Statistical analysis and modeling of intermittent transport events in the tokamak scrape-off layer

DOE Office of Scientific and Technical Information (OSTI.GOV)

Anderson, Johan, E-mail: anderson.johan@gmail.com; Halpern, Federico D.; Ricci, Paolo

The turbulence observed in the scrape-off-layer of a tokamak is often characterized by intermittent events of bursty nature, a feature which raises concerns about the prediction of heat loads on the physical boundaries of the device. It appears thus necessary to delve into the statistical properties of turbulent physical fields such as density, electrostatic potential, and temperature, focusing on the mathematical expression of tails of the probability distribution functions. The method followed here is to generate statistical information from time-traces of the plasma density stemming from Braginskii-type fluid simulations and check this against a first-principles theoretical model. The analysis ofmore » the numerical simulations indicates that the probability distribution function of the intermittent process contains strong exponential tails, as predicted by the analytical theory.« less

From dinosaurs to birds: a tail of evolution

PubMed Central

2014-01-01

A particularly critical event in avian evolution was the transition from long- to short-tailed birds. Primitive bird tails underwent significant alteration, most notably reduction of the number of caudal vertebrae and fusion of the distal caudal vertebrae into an ossified pygostyle. These changes, among others, occurred over a very short evolutionary interval, which brings into focus the underlying mechanisms behind those changes. Despite the wealth of studies delving into avian evolution, virtually nothing is understood about the genetic and developmental events responsible for the emergence of short, fused tails. In this review, we summarize the current understanding of the signaling pathways and morphological events that contribute to tail extension and termination and examine how mutations affecting the genes that control these pathways might influence the evolution of the avian tail. To generate a list of candidate genes that may have been modulated in the transition to short-tailed birds, we analyzed a comprehensive set of mouse mutants. Interestingly, a prevalent pleiotropic effect of mutations that cause fused caudal vertebral bodies (as in the pygostyles of birds) is tail truncation. We identified 23 mutations in this class, and these were primarily restricted to genes involved in axial extension. At least half of the mutations that cause short, fused tails lie in the Notch/Wnt pathway of somite boundary formation or differentiation, leading to changes in somite number or size. Several of the mutations also cause additional bone fusions in the trunk skeleton, reminiscent of those observed in primitive and modern birds. All of our findings were correlated to the fossil record. An open question is whether the relatively sudden appearance of short-tailed birds in the fossil record could be accounted for, at least in part, by the pleiotropic effects generated by a relatively small number of mutational events. PMID:25621146

Initial signatures of magnetic field and energetic particle fluxes at tail reconfiguration - Explosive growth phase

NASA Technical Reports Server (NTRS)

Ohtani, S.; Takahashi, K.; Zanetti, L. J.; Potemra, T. A.; Mcentire, R. W.; Iijima, T.

1992-01-01

The initial signatures of tail field reconfiguration observed in the near-earth magnetotail are examined using data obtained by the AMPTE/CCE magnetometer and the Medium Energy Particle Analyzer. It is found that the tail reconfiguration events could be classified as belonging to two types, Type I and Type II. In Type I events, a current disruption is immersed in a hot plasma region expanding from inward (earthward/equatorward) of the spacecraft; consequently, the spacecraft is immersed in a hot plasma region expanding from inward. The Type II reconfiguration event is characterized by a distinctive interval (explosive growth phase) just prior to the local commencement of tail phase.

MESSENGER Observations of Extreme Magnetic Tail Loading and Unloading during its Third Flyby of Mercury: Substorms?

NASA Astrophysics Data System (ADS)

Slavin, James A.; Anderson, Brian J.; Baker, Daniel N.; Benna, Mehdi; Gloeckler, George; Krimigis, Stamatios M.; McNutt, Ralph L., Jr.; Schriver, David; Solomon, Sean C.; Zurbuchen, Thomas H.

2010-05-01

During MESSENGER's third flyby of Mercury on September 29, 2009, a variable interplanetary magnetic field produced a series of several minute enhancements of the tail magnetic field by factors of ~ 2 to 3.5. The magnetic field flaring during these intervals indicates that they result from loading of the tail with magnetic flux transferred from the dayside magnetosphere. The unloading intervals were associated with plasmoids and traveling compression regions which are well known signatures of tail reconnection. The peak tail magnetic flux during the smallest loading events equaled 30% of the magnetic flux emanating from Mercury, and may have reached 100% for the largest event. In this case the dayside magnetic shielding is reduced and solar wind flux impacting the surface may be greatly enhanced. Despite the intensity of these events and their similarity to terrestrial substorm magnetic flux dynamics, no energetic charged particles with energies greater than 36 keV were observed. This absence of energetic particles constitutes a deepening puzzle for the view that the Mercury magnetosphere system is undergoing dynamical processes analogous to those at Earth during substorm events.

How extreme was the October 2015 flood in the Carolinas? An assessment of flood frequency analysis and distribution tails

NASA Astrophysics Data System (ADS)

Phillips, R. C.; Samadi, S. Z.; Meadows, M. E.

2018-07-01

This paper examines the frequency, distribution tails, and peak-over-threshold (POT) of extreme floods through analysis that centers on the October 2015 flooding in North Carolina (NC) and South Carolina (SC), United States (US). The most striking features of the October 2015 flooding were a short time to peak (Tp) and a multi-hour continuous flood peak which caused intensive and widespread damages to human lives, properties, and infrastructure. The 2015 flooding was produced by a sequence of intense rainfall events which originated from category 4 hurricane Joaquin over a period of four days. Here, the probability distribution and distribution parameters (i.e., location, scale, and shape) of floods were investigated by comparing the upper part of empirical distributions of the annual maximum flood (AMF) and POT with light- to heavy- theoretical tails: Fréchet, Pareto, Gumbel, Weibull, Beta, and Exponential. Specifically, four sets of U.S. Geological Survey (USGS) gauging data from the central Carolinas with record lengths from approximately 65-125 years were used. Analysis suggests that heavier-tailed distributions are in better agreement with the POT and somewhat AMF data than more often used exponential (light) tailed probability distributions. Further, the threshold selection and record length affect the heaviness of the tail and fluctuations of the parent distributions. The shape parameter and its evolution in the period of record play a critical and poorly understood role in determining the scaling of flood response to intense rainfall.

Assessing the genetic diversity of Cu resistance in mine tailings through high-throughput recovery of full-length copA genes

PubMed Central

Li, Xiaofang; Zhu, Yong-Guan; Shaban, Babak; Bruxner, Timothy J. C.; Bond, Philip L.; Huang, Longbin

2015-01-01

Characterizing the genetic diversity of microbial copper (Cu) resistance at the community level remains challenging, mainly due to the polymorphism of the core functional gene copA. In this study, a local BLASTN method using a copA database built in this study was developed to recover full-length putative copA sequences from an assembled tailings metagenome; these sequences were then screened for potentially functioning CopA using conserved metal-binding motifs, inferred by evolutionary trace analysis of CopA sequences from known Cu resistant microorganisms. In total, 99 putative copA sequences were recovered from the tailings metagenome, out of which 70 were found with high potential to be functioning in Cu resistance. Phylogenetic analysis of selected copA sequences detected in the tailings metagenome showed that topology of the copA phylogeny is largely congruent with that of the 16S-based phylogeny of the tailings microbial community obtained in our previous study, indicating that the development of copA diversity in the tailings might be mainly through vertical descent with few lateral gene transfer events. The method established here can be used to explore copA (and potentially other metal resistance genes) diversity in any metagenome and has the potential to exhaust the full-length gene sequences for downstream analyses. PMID:26286020

On the Role of Ionospheric Ions in Sawtooth Events

NASA Astrophysics Data System (ADS)

Lund, E. J.; Nowrouzi, N.; Kistler, L. M.; Cai, X.; Frey, H. U.

2016-12-01

Global multifluid simulations have suggested that ions of ionospheric origin play a key role in driving sawtooth events, particularly events driven by coronal mass ejections (CMEs), through a feedback mechanism.1,2 The energy input from the first substorm causes ion outflow, which is claimed to drive the next substorm. We show that in situ data from Cluster in the tail during sawtooth events do not support this hypothesis. We show two detailed event studies, one driven by a CME and one driven by a streaming interaction region (SIR), as well as a statistical survey of all sawtooth events for which Cluster tail data are available. While examples exist of nightside outflow reaching the mid-tail ( 19 RE) region during CME-driven events, the overwhelming majority of both CME-driven and SIR-driven sawtooth injections have ionospheric ions in this region originating from the cusp, where the outflow is predominantly directly driven by the solar wind. The 19 RE region is critical because that is the region where near-Earth neutral line reconnection occurs. We conclude that while ionospheric outflow may contribute to sawtooth events, the injections are not the result of a feedback between the tail and the ionosphere. 1O. J. Brambles et al. (2011), Science 332, 1183, doi:10.1126/science.1202869.2O. J. Brambles et al. (2013), JGR 118, 6026, doi:10.1002/jgra.50522.

The anatomy of a (potential) disaster: Volcanoes, behavior, and population viability of the short-tailed albatross (Phoebastria albatrus)

USGS Publications Warehouse

Finkelstein, M.E.; Wolf, S.; Goldman, M.; Doak, D.F.; Sievert, P.R.; Balogh, G.; Hasegawa, H.

2010-01-01

Catastrophic events, either from natural (e.g., hurricane) or human-induced (e.g., forest clear-cut) processes, are a well-known threat to wild populations. However, our lack of knowledge about population-level effects of catastrophic events has inhibited the careful examination of how catastrophes affect population growth and persistence. For the critically endangered short-tailed albatross (Phoebastria albatrus), episodic volcanic eruptions are considered a serious catastrophic threat since approximately 80% of the global population of ???2500 birds (in 2006) currently breeds on an active volcano, Torishima Island. We evaluated how short-tailed albatross population persistence is affected by the catastrophic threat of a volcanic eruption relative to chronic threats. We also provide an example for overcoming the seemingly overwhelming problems created by modelling the population dynamics of a species with limited demographic data by incorporating uncertainty in our analysis. As such, we constructed a stochastic age-based matrix model that incorporated both catastrophic mortality due to volcanic eruptions and chronic mortality from several potential sources (e.g., contaminant exposure, fisheries bycatch) to determine the relative effects of these two types of threats on short-tailed albatross population growth and persistence. Modest increases (1%) in chronic (annual) mortality had a 2.5-fold greater effect on predicted short-tailed albatross stochastic population growth rate (lambda) than did the occurrence of periodic volcanic eruptions that follow historic eruption frequencies (annual probability of eruption 2.2%). Our work demonstrates that periodic catastrophic volcanic eruptions, despite their dramatic nature, are less likely to affect the population viability and recovery of short-tailed albatross than low-level chronic mortality. ?? 2009 Elsevier Ltd.

Near-tail reconnection as the cause of cometary tail disconnections

NASA Technical Reports Server (NTRS)

Russell, C. T.; Saunders, M. A.; Phillips, J. L.; Fedder, J. A.

1986-01-01

In a cometary tail disconnection event the plasma tail appears to separate from the coma and to accelerate away from it. As this occurs a new tail begins to form. It is proposed that these disconnections arise in a manner analogous to geomagnetic substorms, i.e., by the formation of a strongly reconnecting region in the near tail that forms a magnetic island in the coma and ejects the plasma tail by strengthening the magnetic 'slingshot' within the tail. This reconnection process may be triggered by several different processes, such as interplanetary shocks or variations in the Alfven Mach number.

Modeling the Pineapple Express phenomenon via Multivariate Extreme Value Theory

NASA Astrophysics Data System (ADS)

Weller, G.; Cooley, D. S.

2011-12-01

The pineapple express (PE) phenomenon is responsible for producing extreme winter precipitation events in the coastal and mountainous regions of the western United States. Because the PE phenomenon is also associated with warm temperatures, the heavy precipitation and associated snowmelt can cause destructive flooding. In order to study impacts, it is important that regional climate models from NARCCAP are able to reproduce extreme precipitation events produced by PE. We define a daily precipitation quantity which captures the spatial extent and intensity of precipitation events produced by the PE phenomenon. We then use statistical extreme value theory to model the tail dependence of this quantity as seen in an observational data set and each of the six NARCCAP regional models driven by NCEP reanalysis. We find that most NCEP-driven NARCCAP models do exhibit tail dependence between daily model output and observations. Furthermore, we find that not all extreme precipitation events are pineapple express events, as identified by Dettinger et al. (2011). The synoptic-scale atmospheric processes that drive extreme precipitation events produced by PE have only recently begun to be examined. Much of the current work has focused on pattern recognition, rather than quantitative analysis. We use daily mean sea-level pressure (MSLP) fields from NCEP to develop a "pineapple express index" for extreme precipitation, which exhibits tail dependence with our observed precipitation quantity for pineapple express events. We build a statistical model that connects daily precipitation output from the WRFG model, daily MSLP fields from NCEP, and daily observed precipitation in the western US. Finally, we use this model to simulate future observed precipitation based on WRFG output driven by the CCSM model, and our pineapple express index derived from future CCSM output. Our aim is to use this model to develop a better understanding of the frequency and intensity of extreme precipitation events produced by PE under climate change.

An analysis of the orbital distribution of solid rocket motor slag

NASA Astrophysics Data System (ADS)

Horstman, Matthew F.; Mulrooney, Mark

2009-01-01

The contribution by solid rocket motors (SRMs) to the orbital debris environment is potentially significant and insufficiently studied. Design and combustion processes can lead to the emission of enough by-products to warrant assessment of their contribution to orbital debris. These particles are formed during SRM tail-off, or burn termination, by the rapid solidification of molten Al2O3 slag accumulated during the burn. The propensity of SRMs to generate particles larger than 100μm raises concerns regarding the debris environment. Sizes as large as 1 cm have been witnessed in ground tests, and comparable sizes have been estimated via observations of sub-orbital tail-off events. Utilizing previous research we have developed more sophisticated size distributions and modeled the time evolution of resultant orbital populations using a historical database of SRM launches, propellant, and likely location and time of tail-off. This analysis indicates that SRM ejecta is a significant component of the debris environment.

Determination of the proton-to-helium ratio in cosmic rays at ultra-high energies from the tail of the Xmax distribution

NASA Astrophysics Data System (ADS)

Yushkov, A.; Risse, M.; Werner, M.; Krieg, J.

2016-12-01

We present a method to determine the proton-to-helium ratio in cosmic rays at ultra-high energies. It makes use of the exponential slope, Λ, of the tail of the Xmax distribution measured by an air shower experiment. The method is quite robust with respect to uncertainties from modeling hadronic interactions and to systematic errors on Xmax and energy, and to the possible presence of primary nuclei heavier than helium. Obtaining the proton-to-helium ratio with air shower experiments would be a remarkable achievement. To quantify the applicability of a particular mass-sensitive variable for mass composition analysis despite hadronic uncertainties we introduce as a metric the 'analysis indicator' and find an improved performance of the Λ method compared to other variables currently used in the literature. The fraction of events in the tail of the Xmax distribution can provide additional information on the presence of nuclei heavier than helium in the primary beam.

