared to untreated cultures. The use of flow cytometry was demonstrated with isolated cells that were found to have > 99% viability upon staining with fluorescein diacetate. The development of a method for the isolation of single plant cells will allow the study of population dynamics and culture variability on a single cell level for the development of population models of plant cell cultures and secondary metabolism. Copyright 2004 Wiley Periodicals, Inc.

  15. Analysis of Semi-Active and Passive Suspensions System for Off-Road Vehicles

    NASA Astrophysics Data System (ADS)

    BenLahcene, Zohir; Faris, Waleed F.; Khan, M. D. Raisuddin

    2009-03-01

    The speed of off-road vehicles over rough terrain is generally determined by the ride quality not by the engine power. For this reason, researches are currently being undertaking to improve the ride dynamics of these vehicles using an advanced suspension system. This study intends to provide a preliminary evaluation of whether semi-active suspensions are beneficial to improving ride and handling in off-road vehicles. One of the greatest challenges in designing off-road vehicle suspension system is maintaining a good balance between vehicle ride and handling. Three configurations of these vehicles; 2-axle, 3-xle and 4-axles have been studied and their performances are compared. The application of several control policies of semi-active suspension system, namely skyhook; ground-hook and hybrid controls have been analyzed and compared with passive systems. The results show that the hybrid control policy yields better comfort than a passive suspension, without reducing the road-holding quality or increasing the suspension displacement. The hybrid control policy is also shown to be a better compromise between comfort, road-holding and suspension displacement than the skyhook and ground-hook control policies. Results show an improvement in ride comfort and vehicle handling using 4-axle over 3-axle and 2-axle when emphasis is placed on the response of the vehicle body acceleration, suspension and tyre deflection.

  16. DNA array analysis in a Microsoft Windows environment.

    PubMed

    Conway, T; Kraus, B; Tucker, D L; Smalley, D J; Dorman, A F; McKibben, L

    2002-01-01

    Microsoft Windows-based computers have evolved to the point that they provide sufficient computational and visualization power for robust analysis of DNA array data. In fact, smaller laboratories might prefer to carry out some or all of their analyses and visualization in a Windows environment, rather than alternative platforms such as UNIX. We have developed a series of manually executed macros written in Visual Basic for Microsoft Excel spreadsheets, that allows for rapid and comprehensive gene expression data analysis. The first macro assigns gene names to spots on the DNA array and normalizes individual hybridizations by expressing the signal intensity for each gene as a percentage of the sum of all gene intensities. The second macro streamlines statistical consideration of the confidence in individual gene measurements for sets of experimental replicates by calculating probability values with the Student's t test. The third macro introduces a threshold value, calculates expression ratios between experimental conditions, and calculates the standard deviation of the mean of the log ratio values. Selected columns of data are copied by a fourth macro to create a processed data set suitable for entry into a Microsoft Access database. An Access database structure is described that allows simple queries across multiple experiments and export of data into third-party data visualization software packages. These analysis tools can be used in their present form by others working with commercial E. coli membrane arrays, or they may be adapted for use with other systems. The Excel spreadsheets with embedded Visual Basic macros and detailed instructions for their use are available at http://www.ou.edu/microarray.

  17. Suspension Geometry Measuring

    NASA Astrophysics Data System (ADS)

    Kao, M. J.; Yu, C. C.; Chang, H.; Tsung, T. T.; Lin, H. M.

    2006-10-01

    This paper describes the instrumentation and analysis of the Vehicle suspension's electrical signals. It will measure the Vehicle suspensions' Vertical Displacement, Track Change, Camber Angle, Caster Angle Steer Angle and convert physical quantity into electrical signals in a various vehicle load change. With using electrical signals for computer control, the electrical controlled vehicle has brought great convenience, great safety and thoughtful kindness vehicle system in our daily life. It will measure the Vehicle suspensions' Vertical Displacement, Track Change, Camber Angle, Caster Angle Steer Angle and convert physical quantity into electrical signals in a various vehicle load change. The function of a suspension system in an automobile is to improve ride comfort and stability. Advances in electronic control technology, applied to the automobile, can improve those functions. The results show that the photocell can convert the electrical signals of suspension for peripheral communications link between the vehicle driving and the electronic control unit (ECU) employed for processing.

  18. Spectral Cytometry Has Unique Properties Allowing Multicolor Analysis of Cell Suspensions Isolated from Solid Tissues

    PubMed Central

    Schmutz, Sandrine; Valente, Mariana

    2016-01-01

    Flow cytometry, initially developed to analyze surface protein expression in hematopoietic cells, has increased in analytical complexity and is now widely used to identify cells from different tissues and organisms. As a consequence, data analysis became increasingly difficult due the need of large multi-parametric compensation matrices and to the eventual auto-fluorescence frequently found in cell suspensions obtained from solid organs. In contrast with conventional flow cytometry that detects the emission peak of fluorochromes, spectral flow cytometry distinguishes the shapes of emission spectra along a large range of continuous wave lengths. The data is analyzed with an algorithm that replaces compensation matrices and treats auto-fluorescence as an independent parameter. Thus, spectral flow cytometry should be capable to discriminate fluorochromes with similar emission peaks and provide multi-parametric analysis without compensation requirements. Here we show that spectral flow cytometry achieves a 21-parametric (19 fluorescent probes) characterization and deals with auto-fluorescent cells, providing high resolution of specifically fluorescence-labeled populations. Our results showed that spectral flow cytometry has advantages in the analysis of cell populations of tissues difficult to characterize in conventional flow cytometry, such as heart and intestine. Spectral flow cytometry thus combines the multi-parametric analytical capacity of the highest performing conventional flow cytometry without the requirement for compensation and enabling auto-fluorescence management. PMID:27500930

  19. Thermal Sensor Arrays for The Combinatorial Analysis of Thin Films

    NASA Astrophysics Data System (ADS)

    McCluskey, Patrick James

    2011-12-01

    Membrane-based thermal sensor arrays were developed for the high-throughput analysis of the thermophysical properties of thin films. The continuous growth of integrated circuits and microelectromechanical systems, as well as the development of functional materials and the optimization of materials properties, have produced the need for instruments capable of fast materials screening and analysis at reduced length scales. Two instruments were developed based on a similar architecture, one to measure thermal transport properties and the other to perform calorimetry measurements. Both have the capability to accelerate the pace of materials development and understanding using combinatorial measurement methods. The shared architecture of the instruments consists of a silicon-based micromachined array of thermal sensors. Each sensor consists of a SiN X membrane and a W heating element that also serves as a temperature gauge. The array design allows the simultaneous creation of a library of thin film samples by various deposition techniques while systematically varying a parameter of interest across the device. The membrane-based sensors have little thermal mass making them extremely sensitive to changes in thermal energy. The nano-thermal transport array has an array of sensors optimized for sensitivity to heat loss. The heat loss is determined from the temperature response of the sensor to an applied current. An analytical model is used with a linear regression analysis to fit the thermal properties of the samples to the temperature response. The assumptions of the analytical model are validated with a finite element model. Measured thermal properties include specific heat, thermal effusivity, thermal conductivity, and emissivity. The technique is demonstrated by measuring the thermal transport properties of sputter deposited Cu multilayers with a total film thickness from 15 to 470 nm. The experimental results compare well to a theory based on electronic thermal

  20. Pulsar timing array analysis for black hole backgrounds

    NASA Astrophysics Data System (ADS)

    Cornish, Neil J.; Sesana, A.

    2013-11-01

    An astrophysical population of supermassive black hole binaries is thought to be the strongest source of gravitational waves in the frequency range covered by pulsar timing arrays (PTAs). A potential cause for concern is that the standard cross-correlation method used in PTA data analysis assumes that the signals are isotropically distributed and Gaussian random, while the signals from a black hole population are likely to be anisotropic and deterministic. Here we show that while the conventional analysis is not optimal for detecting signals from black hole binaries, the technique still works as the standard Hellings-Downs correlation curve turns out to hold for point sources. Moreover, the small effective number of signal samples blurs the distinction between Gaussian and deterministic signals. Possible improvements to the standard cross-correlation analysis that account for the anisotropy of the signal are discussed.

  1. Cluster Computing For Real Time Seismic Array Analysis.

    NASA Astrophysics Data System (ADS)

    Martini, M.; Giudicepietro, F.

    A seismic array is an instrument composed by a dense distribution of seismic sen- sors that allow to measure the directional properties of the wavefield (slowness or wavenumber vector) radiated by a seismic source. Over the last years arrays have been widely used in different fields of seismological researches. In particular they are applied in the investigation of seismic sources on volcanoes where they can be suc- cessfully used for studying the volcanic microtremor and long period events which are critical for getting information on the volcanic systems evolution. For this reason arrays could be usefully employed for the volcanoes monitoring, however the huge amount of data produced by this type of instruments and the processing techniques which are quite time consuming limited their potentiality for this application. In order to favor a direct application of arrays techniques to continuous volcano monitoring we designed and built a small PC cluster able to near real time computing the kinematics properties of the wavefield (slowness or wavenumber vector) produced by local seis- mic source. The cluster is composed of 8 Intel Pentium-III bi-processors PC working at 550 MHz, and has 4 Gigabytes of RAM memory. It runs under Linux operating system. The developed analysis software package is based on the Multiple SIgnal Classification (MUSIC) algorithm and is written in Fortran. The message-passing part is based upon the LAM programming environment package, an open-source imple- mentation of the Message Passing Interface (MPI). The developed software system includes modules devote to receiving date by internet and graphical applications for the continuous displaying of the processing results. The system has been tested with a data set collected during a seismic experiment conducted on Etna in 1999 when two dense seismic arrays have been deployed on the northeast and the southeast flanks of this volcano. A real time continuous acquisition system has been simulated by

  2. Head movement: a novel serotonin-sensitive behavioral endpoint for tail suspension test analysis.

    PubMed

    Lockridge, Amber; Newland, Brett; Printen, Spencer; Romero, Gabriel E; Yuan, Li-Lian

    2013-06-01

    The tail suspension test (TST) as an antidepressant and depression-related behavior screen, has many advantages over the forced swim test (FST) in terms of procedural simplicity and consistent SSRI response. However, the FST has traditionally offered more specific neuromodulatory information by differentiating between serotonin (5-HT) and norepinephrine sensitive behavior categories. Head movement is a newly characterized behavior endpoint in the FST and TST with a selective 5-HT sensitivity. In this investigation, we show that the baseline and drug response profile of head movement previously found in the 129S6 strain of mice (Lockridge et al., 2010) is reproducible in the C57 strain. Head movement is inversely correlated to FST swimming and elevated in the TST by SSRI administration. The use of a weighted bin sample analysis method differentiates TST behaviors into fluoxetine-responsive head movement and desipramine-responsive struggling. The use of 5-HT subtype receptor agonists, after depleting endogenous 5-HT with pCPA, shows the head movement suppressing effect of 5-HT2A and 5-HT2C postsynaptic receptor activation. 5-HT1A and 5-HT1B agonists were ineffective. We propose that a head movement focused analysis can add sensitive and reliable 5-HT detection capability to mouse TST testing with minimal effort but significant reward.

  3. Analysis of the static magnetic field-dependent optical transmission of Ni nanorod colloidal suspensions

    SciTech Connect

    Krämer, Florian; Gratz, Micha; Tschöpe, Andreas

    2016-07-28

    The magnetic field-dependent optical transmission of dilute Ni nanorod aqueous suspensions was investigated. A series of four samples of nanorods were synthesized using the AAO template method and processed to stable colloids. The distributions of their length and diameter were characterized by analysis of TEM images and revealed average diameters of ∼25 nm and different lengths in the range of 60 nm–1100 nm. The collinear magnetic and optical anisotropy was studied by static field-dependent transmission measurements of linearly polarized light parallel and perpendicular to the magnetic field direction. The experimental results were modelled assuming the field-dependent orientation distribution function of a superparamagnetic ensemble for the uniaxial ferromagnetic nanorods in liquid dispersion and extinction cross sections for longitudinal and transversal optical polarization derived from different approaches, including the electrostatic approximation and the separation of variables method, both applied to spheroidal particles, as well as finite element method simulations of spheroids and capped cylindrical particles. The extinction cross sections were compared to reveal the differences associated with the approximations of homogeneous polarization and/or particle shape. The consequences of these approximations for the quantitative analysis of magnetic field-dependent optical transmission measurements were investigated and a reliable protocol derived. Furthermore, the changes in optical cross sections induced by electromagnetic interaction between two nanorods in parallel end-to-end and side-by-side configuration as a function of their separation were studied.

  4. BUDGET IMPACT ANALYSIS OF USING OMEPRAZOLE IMMEDIATE-RELEASE ORAL SUSPENSION IN REPLACE OF INTRAVENOUS PANTOPRAZOLE IN CRITICALLY ILL PATIENTS.

    PubMed

    Foroutan, Naghmeh; Fahimi, Fanak; Dabiri, Yasamin; Foroutan, Arash; Habibi, Maryam; Salamzadeh, Jamshid

    2015-12-31

    The aim of the present study was to estimate the financial consequence of using omeprazole immediate-release (IR) oral suspension versus pantoprazole intravenous infusion for preventing stress-related upper gastrointestinal bleeding in critically ill patients from the perspective of the health care system. An Excel-based model was developed to compare the cost of prevention of upper gastrointestinal bleeding early after intensive care admission using the current intravenous (IV) pantoprazole formulation versus omeprazole IR oral suspension. Total costs included the cost of acid suppressive drugs and related clinical outcomes. Inputs were obtained from a local clinical trial, the Ministry of Health database, insurance organizations, hospital and pharmacy registries, the relevant literature, and expert opinion. The robustness of the input data was investigated by one-way sensitivity analysis. The model was developed based on the results of a randomized control trial (RCT), in which experimental and control groups received omeprazole and pantoprazole, respectively. According to the proposed model, the cost of gastrointestinal (GI) bleeding prevention using pantoprazole IV was US$ 950,000 while US$ 750,000 was spent on receiving omeprazole oral suspension. These costs led to the annual cost-saving of almost US$ 200,000 (US$4 per member, per month) for the health care system. In the present study, a budget impact analysis was performed to assess the financial consequences of using omeprazole IR oral suspension in place of pantoprazole IV for prevention of upper gastrointestinal bleeding. The better preventive effect of omeprazole IR oral suspension when compared with conventional therapy using pantoprazole IV was the major reason for the final comparative budgetary savings.

  5. Analysis of Anionic Polymer Dispersant Behavior in Dense Silicon Nitride and Carbide Suspensions Using an AFM

    NASA Astrophysics Data System (ADS)

    Nojiri, M.; Matsui, S.; Hasegawa, H.; Ono, T.; Fukuda, Y.; Tsukada, M.; Kamiya, H.

    2001-06-01

    The paper focuses on the interaction mechanism caused by anionic polymer dispersants in dense silicon nitride and silicon carbide suspensions. An atomic force microscope (AFM) was used to determine the relationship between the macroscopic suspension viscosity and the microscopic structure adsorbing of a polymer dispersant at the solid/liquid interface. The surface interactions within the suspensions were analyzed under various dispersant pH values and additive conditions. The addition of an anionic polymer dispersant decreased the viscosity of silicon nitride and silicon carbide suspension and increased the electrosteric repulsive force on the non-oxide surface in solution at pH > 6, which was the isoelectric point of the materials. Based on the above results, we estimated the adsorption mechanism of anionic polymer dispersants on each solid surface in solution under relatively high pH conditions.

  6. Topological analysis for designing a suspension of the Hénon map

    NASA Astrophysics Data System (ADS)

    Mangiarotti, Sylvain; Letellier, Christophe

    2015-12-01

    A suspension of a map consists of the flow for which the Poincaré section is that map. Designing a suspension of a given map remains a non-trivial task in general. The case of suspending the Hénon map is here considered. Depending on the parameter values, the Hénon map is orientation preserving or reversing; it is here shown that while a tridimensional suspension can be obtained in the former case, a four-dimensional flow is required to suspend the latter. A topological characterization of the three-dimensional suspension proposed by Starrett and Nicholas for the orientation preserving area is performed. A template is proposed for the four-dimensional case, for which the governing equations remain to be obtained.

  7. Experimental Study of Membrane Fouling during Crossflow Microfiltration of Yeast and Bacteria Suspensions: Towards an Analysis at the Microscopic Level

    PubMed Central

    Ben Hassan, Ines; Ennouri, Monia; Lafforgue, Christine; Schmitz, Philippe; Ayadi, Abdelmoneim

    2013-01-01

    Microfiltration of model cell suspensions combining macroscopic and microscopic approaches was studied in order to better understand microbial membrane fouling mechanisms. The respective impact of Saccharomyces cerevisiae yeast and Escherichia coli bacteria on crossflow microfiltration performances was investigated using a multichannel ceramic 0.2 µm membrane. Pure yeast suspensions (5 µm ovoid cells) and mixtures of yeast and bacteria (1 to 2.5 µm rod shape cells) were considered in order to analyse the effect of interaction between these two microorganisms on fouling reversibility. The resistances varied significantly with the concentration and characteristics of the microorganisms. Membrane fouling with pure yeast suspension was mainly reversible. For yeast and bacteria mixed suspensions (6 g L−1 yeast concentration) the increase in bacteria from 0.15 to 0.30 g L−1 increased the percentage of normalized reversible resistance. At 10 g L−1 yeast concentration, the addition of bacteria tends to increase the percentage of normalized irreversible resistance. For the objective of performing local analysis of fouling, an original filtration chamber allowing direct in situ observation of the cake by confocal laser scanning microscopy (CLSM) was designed, developed and validated. This device will be used in future studies to characterize cake structure at the microscopic scale. PMID:24958619

  8. Experimental Study of Membrane Fouling during Crossflow Microfiltration of Yeast and Bacteria Suspensions: Towards an Analysis at the Microscopic Level.

    PubMed

    Hassan, Ines Ben; Ennouri, Monia; Lafforgue, Christine; Schmitz, Philippe; Ayadi, Abdelmoneim

    2013-05-10

    Microfiltration of model cell suspensions combining macroscopic and microscopic approaches was studied in order to better understand microbial membrane fouling mechanisms. The respective impact of Saccharomyces cerevisiae yeast and Escherichia coli bacteria on crossflow microfiltration performances was investigated using a multichannel ceramic 0.2 µm membrane. Pure yeast suspensions (5 µm ovoid cells) and mixtures of yeast and bacteria (1 to 2.5 µm rod shape cells) were considered in order to analyse the effect of interaction between these two microorganisms on fouling reversibility. The resistances varied significantly with the concentration and characteristics of the microorganisms. Membrane fouling with pure yeast suspension was mainly reversible. For yeast and bacteria mixed suspensions (6 g L-1 yeast concentration) the increase in bacteria from 0.15 to 0.30 g L-1 increased the percentage of normalized reversible resistance. At 10 g L-1 yeast concentration, the addition of bacteria tends to increase the percentage of normalized irreversible resistance. For the objective of performing local analysis of fouling, an original filtration chamber allowing direct in situ observation of the cake by confocal laser scanning microscopy (CLSM) was designed, developed and validated. This device will be used in future studies to characterize cake structure at the microscopic scale.

  9. Clustering and Network Analysis of Reverse Phase Protein Array Data.

    PubMed

    Byron, Adam

    2017-01-01

    Molecular profiling of proteins and phosphoproteins using a reverse phase protein array (RPPA) platform, with a panel of target-specific antibodies, enables the parallel, quantitative proteomic analysis of many biological samples in a microarray format. Hence, RPPA analysis can generate a high volume of multidimensional data that must be effectively interrogated and interpreted. A range of computational techniques for data mining can be applied to detect and explore data structure and to form functional predictions from large datasets. Here, two approaches for the computational analysis of RPPA data are detailed: the identification of similar patterns of protein expression by hierarchical cluster analysis and the modeling of protein interactions and signaling relationships by network analysis. The protocols use freely available, cross-platform software, are easy to implement, and do not require any programming expertise. Serving as data-driven starting points for further in-depth analysis, validation, and biological experimentation, these and related bioinformatic approaches can accelerate the functional interpretation of RPPA data.

  10. Airborne electronically steerable phased array. [steerable antennas - systems analysis

    NASA Technical Reports Server (NTRS)

    Coats, R.

    1975-01-01

    Results of a study directed to the design of a lightweight high-gain, spaceborne communications array are presented. The array includes simultaneous transmission and receiving, automatic acquisition and tracking of a signal within a 60-degree cone from the array normal, and provides for independent forming of the transmit and receive beams. Application for this array is the space shuttle, space station, or any of the advanced manned (or unmanned) orbital vehicles. Performance specifications are also given.

  11. Phased Array Antenna Analysis Using Hybrid Finite Element Methods

    DTIC Science & Technology

    1993-06-01

    Waveguide ; (b) Geometry Model for Method of Moments ........................ 4 2. Printed Dipole Radiator: (a) Actual Geometry with Microstrip Balun and...Finite Elem ents . ............................................. 19 11. Equivalence Model for Waveguide /Cavity Problem: (a) Original Problem; (b... Waveguide Array Active Reflection Coefficient - Comparison of Results Uscig Cavity Array (CAVIARR) and General Array (PARANA) Models . 76 45. Rectangular

  12. Analysis of semi-active vehicle suspension system using airspring and MR damper

    NASA Astrophysics Data System (ADS)

    Tesfay, A. H.; Goel, V. K.

    2015-12-01

    With the new advancements in vibration control strategies and controllable actuator manufacturing, semi-active actuators and dampers are finding their way as an essential part of vibration isolators, particularly in vehicle suspension systems. This is attributed to the fact that in a semi-active system, the damping coefficients can be adjusted to improve ride comfort and road handling performances. The currently available semi-active damper technology uses MR fluid to control the damping characteristics of the suspension system. In addition to MR dampers, combining air springs in a semi-active suspension system leads to better handling and ride performance in vehicles. Furthermore, the use of air spring in semi-active suspension system helps to ease design of variable spring stiffness. This easy design opportunity leads to independent control of stiffness and ride height of the vehicle. This paper deals with the design and modelling of variable stiffness air spring for semi-active suspension system, modelling of semi-active suspension systems with variable stiffness and MR damper, and study their

  13. Performance analysis of a semiactive suspension system with particle swarm optimization and fuzzy logic control.

    PubMed

    Qazi, Abroon Jamal; de Silva, Clarence W; Khan, Afzal; Khan, Muhammad Tahir

    2014-01-01

    This paper uses a quarter model of an automobile having passive and semiactive suspension systems to develop a scheme for an optimal suspension controller. Semi-active suspension is preferred over passive and active suspensions with regard to optimum performance within the constraints of weight and operational cost. A fuzzy logic controller is incorporated into the semi-active suspension system. It is able to handle nonlinearities through the use of heuristic rules. Particle swarm optimization (PSO) is applied to determine the optimal gain parameters for the fuzzy logic controller, while maintaining within the normalized ranges of the controller inputs and output. The performance of resulting optimized system is compared with different systems that use various control algorithms, including a conventional passive system, choice options of feedback signals, and damping coefficient limits. Also, the optimized semi-active suspension system is evaluated for its performance in relation to variation in payload. Furthermore, the systems are compared with respect to the attributes of road handling and ride comfort. In all the simulation studies it is found that the optimized fuzzy logic controller surpasses the other types of control.

  14. Time response analysis in suspension system design of a high-speed car

    NASA Astrophysics Data System (ADS)

    Pagwiwoko, Cosmas Pandit

    2010-03-01

    A land speed record vehicle is designed to run on a flat surface like salt lake where the wheels are normally made from solid metal with a special suspension system. The suspension is designed to provide a stable platform to keep the wheel treads on tract, to insulate the car and the driver from the surface irregularities and to take part of good handling properties. The surface condition of the lake beds is basically flat without undulations but with inconsistent surface textures and ridges. Spring with nonlinear rate is used with the reason that the resistance builds up roughly proportional to the aerodynamic download for keeping the height more nearly constant. The objective of the work is to produce an efficient method for assisting the design of suspension system. At the initial step, the stiffness and the damping constants are determined based on RMS optimization by following the optimization strategy i.e. to minimize the absolute acceleration respect to the relative displacement of the suspension. Power bond graph technique is then used to model the nonlinearity of the components i.e. spring and dashpot of the suspension system. This technique also enables to incorporate the interactions of dynamic response of the vehicle's body with aerodynamic flow as a result of the base excitation of the ground to the wheels. The simulation is conducted on the platform of Simulink-MATLAB and the interactions amongst the components within the system are observed in time domain to evaluate the effectiveness of the suspension.

  15. Time response analysis in suspension system design of a high-speed car

    NASA Astrophysics Data System (ADS)

    Pagwiwoko, Cosmas Pandit

    2009-12-01

    A land speed record vehicle is designed to run on a flat surface like salt lake where the wheels are normally made from solid metal with a special suspension system. The suspension is designed to provide a stable platform to keep the wheel treads on tract, to insulate the car and the driver from the surface irregularities and to take part of good handling properties. The surface condition of the lake beds is basically flat without undulations but with inconsistent surface textures and ridges. Spring with nonlinear rate is used with the reason that the resistance builds up roughly proportional to the aerodynamic download for keeping the height more nearly constant. The objective of the work is to produce an efficient method for assisting the design of suspension system. At the initial step, the stiffness and the damping constants are determined based on RMS optimization by following the optimization strategy i.e. to minimize the absolute acceleration respect to the relative displacement of the suspension. Power bond graph technique is then used to model the nonlinearity of the components i.e. spring and dashpot of the suspension system. This technique also enables to incorporate the interactions of dynamic response of the vehicle's body with aerodynamic flow as a result of the base excitation of the ground to the wheels. The simulation is conducted on the platform of Simulink-MATLAB and the interactions amongst the components within the system are observed in time domain to evaluate the effectiveness of the suspension.

  16. Performance Analysis of a Semiactive Suspension System with Particle Swarm Optimization and Fuzzy Logic Control

    PubMed Central

    Qazi, Abroon Jamal; de Silva, Clarence W.

    2014-01-01

    This paper uses a quarter model of an automobile having passive and semiactive suspension systems to develop a scheme for an optimal suspension controller. Semi-active suspension is preferred over passive and active suspensions with regard to optimum performance within the constraints of weight and operational cost. A fuzzy logic controller is incorporated into the semi-active suspension system. It is able to handle nonlinearities through the use of heuristic rules. Particle swarm optimization (PSO) is applied to determine the optimal gain parameters for the fuzzy logic controller, while maintaining within the normalized ranges of the controller inputs and output. The performance of resulting optimized system is compared with different systems that use various control algorithms, including a conventional passive system, choice options of feedback signals, and damping coefficient limits. Also, the optimized semi-active suspension system is evaluated for its performance in relation to variation in payload. Furthermore, the systems are compared with respect to the attributes of road handling and ride comfort. In all the simulation studies it is found that the optimized fuzzy logic controller surpasses the other types of control. PMID:24574868

  17. Analysis of Wide-Band Signals Using Wavelet Array Processing

    NASA Astrophysics Data System (ADS)

    Nisii, V.; Saccorotti, G.

    2005-12-01

    Wavelets transforms allow for precise time-frequency localization in the analysis of non-stationary signals. In wavelet analysis the trade-off between frequency bandwidth and time duration, also known as Heisenberg inequality, is by-passed using a fully scalable modulated window which solves the signal-cutting problem of Windowed Fourier Transform. We propose a new seismic array data processing procedure capable of displaying the localized spatial coherence of the signal in both the time- and frequency-domain, in turn deriving the propagation parameters of the most coherent signals crossing the array. The procedure consists in: a) Wavelet coherence analysis for each station pair of the instruments array, aimed at retrieving the frequency- and time-localisation of coherent signals. To this purpose, we use the normalised wavelet cross- power spectrum, smoothed along the time and scale domains. We calculate different coherence spectra adopting smoothing windows of increasing lengths; a final, robust estimate of the time-frequency localisation of spatially-coherent signals is eventually retrieved from the stack of the individual coherence distribution. This step allows for a quick and reliable signal discrimination: wave groups propagating across the network will manifest as high-coherence patches spanning the corresponding time-scale region. b) Once the signals have been localised in the time and frequency domain,their propagation parameters are estimated using a modified MUSIC (MUltiple SIgnal Characterization) algorithm. We select the MUSIC approach as it demonstrated superior performances in the case of low SNR signals, more plane waves contemporaneously impinging at the array and closely separated sources. The narrow-band Coherent Signal Subspace technique is applied to the complex Continuous Wavelet Transform of multichannel data for improving the singularity of the estimated cross-covariance matrix and the accuracy of the estimated signal eigenvectors. Using

  18. SAVANT: Solar Array Verification and Analysis Tool Demonstrated

    NASA Technical Reports Server (NTRS)

    Chock, Ricaurte

    2000-01-01

    The photovoltaics (PV) industry is now being held to strict specifications, such as end-oflife power requirements, that force them to overengineer their products to avoid contractual penalties. Such overengineering has been the only reliable way to meet such specifications. Unfortunately, it also results in a more costly process than is probably necessary. In our conversations with the PV industry, the issue of cost has been raised again and again. Consequently, the Photovoltaics and Space Environment Effects branch at the NASA Glenn Research Center at Lewis Field has been developing a software tool to address this problem. SAVANT, Glenn's tool for solar array verification and analysis is in the technology demonstration phase. Ongoing work has proven that more efficient and less costly PV designs should be possible by using SAVANT to predict the on-orbit life-cycle performance. The ultimate goal of the SAVANT project is to provide a user-friendly computer tool to predict PV on-orbit life-cycle performance. This should greatly simplify the tasks of scaling and designing the PV power component of any given flight or mission. By being able to predict how a particular PV article will perform, designers will be able to balance mission power requirements (both beginning-of-life and end-of-life) with survivability concerns such as power degradation due to radiation and/or contamination. Recent comparisons with actual flight data from the Photovoltaic Array Space Power Plus Diagnostics (PASP Plus) mission validate this approach.

  19. Joint analysis of BICEP2/keck array and Planck Data.

    PubMed

    Ade, P A R; Aghanim, N; Ahmed, Z; Aikin, R W; Alexander, K D; Arnaud, M; Aumont, J; Baccigalupi, C; Banday, A J; Barkats, D; Barreiro, R B; Bartlett, J G; Bartolo, N; Battaner, E; Benabed, K; Benoît, A; Benoit-Lévy, A; Benton, S J; Bernard, J-P; Bersanelli, M; Bielewicz, P; Bischoff, C A; Bock, J J; Bonaldi, A; Bonavera, L; Bond, J R; Borrill, J; Bouchet, F R; Boulanger, F; Brevik, J A; Bucher, M; Buder, I; Bullock, E; Burigana, C; Butler, R C; Buza, V; Calabrese, E; Cardoso, J-F; Catalano, A; Challinor, A; Chary, R-R; Chiang, H C; Christensen, P R; Colombo, L P L; Combet, C; Connors, J; Couchot, F; Coulais, A; Crill, B P; Curto, A; Cuttaia, F; Danese, L; Davies, R D; Davis, R J; de Bernardis, P; de Rosa, A; de Zotti, G; Delabrouille, J; Delouis, J-M; Désert, F-X; Dickinson, C; Diego, J M; Dole, H; Donzelli, S; Doré, O; Douspis, M; Dowell, C D; Duband, L; Ducout, A; Dunkley, J; Dupac, X; Dvorkin, C; Efstathiou, G; Elsner, F; Enßlin, T A; Eriksen, H K; Falgarone, E; Filippini, J P; Finelli, F; Fliescher, S; Forni, O; Frailis, M; Fraisse, A A; Franceschi, E; Frejsel, A; Galeotta, S; Galli, S; Ganga, K; Ghosh, T; Giard, M; Gjerløw, E; Golwala, S R; González-Nuevo, J; Górski, K M; Gratton, S; Gregorio, A; Gruppuso, A; Gudmundsson, J E; Halpern, M; Hansen, F K; Hanson, D; Harrison, D L; Hasselfield, M; Helou, G; Henrot-Versillé, S; Herranz, D; Hildebrandt, S R; Hilton, G C; Hivon, E; Hobson, M; Holmes, W A; Hovest, W; Hristov, V V; Huffenberger, K M; Hui, H; Hurier, G; Irwin, K D; Jaffe, A H; Jaffe, T R; Jewell, J; Jones, W C; Juvela, M; Karakci, A; Karkare, K S; Kaufman, J P; Keating, B G; Kefeli, S; Keihänen, E; Kernasovskiy, S A; Keskitalo, R; Kisner, T S; Kneissl, R; Knoche, J; Knox, L; Kovac, J M; Krachmalnicoff, N; Kunz, M; Kuo, C L; Kurki-Suonio, H; Lagache, G; Lähteenmäki, A; Lamarre, J-M; Lasenby, A; Lattanzi, M; Lawrence, C R; Leitch, E M; Leonardi, R; Levrier, F; Lewis, A; Liguori, M; Lilje, P B; Linden-Vørnle, M; López-Caniego, M; Lubin, P M; Lueker, M; Macías-Pérez, J F; Maffei, B; Maino, D; Mandolesi, N; Mangilli, A; Maris, M; Martin, P G; Martínez-González, E; Masi, S; Mason, P; Matarrese, S; Megerian, K G; Meinhold, P R; Melchiorri, A; Mendes, L; Mennella, A; Migliaccio, M; Mitra, S; Miville-Deschênes, M-A; Moneti, A; Montier, L; Morgante, G; Mortlock, D; Moss, A; Munshi, D; Murphy, J A; Naselsky, P; Nati, F; Natoli, P; Netterfield, C B; Nguyen, H T; Nørgaard-Nielsen, H U; Noviello, F; Novikov, D; Novikov, I; O'Brient, R; Ogburn, R W; Orlando, A; Pagano, L; Pajot, F; Paladini, R; Paoletti, D; Partridge, B; Pasian, F; Patanchon, G; Pearson, T J; Perdereau, O; Perotto, L; Pettorino, V; Piacentini, F; Piat, M; Pietrobon, D; Plaszczynski, S; Pointecouteau, E; Polenta, G; Ponthieu, N; Pratt, G W; Prunet, S; Pryke, C; Puget, J-L; Rachen, J P; Reach, W T; Rebolo, R; Reinecke, M; Remazeilles, M; Renault, C; Renzi, A; Richter, S; Ristorcelli, I; Rocha, G; Rossetti, M; Roudier, G; Rowan-Robinson, M; Rubiño-Martín, J A; Rusholme, B; Sandri, M; Santos, D; Savelainen, M; Savini, G; Schwarz, R; Scott, D; Seiffert, M D; Sheehy, C D; Spencer, L D; Staniszewski, Z K; Stolyarov, V; Sudiwala, R; Sunyaev, R; Sutton, D; Suur-Uski, A-S; Sygnet, J-F; Tauber, J A; Teply, G P; Terenzi, L; Thompson, K L; Toffolatti, L; Tolan, J E; Tomasi, M; Tristram, M; Tucci, M; Turner, A D; Valenziano, L; Valiviita, J; Van Tent, B; Vibert, L; Vielva, P; Vieregg, A G; Villa, F; Wade, L A; Wandelt, B D; Watson, R; Weber, A C; Wehus, I K; White, M; White, S D M; Willmert, J; Wong, C L; Yoon, K W; Yvon, D; Zacchei, A; Zonca, A

    2015-03-13

    We report the results of a joint analysis of data from BICEP2/Keck Array and Planck. BICEP2 and Keck Array have observed the same approximately 400  deg^{2} patch of sky centered on RA 0 h, Dec. -57.5°. The combined maps reach a depth of 57 nK deg in Stokes Q and U in a band centered at 150 GHz. Planck has observed the full sky in polarization at seven frequencies from 30 to 353 GHz, but much less deeply in any given region (1.2  μK deg in Q and U at 143 GHz). We detect 150×353 cross-correlation in B modes at high significance. We fit the single- and cross-frequency power spectra at frequencies ≥150  GHz to a lensed-ΛCDM model that includes dust and a possible contribution from inflationary gravitational waves (as parametrized by the tensor-to-scalar ratio r), using a prior on the frequency spectral behavior of polarized dust emission from previous Planck analysis of other regions of the sky. We find strong evidence for dust and no statistically significant evidence for tensor modes. We probe various model variations and extensions, including adding a synchrotron component in combination with lower frequency data, and find that these make little difference to the r constraint. Finally, we present an alternative analysis which is similar to a map-based cleaning of the dust contribution, and show that this gives similar constraints. The final result is expressed as a likelihood curve for r, and yields an upper limit r_{0.05}<0.12 at 95% confidence. Marginalizing over dust and r, lensing B modes are detected at 7.0σ significance.

  20. Joint Analysis of BICEP2/Keck Array and Planck Data

    NASA Astrophysics Data System (ADS)

    BICEP2/Keck and Planck Collaborations; Ade, P. A. R.; Aghanim, N.; Ahmed, Z.; Aikin, R. W.; Alexander, K. D.; Arnaud, M.; Aumont, J.; Baccigalupi, C.; Banday, A. J.; Barkats, D.; Barreiro, R. B.; Bartlett, J. G.; Bartolo, N.; Battaner, E.; Benabed, K.; Benoît, A.; Benoit-Lévy, A.; Benton, S. J.; Bernard, J.-P.; Bersanelli, M.; Bielewicz, P.; Bischoff, C. A.; Bock, J. J.; Bonaldi, A.; Bonavera, L.; Bond, J. R.; Borrill, J.; Bouchet, F. R.; Boulanger, F.; Brevik, J. A.; Bucher, M.; Buder, I.; Bullock, E.; Burigana, C.; Butler, R. C.; Buza, V.; Calabrese, E.; Cardoso, J.-F.; Catalano, A.; Challinor, A.; Chary, R.-R.; Chiang, H. C.; Christensen, P. R.; Colombo, L. P. L.; Combet, C.; Connors, J.; Couchot, F.; Coulais, A.; Crill, B. P.; Curto, A.; Cuttaia, F.; Danese, L.; Davies, R. D.; Davis, R. J.; de Bernardis, P.; De Rosa, A.; de Zotti, G.; Delabrouille, J.; Delouis, J.-M.; Désert, F.-X.; Dickinson, C.; Diego, J. M.; Dole, H.; Donzelli, S.; Doré, O.; Douspis, M.; Dowell, C. D.; Duband, L.; Ducout, A.; Dunkley, J.; Dupac, X.; Dvorkin, C.; Efstathiou, G.; Elsner, F.; Enßlin, T. A.; Eriksen, H. K.; Falgarone, E.; Filippini, J. P.; Finelli, F.; Fliescher, S.; Forni, O.; Frailis, M.; Fraisse, A. A.; Franceschi, E.; Frejsel, A.; Galeotta, S.; Galli, S.; Ganga, K.; Ghosh, T.; Giard, M.; Gjerløw, E.; Golwala, S. R.; González-Nuevo, J.; Górski, K. M.; Gratton, S.; Gregorio, A.; Gruppuso, A.; Gudmundsson, J. E.; Halpern, M.; Hansen, F. K.; Hanson, D.; Harrison, D. L.; Hasselfield, M.; Helou, G.; Henrot-Versillé, S.; Herranz, D.; Hildebrandt, S. R.; Hilton, G. C.; Hivon, E.; Hobson, M.; Holmes, W. A.; Hovest, W.; Hristov, V. V.; Huffenberger, K. M.; Hui, H.; Hurier, G.; Irwin, K. D.; Jaffe, A. H.; Jaffe, T. R.; Jewell, J.; Jones, W. C.; Juvela, M.; Karakci, A.; Karkare, K. S.; Kaufman, J. P.; Keating, B. G.; Kefeli, S.; Keihänen, E.; Kernasovskiy, S. A.; Keskitalo, R.; Kisner, T. S.; Kneissl, R.; Knoche, J.; Knox, L.; Kovac, J. M.; Krachmalnicoff, N.; Kunz, M.; Kuo, C. L.; Kurki-Suonio, H.; Lagache, G.; Lähteenmäki, A.; Lamarre, J.-M.; Lasenby, A.; Lattanzi, M.; Lawrence, C. R.; Leitch, E. M.; Leonardi, R.; Levrier, F.; Lewis, A.; Liguori, M.; Lilje, P. B.; Linden-Vørnle, M.; López-Caniego, M.; Lubin, P. M.; Lueker, M.; Macías-Pérez, J. F.; Maffei, B.; Maino, D.; Mandolesi, N.; Mangilli, A.; Maris, M.; Martin, P. G.; Martínez-González, E.; Masi, S.; Mason, P.; Matarrese, S.; Megerian, K. G.; Meinhold, P. R.; Melchiorri, A.; Mendes, L.; Mennella, A.; Migliaccio, M.; Mitra, S.; Miville-Deschênes, M.-A.; Moneti, A.; Montier, L.; Morgante, G.; Mortlock, D.; Moss, A.; Munshi, D.; Murphy, J. A.; Naselsky, P.; Nati, F.; Natoli, P.; Netterfield, C. B.; Nguyen, H. T.; Nørgaard-Nielsen, H. U.; Noviello, F.; Novikov, D.; Novikov, I.; O'Brient, R.; Ogburn, R. W.; Orlando, A.; Pagano, L.; Pajot, F.; Paladini, R.; Paoletti, D.; Partridge, B.; Pasian, F.; Patanchon, G.; Pearson, T. J.; Perdereau, O.; Perotto, L.; Pettorino, V.; Piacentini, F.; Piat, M.; Pietrobon, D.; Plaszczynski, S.; Pointecouteau, E.; Polenta, G.; Ponthieu, N.; Pratt, G. W.; Prunet, S.; Pryke, C.; Puget, J.-L.; Rachen, J. P.; Reach, W. T.; Rebolo, R.; Reinecke, M.; Remazeilles, M.; Renault, C.; Renzi, A.; Richter, S.; Ristorcelli, I.; Rocha, G.; Rossetti, M.; Roudier, G.; Rowan-Robinson, M.; Rubiño-Martín, J. A.; Rusholme, B.; Sandri, M.; Santos, D.; Savelainen, M.; Savini, G.; Schwarz, R.; Scott, D.; Seiffert, M. D.; Sheehy, C. D.; Spencer, L. D.; Staniszewski, Z. K.; Stolyarov, V.; Sudiwala, R.; Sunyaev, R.; Sutton, D.; Suur-Uski, A.-S.; Sygnet, J.-F.; Tauber, J. A.; Teply, G. P.; Terenzi, L.; Thompson, K. L.; Toffolatti, L.; Tolan, J. E.; Tomasi, M.; Tristram, M.; Tucci, M.; Turner, A. D.; Valenziano, L.; Valiviita, J.; van Tent, B.; Vibert, L.; Vielva, P.; Vieregg, A. G.; Villa, F.; Wade, L. A.; Wandelt, B. D.; Watson, R.; Weber, A. C.; Wehus, I. K.; White, M.; White, S. D. M.; Willmert, J.; Wong, C. L.; Yoon, K. W.; Yvon, D.; Zacchei, A.; Zonca, A.; Bicep2/Keck; Planck Collaborations

    2015-03-01

    We report the results of a joint analysis of data from BICEP2/Keck Array and Planck. BICEP2 and Keck Array have observed the same approximately 400 deg2 patch of sky centered on RA 0 h, Dec. -57.5 ° . The combined maps reach a depth of 57 nK deg in Stokes Q and U in a band centered at 150 GHz. Planck has observed the full sky in polarization at seven frequencies from 30 to 353 GHz, but much less deeply in any given region (1.2 μ K deg in Q and U at 143 GHz). We detect 150 ×353 cross-correlation in B modes at high significance. We fit the single- and cross-frequency power spectra at frequencies ≥150 GHz to a lensed-Λ CDM model that includes dust and a possible contribution from inflationary gravitational waves (as parametrized by the tensor-to-scalar ratio r), using a prior on the frequency spectral behavior of polarized dust emission from previous Planck analysis of other regions of the sky. We find strong evidence for dust and no statistically significant evidence for tensor modes. We probe various model variations and extensions, including adding a synchrotron component in combination with lower frequency data, and find that these make little difference to the r constraint. Finally, we present an alternative analysis which is similar to a map-based cleaning of the dust contribution, and show that this gives similar constraints. The final result is expressed as a likelihood curve for r, and yields an upper limit r0.05<0.12 at 95% confidence. Marginalizing over dust and r, lensing B modes are detected at 7.0 σ significance.

  1. Rate equations analysis of phase-locked semiconductor laser arrays under steady state conditions

    NASA Technical Reports Server (NTRS)

    Katz, J.; Kapon, E.; Margalit, S.; Yariv, A.

    1984-01-01

    Rate equations analysis of phase-locked semiconductor laser arrays has been carried out. It was found that for given (laser) current densities, the photon density distribution in the array elements is that particular one which maximizes the total photon density. The results of this analysis were then combined with the waveguide properties of the laser array waveguide, yielding a basic model of phase-locked diode laser arrays. This model explains the effects of the variation of the current combination through the array elements on its mode structure that were observed recently.

  2. A control performance analysis for MacPherson active suspension system under bounce sine sweep road profile

    NASA Astrophysics Data System (ADS)

    Ismail, M. Fahezal; Sam, Yahaya Md.; Sudin, Shahdan; Aripin, M. Khairi

    2016-10-01

    This paper studies a control performance analysis for MacPherson active suspension system. The ride comfort quality is a very important specification for modern automotive suspension system. The Proportional Integral Sliding Mode Control-Evolutionary Strategy-Composite Nonlinear Feedback (PISMC-ES-CNF) controller is designed to solve the transient problem occurred in vertical acceleration of sprung mass. The control performance is tested by using PISMC-ES-CNF and compared with Sliding Mode Controller (SMC) and Composite Nonlinear Feedback (CNF) under Bounce Sine Sweep road profile. The ISO 2631-1, 1997 is a standard for vertical acceleration of sprung mass level and degree of comfort. The one way Analysis of Variance (ANOVA) and standard deviation have showed that the PISMC- ES-CNF controller compared with others controllers achieved the best control performance.

  3. Copy Number Variation Analysis by Array Analysis of Single Cells Following Whole Genome Amplification.

    PubMed

    Dimitriadou, Eftychia; Zamani Esteki, Masoud; Vermeesch, Joris Robert

    2015-01-01

    Whole genome amplification is required to ensure the availability of sufficient material for copy number variation analysis of a genome deriving from an individual cell. Here, we describe the protocols we use for copy number variation analysis of non-fixed single cells by array-based approaches following single-cell isolation and whole genome amplification. We are focusing on two alternative protocols, an isothermal and a PCR-based whole genome amplification method, followed by either comparative genome hybridization (aCGH) or SNP array analysis, respectively.

  4. ArrayExplorer, a program in Visual Basic for robust and accurate filter cDNA array analysis.

    PubMed

    Patriotis, P C; Querec, T D; Gruver, B N; Brown, T R; Patriotis, C

    2001-10-01

    Determining the dynamics in the global regulation of gene expression holds the promise of bringing a better understanding of the processes that govern physiological cell growth regulation and its disruption during the development of disease. The advent for cDNA arrays has created the possibility for the parallel analysis of expression of thousands of genes in a given cell population, simultaneously. The level of expression of a given set of genes within the studied tissue corresponds to the intensity of a labeled cDNA probe synthesized from the studied tissue RNA and bound specifically to the cDNAs of the genes spotted on the array. The accurate extraction of gene expression intensity values is essential for further data analysis and the interpretation of the obtained results. Here, we describe a new array image-processing software developed in Microsoft Visual Basic, the ArrayExplorer, which provides a user-friendly, multiple-window interface and a number of automatic and manual features that facilitate a reliable, robust, and accurate extraction of gene intensity values from filter-array images.