ECOLOGIC DRIVERS AND POPULATION IMPACTS OF AVIAN TRICHOMONOSIS MORTALITY EVENTS IN BAND-TAILED PIGEONS (PATAGIOENAS FASCIATA) IN CALIFORNIA, USA.

PubMed

Rogers, Krysta H; Girard, Yvette A; Koenig, Walter D; Johnson, Christine K

2016-07-01

:   Avian trichomonosis, a disease typically caused by the protozoan parasite Trichomonas gallinae , is a well recognized cause of death in many avian species. In California, US, trichomonosis has caused periodic epidemics in Pacific Coast Band-tailed Pigeons ( Patagioenas fasciata monilis). We summarize reported mortality events and investigate ecologic drivers and population impacts associated with epidemic mortality due to trichomonosis in Band-tailed Pigeons. Between 1945 and 2014, 59 mortality events involving Band-tailed Pigeons were reported in California with the number of reported events increasing over time. Estimated mortality for these events was variable, ranging between 10 and 10,000 pigeons. Events were most-frequently reported in Monterey (19%; 11/59) and San Luis Obispo (8%; 5/59) counties. Events often started in January (32%; 9/28) and February (50%; 14/28) and lasted 5-68 d. Impacts of mortality events on pigeon populations were indicated by Breeding Bird Survey and Christmas Bird Count abundance indices, which showed a decline in outbreak years compared to nonoutbreak years. Environmental conditions most associated with outbreak years included higher average temperatures between January and March, the period most associated with mortality events, and lower average precipitation in December just prior to mortality events. In Monterey County, events tended to occur in winters following higher acorn production of coast live oaks ( Quercus agrifolia ) in the fall. Weather and food abundance could be related to increased transmission or enhanced viability of Trichomonas spp. Although estimated mortality due to avian trichomonosis was highly variable across years, cumulative losses were substantial and likely to have a negative impact on population size.

Measures of dependence for multivariate Lévy distributions

NASA Astrophysics Data System (ADS)

Boland, J.; Hurd, T. R.; Pivato, M.; Seco, L.

2001-02-01

Recent statistical analysis of a number of financial databases is summarized. Increasing agreement is found that logarithmic equity returns show a certain type of asymptotic behavior of the largest events, namely that the probability density functions have power law tails with an exponent α≈3.0. This behavior does not vary much over different stock exchanges or over time, despite large variations in trading environments. The present paper proposes a class of multivariate distributions which generalizes the observed qualities of univariate time series. A new consequence of the proposed class is the "spectral measure" which completely characterizes the multivariate dependences of the extreme tails of the distribution. This measure on the unit sphere in M-dimensions, in principle completely general, can be determined empirically by looking at extreme events. If it can be observed and determined, it will prove to be of importance for scenario generation in portfolio risk management.

Statistical properties of derivatives: A journey in term structures

NASA Astrophysics Data System (ADS)

Lautier, Delphine; Raynaud, Franck

2011-06-01

This article presents an empirical study of 13 derivative markets for commodities and financial assets. The study goes beyond statistical analysis by including the maturity as a variable for the daily returns of futures contracts from 1998 to 2010, and for delivery dates up to 120 months. We observe that the mean and variance of the commodities follow a scaling behavior in the maturity dimension with an exponent characteristic of the Samuelson effect. The comparison between the tails of the probability distribution according to the expiration dates shows that there is a segmentation in the fat tails exponent term structure above the Lévy stable region. Finally, we compute the average tail exponent for each maturity, and we observe two regimes of extreme events for derivative markets, reminiscent of a phase diagram with a sharp transition at the 18th delivery month.

The impact of unconfined mine tailings in residential areas from a mining town in a semi-arid environment: Nacozari, Sonora, Mexico

PubMed Central

Meza-Figueroa, Diana; Maier, Raina M.; de la O-Villanueva, Margarita; Gómez-Alvarez, Agustín; Moreno-Zazueta, Alan; Rivera, Jacinto; Campillo, Alberto; Grandlic, Christopher; Anaya, Ricardo; Palafox-Reyes, Juan

2009-01-01

Past mining activities in northern Mexico left a legacy of delerict landscapes devoid of vegetation and seasonal formation of salt efflorescence. Metal content was measured in mine tailings, efflorescent salts, soils, road dust and residential soils to investigate contamination. Climatic effects such as heavy wind and rainfall events can have great impact on the dispersion of metals in semi-arid areas, since soils are typically sparsely vegetated. Geochemical analysis of this site revealed that even though total metal content in mine tailings was relatively low (e.g. Cu = 1000 mg kg-1), metals including Mn, Ba, Zn, and Cu were all found at significantly higher levels in efflorescence salts formed by evaporation on the tailings impoundment surface following the rainy season (e.g. Cu=68000 mg kg-1). Such efflorescent fine-grained salts are susceptible to wind erosion resulting in increased metal spread to nearby residential soils. Our results highlight the importance of seasonally dependent salt-formation and wind erosion in determining risk levels associated with potential inhalation or ingestion of airborne particulates originating from contaminated sites such as tailings impoundments. In low metal-content mine tailings located in arid and semi-arid environments, efflorescence salts could represent a human health risk and a challenge for plant establishment in mine tailings. PMID:19500816

The impact of unconfined mine tailings in residential areas from a mining town in a semi-arid environment: Nacozari, Sonora, Mexico.

PubMed

Meza-Figueroa, Diana; Maier, Raina M; de la O-Villanueva, Margarita; Gómez-Alvarez, Agustín; Moreno-Zazueta, Alan; Rivera, Jacinto; Campillo, Alberto; Grandlic, Christopher J; Anaya, Ricardo; Palafox-Reyes, Juan

2009-09-01

Past mining activities in northern Mexico left a legacy of delerict landscapes devoid of vegetation and seasonal formation of salt efflorescence. Metal content was measured in mine tailings, efflorescent salts, soils, road dust, and residential soils to investigate contamination. Climatic effects such as heavy wind and rainfall events can have great impact on the dispersion of metals in semi-arid areas, since soils are typically sparsely vegetated. Geochemical analysis of this site revealed that even though total metal content in mine tailings was relatively low (e.g. Cu= 1000 mg kg(-1)), metals including Mn, Ba, Zn, and Cu were all found at significantly higher levels in efflorescence salts formed by evaporation on the tailings impoundment surface following the rainy season (e.g. Cu= 68,000 mg kg(-1)). Such efflorescent fine-grained salts are susceptible to wind erosion resulting in increased metal spread to nearby residential soils. Our results highlight the importance of seasonally dependent salt-formation and wind erosion in determining risk levels associated with potential inhalation or ingestion of airborne particulates originating from contaminated sites such as tailings impoundments. In low metal-content mine tailings located in arid and semi-arid environments, efflorescence salts could represent a human health risk and a challenge for plant establishment in mine tailings.

Production of transgenic strawberries by temporary immersion bioreactor system and verification by TAIL-PCR

PubMed Central

Hanhineva, Kati J; Kärenlampi, Sirpa O

2007-01-01

Background Strawberry (Fragaria × ananassa) is an economically important soft fruit crop with polyploid genome which complicates the breeding of new cultivars. For certain traits, genetic engineering offers a potential alternative to traditional breeding. However, many strawberry varieties are quite recalcitrant for Agrobacterium-mediated transformation, and a method allowing easy handling of large amounts of starting material is needed. Also the genotyping of putative transformants is challenging since the isolation of DNA for Southern analysis is difficult due to the high amount of phenolic compounds and polysaccharides that complicate efficient extraction of digestable DNA. There is thus a need to apply a screening method that is sensitive and unambiguous in identifying the different transformation events. Results Hygromycin-resistant strawberries were developed in temporary immersion bioreactors by Agrobacterium-mediated gene transfer. Putative transformants were screened by TAIL-PCR to verify T-DNA integration and to distinguish between the individual transformation events. Several different types of border sequence arrangements were detected. Conclusion This study demonstrates that temporary immersion bioreactor system suits well for the regeneration of transgenic strawberry plants as a labour-efficient technique. Small amount of DNA required by TAIL-PCR is easily recovered even from a small transformant, which allows rapid verification of T-DNA integration and detection of separate gene transfer events. These techniques combined clearly facilitate the generation of transgenic strawberries but should be applicable to other plants as well. PMID:17309794

Controlled chaos: three-dimensional kinematics, fiber histochemistry, and muscle contractile dynamics of autotomized lizard tails.

PubMed

Higham, Timothy E; Lipsett, Kathryn R; Syme, Douglas A; Russell, Anthony P

2013-01-01

The ability to shed an appendage occurs in both vertebrates and invertebrates, often as a tactic to avoid predation. The tails of lizards, unlike most autotomized body parts of animals, exhibit complex and vigorous movements once disconnected from the body. Despite the near ubiquity of autotomy across groups of lizards and the fact that this is an extraordinary event involving the self-severing of the spinal cord, our understanding of why and how tails move as they do following autotomy is sparse. We herein explore the histochemistry and physiology of the tail muscles of the leopard gecko (Eublepharis macularius), a species that exhibits vigorous and variable tail movements following autotomy. To confirm that the previously studied tail movements of this species are generally representative of geckos and therefore suitable for in-depth muscle studies, we quantified the three-dimensional kinematics of autotomized tails in three additional species. The movements of the tails of all species were generally similar and included jumps, flips, and swings. Our preliminary analyses suggest that some species of gecko exhibit short but high-frequency movements, whereas others exhibit larger-amplitude but lower-frequency movements. We then compared the ATPase and oxidative capacity of muscle fibers and contractile dynamics of isolated muscle bundles from original tails, muscle from regenerate tails, and fast fibers from an upper limb muscle (iliofibularis) of the leopard gecko. Histochemical analysis revealed that more than 90% of the fibers in original and regenerate caudal muscles had high ATPase but possessed a superficial layer of fibers with low ATPase and high oxidative capacity. We found that contraction kinetics, isometric force, work, power output, and the oscillation frequency at which maximum power was generated were lowest in the original tail, followed by the regenerate tail and then the fast fibers of the iliofibularis. Muscle from the original tail exhibited greater resistance to fatigue, followed by the regenerate tail and then the fast iliofibularis fibers. These results suggest that the relatively slow and oxidative fibers found within the tail musculature have a significant impact on contractile function, which translates into a trade-off between longevity of performance and power after autotomy.

The role of ensemble post-processing for modeling the ensemble tail

NASA Astrophysics Data System (ADS)

Van De Vyver, Hans; Van Schaeybroeck, Bert; Vannitsem, Stéphane

2016-04-01

The past decades the numerical weather prediction community has witnessed a paradigm shift from deterministic to probabilistic forecast and state estimation (Buizza and Leutbecher, 2015; Buizza et al., 2008), in an attempt to quantify the uncertainties associated with initial-condition and model errors. An important benefit of a probabilistic framework is the improved prediction of extreme events. However, one may ask to what extent such model estimates contain information on the occurrence probability of extreme events and how this information can be optimally extracted. Different approaches have been proposed and applied on real-world systems which, based on extreme value theory, allow the estimation of extreme-event probabilities conditional on forecasts and state estimates (Ferro, 2007; Friederichs, 2010). Using ensemble predictions generated with a model of low dimensionality, a thorough investigation is presented quantifying the change of predictability of extreme events associated with ensemble post-processing and other influencing factors including the finite ensemble size, lead time and model assumption and the use of different covariates (ensemble mean, maximum, spread...) for modeling the tail distribution. Tail modeling is performed by deriving extreme-quantile estimates using peak-over-threshold representation (generalized Pareto distribution) or quantile regression. Common ensemble post-processing methods aim to improve mostly the ensemble mean and spread of a raw forecast (Van Schaeybroeck and Vannitsem, 2015). Conditional tail modeling, on the other hand, is a post-processing in itself, focusing on the tails only. Therefore, it is unclear how applying ensemble post-processing prior to conditional tail modeling impacts the skill of extreme-event predictions. This work is investigating this question in details. Buizza, Leutbecher, and Isaksen, 2008: Potential use of an ensemble of analyses in the ECMWF Ensemble Prediction System, Q. J. R. Meteorol. Soc. 134: 2051-2066.Buizza and Leutbecher, 2015: The forecast skill horizon, Q. J. R. Meteorol. Soc. 141: 3366-3382.Ferro, 2007: A probability model for verifying deterministic forecasts of extreme events. Weather and Forecasting 22 (5), 1089-1100.Friederichs, 2010: Statistical downscaling of extreme precipitation events using extreme value theory. Extremes 13, 109-132.Van Schaeybroeck and Vannitsem, 2015: Ensemble post-processing using member-by-member approaches: theoretical aspects. Q.J.R. Meteorol. Soc., 141: 807-818.

Thresher Sharks Use Tail-Slaps as a Hunting Strategy

PubMed Central

Oliver, Simon P.; Turner, John R.; Gann, Klemens; Silvosa, Medel; D'Urban Jackson, Tim

2013-01-01

The hunting strategies of pelagic thresher sharks (Alopias pelagicus) were investigated at Pescador Island in the Philippines. It has long been suspected that thresher sharks hunt with their scythe-like tails but the kinematics associated with the behaviour in the wild are poorly understood. From 61 observations recorded by handheld underwater video camera between June and October 2010, 25 thresher shark shunting events were analysed. Thresher sharks employed tail-slaps to debilitate sardines at all times of day. Hunting events comprised preparation, strike, wind-down recovery and prey item collection phases, which occurred sequentially. Preparation phases were significantly longer than the others, presumably to enable a shark to windup a tail-slap. Tail-slaps were initiated by an adduction of the pectoral fins, a manoeuvre that changed a thresher shark's pitch promoting its posterior region to lift rapidly, and stall its approach. Tail-slaps occurred with such force that they may have caused dissolved gas to diffuse out of the water column forming bubbles. Thresher sharks were able to consume more than one sardine at a time, suggesting that tail-slapping is an effective foraging strategy for hunting schooling prey. Pelagic thresher sharks appear to pursue sardines opportunistically by day and night, which may make them vulnerable to fisheries. Alopiids possess specialist pectoral and caudal fins that are likely to have evolved, at least in part, for tail-slapping. The evidence is now clear; thresher sharks really do hunt with their tails. PMID:23874415

Thresher sharks use tail-slaps as a hunting strategy.

PubMed

Oliver, Simon P; Turner, John R; Gann, Klemens; Silvosa, Medel; D'Urban Jackson, Tim

2013-01-01

The hunting strategies of pelagic thresher sharks (Alopias pelagicus) were investigated at Pescador Island in the Philippines. It has long been suspected that thresher sharks hunt with their scythe-like tails but the kinematics associated with the behaviour in the wild are poorly understood. From 61 observations recorded by handheld underwater video camera between June and October 2010, 25 thresher shark shunting events were analysed. Thresher sharks employed tail-slaps to debilitate sardines at all times of day. Hunting events comprised preparation, strike, wind-down recovery and prey item collection phases, which occurred sequentially. Preparation phases were significantly longer than the others, presumably to enable a shark to windup a tail-slap. Tail-slaps were initiated by an adduction of the pectoral fins, a manoeuvre that changed a thresher shark's pitch promoting its posterior region to lift rapidly, and stall its approach. Tail-slaps occurred with such force that they may have caused dissolved gas to diffuse out of the water column forming bubbles. Thresher sharks were able to consume more than one sardine at a time, suggesting that tail-slapping is an effective foraging strategy for hunting schooling prey. Pelagic thresher sharks appear to pursue sardines opportunistically by day and night, which may make them vulnerable to fisheries. Alopiids possess specialist pectoral and caudal fins that are likely to have evolved, at least in part, for tail-slapping. The evidence is now clear; thresher sharks really do hunt with their tails.

A Metastatistical Approach to Satellite Estimates of Extreme Rainfall Events

NASA Astrophysics Data System (ADS)

Zorzetto, E.; Marani, M.

2017-12-01

The estimation of the average recurrence interval of intense rainfall events is a central issue for both hydrologic modeling and engineering design. These estimates require the inference of the properties of the right tail of the statistical distribution of precipitation, a task often performed using the Generalized Extreme Value (GEV) distribution, estimated either from a samples of annual maxima (AM) or with a peaks over threshold (POT) approach. However, these approaches require long and homogeneous rainfall records, which often are not available, especially in the case of remote-sensed rainfall datasets. We use here, and tailor it to remotely-sensed rainfall estimates, an alternative approach, based on the metastatistical extreme value distribution (MEVD), which produces estimates of rainfall extreme values based on the probability distribution function (pdf) of all measured `ordinary' rainfall event. This methodology also accounts for the interannual variations observed in the pdf of daily rainfall by integrating over the sample space of its random parameters. We illustrate the application of this framework to the TRMM Multi-satellite Precipitation Analysis rainfall dataset, where MEVD optimally exploits the relatively short datasets of satellite-sensed rainfall, while taking full advantage of its high spatial resolution and quasi-global coverage. Accuracy of TRMM precipitation estimates and scale issues are here investigated for a case study located in the Little Washita watershed, Oklahoma, using a dense network of rain gauges for independent ground validation. The methodology contributes to our understanding of the risk of extreme rainfall events, as it allows i) an optimal use of the TRMM datasets in estimating the tail of the probability distribution of daily rainfall, and ii) a global mapping of daily rainfall extremes and distributional tail properties, bridging the existing gaps in rain gauges networks.

Heavy Tail Behavior of Rainfall Extremes across Germany

NASA Astrophysics Data System (ADS)

Castellarin, A.; Kreibich, H.; Vorogushyn, S.; Merz, B.

2017-12-01

Distributions are termed heavy-tailed if extreme values are more likely than would be predicted by probability distributions that have exponential asymptotic behavior. Heavy-tail behavior often leads to surprise, because historical observations can be a poor guide for the future. Heavy-tail behavior seems to be widespread for hydro-meteorological extremes, such as extreme rainfall and flood events. To date there have been only vague hints to explain under which conditions these extremes show heavy-tail behavior. We use an observational data set consisting of 11 climate variables at 1440 stations across Germany. This homogenized, gap-free data set covers 110 years (1901-2010) at daily resolution. We estimate the upper tail behavior, including its uncertainty interval, of daily precipitation extremes for the 1,440 stations at the annual and seasonal time scales. Different tail indicators are tested, including the shape parameter of the Generalized Extreme Value distribution, the upper tail ratio and the obesity index. In a further step, we explore to which extent the tail behavior can be explained by geographical and climate factors. A large number of characteristics is derived, such as station elevation, degree of continentality, aridity, measures for quantifying the variability of humidity and wind velocity, or event-triggering large-scale atmospheric situation. The link between the upper tail behavior and these characteristics is investigated via data mining methods capable of detecting non-linear relationships in large data sets. This exceptionally rich observational data set, in terms of number of stations, length of time series and number of explaining variables, allows insights into the upper tail behavior which is rarely possible given the typical observational data sets available.

Proceedings of the Conference on Flight Mechanics and System Design Lessons from Operational Experience Held at Athens, Greece on 10-13 May 1983.

DTIC Science & Technology

1983-10-01

of facts and allowed the tail rotor surrounding this mishap. to strike tree branches Particular attention should during night landing. be focused on...aeroplane. Attention was drawn particularly to the event shown in Figure 9 because of its magnitude. An analysis of the event carried out by W. Pinsker at...the JT9, so that the 747-236 with RB 211s suffered a greater deceleration than the 747-136 when the throttles were closed. When the pilots attention

Large Fluctuations for Spatial Diffusion of Cold Atoms

NASA Astrophysics Data System (ADS)

Aghion, Erez; Kessler, David A.; Barkai, Eli

2017-06-01

We use a new approach to study the large fluctuations of a heavy-tailed system, where the standard large-deviations principle does not apply. Large-deviations theory deals with tails of probability distributions and the rare events of random processes, for example, spreading packets of particles. Mathematically, it concerns the exponential falloff of the density of thin-tailed systems. Here we investigate the spatial density Pt(x ) of laser-cooled atoms, where at intermediate length scales the shape is fat tailed. We focus on the rare events beyond this range, which dominate important statistical properties of the system. Through a novel friction mechanism induced by the laser fields, the density is explored with the recently proposed non-normalized infinite-covariant density approach. The small and large fluctuations give rise to a bifractal nature of the spreading packet. We derive general relations which extend our theory to a class of systems with multifractal moments.

Decision Support System for hydrological extremes

NASA Astrophysics Data System (ADS)

Bobée, Bernard; El Adlouni, Salaheddine

2014-05-01

The study of the tail behaviour of extreme event distributions is important in several applied statistical fields such as hydrology, finance, and telecommunications. For example in hydrology, it is important to estimate adequately extreme quantiles in order to build and manage safe and effective hydraulic structures (dams, for example). Two main classes of distributions are used in hydrological frequency analysis: the class D of sub-exponential (Gamma (G2), Gumbel, Halphen type A (HA), Halphen type B (HB)…) and the class C of regularly varying distributions (Fréchet, Log-Pearson, Halphen type IB …) with a heavier tail. A Decision Support System (DSS) based on the characterization of the right tail, corresponding low probability of excedence p (high return period T=1/p, in hydrology), has been developed. The DSS allows discriminating between the class C and D and in its last version, a new prior step is added in order to test Lognormality. Indeed, the right tail of the Lognormal distribution (LN) is between the tails of distributions of the classes C and D; studies indicated difficulty with the discrimination between LN and distributions of the classes C and D. Other tools are useful to discriminate between distributions of the same class D (HA, HB and G2; see other communication). Some numerical illustrations show that, the DSS allows discriminating between Lognormal, regularly varying and sub-exponential distributions; and lead to coherent conclusions. Key words: Regularly varying distributions, subexponential distributions, Decision Support System, Heavy tailed distribution, Extreme value theory

On the mechanism of ray closure in comet tails

NASA Astrophysics Data System (ADS)

Ershkovich, A. I.

The folding phenomenon of comet tail rays is explained by means of an electric drift due to convectional electric fields. This mechanism results in an angular rate of closure which reduces to that obtained by Ness and Donn (1966) if the velocity profile across the tail is linear and the plasma conductivity is ideal. Observations of both the ray closure and the disconnection events point to the phenomenon of anomalous resistivity. Magnetic fields of about 30-40 gammas in the coma and of 10 gammas in the distant tail (at 1 AU) are estimated from the MHD momentum equation.

Extreme event distribution in Space Weather: Characterization of heavy tail distribution using Hurst exponents

NASA Astrophysics Data System (ADS)

Setty, V.; Sharma, A.

2013-12-01

Characterization of extreme conditions of space weather is essential for potential mitigation strategies. The non-equilibrium nature of magnetosphere makes such efforts complicated and new techniques to understand its extreme event distribution are required. The heavy tail distribution in such systems can be a modeled using Stable distribution whose stability parameter is a measure of scaling in the cumulative distribution and is related to the Hurst exponent. This exponent can be readily measured in stationary time series using several techniques and detrended fluctuation analysis (DFA) is widely used in the presence of non-stationarities. However DFA has severe limitations in cases with non-linear and atypical trends. We propose a new technique that utilizes nonlinear dynamical predictions as a measure of trends and estimates the Hurst exponents. Furthermore, such a measure provides us with a new way to characterize predictability, as perfectly detrended data have no long term memory akin to Gaussian noise Ab initio calculation of weekly Hurst exponents using the auroral electrojet index AL over a span of few decades shows that these exponents are time varying and so is its fractal structure. Such time series data with time varying Hurst exponents are modeled well using multifractional Brownian motion and it is shown that DFA estimates a single time averaged value for Hurst exponent in such data. Our results show that using time varying Hurst exponent structure, we can (a) Estimate stability parameter, -a measure of scaling in heavy tails, (b) Define and identify epochs when the magnetosphere switches between regimes with and without extreme events, and, (c) Study the dependence of the Hurst exponents on the solar activity.

Mobility of iridium in terrestrial environments: Implications for the interpretation of impact-related mass-extinctions

NASA Astrophysics Data System (ADS)

Martín-Peinado, F. J.; Rodríguez-Tovar, F. J.

2010-08-01

Traditionally, iridium has been considered an element of low mobility, but its behavior is still debated. Ir concentration in a soil affected by a catastrophic mining spill in 1998 that covered the soil with a layer of tailings offers the opportunity to analyse an exceptional Ir-bearing horizon 10 years after deposition. This has enabled comparisons with the values of past Ir-bearing horizons associated to impact-related mass-extinction events. Iridium concentration in the tailings (0.349 ppm) was 5-fold higher than the anomaly in the K-Pg at The Moody Creek Mine section (the highest values obtained from terrestrial sections). The oxidative weathering of the tailings caused the release of Ir and infiltration into the soil. Iridium distribution in depth indicates redistribution throughout the profile in relation to the change in the physico-chemical properties of the soil. With regard to the background concentration in the soil (0.056 ppm), anomalous values of Ir (0.129 ppm) can be detected to 11 cm below the layer of tailings. The correlation analysis between the Ir concentration and the main properties and constituents of the soils indicated a significant correlation with sulfur, iron, clay content, and pH. Selective extractions were made to study the forms in which Ir can be mobilized in the soil. The residual/insoluble fraction was >90% of the total Ir concentration in soil. Soluble-in-water concentration of Ir (1.5% of total) was detected in the uppermost 2-3 cm of the soil, which were directly affected by the leaching of acidic waters coming from the oxidation of the pyrite tailings. Iridium retention in the affected part of the soil reached 9% of the total Ir concentration; this retention could be related to the amorphous iron forms dissolved by the oxalic-oxalate extraction. However, according to our research, original Ir abundance could be secondarily modified, and then a direct analysis of the iridium values recorded in sediments could induce misinterpretations. The comparison between the actual example and the fossil record belonging to terrestrial settings, can be considered as a valuable approach, especially when Iridium data were used by researchers to interpret the impact-related mass-extinction events in the past.

Data reduction and analysis of ISEE magnetometer experiment

NASA Technical Reports Server (NTRS)

Russell, C. T.

1982-01-01

The ISEE-1 and -2 magnetometer data was reduced. The up and downstream turbulence associated with interplanetary shocks were studied, including methods of determining shock normals, and the similarities and differences in laminar and quasi-laminar shock structure. The associated up and downstream turbulence was emphasized. The distributions of flux transfer events, field aligned currents in the near tail, and substorm dynamics in the magnetotail were also investigated.

Molecular profiling of synchronous and metachronous cancers of the pancreas reveal molecular mimicry between samples from the same patient.

PubMed

Talbott, Vanessa A; Yeo, Charles J; Brody, Jonathan R; Witkiewicz, Agnieszka K

2012-07-01

Pancreatic ductal adenocarcinoma (PDA) is rarely a survivable disease. In rare cases, separate synchronous tumors are discovered at the time of resection, while in others, patients present with a metachronous cancer after prior surgical resection. Studying molecular markers of synchronous and metachronous lesions may aid to clarify the biology of this often deadly disease. Two patients presented with synchronous tumors (each one with a tumor in the pancreatic head/neck and the other in the tail, designated patients A and B). An additional patient (patient C) underwent an R0 resection for PDA of the head and recurred 1.5 y later with PDA in the tail. Genomic DNA was laser capture microdissected (LCM) from the tumor and molecular analysis was performed. K-ras status and loss of heterozygosity (LOH) were determined from multiple specimens for each case. All samples from each patient harbored identical K-ras mutations. In patient A, the tumor at the head of the pancreas had more clonal genetic instability as reflected by LOH analysis over multiple LCM samples. Patient B had more genetic instability in the tail lesion compared with the neck. Patient C had virtually the identical molecular profile in both tumors, supporting the notion that both tumors were related. We conclude that the synchronous and metachronous tumors likely are initiated from identical precursor lesions and/or events (i.e., K-ras mutations). Future studies will need to investigate if these tumors will respond similarly to adjuvant therapies targeted against the clonal molecular events in the tumor. Copyright © 2012 Elsevier Inc. All rights reserved.

Predictability of rogue events.

PubMed

Birkholz, Simon; Brée, Carsten; Demircan, Ayhan; Steinmeyer, Günter

2015-05-29

Using experimental data from three different rogue wave supporting systems, determinism, and predictability of the underlying dynamics are evaluated with methods of nonlinear time series analysis. We included original records from the Draupner platform in the North Sea as well as time series from two optical systems in our analysis. One of the latter was measured in the infrared tail of optical fiber supercontinua, the other in the fluence profiles of multifilaments. All three data sets exhibit extreme-value statistics and exceed the significant wave height in the respective system by a factor larger than 2. Nonlinear time series analysis indicates a different degree of determinism in the systems. The optical fiber scenario is found to be driven by quantum noise whereas rogue waves emerge as a consequence of turbulence in the others. With the large number of rogue events observed in the multifilament system, we can systematically explore the predictability of such events in a turbulent system. We observe that rogue events do not necessarily appear without a warning, but are often preceded by a short phase of relative order. This surprising finding sheds some new light on the fascinating phenomenon of rogue waves.

Anisotropic Electron Tail Generation during Tearing Mode Magnetic Reconnection

NASA Astrophysics Data System (ADS)

Dubois, Ami

2017-10-01

Magnetic reconnection (MR) plays an important role in particle transport, energization, and acceleration in space, astrophysical, and laboratory plasmas. In the MST RFP, discrete MR events release large amounts of energy from the equilibrium magnetic field, a large fraction of which is transferred to the ions in a non-collisional process. Key features are anisotropic heating, mass and charge dependence, and energetic ion tail formation. Unlike the ions, the thermal electron temperature decreases at MR events, which is consistent with enhanced electron heat transport due to increased magnetic stochasticity. However, new high-speed x-ray spectrum measurements reveal transient formation of a non-Maxwellian energetic electron tail during MR. The energetic tail is characterized by a power-law, E-γ, with the spectral index (γ) decreasing from 4.2 to 2.2 at MR, and then increasing rapidly to 6.8 due to increased stochastic transport. The x-ray emission peaks in a radial view and is symmetric in the toroidal direction, indicating an anisotropic electron tail is generated. The toroidal symmetry of the electron tail implies runaway acceleration is not a dominant process, consistent with the net emf, ηJll, being smaller than the Dreicer field. Modeling of bremsstrahlung emission shows that a power-law electron tail distribution that is localized near the magnetic axis will yield strong perpendicular anisotropy, consistent with x-ray measurements in the radial and toroidal views. A strong correlation between high energy x-ray flux and tearing mode dynamics suggests a turbulent mechanism is active. This implies that the electron tail formation most likely results from a turbulent wave-particle interaction. This work is supported by the US DOE and NSF.