  5. RAD (RNA abundance database): an infrastructure for array data analysis

    NASA Astrophysics Data System (ADS)

    Manduchi, Elisabetta; Pizarro, Angel; Stoeckert, Christian, Jr.

    2001-06-01

    Analysis of array-based gene expression experiments is challenging particularly when multiple experiments are involved and presents challenges in data management as well. Selecting well-measured spots and normalizing raw data are basic steps required for subsequent analyses, especially those involved with comparisons over a collection of experiments. Other preprocessing steps might also be needed for certain analyses. The most appropriate criteria for spot selection, for normalization, and for other data transformations depend on the experiments under study and on the questions investigated. Furthermore, comparing experiments appropriately requires knowledge of how the experiments were performed and the samples that were used in sufficient detail to understand their degree of similarity. Approaches taken in RAD to address these issues will be presented. These include the storage of raw and processed data along with history and parameter tracking and the use of ontologies to provide precise consistent experimental descriptions.

  6. The Murchison Widefield Array 21 cm Power Spectrum Analysis Methodology

    NASA Astrophysics Data System (ADS)

    Jacobs, Daniel C.; Hazelton, B. J.; Trott, C. M.; Dillon, Joshua S.; Pindor, B.; Sullivan, I. S.; Pober, J. C.; Barry, N.; Beardsley, A. P.; Bernardi, G.; Bowman, Judd D.; Briggs, F.; Cappallo, R. J.; Carroll, P.; Corey, B. E.; de Oliveira-Costa, A.; Emrich, D.; Ewall-Wice, A.; Feng, L.; Gaensler, B. M.; Goeke, R.; Greenhill, L. J.; Hewitt, J. N.; Hurley-Walker, N.; Johnston-Hollitt, M.; Kaplan, D. L.; Kasper, J. C.; Kim, HS; Kratzenberg, E.; Lenc, E.; Line, J.; Loeb, A.; Lonsdale, C. J.; Lynch, M. J.; McKinley, B.; McWhirter, S. R.; Mitchell, D. A.; Morales, M. F.; Morgan, E.; Neben, A. R.; Thyagarajan, N.; Oberoi, D.; Offringa, A. R.; Ord, S. M.; Paul, S.; Prabu, T.; Procopio, P.; Riding, J.; Rogers, A. E. E.; Roshi, A.; Udaya Shankar, N.; Sethi, Shiv K.; Srivani, K. S.; Subrahmanyan, R.; Tegmark, M.; Tingay, S. J.; Waterson, M.; Wayth, R. B.; Webster, R. L.; Whitney, A. R.; Williams, A.; Williams, C. L.; Wu, C.; Wyithe, J. S. B.

    2016-07-01

    We present the 21 cm power spectrum analysis approach of the Murchison Widefield Array Epoch of Reionization project. In this paper, we compare the outputs of multiple pipelines for the purpose of validating statistical limits cosmological hydrogen at redshifts between 6 and 12. Multiple independent data calibration and reduction pipelines are used to make power spectrum limits on a fiducial night of data. Comparing the outputs of imaging and power spectrum stages highlights differences in calibration, foreground subtraction, and power spectrum calculation. The power spectra found using these different methods span a space defined by the various tradeoffs between speed, accuracy, and systematic control. Lessons learned from comparing the pipelines range from the algorithmic to the prosaically mundane; all demonstrate the many pitfalls of neglecting reproducibility. We briefly discuss the way these different methods attempt to handle the question of evaluating a significant detection in the presence of foregrounds.

  7. Assessment of formulation robustness for nano-crystalline suspensions using failure mode analysis or derisking approach.

    PubMed

    Nakach, Mostafa; Authelin, Jean-René; Voignier, Cecile; Tadros, Tharwat; Galet, Laurence; Chamayou, Alain

    2016-06-15

    The small particle size of nano-crystalline suspensions can be responsible for their physical instability during drug product preparation (downstream processing), storage and administration. For that purpose, the commercial formulation needs to be sufficiently robust to various triggering conditions, such as ionic strength, shear rate, wetting/dispersing agent desorption by dilution, temperature and pH variation. In our previous work we described a systematic approach to select the suitable wetting/dispersant agent for the stabilization of nano-crystalline suspension. In this paper, we described the assessment of the formulation robustness (stabilized using a mixture of sodium dodecyl sulfate (SDS) and polyvinylpyrrolidone (PVP) and) by measuring the rate of perikinetic (diffusion-controlled) and orthokinetic (shear-induced) aggregation as a function of ionic strength, temperature, pH and dilution. The results showed that, using the SDS/PVP system, the critical coagulation concentration is about five times higher than that observed in the literature for suspension colloidaly stable at high concentration. The nano-suspension was also found to be very stable at ambient temperature and at different pH conditions. Desorption test confirmed the high affinity between API and wetting/dispersing agent. However, the suspension undergoes aggregation at high temperature due to the desorption of the wetting/dispersing agent and disaggregation of SDS micelles. Furthermore, aggregation occurs at very high shear rate (orhokinetic aggregation) by overcoming the energy barrier responsible for colloidal stability of the system.

  8. Analysis of the causes of recurrence after frontalis suspension using silicone rods for congenital ptosis

    PubMed Central

    Kim, Chang Yeom; Son, Byeong Jae; Son, Jangyup; Hong, Jongill; Lee, Sang Yeul

    2017-01-01

    Background Silicone rod is a commonly used synthetic suspension material in frontalis suspension surgery to correct blepharoptosis. The most challenging problem and a decisive drawback of the use of silicone rod is a considerable rate of ptosis recurrence after surgery. We examined patients with recurred ptosis and assessed the physical and micromorphological properties of implanted silicone rods to determine the causative mechanisms of recurred ptosis after frontalis suspension using silicone rod. Methods This is a prospective observational case series of 22 pediatric patients with recurred ptosis after frontalis suspension using silicone rods for congenital ptosis. Implanted silicone rods were observed and removed during the operation for correction of recurred ptosis. The removed silicone rods were physically and micromorphologically evaluated to determine the cause of recurrence. Results Pretarsal fixation positions migrated upward, whereas suprabrow fixation positions migrated downward during ptosis recurrence. The breaking strength of implanted silicone rods was reduced by approximately 50% during 3 years. Cracks, debris, and loss of homogenous structure with disintegration were observed on scanning electron micrographs of implanted silicone rods in patients with recurred ptosis. Preoperative severe degree of ptosis also contributed to recurred ptosis. Conclusions Recurrence of ptosis after frontalis suspension using silicone rod was associated with physical changes of implanted silicone rods, including positional migration, weakened tensile strength, and micromorphological changes in combination with patients’ characteristics. PMID:28207846

  9. MATRIX DISCRIMINANT ANALYSIS WITH APPLICATION TO COLORIMETRIC SENSOR ARRAY DATA.

    PubMed

    Zhong, Wenxuan; Suslick, Kenneth S

    2015-09-01

    With the rapid development of nano-technology, a "colorimetric sensor array" (CSA) which is referred to as an optical electronic nose has been developed for the identification of toxicants. Unlike traditional sensors which rely on a single chemical interaction, CSA can measure multiple chemical interactions by using chemo-responsive dyes. The color changes of the chemo-responsive dyes are recorded before and after exposure to toxicants and serve as a template for classification. The color changes are digitalized in the form of a matrix with rows representing dye effects and columns representing the spectrum of colors. Thus, matrix-classification methods are highly desirable. In this article, we develop a novel classification method, matrix discriminant analysis (MDA), which is a generalization of linear discriminant analysis (LDA) for the data in matrix form. By incorporating the intrinsic matrix-structure of the data in discriminant analysis, the proposed method can improve CSA's sensitivity and more importantly, specificity. A penalized MDA method, PMDA, is also introduced to further incorporate sparsity structure in discriminant function. Numerical studies suggest that the proposed MDA and PMDA methods outperform LDA and other competing discriminant methods for matrix predictors. The asymptotic consistency of MDA is also established. R code and data are available online as supplementary material.

  10. COMPOSITE CERAMIC ARMOR DEFECT ANALYSIS USING PHASED ARRAY ULTRASOUND

    DTIC Science & Technology

    2011-01-30

    background variation. Such an approximation applied to the FFT results of Conclusion Phased - array ultrasonic inspection methods have been...SNR values above 2.55) were statistically defective either. CONCLUSION Phased - array ultrasonic inspection methods have been successfully applied to...4 G.P. Singh and J. W. Davies, “Multiple Transducer Ultrasonic Techniques: Phased Arrays ” In Nondestructive Testing Handbook, 2nd Ed., 7, pp. 284

  11. Evolutionary insights from suffix array-based genome sequence analysis.

    PubMed

    Poddar, Anindya; Chandra, Nagasuma; Ganapathiraju, Madhavi; Sekar, K; Klein-Seetharaman, Judith; Reddy, Raj; Balakrishnan, N

    2007-08-01

    Gene and protein sequence analyses, central components of studies in modern biology are easily amenable to string matching and pattern recognition algorithms. The growing need of analysing whole genome sequences more efficiently and thoroughly, has led to the emergence of new computational methods. Suffix trees and suffix arrays are data structures, well known in many other areas and are highly suited for sequence analysis too. Here we report an improvement to the design of construction of suffix arrays. Enhancement in versatility and scalability, enabled by this approach, is demonstrated through the use of real-life examples. The scalability of the algorithm to whole genomes renders it suitable to address many biologically interesting problems. One example is the evolutionary insight gained by analysing unigrams, bi-grams and higher n-grams, indicating that the genetic code has a direct influence on the overall composition of the genome. Further, different proteomes have been analysed for the coverage of the possible peptide space, which indicate that as much as a quarter of the total space at the tetra-peptide level is left un-sampled in prokaryotic organisms, although almost all tri-peptides can be seen in one protein or another in a proteome. Besides, distinct patterns begin to emerge for the counts of particular tetra and higher peptides, indicative of a 'meaning' for tetra and higher n-grams. The toolkit has also been used to demonstrate the usefulness of identifying repeats in whole proteomes efficiently. As an example, 16 members of one COG,coded by the genome of Mycobacterium tuberculosis H37Rv have been found to contain a repeating sequence of 300 amino acids.

  12. Seismic Background Noise Analysis of Brtr (PS-43) Array

    NASA Astrophysics Data System (ADS)

    Bakir, M. E.; Meral Ozel, N.; Semin, K. U.

    2014-12-01

    The seismic background noise variation of BRTR array, composed of two sub arrays located in Ankara and in Kırıkkale-Keskin, has been investigated by calculating Power Spectral Density and Probability Density Functions for seasonal and diurnal noise variations between 2005 and 2011. PSDs were computed within the frequency range of 100 s - 10 Hz. The results show us a little change in noise conditions in terms of time and location. Especially, noise level changes were observed at 3-5 Hz in diurnal variations at Keskin array and there is a 5-7 dB difference in day and night time in cultural noise band (1-10 Hz). On the other hand, noise levels of medium period array are high in 1-2 Hz frequency range. High noise levels were observed in daily working times when we compared to night-time in cultural noise band. The seasonal background noise variation at both sites also shows very similar properties to each other. Since both arrays consist ofborehole instruments and away from the coasts, we saw a small change in noise levels caused by microseism. Comparison between Keskin short period array and Ankara medium period array show us Keskin array is quiter than Ankara array.

  13. Seismic Background Noise Analysis of BRTR (PS-43) Array

    NASA Astrophysics Data System (ADS)

    Ezgi Bakir, Mahmure; Meral Ozel, Nurcan; Umut Semin, Korhan

    2015-04-01

    The seismic background noise variation of BRTR array, composed of two sub arrays located in Ankara and in Ankara-Keskin, has been investigated by calculating Power Spectral Density and Probability Density Functions for seasonal and diurnal noise variations between 2005 and 2011. PSDs were computed within the frequency range of 100 s - 10 Hz. The results show us a little change in noise conditions in terms of time and location. Especially, noise level changes were observed at 3-5 Hz in diurnal variations at Keskin array and there is a 5-7 dB difference in day and night time in cultural noise band (1-10 Hz). On the other hand, noise levels of medium period array is high in 1-2 Hz frequency rather than short period array. High noise levels were observed in daily working times when we compare it to night-time in cultural noise band. The seasonal background noise variation at both sites also shows very similar properties to each other. Since these stations are borehole instruments and away from the coasts, we saw a small change in noise levels caused by microseism. Comparison between Keskin short period array and Ankara medium period array show us Keskin array is quiter than Ankara array.

  14. GEO Satellite Solar Array Abnormality's Analysis and Treatment

    NASA Astrophysics Data System (ADS)

    Wang, Junyan; Yang, Yujie; Zhu, Weibo; Liu, Jingyong; Xu, Hui

    Solar array, converting sunlight into electricity, is one of the most important components in satellite energy subsystem. It is significant for in-orbit satellite safety that solar array and its subsidiaries work normally. An abnormal phenomenon that the output current of one solar array suddenly decreased happened in a GEO satellite. Combined with the structure of the solar array system and the trends of relevant parameters during the abnormality, the paper analyzed the possible reasons, and detected the root cause, and finally provided an emergency treatment for this kind of abnormality.

  15. Simulation analysis of the EUSAMA Plus suspension testing method including the impact of the vehicle untested side

    NASA Astrophysics Data System (ADS)

    Dobaj, K.

    2016-09-01

    The work deals with the simulation analysis of the half car vehicle model parameters on the suspension testing results. The Matlab simulation software was used. The considered model parameters are involved with the shock absorber damping coefficient, the tire radial stiffness, the car width and the rocker arm length. The consistent vibrations of both test plates were considered. Both wheels of the car were subjected to identical vibration, with frequency changed similar to the EUSAMA Plus principle. The shock absorber damping coefficient (for several values of the car width and rocker arm length) was changed on one and both sides of the vehicle. The obtained results are essential for the new suspension testing algorithm (basing on the EUSAMA Plus principle), which will be the aim of the further author's work.

  16. Metabolic labeling and membrane fractionation for comparative proteomic analysis of Arabidopsis thaliana suspension cell cultures.

    PubMed

    Szymanski, Witold G; Kierszniowska, Sylwia; Schulze, Waltraud X

    2013-09-28

    Plasma membrane microdomains are features based on the physical properties of the lipid and sterol environment and have particular roles in signaling processes. Extracting sterol-enriched membrane microdomains from plant cells for proteomic analysis is a difficult task mainly due to multiple preparation steps and sources for contaminations from other cellular compartments. The plasma membrane constitutes only about 5-20% of all the membranes in a plant cell, and therefore isolation of highly purified plasma membrane fraction is challenging. A frequently used method involves aqueous two-phase partitioning in polyethylene glycol and dextran, which yields plasma membrane vesicles with a purity of 95% (1). Sterol-rich membrane microdomains within the plasma membrane are insoluble upon treatment with cold nonionic detergents at alkaline pH. This detergent-resistant membrane fraction can be separated from the bulk plasma membrane by ultracentrifugation in a sucrose gradient (2). Subsequently, proteins can be extracted from the low density band of the sucrose gradient by methanol/chloroform precipitation. Extracted protein will then be trypsin digested, desalted and finally analyzed by LC-MS/MS. Our extraction protocol for sterol-rich microdomains is optimized for the preparation of clean detergent-resistant membrane fractions from Arabidopsis thaliana cell cultures. We use full metabolic labeling of Arabidopsis thaliana suspension cell cultures with K(15)NO3 as the only nitrogen source for quantitative comparative proteomic studies following biological treatment of interest (3). By mixing equal ratios of labeled and unlabeled cell cultures for joint protein extraction the influence of preparation steps on final quantitative result is kept at a minimum. Also loss of material during extraction will affect both control and treatment samples in the same way, and therefore the ratio of light and heave peptide will remain constant. In the proposed method either labeled or

  17. Measurement and analysis of the electromagnetic scattering of a geodesic array of triangular trihedral corner reflectors

    NASA Astrophysics Data System (ADS)

    Hamilton, Richard E.

    1990-03-01

    This thesis investigated the EM scattering of a geodesic array consisting of a cluster of 20 trihedral corner reflectors held together by hinges. This target was designed to provide a large radar return with a spatial coverage greater than that due to an array of 8 corner reflectors. RCS, or echo area, was chosen as a means of investigating the EM scattering of a scaled model version of geodesic array. The RCS of the individual components of the geodesic array (i.e., the single corner reflectors) and the RCS of the geodesic array were measured using a continuous wave measurement technique. For the purpose of comparison, the RCS of an 8 corner reflector array was also measured. In order to gather as much spatial scattering information as possible, a unique target support mount was designed, constructed, and used to collect conical cut RCS patterns. Measured RCS patterns of the targets are included in the appendixes. A comparative analysis between the measured RCS of the geodesic array and that of the 8 corner reflector array was performed to determine how well the geodesic array met its designed goal. It was found that in almost all cases, the measured spatial RCS coverage for the geodesic array was equal to or better than the measured spatial RCS coverage of the array of 8 corner reflectors. The only exception was for broadside incidence for which the geodesic array spatial coverage was slightly less.

  18. Peptide Arrays for Kinome Analysis of Livestock Species

    PubMed Central

    Daigle, Joanna; Van Wyk, Brenden; Trost, Brett; Scruten, Erin; Arsenault, Ryan; Kusalik, Anthony; Griebel, Philip John; Napper, Scott

    2014-01-01

    Reversible protein phosphorylation is a central mechanism for both the transfer of intracellular information and the initiation of cellular responses. Within human medicine, considerable emphasis is placed on understanding and controlling the enzymes (kinases) that are responsible for catalyzing these modifications. This is evident in the prominent use of kinase inhibitors as drugs as well as the trend to understand complex biology and identify biomarkers via characterizations of global kinase (kinome) activity. Despite the demonstrated value of focusing on kinome activity, the application of this perspective to livestock has been restricted by the absence of appropriate research tools. In this review, we discuss the development of software platforms that facilitate the development and application of species-specific peptide arrays for kinome analysis of livestock. Examples of the application of kinomic approaches to a number of priority species (cattle, pigs, and chickens) in a number of biological contexts (infections, biomarker discovery, and food quality) are presented as are emerging trends for kinome analysis of livestock. PMID:26664912

  19. Single cell trapping and DNA damage analysis using microwell arrays

    PubMed Central

    Wood, David K.; Weingeist, David M.; Bhatia, Sangeeta N.; Engelward, Bevin P.

    2010-01-01

    With a direct link to cancer, aging, and heritable diseases as well as a critical role in cancer treatment, the importance of DNA damage is well-established. The intense interest in DNA damage in applications ranging from epidemiology to drug development drives an urgent need for robust, high throughput, and inexpensive tools for objective, quantitative DNA damage analysis. We have developed a simple method for high throughput DNA damage measurements that provides information on multiple lesions and pathways. Our method utilizes single cells captured by gravity into a microwell array with DNA damage revealed morphologically by gel electrophoresis. Spatial encoding enables simultaneous assays of multiple experimental conditions performed in parallel with fully automated analysis. This method also enables novel functionalities, including multiplexed labeling for parallel single cell assays, as well as DNA damage measurement in cell aggregates. We have also developed 24- and 96-well versions, which are applicable to high throughput screening. Using this platform, we have quantified DNA repair capacities of individuals with different genetic backgrounds, and compared the efficacy of potential cancer chemotherapeutics as inhibitors of a critical DNA repair enzyme, human AP endonuclease. This platform enables high throughput assessment of multiple DNA repair pathways and subpathways in parallel, thus enabling new strategies for drug discovery, genotoxicity testing, and environmental health. PMID:20534572

  20. Analysis of Eigenspace Dynamics with Applications to Array Processing

    DTIC Science & Technology

    2014-09-30

    drifting arrays strongly affected by deformation or array-depth perturbations. The long-term goal of this effort is the development of physically...J., “Measurements of three-dimensional propagation in a continental shelf environment”, J. Acoust. Soc. Am. 125, pp. 1394-1402, 2009

  1. Terrestrial central station array life-cycle analysis support study

    NASA Technical Reports Server (NTRS)

    1978-01-01

    Plant elements evaluated included designs for module, panel and array structures, as well as balance-of-plant systems. Installation and maintenance procedures and the impact of site environment were also evaluated. In terms of the cost of energy produced, the horizontal array configuration was found to be less expensive than the tandem array at latitudes less than 40 deg. Both of these configurations are less expensive than the rack design. However, the costs of energy for all three configurations are within approximately ?10 percent of each other. For flat plate panels, the seasonally adjusted and tracking array configurations are not economically attractive when compared to the three other designs. Balance-of-plant costs are approximately equal to (goal) module costs. The array structures and foundations are the most expensive items in the balance-of-plant costs.

  2. Analysis of finite phased arrays of circular microstrip patches

    NASA Technical Reports Server (NTRS)

    Deshpande, Manohar D.; Bailey, Marion C.

    1989-01-01

    A method is presented for analyzing a finite planar array of circular microstrip patches fed by coaxial probes. The self- and mutual impedances between array elements are calculated using the method of moments with the dyadic Green's function for a dielectric layer on a ground plane. The patch circuits are determined by using the reaction integral equation. The active input impedance as well as the active element pattern of the array are computed from a knowledge of the resultant patch currents. The calculated results for two-element and eight-element linear arrays are in good agreement with experimental data. The active reflection coefficient and element pattern for the center and edge elements of a two-dimensional array as a function of scan angle are also presented.

  3. Geometric nonlinear analysis of self-anchored cable-stayed suspension bridges.

    PubMed

    Hui-Li, Wang; Yan-Bin, Tan; Si-Feng, Qin; Zhe, Zhang

    2013-01-01

    Geometric nonlinearity of self-anchored cable-stayed suspension bridges is studied in this paper. The repercussion of shrinkage and creep of concrete, rise-to-span ratio, and girder camber on the system is discussed. A self-anchored cable-stayed suspension bridge with a main span of 800 m is analyzed with linear theory, second-order theory, and nonlinear theory, respectively. In the condition of various rise-to-span ratios and girder cambers, the moments and displacements of both the girder and the pylon under live load are acquired. Based on the results it is derived that the second-order theory can be adopted to analyze a self-anchored cable-stayed suspension bridge with a main span of 800 m, and the error is less than 6%. The shrinkage and creep of concrete impose a conspicuous impact on the structure. And it outmatches suspension bridges for system stiffness. As the rise-to-span ratio increases, the axial forces of the main cable and the girder decline. The system stiffness rises with the girder camber being employed.

  4. Geometric Nonlinear Analysis of Self-Anchored Cable-Stayed Suspension Bridges

    PubMed Central

    Hui-Li, Wang; Yan-Bin, Tan; Si-Feng, Qin; Zhe, Zhang

    2013-01-01

    Geometric nonlinearity of self-anchored cable-stayed suspension bridges is studied in this paper. The repercussion of shrinkage and creep of concrete, rise-to-span ratio, and girder camber on the system is discussed. A self-anchored cable-stayed suspension bridge with a main span of 800 m is analyzed with linear theory, second-order theory, and nonlinear theory, respectively. In the condition of various rise-to-span ratios and girder cambers, the moments and displacements of both the girder and the pylon under live load are acquired. Based on the results it is derived that the second-order theory can be adopted to analyze a self-anchored cable-stayed suspension bridge with a main span of 800 m, and the error is less than 6%. The shrinkage and creep of concrete impose a conspicuous impact on the structure. And it outmatches suspension bridges for system stiffness. As the rise-to-span ratio increases, the axial forces of the main cable and the girder decline. The system stiffness rises with the girder camber being employed. PMID:24282388

  5. Analysis of a suspension system for a wheel rolling on a flat track

    NASA Technical Reports Server (NTRS)

    Mcginness, H.

    1978-01-01

    A flexure strut wheel suspension system is described which keeps a wheel flat against the track and maintains a small interface moment. Equations are presented for the evaluation of this moment. A comparison of the flexure strut system is made with a rigid link design containing pivot bearings.

  6. Analysis of solvent evaporation effects in spin coating of colloidal oxide suspensions

    SciTech Connect

    Rehg, T.J.; Higgins, B.G.

    1991-07-23

    The goal of our research this past year was to develop a theory for spin coating that accounts for solvent evaporation, film hydrodynamics, and the rheology of the colloidal suspension being coated. This report briefly discusses work toward this goal during the 1989 to 1990 funding year. (JL)

  7. arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

    PubMed Central

    Menten, Björn; Pattyn, Filip; De Preter, Katleen; Robbrecht, Piet; Michels, Evi; Buysse, Karen; Mortier, Geert; De Paepe, Anne; van Vooren, Steven; Vermeesch, Joris; Moreau, Yves; De Moor, Bart; Vermeulen, Stefan; Speleman, Frank; Vandesompele, Jo

    2005-01-01

    Background The availability of the human genome sequence as well as the large number of physically accessible oligonucleotides, cDNA, and BAC clones across the entire genome has triggered and accelerated the use of several platforms for analysis of DNA copy number changes, amongst others microarray comparative genomic hybridization (arrayCGH). One of the challenges inherent to this new technology is the management and analysis of large numbers of data points generated in each individual experiment. Results We have developed arrayCGHbase, a comprehensive analysis platform for arrayCGH experiments consisting of a MIAME (Minimal Information About a Microarray Experiment) supportive database using MySQL underlying a data mining web tool, to store, analyze, interpret, compare, and visualize arrayCGH results in a uniform and user-friendly format. Following its flexible design, arrayCGHbase is compatible with all existing and forthcoming arrayCGH platforms. Data can be exported in a multitude of formats, including BED files to map copy number information on the genome using the Ensembl or UCSC genome browser. Conclusion ArrayCGHbase is a web based and platform independent arrayCGH data analysis tool, that allows users to access the analysis suite through the internet or a local intranet after installation on a private server. ArrayCGHbase is available at . PMID:15910681

  8. An analysis of the oscillatory movements of the suspension ropes for an elevator with parabolic speed modeling and continuous deceleration

    NASA Astrophysics Data System (ADS)

    Craciun, I.; Ungureanu, M.; Stoicovici, D.

    2017-05-01

    In order to insure passengers’ security and smooth functioning, elevators benefit from speed modeling. The paper aims to compare the evolution of the kinematic parameters (acceleration, speed, amplitude) of the oscillatory movements performed by the suspension ropes of the elevator cabin, considering speed variation at start and stop realized using S - curves generated from arches of parabolic curves. Usually, the functioning cycle of an elevator ends with a short period of constant speed traveling, in order to insure levelling of the cabin. We have already made a comparative analysis of the oscillatory movements of the suspension ropes, considering three varieties of speed modeling: with trapezoidal variation of acceleration, with parabolic variation of acceleration and with cosinusoidal variation of acceleration. The paper aims to analyze the possibility to remove the levelling period, and the impact of this upon the kinematic parameters of the oscillatory movements performed by the suspension ropes. We will take into consideration two possibilities of deceleration: with levelling step and with continuous variation of speed. In both cases, for comparison, the same duration of the acceleration period and deceleration period will be considered.

  9. Application of a validated method in the stability study of colistin sulfate and methylparaben in a veterinary suspension formulation by high-performance liquid chromatography with a diode array detector.

    PubMed

    Pérez-Lozano, Pilar; García-Montoya, Encarna; Orriols, Anna; Miñarro, Montse; Ticó, Josep Ramon; Suñé-Negre, Josep Maria

    2007-01-01

    A methodology following International Cooperation on Harmonization for Veterinary Products (VICH) guidelines for the stability evaluation of colistin sulfate in a nonaqueous suspension pharmaceutical dosage form for veterinary use (via their drinking water) is described. This method monitors the percentage of colistin sulfate during the stability study of the preparation in drinking water and establishes the shelf life of the final product by a new high-performance liquid chromatography method which was developed and validated for the simultaneous determination of colistin sulfate [colistin A (Polymixin E1) and colistin B (Polymixin E2)] and methylparaben (Nipagin) using a diode array detector (DAD). The method uses a Kromasil C18 column and isocratic elution. The mobile phase consisted of an acetonitrile-sodium sulfate anhydrous solution (25 + 75) pumped at a flow rate of 1.5 mL/min. The DAD was set at 215 nm. The validation study was carried out according to the VICH guidelines in order to prove that the new analytical method meets the reliability characteristics, which include the fundamental criteria for validation: selectivity, linearity, precision, accuracy, and sensitivity. The method was applied during the quality control or stability studies of the suspension dosage form in order to quantify the drug (colistin) and preservative, and proved to be suitable for rapid and reliable quality control.

  10. Secretome analysis of differentially induced proteins in rice suspension-cultured cells triggered by rice blast fungus and elicitor.

    PubMed

    Kim, Sun Tae; Kang, Young Hyun; Wang, Yiming; Wu, Jingni; Park, Zee Yong; Rakwal, Randeep; Agrawal, Ganesh Kumar; Lee, Sang Yeol; Kang, Kyu Young

    2009-03-01

    Secreted proteins were investigated in rice suspension-cultured cells treated with rice blast fungus Magnaporthe grisea and its elicitor using biochemical and 2-DE coupled with MS analyses followed by their in planta mRNA expression analysis. M. grisea and elicitor successfully interacted with suspension-cultured cells and prepared secreted proteins from these cultures were essentially intracellular proteins free. Comparative 2-D gel analyses identified 21 differential protein spots due to M. grisea and/or elicitor over control. MALDI-TOF-MS and microLC-ESI-MS/MS analyses of these protein spots revealed that most of assigned proteins were involved in defense such as nine chitinases, two germin A/oxalate oxidases, five domain unknown function 26 (DUF 26) secretory proteins, and beta-expansin. One chitin binding chitinase protein was isolated using chitin binding beads and strong enzymatic activity was identified in an in-gel assay. Interestingly, their protein abundance correlated well at transcript levels in elicitor-treated cultures as judged by semi-quantitative RT-PCR. Each identified differentially expressed protein group was compared at transcript levels in rice leaves inoculated with incompatible (KJ401) and compatible (KJ301) races of M. grisea. Time-course profiling revealed their inductions were stronger and earlier in incompatible than compatible interactions. Identified secreted proteins and their expression correlation at transcript level in suspension-cultured cells and also in planta suggest that suspension-cultured cells can be useful to investigate the secretome of rice blast-pathogen interactions.

  11. Bifurcation analysis of an infinite array of von Karman Streets

    NASA Astrophysics Data System (ADS)

    Ghaemi Oskouei, Babak; Kanso, Eva; Newton, Paul K.

    2008-11-01

    This research investigates the behavior of an infinite array of (inverse) von Karman streets. Primary motivation is to model the wake dynamics in large fish schools. Ignoring the fish we focus on the dynamic interaction of multiple wakes. In particular, we investigate the problem of fluid transport between adjacent vortex streets for its relevance to understanding the transport of oxygen and nutrients to inner fish in large schools as well as understanding flow barriers to passive locomotion. We prove that the configuration of vortices is in relative equilibrium, meaning that the streamline pattern remains steady in the frame moving with vortices. We look at the topology of these streamline patterns plotted in the moving frame which lends insight to fluid transport through the mid-wake region. Fluid is advected along different paths depending on the distance separating two adjacent streets. When the streets are far apart, the dynamics is decoupled and fluid is transported globally between two adjacent streets. When the streets get closer to each other, the number of streets that enter into partnership in transporting fluid among themselves increases. This observation motivates a bifurcation analysis which links the distance between streets to the maximum number of streets transporting fluid among themselves.

  12. Preliminary analysis of the Hellenic geomagnetic array stations' response functions

    NASA Astrophysics Data System (ADS)

    di Fiore, B.; Balasis, G.; Kapiris, P.; Daglis, I. A.; Ganas, A.; Melis, N.

    2009-04-01

    The National Observatory of Athens currently operates the HellENIc GeoMagnetic Array (ENIGMA), an array of 4 ground-based magnetometer stations in the area of south-eastern Europe (central and southern Greece). Based on one year (2008) of vector magnetic field data, recorded at the various array sites, magnetic response function estimates are inferred at 5 s - 2048 s. The magnetic response functions are then viewed as real and imaginary induction arrows, detecting sharp conductivity boundaries and providing a picture of the geometry of regional conductors. First results from efforts on inversion and modelling of the ENIGMA magnetic response functions will also be discussed.

  13. Faster Array Training and Rapid Analysis for a Sensor Array Intended for an Event Monitor in Air

    NASA Technical Reports Server (NTRS)

    Homer, Margie L.; Shevade, A. V.; Fonollosa, J.; Huerta, R.

    2013-01-01

    Environmental monitoring, in particular, air monitoring, is a critical need for human space flight. Both monitoring and life support systems have needs for closed loop process feedback and quality control for environmental factors. Monitoring protects the air environment and water supply for the astronaut crew and different sensors help ensure that the habitat falls within acceptable limits, and that the life support system is functioning properly and efficiently. The longer the flight duration and the farther the destination, the more critical it becomes to have carefully monitored and automated control systems for life support. There is an acknowledged need for an event monitor which samples the air continuously and provides near real-time information on changes in the air. Past experiments with the JPL ENose have demonstrated a lifetime of the sensor array, with the software, of around 18 months. We are working on a sensor array and new algorithms that will incorporate transient sensor responses in the analysis. Preliminary work has already showed more rapid quantification and identification of analytes and the potential for faster training time of the array. We will look at some of the factors that contribute to demonstrating faster training time for the array. Faster training will decrease the integrated sensor exposure to training analytes, which will also help extend sensor lifetime.

  14. Reliability analysis of the solar array based on Fault Tree Analysis

    NASA Astrophysics Data System (ADS)

    Jianing, Wu; Shaoze, Yan

    2011-07-01

    The solar array is an important device used in the spacecraft, which influences the quality of in-orbit operation of the spacecraft and even the launches. This paper analyzes the reliability of the mechanical system and certifies the most vital subsystem of the solar array. The fault tree analysis (FTA) model is established according to the operating process of the mechanical system based on DFH-3 satellite; the logical expression of the top event is obtained by Boolean algebra and the reliability of the solar array is calculated. The conclusion shows that the hinges are the most vital links between the solar arrays. By analyzing the structure importance(SI) of the hinge's FTA model, some fatal causes, including faults of the seal, insufficient torque of the locking spring, temperature in space, and friction force, can be identified. Damage is the initial stage of the fault, so limiting damage is significant to prevent faults. Furthermore, recommendations for improving reliability associated with damage limitation are discussed, which can be used for the redesigning of the solar array and the reliability growth planning.

  15. Phased Array Analysis Using a Modified Chebyshev Approach

    DTIC Science & Technology

    2005-11-01

    define Parray as the average power of the array, Aarray as the effective area of the array, Pelement as the average power of the unweighted element...signal to noise ratio is: (SNR)weighted = Parray Narray = [ N∑ i=1 ãt,iãr,i ]2 [ N∑ i=1 ã2r,i ] (SNR)element (43) where (SNR)element = Pelement

  16. Wave-front analysis using Fresnel lens arrays.

    PubMed

    Spektor, B; Shamir, J

    1995-07-01

    A compact wave-front sensor is implemented by an array of two-beam common path inversion interferometers. Each element of the array consists of two Fresnel lenses in a confocal configuration. The wave-front data can be extracted from a superposition of the zero-order undiffracted wave and the twice-diffracted first-order wave. The result is a high-sensitivity, compact, and stable interferometric wave-front sensor.

  17. Specificity analysis of protein lysine methyltransferases using SPOT peptide arrays.

    PubMed

    Kudithipudi, Srikanth; Kusevic, Denis; Weirich, Sara; Jeltsch, Albert

    2014-11-29

    Lysine methylation is an emerging post-translation modification and it has been identified on several histone and non-histone proteins, where it plays crucial roles in cell development and many diseases. Approximately 5,000 lysine methylation sites were identified on different proteins, which are set by few dozens of protein lysine methyltransferases. This suggests that each PKMT methylates multiple proteins, however till now only one or two substrates have been identified for several of these enzymes. To approach this problem, we have introduced peptide array based substrate specificity analyses of PKMTs. Peptide arrays are powerful tools to characterize the specificity of PKMTs because methylation of several substrates with different sequences can be tested on one array. We synthesized peptide arrays on cellulose membrane using an Intavis SPOT synthesizer and analyzed the specificity of various PKMTs. Based on the results, for several of these enzymes, novel substrates could be identified. For example, for NSD1 by employing peptide arrays, we showed that it methylates K44 of H4 instead of the reported H4K20 and in addition H1.5K168 is the highly preferred substrate over the previously known H3K36. Hence, peptide arrays are powerful tools to biochemically characterize the PKMTs.

  18. Specificity Analysis of Protein Lysine Methyltransferases Using SPOT Peptide Arrays

    PubMed Central

    Kudithipudi, Srikanth; Kusevic, Denis; Weirich, Sara; Jeltsch, Albert

    2014-01-01

    Lysine methylation is an emerging post-translation modification and it has been identified on several histone and non-histone proteins, where it plays crucial roles in cell development and many diseases. Approximately 5,000 lysine methylation sites were identified on different proteins, which are set by few dozens of protein lysine methyltransferases. This suggests that each PKMT methylates multiple proteins, however till now only one or two substrates have been identified for several of these enzymes. To approach this problem, we have introduced peptide array based substrate specificity analyses of PKMTs. Peptide arrays are powerful tools to characterize the specificity of PKMTs because methylation of several substrates with different sequences can be tested on one array. We synthesized peptide arrays on cellulose membrane using an Intavis SPOT synthesizer and analyzed the specificity of various PKMTs. Based on the results, for several of these enzymes, novel substrates could be identified. For example, for NSD1 by employing peptide arrays, we showed that it methylates K44 of H4 instead of the reported H4K20 and in addition H1.5K168 is the highly preferred substrate over the previously known H3K36. Hence, peptide arrays are powerful tools to biochemically characterize the PKMTs. PMID:25489813

  19. Preparation of Single-cell Suspensions for Cytofluorimetric Analysis from Different Mouse Skin Regions.

    PubMed

    Broggi, Achille; Cigni, Clara; Zanoni, Ivan; Granucci, Francesca

    2016-04-20

    The skin is a barrier organ that interacts with the external environment. Being continuously exposed to potential microbial invasion, the dermis and epidermis home a variety of immune cells in both homeostatic and inflammatory conditions. Tools to obtain skin cell release for cytofluorimetric analyses are, therefore, very useful in order to study the complex network of immune cells residing in the skin and their response to microbial stimuli. Here, we describe an efficient methodology for the digestion of mouse skin to rapidly and efficiently obtain single-cell suspensions. This protocol allows maintenance of maximum cell viability without compromising surface antigen expression. We also describe how to take and digest skin samples from different anatomical locations, such as the ear, trunk, tail, and footpad. The obtained suspensions are then stained and analyzed by flow cytometry to discriminate between different leukocyte populations.

  20. Solid-phase extraction and HPLC analysis of methylparaben and propylparaben in a concentrated antibiotic suspension.

    PubMed

    Rebbeck, Christine; Hammond, Richard; Wong, Joseph; Nair, Lakshmy; Raghavan, Neervalur; Hepler, Doug; Campbell, William; Lynn, Randy

    2006-10-01

    An accurate and precise solid-phase extraction coupled with high performance liquid chromatography (SPE/HPLC) method developed for the quantification of antimicrobial preservatives (methylparaben and propylparaben) in oxytetracycline injectable suspension is described in this article. The SPE technique was necessary to quantify the preservatives since the high concentration of the drug and excipients was masking low levels of preservatives, making quantification difficult. This developed HPLC method was stability-indicating and found to be linear between 1.3 to 2.4 mg/mL for methylparaben and 0.15 to 0.27 mg/mL for propylparaben in this concentrated antibiotic suspension formulation. The extraction recoveries were 98.8-101.6%. System precision and sample extraction precision (RSD) were less than 1%.

  1. Random vibrations of quadratic damping systems. [optimum damping analysis for automobile suspension system

    NASA Technical Reports Server (NTRS)

    Sireteanu, T.

    1974-01-01

    An oscillating system with quadratic damping subjected to white noise excitation is replaced by a nonlinear, statistically equivalent system for which the associated Fokker-Planck equation can be exactly solved. The mean square responses are calculated and the optimum damping coefficient is determined with respect to the minimum mean square acceleration criteria. An application of these results to the optimization of automobile suspension damping is given.

  2. Random vibrations of quadratic damping systems. [optimum damping analysis for automobile suspension system

    NASA Technical Reports Server (NTRS)

    Sireteanu, T.

    1974-01-01

    An oscillating system with quadratic damping subjected to white noise excitation is replaced by a nonlinear, statistically equivalent system for which the associated Fokker-Planck equation can be exactly solved. The mean square responses are calculated and the optimum damping coefficient is determined with respect to the minimum mean square acceleration criteria. An application of these results to the optimization of automobile suspension damping is given.

  3. Studies on Rapidly Frozen Suspensions of Yeast Cells by Differential Thermal Analysis and Conductometry

    PubMed Central

    Mazur, Peter

    1963-01-01

    Few, if any, yeast cells survived rapid cooling to -196°C and subsequent slow warming. After rapid freezing, the suspensions absorbed latent heat of fusion between -15° and 0°C during warming, and the relation between the amount of heat absorbed and the concentration of cells was the same as that in equivalent KCl solutions, indicating that frozen suspensions behave thermally like frozen solutions. The amount of heat absorbed was such that more than 80 per cent of the intracellular solution had to be frozen. The conductometric behavior of frozen suspensions showed that cell solutes were still inside the cells and surrounded by an intact cell membrane at the time heat was being absorbed. Two models are consistent with these findings. The first assumes that intracellular freezing has taken place; the second that all freezable water has left the cells and frozen externally. The latter model is ruled out because rapidly cooled cells do not shrink by an amount equal to the volume of water that would have to be withdrawn to prevent internal freezing. PMID:13934216

  4. Design and analysis of a shock absorber with variable moment of inertia for passive vehicle suspensions

    NASA Astrophysics Data System (ADS)

    Xu, Tongyi; Liang, Ming; Li, Chuan; Yang, Shuai

    2015-10-01

    A two-terminal mass (TTM) based vibration absorber with variable moment of inertia (VMI) for passive vehicle suspension is proposed. The VMI of the system is achieved by the motion of sliders embedded in a hydraulic driven flywheel. The moment of inertia increases in reaction to strong vertical vehicle oscillations and decreases for weak vertical oscillations. The hydraulic mechanism of the system converts the relative linear motion between the two terminals of the suspension into rotating motion of the flywheel. In the case of stronger vehicle vertical oscillation, the sliders inside the flywheel move away from the center of the flywheel because of the centrifugal force, hence yielding higher moment of inertia. The opposite is true in the case of weaker vehicle oscillation. As such, the moment of inertia adjusts itself adaptively in response to the road conditions. The performance of the proposed TTM-VMI absorber has been analyzed via dynamics modeling and simulation and further examined by experiments. In comparison to its counterpart with constant moment of inertia, the proposed VMI system offers faster response, better road handling and safety, improved ride comfort, and reduced suspension deflection except in the case of sinusoidal excitations.

  5. Analysis of backwashing efficiency in dead-end hollow-fibre ultrafiltration of anaerobic suspensions.

    PubMed

    Vera, Luisa; González, Enrique; Ruigómez, Ignacio; Gómez, Jenniffer; Delgado, Sebastián

    2015-11-01

    A novel dead-end mode operation for filtering anaerobic suspensions was investigated. In this mode, the filtration system automatically adjusted backwashing frequency to a preselected transmembrane pressure set-point. This paper discusses the effectiveness of the backwashing conditions on membrane fouling. Anaerobic suspensions from a conventional wastewater treatment plant digester were used as model suspensions for the trials carried out at lab-scale. Gas sparging aided backwashing significantly enhanced membrane cleaning efficiency. No effect of gas sparging on internal fouling was detected. Also, the cleaning efficiency linearly decreased with permeate flux. Nevertheless, due to a high increase in the reversible fouling, a reasonable net permeate flux (7.2-6.8 L/h m(2)) can be achieved when intermediate fluxes (12-16 L/h m(2)) were imposed and the higher transmembrane pressure set-point value (50 kPa) was applied. Both backwashing duration and flux exhibited similar influence on cake fouling removal for a given volume of permeate produced.

  6. Modeled Analysis of Entrance of Colloid Suspensions into the Middle Ear Cavity.

    PubMed

    Ariana, Bahar; Geerse, Simon; Schot, Linda J; Bos, Lieuwe D J

    2016-05-01

    Otic suspensions have a positive effect on the duration of otorrhea in children with a tympanostomy tube. It is still questionable how eardrops reach the middle ear. We hypothesized that otic suspensions do not pass the tympanostomy tube if the middle ear is dry but pass by diffusion when wet. The median concentration of Evans blue (colorant) in the middle ear was <15.6 mg/mL (lower limit of quantification) when diffusion was impossible but 45.3 µg/mL when diffusion was possible (P = .01). When the outward flow was increased to 0.1 mL/h, the concentration of Evans blue in the middle ear increased significantly (P = .03). With further-increasing outward flows, the concentration of Evans blue decreased linearly (β = -144, P < .001, R (2) = 0.44). We conclude that diffusion is the mechanism by which otic suspensions enter the middle ear in children with tympanostomy tubes and otorrhea. © American Academy of Otolaryngology—Head and Neck Surgery Foundation 2016.

  7. Depletion stabilization in nanoparticle-polymer suspensions: multi-length-scale analysis of microstructure.

    PubMed

    Kim, Sunhyung; Hyun, Kyu; Moon, Joo Yong; Clasen, Christian; Ahn, Kyung Hyun

    2015-02-17

    We study the mechanism of depletion stabilization and the resultant microstructure of aqueous suspensions of nanosized silica and poly(vinyl alcohol) (PVA). Rheology, small-angle light scattering (SALS), and small-angle X-ray scattering (SAXS) techniques enable us to analyze the microstructure at broad length scale from single particle size to the size of a cluster of aggregated particles. As PVA concentration increases, the microstructure evolves from bridging flocculation, steric stabilization, depletion flocculation to depletion stabilization. To our surprise, when depletion stabilization occurs, the suspension shows the stabilization at the cluster length scale, while maintaining fractal aggregates at the particle length scale. This sharply contrasts previously reported studies on the depletion stabilization of microsized particle and polymer suspensions, which exhibits the stabilization at the particle length scale. On the basis of the evaluation of depletion interaction, we propose that the depletion energy barrier exists between clusters rather than particles due to the comparable size of silica particle and the radius gyration of PVA.

  8. Design and Analysis of the Warm-To Suspension Links for Jefferson Lab's 11 Gev/c Super High Momentum Spectrometer

    NASA Astrophysics Data System (ADS)

    Sun, E.; Brindza, P.; Lassiter, S.; Fowler, M.

    2010-04-01

    This paper describes design and analysis performed for the warm-to-cold suspension links of the warm iron yoke superconducting quadrupole magnets, and superconducting dipole magnet. The results of investigation of titanium Ti-6Al-4V and Nitronic 50 stainless steel for the suspension links to support the cold mass, preloads, forces due to cryogenic temperature, and imbalanced magnetic forces from misalignments are presented. Allowable stresses at normal-case scenarios and worst-case scenarios, space constraints, and heat leak considerations are discussed. Principles of the ASME Pressure Vessel Code were used to determine allowable stresses. Optimal angles of the suspension links were obtained by calculation and finite element methods. The stress levels of suspension links at multiple scenarios are presented, discussed, and compared with the allowable stresses.