Probabilistic forecasting of extreme weather events based on extreme value theory

NASA Astrophysics Data System (ADS)

Van De Vyver, Hans; Van Schaeybroeck, Bert

2016-04-01

Extreme events in weather and climate such as high wind gusts, heavy precipitation or extreme temperatures are commonly associated with high impacts on both environment and society. Forecasting extreme weather events is difficult, and very high-resolution models are needed to describe explicitly extreme weather phenomena. A prediction system for such events should therefore preferably be probabilistic in nature. Probabilistic forecasts and state estimations are nowadays common in the numerical weather prediction community. In this work, we develop a new probabilistic framework based on extreme value theory that aims to provide early warnings up to several days in advance. We consider the combined events when an observation variable Y (for instance wind speed) exceeds a high threshold y and its corresponding deterministic forecasts X also exceeds a high forecast threshold y. More specifically two problems are addressed:} We consider pairs (X,Y) of extreme events where X represents a deterministic forecast, and Y the observation variable (for instance wind speed). More specifically two problems are addressed: Given a high forecast X=x_0, what is the probability that Y>y? In other words: provide inference on the conditional probability: [ Pr{Y>y|X=x_0}. ] Given a probabilistic model for Problem 1, what is the impact on the verification analysis of extreme events. These problems can be solved with bivariate extremes (Coles, 2001), and the verification analysis in (Ferro, 2007). We apply the Ramos and Ledford (2009) parametric model for bivariate tail estimation of the pair (X,Y). The model accommodates different types of extremal dependence and asymmetry within a parsimonious representation. Results are presented using the ensemble reforecast system of the European Centre of Weather Forecasts (Hagedorn, 2008). Coles, S. (2001) An Introduction to Statistical modelling of Extreme Values. Springer-Verlag.Ferro, C.A.T. (2007) A probability model for verifying deterministic forecasts of extreme events. Wea. Forecasting {22}, 1089-1100.Hagedorn, R. (2008) Using the ECMWF reforecast dataset to calibrate EPS forecasts. ECMWF Newsletter, {117}, 8-13.Ramos, A., Ledford, A. (2009) A new class of models for bivariate joint tails. J.R. Statist. Soc. B {71}, 219-241.

"Analysis of Van Allen Probes lapping data using Radiation Belt Storm Probes Ion Composition Experiment (RBSPICE)"

NASA Astrophysics Data System (ADS)

Gallton, D. A.; Manweiler, J. W.; Gerrard, A. J.; Cravens, T.; Lanzerotti, L. J.; Patterson, J. D.

2017-12-01

The increased frequency of the Van Allen Probes (VAP) lapping events provides a unique opportunity to examine the scaling length and structure of the magnetospheric plasma at microscales. Onboard the probes is the RBSPICE instrument, which is an energetic particle detector capable of observing ions (H+, Hen+, On+) from approximately 7 KeV upwards to values of 1 MeV. Here we provide a correlation analysis of the probes during quiet time lapping events which examines the behavior of the particle populations when the probes are within 1,000 km of separation distance, at a distance greater than 15,000 km from Earth, and where the Kp and AE magnetic indices show minimal geomagnetic activity. The correlation values of the energetic particle distributions are examined and the falloff distances associated with the tail end of the plasma distribution are calculated. We provide an overview of the initial analysis results for H during the quiet time lapping events and a discussion of the causal relationship.

Extreme events in total ozone over Arosa - Part 1: Application of extreme value theory

NASA Astrophysics Data System (ADS)

Rieder, H. E.; Staehelin, J.; Maeder, J. A.; Peter, T.; Ribatet, M.; Davison, A. C.; Stübi, R.; Weihs, P.; Holawe, F.

2010-10-01

In this study ideas from extreme value theory are for the first time applied in the field of stratospheric ozone research, because statistical analysis showed that previously used concepts assuming a Gaussian distribution (e.g. fixed deviations from mean values) of total ozone data do not adequately address the structure of the extremes. We show that statistical extreme value methods are appropriate to identify ozone extremes and to describe the tails of the Arosa (Switzerland) total ozone time series. In order to accommodate the seasonal cycle in total ozone, a daily moving threshold was determined and used, with tools from extreme value theory, to analyse the frequency of days with extreme low (termed ELOs) and high (termed EHOs) total ozone at Arosa. The analysis shows that the Generalized Pareto Distribution (GPD) provides an appropriate model for the frequency distribution of total ozone above or below a mathematically well-defined threshold, thus providing a statistical description of ELOs and EHOs. The results show an increase in ELOs and a decrease in EHOs during the last decades. The fitted model represents the tails of the total ozone data set with high accuracy over the entire range (including absolute monthly minima and maxima), and enables a precise computation of the frequency distribution of ozone mini-holes (using constant thresholds). Analyzing the tails instead of a small fraction of days below constant thresholds provides deeper insight into the time series properties. Fingerprints of dynamical (e.g. ENSO, NAO) and chemical features (e.g. strong polar vortex ozone loss), and major volcanic eruptions, can be identified in the observed frequency of extreme events throughout the time series. Overall the new approach to analysis of extremes provides more information on time series properties and variability than previous approaches that use only monthly averages and/or mini-holes and mini-highs.

Extreme events in total ozone over Arosa - Part 1: Application of extreme value theory

NASA Astrophysics Data System (ADS)

Rieder, H. E.; Staehelin, J.; Maeder, J. A.; Peter, T.; Ribatet, M.; Davison, A. C.; Stübi, R.; Weihs, P.; Holawe, F.

2010-05-01

In this study ideas from extreme value theory are for the first time applied in the field of stratospheric ozone research, because statistical analysis showed that previously used concepts assuming a Gaussian distribution (e.g. fixed deviations from mean values) of total ozone data do not adequately address the structure of the extremes. We show that statistical extreme value methods are appropriate to identify ozone extremes and to describe the tails of the Arosa (Switzerland) total ozone time series. In order to accommodate the seasonal cycle in total ozone, a daily moving threshold was determined and used, with tools from extreme value theory, to analyse the frequency of days with extreme low (termed ELOs) and high (termed EHOs) total ozone at Arosa. The analysis shows that the Generalized Pareto Distribution (GPD) provides an appropriate model for the frequency distribution of total ozone above or below a mathematically well-defined threshold, thus providing a statistical description of ELOs and EHOs. The results show an increase in ELOs and a decrease in EHOs during the last decades. The fitted model represents the tails of the total ozone data set with high accuracy over the entire range (including absolute monthly minima and maxima), and enables a precise computation of the frequency distribution of ozone mini-holes (using constant thresholds). Analyzing the tails instead of a small fraction of days below constant thresholds provides deeper insight into the time series properties. Fingerprints of dynamical (e.g. ENSO, NAO) and chemical features (e.g. strong polar vortex ozone loss), and major volcanic eruptions, can be identified in the observed frequency of extreme events throughout the time series. Overall the new approach to analysis of extremes provides more information on time series properties and variability than previous approaches that use only monthly averages and/or mini-holes and mini-highs.

Morphogenetic changes occurring in the regenerating newt tail under changed gravity conditions

NASA Astrophysics Data System (ADS)

Radugina, Elena A.; Grigoryan, Eleonora N.; Dvorochkin, Natasha; Almeida, Eduardo

2012-07-01

It is widely accepted that gravity greatly affects animal physiology, development, and alters gene expression. Recently it became apparent that it can also affect tissue morphogenesis. In our work, we developed special laboratory conditions that allow us to produce the gravity-dependent alterations in tail regenerates of the newt Pleurodeles waltl. We examined the dynamic morphogenetic changes during 50-day tail regeneration using computer morphometric analysis. Changes that we observed under these conditions were comparable with those found earlier in our spaceflight experiments. The newts kept in aquarium deep water (low g) after 1/3 tail amputation developed normal lanceolate regenerates. In contrast, the animals that stayed on the moist mat (1g) developed tail regenerates curved ventrally, with tips almost touching the mat. The similar results were obtained with a 12-day centrifugation at 2g. The study of the regenerate morphology in low g, 1g, and 2g animal groups allowed us to determine the stage at which the morphological changes in regenerates become apparent, and to detect the main morphological events associated with the development of tail curve, such as bending of ependymal tube and reorientation of the forming cartilage. We describe cellular processes foregoing observed tissue morphogenetic changes, such as cell migration, condensation in cell population, and unequal proliferation in different areas of epidermis and blastema. Cell proliferation in epidermis and blastema of tails regenerated under the conditions of different gravitational load was evaluated by BrdU assay. In 1g newts, cell proliferation increased within the dorso-apical region of the regenerates compared with that in low g group. These results provide us with a valuable insight into the regenerative tissue homostasis that involves cell division, cell death, and migration in the newt regenerating tail. In addition, these findings could provide us with better understanding of the mechanisms mediating morphogenetic response of regenerating tissues to the modified gravity vector.

The origins of multifractality in financial time series and the effect of extreme events

NASA Astrophysics Data System (ADS)

Green, Elena; Hanan, William; Heffernan, Daniel

2014-06-01

This paper presents the results of multifractal testing of two sets of financial data: daily data of the Dow Jones Industrial Average (DJIA) index and minutely data of the Euro Stoxx 50 index. Where multifractal scaling is found, the spectrum of scaling exponents is calculated via Multifractal Detrended Fluctuation Analysis. In both cases, further investigations reveal that the temporal correlations in the data are a more significant source of the multifractal scaling than are the distributions of the returns. It is also shown that the extreme events which make up the heavy tails of the distribution of the Euro Stoxx 50 log returns distort the scaling in the data set. The most extreme events are inimical to the scaling regime. This result is in contrast to previous findings that extreme events contribute to multifractality.

The joint return period analysis of natural disasters based on monitoring and statistical modeling of multidimensional hazard factors.

PubMed

Liu, Xueqin; Li, Ning; Yuan, Shuai; Xu, Ning; Shi, Wenqin; Chen, Weibin

2015-12-15

As a random event, a natural disaster has the complex occurrence mechanism. The comprehensive analysis of multiple hazard factors is important in disaster risk assessment. In order to improve the accuracy of risk analysis and forecasting, the formation mechanism of a disaster should be considered in the analysis and calculation of multi-factors. Based on the consideration of the importance and deficiencies of multivariate analysis of dust storm disasters, 91 severe dust storm disasters in Inner Mongolia from 1990 to 2013 were selected as study cases in the paper. Main hazard factors from 500-hPa atmospheric circulation system, near-surface meteorological system, and underlying surface conditions were selected to simulate and calculate the multidimensional joint return periods. After comparing the simulation results with actual dust storm events in 54years, we found that the two-dimensional Frank Copula function showed the better fitting results at the lower tail of hazard factors and that three-dimensional Frank Copula function displayed the better fitting results at the middle and upper tails of hazard factors. However, for dust storm disasters with the short return period, three-dimensional joint return period simulation shows no obvious advantage. If the return period is longer than 10years, it shows significant advantages in extreme value fitting. Therefore, we suggest the multivariate analysis method may be adopted in forecasting and risk analysis of serious disasters with the longer return period, such as earthquake and tsunami. Furthermore, the exploration of this method laid the foundation for the prediction and warning of other nature disasters. Copyright © 2015 Elsevier B.V. All rights reserved.

Are Vietnam and Chinese stock markets out of the US contagion effect in extreme events?

NASA Astrophysics Data System (ADS)

Nguyen, Cuong; Ishaq Bhatti, M.; Henry, Darren

2017-08-01

This paper employs Chi-plots, Kendall (K)-plots and three different copula functions to empirically examine the tail dependence between the US stock market and stock markets in Vietnam and China in order to test contagion effects pre- and post- the US subprime mortgage crisis. The results based on data between 2003 and 2011 indicate the presence of left tail dependence before and after the crisis suggesting no change in dependence structure, but there exists stronger left tail dependence between the US and Vietnam stock markets. It is observed that the US and Vietnam stock markets are more prone to crashing than booming together. For the Chinese market, the US and Shanghai stock markets exhibit left tail dependence before the crisis, but no evidence of post-crisis tail dependency. On the contrary, the Shenzhen stock market is independent of the US market before and after the crisis which implies that an extreme event in the US market is less likely to influence the Shenzhen stock market. This suggests that there is significant potential for risk diversification by investing in the Shenzhen market by US investors after the financial crisis. These results have not been documented in the existing literature and provide a new insight into risk diversification between the two important Asian emerging stock markets.

Energetic electron injections and dipolarization events in Mercury's magnetotail: Substorm dynamics

NASA Astrophysics Data System (ADS)

Dewey, R. M.; Slavin, J. A.; Raines, J. M.; Imber, S.; Baker, D. N.; Lawrence, D. J.

2017-12-01

Despite its small size, Mercury's terrestrial-like magnetosphere experiences brief, yet intense, substorm intervals characterized by features similar to at Earth: loading/unloading of the tail lobes with open magnetic flux, dipolarization of the magnetic field at the inner edge of the plasma sheet, and, the focus of this presentation, energetic electron injection. We use the Gamma-Ray Spectrometer's high-time resolution (10 ms) energetic electron measurements to determine the relationship between substorm activity and energetic electron injections coincident with dipolarization fronts in the magnetotail. These dipolarizations were detected on the basis of their rapid ( 2 s) increase in the northward component of the tail magnetic field (ΔBz 30 nT), which typically persists for 10 s. We estimate the typical flow channel to be 0.15 RM, planetary convection speed of 750 km/s, cross-tail potential drop of 7 kV, and flux transport of 0.08 MWb for each dipolarization event, suggesting multiple simultaneous and sequential dipolarizations are required to unload the >1 MWb of magnetic flux typically returned to the dayside magnetosphere during a substorm interval. Indeed, while we observe most dipolarization-injections to be isolated or in small chains of events (i.e., 1-3 events), intervals of sawtooth-like injections with >20 sequential events are also present. The typical separation between dipolarization-injection events is 10 s. Magnetotail dipolarization, in addition to being a powerful source of electron acceleration, also plays a significant role in the substorm process at Mercury.