  9. A Rayleigh Wave Analysis at the DESERT Broadband Array

    NASA Astrophysics Data System (ADS)

    Laske, G.; Desert Team

    2003-12-01

    A variety of geophysical experiments conducted in the 2000/2001 DESERT project in Israel, Palestine and Jordan provided a rich palette of datasets to examine the crust and uppermost mantle beneath one of Earth's most prominent fault systems, the Dead Sea Transform system (DST). As part of the passive seismic component, thirty broad--band sensors were deployed across the DST for roughly one year. During this deployment we recorded 115 teleseismic earthquakes that are suitable for a fundamental mode surface wave analysis at intermediate periods (20-120s). Analyzing arrival angle measurements we are able to determine the orientation of the horizontal components to within one degree. Some sensors were misaligned by nearly 10 degrees which is confirmed by the station operators (e.g. one station was oriented parallel to a road because the compass broke). The frequency--dependent Rayleigh wave phase at each station is measured with respect to each other rather than relative to a synthetic. This results in a much more precise dataset than what is common for global dispersion datasets. A preliminary analysis reveals a seismically fast but thin lid (about 80~km) to the west of the DST. Toward the east, shallow seismic velocities are low while a deeper low velocity zone is not detected. This contradicts the currently favored thermo-mechanical model for the DST that predicts lithospheric thinning toward the east. Unfortunately, the distribution of sensors at the array was not ideal for a surface wave analysis. The stations west of the DST were equipped with true broad-band sensors (Streckeisen STS-2 or Guralp CMT-3T), while the stations east of the DST were equipped with ''wideband'' Guralp-40T that are considerably noisy at periods longer than 40s. We we able to measure dispersion down to 80~s, sometimes below that, depending on the size of the earthquake, but not for all earthquakes. Dispersion at these periods are needed to trace the bottom of the lithosphere. The apparent

  10. Array Independent Component Analysis with Application to Remote Sensing

    NASA Astrophysics Data System (ADS)

    Kukuyeva, Irina A.

    2012-11-01

    There are three ways to learn about an object: from samples taken directly from the site, from simulation studies based on its known scientific properties, or from remote sensing images. All three are carried out to study Earth and Mars. Our goal, however, is to learn about the second largest storm on Jupiter, called the White Oval, whose characteristics are unknown to this day. As Jupiter is a gas giant and hundreds of millions of miles away from Earth, we can only make inferences about the planet from retrieval algorithms and remotely sensed images. Our focus is to find latent variables from the remotely sensed data that best explain its underlying atmospheric structure. Principal Component Analysis (PCA) is currently the most commonly employed technique to do so. For a data set with more than two modes, this approach fails to account for all of the variable interactions, especially if the distribution of the variables is not multivariate normal; an assumption that is rarely true of multispectral images. The thesis presents an overview of PCA along with the most commonly employed decompositions in other fields: Independent Component Analysis, Tucker-3 and CANDECOMP/PARAFAC and discusses their limitations in finding unobserved, independent structures in a data cube. We motivate the need for a novel dimension reduction technique that generalizes existing decompositions to find latent, statistically independent variables for one side of a multimodal (number of modes greater than two) data set while accounting for the variable interactions with its other modes. Our method is called Array Independent Component Analysis (AICA). As the main question of any decomposition is how to select a small number of latent variables that best capture the structure in the data, we extend the heuristic developed by Ceulemans and Kiers in [10] to aid in model selection for the AICA framework. The effectiveness of each dimension reduction technique is determined by the degree of

  11. Magnetotelluric array data analysis from north-west Fennoscandia

    NASA Astrophysics Data System (ADS)

    Cherevatova, M.; Smirnov, M. Yu.; Jones, A. G.; Pedersen, L. B.; Becken, M.; Biolik, M.; Cherevatova, M.; Ebbing, J.; Gradmann, S.; Gurk, M.; Hübert, J.; Jones, A. G.; Junge, A.; Kamm, J.; Korja, T.; Lahti, I.; Löwer, A.; Nittinger, C.; Pedersen, L. B.; Savvaidis, A.; Smirnov, M.

    2015-06-01

    New magnetotelluric (MT) data in north-west Fennoscandia were acquired within the framework of the project "Magnetotellurics in the Scandes" (MaSca). The project focuses on the investigation of the crustal and upper mantle lithospheric structure in the transition zone from stable Precambrian cratonic interior to passive continental margin beneath the Caledonian orogen and the Scandinavian Mountains in western Fennoscandia. An array of 59 synchronous long period and 220 broad-band MT sites was occupied in the summers of 2011 to 2013. We estimated MT transfer functions in the period range from 0.003 to 105 s. The Q-function multi-site multi-frequency analysis and the phase tensor were used to estimate strike and dimensionality of MT data. Dimensionality and strike analyses indicate generally 2-D behaviour of the data with 3-D effects at some sites and period bands. In this paper we present 2-D inversion of the data, 3-D inversion models are shown in the parallel paper. We choose to invert the determinant of the impedance tensor to mitigate 3-D effects in the data on our 2-D models. Seven crustal-scale and four lithospheric-scale 2-D models are presented. The resistive regions are images of the Archaean and Proterozoic basement in the east and thin Caledonian nappes in the west. The middle and lower crust of the Svecofennian province is conductive. The southern end of the Kittilä Greenstone Belt is seen in the models as a strong upper to middle crustal conductor. In the Caledonides, the highly conductive alum shales are observed along the Caledonian Thrust Front. The thickest lithosphere is in the Palaeoproterozioc Svecofennian Domain, not in the Archaean. The thickness of the lithosphere is around 200 km in the north and 300 km in the south-west.

  12. Coherence analysis using canonical coordinate decomposition with applications to sparse processing and optimal array deployment

    NASA Astrophysics Data System (ADS)

    Azimi-Sadjadi, Mahmood R.; Pezeshki, Ali; Wade, Robert L.

    2004-09-01

    Sparse array processing methods are typically used to improve the spatial resolution of sensor arrays for the estimation of direction of arrival (DOA). The fundamental assumption behind these methods is that signals that are received by the sparse sensors (or a group of sensors) are coherent. However, coherence may vary significantly with the changes in environmental, terrain, and, operating conditions. In this paper canonical correlation analysis is used to study the variations in coherence between pairs of sub-arrays in a sparse array problem. The data set for this study is a subset of an acoustic signature data set, acquired from the US Army TACOM-ARDEC, Picatinny Arsenal, NJ. This data set is collected using three wagon-wheel type arrays with five microphones. The results show that in nominal operating conditions, i.e. no extreme wind noise or masking effects by trees, building, etc., the signals collected at different sensor arrays are indeed coherent even at distant node separation.

  13. Microchannel-free collection and single-cell isolation of yeast cells in a suspension using liquid standing wave

    NASA Astrophysics Data System (ADS)

    Matsutani, Akihiro; Takada, Ayako

    2016-11-01

    We demonstrate a microchannel-free collection method at nodes of liquid standing waves by the vertical vibration of a suspension including yeast cells. The pattern formation of the collection of cells using standing waves in a suspension was investigated by varying the frequency and waveform of vibrations. The single-cell isolation of yeast cells was achieved using a microenclosure array set at the nodes. In addition, we succeeded in the microchannel-free collection of yeast cells in a suspension, where patterns were formed by tapping vibration. The proposed technique is very simple and we believe that it will be useful for single-cell analysis and investigation.

  14. A Unified Approach to the Analysis and Synthesis of Systolic Arrays.

    DTIC Science & Technology

    1985-04-01

    ANALYSIS AND SYNTHESIS OF SYSTOLIC ARRAYS... Analysis and Synthesis of Systolic Arrays N/A N/A N/A N/A 12. PERSONAL AUTHOR($) Hornick, Scot Wayne 13&. TYP OF REPORT K-J 1131L TIME COVERIO 14. OATS OF...frame- work to unify the analysis and synthesis of systolic networks. We describe a class of transformations on systolic networks that alter

  15. Array2BIO: A Comprehensive Suite of Utilities for the Analysis of Microarray Data

    SciTech Connect

    Loots, G G; Chain, P G; Mabery, S; Rasley, A; Garcia, E; Ovcharenko, I

    2006-02-13

    We have developed an integrative and automated toolkit for the analysis of Affymetrix microarray data, named Array2BIO. It identifies groups of coexpressed genes using two complementary approaches--comparative analysis of signal versus control microarrays and clustering analysis of gene expression across different conditions. The identified genes are assigned to functional categories based on the Gene Ontology classification, and a detection of corresponding KEGG protein interaction pathways. Array2BIO reliably handles low-expressor genes and provides a set of statistical methods to quantify the odds of observations, including the Benjamini-Hochberg and Bonferroni multiple testing corrections. Automated interface with the ECR Browser provides evolutionary conservation analysis of identified gene loci while the interconnection with Creme allows high-throughput analysis of human promoter regions and prediction of gene regulatory elements that underlie the observed expression patterns. Array2BIO is publicly available at http://array2bio.dcode.org.

  16. Biomechanical analysis of acromioclavicular joint dislocation repair using coracoclavicular suspension devices in two different configurations.

    PubMed

    Abat, Ferran; Sarasquete, Juan; Natera, Luis Gerardo; Calvo, Ángel; Pérez-España, Manuel; Zurita, Néstor; Ferrer, Jesús; del Real, Juan Carlos; Paz-Jimenez, Eva; Forriol, Francisco

    2015-09-01

    The best treatment option for some acromioclavicular (AC) joint dislocations is controversial. For this reason, the aim of this study was to evaluate the vertical biomechanical behavior of two techniques for the anatomic repair of coracoclavicular (CC) ligaments after an AC injury. Eighteen human cadaveric shoulders in which repair using a coracoclavicular suspension device was initiated after injury to the acromioclavicular joint were included in the study. Three groups were formed; group I (n = 6): control; group II (n = 6): repair with a double tunnel in the clavicle and in the coracoid (with two CC suspension devices); group III (n = 6): repair in a "V" configuration with two tunnels in the clavicle and one in the coracoid (with one CC suspension device). The biomechanical study was performed with a universal testing machine (Electro Puls 3000, Instron, Boulder, MA, USA), with the clamping jaws set in a vertical position. The force required for acromioclavicular reconstruction system failure was analyzed for each cadaveric piece. Group I reached a maximum force to failure of 635.59 N (mean 444.0 N). The corresponding force was 939.37 N (mean 495.6 N) for group II and 533.11 N (mean 343.9 N) for group III. A comparison of the three groups did not find any significant difference despite the loss of resistance presented by group III. Anatomic repair of coracoclavicular ligaments with a double system (double tunnel in the clavicle and in the coracoid) permits vertical translation that is more like that of the acromioclavicular joint. Acromioclavicular repair in a "V" configuration does not seem to be biomechanically sufficient.

  17. Biomedical analysis of rat body hair after hindlimb suspension for 14 days

    NASA Astrophysics Data System (ADS)

    Terada, Masahiro; Kawano, Fuminori; Ishioka, Noriaki; Higashibata, Akira; Majima, Hideyuki J.; Yamazaki, Takashi; Watanabe-Asaka, Tomomi; Niihori, Maki; Nakao, Reiko; Yamada, Shin; Mukai, Chiaki; Ohira, Yoshinobu

    2012-04-01

    The levels of 26 minerals in rat body hair were analyzed in control and hindlimb-suspended Wistar Hannover rats (n=5 each). We quantified the levels of 22 minerals in this experiment. However, we were unable to measure the levels of 4 minerals (Be, V, Cd, and Hg) quantitatively because they were below the limit of detection. Of the 22 quantified, the levels of 19 minerals were not significantly different between control and hindlimb-suspended groups. The levels of 3 minerals (Pb, Cr, and Al) tended to be higher in the hindlimb-suspended group than in the control group; however, this difference was not significant. The concentrations of 3 other minerals (I, K, and Mg) were significantly different between the 2 groups. The iodine (I) level was 58.2% higher in the hindlimb-suspended group than in the control group (P<0.05). Potassium (K) and magnesium (Mg) levels were 55.2% and 20.4% lower, respectively, in the experimental group (P<0.05 in both cases). These results indicate that a physiological change in mineral metabolism resulting from physical or mental stress, such as hindlimb suspension, is reflected in body hair. The Japan Aerospace Exploration Agency (JAXA) has initiated a human research study to investigate the effects of long-term space flight on gene expression and mineral metabolism by analyzing hair samples of astronauts who stayed in the International Space Station (ISS) for 6 months. We believe that hindlimb suspension for 14 days can simulate the effects of an extremely severe environment, such as space flight, because the hindlimb suspension model elicits a rapid physiological change in skeletal muscle, bone, and fluid shift even in the short term. These results also suggest that we can detect various effects on the body by analyzing the human scalp hair shaft.

  18. Stability Analysis of the Buck-Boost Type Solar Array Regulator

    NASA Astrophysics Data System (ADS)

    Yang, Jeong-Hwan; Yoon, Seok-Teak; Park, Hee-Sung; Park, Sung-Woo; Koo, Ja-Chun; Jang, Jin-Baek; Lee, Sang-Kon

    2014-08-01

    The SAR (Solar Array Regulator) is different from a general DC-DC Converter. The input of the SAR is connected to the solar array and the output is connected to the battery. So, the output voltage of the SAR is constant and the input voltage of the SAR is variable. And the solar array current which is the SAR input current is variable according to the solar array voltage. Therefore, the SAR is influenced by the electrical characteristic of the solar array. For these reasons, a small signal model for a general DC-DC converter cannot be applied to the SAR for the stability analysis. In this paper, the small signal model of the BUCK-BOOST type SAR (BBSAR) is introduced and its transfer functions are induced. Using small signal transfer functions, the stability analysis is performed and its results are compared to the simulation result.

  19. Nonlinear analysis and performance evaluation of the Annular Suspension and Pointing System (ASPS)

    NASA Technical Reports Server (NTRS)

    Joshi, S. M.

    1978-01-01

    The Annular Suspension and Pointing System (ASPS) can provide high accurate fine pointing for a variety of solar-, stellar-, and Earth-viewing scientific instruments during space shuttle orbital missions. In this report, a detailed nonlinear mathematical model is developed for the ASPS/Space Shuttle system. The equations are augmented with nonlinear models of components such as magnetic actuators and gimbal torquers. Control systems and payload attitude state estimators are designed in order to obtain satisfactory pointing performance, and statistical pointing performance is predicted in the presence of measurement noise and disturbances.

  20. Digital controller design: Analysis of the annular suspension pointing system. [analog controllers with feedback

    NASA Technical Reports Server (NTRS)

    Kuo, B. C.

    1978-01-01

    The analog controllers of the annular suspension pointing system are designed for control of the chi, phi sub 1, and phi sub 2 bandwidth dynamics through decoupling and pole placement. Since it is virtually impossible to find an equivalent bandwidth of the overall system and establish a general eigenvalue requirement for the system, the subsystem dynamics are decoupled through state feedback and the poles are placed simultaneously to realize the desired bandwidths for the three system components. Decoupling and pole placement are also used to design the closed-loop digital system through approximation.

  1. [Particle Size and Number Density Online Analysis for Particle Suspension with Polarization-Differentiation Elastic Light Scattering Spectroscopy].

    PubMed

    Chen, Wei-kang; Fang, Hui

    2016-03-01

    The basic principle of polarization-differentiation elastic light scattering spectroscopy based techniques is that under the linear polarized light incidence, the singlely scattered light from the superficial biological tissue and diffusively scattered light from the deep tissue can be separated according to the difference of polarization characteristics. The novel point of the paper is to apply this method to the detection of particle suspension and, to realize the simultaneous measurement of its particle size and number density in its natural status. We design and build a coaxial cage optical system, and measure the backscatter signal at a specified angle from a polystyrene microsphere suspension. By controlling the polarization direction of incident light with a linear polarizer and adjusting the polarization direction of collected light with another linear polarizer, we obtain the parallel polarized elastic light scattering spectrum and cross polarized elastic light scattering spectrum. The difference between the two is the differential polarized elastic light scattering spectrum which include only the single scattering information of the particles. We thus compare this spectrum to the Mie scattering calculation and extract the particle size. We then also analyze the cross polarized elastic light scattering spectrum by applying the particle size already extracted. The analysis is based on the approximate expressions taking account of light diffusing, from which we are able to obtain the number density of the particle suspension. We compare our experimental outcomes with the manufacturer-provided values and further analyze the influence of the particle diameter standard deviation on the number density extraction, by which we finally verify the experimental method. The potential applications of the method include the on-line particle quality monitoring for particle manufacture as well as the fat and protein density detection of milk products.

  2. CRSP Hyperspectral Stripe Array Targets: Preliminary Results and Analysis

    NASA Technical Reports Server (NTRS)

    Terrie, Gregory; Jenner, Jeff; Tate, Steve; Muston, Shaun; Schaefer, Jason; Grant, Brennan; Sellers, Richard

    2000-01-01

    Objectives of this program: Assess the capability of a spaceborne hyperspectral sensor/algorithm system to perform target detection; Provide information to guide the design and construction of surrogate targets and stripe arrays; Target development cost of less than 50,000.

  3. Microcantilever array instrument based on optical fiber and performance analysis

    NASA Astrophysics Data System (ADS)

    Zhang, Guangping; Wu, Lin; Li, Chao; Wu, Shangquan; Zhang, Qingchuan

    2017-07-01

    We developed a microcantilever array biosensor instrument based on optical readout from a microcantilever array in fluid environment. The microcantilever signals were read out sequentially by laser beams emitted from eight optical fibers. The optical fibers were coupled to lasers, while the other ends of the fibers were embedded in eight V-grooves with 250 μm pitch microfabricated from a Si wafer. Aspherical lens was used to keep the distance between lasers. A programmable logic controller was used to make the system work stably. To make sure that the output of lasers was stable, a temperature controller was set up for each laser. When the deflection signal was collected, lasers used here were set to be on for at least 400 ms in each scanning cycle to get high signal-to-noise ratio deflection curves. A test was performed by changing the temperature of the liquid cell holding a microcantilever array to verify the consistent response of the instrument to the cantilever deflections. The stability and conformance of the instrument were demonstrated by quantitative detection of mercury ions in aqueous solution and comparison detection of clenbuterol by setting test and reference cantilevers. This microcantilever array detection instrument can be applied to highly sensitive detection of chemical and biological molecules in fluid environment.

  4. CRSP Hyperspectral Stripe Array Targets: Preliminary Results and Analysis

    NASA Technical Reports Server (NTRS)

    Terrie, Gregory; Jenner, Jeff; Tate, Steve; Muston, Shaun; Schaefer, Jason; Grant, Brennan; Sellers, Richard

    2000-01-01

    Objectives of this program: Assess the capability of a spaceborne hyperspectral sensor/algorithm system to perform target detection; Provide information to guide the design and construction of surrogate targets and stripe arrays; Target development cost of less than 50,000.

  5. Analysis and simulation tools for solar array power systems

    NASA Astrophysics Data System (ADS)

    Pongratananukul, Nattorn

    This dissertation presents simulation tools developed specifically for the design of solar array power systems. Contributions are made in several aspects of the system design phases, including solar source modeling, system simulation, and controller verification. A tool to automate the study of solar array configurations using general purpose circuit simulators has been developed based on the modeling of individual solar cells. Hierarchical structure of solar cell elements, including semiconductor properties, allows simulation of electrical properties as well as the evaluation of the impact of environmental conditions. A second developed tool provides a co-simulation platform with the capability to verify the performance of an actual digital controller implemented in programmable hardware such as a DSP processor, while the entire solar array including the DC-DC power converter is modeled in software algorithms running on a computer. This "virtual plant" allows developing and debugging code for the digital controller, and also to improve the control algorithm. One important task in solar arrays is to track the maximum power point on the array in order to maximize the power that can be delivered. Digital controllers implemented with programmable processors are particularly attractive for this task because sophisticated tracking algorithms can be implemented and revised when needed to optimize their performance. The proposed co-simulation tools are thus very valuable in developing and optimizing the control algorithm, before the system is built. Examples that demonstrate the effectiveness of the proposed methodologies are presented. The proposed simulation tools are also valuable in the design of multi-channel arrays. In the specific system that we have designed and tested, the control algorithm is implemented on a single digital signal processor. In each of the channels the maximum power point is tracked individually. In the prototype we built, off

  6. ArrayQuest: a web resource for the analysis of DNA microarray data

    PubMed Central

    Argraves, Gary L; Jani, Saurin; Barth, Jeremy L; Argraves, W Scott

    2005-01-01

    Background Numerous microarray analysis programs have been created through the efforts of Open Source software development projects. Providing browser-based interfaces that allow these programs to be executed over the Internet enhances the applicability and utility of these analytic software tools. Results Here we present ArrayQuest, a web-based DNA microarray analysis process controller. Key features of ArrayQuest are that (1) it is capable of executing numerous analysis programs such as those written in R, BioPerl and C++; (2) new analysis programs can be added to ArrayQuest Methods Library at the request of users or developers; (3) input DNA microarray data can be selected from public databases (i.e., the Medical University of South Carolina (MUSC) DNA Microarray Database or Gene Expression Omnibus (GEO)) or it can be uploaded to the ArrayQuest center-point web server into a password-protected area; and (4) analysis jobs are distributed across computers configured in a backend cluster. To demonstrate the utility of ArrayQuest we have populated the methods library with methods for analysis of Affymetrix DNA microarray data. Conclusion ArrayQuest enables browser-based implementation of DNA microarray data analysis programs that can be executed on a Linux-based platform. Importantly, ArrayQuest is a platform that will facilitate the distribution and implementation of new analysis algorithms and is therefore of use to both developers of analysis applications as well as users. ArrayQuest is freely available for use at . PMID:16321157

  7. ArrayQuest: a web resource for the analysis of DNA microarray data.

    PubMed

    Argraves, Gary L; Jani, Saurin; Barth, Jeremy L; Argraves, W Scott

    2005-12-01

    Numerous microarray analysis programs have been created through the efforts of Open Source software development projects. Providing browser-based interfaces that allow these programs to be executed over the Internet enhances the applicability and utility of these analytic software tools. Here we present ArrayQuest, a web-based DNA microarray analysis process controller. Key features of ArrayQuest are that (1) it is capable of executing numerous analysis programs such as those written in R, BioPerl and C++; (2) new analysis programs can be added to ArrayQuest Methods Library at the request of users or developers; (3) input DNA microarray data can be selected from public databases (i.e., the Medical University of South Carolina (MUSC) DNA Microarray Database or Gene Expression Omnibus (GEO)) or it can be uploaded to the ArrayQuest center-point web server into a password-protected area; and (4) analysis jobs are distributed across computers configured in a backend cluster. To demonstrate the utility of ArrayQuest we have populated the methods library with methods for analysis of Affymetrix DNA microarray data. ArrayQuest enables browser-based implementation of DNA microarray data analysis programs that can be executed on a Linux-based platform. Importantly, ArrayQuest is a platform that will facilitate the distribution and implementation of new analysis algorithms and is therefore of use to both developers of analysis applications as well as users. ArrayQuest is freely available for use at http://proteogenomics.musc.edu/arrayquest.html.

  8. Data Quality Analysis for the Bighorn Arch Seismic Array Experiment

    NASA Astrophysics Data System (ADS)

    Mancinelli, N. J.; Yang, Z.; Yeck, W. L.; Sheehan, A. F.

    2010-12-01

    We analyze background noise to assess the difference in station noise levels of different types of seismic sensors and the effects of deployed site locations, and to identify local noise sources, using the data from the Bighorn Arch Seismic Experiment (BASE). Project BASE is an EarthScope Flexible Array (FA) project and includes the deployment of 38 broadband seismometers (Guralp CMG3T), 173 short-period seismometers (L22 and CMG40T-1s), and 1850 high-frequency geophones with Reftek RT125 “Texans” in northern Wyoming, providing continuous dataset of various seismic sensor types and site locations in different geologic setups (basins and mountains). We carry out our analysis through a recently developed approach of using probability density function (PDF) to display the distribution of seismic power spectral density (PSD) [McNamara and Buland, 2004]. This new approach bypasses the tedious pre-screening for transient signals (earthquakes, mass recentering, calibration pulses, etc.) which is required by the traditional PSD analysis. Using the program PQLX, we were able to correlate specific noise sources—mine blasts, teleseisms, passing cars, etc—with features seen on PDF plots. We analyzed eight months of continuous BASE project broadband and short period data for this study. The power spectral density plots suggest that, of the 3 different instrument types used in the BASE project, the broadband CMG3T stations have the lowest background noise in the period range of 0.1-1 s while the short-period L22 stations have the highest background noise. As expected, stations located in the Bighorn Mountain Range are closer to the Low Noise Model [Peterson, 1993] than those located in the adjacent Bighorn Basin and Powder River Basin, particularly in the 0.1-1 s period range. This is mainly attributed to proximity to bedrock, though increased distance from cultural noise also contributes. At longer periods (1-100 s), the noise level of broadband instruments is lower

  9. Thermal correlation analysis of a long-span suspension bridge static responses

    NASA Astrophysics Data System (ADS)

    Zhou, Linren; Chen, Lan; Xia, Yong; Brownjohn, James M. W.

    2016-04-01

    Harsh service environment degenerates the performance of bridges even leads to catastrophic collapse. Structural temperature has been widely recognized as one of the most negative environmental effects on bridges. The structural responses are deeply affected by the variation and distribution of temperatures on bridges. Therefore, identifying the correlations between them is a significant issue for structural safety assessment. In this study, the relationships between the temperature induced static response and the surrounding weather factors are investigated based on the long-term field measurements of a long-span suspension bridge. The correlations of the meteorological parameters between the bridge filed and the nearby weather station, and the relations of structural static responses to the air temperature, are investigated. The results indicate that relationships of meteorological parameters between nearby weather station and the bridge field can be predicted. The correlation between the static responses and the air temperature and is remarkable with high correlation coefficient. The conclusions are expected to provide reference for the design and evaluation of longspan suspension bridges.

  10. Analysis of the crosstalk in an underwater planar array transducer by the equivalent circuit method

    NASA Astrophysics Data System (ADS)

    Pyo, Seonghun; Roh, Yongrae

    2017-07-01

    A planar array transducer consists of several transducers arranged on an acoustic window, which causes crosstalk. The crosstalk is a phenomenon in which the acoustic pressure generated by a projector is transferred to adjacent hydrophones through the acoustic window and the transferred pressure generates noise signals in the hydrophones. The performance of the planar array transducer is deteriorated due to this acoustic interaction, which should be minimized for maximum array performance. Analysis of the crosstalk has been carried out with sophisticated numerical methods, which motivated the need to develop a simpler and accurate analysis method. In this work, an equivalent circuit has been developed to analyze the crosstalk level of the planar array transducer, and the validity of the developed method has been verified by comparing the result from the equivalent circuit analysis with that from finite element analysis.

  11. Computational Analysis of Static and Dynamic Behaviour of Magnetic Suspensions and Magnetic Bearings

    NASA Technical Reports Server (NTRS)

    Britcher, Colin P. (Editor); Groom, Nelson J.

    1996-01-01

    Static modelling of magnetic bearings is often carried out using magnetic circuit theory. This theory cannot easily include nonlinear effects such as magnetic saturation or the fringing of flux in air-gaps. Modern computational tools are able to accurately model complex magnetic bearing geometries, provided some care is exercised. In magnetic suspension applications, the magnetic fields are highly three-dimensional and require computational tools for the solution of most problems of interest. The dynamics of a magnetic bearing or magnetic suspension system can be strongly affected by eddy currents. Eddy currents are present whenever a time-varying magnetic flux penetrates a conducting medium. The direction of flow of the eddy current is such as to reduce the rate-of-change of flux. Analytic solutions for eddy currents are available for some simplified geometries, but complex geometries must be solved by computation. It is only in recent years that such computations have been considered truly practical. At NASA Langley Research Center, state-of-the-art finite-element computer codes, 'OPERA', 'TOSCA' and 'ELEKTRA' have recently been installed and applied to the magnetostatic and eddy current problems. This paper reviews results of theoretical analyses which suggest general forms of mathematical models for eddy currents, together with computational results. A simplified circuit-based eddy current model proposed appears to predict the observed trends in the case of large eddy current circuits in conducting non-magnetic material. A much more difficult case is seen to be that of eddy currents in magnetic material, or in non-magnetic material at higher frequencies, due to the lower skin depths. Even here, the dissipative behavior has been shown to yield at least somewhat to linear modelling. Magnetostatic and eddy current computations have been carried out relating to the Annular Suspension and Pointing System, a prototype for a space payload pointing and vibration

  12. Improving the Resolution of Bearing in Passive Sonar Arrays by Eigenvalue Analysis.

    DTIC Science & Technology

    1981-11-01

    Passive, Sonar Arrays by Eigenvalue Analysis Technical 6. PERFORMING ORG. REPORT NUMBER I. AUTHOR(e) S. CONTRACT OR GRANT NUMBER(@) Don H. Johnson Stuart...4 .>..-. ,.~. Improving the Resolution of Bearing in Passive Sonar Arrays by Eigenvalue Analysis Don I. Sohnson Stuart DeGraaf , Technical Report EH...methods," Prec. = ICASSP, pp.307-310, Denver. CO (1980). [3] G. Bienvenu and L. Zopp , "Source power estimation method associated with high resolution

  13. ATM solar array in-flight performance analysis

    NASA Technical Reports Server (NTRS)

    Thornton, J. P.; Crabtree, L. W.

    1974-01-01

    The physical and electrical characteristics of the Apollo Telescope Mount (ATM) solar array are described and in-flight performance data are analyzed and compared with predicted results. Two solar cell module configurations were used. Type I module consists of 228 2 x 6 cm solar cells with two cells in parallel and 114 cells in series. Type II modules contain 684 2 x 2 cm cells with six cells in parallel and 114 cells in series. A different interconnection scheme was used for each type. Panels using type II modules with mesh interconnect system performed marginally better than those using type I module with loop interconnect system. The average degradation rate for the ATM array was 8.2% for a 271-day mission.

  14. Analysis and development of dynamic selection of laser array elements

    NASA Technical Reports Server (NTRS)

    Williams, M. D.

    1992-01-01

    The transmission of large amounts of power in space by laser beam (diode lasers, in particular) requires an array of lasers to increase total power. Concentration of the beam requires some degree of coherence. Temporal coherence can be obtained by locking amplifiers to a master oscillator. However, spatial coherence is not so easily created or maintained. Many mechanical, thermal, and electrical factors oppose it continually. A very simple method is described for creating and maintaining a degree of spatial coherence by simply turning selected diodes ON or OFF. The degree of coherence can be chosen; the greater the coherence, the larger is the number of lasers required for a given power and the longer the lifetime of the array. An experiment for analyzing performance, verifying theory, and evaluating critical parameters is also proposed.

  15. Three-dimensional analysis of magnetometer array data

    NASA Technical Reports Server (NTRS)

    Richmond, A. D.; Baumjohann, W.

    1984-01-01

    A technique is developed for mapping magnetic variation fields in three dimensions using data from an array of magnetometers, based on the theory of optimal linear estimation. The technique is applied to data from the Scandinavian Magnetometer Array. Estimates of the spatial power spectra for the internal and external magnetic variations are derived, which in turn provide estimates of the spatial autocorrelation functions of the three magnetic variation components. Statistical errors involved in mapping the external and internal fields are quantified and displayed over the mapping region. Examples of field mapping and of separation into external and internal components are presented. A comparison between the three-dimensional field separation and a two-dimensional separation from a single chain of stations shows that significant differences can arise in the inferred internal component.

  16. Tilted pillar array fabrication by the combination of proton beam writing and soft lithography for microfluidic cell capture Part 2: Image sequence analysis based evaluation and biological application.

    PubMed

    Járvás, Gábor; Varga, Tamás; Szigeti, Márton; Hajba, László; Fürjes, Péter; Rajta, István; Guttman, András

    2017-07-17

    As a continuation of our previously published work, this paper presents a detailed evaluation of a microfabricated cell capture device utilizing a doubly tilted micropillar array. The device was fabricated using a novel hybrid technology based on the combination of proton beam writing and conventional lithography techniques. Tilted pillars offer unique flow characteristics and support enhanced fluidic interaction for improved immunoaffinity based cell capture. The performance of the microdevice was evaluated by an image sequence analysis based in-house developed single-cell tracking system. Individual cell tracking allowed in-depth analysis of the cell-chip surface interaction mechanism from hydrodynamic point of view. Simulation results were validated by using the hybrid device and the optimized surface functionalization procedure. Finally, the cell capture capability of this new generation microdevice was demonstrated by efficiently arresting cells from a HT29 cell-line suspension. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  17. Genetic analysis of presbycusis by arrayed primer extension.

    PubMed

    Rodriguez-Paris, Juan; Ballay, Charles; Inserra, Michelle; Stidham, Katrina; Colen, Tahl; Roberson, Joseph; Gardner, Phyllis; Schrijver, Iris

    2008-01-01

    Using the Hereditary Hearing Loss arrayed primer extension (APEX) array, which contains 198 mutations across 8 hearing loss-associated genes (GJB2, GJB6, GJB3, GJA1, SLC26A4, SLC26A5, 12S-rRNA, and tRNA Ser), we compared the frequency of sequence variants in 94 individuals with early presbycusis to 50 unaffected controls and aimed to identify possible genetic contributors. This cross-sectional study was performed at Stanford University with presbycusis samples from the California Ear Institute. The patients were between ages 20 and 65 yr, with adult-onset sensorineural hearing loss of unknown etiology, and carried a clinical diagnosis of early presbycusis. Exclusion criteria comprised known causes of hearing loss such as significant noise exposure, trauma, ototoxic medication, neoplasm, and congenital infection or syndrome, as well as congenital or pediatric onset. Sequence changes were identified in 11.7% and 10% of presbycusis and control alleles, respectively. Among the presbycusis group, these solely occurred within the GJB2 and SLC26A4 genes. Homozygous and compound heterozygous pathogenic mutations were exclusively seen in affected individuals. We were unable to detect a statistically significant difference between our control and affected populations regarding the frequency of sequence variants detected with the APEX array. Individuals who carry two mild mutations in the GJB2 gene possibly have an increased risk of developing early presbycusis.

  18. Analysis of modified SMI method for adaptive array weight control

    NASA Technical Reports Server (NTRS)

    Dilsavor, R. L.; Moses, R. L.

    1989-01-01

    An adaptive array is applied to the problem of receiving a desired signal in the presence of weak interference signals which need to be suppressed. A modification, suggested by Gupta, of the sample matrix inversion (SMI) algorithm controls the array weights. In the modified SMI algorithm, interference suppression is increased by subtracting a fraction F of the noise power from the diagonal elements of the estimated covariance matrix. Given the true covariance matrix and the desired signal direction, the modified algorithm is shown to maximize a well-defined, intuitive output power ratio criterion. Expressions are derived for the expected value and variance of the array weights and output powers as a function of the fraction F and the number of snapshots used in the covariance matrix estimate. These expressions are compared with computer simulation and good agreement is found. A trade-off is found to exist between the desired level of interference suppression and the number of snapshots required in order to achieve that level with some certainty. The removal of noise eigenvectors from the covariance matrix inverse is also discussed with respect to this application. Finally, the type and severity of errors which occur in the covariance matrix estimate are characterized through simulation.

  19. Performance analysis of structured gradient algorithm. [for adaptive beamforming linear arrays

    NASA Technical Reports Server (NTRS)

    Godara, Lal C.

    1990-01-01

    The structured gradient algorithm uses a structured estimate of the array correlation matrix (ACM) to estimate the gradient required for the constrained least-mean-square (LMS) algorithm. This structure reflects the structure of the exact array correlation matrix for an equispaced linear array and is obtained by spatial averaging of the elements of the noisy correlation matrix. In its standard form the LMS algorithm does not exploit the structure of the array correlation matrix. The gradient is estimated by multiplying the array output with the receiver outputs. An analysis of the two algorithms is presented to show that the covariance of the gradient estimated by the structured method is less sensitive to the look direction signal than that estimated by the standard method. The effect of the number of elements on the signal sensitivity of the two algorithms is studied.

  20. Applications of array processors in the analysis of remote sensing images

    NASA Technical Reports Server (NTRS)

    Ramapriyan, H. K.; Strong, J. P.

    1984-01-01

    The architectures, programming characteristics, and ranges of application of past, present, and planned array processors for the digital processing of remote-sensing images are compared. Such functions as radiometric and geometric corrections, principal-components analysis, cluster coding, histogram generation, grey-level mapping, convolution, classification, and mensuration and modeling operations are considered, and both pipeline-type and single-instruction/multiple-data-stream (SIMD) arrays are evaluated. Numerical results are presented in a table, and it is found that the pipeline-type arrays normally used with minicomputers increase their speed significantly at low cost, while even further gains are provided by the more expensive SIMD arrays. Most image-processing operations become I/O-limited when SIMD arrays are used with current I/O devices.

  1. Crosstalk analysis of silicon-on-insulator nanowire-arrayed waveguide grating

    NASA Astrophysics Data System (ADS)

    Li, Kai-Li; An, Jun-Ming; Zhang, Jia-Shun; Wang, Yue; Wang, Liang-Liang; Li, Jian-Guang; Wu, Yuan-Da; Yin, Xiao-Jie; Hu, Xiong-Wei

    2016-12-01

    The factors influencing the crosstalk of silicon-on-insulator (SOI) nanowire arrayed waveguide grating (AWG) are analyzed using the transfer function method. The analysis shows that wider and thicker arrayed waveguides, outsider fracture of arrayed waveguide, and larger channel space, could mitigate the deterioration of crosstalk. The SOI nanowire AWGs with different arrayed waveguide widths are fabricated by using deep ultraviolet lithography (DUV) and inductively coupled plasma etching (ICP) technology. The measurement results show that the crosstalk performance is improved by about 7 dB through adopting 800 nm arrayed waveguide width. Project supported by the National High Technology Research and Development Program of China (Grant No. 2015AA016902), the National Natural Science Foundation of China (Grant Nos. 61274047, 61435013, 61307034, and 61405188), and the National Key Research and Development Program of China (Grant No. 2016YFB0402504).

  2. A narrow-band analysis of reflected magnitude and phase from six reflector panel arrays

    NASA Astrophysics Data System (ADS)

    Rathsam, Jonathan; Wang, Lily M.; Torres, Rendell R.

    2005-09-01

    This investigation analyzes measurements of the reflected sound field from various reflector panel arrays. A previous study by the third author [R. R. Torres and M. Vorlaender, ``Scale-model MLS-measurements of scattering from overhead panel arrays,'' Acta Acustica (in press)] measured impulse responses using the maximum length sequence method at various receiver positions from six scale-model panel arrays of different sizes and densities. This study included an octave band analysis of reflected magnitude as a function of receiver position. The current authors have extended the research by conducting a narrow-band analysis of magnitude and phase of the reflected sound fields for three of the panel arrays [J. Rathsam, L. M. Wang, and R. R. Torres, J. Acoust. Soc. Am. 117, 2499(A) (2005)]. This study revealed a close relationship between phase and magnitude. The current work continues the analysis of reflected phase and magnitude for the three additional reflector panel arrays. The newer arrays are more complex and may reveal the effects of multiple diffraction more clearly than the previous three arrays.

  3. Exon array data analysis using Affymetrix power tools and R statistical software

    PubMed Central

    2011-01-01

    The use of microarray technology to measure gene expression on a genome-wide scale has been well established for more than a decade. Methods to process and analyse the vast quantity of expression data generated by a typical microarray experiment are similarly well-established. The Affymetrix Exon 1.0 ST array is a relatively new type of array, which has the capability to assess expression at the individual exon level. This allows a more comprehensive analysis of the transcriptome, and in particular enables the study of alternative splicing, a gene regulation mechanism important in both normal conditions and in diseases. Some aspects of exon array data analysis are shared with those for standard gene expression data but others present new challenges that have required development of novel tools. Here, I will introduce the exon array and present a detailed example tutorial for analysis of data generated using this platform. PMID:21498550

  4. Exon array data analysis using Affymetrix power tools and R statistical software.

    PubMed

    Lockstone, Helen E

    2011-11-01

    The use of microarray technology to measure gene expression on a genome-wide scale has been well established for more than a decade. Methods to process and analyse the vast quantity of expression data generated by a typical microarray experiment are similarly well-established. The Affymetrix Exon 1.0 ST array is a relatively new type of array, which has the capability to assess expression at the individual exon level. This allows a more comprehensive analysis of the transcriptome, and in particular enables the study of alternative splicing, a gene regulation mechanism important in both normal conditions and in diseases. Some aspects of exon array data analysis are shared with those for standard gene expression data but others present new challenges that have required development of novel tools. Here, I will introduce the exon array and present a detailed example tutorial for analysis of data generated using this platform.

  5. Balanced into array: genome-wide array analysis in 54 patients with an apparently balanced de novo chromosome rearrangement and a meta-analysis

    PubMed Central

    Feenstra, Ilse; Hanemaaijer, Nicolien; Sikkema-Raddatz, Birgit; Yntema, Helger; Dijkhuizen, Trijnie; Lugtenberg, Dorien; Verheij, Joke; Green, Andrew; Hordijk, Roel; Reardon, William; Vries, Bert de; Brunner, Han; Bongers, Ernie; Leeuw, Nicole de; van Ravenswaaij-Arts, Conny

    2011-01-01

    High-resolution genome-wide array analysis enables detailed screening for cryptic and submicroscopic imbalances of microscopically balanced de novo rearrangements in patients with developmental delay and/or congenital abnormalities. In this report, we added the results of genome-wide array analysis in 54 patients to data on 117 patients from seven other studies. A chromosome imbalance was detected in 37% of all patients with two-breakpoint rearrangements. In 49% of these patients, the imbalances were located in one or both breakpoint regions. Imbalances were more frequently (90%) found in complex rearrangements, with the majority (81%) having deletions in the breakpoint regions. The size of our own cohort enabled us to relate the presence of an imbalance to the clinical features of the patients by using a scoring system, the De Vries criteria, that indicates the complexity of the phenotype. The median De Vries score was significantly higher (P=0.002) in those patients with an imbalance (5, range 1–9) than in patients with a normal array result (3, range 0–7). This study provides accurate percentages of cryptic imbalances that can be detected by genome-wide array analysis in simple and complex de novo microscopically balanced chromosome rearrangements and confirms that these imbalances are more likely to occur in patients with a complex phenotype. PMID:21712853

  6. Oligonucleotide Arrays vs. Metaphase-Comparative Genomic Hybridisation and BAC Arrays for Single-Cell Analysis: First Applications to Preimplantation Genetic Diagnosis for Robertsonian Translocation Carriers

    PubMed Central

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers. PMID:25415307

  7. Oligonucleotide arrays vs. metaphase-comparative genomic hybridisation and BAC arrays for single-cell analysis: first applications to preimplantation genetic diagnosis for Robertsonian translocation carriers.

    PubMed

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈ 20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers.

  8. Analysis of Image Formation with Thinned Random Arrays

    DTIC Science & Technology

    1979-06-01

    FORCE OFFICE OF SCIENTIFIC RESEARCH Building 410 i Boiling Air Force Base , Washington, DC 20332 A ~VA Approved for public rolo~ae; UT G’ -7 7 . . . . 7...However, there is no general theory available for the algorithmic design of this class of arrays. Many of the designs to date have been based on trial- and...system. The system impulse function is directly related 14 to the pupil function by a Fourier trmnsformation: h(x,y) ff P(•,) 6 -i2T(xc+Y8) dadO . (3

  9. Economic analysis of the unified heliostat array. Final report

    SciTech Connect

    Not Available

    1981-01-31

    The Unified Heliostat Array (UHA) was investigated as to cost and optical performance. Two heliostats, the Veda Industrial Heliostat (VIH) and the Repowering Heliostat were investigated in conjunction with the UHA. The UHA was found to be a viable candidate for solar thermal central receiver applications. The UHA-VIH combination was shown to provide very high flux densities and to be suitable for high temperature applications in the 1000/sup 0/K to 2000/sup 0/K range. These temperatures were shown to be achievable even with very small (1 MWt) collector fields.

  10. A preliminary analysis of a diode array for densitometry

    NASA Astrophysics Data System (ADS)

    Janes, K. A.

    1984-07-01

    A diode-array based image digitizer manufactured by the Eikonix Corp. was tested to see if it can be adapted to the exacting requirements of astronomical densitometry. As the device is presently configured, a dynamic range of 400:1 can be achieved routinely, with a positional accuracy of 2 microns or better. An area of 2048 X 2048 pixels can be scanned in about 5 minutes. Preliminary tests indicate that several relatively simple enhancements can improve both the photometric and the positional accuracy of the device.

  11. FEM/BEM analysis of a generalized periodic array.

    PubMed

    Ventura, Pascal; Steichen, William

    2007-10-01

    Recent developments in wide bandwidth SAW filter design led to the use of complex electroacoustic cells, such as the Hanma-Hunsinger cell. For this kind of structure, it is not sufficient to use only a single electrode periodic FEM/BEM model to derive the P-matrix parameters. The present paper proposes a mixed FEM/BEM numerical model for the simulation of a periodic array of metallic electrodes, the elementary cell of which can be as complex as necessary: it can contain several electrodes, connected to active ports, or short-circuited, or floating.

  12. Analysis and modeling for thermal focal plane arrays

    NASA Astrophysics Data System (ADS)

    Tuer, T. W.; Ball, B. W.; Freeling, J. R.; Lennington, J. W.; Lindquist, G. H.

    1984-07-01

    The development of a first principles computer simulation of a generic pyroelectric thermal detector is described. Formulation of the pertinent equations (based on a thorough literature survey) is presented. This simulation incorporates a finite difference treatment of the transient three-dimensional thermal response of composite focal plane arrays, with treatments of the signal generation, readout and processing including all pertinent noise sources. A number of simplified problems having analytical solutions were treated to validate various portions of the simulation to within a few percent. Performance estimates were made for conceptual several configurations and materials.

  13. Software and methods for oligonucleotide and cDNA array data analysis

    PubMed Central

    Zapala, Matthew A; Lockhart, Daniel J; Pankratz, Daniel G; Garcia, Anthony J; Barlow, Carrolee; Lockhart, David J

    2002-01-01

    Two HTML-based programs were developed to analyze and filter gene-expression data: 'Bullfrog' for Affymetrix oligonucleotide arrays and 'Spot' for custom cDNA arrays. The programs provide intuitive data-filtering tools through an easy-to-use interface. A background subtraction and normalization program for cDNA arrays was also built that provides an informative summary report with data-quality assessments. These programs are freeware to aid in the analysis of gene-expression results and facilitate the search for genes responsible for interesting biological processes and phenotypes. PMID:12093384

  14. Analysis of Active Phased Antenna Array Parameters for the Gurt Radio Telescope

    NASA Astrophysics Data System (ADS)

    Tokarsky, P. L.; Konovalenko, A. A.; Yerin, S. N.

    2015-06-01

    The calculation technique results of numerical analysis of parameters of active phased antenna array (APAA) of the Giant Ukrainian Radio Telescope (GURT) of decameter and meter wavelengths which is being built now nearby Kharkiv at the area of S. Ya. Braude Radio Astronomy Observatory of the Institute of Radio Astronomy of the National Academy of Sciences of Ukraine are presented. The technique is based on the matrix theory of antenna arrays which combines an electromagnetic approach to analysis of radiators array with the methods of microwave multiport theory for the APAA feed network description. The results of numerical calculation of the APAA effective area and its gain, which in case of passive array is associated with its efficiency, are given and analyzed for a wide scan range within 10 to 80 MHz.

  15. Panax ginseng Adventitious Root Suspension Culture: Protocol for Biomass Production and Analysis of Ginsenosides by High Pressure Liquid Chromatography.

    PubMed

    Murthy, Hosakatte Niranjana; Paek, Kee Yoeup

    2016-01-01

    Panax ginseng C.A. Meyer (Korean ginseng) is a popular herbal medicine. It has been used in Chinese and Oriental medicines since thousands of years. Ginseng products are generally used as a tonic and an adaptogen to resist the adverse influence of a wide range of physical, chemical and biological factors, and to restore homeostasis. Ginsenosides or ginseng saponins are the principal active ingredients of ginseng. Since ginseng cultivation process is very slow and needs specific environment for field cultivation, cell and tissue cultures are sought as alternatives for the production of ginseng biomass and bioactive compounds. In this chapter, we focus on methods of induction of adventitious roots from ginseng roots, establishment of adventitious root suspension cultures using bioreactors, procedures for processing of adventitious roots, and analysis of ginsenosides by high pressure liquid chromatography.

  16. Quartz crystal microbalance (QCM) arrays for solution analysis

    SciTech Connect

    Schneider, T.W.; Frye, G.C.; Martin, S.J.; Kottenstette, R.J.; Osbourn, G.C.; Bartholomew, J.W.; Weisenbach, L.; Bohuszewicz, T.V.; Doughty, D.H.

    1997-01-01

    Quartz crystal microbalances (QCMs) are piezoelectric thickness-shear-mode resonators where the resonant frequency has long been known to vary linearly with the mass of rigid layers on the surface when the device is in contact with air. This reports summarizes the results from a Laboratory Directed Research and Development effort to use an array of QCMs to measure and identify volatile organic compounds (VOCs) in water solutions. A total of nine polymer-coated QCMs were tested with varying concentrations of twelve VOCs while frequency and damping voltage were measured. Results from these experiments were analyzed using a Sandia-developed pattern recognition technique called visually empirical region of influence (VERI) developed at Sandia. The VERI analyses of data with up to 16% and 50% sensitivity drifts were carried out on an array with six signals obtained from five sensors. The results indicate that better than 98% and 88% correct chemical recognition is maintained for the 16% and 50% drifts, respectively. These results indicate a good degree of robustness for these sensor films.

  17. Correlator data analysis for the array feed compensation system

    NASA Astrophysics Data System (ADS)

    Iijima, B.; Fort, D.; Vilnrotter, V.

    1994-05-01

    The real-time array feed compensation system is currently being evaluated at DSS 13. This system recovers signal-to-noise ratio (SNR) loss due to mechanical antenna deformations by using an array of seven Ka-band (33.7-GHz) horns to collect the defocused signal fields. The received signals are downconverted and digitized, in-phase and quadrature samples are generated, and combining weights are applied before the samples are recombined. It is shown that when optimum combining weights are employed, the SNR of the combined signal approaches the sum of the channel SNR's. The optimum combining weights are estimated directly from the signals in each channel by the Real-Time Block 2 (RTB2) correlator; since it was designed for very-long-baseline interferometer (VLBI) applications, it can process broadband signals as well as tones to extract the required weight estimates. The estimation algorithms for the optimum combining weights are described for tones and broadband sources. Data recorded in correlator output files can also be used off-line to estimate combiner performance by estimating the SNR in each channel, which was done for data taken during a Jupiter track at DSS 13.

  18. Correlator Data Analysis for the Array Feed Compensation System

    NASA Astrophysics Data System (ADS)

    Iijima, B.; Fort, D.; Vilnrotter, V.

    1994-01-01

    The real-time array feed compensation system is currently being evaluated at DSS 13. This system recovers signal-to-noise ratio (SNR) loss due to mechanical antenna deformations by using an array of seven Ka-band (33.7-GHz) horns to collect the defocused signal fields. The received signals are downconverted and digitized, in-phase and quadrature samples are generated, and combining weights are applied before the samples are recombined. It is shown that when optimum combining weights are employed, the SNR of the combined signal approaches the sum of the channel SNRs. The optimum combining weights are estimated directly from the signals in each channel by the Real-Time Block II (RTB2) correlator; since it was designed for very-long-baseline interferometer (VLBI) applications, it can process broadband signals as well as tones to extract the required weight estimates. The estimation algorithms for the optimum combining weights are described for tones and broadband sources. Data recorded in correlator output files can also be used off-line to estimate combiner performance by estimating the SNR in each channel, which was done for data taken during a Jupiter track at DSS 13.

  19. Correlator data analysis for the array feed compensation system

    NASA Technical Reports Server (NTRS)

    Iijima, B.; Fort, D.; Vilnrotter, V.

    1994-01-01

    The real-time array feed compensation system is currently being evaluated at DSS 13. This system recovers signal-to-noise ratio (SNR) loss due to mechanical antenna deformations by using an array of seven Ka-band (33.7-GHz) horns to collect the defocused signal fields. The received signals are downconverted and digitized, in-phase and quadrature samples are generated, and combining weights are applied before the samples are recombined. It is shown that when optimum combining weights are employed, the SNR of the combined signal approaches the sum of the channel SNR's. The optimum combining weights are estimated directly from the signals in each channel by the Real-Time Block 2 (RTB2) correlator; since it was designed for very-long-baseline interferometer (VLBI) applications, it can process broadband signals as well as tones to extract the required weight estimates. The estimation algorithms for the optimum combining weights are described for tones and broadband sources. Data recorded in correlator output files can also be used off-line to estimate combiner performance by estimating the SNR in each channel, which was done for data taken during a Jupiter track at DSS 13.

  20. Error analysis of subaperture processing in 1-D ultrasound arrays.

    PubMed

    Zhao, Kang-Qiao; Bjåstad, Tore Gruner; Kristoffersen, Kjell

    2015-04-01

    To simplify the medical ultrasound system and reduce the cost, several techniques have been proposed to reduce the interconnections between the ultrasound probe and the back-end console. Among them, subaperture processing (SAP) is the most straightforward approach and is widely used in commercial products. This paper reviews the most important error sources of SAP, such as static focusing, delay quantization, linear delay profile, and coarse apodization, and the impacts introduced by these errors are shown. We propose to use main lobe coherence loss as a simple classification of the quality of the beam profile for a given design. This figure-ofmerit (FoM) is evaluated by simulations with a 1-D ultrasound subaperture array setup. The analytical expressions and the coherence loss can work as a quick guideline in subaperture design by equalizing the merit degradations from different error sources, as well as minimizing the average or maximum loss over ranges. For the evaluated 1-D array example, a good balance between errors and cost was achieved using a subaperture size of 5 elements, focus at 40 mm range, and a delay quantization step corresponding to a phase of π/4.

  1. Performance Analysis of a Cost-Effective Electret Condenser Microphone Directional Array

    NASA Technical Reports Server (NTRS)

    Humphreys, William M., Jr.; Gerhold, Carl H.; Zuckerwar, Allan J.; Herring, Gregory C.; Bartram, Scott M.

    2003-01-01

    Microphone directional array technology continues to be a critical part of the overall instrumentation suite for experimental aeroacoustics. Unfortunately, high sensor cost remains one of the limiting factors in the construction of very high-density arrays (i.e., arrays containing several hundred channels or more) which could be used to implement advanced beamforming algorithms. In an effort to reduce the implementation cost of such arrays, the authors have undertaken a systematic performance analysis of a prototype 35-microphone array populated with commercial electret condenser microphones. An ensemble of microphones coupling commercially available electret cartridges with passive signal conditioning circuitry was fabricated for use with the Langley Large Aperture Directional Array (LADA). A performance analysis consisting of three phases was then performed: (1) characterize the acoustic response of the microphones via laboratory testing and calibration, (2) evaluate the beamforming capability of the electret-based LADA using a series of independently controlled point sources in an anechoic environment, and (3) demonstrate the utility of an electret-based directional array in a real-world application, in this case a cold flow jet operating at high subsonic velocities. The results of the investigation revealed a microphone frequency response suitable for directional array use over a range of 250 Hz - 40 kHz, a successful beamforming evaluation using the electret-populated LADA to measure simple point sources at frequencies up to 20 kHz, and a successful demonstration using the array to measure noise generated by the cold flow jet. This paper presents an overview of the tests conducted along with sample data obtained from those tests.

  2. Array analysis of regional Pn and Pg wavefields from the Nevada Test Site

    SciTech Connect

    Leonard, M.A. . Dept. of Geology and Geophysics Lawrence Berkeley Lab., CA )

    1991-06-01

    Small-aperture high-frequency seismic arrays with dimensions of a few kilometers or less, can improve our ability to seismically monitor compliance with a low-yield Threshold Test Ban Treaty. This work studies the characteristics and effectiveness of array processing of the regional Pn and Pg wavefields generated by underground nuclear explosions at the Nevada Test Site. Waveform data from the explosion HARDIN (m{sub b} = 5.5) is recorded at a temporary 12-element, 3-component, 1.5 km-aperture array sited in an area of northern Nevada. The explosions VILLE (m{sub b} = 4.4) and SALUT (m{sub b} = 5.5) are recorded at two arrays sited in the Mojave desert, one a 96-element vertical-component 7 km-aperture array and the other a 155-element vertical-component 4 km-aperture array. Among the mean spectra for the m{sub b} = 5.5 events there are significant differences in low-frequency spectral amplitudes between array sites. The spectra become nearly identical beyond about 6 Hz. Spectral ratios are used to examine seismic source properties and the partitioning of energy between Pn and Pg. Frequency-wavenumber analysis at the 12-element array is used to obtain estimates of signal gain, phase velocity, and source azimuth. This analysis reveals frequency-dependent biases in velocity and azimuth of the coherent Pn and Pg arrivals. Signal correlation, the principal factor governing array performance, is examined in terms of spatial coherence estimates. The coherence is found to vary between the three sites. In all cases the coherence of Pn is greater than that for Pg. 81 refs., 92 figs., 5 tabs.

  3. Tissue matrix arrays for high throughput screening and systems analysis of cell function

    PubMed Central

    Beachley, Vince Z.; Wolf, Matthew T.; Sadtler, Kaitlyn; Manda, Srikanth S.; Jacobs, Heather; Blatchley, Michael; Bader, Joel S.; Pandey, Akhilesh; Pardoll, Drew; Elisseeff, Jennifer H.

    2015-01-01

    Cell and protein arrays have demonstrated remarkable utility in the high-throughput evaluation of biological responses; however, they lack the complexity of native tissue and organs. Here, we describe tissue extracellular matrix (ECM) arrays for screening biological outputs and systems analysis. We spotted processed tissue ECM particles as two-dimensional arrays or incorporated them with cells to generate three-dimensional cell-matrix microtissue arrays. We then investigated the response of human stem, cancer, and immune cells to tissue ECM arrays originating from 11 different tissues, and validated the 2D and 3D arrays as representative of the in vivo microenvironment through quantitative analysis of tissue-specific cellular responses, including matrix production, adhesion and proliferation, and morphological changes following culture. The biological outputs correlated with tissue proteomics, and network analysis identified several proteins linked to cell function. Our methodology enables broad screening of ECMs to connect tissue-specific composition with biological activity, providing a new resource for biomaterials research and translation. PMID:26480475

  4. The analysis of antioxidant expression during muscle atrophy induced by hindlimb suspension in mice.

    PubMed

    Nuoc, Tran-Non; Kim, Suhee; Ahn, Sun Hee; Lee, Jin-Sil; Park, Byung-Ju; Lee, Tae-Hoon

    2017-01-01

    Oxidative stress contributes to acceleration of muscle atrophy. However, it is still not completely understood what triggers the production of reactive oxygen species (ROS) during muscle atrophy. The objective of this study was to investigate redox balance during muscle atrophy. ROS generators and antioxidants were analyzed in atrophied soleus muscles after 2 weeks of hindlimb suspension (HLS) in mice. The HLS group showed an increase in lipid peroxidation, upregulated NOX1 and NOXO1, and downregulated mitochondrial complex I subunits NDUFS5 and NDUFV2. Additionally, HLS mice demonstrated a decrease in Prdx5 and MnSOD, but an increase in GPX2 and GPX3 in both mRNA and protein levels. As expected, MnSOD activity declined in the HLS group, while GPX activity was enhanced. These results suggest that redox imbalance occurs during muscle atrophy through NOX1 activation, mitochondrial complex I deficiency, and disturbance of antioxidants. Antioxidants altered by HLS may represent potential therapeutic targets for the protection against muscle atrophy.

  5. Inverse problem analysis of pluripotent stem cell aggregation dynamics in stirred-suspension cultures

    PubMed Central

    Rostami, Mahboubeh Rahmati; Wu, Jincheng; Tzanakakis, Emmanuel S.

    2015-01-01

    The cultivation of stem cells as aggregates in scalable bioreactor cultures is an appealing modality for the large-scale manufacturing of stem cell products. Aggregation phenomena are central to such bioprocesses affecting the viability, proliferation and differentiation trajectory of stem cells but a quantitative framework is currently lacking. A population balance equation (PBE) model was used to describe the temporal evolution of the embryonic stem cell (ESC) cluster size distribution by considering collision-induced aggregation and cell proliferation in a stirred-suspension vessel. For ESC cultures at different agitation rates, the aggregation kernel representing the aggregation dynamics was successfully recovered as a solution of the inverse problem. The rate of change of the average aggregate size was greater at the intermediate rate tested suggesting a trade-off between increased collisions and agitation-induced shear. Results from forward simulation with obtained aggregation kernels were in agreement with transient aggregate size data from experiments. We conclude that the framework presented here can complement mechanistic studies offering insights into relevant stem cell clustering processes. More importantly from a process development standpoint, this strategy can be employed in the design and control of bioreactors for the generation of stem cell derivatives for drug screening, tissue engineering and regenerative medicine. PMID:26036699

  6. Experimental and numerical analysis of clamped joints in front motorbike suspensions

    NASA Astrophysics Data System (ADS)

    Croccolo, D.; de Agostinis, M.; Vincenzi, N.

    2010-06-01

    Clamped joints are shaft-hub connections used, as an instance, in front motorbike suspensions to lock the steering plates with the legs and the legs with the wheel pin, by means of one or two bolts. The preloading force, produced during the tightening process, should be evaluated accurately, since it must lock safely the shaft, without overcoming the yielding point of the hub. Firstly, friction coefficients have been evaluated on “ad-hoc designed” specimens, by applying the Design of Experiment approach: the applied tightening torque has been precisely related to the imposed preloading force. Then, the tensile state of clamps have been evaluated both via FEM and by leveraging some design formulae proposed by the Authors as function of the preloading force and of the clamp geometry. Finally, the results have been compared to those given by some strain gauges applied on the tested clamps: the discrepancies between numerical analyses, the design formulae and the experimental results remains under a threshold of 10%.

  7. Modeling and analysis of a negative stiffness magnetic suspension vibration isolator with experimental investigations.

    PubMed

    Zhu, Yu; Li, Qiang; Xu, Dengfeng; Hu, Chuxiong; Zhang, Ming

    2012-09-01

    This paper presents a negative stiffness magnetic suspension vibration isolator (NSMSVI) using magnetic spring and rubber ligaments. The positive stiffness is obtained by repulsive magnetic spring while the negative stiffness is gained by rubber ligaments. In order to study the vibration isolation performance of the NSMSVI, an analytical expression of the vertical stretch force of the rubber ligament is constructed. Experiments are carried out, which demonstrates that the analytical expression is effective. Then an analytical expression of the vertical stiffness of the rubber ligament is deduced by the derivative of the stretch force of the rubber ligament with respect to the displacement of the inner magnetic ring. Furthermore, the parametric study of the magnetic spring and rubber ligament are carried out. As a case study, the size dimensions of the magnetic spring and rubber ligament are determined. Finally, an NSMSVI table was built to verify the vibration isolation performance of the NSMSVI. The transmissibility curves of the NSMSVI are subsequently calculated and tested by instruments. The experimental results reveal that there is a good consistency between the measured transmissibility and the calculated ones, which proves that the proposed NSMSVI is effective and can realize low-frequency vibration isolation.

  8. Design, optimization, and analysis of a self-deploying PV tent array

    NASA Technical Reports Server (NTRS)

    Collozza, Anthony J.

    1991-01-01

    A tent shaped PV array was designed and the design was optimized for maximum specific power. In order to minimize output power variation a tent angle of 60 deg was chosen. Based on the chosen tent angle an array structure was designed. The design considerations were minimal deployment time, high reliability, and small stowage volume. To meet these considerations the array was chosen to be self-deployable, form a compact storage configuration, using a passive pressurized gas deployment mechanism. Each structural component of the design was analyzed to determine the size necessary to withstand the various forces to which it would be subjected. Through this analysis the component weights were determined. An optimization was performed to determine the array dimensions and blanket geometry which produce the maximum specific power for a given PV blanket. This optimization was performed for both lunar and Martian environmental conditions. Other factors such as PV blanket types, structural material, and wind velocity (for Mars array), were varied to determine what influence they had on the design point. The performance specifications for the array at both locations and with each type of PV blanket were determined. These specifications were calculated using the Arimid fiber composite as the structural material. The four PV blanket types considered were silicon, GaAs/Ge, GaAsCLEFT, and amorphous silicon. The specifications used for each blanket represented either present day or near term technology. For both the Moon and Mars the amorphous silicon arrays produced the highest specific power.

  9. Label free analysis of transcription factors using microcantilever arrays.

    PubMed

    Huber, François; Hegner, Martin; Gerber, Christoph; Güntherodt, Hans-Joachim; Lang, Hans Peter

    2006-02-15

    We report the measurement of protein interaction with double-stranded DNA oligonucleotides using cantilever microarray technology. We investigated two different DNA-binding proteins, the transcription factors SP1 and NF-kappaB, using cantilever arrays as they allow label-free measurement of different biomolecular interactions in parallel. Double-stranded DNA oligonucleotides containing a specific binding site for a transcription factor were sensitized on gold-coated cantilevers. The binding of the transcription factor creates a surface stress, resulting in a bending of the cantilevers. Both transcription factors could be detected independently at concentrations of 80-100 nM. A concentration dependence of the bending signal was measured using concentrations from 100 to 400 nM of NF-kappaB. The experiments show that the recognition sequence of one transcription factor can serve as a reference for the other, highlighting the sequence specificity of transcription factor binding.

  10. Analysis of the ICE combiner for multiple antenna arraying

    NASA Technical Reports Server (NTRS)

    Foster, C.; Marina, M.

    1987-01-01

    The passage of the International Cometary Explorer (ICE) through the tail of comet Giacobini-Zinner took place on September 11, 1985, at approximately 11:04 GMT. The signal-to-noise ratio of the data received from the ICE spacecraft during the comet encounter was improved by arraying the 64-m antenna channels A and B (RCP and LCP) with the two 34-m antennas. Specially designed combiners were built to combine the signals received by the three antennas at the different DSN sites to ensure that the spacecraft's weak signal was received. Although the ICE spacecraft was built with a 5-W transmitter and with a small antenna designed to provide data from no farther than 1 million miles, these combiners provided enough signal margin during the encounter to receive the ICE transmitted data from within the tail of comet Giacobini-Zinner, 44 million miles from earth.

  11. Design and analysis of subwavelength plasmonic waveguide array

    NASA Astrophysics Data System (ADS)

    Dillu, Venus; Singh, Shruti; Sinha, Ravindra K.

    2011-10-01

    We examine the propagation of plasmonic TM (Transverse Modes) modes generated in the designed periodic array of silver (Ag) embedded on silicon (Si) substrate. The properties of surface plasmons are tailored by altering the size of Ag nanorods and its periodicity. Conventional waveguides cannot guide electromagnetic energy below the diffraction limit of light, which can be overcome by texturing the metal or dielectric surface. In this hybrid design we have textured the interface by placing metallic, Ag nanorods on Si substrate placed over bilayer system of glasses. This provides the missing momentum required, since SPP modes always lay beyond the light line and has shown strong confinement of light. Ag nanorods are structured at nano dimensions to control and manipulate surface plasmon polariton (SPP) propagation and thus open new possibilities in light matter interaction.

  12. Theoretical analysis of optical conveyor belt with plasmonic nanodisk array

    NASA Astrophysics Data System (ADS)

    Lee, Changhun; Kim, Donghyun

    2017-07-01

    Plasmonic optical trapping allows trapping and manipulation of micro- and even nanometer-sized particles using localized and enhanced electric fields by plasmon resonance in metallic nanostructure. We consider an optical conveyor belt consisting of an array of nanodisks acting as optical tweezers with different sizes to implement a system to trap and manipulate particles through a laser-induced gradient force. An electric field induced and localized at each optical resonator is sensitive to the wavelength and polarization. The maximum electric field is enhanced at resonant wavelength depending on the shape and size of the plasmonic nanostructure used for light localization. By changing the light wavelength and polarization, the position of localized light induced in the disk can be determined and nanoparticles can be moved to a desired location through the variation of resonance conditions without any mechanical forces.

  13. Mir Cooperative Solar Array Flight Performance Data and Computational Analysis

    NASA Technical Reports Server (NTRS)

    Kerslake, Thomas W.; Hoffman, David J.

    1997-01-01

    The Mir Cooperative Solar Array (MCSA) was developed jointly by the United States (US) and Russia to provide approximately 6 kW of photovoltaic power to the Russian space station Mir. The MCSA was launched to Mir in November 1995 and installed on the Kvant-1 module in May 1996. Since the MCSA photovoltaic panel modules (PPMs) are nearly identical to those of the International Space Station (ISS) photovoltaic arrays, MCSA operation offered an opportunity to gather multi-year performance data on this technology prior to its implementation on ISS. Two specially designed test sequences were executed in June and December 1996 to measure MCSA performance. Each test period encompassed 3 orbital revolutions whereby the current produced by the MCSA channels was measured. The temperature of MCSA PPMs was also measured. To better interpret the MCSA flight data, a dedicated FORTRAN computer code was developed to predict the detailed thermal-electrical performance of the MCSA. Flight data compared very favorably with computational performance predictions. This indicated that the MCSA electrical performance was fully meeting pre-flight expectations. There were no measurable indications of unexpected or precipitous MCSA performance degradation due to contamination or other causes after 7 months of operation on orbit. Power delivered to the Mir bus was lower than desired as a consequence of the retrofitted power distribution cabling. The strong correlation of experimental and computational results further bolsters the confidence level of performance codes used in critical ISS electric power forecasting. In this paper, MCSA flight performance tests are described as well as the computational modeling behind the performance predictions.

  14. Mir Cooperative Solar Array flight performance data and computational analysis

    SciTech Connect

    Kerslake, T.W.; Hoffman, D.J.

    1997-12-31

    The Mir Cooperative Solar Array (MCSA) was developed jointly by the United States (US) and Russia to provide approximately 6 kW of photovoltaic power to the Russian space station Mir. The MCSA was launched to Mir in November 1995 and installed on the Kvant-1 module in May 1996. Since the MCSA photovoltaic panel modules (PPMs) are nearly identical to those of the International Space Station (ISS) photovoltaic arrays, MCSA operation offered an opportunity to gather multi-year performance data on this technology prior to its implementation on ISS. Two specially designed test sequences were executed in June and December 1996 to measure MCSA performance. Each test period encompassed 3 orbital revolutions whereby the current produced by the MCSA channels was measured. The temperature of MCSA PPMs was also measured. To better interpret the MCSA flight data, a dedicated FORTRAN computer code was developed to predict the detailed thermal-electrical performance of the MCSA. Flight data compared very favorably with computational performance predictions. This indicated that the MCSA electrical performance was fully meeting pre-flight expectations. There were no measurable indications of unexpected or precipitous MCSA performance degradation due to contamination or other causes after 7 months of operation on orbit. Power delivered to the Mir bus was lower than desired as a consequence of the retrofitted power distribution cabling. The strong correlation of experimental and computational results further bolsters the confidence level of performance codes used in critical ISS electric power forecasting. In this paper, MCSA flight performance tests are described as well as the computational modeling behind the performance predictions.

  15. Theory and design of compact hybrid microphone arrays on two-dimensional planes for three-dimensional soundfield analysis.

    PubMed

    Chen, Hanchi; Abhayapala, Thushara D; Zhang, Wen

    2015-11-01

    Soundfield analysis based on spherical harmonic decomposition has been widely used in various applications; however, a drawback is the three-dimensional geometry of the microphone arrays. In this paper, a method to design two-dimensional planar microphone arrays that are capable of capturing three-dimensional (3D) spatial soundfields is proposed. Through the utilization of both omni-directional and first order microphones, the proposed microphone array is capable of measuring soundfield components that are undetectable to conventional planar omni-directional microphone arrays, thus providing the same functionality as 3D arrays designed for the same purpose. Simulations show that the accuracy of the planar microphone array is comparable to traditional spherical microphone arrays. Due to its compact shape, the proposed microphone array greatly increases the feasibility of 3D soundfield analysis techniques in real-world applications.

  16. Ion Trap Array-Based Systems And Methods For Chemical Analysis

    DOEpatents

    Whitten, William B [Oak Ridge, TN; Ramsey, J Michael [Knoxville, TN

    2005-08-23

    An ion trap-based system for chemical analysis includes an ion trap array. The ion trap array includes a plurality of ion traps arranged in a 2-dimensional array for initially confining ions. Each of the ion traps comprise a central electrode having an aperture, a first and second insulator each having an aperture sandwiching the central electrode, and first and second end cap electrodes each having an aperture sandwiching the first and second insulator. A structure for simultaneously directing a plurality of different species of ions out from the ion traps is provided. A spectrometer including a detector receives and identifies the ions. The trap array can be used with spectrometers including time-of-flight mass spectrometers and ion mobility spectrometers.

  17. A cross-reactive sensor array for the fluorescence qualitative analysis of heavy metal ions.

    PubMed

    Kang, Huaizhi; Lin, Liping; Rong, Mingcong; Chen, Xi

    2014-11-01

    A cross-reactive sensor array using mercaptopropionic acid modified cadmium telluride (CdTe), glutathione modified CdTe, poly(methacrylic acid) modified silver nanoclusters, bovine serum albumin modified gold nanoclusters, rhodamine derivative and calcein blue as fluorescent indicators has been designed for the detection of seven heavy metal ions (Ag(+), Hg(2+), Pb(2+), Cu(2+), Cr(3+), Mn(2+) and Cd(2+)). The discriminatory capacity of the sensor array to different heavy metal ions in different pH solutions has been tested and the results have been analyzed with linear discriminant analysis. Results showed that the sensor array could be used to qualitatively analyze the selected heavy metal ions. The array performance was also evaluated in the identification of known and unknown samples and the preliminary results suggested the promising practicability of the designed sensor assay.

  18. Objective performance analysis of spherical microphone arrays for speech enhancement in rooms.

    PubMed

    Peled, Yotam; Rafaely, Boaz

    2012-09-01

    Reverberation and noise have a significant effect on the intelligibility of speech in rooms. The detection of clear speech in highly reverberant and noisy enclosures is an extremely difficult task. Recently, spherical microphone arrays have been studied for processing of sound fields in three-dimensions, with applications ranging from acoustic analysis to speech enhancement. This paper presents the derivation of a model that facilitates the prediction of spherical array configurations that guarantee an acceptable level of speech intelligibility in reverberant and noisy environments. A spherical microphone array is employed to generate a spatial filter that maximizes speech intelligibility according to an objective measure that combines the effects of both reverberation and noise. The spherical array beamformer is designed to enhance the speech signal while minimizing noise power and maintaining robustness over a wide frequency range. The paper includes simulation and experimental studies with a comparison to speech transmission index based analysis to provide initial validation of the model. Examples are presented in which the minimum number of microphones in a spherical array can be determined from environment conditions such as reverberation time, noise level, and distance of the array to the speech source.

  19. Stochastic segmentation models for array-based comparative genomic hybridization data analysis.

    PubMed

    Lai, Tze Leung; Xing, Haipeng; Zhang, Nancy

    2008-04-01

    Array-based comparative genomic hybridization (array-CGH) is a high throughput, high resolution technique for studying the genetics of cancer. Analysis of array-CGH data typically involves estimation of the underlying chromosome copy numbers from the log fluorescence ratios and segmenting the chromosome into regions with the same copy number at each location. We propose for the analysis of array-CGH data, a new stochastic segmentation model and an associated estimation procedure that has attractive statistical and computational properties. An important benefit of this Bayesian segmentation model is that it yields explicit formulas for posterior means, which can be used to estimate the signal directly without performing segmentation. Other quantities relating to the posterior distribution that are useful for providing confidence assessments of any given segmentation can also be estimated by using our method. We propose an approximation method whose computation time is linear in sequence length which makes our method practically applicable to the new higher density arrays. Simulation studies and applications to real array-CGH data illustrate the advantages of the proposed approach.

  20. Analysis of costs of gallium arsenide and silicon solar arrays for space power applications

    NASA Technical Reports Server (NTRS)

    Jefferies, K. S.

    1981-01-01

    A parametric analysis was performed to compare the costs of silicon and gallium arsenide arrays for Earth orbital missions. The missions included electric power in low Earth orbit (LEO), electric power in geosynchronous Earth orbit (GEO), and power for electric propulsion of a LEO to GEO orbit transfer mission. Inputs to the analysis for all missions included launch and purchase costs of the array. For the orbit transfer mission, the launch and purchase costs of the electric propulsion system were added. Radiation flux as a function of altitude and rediation tolerance as a function of cell type were used to determine power degradation for each mission. Curves were generated that show the sensitivity of launch-array cost and total mission cost to a variety of input parameters for each mission. These parameters included mission duration, cover glass thickness, array specific cost, array specific mass, and solar cell efficiency. Solar concentration was considered and the sensitivities of cost to concentration ratio, concentrator costs, and concentrator mass were also evaluated. Results indicate that solar cell development should give a high priority to reducing array costs and that the development of low cost, lightweight, solar concentrators should be pursued.

  1. Suspension and Debarment Regulations

    EPA Pesticide Factsheets

    Governmentwide Nonprocurement Suspension and Debarment Guidelines and EPA Implementation. Executive Order 12549 provides for a governmentwide system of nonprocurment (grants and cooperative agreements) debarment and suspension.

  2. Teleseismic array analysis of upper mantle compressional velocity structure. Ph.D. Thesis

    NASA Technical Reports Server (NTRS)

    Walck, M. C.

    1984-01-01

    Relative array analysis of upper mantle lateral velocity variations in southern California, analysis techniques for dense data profiles, the P-wave upper mantle structure beneath an active spreading center: the Gulf of California, and the upper mantle under the Cascade ranges: a comparison with the Gulf of California are presented.

  3. Two dimensional barcode-inspired automatic analysis for arrayed microfluidic immunoassays

    PubMed Central

    Zhang, Yi; Qiao, Lingbo; Ren, Yunke; Wang, Xuwei; Gao, Ming; Tang, Yunfang; Jeff Xi, Jianzhong; Fu, Tzung-May; Jiang, Xingyu

    2013-01-01

    The usability of many high-throughput lab-on-a-chip devices in point-of-care applications is currently limited by the manual data acquisition and analysis process, which are labor intensive and time consuming. Based on our original design in the biochemical reactions, we proposed here a universal approach to perform automatic, fast, and robust analysis for high-throughput array-based microfluidic immunoassays. Inspired by two-dimensional (2D) barcodes, we incorporated asymmetric function patterns into a microfluidic array. These function patterns provide quantitative information on the characteristic dimensions of the microfluidic array, as well as mark its orientation and origin of coordinates. We used a computer program to perform automatic analysis for a high-throughput antigen/antibody interaction experiment in 10 s, which was more than 500 times faster than conventional manual processing. Our method is broadly applicable to many other microchannel-based immunoassays. PMID:24404030

  4. Reliability analysis method of a solar array by using fault tree analysis and fuzzy reasoning Petri net

    NASA Astrophysics Data System (ADS)

    Wu, Jianing; Yan, Shaoze; Xie, Liyang

    2011-12-01

    To address the impact of solar array anomalies, it is important to perform analysis of the solar array reliability. This paper establishes the fault tree analysis (FTA) and fuzzy reasoning Petri net (FRPN) models of a solar array mechanical system and analyzes reliability to find mechanisms of the solar array fault. The index final truth degree (FTD) and cosine matching function (CMF) are employed to resolve the issue of how to evaluate the importance and influence of different faults. So an improvement reliability analysis method is developed by means of the sorting of FTD and CMF. An example is analyzed using the proposed method. The analysis results show that harsh thermal environment and impact caused by particles in space are the most vital causes of the solar array fault. Furthermore, other fault modes and the corresponding improvement methods are discussed. The results reported in this paper could be useful for the spacecraft designers, particularly, in the process of redesigning the solar array and scheduling its reliability growth plan.

  5. Dielectric Constant of Suspensions

    NASA Astrophysics Data System (ADS)

    Mendelson, Kenneth S.; Ackmann, James J.

    1997-03-01

    We have used a finite element method to calculate the dielectric constant of a cubic array of spheres. Extensive calculations support preliminary conclusions reported previously (K. Mendelson and J. Ackmann, Bull. Am. Phys. Soc. 41), 657 (1996).. At frequencies below 100 kHz the real part of the dielectric constant (ɛ') shows oscillations as a function of the volume fraction of suspension. These oscillations disappear at low conductivities of the suspending fluid. Measurements of the dielectric constant (J. Ackmann, et al., Ann. Biomed. Eng. 24), 58 (1996). (H. Fricke and H. Curtis, J. Phys. Chem. 41), 729 (1937). are not sufficiently sensitive to show oscillations but appear to be consistent with the theoretical results.

  6. Shallow plumbing systems inferred from spatial analysis of pockmark arrays

    NASA Astrophysics Data System (ADS)

    Maia, A.; Cartwright, J. A.; Andersen, E.

    2016-12-01

    This study describes and analyses an extraordinary array of pockmarks at the modern seabed of the Lower Congo Basin (offshore Angola), in order to understand the fluid migration routes and shallow plumbing system of the area. The 3D seismic visualization of feeding conduits (pipes) allowed the identification of the source interval for the fluids expelled during pockmark formation. Spatial statistics are used to show the relationship between the underlying (polarised) polygonal fault (PPFs) patterns and seabed pockmarks distributions. Our results show PPFs control the linear arrangement of pockmarks and feeder pipes along fault strike, but faults do not act as conduits. Spatial statistics also revealed pockmark occurrence is not considered to be random, especially at short distances to nearest neighbours (<200m) where anti-clustering distributions suggest the presence of an exclusion zone around each pockmark in which no other pockmark will form. The results of this study are relevant for the understanding of shallow fluid plumbing systems in offshore settings, with implications on our current knowledge of overall fluid flow systems in hydrocarbon-rich continental margins.

  7. Computational analysis of vertical axis wind turbine arrays

    NASA Astrophysics Data System (ADS)

    Bremseth, J.; Duraisamy, K.

    2016-10-01

    Canonical problems involving single, pairs, and arrays of vertical axis wind turbines (VAWTs) are investigated numerically with the objective of understanding the underlying flow structures and their implications on energy production. Experimental studies by Dabiri (J Renew Sustain Energy 3, 2011) suggest that VAWTs demand less stringent spacing requirements than their horizontal axis counterparts and additional benefits may be obtained by optimizing the placement and rotational direction of VAWTs. The flowfield of pairs of co-/counter-rotating VAWTs shows some similarities with pairs of cylinders in terms of wake structure and vortex shedding. When multiple VAWTs are placed in a column, the extent of the wake is seen to spread further downstream, irrespective of the direction of rotation of individual turbines. However, the aerodynamic interference between turbines gives rise to regions of excess momentum between the turbines which lead to significant power augmentations. Studies of VAWTs arranged in multiple columns show that the downstream columns can actually be more efficient than the leading column, a proposition that could lead to radical improvements in wind farm productivity.

  8. Analysis of optical absorption in GaAs nanowire arrays.

    PubMed

    Guo, Haomin; Wen, Long; Li, Xinhua; Zhao, Zhifei; Wang, Yuqi

    2011-12-06

    In this study, the influence of the geometric parameters on the optical absorption of gallium arsenide [GaAs] nanowire arrays [NWAs] has been systematically analyzed using finite-difference time-domain simulations. The calculations reveal that the optical absorption is sensitive to the geometric parameters such as diameter [D], length [L], and filling ratio [D/P], and more efficient light absorption can be obtained in GaAs NWAs than in thin films with the same thickness due to the combined effects of intrinsic antireflection and efficient excitation of resonant modes. Optimized geometric parameters are obtained as follows: D = 180 nm, L = 2 μm, and D/P = 0.5. Meanwhile, the simulation on the absorption of GaAs NWAs for oblique incidence has also been carried out. The underlying physics is discussed in this work.PACS: 81.07.Gf nanowires; 81.05.Ea III-V semiconductors; 88.40.hj efficiency and performance of solar cells; 73.50.Pz photoconduction and photovoltaic effects.

  9. AVES: A high performance computer cluster array for the INTEGRAL satellite scientific data analysis

    NASA Astrophysics Data System (ADS)

    Federici, Memmo; Martino, Bruno Luigi; Ubertini, Pietro

    2012-07-01

    In this paper we describe a new computing system array, designed, built and now used at the Space Astrophysics and Planetary Institute (IAPS) in Rome, Italy, for the INTEGRAL Space Observatory scientific data analysis. This new system has become necessary in order to reduce the processing time of the INTEGRAL data accumulated during the more than 9 years of in-orbit operation. In order to fulfill the scientific data analysis requirements with a moderately limited investment the starting approach has been to use a `cluster' array of commercial quad-CPU computers, featuring the extremely large scientific and calibration data archive on line.

  10. An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data.

    PubMed

    Okoniewski, Michał J; Yates, Tim; Dibben, Siân; Miller, Crispin J

    2007-01-01

    Affymetrix exon arrays contain probesets intended to target every known and predicted exon in the entire genome, posing significant challenges for high-throughput genome-wide data analysis. X:MAP http://xmap.picr.man.ac.uk, an annotation database, and exonmap http://www.bioconductor.org/packages/2.0/bioc/html/exonmap.html, a BioConductor/R package, are designed to support fine-grained analysis of exon array data. The system supports the application of standard statistical techniques, prior to the use of genome scale annotation to provide gene-, transcript- and exon-level summaries and visualization tools.

  11. An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data

    PubMed Central

    Okoniewski, Michał J; Yates, Tim; Dibben, Siân; Miller, Crispin J

    2007-01-01

    Affymetrix exon arrays contain probesets intended to target every known and predicted exon in the entire genome, posing significant challenges for high-throughput genome-wide data analysis. X:MAP , an annotation database, and exonmap , a BioConductor/R package, are designed to support fine-grained analysis of exon array data. The system supports the application of standard statistical techniques, prior to the use of genome scale annotation to provide gene-, transcript- and exon-level summaries and visualization tools. PMID:17498294

  12. Discrimination of trace nitroaromatics using linear discriminant analysis on aerosol jet printed fluorescent sensor arrays

    NASA Astrophysics Data System (ADS)

    Bolse, N.; Eckstein, R.; Schend, M.; Habermehl, A.; Hernandez-Sosa, G.; Eschenbaum, C.; Lemmer, U.

    2017-05-01

    In this work, we report on fluorescent sensor arrays fabricated by aerosol jet printing on glass substrates to detect explosives-related nitroaromatic species. The printed sensor arrays consist of six different fluorescent polymers responding to nitroaromatic vapors through a photo-induced electron transfer. This results in a quenched fluorescence proportional to the vapor concentration. Distinct fluorescence quenching patterns are detected for nitroaromatic species including nitrobenzene, 1,3-dinitrobenzene and 2,4-dinitrotoluene. The detected fingerprints are evaluated at low concentrations of only 1, 3 and 10 parts-per-billion in air. Linear discriminant analysis is used to train each sensor array enabling the discrimination of the target analyte vapors. To investigate the reproducibility of multiple sensor arrays on a single substrate, the measured fluorescence quenching patterns are used to benchmark the linear discriminant models. For this purpose, the target analytes and vapor concentrations are predicted for each sensor array. On average, we report low and reproducible misclassification rates of about 4 % indicating excellent discriminatory abilities at low concentrations close to the detection limits. We conclude that digital printing of fluorescent polymers offers the potential to realize low-cost sensor arrays for a reliable detection of trace explosives.

  13. Array comparative genomic hybridization analysis of olfactory neuroblastoma.

    PubMed

    Guled, Mohamed; Myllykangas, Samuel; Frierson, Henry F; Mills, Stacey E; Knuutila, Sakari; Stelow, Edward B

    2008-06-01

    Olfactory neuroblastoma is an unusual neuroectodermal malignancy, which is thought to arise at the olfactory membrane of the sinonasal tract. Due to its rarity, little is understood regarding its molecular and cytogenetic abnormalities. The aim of the current study is to identify specific DNA copy number changes in olfactory neuroblastoma. Thirteen dissected tissue samples were analyzed using array comparative genomic hybridization. Our results show that gene copy number profiles of olfactory neuroblastoma samples are complex. The most frequent changes included gains at 7q11.22-q21.11, 9p13.3, 13q, 20p/q, and Xp/q, and losses at 2q31.1, 2q33.3, 2q37.1, 6q16.3, 6q21.33, 6q22.1, 22q11.23, 22q12.1, and Xp/q. Gains were more frequent than losses, and high-stage tumors showed more alterations than low-stage olfactory neuroblastoma. Frequent changes in high-stage tumors were gains at 13q14.2-q14.3, 13q31.1, and 20q11.21-q11.23, and loss of Xp21.1 (in 66% of cases). Gains at 5q35, 13q, and 20q, and losses at 2q31.1, 2q33.3, and 6q16-q22, were present in 50% of cases. The identified regions of gene copy number change have been implicated in a variety of tumors, especially carcinomas. In addition, our results indicate that gains in 20q and 13q may be important in the progression of this cancer, and that these regions possibly harbor genes with functional relevance in olfactory neuroblastoma.

  14. Particle distribution and dynamics in a complex fluid suspension studied by an image-analysis light-scattering technique

    NASA Astrophysics Data System (ADS)

    Algarni, Saad; Kashuri, H.; Iannacchione, Germano

    2011-03-01

    A relatively unique approach is described to analyze the scattered laser light from a complex fluid suspension for both static and dynamic behavior. Recent development of speckle analysis using CCD recorded direct imaging of the scattered coherent light has opened many new avenues for the application of static and dynamic light scattering experiments. The straightforward nature of this approach is somewhat offset by the constraints of the CCD chip size and placement to probe wide (or narrow) ranges of the wave vector. An alternative, and greatly simplified variation of this technique, is to convert the scattered light into diffuse scattering using a translucent screen placed at a desired location down beam then imaging the resulting pattern on the screen. A thru-beam stop and axis scales can be easily placed on the screen and recorded to improve the image quality and later analysis. One of many possible applications is the study of the particle (7nm diam aerosil SiO2 spheres) distribution and dynamics due to Brownian motion as well as sedimentation in a complex fluid (glycerol).

  15. Hodgkin-Huxley analysis of whole-cell outward rectifying K(+)-currents in protoplasts from tobacco cell suspension cultures.

    PubMed

    Van Duijn, B

    1993-02-01

    The voltage and time dependence of outward-rectifying K+ currents (IK,out) measured in protoplasts from tobacco cell suspension cultures in the whole-cell configuration of the patch-clamp technique are quantitatively analyzed. The voltage and time dependence was described according to the Hodgkin and Huxley model for IK,out currents in the squid giant axon, and to allow comparison, in analogy with the quantitative analysis of IK,out currents in Vicia faba guard cell protoplasts as described by Schroeder (J. Membrane Biol., 107:229-235, 1989). The IK,out from tobacco could be described by a similar model as the IK,out from guard cell protoplasts (i.e., sigmoid activation time course, activation variable raised to second power, single exponential deactivating tail currents, absence of inactivation). However, in contrast to guard cells, both the activation and deactivation time constants were strongly voltage dependent in tobacco protoplasts. The voltage dependence of the transition rates for channel opening and channel closing was slightly asymmetrical and inverse to the asymmetry found in guard cells. The data presented show that the voltage-dependent kinetic properties of the IK,out conductance of tobacco protoplasts are different from these properties in guard cell protoplasts. This analysis provides a basis for the study of IK,out conductance function and modulation.

  16. Glycerol-treated nuclear suspensions--an efficient preservation method for flow cytometric analysis of plant samples.

    PubMed

    Kolář, Filip; Lučanová, Magdalena; Těšitel, Jakub; Loureiro, João; Suda, Jan

    2012-02-01

    Flow cytometry (FCM) has been widely used in plant science to determine the amount of nuclear DNA, either in absolute units or in relative terms, as an indicator of ploidy. The requirement for fresh material in some applications, however, limits the value of FCM in field research, including plant biosystematics, ecology and population biology. Dried plant samples have proven to be a suitable alternative in some cases (large-scale ploidy screening) although tissue dehydration is often associated with a decrease in the quality of FCM analysis. The present study tested, using time-scale laboratory and in situ field experiments, the applicability of glycerol-treated nuclear suspension for DNA flow cytometry. We demonstrate that plant nuclei preserved in ice-cold buffer + glycerol solution remain intact for at least a few weeks and provide estimates of nuclear DNA content that are highly comparable and of similar quality to those obtained from fresh tissue. The protocol is compatible with both DAPI and propidium iodide staining, and allows not only the determination of ploidy level but also genome size in absolute units. Despite its higher laboriousness, glycerol-preserved nuclei apparently represent the most reliable way of sample preservation for genome size research. We assume that the protocol will provide a vital alternative to other preservation methods, especially when stringent criteria on the quality of FCM analysis are required.

  17. A new soft x-ray pulse height analysis array in the HL-2A tokamak

    SciTech Connect

    Zhang, Y. P.; Liu Yi; Yang, J. W.; Song, X. Y.; Liao, M.; Li, X.; Yuan, G. L.; Yang, Q. W.; Duan, X. R.; Pan, C. H.

    2009-12-15

    A new soft x-ray pulse height analysis (PHA) array including nine independent subsystems, on basis of a nonconventional software multichannel analysis system and a silicon drift detector (SDD) linear array consisting of nine high performance SDD detectors, has been developed in the HL-2A tokamak. The use of SDD has greatly improved the measurement accuracy and the spatiotemporal resolutions of the soft x-ray PHA system. Since the ratio of peak to background counts obtained from the SDD PHA system is very high, p/b{>=}3000, the soft x-ray spectra measured by the SDD PHA system can approximatively be regarded as electron velocity distribution. The electron velocity distribution can be well derived in the pure ohmic and auxiliary heating discharges. The performance of the new soft x-ray PHA array and the first experimental results with some discussions are presented.