The conformation of the histone H3 tail inhibits association of the BPTF PHD finger with the nucleosome

PubMed Central

Morrison, Emma A; Bowerman, Samuel; Sylvers, Kelli L

2018-01-01

Histone tails harbor a plethora of post-translational modifications that direct the function of chromatin regulators, which recognize them through effector domains. Effector domain/histone interactions have been broadly studied, but largely using peptide fragments of histone tails. Here, we extend these studies into the nucleosome context and find that the conformation adopted by the histone H3 tails is inhibitory to BPTF PHD finger binding. Using NMR spectroscopy and MD simulations, we show that the H3 tails interact robustly but dynamically with nucleosomal DNA, substantially reducing PHD finger association. Altering the electrostatics of the H3 tail via modification or mutation increases accessibility to the PHD finger, indicating that PTM crosstalk can regulate effector domain binding by altering nucleosome conformation. Together, our results demonstrate that the nucleosome context has a dramatic impact on signaling events at the histone tails, and highlights the importance of studying histone binding in the context of the nucleosome. PMID:29648537

Indicators of positive and negative emotions and emotional contagion in pigs.

PubMed

Reimert, Inonge; Bolhuis, J Elizabeth; Kemp, Bas; Rodenburg, T Bas

2013-01-17

For the welfare of group-housed animals, such as pigs, the emotional state of an individual pig is relevant, but also the extent to which pen mates are affected by the distress or pleasure of other individuals, i.e. emotional contagion, a simple form of empathy. Therefore, indicators of positive and negative emotions were investigated in pigs during anticipation and experience of a rewarding (access in pairs to a compartment with straw, peat and chocolate raisins) or aversive (social isolation combined with negative, unpredictable interventions) event. Thereafter the same indicators were investigated in naive pigs during anticipation and experience of a rewarding or aversive event by their trained pen mates. Positive emotions could be indicated by play, barks and tail movements, while negative emotions could be indicated by freezing, defecating, urinating, escape attempts, high-pitched vocalizations (screams, squeals or grunt-squeals), tail low, ears back and ear movements. Salivary cortisol measurements supported these behavioral observations. During anticipation of the aversive event, naive pigs tended to show more tail low. During the aversive event, naive pigs tended to defecate more, while they played more during the rewarding event. These results suggest that pigs might be sensitive to emotional contagion, which could have implications for the welfare of group-housed pigs. Pig emotions and the process of emotional contagion merit, therefore, further research. Copyright © 2012 Elsevier Inc. All rights reserved.

Assessment of butorphanol-azaperone-medetomidine combination as anesthesia for semen collection and evaluation of semen quality in white-tailed deer (Odocoileus virginianus).

PubMed

Kirschner, S M; Rodenkirch, R

2017-09-01

The aim of this current study was to evaluate the level of anesthesia produced by a combination of butorphanol-azaperone-medetomidine (BAM) for semen collection by electroejaculation on captive white-tailed bucks (Odocoileus virginianus). Ten male white-tailed deer, weighing 68.2-115.9kg, ranging in age from one to four years were randomly selected from housing pens and anesthetized with the BAM drug combination at a dose volume of 2.0mL each. Semen was collected from each animal using a standard cervid electroejaculation protocol while under BAM anesthesia. Physiological data was recorded following induction of anesthesia and during semen collection. Collected ejaculates were prepared for analysis using a standard extender protocol for cryopreservation. Eleven sperm viability parameters were quantified for each sample using a Computerized Assisted Sperm Analysis system, including total seminal volume; sperm concentration and total sperm number. kinematic parameters of motile spermatozoa were also assessed. Results demonstrated that BAM provided an effective plane of anesthesia for successful collection of viable sperm. Measured physiological variables of heart rate, respiration and body temperature all remained within safe, normal limits. Data recorded on semen characteristics from all collected ejaculates correlated well with key traits determined to be important for successful fertilization through measurement of total semen volume; sperm concentration; total sperm number; and kinematic parameters of motile spermatozoa. There were no serious adverse events. This field study indicates that BAM anesthesia is suitable for semen collection in white-tailed deer. Copyright © 2017 Elsevier B.V. All rights reserved.

Mutational jackpot events generate effective frequency-dependent selection in adapting populations

NASA Astrophysics Data System (ADS)

Hallatschek, Oskar

The site-frequency spectrum is one the most easily measurable quantities that characterize the genetic diversity of a population. While most neutral models predict that site frequency spectra should decay with increasing frequency, a high-frequency uptick has been reported in many populations. Anomalies in the high-frequency tail are particularly unsettling because the highest frequencies can be measured with greatest accuracy. Here, we show that an uptick in the spectrum of neutral mutations generally arises when mutant frequencies are dominated by rare jackpot events, mutational events with large descendant numbers. This leads to an effective pattern of frequency-dependent selection (or unstable internal equilibrium at one half frequency) that causes an accumulation of high-frequency polymorphic sites. We reproduce the known uptick occurring for recurrent hitchhiking (genetic draft) as well as rapid adaptation, and (in the future) generalize the shape of the high-frequency tail to other scenarios that are dominated by jackpot events, such as frequent range expansions. We also tackle (in the future) the inverse approach to use the high-frequency uptick for learning about the tail of the offspring number distribution. Positively selected alleles need to surpass, typically, an u NSF Career Award (PoLS), NIH NIGMS R01, Simons Foundation.

When Siberia came to the Netherlands: The response of continental black-tailed godwits to a rare spring weather event

USGS Publications Warehouse

Senner, Nathan R.; Verhoeven, Mo A.; Abad-Gómez, José M.; Gutiérrez, Jorge S.; Hooijmeijer, Jos C. E. W.; Kentie, Rosemarie; Masero, José A.; Tibbitts, T. Lee; Piersma, Theunis

2015-01-01

This suggests that populations with continued access to food, behavioural flexibility and time to dissipate the costs of the event can likely withstand the consequences of an extreme weather event. For populations constrained in one of these respects, though, extreme events may entail extreme ecological consequences.

In the absence of its cytosolic domain, the CD28 molecule still contributes to T cell activation

PubMed Central

Morin, Stéphanie; Giroux, Valentin; Favre, Cédric; Bechah, Yassina; Auphan-Anezin, Nathalie; Roncagalli, Romain; Mège, Jean-Louis; Olive, Daniel; Malissen, Marie; Nunes, Jacques

2015-01-01

The CD28 costimulatory receptor has a pivotal role in T cell biology as this molecule amplifies T cell receptor (TCR) signals to provide an efficient immune T cell response. There is a large debate about how CD28 mediates these signals. Here, we designed a CD28 gene targeted knock-in mouse strain lacking the cytoplasmic tail of CD28. As is the case in CD28-deficient (CD28 knock-out) mice, regulatory T cell homeostasis and T cell activation are altered in these CD28 knock-in mice. Unexpectedly, the presence of a CD28 molecule deprived of its cytoplasmic tail could partially induce some early activation events in T cells such as signaling events or expression of early activation markers. These results unravel a new mechanism of T cell costimulation by CD28, independent of its cytoplasmic tail. PMID:25725801

Fluvial transport and surface enrichment of arsenic in semi-arid mining regions: examples from the Mojave Desert, California.

PubMed

Kim, Christopher S; Stack, David H; Rytuba, James J

2012-07-01

As a result of extensive gold and silver mining in the Mojave Desert, southern California, mine wastes and tailings containing highly elevated arsenic (As) concentrations remain exposed at a number of former mining sites. Decades of weathering and erosion have contributed to the mobilization of As-enriched tailings, which now contaminate surrounding communities. Fluvial transport plays an intermittent yet important and relatively undocumented role in the migration and dispersal of As-contaminated mine wastes in semi-arid climates. Assessing the contribution of fluvial systems to tailings mobilization is critical in order to assess the distribution and long-term exposure potential of tailings in a mining-impacted environment. Extensive sampling, chemical analysis, and geospatial mapping of dry streambed (wash) sediments, tailings piles, alluvial fans, and rainwater runoff at multiple mine sites have aided the development of a conceptual model to explain the fluvial migration of mine wastes in semi-arid climates. Intense and episodic precipitation events mobilize mine wastes downstream and downslope as a series of discrete pulses, causing dispersion both down and lateral to washes with exponential decay behavior as distance from the source increases. Accordingly a quantitative model of arsenic concentrations in wash sediments, represented as a series of overlapping exponential power-law decay curves, results in the acceptable reproducibility of observed arsenic concentration patterns. Such a model can be transferable to other abandoned mine lands as a predictive tool for monitoring the fate and transport of arsenic and related contaminants in similar settings. Effective remediation of contaminated mine wastes in a semi-arid environment requires addressing concurrent changes in the amounts of potential tailings released through fluvial processes and the transport capacity of a wash.

Fluvial transport and surface enrichment of arsenic in semi-arid mining regions: examples from the Mojave Desert, California

USGS Publications Warehouse

Kim, Christopher S.; Slack, David H.; Rytuba, James J.

2012-01-01

As a result of extensive gold and silver mining in the Mojave Desert, southern California, mine wastes and tailings containing highly elevated arsenic (As) concentrations remain exposed at a number of former mining sites. Decades of weathering and erosion have contributed to the mobilization of As-enriched tailings, which now contaminate surrounding communities. Fluvial transport plays an intermittent yet important and relatively undocumented role in the migration and dispersal of As-contaminated mine wastes in semi-arid climates. Assessing the contribution of fluvial systems to tailings mobilization is critical in order to assess the distribution and long-term exposure potential of tailings in a mining-impacted environment. Extensive sampling, chemical analysis, and geospatial mapping of dry streambed (wash) sediments, tailings piles, alluvial fans, and rainwater runoff at multiple mine sites have aided the development of a conceptual model to explain the fluvial migration of mine wastes in semi-arid climates. Intense and episodic precipitation events mobilize mine wastes downstream and downslope as a series of discrete pulses, causing dispersion both down and lateral to washes with exponential decay behavior as distance from the source increases. Accordingly a quantitative model of arsenic concentrations in wash sediments, represented as a series of overlapping exponential power-law decay curves, results in the acceptable reproducibility of observed arsenic concentration patterns. Such a model can be transferable to other abandoned mine lands as a predictive tool for monitoring the fate and transport of arsenic and related contaminants in similar settings. Effective remediation of contaminated mine wastes in a semi-arid environment requires addressing concurrent changes in the amounts of potential tailings released through fluvial processes and the transport capacity of a wash.

A Black Swan and Sub-continental Scale Dynamics in Humid, Late-Holocene Broadleaf Forests

NASA Astrophysics Data System (ADS)

Pederson, N.; Dyer, J.; McEwan, R.; Hessl, A. E.; Mock, C. J.; Orwig, D.; Rieder, H. E.; Cook, B. I.

2012-12-01

In humid regions with dense broadleaf-dominated forests where gap-dynamics is the prevailing disturbance regime, paleoecological evidence shows regional-scale changes in forest composition associated with climatic change. To investigate the potential for regional events in late-Holocene forests, we use tree-ring data from 76 populations covering 840,000 km2 and 5.3k tree recruitment dates spanning 1.4 million km2 in the eastern US to investigate the occurrence of simultaneous forest dynamics across a humid region. We compare regional forest dynamics with an independent set of annually-resolved tree ring record of hydroclimate to examine whether climate dynamics might drive forest dynamics in this humid region. In forests where light availability is an important limitation for tree recruitment, we document a pulse of tree recruitment during the mid- to late-1600s across the eastern US. This pulse, which can be inferred as large-scale canopy opening, occurred during an era that multiple proxies indicate as extended drought between two intense pluvial. Principal component analysis of the 76 populations indicates a step-change increase in average ring width during the late-1770s resembling a potential canopy accession event over 42,800 km2 of the southeastern US. Growth-release analysis of populations loading strongly on this eigenvector indicates severe canopy disturbance from 1775-1779 that peaked in 1776. The 1776 event follows a period with extended droughts and severe large-scale frost event. We hypothesize these climatic events lead to elevated tree mortality in the late-1770s and canopy accession for understory trees. Superposed epoch analysis reveals that spikes of elevated canopy disturbance from 1685-1850 CE are significantly associated with drought. Extreme value theory statistics indicates the 1776 event lies beyond the 99.9 quantile and nearly 7 sigmas above the 1685-1850 mean rate of disturbance. The time-series of canopy disturbance from 1685-1850 is so poorly described by a Gaussian distribution that it can be considered 'heavy tailed'. Preliminary results show that disturbance events that affect >3-5% of the trees in our dataset occur approximately every 200 years. The most extreme rates (>5%) occur approximately every 500-1000 years. These statistics indicate that the 1775-1779 heavy-tail event can also be considered a 'Black Swan', the rare event that has the potential to alter a system's trajectory further than common events. Our results challenge traditional views regarding characteristic disturbance regime in humid temperate forests, and speak to the importance of punctuated climatic events in shaping forest structure for centuries. Such an understanding is critical given the potential of more frequent extreme climatic events in the future.

Observations of Halley's Comet by the Solar Maximum Mission (SMM)

NASA Technical Reports Server (NTRS)

Niedner, M. B.

1986-01-01

Solar Maximum Mission coronagraph/polarimeter observations of large scale phenomena in Halley's Comet are discussed. Observations of the hydrogen coma with the UV spectrometer are considered. It is concluded that coronograph/polarimeter observations of the disconnection event, in which the entire plasma tail uproots itself from the head of the comet, is convected away in the solar wind at speeds in the 50 to 100 km/sec range (relative to the head), and is replaced by a plasma tail constructed from folding ion-tail rays, are the most interesting.

Risk analysis of chemical, biological, or radionuclear threats: implications for food security.

PubMed

Mohtadi, Hamid; Murshid, Antu Panini

2009-09-01

If the food sector is attacked, the likely agents will be chemical, biological, or radionuclear (CBRN). We compiled a database of international terrorist/criminal activity involving such agents. Based on these data, we calculate the likelihood of a catastrophic event using extreme value methods. At the present, the probability of an event leading to 5,000 casualties (fatalities and injuries) is between 0.1 and 0.3. However, pronounced, nonstationary patterns within our data suggest that the "reoccurrence period" for such attacks is decreasing every year. Similarly, disturbing trends are evident in a broader data set, which is nonspecific as to the methods or means of attack. While at the present the likelihood of CBRN events is quite low, given an attack, the probability that it involves CBRN agents increases with the number of casualties. This is consistent with evidence of "heavy tails" in the distribution of casualties arising from CBRN events.

Proteomic Analysis Reveals the Contribution of TGFβ/Smad4 Signaling Pathway to Cell Differentiation During Planarian Tail Regeneration.

PubMed

Chen, Xiaoguang; Xu, Cunshuan

2017-06-01

After planarian tail is cut off, posterior end of the remaining fragment will regenerate a new tail within about 1 week. However, many details of this process remain unclear up to date. For this reason, we performed the dynamic proteomic analysis of the regenerating tail fragments at 6, 12, 24, 72, 120, and 168 h post-amputation (hpa). Using two-dimensional electrophoresis (2-DE) in combination with MALDI-TOF-TOF/MS analysis, a total of 1088 peptides were identified as significantly changed between tail-cutting groups and 0-h group, 482 of which have identifiable protein names. Of these 482 proteins, there were 111 originating from the Turbellaria. Protein functional categorization showed that these 111 proteins are mainly related to differentiation and development, transcription and translation, cell signal transduction, and cell proliferation. The screening of key protein considered the transcription factor Smad4 as important protein for planarian tail regeneration. Cell signaling pathway analysis, combined with proteomic profiling of regenerating tail fragment, showed that TGFβ/Smad4 pathway was activated during planarian tail regeneration. Based on a comprehensive analysis of 2-DE MALDI-TOF-TOF/MS and bioinformatics analyses, it could be concluded that TGFβ/Smad4 pathway perhaps plays an important role in tail regeneration via promoting cell differentiation.

Plasma-tail activity at the time of the Vega encounters

NASA Technical Reports Server (NTRS)

Niedner, Malcolm B., Jr.; Schwingensuch, Konrad

1986-01-01

Physical associations are sought between Halley's plasma tail activity seen in ground-based imagery and near-comet, solar wind/IMF measurements obtained by the Vega spacecraft. Disconnection Events (DE's) and the sector boundary/frontside magnetic reconnection model (Niedner and Brandt, 1978) of their origin are discussed. Strong support for the model comes from 2 DE's: a major event whose onset, on March 7 to 8, is strongly correlated with a reversal of the comet's magnetic barrier observed by Vega-1 and Vega-2 and with an IMF sector boundary observed by Vega-1; and a minor event on March 7 which may be associated with the two-polarity (possibly reconnecting) magnetic barrier seen by Vega-1 on March 6, when the solar-wind density was low.

On the Role of Ionospheric Ions in Sawtooth Events

NASA Astrophysics Data System (ADS)

Lund, E. J.; Nowrouzi, N.; Kistler, L. M.; Cai, X.; Frey, H. U.

2018-01-01

Simulations have suggested that feedback of heavy ions originating in the ionosphere is an important mechanism for driving sawtooth injections. However, this feedback may only be necessary for events driven by coronal mass ejections (CMEs), whereas in events driven by streaming interaction regions (SIRs), solar wind variability may suffice to drive these injections. Here we present case studies of two sawtooth events for which in situ data are available in both the magnetotail (Cluster) and the nightside auroral region (FAST), as well as global auroral images (IMAGE). One event, on 1 October 2001, was driven by a CME; the other, on 24 October 2002, was driven by an SIR. The available data do not support the hypothesis that heavy ion feedback is necessary to drive either event. This result is consistent with simulations of the SIR-driven event but disagrees with simulation results for a different CME-driven event. We also find that in an overwhelming majority of the sawtooth injections for which Cluster tail data are available, the O+ observed in the tail comes from the cusp rather than the nightside auroral region, which further casts doubt on the hypothesis that ionospheric heavy ion feedback is the cause of sawtooth injections.

Phylogenetic and pathogenic characterization of novel adenoviruses from long-tailed ducks (Clangula hyemalis)

USGS Publications Warehouse

Counihan, Katrina; Skerratt, Lee; Franson, J. Christian; Hollmen, Tuula E.

2015-01-01

Novel adenoviruses were isolated from a long-tailed duck (Clangula hyemalis) mortality event near Prudhoe Bay, Alaska in 2000. The long-tailed duck adenovirus genome was approximately 27 kb. A 907 bp hexon gene segment was used to design primers specific for the long-tailed duck adenovirus. Nineteen isolates were phylogenetically characterized based on portions of their hexon gene and 12 were most closely related to Goose adenovirus A. The remaining 7 shared no hexon sequences with any known adenoviruses. Experimental infections of mallards with a long-tailed duck reference adenovirus caused mild lymphoid infiltration of the intestine and paint brush hemorrhages of the mucosa and dilation of the intestine. This study shows novel adenoviruses from long-tailed ducks are diverse and provides further evidence that they should be considered in cases of morbidity and mortality in sea ducks. Conserved and specific primers have been developed that will help screen sea ducks for adenoviral infections.

Analysis of the tail structures of comet P/Halley 1910 II

NASA Astrophysics Data System (ADS)

Voelzke, Marcos Rincon; Izaguirre, Liberdade

2012-07-01

Eight hundred and eighty six images from September 1909 to May 1911 are analysed for the purpose of identifying, measuring and correlating the morphological structures along the plasma tail of P/Halley. These images are from the Atlas of Comet Halley 1910 II (Donn et al., 1986). A systematic visual analysis revealed 304 wavy structures along the main tail and 164 along the secondary tails, 41 solitary waves (solitons), 13 Swan-like tails, 26 disconnection events (DEs), 166 knots (regions of higher density of matter) and six shells. While the wavy structures denote undulations or a train of waves, the solitons refer to the formations usually denominated kinks. In general, it is possible to associate the occurrence of a DE and/or a Swan-Tail with the occurrence of a knot, but the last one may occur independently. It is also possible to say that the solitons occur in association with the wavy structures, but the reverse is not true. The 26 DEs documented in 26 different images allowed the derivation of two onsets of DEs (Table 1), i.e., the time when the comet supposedly crossed a frontier between magnetic sectors of the solar wind (Brandt and Snow, 2000). Both onsets of DEs were determined after the perihelion passage with an average of the corrected velocities Vc equal to (57 ± 15) km/s. The mean value of the corrected wavelength c measured in 70 different wavy structures is equal to (1.7 ± 0.1) x 10^6 km and the mean amplitude A of the wave (measured in the same 70 wavy structures cited above) is equal to (1.4 ± 0.1) x 10^5 km. The mean value of the corrected cometocentric phase velocity Vpc measured in 20 different wavy structures is equal to (168 ± 28) km/s. The average value of the corrected velocities Vkc of the knots measured in 36 different images is equal to (128 ± 12) km/s. There is a tendancy for A and c to increase with increasing cometocentric distance. The results of this work agree with the earlier research from Voelzke and Matsuura (1998), which analysed comet P/Halley's tail structures in its last apparition in 1986.

Morphological analysis of the tail structures of comet P/Halley 1910 II

NASA Astrophysics Data System (ADS)

Voelzke, M. R.; Izaguirre, L. S.

2012-05-01

For the purpose of identifying, measuring and correlating the morphological structures along the plasma tail of P/Halley 886 images from September 1909 to May 1911 are analysed. These images are from the Atlas of Comet Halley 1910 II (Donn et al., 1986). A systematic visual analysis revealed 304 wavy structures along the main tail and 164 along the secondary tails, 41 solitary waves (solitons), 13 Swan-like tails, 26 disconnection events (DEs), 166 knots (regions of higher density of matter) and six shells. While the wavy structures denote undulations or a train of waves, the solitons refer to the formations usually denominated as kinks. In general, it is possible to associate the occurrence of a DE and/or a Swan-Tail with the occurrence of a knot, but the last one may occur independently. It is also possible to say that the solitons occur in association with the wavy structures, but the reverse is not true. The 26 DEs documented in 26 different images allowed the derivation of two onsets of DEs (Table 1), i.e., the time when the comet supposedly crossed a frontier between magnetic sectors of the solar wind (Brandt and Snow, 2000). Both onsets of DEs were determined after the perihelion passage with an average of the corrected velocities Vc equal to (57±15) km s-1. The mean value of the corrected wavelength λc measured in 70 different wavy structures is equal to (1.7±0.1)×106 km and the mean amplitude A of the wave (measured in the same 70 wavy structures cited above) is equal to (1.4±0.1)×105 km. The mean value of the corrected cometocentric phase velocity Vpc measured in 20 different wavy structures is equal to (168±28) km s-1. The average value of the corrected velocities Vkc of the knots measured in 36 different images is equal to (128±12) km s-1. There is a tendency for A and λc to increase with increasing cometocentric distance. The results of this work agree with the earlier research from Voelzke and Matsuura (1998), which analysed comet P/Halley's tail structures in its last apparition in 1986.

Elk River Watershed - Flood Study

NASA Astrophysics Data System (ADS)

Barnes, C. C.; Byrne, J. M.; MacDonald, R. J.; Lewis, D.

2014-12-01

Flooding has the potential to cause significant impacts to economic activities as well as to disrupt or displace populations. Changing climate regimes such as extreme precipitation events increase flood vulnerability and put additional stresses on infrastructure. Potential flooding from just under 100 (2009 NPRI Reviewed Facility Data Release, Environment Canada) toxic tailings ponds located in Canada increase risk to human safety and the environment. One such geotechnical failure spilt billions of litres of toxic tailings into the Fraser River watershed, British Columbia, when a tailings pond dam breach occurred in August 2014. Damaged and washed out roadways cut access to essential services as seen by the extensive floods that occurred in Saskatchewan and Manitoba in July 2014, and in Southern Alberta in 2013. Recovery efforts from events such as these can be lengthy, and have substantial social and economic impacts both in loss of revenue and cost of repair. The objective of this study is to investigate existing conditions in the Elk River watershed and model potential future hydrological changes that can increase flood risk hazards. By analyzing existing hydrology, meteorology, land cover, land use, economic, and settlement patterns a baseline is established for existing conditions in the Elk River watershed. Coupling the Generate Earth Systems Science (GENESYS) high-resolution spatial hydrometeorological model with flood hazard analysis methodology, high-resolution flood vulnerability base line maps are created using historical climate conditions. Further work in 2015 will examine possible impacts for a range of climate change and land use change scenarios to define changes to future flood risk and vulnerability.

Wave-height hazard analysis in Eastern Coast of Spain - Bayesian approach using generalized Pareto distribution

NASA Astrophysics Data System (ADS)

Egozcue, J. J.; Pawlowsky-Glahn, V.; Ortego, M. I.

2005-03-01

Standard practice of wave-height hazard analysis often pays little attention to the uncertainty of assessed return periods and occurrence probabilities. This fact favors the opinion that, when large events happen, the hazard assessment should change accordingly. However, uncertainty of the hazard estimates is normally able to hide the effect of those large events. This is illustrated using data from the Mediterranean coast of Spain, where the last years have been extremely disastrous. Thus, it is possible to compare the hazard assessment based on data previous to those years with the analysis including them. With our approach, no significant change is detected when the statistical uncertainty is taken into account. The hazard analysis is carried out with a standard model. Time-occurrence of events is assumed Poisson distributed. The wave-height of each event is modelled as a random variable which upper tail follows a Generalized Pareto Distribution (GPD). Moreover, wave-heights are assumed independent from event to event and also independent of their occurrence in time. A threshold for excesses is assessed empirically. The other three parameters (Poisson rate, shape and scale parameters of GPD) are jointly estimated using Bayes' theorem. Prior distribution accounts for physical features of ocean waves in the Mediterranean sea and experience with these phenomena. Posterior distribution of the parameters allows to obtain posterior distributions of other derived parameters like occurrence probabilities and return periods. Predictives are also available. Computations are carried out using the program BGPE v2.0.

Emergence of bursts and communities in evolving weighted networks.

PubMed

Jo, Hang-Hyun; Pan, Raj Kumar; Kaski, Kimmo

2011-01-01

Understanding the patterns of human dynamics and social interaction and the way they lead to the formation of an organized and functional society are important issues especially for techno-social development. Addressing these issues of social networks has recently become possible through large scale data analysis of mobile phone call records, which has revealed the existence of modular or community structure with many links between nodes of the same community and relatively few links between nodes of different communities. The weights of links, e.g., the number of calls between two users, and the network topology are found correlated such that intra-community links are stronger compared to the weak inter-community links. This feature is known as Granovetter's "The strength of weak ties" hypothesis. In addition to this inhomogeneous community structure, the temporal patterns of human dynamics turn out to be inhomogeneous or bursty, characterized by the heavy tailed distribution of time interval between two consecutive events, i.e., inter-event time. In this paper, we study how the community structure and the bursty dynamics emerge together in a simple evolving weighted network model. The principal mechanisms behind these patterns are social interaction by cyclic closure, i.e., links to friends of friends and the focal closure, links to individuals sharing similar attributes or interests, and human dynamics by task handling process. These three mechanisms have been implemented as a network model with local attachment, global attachment, and priority-based queuing processes. By comprehensive numerical simulations we show that the interplay of these mechanisms leads to the emergence of heavy tailed inter-event time distribution and the evolution of Granovetter-type community structure. Moreover, the numerical results are found to be in qualitative agreement with empirical analysis results from mobile phone call dataset.

Heavy-tailed distribution of the SSH Brute-force attack duration in a multi-user environment

NASA Astrophysics Data System (ADS)

Lee, Jae-Kook; Kim, Sung-Jun; Park, Chan Yeol; Hong, Taeyoung; Chae, Huiseung

2016-07-01

Quite a number of cyber-attacks to be place against supercomputers that provide highperformance computing (HPC) services to public researcher. Particularly, although the secure shell protocol (SSH) brute-force attack is one of the traditional attack methods, it is still being used. Because stealth attacks that feign regular access may occur, they are even harder to detect. In this paper, we introduce methods to detect SSH brute-force attacks by analyzing the server's unsuccessful access logs and the firewall's drop events in a multi-user environment. Then, we analyze the durations of the SSH brute-force attacks that are detected by applying these methods. The results of an analysis of about 10 thousands attack source IP addresses show that the behaviors of abnormal users using SSH brute-force attacks are based on human dynamic characteristics of a typical heavy-tailed distribution.

Asymmetry of projected increases in extreme temperature distributions

PubMed Central

Kodra, Evan; Ganguly, Auroop R.

2014-01-01

A statistical analysis reveals projections of consistently larger increases in the highest percentiles of summer and winter temperature maxima and minima versus the respective lowest percentiles, resulting in a wider range of temperature extremes in the future. These asymmetric changes in tail distributions of temperature appear robust when explored through 14 CMIP5 climate models and three reanalysis datasets. Asymmetry of projected increases in temperature extremes generalizes widely. Magnitude of the projected asymmetry depends significantly on region, season, land-ocean contrast, and climate model variability as well as whether the extremes of consideration are seasonal minima or maxima events. An assessment of potential physical mechanisms provides support for asymmetric tail increases and hence wider temperature extremes ranges, especially for northern winter extremes. These results offer statistically grounded perspectives on projected changes in the IPCC-recommended extremes indices relevant for impacts and adaptation studies. PMID:25073751

Contact Time in Random Walk and Random Waypoint: Dichotomy in Tail Distribution

NASA Astrophysics Data System (ADS)

Zhao, Chen; Sichitiu, Mihail L.

Contact time (or link duration) is a fundamental factor that affects performance in Mobile Ad Hoc Networks. Previous research on theoretical analysis of contact time distribution for random walk models (RW) assume that the contact events can be modeled as either consecutive random walks or direct traversals, which are two extreme cases of random walk, thus with two different conclusions. In this paper we conduct a comprehensive research on this topic in the hope of bridging the gap between the two extremes. The conclusions from the two extreme cases will result in a power-law or exponential tail in the contact time distribution, respectively. However, we show that the actual distribution will vary between the two extremes: a power-law-sub-exponential dichotomy, whose transition point depends on the average flight duration. Through simulation results we show that such conclusion also applies to random waypoint.