  18. Young's modulus and SEM analysis of leg bones exposed to simulated microgravity by hind limb suspension (HLS)

    SciTech Connect

    Patel, Niravkumar D.; Mehta, Rahul; Ali, Nawab; Soulsby, Michael; Chowdhury, Parimal

    2013-04-19

    The aim of this study was to determine composition of the leg bone tissue of rats that were exposed to simulated microgravity by Hind-Limb Suspension (HLS) by tail for one week. The leg bones were cross sectioned, cleaned of soft tissues, dried and sputter coated, and then placed horizontally on the stage of a Scanning Electron Microscope (SEM) for analysis. Interaction of a 17.5 keV electron beam, incident from the vertical direction on the sample, generated images using two detectors. X-rays emitted from the sample during electron bombardment were measured with an Energy Dispersive Spectroscopy (EDS) feature of SEM using a liquid-nitrogen cooled Si(Li) detector with a resolution of 144 eV at 5.9 keV ({sub 25}Mn K{sub {alpha}} x-ray). K{sub {alpha}}- x-rays from carbon, oxygen, phosphorus and calcium formed the major peaks in the spectrum. Relative percentages of these elements were determined using a software that could also correct for ZAF factors namely Z(atomic number), A(X-ray absorption) and F(characteristic fluorescence). The x-rays from the control groups and from the experimental (HLS) groups were analyzed on well-defined parts (femur, tibia and knee) of the leg bone. The SEM analysis shows that there are definite changes in the hydroxyl or phosphate group of the main component of the bone structure, hydroxyapatite [Ca{sub 10}(PO{sub 4}){sub 6}(OH){sub 2}], due to hind limb suspension. In a separate experiment, entire leg bones (both from HLS and control rats) were subjected to mechanical stress by mean of a variable force. The stress vs. strain graph was fitted with linear and polynomial function, and the parameters reflecting the mechanical strength of the bone, under increasing stress, were calculated. From the slope of the linear part of the graph the Young's modulus for HLS bones were calculated and found to be 2.49 times smaller than those for control bones.

  19. Young's modulus and SEM analysis of leg bones exposed to simulated microgravity by hind limb suspension (HLS)

    NASA Astrophysics Data System (ADS)

    Patel, Niravkumar D.; Mehta, Rahul; Ali, Nawab; Soulsby, Michael; Chowdhury, Parimal

    2013-04-01

    The aim of this study was to determine composition of the leg bone tissue of rats that were exposed to simulated microgravity by Hind-Limb Suspension (HLS) by tail for one week. The leg bones were cross sectioned, cleaned of soft tissues, dried and sputter coated, and then placed horizontally on the stage of a Scanning Electron Microscope (SEM) for analysis. Interaction of a 17.5 keV electron beam, incident from the vertical direction on the sample, generated images using two detectors. X-rays emitted from the sample during electron bombardment were measured with an Energy Dispersive Spectroscopy (EDS) feature of SEM using a liquid-nitrogen cooled Si(Li) detector with a resolution of 144 eV at 5.9 keV (25Mn Kα x-ray). Kα- x-rays from carbon, oxygen, phosphorus and calcium formed the major peaks in the spectrum. Relative percentages of these elements were determined using a software that could also correct for ZAF factors namely Z(atomic number), A(X-ray absorption) and F(characteristic fluorescence). The x-rays from the control groups and from the experimental (HLS) groups were analyzed on well-defined parts (femur, tibia and knee) of the leg bone. The SEM analysis shows that there are definite changes in the hydroxyl or phosphate group of the main component of the bone structure, hydroxyapatite [Ca10(PO4)6(OH)2], due to hind limb suspension. In a separate experiment, entire leg bones (both from HLS and control rats) were subjected to mechanical stress by mean of a variable force. The stress vs. strain graph was fitted with linear and polynomial function, and the parameters reflecting the mechanical strength of the bone, under increasing stress, were calculated. From the slope of the linear part of the graph the Young's modulus for HLS bones were calculated and found to be 2.49 times smaller than those for control bones.

  20. A 2-D diode array and analysis software for verification of intensity modulated radiation therapy delivery.

    PubMed

    Jursinic, Paul A; Nelms, Ben E

    2003-05-01

    An analysis is made of a two-dimensional array of diodes that can be used for measuring dose generated in a plane by a radiation beam. This measuring device is the MapCHECK Model 1175 (Sun Nuclear, Melbourne, FL). This device has 445 N-type diodes in a 22 x 22 cm2 2-D array with variable spacing. The entire array of diodes is easily calibrated to allow for measurements in absolute dose. For IMRT quality assurance, each beam is measured individually with the beam central axis oriented perpendicular to the plane of diodes. Software is available to do the analytical comparison of measurements versus dose distributions calculated by a treatment planning system. Comparison criteria of percent difference and distance-to-agreement are defined by the operator. Data are presented that show the diode array has linear response when beam fluence changes by over 300-fold, which is typical of the level of modulation in intensity modulated radiation therapy, IMRT, beams. A linear dependence is also shown for a 100-fold change in monitors units delivered. Methods for how this device can be used in the clinic for quality assurance of IMRT fields are described. Measurements of typical IMRT beams that are modulated by compensators and MLCs are presented with comparisons to treatment planning system dose calculations. A time analysis is done for typical IMRT quality assurance measurements. The setup, calibration, and analysis time for the 2-D diode array are on the order of 20 min, depending on numbers of fields. This is significantly less time than required to do similar analysis with radiographic film. The 2-D diode array is ideal for per-plan quality assurance after an IMRT system is fully commissioned.

  1. Tissue matrix arrays for high-throughput screening and systems analysis of cell function.

    PubMed

    Beachley, Vince Z; Wolf, Matthew T; Sadtler, Kaitlyn; Manda, Srikanth S; Jacobs, Heather; Blatchley, Michael R; Bader, Joel S; Pandey, Akhilesh; Pardoll, Drew; Elisseeff, Jennifer H

    2015-12-01

    Cell and protein arrays have demonstrated remarkable utility in the high-throughput evaluation of biological responses; however, they lack the complexity of native tissue and organs. Here we spotted tissue extracellular matrix (ECM) particles as two-dimensional (2D) arrays or incorporated them with cells to generate three-dimensional (3D) cell-matrix microtissue arrays. We then investigated the responses of human stem, cancer and immune cells to tissue ECM arrays originating from 11 different tissues. We validated the 2D and 3D arrays as representative of the in vivo microenvironment by means of quantitative analysis of tissue-specific cellular responses, including matrix production, adhesion and proliferation, and morphological changes after culture. The biological outputs correlated with tissue proteomics, and network analysis identified several proteins linked to cell function. Our methodology enables broad screening of ECMs to connect tissue-specific composition with biological activity, providing a new resource for biomaterials research and further understanding of regeneration and disease mechanisms.

  2. Statistical analysis of array expression data as applied to the problem of tamoxifen resistance.

    PubMed

    Hilsenbeck, S G; Friedrichs, W E; Schiff, R; O'Connell, P; Hansen, R K; Osborne, C K; Fuqua, S A

    1999-03-03

    Although the emerging complementary DNA (cDNA) array technology holds great promise to discern complex patterns of gene expression, its novelty means that there are no well-established standards to guide analysis and interpretation of the data that it produces. We have used preliminary data generated with the CLONTECH Atlas human cDNA array to develop a practical approach to the statistical analysis of these data by studying changes in gene expression during the development of acquired tamoxifen resistance in breast cancer. For hybridization to the array, we prepared RNA from MCF-7 human breast cell tumors, isolated from our athymic nude mouse xenograft model of acquired tamoxifen resistance during estrogen-stimulated, tamoxifen-sensitive, and tamoxifen-resistant growth. Principal components analysis was used to identify genes with altered expression. Principal components analysis yielded three principal components that are interpreted as 1) the average level of gene expression, 2) the difference between estrogen-stimulated gene expression and the average of tamoxifen-sensitive and tamoxifen-resistant gene expression, and 3) the difference between tamoxifen-sensitive and tamoxifen-resistant gene expression. A bivariate (second and third principal components) 99% prediction region was used to identify outlier genes that exhibit altered expression. Two representative outlier genes, erk-2 and HSF-1 (heat shock transcription factor-1), were chosen for confirmatory study, and their predicted relative expression levels were confirmed in western blot analysis, suggesting that semiquantitative estimates are possible with array technology. Principal components analysis provides a useful and practical method to analyze gene expression data from a cDNA array. The method can identify broad patterns of expression alteration and, based on a small simulation study, will likely provide reasonable power to detect moderate-sized alterations in clinically relevant genes.

  3. Indoor air quality inspection and analysis system based on gas sensor array

    NASA Astrophysics Data System (ADS)

    Gao, Xiang; Wang, Mingjiang; Fan, Binwen

    2017-08-01

    A detection and analysis system capable of measuring the concentration of four major gases in indoor air is designed. It uses four gas sensors constitute a gas sensor array, to achieve four indoor gas concentration detection, while the detection of data for further processing to reduce the cross-sensitivity between the gas sensor to improve the accuracy of detection.

  4. GENE ARRAY ANALYSIS OF THE VENTRAL PROSTATE IN RATS EXPOSED TO EITHER VINCLOZOLIN OR PROCYMIDONE

    EPA Science Inventory

    GENE ARRAY ANALYSIS OF THE VENTRAL PROSTATE IN RATS EXPOSED TO EITHER VINCLOZOLIN OR PROCYMIDONE. MB Rosen, VS Wilson, JE Schmid, and LE Gray Jr. US EPA, ORD, NHEERL, RTP, NC.

    Vinclozolin (Vi) and procymidone (Pr) are antiandrogenic fungicides. While changes in gene expr...

  5. Cryostat Suspension System Analysis During Cool-Down and its Validation

    NASA Astrophysics Data System (ADS)

    Saha, Subrata; Gupta, Anjan Dutta; Ahammed, Manir

    2017-04-01

    A superconducting-magnet-cryostat has a stainless steel cylindrical bobbin on which the Nb-Ti superconducting coils are wound. The bobbin along with the coil is cooled with liquid helium down to 4.2 K temperature. The bobbin is suspended inside a vacuum chamber with the help of three horizontal and six vertical glass-epoxy support-links. A detail analysis is made to predict the movement of the coil and the support link forces. After cool-down of the coil results of analysis is verified with the experimental data and found good agreement with the analysis. This paper presents the details of analysis as well as how the results are used to formulate the methodology for safe operation of support links and proper alignment of the coil.

  6. Rawcopy: Improved copy number analysis with Affymetrix arrays

    PubMed Central

    Mayrhofer, Markus; Viklund, Björn; Isaksson, Anders

    2016-01-01

    Microarray data is subject to noise and systematic variation that negatively affects the resolution of copy number analysis. We describe Rawcopy, an R package for processing of Affymetrix CytoScan HD, CytoScan 750k and SNP 6.0 microarray raw intensities (CEL files). Noise characteristics of a large number of reference samples are used to estimate log ratio and B-allele frequency for total and allele-specific copy number analysis. Rawcopy achieves better signal-to-noise ratio and higher proportion of validated alterations than commonly used free and proprietary alternatives. In addition, Rawcopy visualizes each microarray sample for assessment of technical quality, patient identity and genome-wide absolute copy number states. Software and instructions are available at http://rawcopy.org. PMID:27796336

  7. Finite-difference time-domain analysis of light propagation in cholesteric liquid crystalline droplet array

    NASA Astrophysics Data System (ADS)

    Yamamoto, Kaho; Iwai, Yosuke; Uchida, Yoshiaki; Nishiyama, Norikazu

    2016-08-01

    We numerically analyzed the light propagation in cholesteric liquid crystalline (CLC) droplet array by the finite-difference time-domain (FDTD) method. The FDTD method successfully reproduced the experimental light path observed in the complicated photonic structure of the CLC droplet array more accurately than the analysis of CLC droplets by geometric optics with Bragg condition, and this method help us understand the polarization of the propagating light waves. The FDTD method holds great promise for the design of various photonic devices composed of curved photonic materials like CLC droplets and microcapsules.

  8. MATRIX DISCRIMINANT ANALYSIS WITH APPLICATION TO COLORIMETRIC SENSOR ARRAY DATA

    PubMed Central

    Suslick, Kenneth S.

    2014-01-01

    With the rapid development of nano-technology, a “colorimetric sensor array” (CSA) which is referred to as an optical electronic nose has been developed for the identification of toxicants. Unlike traditional sensors which rely on a single chemical interaction, CSA can measure multiple chemical interactions by using chemo-responsive dyes. The color changes of the chemo-responsive dyes are recorded before and after exposure to toxicants and serve as a template for classification. The color changes are digitalized in the form of a matrix with rows representing dye effects and columns representing the spectrum of colors. Thus, matrix-classification methods are highly desirable. In this article, we develop a novel classification method, matrix discriminant analysis (MDA), which is a generalization of linear discriminant analysis (LDA) for the data in matrix form. By incorporating the intrinsic matrix-structure of the data in discriminant analysis, the proposed method can improve CSA’s sensitivity and more importantly, specificity. A penalized MDA method, PMDA, is also introduced to further incorporate sparsity structure in discriminant function. Numerical studies suggest that the proposed MDA and PMDA methods outperform LDA and other competing discriminant methods for matrix predictors. The asymptotic consistency of MDA is also established. R code and data are available online as supplementary material. PMID:26783371

  9. Analysis of Small RNA Populations Using Hybridization to DNA Tiling Arrays.

    PubMed

    Boccara, Martine; Sarazin, Alexis; Billoud, Bernard; Bulski, Agnes; Chapell, Louise; Baulcombe, David; Colot, Vincent

    2017-01-01

    Epigenetic response to stress in plants involves changes in DNA methylation, histone modifications, and expression of small noncoding RNAs (sRNA). Here we present the method of analysis of differential expression of sRNA populations using DNA tiling arrays. sRNA extracted from Arabidopsis thaliana plants exposed to pathogen elicitor or control plants were reverse-transcribed into cDNAs, and subsequently hybridized after labeling to a custom-made DNA tiling array covering Arabidopsis chromosome 4. We first designed a control experiment with eight cDNA clones corresponding to sequences located on chromosome 4 and obtained robust and specific hybridization signals. Furthermore, hybridization signals along chromosome 4 were in good agreement with sRNA abundance as previously determined by massive parallel sequence signature (MPSS) in the case of untreated plants, but differed substantially after stress treatment. These results demonstrate the utility of hybridization to DNA tiling arrays to detect major changes in sRNA abundance.

  10. Analysis of the noise correlation in MRI coil arrays loaded with metamaterial magnetoinductive lenses.

    PubMed

    Algarin, Jose M; Breuer, Felix; Behr, Volker C; Freire, Manuel J

    2015-05-01

    A numerical method is shown for calculating the noise correlation coefficient in arrays of magnetic resonance imaging (MRI) coils loaded with capacitively-loaded ring metamaterial lenses, and in the presence of a conducting half-space resembling a sample. This numerical method is validated by comparison with experimental results obtained in two different experimental procedures for double check: noise resistance measurements with a network analyzer and noise correlation measurements in an MRI system. It is found that, for practical array configurations such as overlapping coils or capacitively-decoupled coils, the noise correlation coefficient turns negative for coils loaded with metamaterial lenses. In particular, the analysis is carried out with metamaterial structures known as magnetoinductive lenses, which have been demonstrated in previous works to improve the signal-to-noise ratio of MRI coils. Results are also shown to demonstrate that negative noise correlations have as an effect the improvement of the g-factor in coil arrays for parallel MRI.

  11. An analysis of three new infrasound arrays around Kīlauea Volcano

    USGS Publications Warehouse

    Thelen, Weston A.; Cooper, Jennifer

    2015-01-01

    A network of three new infrasound station arrays was installed around Kīlauea Volcano between July 2012 and September 2012, and a preliminary analysis of open-vent monitoring has been completed by Hawaiian Volcano Observatory (HVO). Infrasound is an emerging monitoring method in volcanology that detects perturbations in atmospheric pressure at frequencies below 20 Hz, which can result from volcanic events that are not always observed optically or thermally. Each array has the capability to detect various infrasound events as small as 0.05 Pa as measured at the array site. The infrasound monitoring network capabilities are demonstrated through case studies of rockfalls, pit collapses, and rise-fall cycles at Halema'uma'u Crater and Pu'u 'Ōʻō.

  12. Potential of minicomputer/array-processor system for nonlinear finite-element analysis

    NASA Technical Reports Server (NTRS)

    Strohkorb, G. A.; Noor, A. K.

    1983-01-01

    The potential of using a minicomputer/array-processor system for the efficient solution of large-scale, nonlinear, finite-element problems is studied. A Prime 750 is used as the host computer, and a software simulator residing on the Prime is employed to assess the performance of the Floating Point Systems AP-120B array processor. Major hardware characteristics of the system such as virtual memory and parallel and pipeline processing are reviewed, and the interplay between various hardware components is examined. Effective use of the minicomputer/array-processor system for nonlinear analysis requires the following: (1) proper selection of the computational procedure and the capability to vectorize the numerical algorithms; (2) reduction of input-output operations; and (3) overlapping host and array-processor operations. A detailed discussion is given of techniques to accomplish each of these tasks. Two benchmark problems with 1715 and 3230 degrees of freedom, respectively, are selected to measure the anticipated gain in speed obtained by using the proposed algorithms on the array processor.

  13. Efficient Analysis of Systems Biology Markup Language Models of Cellular Populations Using Arrays.

    PubMed

    Watanabe, Leandro; Myers, Chris J

    2016-08-19

    The Systems Biology Markup Language (SBML) has been widely used for modeling biological systems. Although SBML has been successful in representing a wide variety of biochemical models, the core standard lacks the structure for representing large complex regular systems in a standard way, such as whole-cell and cellular population models. These models require a large number of variables to represent certain aspects of these types of models, such as the chromosome in the whole-cell model and the many identical cell models in a cellular population. While SBML core is not designed to handle these types of models efficiently, the proposed SBML arrays package can represent such regular structures more easily. However, in order to take full advantage of the package, analysis needs to be aware of the arrays structure. When expanding the array constructs within a model, some of the advantages of using arrays are lost. This paper describes a more efficient way to simulate arrayed models. To illustrate the proposed method, this paper uses a population of repressilator and genetic toggle switch circuits as examples. Results show that there are memory benefits using this approach with a modest cost in runtime.

  14. Analysis of radiometric signal in sedimentating suspension flow in open channel

    NASA Astrophysics Data System (ADS)

    Zych, Marcin; Hanus, Robert; Petryka, Leszek; Świsulski, Dariusz; Doktor, Marek; Mastej, Wojciech

    2015-05-01

    The article discusses issues related to the estimation of the sedimentating solid particles average flow velocity in an open channel using radiometric methods. Due to the composition of the compound, which formed water and diatomite, received data have a very weak signal to noise ratio. In the process analysis the known determining of the solid phase transportation time delay the classical cross-correlation function is the most reliable method. The use of advanced frequency analysis based on mutual spectral density function and wavelet transform of recorded signals allows a reduction of the noise contribution.

  15. Discrimination of honeys using colorimetric sensor arrays, sensory analysis and gas chromatography techniques.

    PubMed

    Tahir, Haroon Elrasheid; Xiaobo, Zou; Xiaowei, Huang; Jiyong, Shi; Mariod, Abdalbasit Adam

    2016-09-01

    Aroma profiles of six honey varieties of different botanical origins were investigated using colorimetric sensor array, gas chromatography-mass spectrometry (GC-MS) and descriptive sensory analysis. Fifty-eight aroma compounds were identified, including 2 norisoprenoids, 5 hydrocarbons, 4 terpenes, 6 phenols, 7 ketones, 9 acids, 12 aldehydes and 13 alcohols. Twenty abundant or active compounds were chosen as key compounds to characterize honey aroma. Discrimination of the honeys was subsequently implemented using multivariate analysis, including hierarchical clustering analysis (HCA) and principal component analysis (PCA). Honeys of the same botanical origin were grouped together in the PCA score plot and HCA dendrogram. SPME-GC/MS and colorimetric sensor array were able to discriminate the honeys effectively with the advantages of being rapid, simple and low-cost. Moreover, partial least squares regression (PLSR) was applied to indicate the relationship between sensory descriptors and aroma compounds. Copyright © 2016 Elsevier Ltd. All rights reserved.

  16. Sample processing for DNA chip array-based analysis of enterohemorrhagic Escherichia coli (EHEC).

    PubMed

    Basselet, Pascal; Wegrzyn, Grzegorz; Enfors, Sven-Olof; Gabig-Ciminska, Magdalena

    2008-10-13

    Exploitation of DNA-based analyses of microbial pathogens, and especially simultaneous typing of several virulence-related genes in bacteria is becoming an important objective of public health these days. A procedure for sample processing for a confirmative analysis of enterohemorrhagic Escherichia coli (EHEC) on a single colony with DNA chip array was developed and is reported here. The protocol includes application of fragmented genomic DNA from ultrasonicated colonies. The sample processing comprises first 2.5 min of ultrasonic treatment, DNA extraction (2x), and afterwards additional 5 min ultrasonication. Thus, the total sample preparation time for a confirmative analysis of EHEC is nearly 10 min. Additionally, bioinformatic revisions were performed in order to design PCR primers and array probes specific to most conservative regions of the EHEC-associated genes. Six strains with distinct pathogenic properties were selected for this study. At last, the EHEC chip array for a parallel and simultaneous detection of genes etpC-stx1-stx2-eae was designed and examined. This should permit to sense all currently accessible variants of the selected sequences in EHEC types and subtypes. In order to implement the DNA chip array-based analysis for direct EHEC detection the sample processing was established in course of this work. However, this sample preparation mode may also be applied to other types of EHEC DNA-based sensing systems.

  17. Clearance Analysis of Node 3 Aft CBM to the Stowed FGB Solar Array

    NASA Technical Reports Server (NTRS)

    Liddle, Donn

    2014-01-01

    In early 2011, the ISS Vehicle Configuration Office began considering the relocation of the Permanent Multipurpose Module (PMM) to the aft facing Common Berthing Mechanism (CBM) on Node 3 to open a berthing location for visiting vehicles on the Node 1 nadir CBM. In this position, computer-aided design (CAD) models indicated that the aft end of the PMM would be only a few inches from the stowed Functional Cargo Block (FGB) port solar array. To validate the CAD model clearance analysis, in the late summer of 2011 the Image Science and Analysis Group (ISAG) was asked to determine the true geometric relationship between the on-orbit aft facing Node 3 CBM and the FGB port solar array. The desired measurements could be computed easily by photogrammetric analysis if current imagery of the ISS hardware were obtained. Beginning in the fall of 2011, ISAG used the Dynamic Onboard Ubiquitous Graphics (DOUG) program to design a way to acquire imagery of the aft face of Node 3, the aft end-cone of Node 1, the port side of pressurized mating adapter 1 (PMA1), and the port side of the FGB out to the tip of the port solar array using cameras on the Space Station Remote Manipulator System (SSRMS). This was complicated by the need to thread the SSRMS under the truss, past Node 3 and the Cupola, and into the space between the aft side of Node 3 and the FGB solar array to acquire more than 100 images from multiple positions. To minimize the number of SSRMS movements, the Special Purpose Dexterous Manipulator (SPDM) would be attached to the SSRMS. This would make it possible to park the SPDM in one position and acquire multiple images by changing the viewing orientation of the SPDM body cameras using the pan/tilt units on which the cameras are mounted. Using this implementation concept, ISAG identified four SSRMS/SPDM positions from which all of the needed imagery could be acquired. Based on a photogrammetric simulation, it was estimated that the location of the FGB solar array could be

  18. An integrated analysis-synthesis array system for spatial sound fields.

    PubMed

    Bai, Mingsian R; Hua, Yi-Hsin; Kuo, Chia-Hao; Hsieh, Yu-Hao

    2015-03-01

    An integrated recording and reproduction array system for spatial audio is presented within a generic framework akin to the analysis-synthesis filterbanks in discrete time signal processing. In the analysis stage, a microphone array "encodes" the sound field by using the plane-wave decomposition. Direction of arrival of plane-wave components that comprise the sound field of interest are estimated by multiple signal classification. Next, the source signals are extracted by using a deconvolution procedure. In the synthesis stage, a loudspeaker array "decodes" the sound field by reconstructing the plane-wave components obtained in the analysis stage. This synthesis stage is carried out by pressure matching in the interior domain of the loudspeaker array. The deconvolution problem is solved by truncated singular value decomposition or convex optimization algorithms. For high-frequency reproduction that suffers from the spatial aliasing problem, vector panning is utilized. Listening tests are undertaken to evaluate the deconvolution method, vector panning, and a hybrid approach that combines both methods to cover frequency ranges below and above the spatial aliasing frequency. Localization and timbral attributes are considered in the subjective evaluation. The results show that the hybrid approach performs the best in overall preference. In addition, there is a trade-off between reproduction performance and the external radiation.

  19. Integral Equation Formulation for the Analysis of Open-Ended Rectangular Waveguide Arrays on Cylindrical Surfaces

    NASA Astrophysics Data System (ADS)

    Gerini, G.; Visser, H. J.

    In this paper we present an efficient theoretical formulation for a full-wave analysis of phased arrays conformal to cylindrical structures. The theory is based on an integral equation formulation and the Unit Cell Approach. Thanks to its generality and efficiency, this method represents a good starting point for the development of accurate CAD tools for the analysis of integrated cylindrical structures including radome, coaxial excitations and tuning elements in waveguide.

  20. Random-walk analysis of displacement statistics of particles in concentrated suspensions of hard spheres

    NASA Astrophysics Data System (ADS)

    van Megen, W.

    2006-01-01

    Mean-squared displacements (MSDs) of colloidal fluids of hard spheres are analyzed in terms of a random walk, an analysis which assumes that the process of structural relaxation among the particles can be described in terms of thermally driven memoryless encounters. For the colloidal fluid in thermodynamic equilibrium the magnitude of the stretching of the MSD is able to be reconciled by a bias in the walk. This description fails for the under-cooled colloidal fluid.

  1. A laboratory study on sediment resuspension within arrays of rigid cylinders

    NASA Astrophysics Data System (ADS)

    Tinoco, Rafael O.; Coco, Giovanni

    2016-06-01

    We present results from laboratory experiments on flow through submerged arrays of rigid cylinders embedded in a sandy bed. Using rigid, cylindrical elements to mimic vegetation and benthos, we account for only the physical effects resulting from their presence, eliminating biological factors, such as biofilms and root systems. In line with previous findings, rigid arrays modify the flow mean and turbulent velocity statistics. However, even if the flow speed is significantly damped within dense arrays, the amount of sediment that gets lifted into suspension increases as the density of the array increases due to array- and cylinder-scale turbulence. We present a first attempt to provide predictive relationships of suspended sediment concentration using an alternative approach for the Shields parameter with an empirical coefficient to account for turbulence generated by submerged arrays of rigid cylinders. A similar analysis, using a ratio of populated to non-populated Shields parameter, is conducted to predict resuspension as a function of array density.

  2. Analysis of boutique arrays: a universal method for the selection of the optimal data normalization procedure.

    PubMed

    Uszczyńska, Barbara; Zyprych-Walczak, Joanna; Handschuh, Luiza; Szabelska, Alicja; Kaźmierczak, Maciej; Woronowicz, Wiesława; Kozłowski, Piotr; Sikorski, Michał M; Komarnicki, Mieczysław; Siatkowski, Idzi; Figlerowicz, Marek

    2013-09-01

    DNA microarrays, which are among the most popular genomic tools, are widely applied in biology and medicine. Boutique arrays, which are small, spotted, dedicated microarrays, constitute an inexpensive alternative to whole-genome screening methods. The data extracted from each microarray-based experiment must be transformed and processed prior to further analysis to eliminate any technical bias. The normalization of the data is the most crucial step of microarray data pre-processing and this process must be carefully considered as it has a profound effect on the results of the analysis. Several normalization algorithms have been developed and implemented in data analysis software packages. However, most of these methods were designed for whole-genome analysis. In this study, we tested 13 normalization strategies (ten for double-channel data and three for single-channel data) available on R Bioconductor and compared their effectiveness in the normalization of four boutique array datasets. The results revealed that boutique arrays can be successfully normalized using standard methods, but not every method is suitable for each dataset. We also suggest a universal seven-step workflow that can be applied for the selection of the optimal normalization procedure for any boutique array dataset. The described workflow enables the evaluation of the investigated normalization methods based on the bias and variance values for the control probes, a differential expression analysis and a receiver operating characteristic curve analysis. The analysis of each component results in a separate ranking of the normalization methods. A combination of the ranks obtained from all the normalization procedures facilitates the selection of the most appropriate normalization method for the studied dataset and determines which methods can be used interchangeably.

  3. [Analysis of oxygen transfer in bioreactors for fungus broths. 2. Suspensions of P. chrysogenum mycelial associations].

    PubMed

    Caşcaval, D; Galaction, Anca-Irina; Cămăruţ, Stefănica

    2009-01-01

    Unlike the P. shermanii and S. cerevisiae cultures, the study on the distribution of oxygen transfer in stirred bioreactor for P. chrysogenum pellets broths indicated that this process is controlled mainly by the deposition tendency of the biomass. Similar to the previously studied systems, the analysis of k(1)a distribution indicated its heterogeneity on the bioreactor height, the oxygen transfer rate increasing from position 1 to 4. Contrary to the bacterial and yeasts cultures, the intensification of aeration promoted the initial reduction of k(1)a, which reached a minimum level, followed by its increase, due to the flooding phenomenon.

  4. EDITORIAL: Colloidal suspensions Colloidal suspensions

    NASA Astrophysics Data System (ADS)

    Petukhov, Andrei; Kegel, Willem; van Duijneveldt, Jeroen

    2011-05-01

    Special issue in honour of Henk Lekkerkerker's 65th birthday Professor Henk N W Lekkerkerker is a world-leading authority in the field of experimental and theoretical soft condensed matter. On the occasion of his 65th birthday in the summer of 2011, this special issue celebrates his many contributions to science. Henk Lekkerkerker obtained his undergraduate degree in chemistry at the University of Utrecht (1968) and moved to Calgary where he received his PhD in 1971. He moved to Brussels as a NATO fellow at the Université Libre de Bruxelles and was appointed to an assistant professorship (1974), an associate professorship (1977) and a full professorship (1980) in physical chemistry at the Vrije Universiteit Brussel. In 1985 he returned to The Netherlands to take up a professorship at the Van 't Hoff Laboratory, where he has been ever since. He has received a series of awards during his career, including the Onsager Medal (1999) of the University of Trondheim, the Bakhuys Roozeboom Gold Medal (2003) of the Royal Dutch Academy of Arts and Sciences (KNAW), the ECIS-Rhodia European Colloid and Interface Prize (2003), and the Liquid Matter Prize of the European Physical Society (2008). He was elected a member of KNAW in 1996, was awarded an Academy Chair position in 2005, and has held several visiting lectureships. Henk's work focuses on phase transitions in soft condensed matter, and he has made seminal contributions to both the theoretical and experimental aspects of this field. Here we highlight three major themes running through his work, and a few selected publications. So-called depletion interactions may lead to phase separation in colloid-polymer mixtures, and Henk realised that the partitioning of polymer needs to be taken into account to describe the phase behaviour correctly [1]. Colloidal suspensions can be used as model fluids, with the time- and length-scales involved leading to novel opportunities, notably the direct observation of capillary waves at a

  5. Zarya Energy Balance Analysis: The Effect of Spacecraft Shadowing on Solar Array Performance

    NASA Technical Reports Server (NTRS)

    Hoffman, David J.; Kolosov, Vladimir

    1999-01-01

    The first element of the International Space Station (ISS). Zarya, was funded by NASA and built by the Russian aerospace company Khrunichev State Research and Production Space Center (KhSC). NASA Glenn Research Center (GRC) and KhSC collaborated in performing analytical predictions of the on-orbit electrical performance of Zarya's solar arrays. GRC assessed the pointing characteristics of and shadow patterns on Zarya's solar arrays to determine the average solar energy incident on the arrays. KHSC used the incident energy results to determine Zarya's electrical power generation capability and orbit-average power balance. The power balance analysis was performed over a range of solar beta angles and vehicle operational conditions. This analysis enabled identification of problems that could impact the power balance for specific flights during ISS assembly and was also used as the primary means of verifying that Zarya complied with electrical power requirements. Analytical results are presented for select stages in the ISS assembly sequence along with a discussion of the impact of shadowing on the electrical performance of Zarya's solar arrays.

  6. Spherical harmonic analysis of the sound radiation from omnidirectional loudspeaker arrays

    NASA Astrophysics Data System (ADS)

    Pasqual, A. M.

    2014-09-01

    Omnidirectional sound sources are widely used in room acoustics. These devices are made up of loudspeakers mounted on a spherical or polyhedral cabinet, where the dodecahedral shape prevails. Although such electroacoustic sources have been made readily available to acousticians by many manufacturers, an in-depth investigation of their vibroacoustic behavior has not been provided yet. In order to fulfill this lack, this paper presents a theoretical study of the sound radiation from omnidirectional loudspeaker arrays, which is carried out by using a mathematical model based on the spherical harmonic analysis. Eight different loudspeaker arrangements on the sphere are considered: the well-known five Platonic solid layouts and three extremal system layouts. The latter possess useful properties for spherical loudspeaker arrays used as directivity controlled sound sources, so that these layouts are included here in order to investigate whether or not they could be of interest as omnidirectional sources as well. It is shown through a comparative analysis that the dodecahedral array leads to the lowest error in producing an omnidirectional sound field and to the highest acoustic power, which corroborates the prevalence of such a layout. In addition, if a source with less than 12 loudspeakers is required, it is shown that tetrahedra or hexahedra can be used alternatively, whereas the extremal system layouts are not interesting choices for omnidirectional loudspeaker arrays.

  7. Oil-sealed femtoliter fiber-optic arrays for single molecule analysis.

    PubMed

    Zhang, Huaibin; Nie, Shuai; Etson, Candice M; Wang, Raymond M; Walt, David R

    2012-06-21

    This paper describes a novel method for fabricating and sealing high-density arrays of femtoliter reaction chambers. We chemically etch one end of a 2.3 mm diameter glass optical fiber bundle to create an array of microwells. We then use a contact printing method to selectively modify the surface of the material between microwells with a hydrophobic silane. This modification makes it possible to fill the wells with aqueous solution and then seal them with a droplet of oil, forming an array of isolated reaction chambers. Individual β-galactosidase molecules trapped in these reaction chambers convert a substrate into a fluorescent product that can be readily detected because a high local concentration of product is achieved. This binary readout can be used for ultra-sensitive measurements of enzyme concentration. We observed that the percentage of wells showing enzyme activity was linearly dependent on the concentration of soluble β-galactosidase in the picomolar range. A similar response was also observed for streptavidin-β-galactosidase captured by biotinylated beads. These arrays are also suitable for performing single-molecule kinetics studies on hundreds to thousands of enzyme molecules simultaneously. We observed a broad distribution of catalytic rates for individual β-galactosidase molecules trapped in the microwells, in agreement with previous studies using similar arrays that were mechanically sealed. We have further demonstrated that this femtoliter fiber-optic array can be integrated into a PDMS microfluidic channel system and sealed with oil on-chip, creating an easy to use and high-throughput device for single-molecule analysis.

  8. Sensitivity- and effort-gain analysis: multilead ECG electrode array selection for activation time imaging.

    PubMed

    Hintermüller, Christoph; Seger, Michael; Pfeifer, Bernhard; Fischer, Gerald; Modre, Robert; Tilg, Bernhard

    2006-10-01

    Methods for noninvasive imaging of electric function of the heart might become clinical standard procedure the next years. Thus, the overall procedure has to meet clinical requirements as an easy and fast application. In this paper, we propose a new electrode array which improves the resolution of methods for activation time imaging considering clinical constraints such as easy to apply and compatibility with routine leads. For identifying the body-surface regions where the body surface potential (BSP) is most sensitive to changes in transmembrane potential (TMP), a virtual array method was used to compute local linear dependency (LLD) maps. The virtual array method computes a measure for the LLD in every point on the body surface. The most suitable number and position of the electrodes within the sensitive body surface regions was selected by constructing effort gain (EG) plots. Such a plot depicts the relative attainable rank of the leadfield matrix in relation to the increase in number of electrodes required to build the electrode array. The attainable rank itself was computed by a detector criterion. Such a criterion estimates the maximum number of source space eigenvectors not covered by noise when being mapped to the electrode space by the leadfield matrix and recorded by a detector. From the sensitivity maps, we found that the BSP is most sensitive to changes in TMP on the upper left frontal and dorsal body surface. These sensitive regions are covered best by an electrode array consisting of two L-shaped parts of approximately 30 cm x 30 cm and approximately 20 cm x 20 cm. The EG analysis revealed that the array meeting clinical requirements best and improving the resolution of activation time imaging consists of 125 electrodes with a regular horizontal and vertical spacing of 2-3 cm.

  9. Array analysis methods for detection, classification and location of seismic sources: a first evaluation for aftershock analysis using dense temporary post-seismic array network

    NASA Astrophysics Data System (ADS)

    Poiata, N.; Satriano, C.; Vilotte, J.; Bernard, P.

    2012-12-01

    Detection, separation, classification and location of distributed non stationary seismic sources in broadband noisy environment is an important problem in seismology, in particular for monitoring the high-level post-seismic activity following large subduction earthquakes, like the off-shore Maule (Mw 8.8, 2010) earthquake in Central Chile. Multiple seismic arrays, and local antenna, distributed over a region allow exploiting frequency selective coherence of the signals that arrive at widely-separated array stations, leading to improved detection, convolution blind source separation, and location of distributed non stationary sources. We present here first results on the investigation of time-frequency adaptive array analysis techniques for detection and location of broadband distributed seismic events recorded by the dense temporary seismic network (International Maule Aftershock Deployment, IMAD) installed for monitoring the high-level seismic activity following the 27 February 2010 Maule earthquake (Mw 8.8). This seismic network is characterized by a large aperture, with variable inter-station distances, corroborated with a high level of distributed near and far field seismic source activity and noise. For this study, we first extract from the post-seismic network a number of seismic arrays distributed over the region covered by this network. A first aspect is devoted to passive distributed seismic sources detection, classification and separation. We investigate a number of narrow and wide band signal analysis methods both in time and time-frequency domains for energy arrival detection and tracking, including time adaptive higher order statistics, e.g. like kurtosis, and multiband band-pass filtering, together with adaptive time-frequency transformation and extraction techniques. We demonstrate that these techniques provide superior resolution and robustness than classical STA/LTA techniques in particular in the case of distributed sources with potential signal

  10. [COMPARATIVE CYTOGENETIC ANALYSIS OF MONOLAYER AND SUSPENSION CHINESE HAMSTER OVARY CELL LINES CHO(dhfr-)].

    PubMed

    Stefanova, V N; Yartseva, N M; Petrov, A V

    2015-01-01

    The karyotypes of CHO(dhfr-) and CHO(dhfr-)/susp Chinese hamster ovary cell lines were investigated with the use of GTG-staining. Modal chromosome set consists of 20 and 18 chromosomes respectively. The karyotypes of both cell lines were stable with constant ratio of normal chromosomes and chromosomes with structural rearrangements. Monosomy for chromosomes 1, 2, 4, 5, 8 was observed in both cell lines and for chromosome 9 in CHO(dhfr-)/susp cell line. The differences between CHO(dhfr-) cell lines studied by us consists of inclusion of part of chromosome 7 in der(6)t(1;6), rearrangement of del(5) and monosomy of chromosome 9. It was shown that in karyotypes of all CHO cell lines studied up today there are 5 common structurally chromosome rearrangements: del(2), inv(3), add(6), del(9) and mar1. In both CHO(dhfr-) cell lines investigated by us three unique chromosome rearrangements: del(1), der(6)t(1,6) and mar3 were revealed. Necessity of simultaneous GTG and FISH analysis of chromosomes rearrangements in the CHO cell lines under study is discussed.

  11. Meta-analysis of the effects of sometribove zinc suspension on the production and health of lactating dairy cows.

    PubMed

    St-Pierre, Normand R; Milliken, George A; Bauman, Dale E; Collier, Robert J; Hogan, Joseph S; Shearer, Jan K; Smith, K Larry; Thatcher, William W

    2014-09-01

    To provide an updated evaluation of the efficacy and safety of sometribove zinc suspension (rbST-Zn), a form of recombinant bovine somatotropin, in lactating dairy cows. Meta-analysis. 26 studies published in peer-reviewed journals or reviewed by a regulatory agency. To be included, a study had to involve the use of the rbST-Zn formulation available to US producers in accordance with the label instructions for treatment initiation (57 to 70 days postpartum), dose (500 mg, q 14 d), and route (SC). For cows treated with rbST-Zn, mean milk, 3.5% fat-corrected milk, fat, and protein yields were increased by 4.00, 4.04, 0.144, and 0.137 kg/d (8.8, 8.89, 0.32, and 0.30 lb/d), respectively; however, the concentration of milk components did not change. Pregnancy proportion for the first 2 breeding cycles was increased by 5.4%, and pregnancy proportion for the duration of the trial was reduced by 5.5% for rbST-Zn-treated cows, compared with proportions for untreated cows. Mean body condition score (1 to 5 scale) was reduced by 0.06 points during the period of rbST-Zn use for treated cows. Administration of rbST-Zn had no effect on milk somatic cell count, the number of days to pregnancy, or inseminations per pregnancy; rates of fetal loss, twins, cystic ovaries, clinical lameness, lameness lesions, or traumatic lesions of the integumentary system; and odds of clinical mastitis or culling. Results indicated that rbST-Zn administration to dairy cows effectively increases milk production with no adverse effects on cow health and well-being.

  12. Heat transfer analysis on peristaltically induced motion of particle-fluid suspension with variable viscosity: Clot blood model.

    PubMed

    Bhatti, M M; Zeeshan, A; Ellahi, R

    2016-12-01

    In this article, heat transfer analysis on clot blood model of the particle-fluid suspension through a non-uniform annulus has been investigated. The blood propagating along the whole length of the annulus was induced by peristaltic motion. The effects of variable viscosity and slip condition are also taken into account. The governing flow problem is modeled using lubrication approach by taking the assumption of long wavelength and creeping flow regime. The resulting equation for fluid phase and particle phase is solved analytically and closed form solutions are obtained. The physical impact of all the emerging parameters is discussed mathematically and graphically. Particularly, we considered the effects of particle volume fraction, slip parameter, the maximum height of clot, viscosity parameter, average volume flow rate, Prandtl number, Eckert number and fluid parameter on temperature profile, pressure rise and friction forces for outer and inner tube. Numerical computations have been used to determine the behavior of pressure rise and friction along the whole length of the annulus. The present study is also presented for an endoscope as a special case of our study. It is observed that greater influence of clot tends to rise the pressure rise significantly. It is also found that temperature profile increases due to the enhancement in Prandtl number, Eckert number, and fluid parameter. The present study reveals that friction forces for outer tube have higher magnitude as compared to the friction forces for an inner tube. In fact, the results for present study can also be reduced to the Newtonian fluid by taking ζ → ∞.

  13. Integrated dynamic analysis simulation of space stations with controllable solar array

    NASA Technical Reports Server (NTRS)

    Heinrichs, J. A.; Fee, J. J.

    1972-01-01

    A methodology is formulated and presented for the integrated structural dynamic analysis of space stations with controllable solar arrays and non-controllable appendages. The structural system flexibility characteristics are considered in the dynamic analysis by a synthesis technique whereby free-free space station modal coordinates and cantilever appendage coordinates are inertially coupled. A digital simulation of this analysis method is described and verified by comparison of interaction load solutions with other methods of solution. Motion equations are simulated for both the zero gravity and artificial gravity (spinning) orbital conditions. Closed loop controlling dynamics for both orientation control of the arrays and attitude control of the space station are provided in the simulation by various generic types of controlling systems. The capability of the simulation as a design tool is demonstrated by utilizing typical space station and solar array structural representations and a specific structural perturbing force. Response and interaction load solutions are presented for this structural configuration and indicate the importance of using an integrated type analysis for the predictions of structural interactions.

  14. Ferricyanide-based analysis of aqueous lignin suspension revealed sequestration of water-soluble lignin moieties

    SciTech Connect

    Joshua, C. J.; Simmons, B. A.; Singer, S. W.

    2016-06-02

    This study describes the application of a ferricyanide-based assay as a simple and inexpensive assay for rapid analysis of aqueous lignin samples. The assay measures the formation of Prussian blue from the redox reaction between a mixture of potassium ferricyanide and ferric chloride, and phenolic hydroxyl groups of lignin or lignin-derived phenolic moieties. This study revealed that soluble lignin moieties exhibited stronger ferricyanide reactivity than insoluble aggregates. The soluble lignin moieties exhibited higher ferricyanide reactivity because of increased access of the phenolic hydroxyl groups to the ferricyanide reagents. Ferricyanide reactivity of soluble lignin moieties correlated inversely with the molecular weight distributions of the molecules, probably due to the involvement of phenolic hydroxyl groups in bond formation. The insoluble lignin aggregates exhibited low ferricyanide reactivity due to sequestration of the phenolic hydroxyl groups within the solid matrix. The study also highlighted the sequestration of polydispersed water-soluble lignin moieties by insoluble aggregates. The sequestered moieties were released by treatment with 0.01 M NaOH at 37 °C for 180 min. The redox assay was effective on different types of lignin extracts such as Klason lignin from switchgrass, ionic-liquid derived lignin from Eucalyptus and alkali lignin extracts. The assay generated a distinct profile for each lignin sample that was highly reproducible. The assay was also used to monitor consumption of syringic acid by Sphingobium sp. SYK-6. The simplicity and reproducibility of this assay makes it an excellent and versatile tool for qualitative and semi-quantitative characterization and comparative profiling of aqueous lignin samples.

  15. Ferricyanide-based analysis of aqueous lignin suspension revealed sequestration of water-soluble lignin moieties

    DOE PAGES

    Joshua, C. J.; Simmons, B. A.; Singer, S. W.

    2016-06-02

    This study describes the application of a ferricyanide-based assay as a simple and inexpensive assay for rapid analysis of aqueous lignin samples. The assay measures the formation of Prussian blue from the redox reaction between a mixture of potassium ferricyanide and ferric chloride, and phenolic hydroxyl groups of lignin or lignin-derived phenolic moieties. This study revealed that soluble lignin moieties exhibited stronger ferricyanide reactivity than insoluble aggregates. The soluble lignin moieties exhibited higher ferricyanide reactivity because of increased access of the phenolic hydroxyl groups to the ferricyanide reagents. Ferricyanide reactivity of soluble lignin moieties correlated inversely with the molecular weightmore » distributions of the molecules, probably due to the involvement of phenolic hydroxyl groups in bond formation. The insoluble lignin aggregates exhibited low ferricyanide reactivity due to sequestration of the phenolic hydroxyl groups within the solid matrix. The study also highlighted the sequestration of polydispersed water-soluble lignin moieties by insoluble aggregates. The sequestered moieties were released by treatment with 0.01 M NaOH at 37 °C for 180 min. The redox assay was effective on different types of lignin extracts such as Klason lignin from switchgrass, ionic-liquid derived lignin from Eucalyptus and alkali lignin extracts. The assay generated a distinct profile for each lignin sample that was highly reproducible. The assay was also used to monitor consumption of syringic acid by Sphingobium sp. SYK-6. The simplicity and reproducibility of this assay makes it an excellent and versatile tool for qualitative and semi-quantitative characterization and comparative profiling of aqueous lignin samples.« less

  16. Urinary incontinence - retropubic suspension

    MedlinePlus

    ... Marchetti-Krantz (MMK) procedure; Laparoscopic retropubic colposuspension; Needle suspension; Burch colposuspension ... bladder. There are two ways to do retropubic suspension: open surgery or laparoscopic surgery. Either way, surgery ...

  17. Identification of the mechanism underlying a human chimera by SNP array analysis.

    PubMed

    Shin, So Youn; Yoo, Han-Wook; Lee, Beom Hee; Kim, Kun Suk; Seo, Eul-Ju

    2012-09-01

    Human chimerism resulting from the fusion of two different zygotes is a rare phenomenon. Two mechanisms of chimerism have been hypothesized: dispermic fertilization of an oocyte and its second polar body and dispermic fertilization of two identical gametes from parthenogenetic activation, and these can be identified and discriminated using DNA polymorphism. In the present study we describe a patient with chimerism presenting as a true hermaphrodite and applied single nucleotide polymorphism array analysis to demonstrate dispermic fertilization of two identical gametes from parthenogenetic activation as the underlying mechanism at the whole chromosome level. We suggest that application of genotyping array analysis to the diagnostic process in patients with disorders of sex development will help identify more human chimera patients and increase our understanding of the underlying mechanisms.