Radiation Belt Electron Energy Spectra Characterization and Evolution Based on the Van Allen Probes Measurements

NASA Astrophysics Data System (ADS)

Zhao, H.; Baker, D. N.; Jaynes, A. N.; Li, X.; Kanekal, S. G.; Blum, L. W.; Schiller, Q. A.; Leonard, T. W.; Elkington, S. R.

2017-12-01

The electron energy spectra, as an important characteristic of radiation belt electrons, provide valuable information on the physical mechanisms affecting different electron populations. Based on the measurements of 30 keV - 10 MeV electrons from MagEIS and REPT instruments on the Van Allen Probes, case studies and statistical analysis of the radiation belt electron energy spectra characterization and evolution have been performed. Generally the radiation belt electron energy spectra can be represented by one of the three types of distributions: exponential, power law, and bump-on-tail. Statistical analysis shows that the exponential spectra are usually dominant in the outer radiation belt; as the geomagnetic storms occur, energy spectra in the outer belt soften at first due to injection of lower-energy electrons and loss of higher-energy electrons, and gradually get harder due to loss of lower-energy electrons and delayed enhancement of higher energy electron fluxes. Power law spectra generally dominate the inner belt and higher L region (L>6) during injections. Bump-on-tail spectra commonly exist inside the plasmasphere following the geomagnetic storms and/or the compression of plasmasphere, while the energy of flux maxima is usually 1.8 MeV as the bump-on-tail spectra form and gradually moves to higher energies as the spectra evolve, with the ratio of flux maxima to minima up to >10. Detailed event study indicates that the appearance of bump-on-tail spectra are mainly due to energy-dependent losses caused by the plasmaspheric hiss wave scattering, while the disappearance of these spectra can be attributed to fast flux enhancements of lower-energy electrons during storms.

In Vivo Assessment of Protease Dynamics in Cutaneous Wound Healing by Degradomics Analysis of Porcine Wound Exudates*

PubMed Central

Sabino, Fabio; Hermes, Olivia; Egli, Fabian E.; Kockmann, Tobias; Schlage, Pascal; Croizat, Pierre; Kizhakkedathu, Jayachandran N.; Smola, Hans; auf dem Keller, Ulrich

2015-01-01

Proteases control complex tissue responses by modulating inflammation, cell proliferation and migration, and matrix remodeling. All these processes are orchestrated in cutaneous wound healing to restore the skin's barrier function upon injury. Altered protease activity has been implicated in the pathogenesis of healing impairments, and proteases are important targets in diagnosis and therapy of this pathology. Global assessment of proteolysis at critical turning points after injury will define crucial events in acute healing that might be disturbed in healing disorders. As optimal biospecimens, wound exudates contain an ideal proteome to detect extracellular proteolytic events, are noninvasively accessible, and can be collected at multiple time points along the healing process from the same wound in the clinics. In this study, we applied multiplexed Terminal Amine Isotopic Labeling of Substrates (TAILS) to globally assess proteolysis in early phases of cutaneous wound healing. By quantitative analysis of proteins and protein N termini in wound fluids from a clinically relevant pig wound model, we identified more than 650 proteins and discerned major healing phases through distinctive abundance clustering of markers of inflammation, granulation tissue formation, and re-epithelialization. TAILS revealed a high degree of proteolysis at all time points after injury by detecting almost 1300 N-terminal peptides in ∼450 proteins. Quantitative positional proteomics mapped pivotal interdependent processing events in the blood coagulation and complement cascades, temporally discerned clotting and fibrinolysis during the healing process, and detected processing of complement C3 at distinct time points after wounding and by different proteases. Exploiting data on primary cleavage specificities, we related candidate proteases to cleavage events and revealed processing of the integrin adapter protein kindlin-3 by caspase-3, generating new hypotheses for protease-substrate relations in the healing skin wound in vivo. The data have been deposited to the ProteomeXchange Consortium with identifier PXD001198. PMID:25516628

Dragon-Kings, Black-Swans and Prediction (Invited)

NASA Astrophysics Data System (ADS)

Sornette, D.

2010-12-01

Extreme fluctuations or events are often associated with power law statistics. Indeed, it is a popular belief that "wild randomness'' is deeply associated with distributions with power law tails characterized by small exponents. In other words, power law tails are often seen as the epitome of extreme events (the "Black Swan'' story). Here, we document in very different systems that there is life beyond power law tails: power laws can be superseded by "dragon-kings'', monster events that occur beyond (or changing) the power law tail. Dragon-kings reveal hidden mechanisms that are only transiently active and that amplify the normal fluctuations (often described by the power laws of the normal regime). The goal of this lecture is to catalyze the interest of the community of geophysicists across all fields of geosciences so that the "invisible gorilla" fallacy may be avoided. Our own research illustrates that new statistics or representation of data are often necessary to identify dragon-kings, with strategies guided by the underlying mechanisms. Paradoxically, the monsters may be ignored or hidden by the use of inappropriate analysis or statistical tools that amount to cut a mamooth in small pieces, so as to lead to the incorrect belief that only mice exist. In order to stimulate further research, we will document and discuss the dragon-king phenomenon on the statistics of financial losses, economic geography, hydrodynamic turbulence, mechanical ruptures, avalanches in complex heterogeneous media, earthquakes, and epileptic seizures. The special status of dragon-kings open a new research program on their predictability, based on the fact that they belong to a different class of their own and express specific mechanisms amplifying the normal dynamics via positive feedbacks. We will present evidence of these claims for the predictions of material rupture, financial crashes and epileptic seizures. As a bonus, a few remarks will be offered at the end on how the dragon-king phenomenon allows us to understand the present World financial crisis as underpinned in two decades of successive financial and economic bubbles, inflating the mother of all bubbles with new monster dragon-kings at the horizon. The consequences in terms of a new "normal" are eye-opening. Ref: D. Sornette, Dragon-Kings, Black Swans and the Prediction of Crises, International Journal of Terraspace Science and Engineering 1(3), 1-17 (2009) (http://arXiv.org/abs/0907.4290) and (http://ssrn.com/abstract=1470006)

Interaction of Comets and the Solar Wind

NASA Technical Reports Server (NTRS)

Wagner, William (Technical Monitor); Raymond, John C.

2004-01-01

The analysis of Comet Kudo-Fujikawa at perihelion was published and picked up by Der Spiegel. Besides a large and rapidly increasing water outgassing rate, we detected a bright tail in doubly ionized carbon. The amount of carbon was greater than could be accounted for by CO photodissociation, and we attribute it to evaporation of organics from dust. A spectacular disconnection event was apparent in the C III tail, and it coincides within the uncertainties to the position of the heliospheric current sheet. The analysis of the sungrazing comet C2001 C2 is in press. It showed evidence for subfragments and for a very long lasting source of neutrals, which we identify as evaporation of pyroxene dust grains. Results were also presented at COSPAR. We are working on observations of another sungrazer, comet C2002 S2, which shows a sudden 2 magnitude drop in optical brightness and an equally sudden recovery. UVCS observations during that time show a steadily increasing outgassing rate. We have derived solar wind densities for both comets, but we are still sorting out the ambiguities involving the fragmentation and optical behavior.

Two case studies on NARCCAP precipitation extremes

NASA Astrophysics Data System (ADS)

Weller, Grant B.; Cooley, Daniel; Sain, Stephan R.; Bukovsky, Melissa S.; Mearns, Linda O.

2013-09-01

We introduce novel methodology to examine the ability of six regional climate models (RCMs) in the North American Regional Climate Change Assessment Program (NARCCAP) ensemble to simulate past extreme precipitation events seen in the observational record over two different regions and seasons. Our primary objective is to examine the strength of daily correspondence of extreme precipitation events between observations and the output of both the RCMs and the driving reanalysis product. To explore this correspondence, we employ methods from multivariate extreme value theory. These methods require that we account for marginal behavior, and we first model and compare climatological quantities which describe tail behavior of daily precipitation for both the observations and model output before turning attention to quantifying the correspondence of the extreme events. Daily precipitation in a West Coast region of North America is analyzed in two seasons, and it is found that the simulated extreme events from the reanalysis-driven NARCCAP models exhibit strong daily correspondence to extreme events in the observational record. Precipitation over a central region of the United States is examined, and we find some daily correspondence between winter extremes simulated by reanalysis-driven NARCCAP models and those seen in observations, but no such correspondence is found for summer extremes. Furthermore, we find greater discrepancies among the NARCCAP models in the tail characteristics of the distribution of daily summer precipitation over this region than seen in precipitation over the West Coast region. We find that the models which employ spectral nudging exhibit stronger tail dependence to observations in the central region.

The Legacy of Episodic Climatic Events in Shaping Temperate, Broadleaf Forests

NASA Technical Reports Server (NTRS)

Pederson, Neil; Dyer, James M.; McEwan, Ryan W.; Hessl, Amy E.; Mock, Cary J.; Orwig, David A.; Rieder, Harald E.; Cook, Benjamin I.

2015-01-01

In humid, broadleaf-dominated forests where gap dynamics and partial canopy mortality appears to dominate the disturbance regime at local scales, paleoecological evidence shows alteration at regional-scales associated with climatic change. Yet, little evidence of these broad-scale events exists in extant forests. To evaluate the potential for the occurrence of large-scale disturbance, we used 76 tree-ring collections spanning approx. 840 000 sq km and 5327 tree recruitment dates spanning approx. 1.4 million sq km across the humid eastern United States. Rotated principal component analysis indicated a common growth pattern of a simultaneous reduction in competition in 22 populations across 61 000 km2. Growth-release analysis of these populations reveals an intense and coherent canopy disturbance from 1775 to 1780, peaking in 1776. The resulting time series of canopy disturbance is so poorly described by a Gaussian distribution that it can be described as ''heavy tailed,'' with most of the years from 1775 to 1780 comprising the heavy-tail portion of the distribution. Historical documents provide no evidence that hurricanes or ice storms triggered the 1775-1780 event. Instead, we identify a significant relationship between prior drought and years with elevated rates of disturbance with an intense drought occurring from 1772 to 1775. We further find that years with high rates of canopy disturbance have a propensity to create larger canopy gaps indicating repeated opportunities for rapid change in species composition beyond the landscape scale. Evidence of elevated, regional-scale disturbance reveals how rare events can potentially alter system trajectory: a substantial portion of old-growth forests examined here originated or were substantially altered more than two centuries ago following events lasting just a few years. Our recruitment data, comprised of at least 21 species and several shade-intolerant species, document a pulse of tree recruitment at the subcontinental scale during the late-1600s suggesting that this event was severe enough to open large canopy gaps. These disturbances and their climatic drivers support the hypothesis that punctuated, episodic, climatic events impart a legacy in broadleaf-dominated forests centuries after their occurrence. Given projections of future drought, these results also reveal the potential for abrupt, meso- to large-scale forest change in broadleaf-dominated forests over future decades.

Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage [psi]29 tail

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xiang, Ye; Morais, Marc C.; Cohen, Daniel N.

2009-08-28

The small bacteriophage {phi}29 must penetrate the {approx}250-{angstrom} thick external peptidoglycan cell wall and cell membrane of the Gram-positive Bacillus subtilis, before ejecting its dsDNA genome through its tail into the bacterial cytoplasm. The tail of bacteriophage {phi}29 is noncontractile and {approx}380 {angstrom} long. A 1.8-{angstrom} resolution crystal structure of gene product 13 (gp13) shows that this tail protein has spatially well separated N- and C-terminal domains, whose structures resemble lysozyme-like enzymes and metallo-endopeptidases, respectively. CryoEM reconstructions of the WT bacteriophage and mutant bacteriophages missing some or most of gp13 shows that this enzyme is located at the distal endmore » of the {phi}29 tail knob. This finding suggests that gp13 functions as a tail-associated, peptidoglycan-degrading enzyme able to cleave both the polysaccharide backbone and peptide cross-links of the peptidoglycan cell wall. Comparisons of the gp13{sup -} mutants with the {phi}29 mature and emptied phage structures suggest the sequence of events that occur during the penetration of the tail through the peptidoglycan layer.« less

Whole Genome Sequencing Identifies a Missense Mutation in HES7 Associated with Short Tails in Asian Domestic Cats.

PubMed

Xu, Xiao; Sun, Xin; Hu, Xue-Song; Zhuang, Yan; Liu, Yue-Chen; Meng, Hao; Miao, Lin; Yu, He; Luo, Shu-Jin

2016-08-25

Domestic cats exhibit abundant variations in tail morphology and serve as an excellent model to study the development and evolution of vertebrate tails. Cats with shortened and kinked tails were first recorded in the Malayan archipelago by Charles Darwin in 1868 and remain quite common today in Southeast and East Asia. To elucidate the genetic basis of short tails in Asian cats, we built a pedigree of 13 cats segregating at the trait with a founder from southern China and performed linkage mapping based on whole genome sequencing data from the pedigree. The short-tailed trait was mapped to a 5.6 Mb region of Chr E1, within which the substitution c. 5T > C in the somite segmentation-related gene HES7 was identified as the causal mutation resulting in a missense change (p.V2A). Validation in 245 unrelated cats confirmed the correlation between HES7-c. 5T > C and Chinese short-tailed feral cats as well as the Japanese Bobtail breed, indicating a common genetic basis of the two. In addition, some of our sampled kinked-tailed cats could not be explained by either HES7 or the Manx-related T-box, suggesting at least three independent events in the evolution of domestic cats giving rise to short-tailed traits.

Plasma and magnetic field variations in the distant magnetotail associated with near-earth substorm effects

NASA Technical Reports Server (NTRS)

Baker, D. N.; Bame, S. J.; Mccomas, D. J.; Zwickl, R. D.; Slavin, J. A.; Smith, E. J.

1987-01-01

Examination of many individual event periods in the ISEE 3 deep-tail data set has suggested that magnetospheric substorms produce a characteristic pattern of effects in the distant magnetotail. During the growth, or tail-energy-storage phase of substorms, the magnetotail appears to grow diametrically in size, often by many earth radii. Subsequently, after the substorm expansive phase onset at earth, the distant tail undergoes a sequence of plasma, field, and energetic-particle variations as large-scale plasmoids move rapidly down the tail following their disconnection from the near-earth plasma sheet. ISEE 3 data are appropriate for the study of these effects since the spacecraft remained fixed within the nominal tail location for long periods. Using newly available auroral electrojet indices (AE and AL) and Geo particle data to time substorm onsets at earth, superposed epoch analyses of ISEE 3 and near-earth data prior to, and following, substorm expansive phase onsets have been performed. These analyses quantify and extend substantially the understanding of the deep-tail pattern of response to global substorm-induced dynamical effects.