  18. ArrayNinja: An Open Source Platform for Unified Planning and Analysis of Microarray Experiments

    PubMed Central

    Dickson, B.M.; Cornett, E.M.; Ramjan, Z.; Rothbart, S.B.

    2017-01-01

    Microarray-based proteomic platforms have emerged as valuable tools for studying various aspects of protein function, particularly in the field of chromatin biochemistry. Microarray technology itself is largely unrestricted in regard to printable material and platform design, and efficient multidimensional optimization of assay parameters requires fluidity in the design and analysis of custom print layouts. This motivates the need for streamlined software infrastructure that facilitates the combined planning and analysis of custom microarray experiments. To this end, we have developed ArrayNinja as a portable, open source, and interactive application that unifies the planning and visualization of microarray experiments and provides maximum flexibility to end users. Array experiments can be planned, stored to a private database, and merged with the imaged results for a level of data interaction and centralization that is not currently attainable with available microarray informatics tools. PMID:27423857

  19. Breath analysis system for early detection of lung diseases based on multi-sensor array

    NASA Astrophysics Data System (ADS)

    Jeon, Jin-Young; Yu, Joon-Boo; Shin, Jeong-Suk; Byun, Hyung-Gi; Lim, Jeong-Ok

    2013-05-01

    Expiratory breath contains various VOCs(Volatile Organic Compounds) produced from the human. When a certain disease exists, the exhalation has specific VOCs which may be generated from diseases. Many researchers have been actively working to find different types of biomarkers which are characteristic for particular diseases. Research regarding the identification of specific diseases from exhalation is still in progress. The aim of this research is to implement early detection of lung disease such as lung cancer and COPD(Chronic Obstructive Pulmonary Disease), which was nominated on the 6th of domestic death rate in 2010, based on multi-sensor array system. The system has been used to acquire sampled expiratory gases data and PCA(Principle Component Analysis) technique was applied to analyze signals from multi-sensor array. Throughout the experimental trials, a clearly distinguishable difference between lung disease patients and healthy controls was found from the measurement and analysis of their respective expiratory gases.

  20. Large Angle Magnetic Suspension Test Fixture

    NASA Technical Reports Server (NTRS)

    Britcher, Colin P.; Huang, Jen-Kuang

    1997-01-01

    Progress in the areas of eddy current computations, modelling and analysis, design optimization methods, wind tunnel Magnetic Suspension and Balance Systems (MSBS), payload pointing and vibration isolation systems, and system identification is reported. Research accomplishments facilitated the demonstration of several new developments in the field of magnetic suspension technology.

  1. HST Solar array impact survey: revised damage laws and residue analysis

    NASA Astrophysics Data System (ADS)

    Drolshagen, G.; Carey, W. C.; McDonnell, J. A. M.; Stevenson, T. J.; Mandeville, J. C.; Berthoud, L.

    1997-05-01

    This report presents results of the analysis of impact features on the retrieved Hubble Space Telescope (HST) solar array and compares them to similar data from EURECA. The post-flight meteroid/debris investigation programmes included optical surveys of all outer surfaces, impact residue analyses and hypervelocity calibration tests on MLI and solar array samples. Observed crater sizes range from about 2 μm to 6-7 mm. On the HST solar array impact fluxes at the same crater pit diameter are higher than for EURECA for sizes exceeding about 200 μm while they are comparable for smaller sizes. Impact fluxes on EURECA and HST do both exceed the 6 face averaged fluxes on LDEF. The residue analyses which were performed for EURECA MLI and HST solar array samples proved very difficult due to the complexity of the targets and they produced somewhat inconclusive results. Some results of hypervelocity impact calibration tests are presented. A comparison between the measured impact data and the predictions of present flux models is given.

  2. Nanochannel Arrays for Molecular Sieving and Electrochemical Analysis by Nanosphere Lithography Templated Graphoepitaxy of Block Copolymers.

    PubMed

    Fu, Kaiyu; Bohn, Paul W

    2017-07-26

    The ability to design, fabricate, and manipulate materials at the nanoscale is fundamental to the quest to develop technologies to assemble nanometer-scale pieces into larger-scale components and materials, thereby transferring unique nanometer-scale properties to macroscopic objects. In this work, we describe a new approach to the fabrication of highly ordered, ultrahigh density nanochannel arrays that employs nanosphere lithography to template the graphoepitaxy of polystyrene-polydimethylsiloxane, diblock copolymers. By optimizing the well-controlled solvent vapor annealing, overcoating conditions, and the subsequent reactive ion etching processes, silica nanochannel (SNC) arrays with areal densities, ρA, approaching 1000 elements μm(-2), are obtained over macroscopic scales. The integrity and functionality of the SNC arrays was tested by using them as permselective ion barriers to nanopore-confined disk electrodes. The nanochannels allow cations to pass to the disk electrode but reject anions, as demonstrated by cyclic voltammetry. This ion gating behavior can be reversed from cation-permselective to anion-permselective by chemically inverting the surface charge from negative to positive. Furthermore, the conformal SNC array structures obtained could easily be lifted, detached, and transferred to another substrate, preserving the hierarchical organization while transferring the nanostructure-derived properties to a different substrate. These results demonstrate how nanoscale behavior can be replicated over macroscale distances, using electrochemical analysis as a model.

  3. Stability Analysis of Roughness Array Wake in a High-Speed Boundary Layer

    NASA Technical Reports Server (NTRS)

    Choudhari, Meelan; Li, Fei; Edwards, Jack

    2009-01-01

    Computations are performed to examine the effects of both an isolated and spanwise periodic array of trip elements on a high-speed laminar boundary layer, so as to identify the potential physical mechanisms underlying an earlier transition to turbulence as a result of the trip(s). In the context of a 0.333 scale model of the Hyper-X forebody configuration, the time accurate solution for an array of ramp shaped trips asymptotes to a stationary field at large times, indicating the likely absence of a strong absolute instability in the mildly separated flow due to the trips. A prominent feature of the wake flow behind the trip array corresponds to streamwise streaks that are further amplified in passing through the compression corner. Stability analysis of the streaks using a spatial, 2D eigenvalue approach reveals the potential for a strong convective instability that might explain the earlier onset of turbulence within the array wake. The dominant modes of streak instability are primarily sustained by the spanwise gradients associated with the streaks and lead to integrated logarithmic amplification factors (N factors) approaching 7 over the first ramp of the scaled Hyper-X forebody, and substantially higher over the second ramp. Additional computations are presented to shed further light on the effects of both trip geometry and the presence of a compression corner on the evolution of the streaks.

  4. A blueprint for computational analysis of acoustical scattering from orchestral panel arrays

    NASA Astrophysics Data System (ADS)

    Burns, Thomas

    2005-09-01

    Orchestral panel arrays have been a topic of interest to acousticians, and it is reasonable to expect optimal design criteria to result from a combination of musician surveys, on-stage empirical data, and computational modeling of various configurations. Preparing a musicians survey to identify specific mechanisms of perception and sound quality is best suited for a clinically experienced hearing scientist. Measuring acoustical scattering from a panel array and discerning the effects from various boundaries is best suited for the experienced researcher in engineering acoustics. Analyzing a numerical model of the panel arrays is best suited for the tools typically used in computational engineering analysis. Toward this end, a streamlined process will be described using PROENGINEER to define a panel array geometry in 3-D, a commercial mesher to numerically discretize this geometry, SYSNOISE to solve the associated boundary element integral equations, and MATLAB to visualize the results. The model was run (background priority) on an SGI Altix (Linux) server with 12 CPUs, 24 Gbytes of RAM, and 1 Tbyte of disk space. These computational resources are available to research teams interested in this topic and willing to write and pursue grants.

  5. An Introduction to MAMA (Meta-Analysis of MicroArray data) System.

    PubMed

    Zhang, Zhe; Fenstermacher, David

    2005-01-01

    Analyzing microarray data across multiple experiments has been proven advantageous. To support this kind of analysis, we are developing a software system called MAMA (Meta-Analysis of MicroArray data). MAMA utilizes a client-server architecture with a relational database on the server-side for the storage of microarray datasets collected from various resources. The client-side is an application running on the end user's computer that allows the user to manipulate microarray data and analytical results locally. MAMA implementation will integrate several analytical methods, including meta-analysis within an open-source framework offering other developers the flexibility to plug in additional statistical algorithms.

  6. Analysis and comparison of two two-dimensional Halbach permanent magnet arrays for magnetically levitated planar motor

    NASA Astrophysics Data System (ADS)

    Zhang, Lu; Kou, Baoquan; Xing, Feng; Zhang, He

    2014-05-01

    A novel 2-D Halbach permanent magnet array which can be used in magnetically levitated planar motor is proposed in this paper. The air-gap flux density distribution of the novel 2-D Halbach permanent magnet array is solved by the scalar magnetic potential equation. In order to compare with the well-known Halbach magnet array that was used by Jansen et al. [IEEE Trans. Ind. Appl. 44(4), 1108 (2008)], harmonic analysis of the x- and z- component of the air-gap flux density are carried out by Fourier decomposition. Comparison of Bx and Bz between the two 2-D Halbach magnet arrays are made. And it is verified that the performance of the new Halbach magnet array is superior to the existing Halbach magnet arrays, its higher magnetic flux density and lower high-order harmonics will help to improve the performance of the magnetically levitated planar motor.

  7. Beyond Behavior: Multilevel Analysis of the Influence of Sociodemographics and School Characteristics on Students' Risk of Suspension

    ERIC Educational Resources Information Center

    Sullivan, Amanda L.; Klingbeil, David A.; Van Norman, Ethan R.

    2013-01-01

    Minority disproportionality in school discipline outcomes continues to trouble practitioners and scholars. The purpose of this study was to examine the influence of sociodemographic characteristics and indicators of school policy enactment (e.g., retention rates, special education identification) on students' risk of suspension. The sample…

  8. Beyond Behavior: Multilevel Analysis of the Influence of Sociodemographics and School Characteristics on Students' Risk of Suspension

    ERIC Educational Resources Information Center

    Sullivan, Amanda L.; Klingbeil, David A.; Van Norman, Ethan R.

    2013-01-01

    Minority disproportionality in school discipline outcomes continues to trouble practitioners and scholars. The purpose of this study was to examine the influence of sociodemographic characteristics and indicators of school policy enactment (e.g., retention rates, special education identification) on students' risk of suspension. The sample…

  9. OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging.

    PubMed

    de Raad, Markus; de Rond, Tristan; Rübel, Oliver; Keasling, Jay D; Northen, Trent R; Bowen, Benjamin P

    2017-06-06

    Mass spectrometry imaging (MSI) has primarily been applied in localizing biomolecules within biological matrices. Although well-suited, the application of MSI for comparing thousands of spatially defined spotted samples has been limited. One reason for this is a lack of suitable and accessible data processing tools for the analysis of large arrayed MSI sample sets. The OpenMSI Arrayed Analysis Toolkit (OMAAT) is a software package that addresses the challenges of analyzing spatially defined samples in MSI data sets. OMAAT is written in Python and is integrated with OpenMSI ( http://openmsi.nersc.gov ), a platform for storing, sharing, and analyzing MSI data. By using a web-based python notebook (Jupyter), OMAAT is accessible to anyone without programming experience yet allows experienced users to leverage all features. OMAAT was evaluated by analyzing an MSI data set of a high-throughput glycoside hydrolase activity screen comprising 384 samples arrayed onto a NIMS surface at a 450 μm spacing, decreasing analysis time >100-fold while maintaining robust spot-finding. The utility of OMAAT was demonstrated for screening metabolic activities of different sized soil particles, including hydrolysis of sugars, revealing a pattern of size dependent activities. These results introduce OMAAT as an effective toolkit for analyzing spatially defined samples in MSI. OMAAT runs on all major operating systems, and the source code can be obtained from the following GitHub repository: https://github.com/biorack/omaat .

  10. High-content analysis screening for cell cycle regulators using arrayed synthetic crRNA libraries.

    PubMed

    Strezoska, Žaklina; Perkett, Matthew R; Chou, Eldon T; Maksimova, Elena; Anderson, Emily M; McClelland, Shawn; Kelley, Melissa L; Vermeulen, Annaleen; Smith, Anja van Brabant

    2017-06-10

    The CRISPR-Cas9 system has been utilized for large-scale, loss-of-function screens mainly using lentiviral pooled formats and cell-survival phenotypic assays. Screening in an arrayed format expands the types of phenotypic readouts that can be used to now include high-content, morphology-based assays, and with the recent availability of synthetic crRNA libraries, new studies are emerging. Here, we use a cell cycle reporter cell line to perform an arrayed, synthetic crRNA:tracrRNA screen targeting 169 genes (>600 crRNAs) and used high content analysis (HCA) to identify genes that regulate the cell cycle. Seven parameters were used to classify cells into cell cycle categories and multiple parameters were combined using a new analysis technique to identify hits. Comprehensive hit follow-up experiments included target gene expression analysis, confirmation of DNA insertions/deletions, and validation with orthogonal reagents. Our results show that most hits had three or more independent crRNAs per gene that demonstrated a phenotype with consistent individual parameters, indicating that our screen produced high-confidence hits with low off-target effects and allowed us to identify hits with more subtle phenotypes. The results of our screen demonstrate the power of using arrayed, synthetic crRNAs for functional phenotypic screening using multiparameter HCA assays. Copyright © 2017 The Author(s). Published by Elsevier B.V. All rights reserved.

  11. ASSISTANT: A hybrid expert system for assisting seismologists in the analysis of seismic array performance

    SciTech Connect

    Hiebert-Dodd, K.L.; Walck, M.C.; Elbring, G.J.

    1988-12-01

    This report describes an expert system, ASSISTANT, that is written in Lisp and runs on a Symbolics 3610 but invokes numerical codes written in FORTRAN on a MicroVAX II. It is the result of a project whose purpose was to investigate and develop an expert system that can reduce the amount of the human expert's time required to process sensor data and that can be used to determine a more optimal sensor system. The focus was on the concept of a hybrid expert system. An expert system is a well known technique from the field of artificial intelligence that tries to capture human expertise in computer software. The term hybrid is used to imply the coupling of this technique to direct the more traditional numerical techniques of signal analysis. An exemplary task, the evaluation of seismic array data to determine optimal array configurations for nuclear test ban treaty applications, was selected in order to develop this concept. The array configurations analysis proved to be a very appropriate application and has lead to a powerful concept for an expert system that manages and assists in the parametric analysis of numerical databases. 11 refs., 5 figs.

  12. Detachably assembled microfluidic device for perfusion culture and post-culture analysis of a spheroid array.

    PubMed

    Sakai, Yusuke; Hattori, Koji; Yanagawa, Fumiki; Sugiura, Shinji; Kanamori, Toshiyuki; Nakazawa, Kohji

    2014-07-01

    Microfluidic devices permit perfusion culture of three-dimensional (3D) tissue, mimicking the flow of blood in vascularized 3D tissue in our body. Here, we report a microfluidic device composed of a two-part microfluidic chamber chip and multi-microwell array chip able to be disassembled at the culture endpoint. Within the microfluidic chamber, an array of 3D tissue aggregates (spheroids) can be formed and cultured under perfusion. Subsequently, detailed post-culture analysis of the spheroids collected from the disassembled device can be performed. This device facilitates uniform spheroid formation, growth analysis in a high-throughput format, controlled proliferation via perfusion flow rate, and post-culture analysis of spheroids. We used the device to culture spheroids of human hepatocellular carcinoma (HepG2) cells under two controlled perfusion flow rates. HepG2 spheroids exhibited greater cell growth at higher perfusion flow rates than at lower perfusion flow rates, and exhibited different metabolic activity and mRNA and protein expression under the different flow rate conditions. These results show the potential of perfusion culture to precisely control the culture environment in microfluidic devices. The construction of spheroid array chambers allows multiple culture conditions to be tested simultaneously, with potential applications in toxicity and drug screening. Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Colorimetric sensor arrays for the analysis of beers: a feasibility study.

    PubMed

    Zhang, Chen; Bailey, Daniel P; Suslick, Kenneth S

    2006-07-12

    Eighteen commercial beers have been analyzed in both liquid and gas phases using colorimetric sensor arrays made from selected chemically responsive dyes printed on a hydrophobic membrane. Digital imaging of the dye array before and after exposure to the complex analytes in either the liquid phase or the head-gas provides a color change profile as a unique fingerprint for the specific analyte. The digital data libraries generated were analyzed using statistical and chemometric methods, including principal component analysis (PCA) and hierarchical clustering analysis (HCA). In either liquid- or gas-phase experiments, facile identification of specific beers was achieved using comparison of the color change profiles; using HCA statistical analysis the error rate of identification was <3%. Differentiation between even very similar beers proved to be straightforward. In addition, differentiation of pristine beer from the effects of watering or decarbonation proved to be possible. These results suggest that colorimetric sensor arrays may prove to be useful for quality assurance/quality control applications of beers and perhaps other beverages.

  14. The performance analysis of sonar target tracking based on pressure hydrophone arrays

    NASA Astrophysics Data System (ADS)

    Chen, Zhe; Liu, Qijun; Li, Zhizhong

    2017-06-01

    For the linear array sonar that consists of pressure hydrophones, it is difficult to solve the problem of port/starboard ambiguity. To estimate the target’s real azimuth accurately, the conventional beam forming methods of different arrays which include linear array, arc array, cross array and Y-shaped array were analysed. Based on the port/starboard discrimination ability and beam width, the sonar target tracking performance of different arrays was compared. It is shown that all arrays except the linear array could discriminate the real target, and the arc array’s effect is the best.

  15. SNP Arrays

    PubMed Central

    Louhelainen, Jari

    2016-01-01

    The papers published in this Special Issue “SNP arrays” (Single Nucleotide Polymorphism Arrays) focus on several perspectives associated with arrays of this type. The range of papers vary from a case report to reviews, thereby targeting wider audiences working in this field. The research focus of SNP arrays is often human cancers but this Issue expands that focus to include areas such as rare conditions, animal breeding and bioinformatics tools. Given the limited scope, the spectrum of papers is nothing short of remarkable and even from a technical point of view these papers will contribute to the field at a general level. Three of the papers published in this Special Issue focus on the use of various SNP array approaches in the analysis of three different cancer types. Two of the papers concentrate on two very different rare conditions, applying the SNP arrays slightly differently. Finally, two other papers evaluate the use of the SNP arrays in the context of genetic analysis of livestock. The findings reported in these papers help to close gaps in the current literature and also to give guidelines for future applications of SNP arrays. PMID:27792140

  16. Analysis of Waves in the Near-Field of Wave Energy Converter Arrays through Stereo Video

    NASA Astrophysics Data System (ADS)

    Black, C.; Haller, M. C.

    2013-12-01

    Oregon State University conducted a series of laboratory experiments to measure and quantify the near-field wave effects caused within arrays of 3 and 5 Wave Energy Converters (WEC). As the waves and WECs interact, significant scattering and radiation occurs increasing/decreasing the wave heights as well as changing the direction the wave is traveling. These effects may vary based on the number of WECs within an array and their respective locations. The findings of this analysis will assist in selecting the WEC farm location and in improving WEC design. Analyzing the near-field waves will help determine the relative importance of absorption, scattering, and radiation as a function of the incident wave conditions and device performance. The WEC mooring system design specifications may also be impacted if the wave heights in the near-field are greater than expected. It is imperative to fully understand the near-field waves before full-scale WEC farms can be installed. Columbia Power Technologies' Manta served as the test WEC prototype on a 1 to 33 scale. Twenty-three wave gages measured the wave heights in both regular and real sea conditions at locations surrounding and within the WEC arrays. While these gages give a good overall picture of the water elevation behavior, it is difficult to resolve the complicated wave field within the WEC array using point gages. Here stereo video techniques are applied to extract the 3D water surface elevations at high resolution in order to reconstruct the multi-directional wave field in the near-field of the WEC array. The video derived wave information will also be compared against the wave gage data.

  17. Analysis and design of coupled-oscillator arrays for microwave systems

    NASA Astrophysics Data System (ADS)

    Moussounda, Renaud

    The concept of synchronized nonlinear coupled oscillators is applied to microwave and antenna engineering for the analysis and design of wireless communication and sensing systems operating at the microwave and/or millimeter (mm)-wave frequencies. The significance of such approach is justified from the potential gain in efficiency, weight, cost and functionality although technical challenges stand in the way. Unlike typical phased array systems, which are currently used to construct such systems, coupled-oscillator systems present additional challenges that mainly arise from maintaining stability and synchronization as the the coupled nonlinear system is operated. Linear systems do not present such stability issues and are consequently faster since they do not rely on any gradual synchronization mechanism in order to function. However, at significantly higher frequencies in the quasi-optical domain, coupled-oscillator systems can make up for the speed difference and present significant efficiency advantages over typical phased array architectures. In addition, coupled nonlinear systems possess inherent analog properties that can be used for a multitude of functions. This dissertation advances the topic of coupled-oscillator arrays by 1) developing an alternative set of techniques for designing the oscillating unit cells called active integrated antennas (AIAs) at microwave or mm-wave frequencies, 2) developing a more accurate description of the dynamics of the array, 3) developing and implementing a new topology for a coupling network that is able to extend stability, 4) implementing a fully non-reciprocally coupled array able to produce large scan angle without loss of stability, 5) proposing an architecture based on a single phase-locked loop (PLL) and containing a self-calibration mechanism, and finally 6) implementing a phase-boosting mechanism using simple circuits to amplify the phase difference between adjacent radiating antennas in order to increase

  18. Multiple seismic array analysis of low frequency tremors in western Shikoku, Japan

    NASA Astrophysics Data System (ADS)

    Ueno, T.; Maeda, T.; Obara, K.; Asano, Y.; Takeda, T.

    2007-12-01

    In southwest Japan, low frequency tremors (LFTs) have been detected at deeper part of the seismogenic zone on the subducting Philippine Sea plate interface by high sensitivity seismograph network Hi-net operated by NIED. The tremor source area migrates during each episode along the strike of the subducting plate with a migration velocity of roughly 10 km/day, which was referred from source locations obtained by the envelope correlation method. In order to investigate the wave field propagation from the tremors in detail, we carried out a seismic observation campaign in western Shikoku, where the active tremor associated with the short-term slow slip event occurs with a recurrence interval of around six months. In this campaign, we deployed three seismic arrays above the belt-like LFT area with a spacing of about 20 km among arrays, during the period from February to May in 2007 because we anticipated the coming LFT episode to occur on March or April, 2007. Each array was composed of 32-channel receivers which mainly consist of vertical-component with natural frequency of 2 Hz. The receivers were placed with an average spacing of 30 m. Waveform data were recorded continuously with a sampling interval of 0.01 s. Since the active tremor episode with the short-term slow slip event occurred from 13 to 15 on March 2007 as expected, we performed frequency-wave number power spectrum analysis for each array recordings by the MUltiple SIgnal Classification (MUSIC) method in the period. At two seismic arrays, the apparent slowness were continuously low during the tremor episode. At the other array, the slowness was relatively high, and the arrival direction of the waves slightly changed with increasing time. In order to ascertain the change to be migration of the tremors, we located the sources of tremors by grid search method by using backazimuth and apparent slowness estimated at each array. We successfully located the sources of tremors, and detected the migration of the

  19. A cesium iodide (thallium)-photodiode array for remote geochemical analysis

    NASA Astrophysics Data System (ADS)

    Evans, Robert James

    To improve our understanding of the mechanism of the formation of the Solar System, information is needed on the global chemical composition of the planets outside of the Earth-Moon system. Thus, the measurement of the chemical composition of Mars and Mercury is a high priority for both the ESA and NASA space programmes. Remote geochemical analysis (RGA), by neutron activation gamma-ray spectroscopy, is a proven technique for remotely mapping the chemical composition of a planet with a thin or no atmosphere and as a result future missions to other terrestrial planets will probably include a gamma-ray spectrometer. The spectrometer must have sufficient sensitivity to resolve the most important emission fines radiating from the planet, whilst remaining within the mass, power and budget limitations of the mission specification. Therefore, there is a requirement for a spectrometer that will provide sufficient sensitivity, to determine the ratio's of elements such as Fe, O, Si and the naturally occurring radionucides K, U and Th, without incurring the high costs of a cooled HPGe detector. This work considers the factors that will determine the sensitivity of a scintillator gamma-ray spectrometer for RGA and demonstrates that a 61 element, pixelated, CsI(Tl)-phtodiode array will have a greater sensitivity than an, equivalent mass, NaI(Tl)-PMT or BGO-PMT detector. This is a result of the high mass ratio of sensitive material in the CsI(Tl)-photodiode array and the improved energy resolution, when compared to a NaI(Tl)-PMT detector, at energies above 2MeV. A prototype 7-element array has been designed, constructed and, tested at energies up to 4.44MeV, to demonstrate the potential performance of a larger 61-element array. The energy resolution of the 7 element array was found to be 2.93% FWHM at 4.44MeV, when operating in simple summation mode, which compares to 3.5% FWHM for a 2' NaI(Tl)-PMT detector. Consideration is also given to the different methods of spectral

  20. Earthquake Response of Suspension Bridges

    NASA Astrophysics Data System (ADS)

    Erdik, Mustafa; Apaydın, Nurdan

    Suspension bridges represent critical nodes of major transportation systems. Bridge failure during strong earthquakes poses not only a threat of fatalities but causes a substantial interruption of emergency efforts. Although wind induced vibrations have historically been the primary concern in the design of suspension bridges, earthquake effects have also gained importance in recent decades. This study involves ambient vibration testing and sophisticated three-dimensional dynamic finite element analysis and earthquake performance assessment of Fatih Sultan Mehmet and suspension Boğaziçi bridges in Istanbul under earthquake excitation. Nonlinear time history analysis of 3D finite-element models of Fatih Sultan Mehmet and Boğaziçi suspension bridges included initial stresses in the cables, suspenders, and towers in equilibrium under dead load conditions. Multi-support scenario earthquake excitation was applied to the structure. Suspension bridges are complex 3-D structures that can exhibit a large number of closely spaced coupled modes of vibration. The large number of closely spaced modes, spatially different ground motion characteristics, and the potential for nonlinear behaviour complicate the seismic response of suspension bridges. Spatial variation of ground motion exhibits itself with different ground motions at supports due to the wave passage, incoherence and local site effects. The source of nonlinear behaviour is due to geometric nonlinearity and the presence of cables that can only carry tensile forces. The natural frequencies of vibration and the corresponding mode shapes in their dead load and live load configurations are determined. Displacement time histories and stresses at critical points of the bridges are computed and their earthquake performance under the action of scenario earthquake are estimated.

  1. Microfluidic Single Cell Array Cytometry for the Analysis of Tumour Apoptosis

    PubMed Central

    Wlodkowic, Donald; Faley, Shannon; Zagnoni, Michele; Wikswo, John P.; Cooper, Jonathan M.

    2013-01-01

    Limitations imposed by conventional analytical technologies for cell biology, such as flow cytometry or microplate imaging, are often prohibitive for the kinetic analysis of single-cell responses to therapeutic compounds. In this paper, we describe the application of a microfluidic array to the real-time screening of anti-cancer drugs against arrays of single cells. The microfluidic platform comprises an array of micromechanical traps, designed to passively corral individual non-adherent cells. This platform, fabricated in the biologically compatible elastomer poly(dimethylsiloxane), PDMS, enables hydrodynamic trapping of cells in low shear stress zones, enabling time-lapse studies of non-adherent hematopoietic cells. Results indicate that these live-cell, microfluidic microarrays can be readily applied to kinetic analysis of investigational anti-cancer agents in hematopoietic cancer cells, providing new opportunities for automated microarray cytometry and higher-throughput screening. We also demonstrate the ability to quantify on-chip the anti-cancer drug induced apoptosis. Specifically, we show that with small numbers of trapped cells (~300) under careful serial observation we can achieve results with only slightly greater statistical spread than can be obtained with single-pass flow cytometer measurements of 15,000 – 30,000 cells. PMID:19514700

  2. A differential array of metalated synthetic receptors for the analysis of tripeptide mixtures.

    PubMed

    Wright, Aaron T; Anslyn, Eric V; McDevitt, John T

    2005-12-14

    A novel library of resin-bound receptors within a cross-reactive differential array for the identification and discrimination of tripeptides and tripeptide mixtures is reported. Pattern recognition using principal component analysis showed complete discrimination of four similar tripeptides and three tripeptide mixtures. The library is comprised of a Cu(II)-centered core with two proximally appended tripeptide arms emanating outward. One tripeptide arm was prepared using combinatorial chemistry to generate the differential nature of the library. Thirty resin-bound receptors were randomly selected from the library and placed within a silicon microchip array that included integrated microfluidics elements, and an indicator-uptake assay was used for colorimetric signaling. The indicator Orange G yielded an accurate measure of the degree of association between receptors and analytes as determined by kinetic analysis of the indicator-uptake assays. Within this paper we detail the method used for differential sensing using a novel receptor library. This work further demonstrates the power and utility of a differential array of synthetic receptors for identification and discrimination of complex bioanalytes.

  3. Design and test analysis of a solar array root hinge drive assembly

    NASA Astrophysics Data System (ADS)

    Ding, Xilun; Li, Xin

    2014-09-01

    A root hinge drive assembly is preferred in place of the classical viscous damper in a large solar array system. It has advantages including better deployment control and higher reliability. But the traditional single degree of freedom model should be improved. A multiple degrees of freedom dynamics model is presented for the solar arrays deployment to guide the drive assembly design. The established model includes the functions of the torsion springs, the synchronization mechanism and the lock-up impact. A numerical computation method is proposed to solve the dynamics coupling problem. Then considering the drive torque requirement calculated by the proposed model, a root hinge drive assembly is developed based on the reliability engineering design methods, and dual actuators are used as a redundancy design. Pseudo-efficiency is introduced and the major factors influencing the (pseudo-) efficiency of the gear mechanism designed with high reduction ratio are studied for further test data analysis. A ground prototype deployment test is conducted to verify the capacity of the drive assembly. The test device consists of a large-area solar array system and a root hinge drive assembly. The RHDA development time is about 43 s. The theoretical drive torque is compared with the test values which are obtained according to the current data and the reduction efficiency analysis, and the results show that the presented model and the calibration methods are proper enough.

  4. Breath analysis system based on phase-shifting interferometric microscopy readout of microcantilever arrays.

    PubMed

    Kelling, S; Huang, J; Capener, M J; Elliott, S R

    2011-09-01

    Microcantilever (MC) sensors can provide ultrasensitive bio-chemical detection. Monitoring the bending response of large arrays of MC sensors coated with a library of receptors will produce a characteristic 'breath-print' corresponding to the breath composition; this promises to be suitable for non-invasive medical diagnostics. While MC arrays with hundreds of individual sensors can be produced readily, conventional MC readout methods are not suitable for the parallel readout of tens or hundreds of individual sensors. We have developed a MC sensor-array readout method based on phase-shifting interferometric microscopy (PSIM) which allows for the simultaneous monitoring of the response of all MCs within the field of view of the readout microscope optics. Based on this sensor technology, we have built an exhaled breath-analysis research instrument for the Point of Care Diagnostics Development Unit at the University of Leicester, UK. In this paper, we describe the PSIM readout system and the breath-analysis instrument that will be used to test sensor surface coatings and develop sensor sets with response patterns suitable for clear correlation to patients' health condition.

  5. Interfacing Inorganic Nanowire Arrays and Living Cells for Cellular Function Analysis.

    PubMed

    Kwak, Minsuk; Han, Lin; Chen, Jonathan J; Fan, Rong

    2015-11-11

    Inorganic nanowires are among the most attractive functional materials, which have emerged in the past two decades. They have demonstrated applications in information technology and energy conversion, but their utility in biological or biomedical research remains relatively under-explored. Although nanowire-based sensors have been frequently reported for biomolecular detection, interfacing nanowire arrays and living mammalian cells for the direct analysis of cellular functions is a very recent endeavor. Cell-penetrating nanowires enabled effective delivery of biomolecules, electrical and optical stimulation and recording of intracellular signals over a long period of time. Non-penetrating, high-density nanowire arrays display rich interactions between the nanostructured substrate and the micro/nanoscale features of cell surfaces. Such interactions enable efficient capture of rare cells including circulating tumor cells and trafficking leukocytes from complex biospecimens. It also serves as a platform for probing cell traction force and neuronal guidance. The most recent advances in the field that exploits nanowire arrays (both penetrating and non-penetrating) to perform rapid analysis of cellular functions potentially for disease diagnosis and monitoring are reviewed.

  6. Failure mode analysis of silicon-based intracortical microelectrode arrays in non-human primates

    NASA Astrophysics Data System (ADS)

    Barrese, James C.; Rao, Naveen; Paroo, Kaivon; Triebwasser, Corey; Vargas-Irwin, Carlos; Franquemont, Lachlan; Donoghue, John P.

    2013-12-01

    Objective. Brain-computer interfaces (BCIs) using chronically implanted intracortical microelectrode arrays (MEAs) have the potential to restore lost function to people with disabilities if they work reliably for years. Current sensors fail to provide reliably useful signals over extended periods of time for reasons that are not clear. This study reports a comprehensive retrospective analysis from a large set of implants of a single type of intracortical MEA in a single species, with a common set of measures in order to evaluate failure modes. Approach. Since 1996, 78 silicon MEAs were implanted in 27 monkeys (Macaca mulatta). We used two approaches to find reasons for sensor failure. First, we classified the time course leading up to complete recording failure as acute (abrupt) or chronic (progressive). Second, we evaluated the quality of electrode recordings over time based on signal features and electrode impedance. Failure modes were divided into four categories: biological, material, mechanical, and unknown. Main results. Recording duration ranged from 0 to 2104 days (5.75 years), with a mean of 387 days and a median of 182 days (n = 78). Sixty-two arrays failed completely with a mean time to failure of 332 days (median = 133 days) while nine array experiments were electively terminated for experimental reasons (mean = 486 days). Seven remained active at the close of this study (mean = 753 days). Most failures (56%) occurred within a year of implantation, with acute mechanical failures the most common class (48%), largely because of connector issues (83%). Among grossly observable biological failures (24%), a progressive meningeal reaction that separated the array from the parenchyma was most prevalent (14.5%). In the absence of acute interruptions, electrode recordings showed a slow progressive decline in spike amplitude, noise amplitude, and number of viable channels that predicts complete signal loss by about eight years. Impedance measurements showed

  7. Teleseismic P-wave polarization analysis at the Gräfenberg array

    NASA Astrophysics Data System (ADS)

    Cristiano, L.; Meier, T.; Krüger, F.; Keers, H.; Weidle, C.

    2016-12-01

    P-wave polarization at the Gräfenberg array (GRF) in southern Germany is analysed in terms of azimuthal deviations and deviations in the vertical polarization using 20 yr of broad-band recordings. An automated procedure for estimating P-wave polarization parameters is suggested, based on the definition of a characteristic function, which evaluates the polarization angles and their time variability as well as the amplitude, linearity and the signal-to-noise ratio of the P wave. P-wave polarization at the GRF array is shown to depend mainly on frequency and backazimuth and only slightly on epicentral distance indicating depth-dependent local anisotropy and lateral heterogeneity. A harmonic analysis is applied to the azimuthal anomalies to analyse their periodicity as a function of backazimuth. The dominant periods are 180° and 360°. At low frequencies, between 0.03 and 0.1 Hz, the observed fast directions of azimuthal anisotropy inferred from the 180° periodicity are similar across the array. The average fast direction of azimuthal anisotropy at these frequencies is N20°E with an uncertainty of about 8° and is consistent with fast directions of Pn-wave propagation. Lateral velocity gradients determined for the low-frequency band are compatible with the Moho topography of the area. A more complex pattern in the horizontal fast axis orientation beneath the GRF array is observed in the high-frequency band between 0.1 and 0.5 Hz, and is attributed to anisotropy in the upper crust. A remarkable rotation of the horizontal fast axis orientation across the suture between the geological units Moldanubicum and Saxothuringicum is observed. In contrast, the 360° periodicity at high frequencies is rather consistent across the array and may either point to lower velocities in the upper crust towards the Bohemian Massif and/or to anisotropy dipping predominantly in the NE-SW direction. Altogether, P-wave polarization analysis indicates the presence of layered lithospheric

  8. Failure mode analysis of silicon-based intracortical microelectrode arrays in non-human primates.

    PubMed

    Barrese, James C; Rao, Naveen; Paroo, Kaivon; Triebwasser, Corey; Vargas-Irwin, Carlos; Franquemont, Lachlan; Donoghue, John P

    2013-12-01

    Brain-computer interfaces (BCIs) using chronically implanted intracortical microelectrode arrays (MEAs) have the potential to restore lost function to people with disabilities if they work reliably for years. Current sensors fail to provide reliably useful signals over extended periods of time for reasons that are not clear. This study reports a comprehensive retrospective analysis from a large set of implants of a single type of intracortical MEA in a single species, with a common set of measures in order to evaluate failure modes. Since 1996, 78 silicon MEAs were implanted in 27 monkeys (Macaca mulatta). We used two approaches to find reasons for sensor failure. First, we classified the time course leading up to complete recording failure as acute (abrupt) or chronic (progressive). Second, we evaluated the quality of electrode recordings over time based on signal features and electrode impedance. Failure modes were divided into four categories: biological, material, mechanical, and unknown. Recording duration ranged from 0 to 2104 days (5.75 years), with a mean of 387 days and a median of 182 days (n = 78). Sixty-two arrays failed completely with a mean time to failure of 332 days (median = 133 days) while nine array experiments were electively terminated for experimental reasons (mean = 486 days). Seven remained active at the close of this study (mean = 753 days). Most failures (56%) occurred within a year of implantation, with acute mechanical failures the most common class (48%), largely because of connector issues (83%). Among grossly observable biological failures (24%), a progressive meningeal reaction that separated the array from the parenchyma was most prevalent (14.5%). In the absence of acute interruptions, electrode recordings showed a slow progressive decline in spike amplitude, noise amplitude, and number of viable channels that predicts complete signal loss by about eight years. Impedance measurements showed systematic early increases, which did

  9. Analysis of an industrial production suspension of Bacillus lentus subtilisin crystals by powder diffraction: a powerful quality-control tool.

    PubMed

    Frankaer, Christian G; Moroz, Olga V; Turkenburg, Johan P; Aspmo, Stein I; Thymark, Majbritt; Friis, Esben P; Stahl, Kenny; Nielsen, Jens E; Wilson, Keith S; Harris, Pernille

    2014-04-01

    A microcrystalline suspension of Bacillus lentus subtilisin (Savinase) produced during industrial large-scale production was analysed by X-ray powder diffraction (XRPD) and X-ray single-crystal diffraction (MX). XRPD established that the bulk microcrystal sample representative of the entire production suspension corresponded to space group P212121, with unit-cell parameters a = 47.65, b = 62.43, c = 75.74 Å, equivalent to those for a known orthorhombic crystal form (PDB entry 1ndq). MX using synchrotron beamlines at the Diamond Light Source with beam dimensions of 20 × 20 µm was subsequently used to study the largest crystals present in the suspension, with diffraction data being collected from two single crystals (∼20 × 20 × 60 µm) to resolutions of 1.40 and 1.57 Å, respectively. Both structures also belonged to space group P2(1)2(1)2(1), but were quite distinct from the dominant form identified by XRPD, with unit-cell parameters a = 53.04, b = 57.55, c = 71.37 Å and a = 52.72, b = 57.13, c = 65.86 Å, respectively, and refined to R = 10.8% and Rfree = 15.5% and to R = 14.1% and Rfree = 18.0%, respectively. They are also different from any of the forms previously reported in the PDB. A controlled crystallization experiment with a highly purified Savinase sample allowed the growth of single crystals of the form identified by XRPD; their structure was solved and refined to a resolution of 1.17 Å with an R of 9.2% and an Rfree of 11.8%. Thus, there are at least three polymorphs present in the production suspension, albeit with the 1ndq-like microcrystals predominating. It is shown how the two techniques can provide invaluable and complementary information for such a production suspension and it is proposed that XRPD provides an excellent quality-control tool for such suspensions.

  10. On the thermoelastic analysis of solar cell arrays and related material properties

    NASA Technical Reports Server (NTRS)

    Salama, M. A.; Bouquet, F. L.

    1976-01-01

    Accurate prediction of failure of solar cell arrays requires accuracy in the computation of thermally induced stresses. This was accomplished by using the finite element technique. Improved procedures for stress calculation were introduced together with failure criteria capable of describing a wide range of ductile and brittle material behavior. The stress distribution and associated failure mechanisms in the N-interconnect junction of two solar cell designs were then studied. In such stress and failure analysis, it is essential to know the thermomechanical properties of the materials involved. Measurements were made of properties of materials suitable for the design of lightweight arrays: microsheet-0211 glass material for the solar cell filter, and Kapton-H, Kapton F, Teflon, Tedlar, and Mica Ply PG-402 for lightweight substrates. The temperature-dependence of the thermal coefficient of expansion for these materials was determined together with other properties such as the elastic moduli, Poisson's ratio, and the stress-strain behavior up to failure.

  11. Clinical utility of an array comparative genomic hybridization analysis for Williams syndrome.

    PubMed

    Yagihashi, Tatsuhiko; Torii, Chiharu; Takahashi, Reiko; Omori, Mikimasa; Kosaki, Rika; Yoshihashi, Hiroshi; Ihara, Masahiro; Minagawa-Kawai, Yasuyo; Yamamoto, Junichi; Takahashi, Takao; Kosaki, Kenjiro

    2014-11-01

    To reveal the relation between intellectual disability and the deleted intervals in Williams syndrome, we performed an array comparative genomic hybridization analysis and standardized developmental testing for 11 patients diagnosed as having Williams syndrome based on fluorescent in situ hybridization testing. One patient had a large 4.2-Mb deletion spanning distally beyond the common 1.5-Mb intervals observed in 10/11 patients. We formulated a linear equation describing the developmental age of the 10 patients with the common deletion; the developmental age of the patient with the 4.2-Mb deletion was significantly below the expectation (developmental age = 0.51 × chronological age). The large deletion may account for the severe intellectual disability; therefore, the use of array comparative genomic hybridization may provide practical information regarding individuals with Williams syndrome. © 2014 Japanese Teratology Society.

  12. New materials and multidimensional cluster analysis for SAW chemical sensor arrays

    SciTech Connect

    Ricco, A.J.; Osbourn, G.C.; Bartholomew, J.W.; Crooks, R.M.; Chuanjing, Xu; Allred, R.E.

    1994-05-01

    We use six-element arrays of 97-MHz ST-quartz surface acoustic wave (SAW) devices to detect changes in thin-film mass and mechanical properties resulting from sorption of analytes by films representing two new classes of chemical sensor interface: self-assembled monolayers (SAMs) and plasma-grafted films (PGFs). While these materials do not display exceptional chemical selectivity, various combinations of the 7 different SAMs and 8 PGFs examined to produce distinct response patterns for each of 13 analytes. The analytes include aliphatic, aromatic, and chlorinated hydrocarbons; alcohols; ketones; organophosphonates; and water. Evaluation of the SAW array data using multidimensional cluster analysis techniques show that each chemical species can be correctly identified 100% of the time over the 9%- to 49%-of-saturation range using data from many combinations of four or more films.

  13. Application of neural networks to digital pulse shape analysis for an array of silicon strip detectors

    NASA Astrophysics Data System (ADS)

    Flores, J. L.; Martel, I.; Jiménez, R.; Galán, J.; Salmerón, P.

    2016-09-01

    The new generation of nuclear physics detectors that used to study nuclear reactions is considering the use of digital pulse shape analysis techniques (DPSA) to obtain the (A,Z) values of the reaction products impinging in solid state detectors. This technique can be an important tool for selecting the relevant reaction channels at the HYDE (HYbrid DEtector ball array) silicon array foreseen for the Low Energy Branch of the FAIR facility (Darmstadt, Germany). In this work we study the feasibility of using artificial neural networks (ANNs) for particle identification with silicon detectors. Multilayer Perceptron networks were trained and tested with recent experimental data, showing excellent identification capabilities with signals of several isotopes ranging from 12C up to 84Kr, yielding higher discrimination rates than any other previously reported.

  14. Marek's disease virus-induced immunosuppression: array analysis of chicken immune response gene expression profiling.

    PubMed

    Heidari, Mohammad; Sarson, Aimie J; Huebner, Marianne; Sharif, Shayan; Kireev, Dmitry; Zhou, Huaijun

    2010-06-01

    Marek's disease (MD) is a lymphoproliferative disease of chickens induced by a highly cell-associated oncogenic alpha-herpesvirus, Marek's disease virus (MDV). MDV replicates in chicken lymphocytes and establishes a latency infection within CD4(+) T cells. Host-virus interaction, immune responses to infection, and transcriptional profiling of chicken gene expression in MD are poorly understood. In this study we conducted a global host gene expression analysis in the splenocytes of MDV-infected chickens using oligonucleotide-based Affymetrix GeneChip Chicken Genome Arrays. These arrays contain probes for more than 32,000 chicken transcripts and most of the known MDV genes and open reading frames. Two-week-old MD-susceptible chickens were inoculated with an oncogenic strain of MDV, and spleen samples were collected 5 and 15 days post-infection (dpi) for RNA isolation and microarray analysis. Array results displayed a significant differential pattern of immune response transcriptome between the two phases of MDV infection. The expression levels of more than 22 immune-response and related genes were downregulated, while the expression levels of at least 58 genes were increased at 5 dpi (cytolytic infection), compared to age-matched control birds. In comparison, out of 73 immune-response and related genes, 67 genes were downregulated, with only 6 genes having higher expression levels at 15 dpi (latency infection). Cytokines, chemokines, MHC molecules and related receptors, and adhesion molecules were among the many MDV-induced downregulated genes that are critical for an effective antiviral immune response. In addition, several apoptosis-associated genes were decreased in expression during latent infection, suggesting an MDV-induced blocking of initiation or progression of programmed cell death processes. These chicken arrays are valuable tools in understanding the molecular mechanisms behind viral pathogenesis and chicken gene expression patterns, and associated

  15. Magnetic Suspension Technology Development

    NASA Technical Reports Server (NTRS)

    Britcher, Colin

    1998-01-01

    This Cooperative Agreement, intended to support focused research efforts in the area of magnetic suspension systems, was initiated between NASA Langley Research Center (LaRC) and Old Dominion University (ODU) starting January 1, 1997. The original proposal called for a three-year effort, but funding for the second year proved to be unavailable, leading to termination of the agreement following a 5-month no-cost extension. This report covers work completed during the entire 17-month period of the award. This research built on work that had taken place over recent years involving both NASA LARC and the Principal Investigator (PI). The research was of a rather fundamental nature, although specific applications were kept in mind at all times, such as wind tunnel Magnetic Suspension and Balance Systems (MSBS), space payload pointing and vibration isolation systems, magnetic bearings for unconventional applications, magnetically levitated ground transportation and electromagnetic launch systems. Fundamental work was undertaken in areas such as the development of optimized magnetic configurations, analysis and modelling of eddy current effects, control strategies for magnetically levitated wind tunnel models and system calibration procedures. Despite the termination of this Cooperative Agreement, several aspects of the research work are currently continuing with alternative forms of support.

  16. ASTRI SST-2M prototype and mini-array data reconstruction and scientific analysis software in the framework of the Cherenkov Telescope Array

    NASA Astrophysics Data System (ADS)

    Lombardi, Saverio; Antonelli, Lucio A.; Bastieri, Denis; Donnarumma, Imma; Lucarelli, Fabrizio; Madonna, Alberto; Mastropietro, Michele

    2016-07-01

    In the framework of the international Cherenkov Telescope Array (CTA) gamma-ray observatory, the Italian National Institute for Astrophysics (INAF) is developing a dual-mirror, small-sized, end-to-end prototype (ASTRI SST-2M), inaugurated on September 2014 at Mt. Etna (Italy), and a mini-array composed of nine ASTRI telescopes, proposed to be installed at the southern CTA site. The ASTRI mini-array is a collaborative effort led by INAF and carried out by institutes from Italy, Brazil, and South-Africa. The project is also including the full data handling chain from raw data up to final scientific products. To this end, a dedicated software for the online/ on-site/off-site data reconstruction and scientific analysis is under development for both the ASTRI SST-2M prototype and mini-array. The software is designed following a modular approach in which each single component and the entire pipeline are developed in compliance with the CTA requirements. Data reduction is conceived to be run on parallel computing architectures, as multi-core CPUs and graphic accelerators (GPUs), and new hardware architectures based on low-power consumption processors (e.g. ARM). The software components are coded in C++/Python/CUDA and wrapped by efficient pipelines written in Python. The final scientific products are then achieved by means of either science tools currently being used in the CTA Consortium (e.g. ctools) or specifically developed ones. In this contribution, we present the framework and the main software components of the ASTRI SST-2M prototype and mini-array data reconstruction and scientific analysis software package, and report the status of its development.

  17. Design and Hemocompatibility Analysis of a Double-Suction Injection Suspension Blood Pump Using Computational Fluid Dynamics Methods.

    PubMed

    Wu, Yue; Zhu, Liangfan; Luo, Yun

    2017-07-26

    The blood pump has become a possible solution to heart diseases. For the prevention of device failure and hemocompatibility problems, a rotary pump with suspended bearing is a preferred solution. In our previous work, a novel injection suspension method has been introduced to levitate the rotor. The suspension method is totally passive. This study aims to apply this suspension method to a double-suction pump, and the property of the pump was investigated using computational fluid dynamics (CFD) methods. The flow field of the pump is simulated based on the SST k-ω turbulent model. The characteristic curves of the pump were calculated. At the nominal working point of 5 L/min, 100 mm Hg, the suspension force acting on the rotor was detected, which could reach 0.46 N with a gap of 150 µm. We compared the pump with a previously developed single-suction injection pump to evaluate the blood compatibility of the double-suction design. The average scalar shear stress values were 3.13 Pa for the double-suction pump and 7.10 Pa for the single-suction pump. Larger volumes in the single-suction pump were exposed to shear stresses higher than 10 Pa. Thresholds for the von Willebrand factor cleavage, platelet activation, and hemolysis were defined to be 9 Pa, 50 Pa, and 150 Pa, respectively. The volume fractions for the double-suction pump are lower for all thresholds. The normalized index of hemolysis (NIH) values for the two pumps were calculated to be 0.008 g/100 L and 0.016 g/100 L. Results proved that the double-suction pump has a better hemocompatibility compared with the single-suction pump. © 2017 International Center for Artificial Organs and Transplantation and Wiley Periodicals, Inc.

  18. Analysis and testing of an integrated semi-active seat suspension for both longitudinal and vertical vibration control

    NASA Astrophysics Data System (ADS)

    Bai, Xian-Xu; Jiang, Peng; Pan, Hui; Qian, Li-Jun

    2016-04-01

    An integrated semi-active seat suspension for both longitudinal and vertical vibration control is analyzed and tested in this paper. The seat suspension consists of a switching mechanism transforming both longitudinal and vertical motions into a rotary motion and a real-time damping-controllable system-a rotary magnetorheological (MR) damper working in pure shear mode and its corresponding control system. The switching mechanism employs the parallelogram frames as a motion guide which keeps the seat moving longitudinally and vertically. At the same time, both longitudinal and vertical motions are transformed into a reciprocating rotary motion that is transmitted to the rotary MR damper after an amplification by a gear mechanism. Both the longitudinal and vertical vibrations can be attenuated in real time through controlling the damping force (or torque) of the rotary MR damper. The mathematical model of the seat suspension system is established, simulated, and analyzed. The experimental test based on the test rig in Hefei University of Technology is implemented, and the results of simulation and experimental test are compared and analyzed.

  19. Nanoparticle tracking analysis of particle size and concentration detection in suspensions of polymer and protein samples: Influence of experimental and data evaluation parameters.

    PubMed

    Gross, Julia; Sayle, Sabrina; Karow, Anne R; Bakowsky, Udo; Garidel, Patrick

    2016-07-01

    Nanoparticle Tracking Analysis (NTA) is an emerging technique for detecting simultaneously sub-micron particle size distributions and particle concentrations of a sample. This study deals with the performance evaluation for the detection and characterisation of various particles by NTA. Our investigation focusses on the NTA measurement parameter set-ups, as will be shown in this study, are very crucial parameters to correctly analyse and interpret the data. In order to achieve this, we used (i) polystyrene standard particles as well as (ii) protein particles. We show the highly precise and reproducible detection of particle size and concentration in monodisperse polystyrene particle systems, under specified and constant parameter settings. On the other hand, our results exemplify potential risks and errors while setting inadequate parameters with regards to the results and thus interpretation thereof. In particular changes of the parameters, camera level (CL) and detection threshold (DT), led to significant changes in the determined particle concentration. We propose defined and specified "optimal" camera levels for monodisperse particle suspension characterisations in the size range of 20-1000nm. We illustrate that the results of polydisperse polystyrene standard particle solution measurements, highly depend on the used parameter settings, which are rarely published with the data. Changes in these settings led to the "appearance" or "disappearance" of particle populations ("peaks") for polydisperse systems. Thus, a correct evaluation of the particle size populations in the sample becomes very challenging. For the use of NTA in biopharmaceutical analysis, proteinaceous samples were investigated. We analysed protein particle suspensions and compared unstressed and stressed (formation of aggregates) protein samples similar to polystyrene particle analysis. We also studied these samples in two different measuring modes (general capture mode and live monitoring mode

  20. The Design and Analysis of Split Row-Column Addressing Array for 2-D Transducer

    PubMed Central

    Li, Xu; Jia, Yanping; Ding, Mingyue; Yuchi, Ming

    2016-01-01

    For 3-D ultrasound imaging, the row-column addressing (RCA) with 2N connections for an N × N 2-D array makes the fabrication and interconnection simpler than the fully addressing with N2 connections. However, RCA degrades the image quality because of defocusing in signal channel direction in the transmit event. To solve this problem, a split row-column addressing scheme (SRCA) is proposed in this paper. Rather than connecting all the elements in the signal channel direction together, this scheme divides the elements in the signal channel direction into several disconnected blocks, thus enables focusing beam access in both signal channel and switch channel directions. Selecting an appropriate split scheme is the key for SRCA to maintaining a reasonable tradeoff between the image quality and the number of connections. Various split schemes for a 32 × 32 array are fully investigated with point spread function (PSF) analysis and imaging simulation. The result shows the split scheme with five blocks (4, 6, 12, 6, and 4 elements of each block) can provide similar image quality to fully addressing. The splitting schemes for different array sizes from 16 × 16 to 96 × 96 are also discussed. PMID:27690029

  1. The Design and Analysis of Split Row-Column Addressing Array for 2-D Transducer.

    PubMed

    Li, Xu; Jia, Yanping; Ding, Mingyue; Yuchi, Ming

    2016-09-27

    For 3-D ultrasound imaging, the row-column addressing (RCA) with 2N connections for an N × N 2-D array makes the fabrication and interconnection simpler than the fully addressing with N² connections. However, RCA degrades the image quality because of defocusing in signal channel direction in the transmit event. To solve this problem, a split row-column addressing scheme (SRCA) is proposed in this paper. Rather than connecting all the elements in the signal channel direction together, this scheme divides the elements in the signal channel direction into several disconnected blocks, thus enables focusing beam access in both signal channel and switch channel directions. Selecting an appropriate split scheme is the key for SRCA to maintaining a reasonable tradeoff between the image quality and the number of connections. Various split schemes for a 32 × 32 array are fully investigated with point spread function (PSF) analysis and imaging simulation. The result shows the split scheme with five blocks (4, 6, 12, 6, and 4 elements of each block) can provide similar image quality to fully addressing. The splitting schemes for different array sizes from 16 × 16 to 96 × 96 are also discussed.

  2. Array painting: a protocol for the rapid analysis of aberrant chromosomes using DNA microarrays

    PubMed Central

    Gribble, Susan M; Ng, Bee Ling; Prigmore, Elena; Fitzgerald, Tomas; Carter, Nigel P

    2012-01-01

    Aarray painting is a technique that uses microarray technology to rapidly map chromosome translocation breakpoints. previous methods to map translocation breakpoints have used fluorescence in situ hybridization (FIsH) and have consequently been labor-intensive, time-consuming and restricted to the low breakpoint resolution imposed by the use of metaphase chromosomes. array painting combines the isolation of derivative chromosomes (chromosomes with translocations) and high-resolution microarray analysis to refine the genomic location of translocation breakpoints in a single experiment. In this protocol, we describe array painting by isolation of derivative chromosomes using a MoFlo flow sorter, amplification of these derivatives using whole-genome amplification and hybridization onto commercially available oligonucleotide microarrays. although the sorting of derivative chromosomes is a specialized procedure requiring sophisticated equipment, the amplification, labeling and hybridization of Dna is straightforward, robust and can be completed within 1 week. the protocol described produces good quality data; however, array painting is equally achievable using any combination of the available alternative methodologies for chromosome isolation, amplification and hybridization. PMID:19893508

  3. Solar array design based on shadow analysis for increasing net energy collection in a competition vehicle

    NASA Astrophysics Data System (ADS)

    Osorio-Gómez, Gilberto; Mejía-Gutiérrez, Ricardo; Suárez-Castañeda, Nicolás; Gil-Herrera, Ana; Barrera-Velásquez, Jorge

    2015-01-01

    Photovoltaic (PV) applications such as in the architectural, automotive, and aerospace industries face design contradictions because they are expected to produce a lot of energy but are constrained by available area, surface shape, incident irradiance, shadows, and other aspects that have a negative influence on the energy produced by the solar panel. Solar competition vehicles are some of these challenging PV applications. The design of such solar arrays needs to consider efficiency evaluation in order to optimize space; it is difficult not to install solar modules in areas impacted by shadows. A design procedure for a solar array configuration based on shadow analysis for competition vehicles is presented. The principle is that shadows in moving objects can be simulated, since the vehicle, the earth and the sun are are moving in semipredictable patterns, thus net energy collection can be forecast. The case study presented is the solar array design of a vehicle that participated in the World Solar Challenge 2013. The obtained results illustrate how the employment of the procedure gives insights on important aspects to consider and also delivers qualitative and quantitative information for decision making. In addition, the experience in competition highlights some issues to be considered, modified, or improved in further vehicle designs.

  4. MIR Solar Array Return Experiment: Power Performance Measurements and Molecular Contamination Analysis Results

    NASA Technical Reports Server (NTRS)

    Visentine, James; Kinard, William; Brinker, David; Scheiman, David; Banks, Bruce; Albyn, Keith; Hornung, Steve; See, Thomas

    2001-01-01

    A solar array segment was recently removed from the Mir core module and returned for ground-based analysis. The segment, which is similar to the ones the Russians have provided for the FGB and Service Modules, was microscopically examined and disassembled by US and Russian science teams. Laboratory analyses have shown the segment to he heavily contaminated by an organic silicone coating, which was converted to an organic silicate film by reactions with atomic oxygen within the. orbital flight environment. The source of the contaminant was a silicone polymer used by the Russians as an adhesive and bonding agent during segment construction. During its life cycle, the array experienced a reduction in power performance from approx. 12%, when it was new and first deployed, to approx. 5%, when it was taken out of service. However, current-voltage measurements of three contaminated cells and three pristine, Russian standard cells have shown that very little degradation in solar array performance was due to the silicate contaminants on the solar cell surfaces. The primary sources of performance degradation is attributed to "thermal hot-spotting" or electrical arcing; orbital debris and micrometeoroid impacts; and possibly to the degradation of the solar cells and interconnects caused by radiation damage from high energy protons and electrons.

  5. Ultrasensitive label-free DNA analysis using an electronic chip based on carbon nanotube nanoelectrode arrays

    NASA Astrophysics Data System (ADS)

    Koehne, Jessica; Chen, Hua; Li, Jun; Cassell, Alan M.; Ye, Qi; Tee Ng, Hou; Han, Jie; Meyyappan, M.

    2003-12-01

    We report the detection of DNA PCR amplicons using an ultrasensitive label-free electronic technique based on multiwalled carbon nanotube (MWNT) nanoelectrode arrays embedded in an SiO2 matrix. Specific PCR amplicons are reliably detected using electrochemical (EC) methods through allele-specific oligonucleotide hybridization. The inherent guanine bases in the DNA amplicon target of {\\sim }300 bases serve as signal moieties with the aid of Ru(bpy)32+ mediators, providing an amplified anodic current associated with the oxidation of guanine groups at the nanoelectrode surface. The reduced size and density of the nanoelectrode array provided by MWNTs dramatically improves the sensitivity of EC detection. In addition, the abundant guanine bases in target DNA produce a large signal. Less than {\\sim } 1000 target amplicons can be detected on a microspot, approaching the sensitivity limit of conventional laser-based fluorescence techniques. This method also eliminates the labelling requirement and makes the measurements much simpler. This platform can be employed for developing highly automated electronic chips with multiplex nanoelectrode arrays for quick DNA analysis.

  6. Enclosed pillar arrays integrated on a fluidic platform for on-chip separations and analysis

    SciTech Connect

    Lavrik, Nickolay V; Taylor, Lisa; Sepaniak, Michael

    2010-01-01

    Due to the difficulty of reliably producing sealed 3-D structures, few researchers have tackled the challenges of creating pillar beds suitable for miniaturized liquid phase separation systems. Herein, we describe an original processing sequence for the fabrication of enclosed pillar arrays integrated on a fluidic chip which, we believe, will further stimulate interest in this field. Our approach yields a mechanically robust enclosed pillar system that withstands mechanical impacts commonly incurred during processing, sealing and operation, resulting in a design particularly suitable for the research environment. A combination of a wafer-level fabrication sequence with chip-level elastomer bonding allows for chip reusability, an attractive and cost efficient advancement for research applications. The characteristic features in the implemented highly ordered pillar arrays are scalable to submicron dimensions. The proposed fluidic structures are suitable for handling picolitre sample volumes and offer prospects for substantial improvements in separation efficiency and permeability over traditional packed and monolithic columns. Our experimental observations indicate plate heights as low as 0.76 {mu}m for a 10 mm long pillar bed. Theoretical calculations confirm that ordered pillar arrays with submicron pore sizes combine superior analysis speed, picolitre sample volumes, high permeability and reasonably large plate numbers on a small footprint. In addition, we describe a fluidic interface that provides streamlined coupling of the fabricated structures with off-chip fluidic components.

  7. [Application of SNP-array technology in the genetic analysis of pediatric patients with growth retardation].

    PubMed

    Luo, Shiyu; Fu, Chunyun; Zhang, Shujie; Wang, Jin; Fan, Xin; Luo, Jingsi; Chen, Rongyu; Hu, Xuyun; Qin, Haisong; Li, Chuan; Ou, Shan; Li, Qifei; Chen, Shaoke

    2017-06-10

    To explore the value of single nucleotide polymorphism array (SNP-array) for the analysis of pediatric patients with growth retardation. One hundred eighty one children with growth retardation were enrolled. DNA was extracted from peripheral samples from the patients, and whole genome copy number variations (CNVs) were detected using Illumina Human Cyto SNP-12. All identified CNVs were further analyzed with reference to databases including ClinGen, ClinVar, DECIPHER, OMIM and DGV as well as comprehensive review of literature from PubMed to determine their pathogenicity. Forty seven patients (26%) with abnormal CNVs were detected, which included 12 known microdeletions/microduplications syndrome (26%), 10 pathogenic non-syndromic CNVs (21%), 3 numerical chromosome aberrations (6%), 3 unbalanced translocations (6%), 4 pathogenic mosaicisms (9%) and 15 cases with unknown clinical significance (32%). After excluding obvious numerical and/or structural chromosomal abnormalities, this study has detected 15 pathogenic microdeletions/microduplications sized 5 Mb or less, which may be missed by routine chromosomal karyotyping. In addition, there were 3 cases with loss of heterozygoisty (LOH) containing known or predicted imprinting genes as well as 2 cases with suspected parental consanguinity. SNP-array technology is a powerful tool for the genetic diagnosis of children with growth disorders with advantages of high resolution and improved accuracy.

  8. Monte Carlo analysis of the enhanced transcranial penetration using distributed near-infrared emitter array.

    PubMed

    Yue, Lan; Humayun, Mark S

    2015-08-01

    Transcranial near-infrared (NIR) treatment of neurological diseases has gained recent momentum. However, the low NIR dose available to the brain, which shows severe scattering and absorption of the photons by human tissues, largely limits its effectiveness in clinical use. Hereby, we propose to take advantage of the strong scattering effect of the cranial tissues by applying an evenly distributed multiunit emitter array on the scalp to enhance the cerebral photon density while maintaining each single emitter operating under the safe thermal limit. By employing the Monte Carlo method, we simulated the transcranial propagation of the array emitted light and demonstrated markedly enhanced intracranial photon flux as well as improved uniformity of the photon distribution. These enhancements are correlated with the source location, density, and wavelength of light. To the best of our knowledge, we present the first systematic analysis of the intracranial light field established by the scalp-applied multisource array and reveal a strategy for the optimization of the therapeutic effects of the NIR radiation.

  9. Data in support of proteomic analysis of pneumococcal pediatric clinical isolates to construct a protein array

    PubMed Central

    Olaya-Abril, Alfonso; Obando, Ignacio; Rodríguez-Ortega, Manuel J.

    2016-01-01

    Surface proteins play key roles in the interaction between cells and their environment, and in pathogenic microorganisms they are the best targets for drug or vaccine discovery and/or development. In addition, surface proteins can be the basis for serodiagnostic tools aiming at developing more affordable techniques for early diagnosis of infection in patients. We carried out a proteomic analysis of a collection of pediatric clinical isolates of Streptococcus pneumoniae, an important human pathogen responsible for more than 1.5 million child deaths worldwide. For that, cultured live bacterial cells were “shaved” with trypsin, and the recovered peptides were analyzed by LC/MS/MS. We selected 95 proteins to be produced as recombinant polypeptides, and printed them on an array. We probed the protein array with a collection of patient sera to define serodiagnostic antigens. The mass spectrometry proteomics data correspond to those published in [1] and have been deposited to the ProteomeXchange Consortium [2] via the PRIDE partner repository [3] with the dataset identifier PXD001740. The protein array raw data are provided as supplemental material in this article. PMID:26949725

  10. Detection and Analysis of Low-Frequency Sperm Whale Vocalizations with a Towed Array

    NASA Astrophysics Data System (ADS)

    Bohn, Alexander

    Sperm whale vocalizations recorded during a sea test and calibration experiment in the Gulf of Maine on a single towed, horizontal, densely sampled, low-frequency (< 2500 Hz), coherent hydrophone array system are detected and analyzed for signal energy level and other characteristics. The vocalizing individuals are localized in bearing, range, and depth. An algorithm is developed to achieve automatic detection of vocalizations. This analysis is shown to have potential utility despite restriction to only the low-frequency component of the vocalizations by sampling theory. In addition, transmission loss in the New England continental shelf and slope environment is accounted for with an ocean waveguide-acoustic propagation model. Multiple averaged realizations of this model are used to estimate transmission loss as a function of range and depth for transects between the receiver array and vocalizing whales. Comparison of the vocalizations and background noise levels and the estimated transmission loss suggests the sperm whale detection range after coherent array processing exceeds 60 km in low-to-moderate sea states. Low-frequency source levels of vocalizations are estimated using the received levels and the estimated transmission loss, and applications of both this estimate and the receiver-side statistics are discussed.

  11. Array tomography: imaging stained arrays.

    PubMed

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. In this protocol, tissue arrays are imaged using conventional wide-field fluorescence microscopy. Images can be captured manually or, with the appropriate software and hardware, the process can be automated.

  12. Array tomography: production of arrays.

    PubMed

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time consuming and require some practice to perfect. This protocol describes the sectioning of embedded tissues and the mounting of the serial arrays. The procedures require some familiarity with the techniques used for ultramicrotome sectioning for electron microscopy.

  13. Integrated microfluidic array plate (iMAP) for cellular and molecular analysis.

    PubMed

    Dimov, Ivan K; Kijanka, Gregor; Park, Younggeun; Ducrée, Jens; Kang, Taewook; Lee, Luke P

    2011-08-21

    Just as the Petri dish has been invaluable to the evolution of biomedical science in the last 100 years, microfluidic cell assay platforms have the potential to change significantly the way modern biology and clinical science are performed. However, an evolutionary process of creating an efficient microfluidic array for many different bioassays is necessary. Specifically for a complete view of a cell response it is essential to incorporate cytotoxic, protein and gene analysis on a single system. Here we present a novel cellular and molecular analysis platform, which allows access to gene expression, protein immunoassay, and cytotoxicity information in parallel. It is realized by an integrated microfluidic array plate (iMAP). The iMAP enables sample processing of cells, perfusion based cell culture, effective perturbation of biologic molecules or drugs, and simultaneous, real-time optical analysis for different bioassays. The key features of the iMAP design are the interface of on-board gravity driven flow, the open access input fluid exchange and the highly efficient sedimentation based cell capture mechanism (∼100% capture rates). The operation of the device is straightforward (tube and pump free) and capable of handling dilute samples (5-cells per experiment), low reagent volumes (50 nL per reaction), and performing single cell protein and gene expression measurements. We believe that the unique low cell number and triple analysis capabilities of the iMAP platform can enable novel dynamic studies of scarce cells.

  14. Spectral analysis of the primary flight focal plane arrays for the thermal infrared sensor

    NASA Astrophysics Data System (ADS)

    Montanaro, Matthew; Reuter, Dennis C.; Markham, Brian L.; Thome, Kurtis J.; Lunsford, Allen W.; Jhabvala, Murzy D.; Rohrbach, Scott O.; Gerace, Aaron D.

    2011-06-01

    The Thermal Infrared Sensor (TIRS) on board the Landsat Data Continuity Mission (LDCM) is a two-channel, push-broom imager that will continue Landsat thermal band measurements of the Earth. The core of the instrument consists of three Quantum Well Infrared Photodetector (QWIP) arrays whose data are combined to effectively produce a linear array of 1850 pixels for each band with a spatial resolution of approximately 100 meters and a swath width of 185 kilometers. In this push-broom configuration, each pixel may have a slightly different band shape. An on-board blackbody calibrator is used to correct each pixel. However, depending on the scene being observed, striping and other artifacts may still be present in the final data product. The science-focused mission of LDCM requires that these residual effects be understood. The analysis presented here assisted in the selection of the three flight QWIP arrays. Each pixel was scrutinized in terms of its compliance with TIRS spectral requirements. This investigation utilized laboratory spectral measurements of the arrays and filters along with radiometric modeling of the TIRS instrument and environment. These models included standard radiometry equations along with complex physics-based models such as the MODerate spectral resolution TRANsmittance (MODTRAN) and Digital Imaging and Remote Sensing Image Generation (DIRSIG) tools. The laboratory measurements and physics models were used to determine the extent of striping and other spectral artifacts that might be present in the final TIRS data product. The results demonstrate that artifacts caused by the residual pixel-to-pixel spectral non-uniformity are small enough that the data can be expected to meet the TIRS radiometric and image quality requirements.

  15. Statistical Analysis of the Performance of MDL Enumeration for Multiple-Missed Detection in Array Processing

    PubMed Central

    Du, Fei; Li, Yibo; Jin, Shijiu

    2015-01-01

    An accurate performance analysis on the MDL criterion for source enumeration in array processing is presented in this paper. The enumeration results of MDL can be predicted precisely by the proposed procedure via the statistical analysis of the sample eigenvalues, whose distributive properties are investigated with the consideration of their interactions. A novel approach is also developed for the performance evaluation when the source number is underestimated by a number greater than one, which is denoted as “multiple-missed detection”, and the probability of a specific underestimated source number can be estimated by ratio distribution analysis. Simulation results are included to demonstrate the superiority of the presented method over available results and confirm the ability of the proposed approach to perform multiple-missed detection analysis. PMID:26295232

  16. Statistical Analysis of the Performance of MDL Enumeration for Multiple-Missed Detection in Array Processing.

    PubMed

    Du, Fei; Li, Yibo; Jin, Shijiu

    2015-08-18

    An accurate performance analysis on the MDL criterion for source enumeration in array processing is presented in this paper. The enumeration results of MDL can be predicted precisely by the proposed procedure via the statistical analysis of the sample eigenvalues, whose distributive properties are investigated with the consideration of their interactions. A novel approach is also developed for the performance evaluation when the source number is underestimated by a number greater than one, which is denoted as "multiple-missed detection", and the probability of a specific underestimated source number can be estimated by ratio distribution analysis. Simulation results are included to demonstrate the superiority of the presented method over available results and confirm the ability of the proposed approach to perform multiple-missed detection analysis.

  17. Using Solid State Disk Array as a Cache for LHC ATLAS Data Analysis

    NASA Astrophysics Data System (ADS)

    Yang, W.; Hanushevsky, A. B.; Mount, R. P.; Atlas Collaboration

    2014-06-01

    User data analysis in high energy physics presents a challenge to spinning-disk based storage systems. The analysis is data intense, yet reads are small, sparse and cover a large volume of data files. It is also unpredictable due to users' response to storage performance. We describe here a system with an array of Solid State Disk as a non-conventional, standalone file level cache in front of the spinning disk storage to help improve the performance of LHC ATLAS user analysis at SLAC. The system uses several days of data access records to make caching decisions. It can also use information from other sources such as a work-flow management system. We evaluate the performance of the system both in terms of caching and its impact on user analysis jobs. The system currently uses Xrootd technology, but the technique can be applied to any storage system.

  18. Ultrasonic characterization of shear thickening suspensions

    NASA Astrophysics Data System (ADS)

    Johnson, Benjamin Lenihan

    This dissertation describes the characterization of an inherently inhomogeneous medium capable of shear thickening. An aqueous suspension of cornstarch represents an important exemplar of such physical systems. The physics underlying the behavior of such shear thickening suspensions is incompletely understood. Characterization of these suspensions may provide valuable clues into the underlying mechanisms that result in shear thickening behavior. The goal of this thesis is to characterize the acoustic properties of suspensions of cornstarch in density-matched cesium chloride aqueous solutions. A review of the literature indicated that almost no information concerning the ultrasonic characteristics of suspensions of starches had been reported other than studies monitoring the gelatinization of starches not relevant to the shear stiffening of ungelatinized suspensions. Each chapter began with a discussion and validation of the specific experimental techniques and methods of analysis necessary for each type of measurement. Ultrasonic measurement of the group velocity, the frequency-dependent attenuation properties, the frequency-dependent phase velocity, and the frequency-dependent backscatter properties of the suspensions of cornstarch are reported. Initially counterintuitive results including negative (phase velocity) dispersion and a decrease in the measured backscatter coefficient with increasing particle concentration are understood in terms of widely accepted physical models. In sum, these studies represent an advancement of the understanding of the physics underlying the interaction between ultrasound and suspensions and lay the groundwork for future studies probing the physics of the shear thickening.

  19. Metal oxide based multisensor array and portable database for field analysis of antioxidants

    PubMed Central

    Sharpe, Erica; Bradley, Ryan; Frasco, Thalia; Jayathilaka, Dilhani; Marsh, Amanda; Andreescu, Silvana

    2014-01-01

    We report a novel chemical sensing array based on metal oxide nanoparticles as a portable and inexpensive paper-based colorimetric method for polyphenol detection and field characterization of antioxidant containing samples. Multiple metal oxide nanoparticles with various polyphenol binding properties were used as active sensing materials to develop the sensor array and establish a database of polyphenol standards that include epigallocatechin gallate, gallic acid, resveratrol, and Trolox among others. Unique charge-transfer complexes are formed between each polyphenol and each metal oxide on the surface of individual sensors in the array, creating distinct optically detectable signals which have been quantified and logged into a reference database for polyphenol identification. The field-portable Pantone/X-Rite© CapSure® color reader was used to create this database and to facilitate rapid colorimetric analysis. The use of multiple metal-oxide sensors allows for cross-validation of results and increases accuracy of analysis. The database has enabled successful identification and quantification of antioxidant constituents within real botanical extractions including green tea. Formation of charge-transfer complexes is also correlated with antioxidant activity exhibiting electron transfer capabilities of each polyphenol. The antioxidant activity of each sample was calculated and validated against the oxygen radical absorbance capacity (ORAC) assay showing good comparability. The results indicate that this method can be successfully used for a more comprehensive analysis of antioxidant containing samples as compared to conventional methods. This technology can greatly simplify investigations into plant phenolics and make possible the on-site determination of antioxidant composition and activity in remote locations. PMID:24610993

  20. Metal oxide based multisensor array and portable database for field analysis of antioxidants.

    PubMed

    Sharpe, Erica; Bradley, Ryan; Frasco, Thalia; Jayathilaka, Dilhani; Marsh, Amanda; Andreescu, Silvana

    2014-03-31

    We report a novel chemical sensing array based on metal oxide nanoparticles as a portable and inexpensive paper-based colorimetric method for polyphenol detection and field characterization of antioxidant containing samples. Multiple metal oxide nanoparticles with various polyphenol binding properties were used as active sensing materials to develop the sensor array and establish a database of polyphenol standards that include epigallocatechin gallate, gallic acid, resveratrol, and Trolox among others. Unique charge-transfer complexes are formed between each polyphenol and each metal oxide on the surface of individual sensors in the array, creating distinct optically detectable signals which have been quantified and logged into a reference database for polyphenol identification. The field-portable Pantone/X-Rite© CapSure® color reader was used to create this database and to facilitate rapid colorimetric analysis. The use of multiple metal-oxide sensors allows for cross-validation of results and increases accuracy of analysis. The database has enabled successful identification and quantification of antioxidant constituents within real botanical extractions including green tea. Formation of charge-transfer complexes is also correlated with antioxidant activity exhibiting electron transfer capabilities of each polyphenol. The antioxidant activity of each sample was calculated and validated against the oxygen radical absorbance capacity (ORAC) assay showing good comparability. The results indicate that this method can be successfully used for a more comprehensive analysis of antioxidant containing samples as compared to conventional methods. This technology can greatly simplify investigations into plant phenolics and make possible the on-site determination of antioxidant composition and activity in remote locations.

  1. Analysis of oligonucleotide array experiments with repeated measures using mixed models.

    PubMed

    Li, Hao; Wood, Constance L; Getchell, Thomas V; Getchell, Marilyn L; Stromberg, Arnold J

    2004-12-30

    Two or more factor mixed factorial experiments are becoming increasingly common in microarray data analysis. In this case study, the two factors are presence (Patients with Alzheimer's disease) or absence (Control) of the disease, and brain regions including olfactory bulb (OB) or cerebellum (CER). In the design considered in this manuscript, OB and CER are repeated measurements from the same subject and, hence, are correlated. It is critical to identify sources of variability in the analysis of oligonucleotide array experiments with repeated measures and correlations among data points have to be considered. In addition, multiple testing problems are more complicated in experiments with multi-level treatments or treatment combinations. In this study we adopted a linear mixed model to analyze oligonucleotide array experiments with repeated measures. We first construct a generalized F test to select differentially expressed genes. The Benjamini and Hochberg (BH) procedure of controlling false discovery rate (FDR) at 5% was applied to the P values of the generalized F test. For those genes with significant generalized F test, we then categorize them based on whether the interaction terms were significant or not at the alpha-level (alphanew = 0.0033) determined by the FDR procedure. Since simple effects may be examined for the genes with significant interaction effect, we adopt the protected Fisher's least significant difference test (LSD) procedure at the level of alphanew to control the family-wise error rate (FWER) for each gene examined. A linear mixed model is appropriate for analysis of oligonucleotide array experiments with repeated measures. We constructed a generalized F test to select differentially expressed genes, and then applied a specific sequence of tests to identify factorial effects. This sequence of tests applied was designed to control for gene based FWER.

  2. Analysis of oligonucleotide array experiments with repeated measures using mixed models

    PubMed Central

    Li, Hao; Wood, Constance L; Getchell, Thomas V; Getchell, Marilyn L; Stromberg, Arnold J

    2004-01-01

    Background Two or more factor mixed factorial experiments are becoming increasingly common in microarray data analysis. In this case study, the two factors are presence (Patients with Alzheimer's disease) or absence (Control) of the disease, and brain regions including olfactory bulb (OB) or cerebellum (CER). In the design considered in this manuscript, OB and CER are repeated measurements from the same subject and, hence, are correlated. It is critical to identify sources of variability in the analysis of oligonucleotide array experiments with repeated measures and correlations among data points have to be considered. In addition, multiple testing problems are more complicated in experiments with multi-level treatments or treatment combinations. Results In this study we adopted a linear mixed model to analyze oligonucleotide array experiments with repeated measures. We first construct a generalized F test to select differentially expressed genes. The Benjamini and Hochberg (BH) procedure of controlling false discovery rate (FDR) at 5% was applied to the P values of the generalized F test. For those genes with significant generalized F test, we then categorize them based on whether the interaction terms were significant or not at the α-level (αnew = 0.0033) determined by the FDR procedure. Since simple effects may be examined for the genes with significant interaction effect, we adopt the protected Fisher's least significant difference test (LSD) procedure at the level of αnew to control the family-wise error rate (FWER) for each gene examined. Conclusions A linear mixed model is appropriate for analysis of oligonucleotide array experiments with repeated measures. We constructed a generalized F test to select differentially expressed genes, and then applied a specific sequence of tests to identify factorial effects. This sequence of tests applied was designed to control for gene based FWER. PMID:15626348

  3. Analysis and fabrication of corner cube array based on laser direct writing technology.

    PubMed

    Lou, Yimin; Wang, Hui; Liu, Qingkun; Shi, Yaocheng; He, Sailing

    2010-10-10

    A detailed analysis of corner cube array (CCA) structure is carried out using the commercially available ray-tracing software ZEMAX. The retroreflective properties of CCA for short-range and long-range propagation are compared. An improved CCA structure with a relatively low structural depth (compared with rectangular CCA) is designed and analyzed. Higher retroreflectance (compared with triangular CCA) at a specific incident angle is proved by ray tracing. Two kinds of CCA structures, including the improved CCA, have been fabricated using laser direct writing technology. The fabrication results are qualified by three-dimensional shape measurement and ray tracing.

  4. Performance of a process, near infrared, photo-diode array based instrument for hydrocarbon fuels analysis

    SciTech Connect

    Workman, J. Jr; McDermott, L.

    1995-12-31

    The use of a 1024 element silicon photodiode-array (PDA) detector for the design of analytical spectrophotometers has been proposed since the early 1970s. The practical implementation of this technology did not occur for another decade. Traditional problems associated with interferometer-and moving dispersive grating based systems arise from mechanical misalignment and wear of critical moving parts with time. PDA technology represents the potential of increased measurement longevity due to a fixed grating and detector assembly. The purpose of this paper is to delineate the particulars of design and performance characteristics associated with using PDA-based spectrophotometer for hydrocarbon fuels analysis.

  5. Low-volume multiplexed proteolytic activity assay and inhibitor analysis through a pico-injector array.

    PubMed

    Ng, Ee Xien; Miller, Miles A; Jing, Tengyang; Lauffenburger, Doug A; Chen, Chia-Hung

    2015-02-21

    Secreted active proteases, from families of enzymes such as matrix metalloproteinases (MMPs) and ADAMs (a disintegrin and metalloproteinases), participate in diverse pathological processes. To simultaneously measure multiple specific protease activities, a series of parallel enzyme reactions combined with a series of inhibitor analyses for proteolytic activity matrix analysis (PrAMA) are essential but limited due to the sample quantity requirements and the complexity of performing multiple reactions. To address these issues, we developed a pico-injector array to generate 72 different reactions in picoliter-volume droplets by controlling the sequence of combinational injections, which allowed simultaneous recording of a wide range of multiple enzyme reactions and measurement of inhibitor effects using small sample volumes (~10 μL). Multiple MMP activities were simultaneously determined by 9 different substrates and 2 inhibitors using injections from a pico-injector array. Due to the advantages of inhibitor analysis, the MMP/ADAM activities of MDA-MB-231, a breast cancer cell line, were characterized with high MMP-2, MMP-3 and ADAM-10 activity. This platform could be customized for a wide range of applications that also require multiple reactions with inhibitor analysis to enhance the sensitivity by encapsulating different chemical sensors.

  6. A Thermal Analysis Approach for the Mars Odyssey Spacecraft's Solar Array

    NASA Technical Reports Server (NTRS)

    Dec, John A.; Amundsen, Ruth M.

    2003-01-01

    There are numerous challenges associated with placing a spacecraft in orbit around Mars. Often. trades must be made such as the mass of the payload and the amount of fuel that can be carried. One technique employed to more efficiently place a spacecraft in orbit while maximizing payload mass (minimizing fuel use) is aerobraking. The Mars Odyssey Spacecraft made use of aerobraking to gradually reduce its orbit period from a highly elliptical insertion orbit to its final science orbit. Aerobraking introduces its own unique challenges, in particular, predicting the thermal response of the spacecraft and its components during each aerobraking drag pass. This paper describes the methods used to perform aerobraking thermal analysis using finite element thermal models of the Mars Odyssey Spacecraft's solar array. To accurately model the complex behavior during aerobraking, the thermal analysis must be tightly coupled to the spatially varying, time dependent aerodynamic heating analysis. Also, to properly represent the temperatures prior to the start of the drag pass. the model must include the orbital solar and planetary heat fluxes. It is critical that the thermal behavior be predicted accurately to maintain the solar array below its structural flight allowable temperature limit. The goal of this paper is to describe a thermal modeling method that was developed for this purpose.

  7. Collapsing granular suspensions.

    PubMed

    Kadau, D; Andrade, J S; Herrmann, H J

    2009-11-01

    A 2D contact dynamics model is proposed as a microscopic description of a collapsing suspension/soil to capture the essential physical processes underlying the dynamics of generation and collapse of the system. Our physical model is compared with real data obtained from in situ measurements performed with a natural collapsing/suspension soil. We show that the shear strength behavior of our collapsing suspension/soil model is very similar to the behavior of this collapsing suspension soil, for both the unperturbed and the perturbed phases of the material.

  8. Hydrodynamics of bacterial suspensions

    NASA Astrophysics Data System (ADS)

    Arlt, Jochen; Duncan, William J.; Poon, Wilson C. K.

    2005-08-01

    Suspensions of motile E. coli bacteria serve as a model system to experimentally study the hydrodynamics of active particle suspensions. Colloidal probe particles are localised within a suspension of motile bacteria by use of optical tweezers and their uctuations are monitored. The activity of the bacteria effects the fluctuations of the probe particles and their correlation, revealing information about the hydrodynamics of the suspension. We highlight experimental problems that make the interpretation of 'single probe' experiments (as reported before in literature) diffcult and present some preliminary results for 'dual probe' cross-correlation experiments.

  9. Array Processing and Forward Modeling Methods for the Analysis of Stiffened, Fluid-Loaded Cylindrical Shells.

    NASA Astrophysics Data System (ADS)

    Bondaryk, Joseph E.

    This thesis investigates array processing and forward modeling methods for the analysis of experimental, structural acoustic data to understand wave propagation on fluid-loaded, elastic, cylindrical shells in the mid -frequency range, 2 < ka < 12. The transient, acoustic, in-plane, bistatic scattering response to wideband, plane waves at various angles of incidence was collected by a synthetic array for three shells, a finite, air-filled, empty thin shell, a duplicate shell stiffened with four unequally spaced ring-stiffeners and a duplicate ribbed shell augmented by resiliently-mounted, wave-bearing, internal structural elements. Array and signal processing techniques, including source deconvolution, array weighting, conventional focusing and the removal of the geometrically scattered contribution, are used to transform the collected data to a more easily interpreted representation. The resulting waveforms show that part of the transient, dynamic, structural response of the shell surface which is capable of radiating to the far field. Compressional membrane waves are directly observable in this representation and evidence of flexural membrane waves is present. Comparisons between the shells show energy compartmentalized by the ring stiffeners and coupled into the wave-bearing internals. Energy calculations show a decay rate of 30dB/msec due to radiation for the Empty shell but only 10dB/msec for the other shells at bow incidence. The Radon Transform is used to estimate the reflection coefficient of compressional waves at the shell endcap as 0.2. The measurement array does not provide enough resolution to allow use of this technique to determine the reflection, transmission and coupling coefficients at the ring stiffeners. Therefore, a forward modeling technique is used to further analyze the 0^ circ incidence case. This modeling couples a Transmission Line model of the shell with a Simulated Annealing approach to multi-dimensional, parameter estimation. This

  10. Microstamped Petri Dishes for Scanning Electrochemical Microscopy Analysis of Arrays of Microtissues

    PubMed Central

    Sridhar, Adithya; de Boer, Hans L.; van den Berg, Albert; Le Gac, Séverine

    2014-01-01

    While scanning electrochemical microscopy (SECM) is a powerful technique for non-invasive analysis of cells, SECM-based assays remain scarce and have been mainly limited so far to single cells, which is mostly due to the absence of suitable platform for experimentation on 3D cellular aggregates or microtissues. Here, we report stamping of a Petri dish with a microwell array for large-scale production of microtissues followed by their in situ analysis using SECM. The platform is realized by hot embossing arrays of microwells (200 μm depth; 400 μm diameter) in commercially available Petri dishes, using a PDMS stamp. Microtissues form spontaneously in the microwells, which is demonstrated here using various cell lines (e.g., HeLa, C2C12, HepG2 and MCF-7). Next, the respiratory activity of live HeLa microtissues is assessed by monitoring the oxygen reduction current in constant height mode and at various distances above the platform surface. Typically, at a 40 μm distance from the microtissue, a 30% decrease in the oxygen reduction current is measured, while above 250 μm, no influence of the presence of the microtissues is detected. After exposure to a model drug (50% ethanol), no such changes in oxygen concentration are found at any height in solution, which reflects that microtissues are not viable anymore. This is furthermore confirmed using conventional live/dead fluorescent stains. This live/dead assay demonstrates the capability of the proposed approach combining SECM and microtissue arrays formed in a stamped Petri dish for conducting cellular assays in a non-invasive way on 3D cellular models. PMID:24690887

  11. Ultrasensitive Label-free Electronic Chip for DNA Analysis Using Carbon Nanotube Nanoelectrode Arrays

    NASA Technical Reports Server (NTRS)

    Li, Jun; Koehne, Jessica; Chen, Hua; Cassell, Alan; Ng, Hou Tee; Ye, Qi; Han, Jie; Meyyappan, M.

    2004-01-01

    There is a strong need for faster, cheaper, and simpler methods for nucleic acid analysis in today s clinical tests. Nanotechnologies can potentially provide solutions to these requirements by integrating nanomaterials with biofunctionalities. Dramatic improvement in the sensitivity and multiplexing can be achieved through the high-degree miniaturization. Here, we present our study in the development of an ultrasensitive label-free electronic chip for DNA/RNA analysis based on carbon nanotube nanoelectrode arrays. A reliable nanoelectrode array based on vertically aligned multi-walled carbon nanotubes (MWNTs) embedded in a SiO2 matrix is fabricated using a bottom-up approach. Characteristic nanoelectrode behavior is observed with a low-density MWNT nanoelectrode array in measuring both the bulk and surface immobilized redox species. The open-end of MWNTs are found to present similar properties as graphite edge-plane electrodes, with a wide potential window, flexible chemical functionalities, and good biocompatibility. A BRCA1 related oligonucleotide probe with 18 bases is covalently functionalized at the open ends of the MWNTs and specifically hybridized with an oligonucleotide target as well as a PCR amplicon. The guanine bases in the target molecules are employed as the signal moieties for the electrochemical measurements. Ru(bpy)3(2+) mediator is used to further amplify the guanine oxidation signal. This technique has been employed for direct electrochemical detection of label-free PCR amplicon through specific hybridization with the BRCAl probe. The detection limit is estimated to be less than approximately 1000 DNA molecules, approaching the limit of the sensitivity by laser-based fluorescence techniques in DNA microarray. This system provides a general electronic platform for rapid molecular diagnostics in applications requiring ultrahigh sensitivity, high-degree of miniaturization, simple sample preparation, and low- cost operation.

  12. Hindlimb suspension reduces muscle regeneration

    NASA Technical Reports Server (NTRS)

    Mozdziak, P. E.; Truong, Q.; Macius, A.; Schultz, E.

    1998-01-01

    Exposure of juvenile skeletal muscle to a weightless environment reduces growth and satellite cell mitotic activity. However, the effect of a weightless environment on the satellite cell population during muscle repair remains unknown. Muscle injury was induced in rat soleus muscles using the myotoxic snake venom, notexin. Rats were placed into hindlimb-suspended or weightbearing groups for 10 days following injury. Cellular proliferation during regeneration was evaluated using 5-bromo-2'-deoxyuridine (BrdU) immunohistochemistry and image analysis. Hindlimb suspension reduced (P < 0.05) regenerated muscle mass, regenerated myofiber diameter, uninjured muscle mass, and uninjured myofiber diameter compared to weightbearing rats. Hindlimb suspension reduced (P < 0.05) BrdU labeling in uninjured soleus muscles compared to weight-bearing muscles. However, hindlimb suspension did not abolish muscle regeneration because myofibers formed in the injured soleus muscles of hindlimb-suspended rats, and BrdU labeling was equivalent (P > 0.10) on myofiber segments isolated from the soleus muscles of hindlimb-suspended and weightbearing rats following injury. Thus, hindlimb suspension (weightlessness) does not suppress satellite cell mitotic activity in regenerating muscles before myofiber formation, but reduces growth of the newly formed myofibers.

  13. Hindlimb suspension reduces muscle regeneration

    NASA Technical Reports Server (NTRS)

    Mozdziak, P. E.; Truong, Q.; Macius, A.; Schultz, E.

    1998-01-01

    Exposure of juvenile skeletal muscle to a weightless environment reduces growth and satellite cell mitotic activity. However, the effect of a weightless environment on the satellite cell population during muscle repair remains unknown. Muscle injury was induced in rat soleus muscles using the myotoxic snake venom, notexin. Rats were placed into hindlimb-suspended or weightbearing groups for 10 days following injury. Cellular proliferation during regeneration was evaluated using 5-bromo-2'-deoxyuridine (BrdU) immunohistochemistry and image analysis. Hindlimb suspension reduced (P < 0.05) regenerated muscle mass, regenerated myofiber diameter, uninjured muscle mass, and uninjured myofiber diameter compared to weightbearing rats. Hindlimb suspension reduced (P < 0.05) BrdU labeling in uninjured soleus muscles compared to weight-bearing muscles. However, hindlimb suspension did not abolish muscle regeneration because myofibers formed in the injured soleus muscles of hindlimb-suspended rats, and BrdU labeling was equivalent (P > 0.10) on myofiber segments isolated from the soleus muscles of hindlimb-suspended and weightbearing rats following injury. Thus, hindlimb suspension (weightlessness) does not suppress satellite cell mitotic activity in regenerating muscles before myofiber formation, but reduces growth of the newly formed myofibers.

  14. A review and analysis on growth and optical absorption properties of silicon nanowire array for photovoltaic applications

    NASA Astrophysics Data System (ADS)

    Sharma, Ritu; Dusad, Lalit Kumar

    2015-11-01

    In this paper, optical absorptions in silicon nanowires (SiNWs) arrays obtained from theoretical studies and experimental approaches have been reviewed. A brief description on the different growth techniques for SiNW arrays reported so far is presented. Comparative analysis based on major research findings has been done and the advantages of SiNW-based solar cells over thin film solar cells are presented. Furthermore, future aspects of the use of SiNWs for photovoltaic applications are discussed.

  15. Detecting seismic activity with a covariance matrix analysis of data recorded on seismic arrays

    NASA Astrophysics Data System (ADS)

    Seydoux, L.; Shapiro, N. M.; de Rosny, J.; Brenguier, F.; Landès, M.

    2016-03-01

    Modern seismic networks are recording the ground motion continuously at the Earth's surface, providing dense spatial samples of the seismic wavefield. The aim of our study is to analyse these records with statistical array-based approaches to identify coherent time-series as a function of time and frequency. Using ideas mainly brought from the random matrix theory, we analyse the spatial coherence of the seismic wavefield from the width of the covariance matrix eigenvalue distribution. We propose a robust detection method that could be used for the analysis of weak and emergent signals embedded in background noise, such as the volcanic or tectonic tremors and local microseismicity, without any prior knowledge about the studied wavefields. We apply our algorithm to the records of the seismic monitoring network of the Piton de la Fournaise volcano located at La Réunion Island and composed of 21 receivers with an aperture of ˜15 km. This array recorded many teleseismic earthquakes as well as seismovolcanic events during the year 2010. We show that the analysis of the wavefield at frequencies smaller than ˜0.1 Hz results in detection of the majority of teleseismic events from the Global Centroid Moment Tensor database. The seismic activity related to the Piton de la Fournaise volcano is well detected at frequencies above 1 Hz.

  16. Analytical Kinematics and Coupled Vibrations Analysis of Mechanical System Operated by Solar Array Drive Assembly

    NASA Astrophysics Data System (ADS)

    Sattar, M.; Wei, C.; Jalali, A.; Sattar, R.

    2017-07-01

    To address the impact of solar array (SA) anomalies and vibrations on performance of precision space-based operations, it is important to complete its accurate jitter analysis. This work provides mathematical modelling scheme to approximate kinematics and coupled micro disturbance dynamics of rigid load supported and operated by solar array drive assembly (SADA). SADA employed in analysis provides a step wave excitation torque to activate the system. Analytical investigations into kinematics is accomplished by using generalized linear and Euler angle coordinates, applying multi-body dynamics concepts and transformations principles. Theoretical model is extended, to develop equations of motion (EoM), through energy method (Lagrange equation). The main emphasis is to research coupled frequency response by determining energies dissipated and observing dynamic behaviour of internal vibratory systems of SADA. The disturbance model captures discrete active harmonics of SADA, natural modes and vibration amplifications caused by interactions between active harmonics and structural modes of mechanical assembly. The proposed methodology can help to predict true micro disturbance nature of SADA operating rigid load. Moreover, performance outputs may be compared against actual mission requirements to assess precise spacecraft controller design to meet next space generation stringent accuracy goals.

  17. Clinical application of SNP array analysis in first-trimester pregnancy loss: a prospective study.

    PubMed

    Wang, Y; Cheng, Q; Meng, L; Luo, C; Hu, H; Zhang, J; Cheng, J; Xu, T; Jiang, T; Liang, D; Hu, P; Xu, Z

    2017-06-01

    Chromosomal microarray analysis (CMA) has been used routinely in pediatric and prenatal genetic diagnosis in clinical practice, but it has rarely been applied to miscarriage analysis. In this study, we conducted a prospective study to evaluate the feasibility of CMA for genetic diagnosis of first-trimester miscarriage specimens. We successfully analyzed 551 fresh miscarriage specimens using single-nucleotide polymorphism (SNP) array. Among the specimens, 2.9% (16/551) had significant maternal cell contamination and were excluded from the study. Clinically significant chromosomal abnormalities were identified in 295 (55.1%) cases, including 214 (40%) with aneuploidy, 40 (7.5%) with polyploidy, 19 (3.6%) with partial aneuploidy, 12 (2.2%) with pathogenic microdeletion/microduplication, and 10 (1.9%) with uniparental isodisomy (isoUPD). Variants of uncertain significance were obtained in 15 cases (2.8%). Notably, isoUPD involving a single chromosome (chromosome 22) and two recurrent copy number variations, 22q11.2 microdeletion and 7q11.23 microdeletion, were identified as probably to be associated with miscarriage. The frequency and distribution of genetic aberrations in the spontaneous abortion group was not significantly different from those in the recurrent miscarriage group. Our study suggests SNP array is a reliable, robust, and high-resolution technology for genetic diagnosis of miscarriage in clinical practice. © 2016 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  18. Pattern-recognition analysis of sensor arrays for toxic vapor detection

    SciTech Connect

    Rose-Pehrsson, S.L.

    1988-01-01

    A portable device was developed by Argonne National Laboratory to detect, identify, and warn personnel of the presence of hazardous gases and vapors. The prototype device uses an array of four different electrochemical sensors, which can be operated in four different modes, yielding 16 channels of data for each chemical species detected. Pattern recognition was used to determine the uniqueness of the information obtained and classification capacity of each channel. Analysis of a 22 vapor data set indicates that 10 channels provide unique information. An array of surface acoustic wave (SAW) devices coated with selectively sorbent materials has been investigated as a monitor for personnel safety where detection of hazardous vapors is required at sub-part-per-million (sub-ppm) concentrations in ambient air that can contain interferences at much higher concentration. Two large data sets were generated and studied. Principal component analysis demonstrates good separation of the different classes of chemical vapors tested. Hierarchical clustering provides evidence of the correlations between solubility properties and the observed clustering. Pattern recognition methods show that three to four sensors can adequately separate individual vapors of interest from interference vapors. A prediction set generated to test the linear discriminant indicated that all of the vapors are correctly identified, except water. Supervised learning techniques are used to reduce to eight the number of sensors necessary to identify the hazardous vapors in the presence of mixtures.

  19. A 48-pixel array of Single Photon Avalanche Diodes for multispot Single Molecule analysis.

    PubMed

    Gulinatti, Angelo; Rech, Ivan; Maccagnani, Piera; Ghioni, Massimo

    2013-02-04

    In this paper we present an array of 48 Single Photon Avalanche Diodes (SPADs) specifically designed for multispot Single Molecule Analysis. The detectors have been arranged in a 12×4 square geometry with a pitch-to-diameter ratio of ten in order to minimize the collection of the light from non-conjugated excitation spots. In order to explore the trade-offs between the detectors' performance and the optical coupling with the experimental setup, SPADs with an active diameter of 25 and of 50µm have been manufactured. The use of a custom technology, specifically designed for the fabrication of the detectors, allowed us to combine a high photon detection efficiency (peak close to 50% at a wavelength of 550nm) with a low dark count rate compatible with true single molecule detection. In order to allow easy integration into the optical setup for parallel single-molecule analysis, the SPAD array has been incorporated in a compact module containing all the electronics needed for a proper operation of the detectors.

  20. Analysis and design of a multisensory array for explosive substances based on solid electrodes

    NASA Astrophysics Data System (ADS)

    Baron, Mark; Barrett, Richard; Rodriguez, Jose-Gonzalez

    2012-09-01

    The detection of explosives and explosive related compounds is a subject of importance in several areas including environmental health, de-mining efforts (land and sea) and security and defence against terrorist activity. The use of electrochemical methods is particularly attractive as many common explosives contain suitable chemical groups to be detected using electrochemical methods. The electrochemical detection of explosives and related compounds in solution using a virtual metal electrode array and differential pulse voltammetry was achieved. The multiple sets of voltammetric data were integrated using multivariate analysis and matched with known substances present in explosives. Seven explosive substances: 2,4-initrotoluene, 2,6-dinitrotoluene, 3,4-dinitrotoluene, 2-nitrotoluene , octogen (HMX), pentaerithrytol tetranitrate (PETN), trinitrotoluene (TNT) and cyclonite (RDX) and a taggant agent 2,3-dimethyl-2,3-dinitrobutane (DMNB) were subjected to analysis using four solid electrodes, namely glassy carbon, silver, gold and platinum in saline aqueous solutions to mimic an aquatic environment. The results obtained in Differential Pulse Voltammetry (DPV) from the different experiments with each electrode were combined to produce a single voltammogram, which was subjected to chemometric analysis using Partial Least Squares (PLS) and Principle Component Analysis Non-Iterative Partial Least Squares (PCA-NIPALS). A combination of the electrochemical signals obtained together with the use of chemometric analysis made it possible to discriminate between explosives and their mixtures and also to quantitate their concentration in saline solutions. These combinations created a mathematical array, which clearly separates the explosives, even if the electrochemical information is buried or mixed with the electrode background noise.

  1. Effects analysis of array geometry for resolving performance based on spatial average ambiguity function

    NASA Astrophysics Data System (ADS)

    Zha, Guofeng; Wang, Hongqiang; Cheng, Yongqiang; Qin, Yuliang

    2016-03-01

    For analyzing the three dimension (3D) spatial resolving performance of Multi-Transmitter Single-Receiver (MTSR) array radar with stochastic signals, the spatial average ambiguity function (SAAF) was introduced. The analytic expression of SAAF of array radar with stochastic is derived. To analyze the effects of array geometry, comparisons are implemented for three typical array geometries including circular, decussate and planar configuration. Simulated results illustrate that the spatial resolving performance is better for the circular array than that of others. Furthermore, it is shown that the array aperture size and the target's radial range are the main factors impacting the resolving performance.

  2. Naratriptan hydrochloride in extemporaneosly compounded oral suspensions.

    PubMed

    Zhang, Y P; Trissel, L A; Fox, J L

    2000-01-01

    The purpose of this study was to determine the pharmaceutical acceptability and chemical stability of naratriptan hydrochloride in three extemporaneously compounded suspension formulations. The naratriptan-hydrochloride oral suspensions were prepared from 2.5-mg commercial tablets yielding a nominal naratriptan concentration of 0.5 mg/mL. The suspension vehicles selected for testing were Syrpalta, an equal-parts mixture of Ora-Plus and Ora-Sweet, and an equal-parts mixture of Ora-Plus and Ora-Sweet SF. The tablets were crushed and thoroughly triturated to a fine powder using a porcelain mortar and pestle. The powder was incorporated into a portion of the Syrpalta or Ora-Plus suspension vehicle and mixed until homogeneous. The mixtures were then brought to volume with Syrpalta, Ora-Sweet or Ora-Sweet SF, as appropriate. The suspensions were packaged in amber, plastic, screw-cap prescription bottles and stored at 23 deg C for seven days and 4 deg C for 90 days. An adequate suspension was never achieved in Syrpalta. The crushed-tablet powder did not produce a uniformly dispersed mixture and exhibited clumping and a high rate of sedimentation. A distinct layer of the solid tablet material settled immediately after shaking. Over the next four hours, a densely packed, yellow, caked layer formed at the bottom of the containers, making resuspension difficult. During storage, the caking became worse. Chemical analysis was not performed. The Ora-Plus and Ora-Sweet or Ora-Sweet SF suspensions had a slight greenish cast and were resuspended without difficulty by shaking for approximately ten seconds, yielding easily poured and homogeneous mixtures throughout the study. Visible settling and layering did not begin for four hours with the Ora-Sweet suspension and 24 hours for the Ora-Sweet SF suspension. High pressure liquid chromatographic analysis found that the naratriptan concentration in both suspension-vehicle combinations exhibited little or no loss for seven days at 23

  3. Research on School Suspension

    ERIC Educational Resources Information Center

    Iselin, Anne-Marie

    2010-01-01

    Schools across the nation report increases in the use of punitive disciplinary methods (e.g., suspension). The need for these disciplinary practices to address serious student misconduct is undisputed. What research has questioned is why some students seem to be suspended more often than others, what effects suspension has on students, and whether…

  4. Large angle magnetic suspension test fixture

    NASA Technical Reports Server (NTRS)

    Britcher, Colin P. (Principal Investigator); Huang, Jen-Kuang (Principal Investigator)

    1996-01-01

    Good progress is being made in several major areas. These include eddy current modelling and analysis, design optimization methods, wind tunnel Magnetic Suspension and Balance Systems (MSBS), payload pointing and vibration isolation systems, and system identification. In addition, another successful International Symposium has been completed, with the Proceedings being printed at the time of writing. These activities continue current work under this Grant and extend previous work on magnetic suspension systems and devices in the Guidance and Control Branch and will permit the demonstration of several new developments in the field of magnetic suspension technology.

  5. Failure mode analysis of silicon-based intracortical microelectrode arrays in non-human primates

    PubMed Central

    Barrese, James C; Rao, Naveen; Paroo, Kaivon; Triebwasser, Corey; Vargas-Irwin, Carlos; Franquemont, Lachlan; Donoghue, John P

    2016-01-01

    Objective Brain–computer interfaces (BCIs) using chronically implanted intracortical microelectrode arrays (MEAs) have the potential to restore lost function to people with disabilities if they work reliably for years. Current sensors fail to provide reliably useful signals over extended periods of time for reasons that are not clear. This study reports a comprehensive retrospective analysis from a large set of implants of a single type of intracortical MEA in a single species, with a common set of measures in order to evaluate failure modes. Approach Since 1996, 78 silicon MEAs were implanted in 27 monkeys (Macaca mulatta). We used two approaches to find reasons for sensor failure. First, we classified the time course leading up to complete recording failure as acute (abrupt) or chronic (progressive). Second, we evaluated the quality of electrode recordings over time based on signal features and electrode impedance. Failure modes were divided into four categories: biological, material, mechanical, and unknown. Main results Recording duration ranged from 0 to 2104 days (5.75 years), with a mean of 387 days and a median of 182 days (n = 78). Sixty-two arrays failed completely with a mean time to failure of 332 days (median = 133 days) while nine array experiments were electively terminated for experimental reasons (mean = 486 days). Seven remained active at the close of this study (mean = 753 days). Most failures (56%) occurred within a year of implantation, with acute mechanical failures the most common class (48%), largely because of connector issues (83%). Among grossly observable biological failures (24%), a progressive meningeal reaction that separated the array from the parenchyma was most prevalent (14.5%). In the absence of acute interruptions, electrode recordings showed a slow progressive decline in spike amplitude, noise amplitude, and number of viable channels that predicts complete signal loss by about eight years. Impedance measurements showed

  6. Single-strand conformation polymorphism analysis using capillary array electrophoresis for large-scale mutation detection.

    PubMed

    Larsen, Lars Allan; Jespersgaard, Cathrine; Andersen, Paal Skytt

    2007-01-01

    This protocol describes capillary array electrophoresis single-strand conformation polymorphism (CAE-SSCP), a screening method for detection of unknown and previously identified mutations. The method detects 98% of mutations in a sample material and can be applied to any organism where the goal is to determine genetic variation. This protocol describes how to screen for mutations in 192 singleplex or up to 768 multiplex samples over 3 days. The protocol is based on the principle of sequence-specific mobility of single-stranded DNA in a native polymer, and covers all stages in the procedure, from initial DNA purification to final CAE-SSCP data analysis, as follows: DNA is purified, followed by PCR amplification using fluorescent primers. After PCR amplification, double-stranded DNA is heat-denatured to separate the strands and subsequently cooled on ice to avoid reannealing. Finally, samples are analyzed by capillary electrophoresis and appropriate analysis software.

  7. HTSvis: a web app for exploratory data analysis and visualization of arrayed high-throughput screens.

    PubMed

    Scheeder, Christian; Heigwer, Florian; Boutros, Michael

    2017-09-15

    Arrayed high-throughput screens (HTS) cover a broad range of applications using RNAi or small molecules as perturbations and specialized software packages for statistical analysis have become available. However, exploratory data analysis and integration of screening results has remained challenging due to the size of the data sets and the lack of user-friendly tools for interpretation and visualization of screening results. Here we present HTSvis, a web application to interactively visualize raw data, perform quality control and assess screening results from single to multi-channel measurements such as image-based screens. Per well aggregated raw and analyzed data of various assay types and scales can be loaded in a generic tabular format. HTSvis is distributed as an open-source R package, downloadable from https://github.com/boutroslab/HTSvis and can also be accessed at http://htsvis.dkfz.de . m.boutros@dkfz.de. Supplementary data are available at Bioinformatics online .

  8. Estimating Rayleigh wave particle motion from three-component array analysis of ambient vibrations

    NASA Astrophysics Data System (ADS)

    Poggi, Valerio; Fäh, Donat

    2010-01-01

    Several methods have been proposed in the past years to extract the Rayleigh wave ellipticity from horizontal-to-vertical spectral ratios of single station ambient noise recordings. The disadvantage of this set of techniques is the difficulty in clearly identifying and separating the contribution of higher modes. In most cases, only the fundamental mode of ellipticity can be identified. Moreover, it is generally difficult to correct for the energy of SH and Love waves present in the horizontal components of the ambient vibration wavefield. We introduce a new methodology to retrieve Rayleigh wave ellipticity using high-resolution frequency-wavenumber array analysis. The technique is applied to the three components of motion and is based on the assumption that an amplitude maximum in the f-k cross-spectrum must represent the true power amplitude of the corresponding signal. In the case of Rayleigh waves, therefore, the ratio between maxima obtained from the horizontal (radial-polarized) and vertical components of motion will also represent the frequency-dependent ellipticity function. Consequently, if we can identify the Rayleigh dispersion curves of several modes on the f-k plane, then the corresponding modal ellipticity patterns can also be separated and extracted. To test the approach, synthetic and real data sets were processed. In all tested cases, a reliable estimation of segments of the fundamental mode ellipticity was obtained. The identification of higher modes is possible in most cases. The quality of results depends on the selected array geometry and the signal-to-noise ratio, with a major improvement achieved by increasing the number of receivers employed during the survey. An experiment conducted in the town of Visp (Switzerland) allowed the retrieval of portions of ellipticity curves up to the second Rayleigh higher mode, using two concentric circular array configurations of 14 and 11 receivers each.

  9. Comparative Proteomic Analysis of Cultured Suspension Cells of the Halophyte Halogeton glomeratus by iTRAQ Provides Insights into Response Mechanisms to Salt Stress

    PubMed Central

    Wang, Juncheng; Yao, Lirong; Li, Baochun; Meng, Yaxiong; Ma, Xiaole; Lai, Yong; Si, Erjing; Ren, Panrong; Yang, Ke; Shang, Xunwu; Wang, Huajun

    2016-01-01

    Soil salinity severely threatens land use capability and crop yields worldwide. An analysis of the molecular mechanisms of salt tolerance in halophytes will contribute to the development of salt-tolerant crops. In this study, a combination of physiological characteristics and iTRAQ-based proteomic approaches was conducted to investigate the molecular mechanisms underlying the salt response of suspension cell cultures of halophytic Halogeton glomeratus. These cells showed halophytic growth responses comparable to those of the whole plant. In total, 97 up-regulated proteins and 192 down-regulated proteins were identified as common to both 200 and 400 mM NaCl concentration treatments. Such salinity responsive proteins were mainly involved in energy, carbohydrate metabolism, stress defense, protein metabolism, signal transduction, cell growth, and cytoskeleton metabolism. Effective regulatory protein expression related to energy, stress defense, and carbohydrate metabolism play important roles in the salt-tolerance of H. glomeratus suspension cell cultures. However, known proteins regulating Na+ efflux from the cytoplasm and its compartmentalization into the vacuole did not change significantly under salinity stress suggesting our existing knowledge concerning Na+ extrusion and compartmentalization in halophytes needs to be evaluated further. Such data are discussed in the context of our current understandings of the mechanisms involved in the salinity response of the halophyte, H. glomeratus. PMID:26904073

  10. A study on the impact of hydroxypropyl methylcellulose on the viscosity of PEG melt suspensions using surface plots and principal component analysis.

    PubMed

    Oh, Ching Mien; Heng, Paul Wan Sia; Chan, Lai Wah

    2015-04-01

    An understanding of the rheological behaviour of polymer melt suspensions is crucial in pharmaceutical manufacturing, especially when processed by spray congealing or melt extruding. However, a detailed comparison of the viscosities at each and every temperature and concentration between the various grades of adjuvants in the formulation will be tedious and time-consuming. Therefore, the statistical method, principal component analysis (PCA), was explored in this study. The composite formulations comprising polyethylene glycol (PEG) 3350 and hydroxypropyl methylcellulose (HPMC) of ten different grades (K100 LV, K4M, K15M, K100M, E15 LV, E50 LV, E4M, F50 LV, F4M and Methocel VLV) at various concentrations were prepared and their viscosities at different temperatures determined. Surface plots showed that concentration of HPMC had a greater effect on the viscosity compared to temperature. Particle size and size distribution of HPMC played an important role in the viscosity of melt suspensions. Smaller particles led to a greater viscosity than larger particles. PCA was used to evaluate formulations of different viscosities. The complex viscosity profiles of the various formulations containing HPMC were successfully classified into three clusters of low, moderate and high viscosity. Formulations within each group showed similar viscosities despite differences in grade or concentration of HPMC. Formulations in the low viscosity cluster were found to be sprayable. PCA was able to differentiate the complex viscosity profiles of different formulations containing HPMC in an efficient and time-saving manner and provided an excellent visualisation of the data.

  11. Analysis of MMIC arrays for use in the ACTS Aero Experiment

    NASA Technical Reports Server (NTRS)

    Zimmerman, M.; Lee, R.; Rho, E.; Zaman, Z.

    1993-01-01

    The Aero Experiment is designed to demonstrate communication from an aircraft to an Earth terminal via the ACTS. This paper describes the link budget and antenna requirements for a 4.8 kbps full-duplex voice link at Ka-Band frequencies. Three arrays, one transmit array developed by TI and two receive arrays developed by GE and Boeing, were analyzed. The predicted performance characteristics of these arrays are presented and discussed in the paper.

  12. Stability of extemporaneously prepared rosuvastatin oral suspension.

    PubMed

    Zaid, Abdel Naser; Shtayah, Rania; Qadumi, Ayman; Ghanem, Mashour; Qedan, Rawan; Daibes, Marah; Awwad, Somud Abu; Jaradat, Nidal; Kittana, Naim

    2017-10-01

    The stability of an extemporaneously prepared rosuvastatin suspension stored over 30 days under various storage conditions was evaluated. Rosuvastatin suspension was extemporaneously prepared using commercial rosuvastatin tablets as the source of active pharmaceutical ingredient. The organoleptic properties, dissolution profile, and stability of the formulation were investigated. For the stability studies, samples of the suspension were stored under 2 storage conditions, room temperature (25 °C and 60% relative humidity) and accelerated stability chambers (40 °C and 75% relative humidity). Viscosity, pH, organoleptic properties, and microbial contamination were evaluated according to the approved specifications. High-performance liquid chromatography was used for the analysis and quantification of rosuvastatin in selected samples. Microbiological investigations were also conducted. The prepared suspension showed acceptable organoleptic properties. It showed complete release of rosuvastatin within 15 minutes. The pH of the suspension was 9.8, which remained unchanged during the stability studies. The microbiological investigations demonstrated that the preparation was free of any microbial contamination. In addition, the suspension showed stability within at least the period of use of a 100-mL rosuvastatin bottle. Extemporaneously prepared rosuvastatin 20-mg/mL suspension was stable for 30 days when stored at room temperature. Copyright © 2017 by the American Society of Health-System Pharmacists, Inc. All rights reserved.

  13. A TSVD Analysis of the Impact of Polarization on Microwave Breast Imaging using an Enclosed Array of Miniaturized Patch Antennas

    PubMed Central

    Mays, R. Owen; Behdad, Nader; Hagness, Susan C.

    2014-01-01

    Microwave breast imaging performance is fundamentally dependent on the quality of information contained within the scattering data. We apply a truncated singular-value decomposition (TSVD) method to evaluate the information contained in a simulated scattering scenario wherein a compact, shielded array of miniaturized patch antennas surrounds an anatomically realistic numerical breast phantom. In particular, we investigate the impact of different antenna orientations (and thus polarizations), namely two array configurations with uniform antenna orientations and one mixed-orientation array configuration. The latter case is of interest because it may offer greater flexibility in antenna and array design. The results of this analysis indicate that mixed-polarization configurations do not degrade information quality compared to uniform-polarization configurations and in fact may enhance imaging performance, and thus represent viable design options for microwave breast imaging systems. PMID:25705136

  14. A TSVD Analysis of the Impact of Polarization on Microwave Breast Imaging using an Enclosed Array of Miniaturized Patch Antennas.

    PubMed

    Mays, R Owen; Behdad, Nader; Hagness, Susan C

    Microwave breast imaging performance is fundamentally dependent on the quality of information contained within the scattering data. We apply a truncated singular-value decomposition (TSVD) method to evaluate the information contained in a simulated scattering scenario wherein a compact, shielded array of miniaturized patch antennas surrounds an anatomically realistic numerical breast phantom. In particular, we investigate the impact of different antenna orientations (and thus polarizations), namely two array configurations with uniform antenna orientations and one mixed-orientation array configuration. The latter case is of interest because it may offer greater flexibility in antenna and array design. The results of this analysis indicate that mixed-polarization configurations do not degrade information quality compared to uniform-polarization configurations and in fact may enhance imaging performance, and thus represent viable design options for microwave breast imaging systems.

  15. High-throughput analysis of thin-film stresses using arrays of micromachined cantilever beams.

    PubMed

    Kim, Hyun-Jong; Han, Jun-Hyun; Kaiser, Roy; Oh, Kyu Hwan; Vlassak, Joost J

    2008-04-01

    We report on a technique for making high-throughput residual stress measurements on thin films by means of micromachined cantilever beams and an array of parallel laser beams. In this technique, the film of interest is deposited onto a silicon substrate with micromachined cantilever beams. The residual stress in the film causes the beams to bend. The curvature of the beams, which is proportional to the residual stress in the film, is measured by scanning an array of parallel laser beams generated with a diffraction grating along the length of the beams. The reflections of the laser beams are captured using a digital camera. A heating stage enables measurement of the residual stress as a function of temperature. As the curvature of each beam is determined by the local stress in the film, the film stress can be mapped across the substrate. This feature makes the technique a useful tool for the combinatorial analysis of phase transformations in thin films, especially when combined with the use of films with lateral composition gradients. As an illustration, we apply the technique to evaluate the thermomechanical behavior of Fe-Pd binary alloys as a function of composition.

  16. Computationally efficient analysis of extraordinary optical transmission through infinite and truncated subwavelength hole arrays

    NASA Astrophysics Data System (ADS)

    Camacho, Miguel; Boix, Rafael R.; Medina, Francisco

    2016-06-01

    The authors present a computationally efficient technique for the analysis of extraordinary transmission through both infinite and truncated periodic arrays of slots in perfect conductor screens of negligible thickness. An integral equation is obtained for the tangential electric field in the slots both in the infinite case and in the truncated case. The unknown functions are expressed as linear combinations of known basis functions, and the unknown weight coefficients are determined by means of Galerkin's method. The coefficients of Galerkin's matrix are obtained in the spatial domain in terms of double finite integrals containing the Green's functions (which, in the infinite case, is efficiently computed by means of Ewald's method) times cross-correlations between both the basis functions and their divergences. The computation in the spatial domain is an efficient alternative to the direct computation in the spectral domain since this latter approach involves the determination of either slowly convergent double infinite summations (infinite case) or slowly convergent double infinite integrals (truncated case). The results obtained are validated by means of commercial software, and it is found that the integral equation technique presented in this paper is at least two orders of magnitude faster than commercial software for a similar accuracy. It is also shown that the phenomena related to periodicity such as extraordinary transmission and Wood's anomaly start to appear in the truncated case for arrays with more than 100 (10 ×10 ) slots.

  17. Analysis of low-offset CTIA amplifier for small-size-pixel infrared focal plane array

    NASA Astrophysics Data System (ADS)

    Zhang, Xue; Huang, Zhangcheng; Shao, Xiumei

    2014-11-01

    The design of input stage amplifier becomes more and more difficult as the expansion of format arrays and reduction of pixel size. A design method of low-offset amplifier based on 0.18-μm process used in small-size pixel is analyzed in order to decrease the dark signal of extended wavelength InGaAs infrared focal plane arrays (IRFPA). Based on an example of a cascode operational amplifier (op-amp), the relationship between input offset voltage and size of each transistor is discussed through theoretical analysis and Monte Carlo simulation. The results indicate that input transistors and load transistors have great influence on the input offset voltage while common-gate transistors are negligible. Furthermore, the offset voltage begins to increase slightly when the width and length of transistors decrease along with the diminution of pixel size, and raises rapidly when the size is smaller than a proximate threshold value. The offset voltage of preamplifiers with differential architecture and single-shared architecture in small pitch pixel are studied. After optimization under same conditions, simulation results show that single-shared architecture has smaller offset voltage than differential architecture.

  18. Modelling the signature of clustered airguns and analysis on the directivity of an airgun array

    NASA Astrophysics Data System (ADS)

    Li, Guofa; Cao, Mingqiang; Chen, Haolin; Ni, Chengzhou

    2011-03-01

    Based on the Giles-Johnston approximation and the analysis of the mutual interaction between two bubbles at different distances, a model is established to simulate the signature of clustered airguns in offshore seismic exploration, concerning the practical factors which have effects on bubble oscillation such as the gun ports throttling and the heat conduction across the bubble wall. By using this model, the signatures of clustered airguns at different distances are calculated with the volume of airguns equal and unequal; the energy distribution of the airgun array signature in three-dimensional (3D) space is also analysed. The result of simulation indicates (1) the pressure wave emitted from bubble oscillation and the ghost wave reflected from the sea surface change the wave field around other bubbles, which makes it the primary source of the mutual interaction between bubbles; (2) with the distance decreasing, the mutual interaction between bubbles becomes strong, the bubble period increases, the primary peak amplitude decreases, and the primary/bubble peak amplitude ratio increases at first and then decreases afterwards; (3) as the distance between bubbles reduced, the bubbles with unequal volumes oscillate with the same period, and the frequency locking phenomenon occurs accompanying the violent bubble oscillation; and (4) the energy of the pressure wave is strongest down below the midpoint of the airgun array, while relatively weak in other directions, this can be used for true amplitude recovery in seismic data processing.

  19. Automatic Actin Filament Quantification of Osteoblasts and Their Morphometric Analysis on Microtextured Silicon-Titanium Arrays

    PubMed Central

    Matschegewski, Claudia; Staehlke, Susanne; Birkholz, Harald; Lange, Regina; Beck, Ulrich; Engel, Konrad; Nebe, J. Barbara

    2012-01-01

    Microtexturing of implant surfaces is of major relevance in the endeavor to improve biorelevant implant designs. In order to elucidate the role of biomaterial’s topography on cell physiology, obtaining quantitative correlations between cellular behavior and distinct microarchitectural properties is in great demand. Until now, the microscopically observed reorganization of the cytoskeleton on structured biomaterials has been difficult to convert into data. We used geometrically microtextured silicon-titanium arrays as a model system. Samples were prepared by deep reactive-ion etching of silicon wafers, resulting in rectangular grooves (width and height: 2 µm) and cubic pillars (pillar dimensions: 2 × 2 × 5 and 5 × 5 × 5 µm); finally sputter-coated with 100 nm titanium. We focused on the morphometric analysis of MG-63 osteoblasts, including a quantification of the actin cytoskeleton. By means of our novel software FilaQuant, especially developed for automatic actin filament recognition, we were first able to quantify the alterations of the actin network dependent on the microtexture of a material surface. The cells’ actin fibers were significantly reduced in length on the pillared surfaces versus the grooved array (4–5 fold) and completely reorganized on the micropillars, but without altering the orientation of cells. Our morpho-functional approach opens new possibilities for the data correlation of cell-material interactions.

  20. Protein array based interactome analysis of amyloid-β indicates an inhibition of protein translation.

    PubMed

    Virok, Dezso P; Simon, Dóra; Bozsó, Zsolt; Rajkó, Róbert; Datki, Zsolt; Bálint, Éva; Szegedi, Viktor; Janáky, Tamás; Penke, Botond; Fülöp, Lívia

    2011-04-01

    Oligomeric amyloid-β is currently of interest in amyloid-β mediated toxicity and the pathogenesis of Alzheimer's disease. Mapping the amyloid-β interaction partners could help to discover novel pathways in disease pathogenesis. To discover the amyloid-β interaction partners, we applied a protein array with more than 8100 unique recombinantly expressed human proteins. We identified 324 proteins as potential interactors of oligomeric amyloid-β. The Gene Ontology functional analysis of these proteins showed that oligomeric amyloid-β bound to multiple proteins with diverse functions both from extra and intracellular localizations. This undiscriminating binding phenotype indicates that multiple protein interactions mediate the toxicity of the oligomeric amyloid-β. The most highly impacted cellular system was the protein translation machinery. Oligomeric amyloid-β could bind to altogether 24 proteins involved in translation initiation and elongation. The binding of amyloid-β to purified rat hippocampal ribosomes validated the protein array results. More importantly, in vitro translation assays showed that the oligomeric amyloid-β had a concentration dependent inhibitory activity on translation. Our results indicate that the inhibited protein synthesis is one of the pathways that can be involved in the amyloid-beta induced neurotoxicity.

  1. Analysis of Deep Drawing Process for Stainless Steel Micro-Channel Array

    PubMed Central

    Chen, Tsung-Chia; Lin, Jiang-Cheng; Lee, Rong-Mao

    2017-01-01

    The stainless steel bipolar plate has received much attention due to the cost of graphite bipolar plates. Since the micro-channel of bipolar plates plays the role of fuel flow field, electric connector and fuel sealing, an investigation of the deep drawing process for stainless steel micro-channel arrays is reported in this work. The updated Lagrangian formulation, degenerated shell finite element analysis, and the r-minimum rule have been employed to study the relationship between punch load and stroke, distributions of stress and strain, thickness variations and depth variations of individual micro-channel sections. A micro-channel array is practically formed, with a width and depth of a single micro-channel of 0.75 mm and 0.5 mm, respectively. Fractures were usually observed in the fillet corner of the micro-channel bottom. According to the experimental results, more attention should be devoted to the fillet dimension design of punch and die. A larger die fillet can lead to better formability and a reduction of the punch load. In addition, the micro-channel thickness and the fillet radius have to be taken into consideration at the same time. Finally, the punch load estimated by the unmodified metal forming equation is higher than that of experiments. PMID:28772782

  2. TRANSPATH: an integrated database on signal transduction and a tool for array analysis.

    PubMed

    Krull, Mathias; Voss, Nico; Choi, Claudia; Pistor, Susanne; Potapov, Anatolij; Wingender, Edgar

    2003-01-01

    TRANSPATH is a database system about gene regulatory networks that combines encyclopedic information on signal transduction with tools for visualization and analysis. The integration with TRANSFAC, a database about transcription factors and their DNA binding sites, provides the possibility to obtain complete signaling pathways from ligand to target genes and their products, which may themselves be involved in regulatory action. As of July 2002, the TRANSPATH Professional release 3.2 contains about 9800 molecules, >1800 genes and >11 400 reactions collected from approximately 5000 references. With the ArrayAnalyzer, an integrated tool has been developed for evaluation of microarray data. It uses the TRANSPATH data set to identify key regulators in pathways connected with up- or down-regulated genes of the respective array. The key molecules and their surrounding networks can be viewed with the PathwayBuilder, a tool that offers four different modes of visualization. More information on TRANSPATH is available at http://www.biobase.de/pages/products/databases.html.

  3. Analysis of Deep Drawing Process for Stainless Steel Micro-Channel Array.

    PubMed

    Chen, Tsung-Chia; Lin, Jiang-Cheng; Lee, Rong-Mao

    2017-04-18

    The stainless steel bipolar plate has received much attention due to the cost of graphite bipolar plates. Since the micro-channel of bipolar plates plays the role of fuel flow field, electric connector and fuel sealing, an investigation of the deep drawing process for stainless steel micro-channel arrays is reported in this work. The updated Lagrangian formulation, degenerated shell finite element analysis, and the r-minimum rule have been employed to study the relationship between punch load and stroke, distributions of stress and strain, thickness variations and depth variations of individual micro-channel sections. A micro-channel array is practically formed, with a width and depth of a single micro-channel of 0.75 mm and 0.5 mm, respectively. Fractures were usually observed in the fillet corner of the micro-channel bottom. According to the experimental results, more attention should be devoted to the fillet dimension design of punch and die. A larger die fillet can lead to better formability and a reduction of the punch load. In addition, the micro-channel thickness and the fillet radius have to be taken into consideration at the same time. Finally, the punch load estimated by the unmodified metal forming equation is higher than that of experiments.

  4. Modal analysis of 2-D sedimentary basin from frequency domain decomposition of ambient vibration array recordings

    NASA Astrophysics Data System (ADS)

    Poggi, Valerio; Ermert, Laura; Michel, Clotaire; Fäh, Donat

    2014-05-01

    The frequency domain decomposition is a well-established spectral technique used in civil engineering to analyze and monitor the modal response of buildings and structures. The method is based on singular value decomposition of the cross-power spectral density matrix from simultaneous array recordings of ambient vibration. This method is advantageous to retrieve not only the resonance frequencies of the investigated structure, but also the corresponding modal shapes without using an absolute reference. This is an important piece of information, which can be used to identify areas of minimum and maximum ground motion on the structure. We apply this approach to evaluate the SH and P-SV resonance characteristics of 2D Alpine sedimentary valleys through decomposition of ambient vibration recordings from linear seismic arrays deployed perpendicularly to the valley axis. Results are presented for a set of synthetic models, initially used to validate the method, and for a real acquisition survey performed in the Rhone valley (Switzerland). For the real case, up to six separate resonant frequencies, together with their corresponding modal shapes, were retrieved for the SH case using the frequency domain decomposition method. We then compare these mode shapes with results from classical site-to-reference spectral ratios and solutions from analytical and numerical modal analysis.

  5. Modal analysis of 2-D sedimentary basin from frequency domain decomposition of ambient vibration array recordings

    NASA Astrophysics Data System (ADS)

    Poggi, Valerio; Ermert, Laura; Burjanek, Jan; Michel, Clotaire; Fäh, Donat

    2015-01-01

    Frequency domain decomposition (FDD) is a well-established spectral technique used in civil engineering to analyse and monitor the modal response of buildings and structures. The method is based on singular value decomposition of the cross-power spectral density matrix from simultaneous array recordings of ambient vibrations. This method is advantageous to retrieve not only the resonance frequencies of the investigated structure, but also the corresponding modal shapes without the need for an absolute reference. This is an important piece of information, which can be used to validate the consistency of numerical models and analytical solutions. We apply this approach using advanced signal processing to evaluate the resonance characteristics of 2-D Alpine sedimentary valleys. In this study, we present the results obtained at Martigny, in the Rhône valley (Switzerland). For the analysis, we use 2 hr of ambient vibration recordings from a linear seismic array deployed perpendicularly to the valley axis. Only the horizontal-axial direction (SH) of the ground motion is considered. Using the FDD method, six separate resonant frequencies are retrieved together with their corresponding modal shapes. We compare the mode shapes with results from classical standard spectral ratios and numerical simulations of ambient vibration recordings.

  6. [Analysis of the mechanism of intensification of fermentation process using yeast cells in a suspension of high-dispersed oxides].

    PubMed

    Bagatskaya, A N; Mazurenko, R V; Makhno, S N; Gorbik, P P

    2014-01-01

    The differential microcalorimetry was used to explore an influence of particles of silicon dioxide, and also other high-dispersed oxides (0.05% of masses.) in water suspension of yeast cells on intensification of the process of their fermentation in endogenous metabolic conditions. It was shown that intensification of the processes of the vital activity of yeast microorganisms was observed in the specified interval of the concentration of silicon dioxide hydrosol particles. Mechanisms of interaction between SiO2 particles and a surface of a cellular organism, as well as interaction between SiO2 particles and one of metabolism products--carbon dioxide were studied. It was found out, that Al2O3, TiO2 hydrosols also had a stimulating effect, but it is lower compared to that of SiO2.

  7. Induction and Analysis of the Alkaloid Mitragynine Content of a Mitragyna speciosa Suspension Culture System upon Elicitation and Precursor Feeding

    PubMed Central

    Mohamad Zuldin, Nor Nahazima; Said, Ikram Md.; Mohd Noor, Normah; Zainal, Zamri; Jin Kiat, Chew; Ismail, Ismanizan

    2013-01-01

    This study aimed to determine the effects of different concentrations and combinations of the phytohormones 2,4-dichlorophenoxy acetic acid (2,4-D), kinetin, 6-benzylaminopurine (BAP), and 1-naphthaleneacetic acid (NAA) on callus induction and to demonstrate the role of elicitors and exogenous precursors on the production of mitragynine in a Mitragyna speciosa suspension culture. The best callus induction was achieved from petiole explants cultured on WPM that was supplemented with 4 mg L−1 2, 4-D (70.83%). Calli were transferred to liquid media and agitated on rotary shakers to establish Mitragyna speciosa cell suspension cultures. The optimum settled cell volume was achieved in the presence of WPM that contained 3 mg L−1 2,4-D and 3% sucrose (9.47 ± 0.4667 mL). The treatment of cultures with different concentrations of yeast extract and salicylic acid for different inoculation periods revealed that the highest mitragynine content as determined by HPLC was achieved from the culture treated with 250 mg L−1 yeast extract (9.275 ± 0.082 mg L−1) that was harvested on day 6 of culturing; salicylic acid showed low mitragynine content in all concentrations used. Tryptophan and loganin were used as exogenous precursors; the highest level of mitragynine production was achieved in cultures treated with 3 μM tryptophan and harvested at 6 days (13.226 ± 1.98 mg L−1). PMID:24065873

  8. Induction and analysis of the alkaloid mitragynine content of a Mitragyna speciosa suspension culture system upon elicitation and precursor feeding.

    PubMed

    Mohamad Zuldin, Nor Nahazima; Said, Ikram Md; Mohd Noor, Normah; Zainal, Zamri; Jin Kiat, Chew; Ismail, Ismanizan

    2013-01-01

    This study aimed to determine the effects of different concentrations and combinations of the phytohormones 2,4-dichlorophenoxy acetic acid (2,4-D), kinetin, 6-benzylaminopurine (BAP), and 1-naphthaleneacetic acid (NAA) on callus induction and to demonstrate the role of elicitors and exogenous precursors on the production of mitragynine in a Mitragyna speciosa suspension culture. The best callus induction was achieved from petiole explants cultured on WPM that was supplemented with 4 mg L⁻¹ 2,4-D (70.83%). Calli were transferred to liquid media and agitated on rotary shakers to establish Mitragyna speciosa cell suspension cultures. The optimum settled cell volume was achieved in the presence of WPM that contained 3 mg L⁻¹ 2,4-D and 3% sucrose (9.47 ± 0.4667 mL). The treatment of cultures with different concentrations of yeast extract and salicylic acid for different inoculation periods revealed that the highest mitragynine content as determined by HPLC was achieved from the culture treated with 250 mg L⁻¹ yeast extract (9.275 ± 0.082 mg L⁻¹) that was harvested on day 6 of culturing; salicylic acid showed low mitragynine content in all concentrations used. Tryptophan and loganin were used as exogenous precursors; the highest level of mitragynine production was achieved in cultures treated with 3  μM tryptophan and harvested at 6 days (13.226 ± 1.98 mg L⁻¹).

  9. Exome Array Analysis Identifies a Common Variant in IL27 Associated with Chronic Obstructive Pulmonary Disease

    PubMed Central

    Parker, Margaret M.; Chen, Han; Lao, Taotao; Hardin, Megan; Qiao, Dandi; Hawrylkiewicz, Iwona; Sliwinski, Pawel; Yim, Jae-Joon; Kim, Woo Jin; Kim, Deog Kyeom; Castaldi, Peter J.; Hersh, Craig P.; Morrow, Jarrett; Celli, Bartolome R.; Pinto-Plata, Victor M.; Criner, Gerald J.; Marchetti, Nathaniel; Bueno, Raphael; Agustí, Alvar; Make, Barry J.; Crapo, James D.; Calverley, Peter M.; Donner, Claudio F.; Lomas, David A.; Wouters, Emiel F. M.; Vestbo, Jorgen; Paré, Peter D.; Levy, Robert D.; Rennard, Stephen I.; Zhou, Xiaobo; Laird, Nan M.; Lin, Xihong; Beaty, Terri H.; Silverman, Edwin K.

    2016-01-01

    Rationale: Chronic obstructive pulmonary disease (COPD) susceptibility is in part related to genetic variants. Most genetic studies have been focused on genome-wide common variants without a specific focus on coding variants, but common and rare coding variants may also affect COPD susceptibility. Objectives: To identify coding variants associated with COPD. Methods: We tested nonsynonymous, splice, and stop variants derived from the Illumina HumanExome array for association with COPD in five study populations enriched for COPD. We evaluated single variants with a minor allele frequency greater than 0.5% using logistic regression. Results were combined using a fixed effects meta-analysis. We replicated novel single-variant associations in three additional COPD cohorts. Measurements and Main Results: We included 6,004 control subjects and 6,161 COPD cases across five cohorts for analysis. Our top result was rs16969968 (P = 1.7 × 10−14) in CHRNA5, a locus previously associated with COPD susceptibility and nicotine dependence. Additional top results were found in AGER, MMP3, and SERPINA1. A nonsynonymous variant, rs181206, in IL27 (P = 4.7 × 10−6) was just below the level of exome-wide significance but attained exome-wide significance (P = 5.7 × 10−8) when combined with results from other cohorts. Gene expression datasets revealed an association of rs181206 and the surrounding locus with expression of multiple genes; several were differentially expressed in COPD lung tissue, including TUFM. Conclusions: In an exome array analysis of COPD, we identified nonsynonymous variants at previously described loci and a novel exome-wide significant variant in IL27. This variant is at a locus previously described in genome-wide associations with diabetes, inflammatory bowel disease, and obesity and appears to affect genes potentially related to COPD pathogenesis. PMID:26771213

  10. Tectonic Tremor analysis with the Taiwan Chelungpu-Fault Drilling Program (TCDP) downhole seismometer array

    NASA Astrophysics Data System (ADS)

    Lin, Y.; Hillers, G.; Ma, K.; Campillo, M.

    2011-12-01

    We study tectonic tremor activity in the Taichung area, Taiwan, analyzing continuous seismic records from 6 short-period sensors of the TCDP borehole array situated around 1 km depth. The low background noise level facilitates the detection of low-amplitude tectonic tremor and low-frequency earthquake (LFE) waveforms. We apply a hierarchical analysis to first detect transient amplitude increases, and to subsequently verify its tectonic origin, i.e. to associate it with tremor signals. The frequency content of tremor usually exceeds the background noise around 2-8 Hz; hence, in the first step, we use BHS1, BHS4 and BHS7 (top, center, bottom sensor) records to detect amplitude anomalies in this frequency range.