Extreme events in total ozone over the Northern mid-latitudes: an analysis based on long-term data sets from five European ground-based stations

NASA Astrophysics Data System (ADS)

Rieder, Harald E.; Jancso, Leonhardt M.; Rocco, Stefania Di; Staehelin, Johannes; Maeder, Joerg A.; Peter, Thomas; Ribatet, Mathieu; Davison, Anthony C.; de Backer, Hugo; Koehler, Ulf; Krzyścin, Janusz; Vaníček, Karel

2011-11-01

We apply methods from extreme value theory to identify extreme events in high (termed EHOs) and low (termed ELOs) total ozone and to describe the distribution tails (i.e. very high and very low values) of five long-term European ground-based total ozone time series. The influence of these extreme events on observed mean values, long-term trends and changes is analysed. The results show a decrease in EHOs and an increase in ELOs during the last decades, and establish that the observed downward trend in column ozone during the 1970-1990s is strongly dominated by changes in the frequency of extreme events. Furthermore, it is shown that clear ‘fingerprints’ of atmospheric dynamics (NAO, ENSO) and chemistry [ozone depleting substances (ODSs), polar vortex ozone loss] can be found in the frequency distribution of ozone extremes, even if no attribution is possible from standard metrics (e.g. annual mean values). The analysis complements earlier analysis for the world's longest total ozone record at Arosa, Switzerland, confirming and revealing the strong influence of atmospheric dynamics on observed ozone changes. The results provide clear evidence that in addition to ODS, volcanic eruptions and strong/moderate ENSO and NAO events had significant influence on column ozone in the European sector.

Scar-free wound healing and regeneration following tail loss in the leopard gecko, Eublepharis macularius.

PubMed

Delorme, Stephanie Lynn; Lungu, Ilinca Mihaela; Vickaryous, Matthew Kenneth

2012-10-01

Many lizards are able to undergo scar-free wound healing and regeneration following loss of the tail. In most instances, lizard tail loss is facilitated by autotomy, an evolved mechanism that permits the tail to be self-detached at pre-existing fracture planes. However, it has also been reported that the tail can regenerate following surgical amputation outside the fracture plane. In this study, we used the leopard gecko, Eublepharis macularius, to investigate and compare wound healing and regeneration following autotomy at a fracture plane and amputation outside the fracture plane. Both forms of tail loss undergo a nearly identical sequence of events leading to scar-free wound healing and regeneration. Early wound healing is characterized by transient myofibroblasts and the formation of a highly proliferative wound epithelium immunoreactive for the wound keratin marker WE6. The new tail forms from what is commonly referred to as a blastema, a mass of proliferating mesenchymal-like cells. Blastema cells express the protease matrix metalloproteinase-9. Apoptosis (demonstrated by activated caspase 3 immunostaining) is largely restricted to isolated cells of the original and regenerating tail tissues, although cell death also occurs within dermal structures at the original-regenerated tissue interface and among clusters of newly formed myocytes. Furthermore, the autotomized tail is unique in demonstrating apoptosis among cells adjacent to the fracture planes. Unlike mammals, transforming growth factor-β3 is not involved in wound healing. We demonstrate that scar-free wound healing and regeneration are intrinsic properties of the tail, unrelated to the location or mode of tail detachment. Copyright © 2012 Wiley Periodicals, Inc.

Geochemical investigation of UMTRAP designated site at Durango, Colorado

DOE Office of Scientific and Technical Information (OSTI.GOV)

Markos, G.; Bush, K.J.

1983-09-01

This report is the result of a geochemical investigation of the former uranium mill and tailings site at Durango, Colorado. This is one in a series of site specific geochemical investigations performed on the inactive uranium mill tailings included in the UMTRA Project. The objectives of the investigation are to characterize the geochemistry, to determine the contaminant distribution resulting from the former milling activities and tailings, and to infer chemical pathways and transport mechanisms from the contaminant distribution. The results will be used to model contaminant migration and to develop criteria for long-term containment media such as a cover systemmore » which is impermeable to contaminant migration. This report assumes a familiarity with the hydrologic conditions of the site and the geochemical concepts underlying the investigation. The results reported are based on a one-time sampling of waters and solid material from the background, the area adjacent to the site, and the site. The solid samples are water extracted remove easily soluble salts and acids extracted to remove cabonates and hydroxides. The water extracts and solid samples were analyzed for the major and trace elements. A limited number of samples were analyzed for radiological components. The report includes the methods of sampling, sample processing, analysis, and data interpretation. Three major conclusions are: (1) carbonate salts and low TDS characterize the tailings; (2) the adjacent area and raffinate ponds contain contaminants deposited by a single event of fluid permeation of the soils; and (3) the Animas River adjacent to the site has elevated gross alpha activity attributed to /sup 226/Ra in the sediments derived from the tailings or milling activities.« less

Transforming in-situ observations of CME-driven shock accelerated protons into the shock's reference frame.

NASA Astrophysics Data System (ADS)

Robinson, I. M.; Simnett, G. M.

2005-07-01

We examine the solar energetic particle event following solar activity from 14, 15 April 2001 which includes a "bump-on-the-tail" in the proton energy spectra at 0.99 AU from the Sun. We find this population was generated by a CME-driven shock which arrived at 0.99 AU around midnight 18 April. As such this population represents an excellent opportunity to study in isolation, the effects of proton acceleration by the shock. The peak energy of the bump-on-the-tail evolves to progressively lower energies as the shock approaches the observing spacecraft at the inner Lagrange point. Focusing on the evolution of this peak energy we demonstrate a technique which transforms these in-situ spectral observations into a frame of reference co-moving with the shock whilst making allowance for the effects of pitch angle scattering and focusing. The results of this transform suggest the bump-on-the-tail population was not driven by the 15 April activity but was generated or at least modulated by a CME-driven shock which left the Sun on 14 April. The existence of a bump-on-the-tail population is predicted by models in Rice et al. (2003) and Li et al. (2003) which we compare with observations and the results of our analysis in the context of both the 14 April and 15 April CMEs. We find an origin of the bump-on-the-tail at the 14 April CME-driven shock provides better agreement with these modelled predictions although some discrepancy exists as to the shock's ability to accelerate 100 MeV protons. Keywords. Solar physics, astrophysics and astronomy (Energetic particles; Flares and mass ejections) Space plasma physics (Transport processes)

A Tale of Tails: Dissecting the Enhancing Effect of Tailed Primers in Real-Time PCR

PubMed Central

Vandenbussche, Frank; Mathijs, Elisabeth; Lefebvre, David; De Clercq, Kris; Van Borm, Steven

2016-01-01

Non-specific tail sequences are often added to the 5’-terminus of primers to improve the robustness and overall performance of diagnostic assays. Despite the widespread use of tailed primers, the underlying working mechanism is not well understood. To address this problem, we conducted a detailed in vitro and in silico analysis of the enhancing effect of primer tailing on 2 well-established foot-and-mouth disease virus (FMDV) RT-qPCR assays using an FMDV reference panel. Tailing of the panFMDV-5UTR primers mainly affected the shape of the amplification curves. Modelling of the raw fluorescence data suggested a reduction of the amplification efficiency due to the accumulation of inhibitors. In depth analysis of PCR products indeed revealed the rapid accumulation of forward-primer derived artefacts. More importantly, tailing of the forward primer delayed artefacts formation and concomitantly restored the sigmoidal shape of the amplification curves. Our analysis also showed that primer tailing can alter utilisation patterns of degenerate primers and increase the number of primer variants that are able to participate in the reaction. The impact of tailed primers was less pronounced in the panFMDV-3D assay with only 5 out of 50 isolates showing a clear shift in Cq values. Sequence analysis of the target region of these 5 isolates revealed several mutations in the inter-primer region that extend an existing hairpin structure immediately downstream of the forward primer binding site. Stabilisation of the forward primer with either a tail sequence or cationic spermine units restored the sensitivity of the assay, which suggests that the enhancing effect in the panFMDV-3D assay is due to a more efficient extension of the forward primer. ur results show that primer tailing can alter amplification through various mechanisms that are determined by both the assay and target region. These findings expand our understanding of primer tailing and should enable a more targeted and efficient use of tailed primers. PMID:27723800

Improved Event Location Uncertainty Estimates

DTIC Science & Technology

2006-09-21

validation purposes, we use GT0-2 event clusters. These include the Nevada Lop Nor, Semipalatinsk , and Novaya Zemlys test sites , as well as the Azgir...uncertainties. Furthermore, the tails of real seismic data distributions are heavier than Gaussian. The main objectives of this project are to develop, test

Historic mills and mill tailings as potential sources of contamination in and near the Humboldt River basin, northern Nevada. Chapter D.

USGS Publications Warehouse

Nash, J. Thomas; Stillings, Lisa L.

2003-01-01

Reconnaissance field studies of 40 mining districts in and near the Humboldt River basin have identified 83 mills and associated tailings impoundments and several other kinds of mineral-processing facilities (smelters, mercury retorts, heap-leach pads) related to historic mining. The majority of the mills and tailings sites are not recorded in the literature. All tailings impoundments show evidence of substantial amounts of erosion. At least 11 tailings dams were breached by flood waters, carrying fluvial tailings 1 to 15 km down canyons and across alluvial fans. Most of the tailings sites are dry most of the year, but some are near streams. Tailings that are wet for part of the year do not appear to be reacting significantly with those waters because physical factors such as clay layers and hard-pan cement appear to limit permeability and release of metals to surface waters. The major impact of mill tailings on surface- water quality may be brief flushes of runoff during storm events that carry acid and metals released from soluble mineral crusts. Small ephemeral ponds and puddles that tend to collect in trenches and low areas on tailings impoundments tend to be acidic and extremely enriched in metals, in part through cycles of evaporation. Ponded water that is rich in salts and metals could be acutely toxic to unsuspecting animals. Rare extreme storms have the potential to cause catastrophic failure of tailings impoundments, carry away metals in stormwaters, and transport tailings as debris flows for 1 to 15 km. In most situations these stormwaters and transported tailings could impact wildlife but probably would impact few or no people or domes-tic water wells. Because all identified historic tailings sites are several kilometers or more from the Humboldt River and major tributaries, tailings probably have no measurable impact on water quality in the main stem of the Humboldt River.

Analysis of the effects of wing interference on the tail contributions to the rolling derivatives

NASA Technical Reports Server (NTRS)

Michael, William H , Jr

1952-01-01

An analysis of the effects of wing interference on the tail contributions to the rolling stability derivatives of complete airplane configurations is made by calculating the angularity of the air stream at the vertical tail due to rolling and determining the resulting forces and moments. Some of the important factors which affect the resultant angularity on the vertical tail are wing aspect ratio and sweepback, vertical-tail span, and considerations associated with angle of attack and airplane geometry. Some calculated sidewash results for a limited range of plan forms and vertical-tail sizes are presented. Equations taking into account the sidewash results are given for determining the tail contributions to the rolling derivatives. Comparisons of estimated and experimental results indicate that a consideration of wing interference effects improves the estimated values of the tail contributions to the rolling derivatives and that fair agreement with available experimental data is obtained.

Robust approaches to quantification of margin and uncertainty for sparse data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hund, Lauren; Schroeder, Benjamin B.; Rumsey, Kelin

Characterizing the tails of probability distributions plays a key role in quantification of margins and uncertainties (QMU), where the goal is characterization of low probability, high consequence events based on continuous measures of performance. When data are collected using physical experimentation, probability distributions are typically fit using statistical methods based on the collected data, and these parametric distributional assumptions are often used to extrapolate about the extreme tail behavior of the underlying probability distribution. In this project, we character- ize the risk associated with such tail extrapolation. Specifically, we conducted a scaling study to demonstrate the large magnitude of themore » risk; then, we developed new methods for communicat- ing risk associated with tail extrapolation from unvalidated statistical models; lastly, we proposed a Bayesian data-integration framework to mitigate tail extrapolation risk through integrating ad- ditional information. We conclude that decision-making using QMU is a complex process that cannot be achieved using statistical analyses alone.« less

Non-Gaussian Nature of Fracture and the Survival of Fat-Tail Exponents

NASA Astrophysics Data System (ADS)

Tallakstad, Ken Tore; Toussaint, Renaud; Santucci, Stephane; Måløy, Knut Jørgen

2013-04-01

We study the fluctuations of the global velocity Vl(t), computed at various length scales l, during the intermittent mode-I propagation of a crack front. The statistics converge to a non-Gaussian distribution, with an asymmetric shape and a fat tail. This breakdown of the central limit theorem (CLT) is due to the diverging variance of the underlying local crack front velocity distribution, displaying a power law tail. Indeed, by the application of a generalized CLT, the full shape of our experimental velocity distribution at large scale is shown to follow the stable Levy distribution, which preserves the power law tail exponent under upscaling. This study aims to demonstrate in general for crackling noise systems how one can infer the complete scale dependence of the activity—and extreme event distributions—by measuring only at a global scale.

Time-integrated directional detection of dark matter

NASA Astrophysics Data System (ADS)

O'Hare, Ciaran A. J.; Kavanagh, Bradley J.; Green, Anne M.

2017-10-01

The analysis of signals in directional dark matter (DM) detectors typically assumes that the directions of nuclear recoils can be measured in the Galactic rest frame. However, this is not possible with all directional detection technologies. In nuclear emulsions, for example, the recoil events must be detected and measured after the exposure time of the experiment. Unless the entire detector is mounted and rotated with the sidereal day, the recoils cannot be reoriented in the Galactic rest frame. We examine the effect of this "time integration" on the primary goals of directional detection, namely: (1) confirming that the recoils are anisotropic; (2) measuring the median recoil direction to confirm their Galactic origin; and (3) probing below the neutrino floor. We show that after time integration the DM recoil distribution retains a preferred direction and is distinct from that of Solar neutrino-induced recoils. Many of the advantages of directional detection are therefore preserved and it is not crucial to mount and rotate the detector. Rejecting isotropic backgrounds requires a factor of 2 more signal events compared with an experiment with event time information, whereas a factor of 1.5-3 more events are needed to measure a median direction in agreement with the expectation for DM. We also find that there is still effectively no neutrino floor in a time-integrated directional experiment. However to reach a cross section an order of magnitude below the floor, a factor of ˜8 larger exposure is required than with a conventional directional experiment. We also examine how the sensitivity is affected for detectors with only 2D recoil track readout, and/or no head-tail measurement. As for non-time-integrated experiments, 2D readout is not a major disadvantage, though a lack of head-tail sensitivity is.

Analysis of the tail structures of comet P/Halley 1910 II

NASA Astrophysics Data System (ADS)

Voelzke, M. R.; Izaguirre, L. S.

Eight hundred and eighty six images from September 1909 to May 1911 are analysed for the purpose of identifying, measuring and correlating the morphological structures along the plasma tail of P/Halley. These images are from the Atlas of Comet Halley 1910 II (Donn et al. 1986). A systematic visual analysis revealed 304 wavy structures along the main tail and 164 along the secondary tails, 41 solitary waves (solitons), 13 Swan-like tails, 26 disconnection events (DEs), 166 knots and six shells. While the wavy structures denote undulations or a train of waves, the solitons refer to the formations usually denominated kinks. In general, it is possible to associate the occurrence of a DE and/or a Swan-Tail with the occurrence of a knot, but the last one may occur independently. It is also possible to say that the solitons occur in association with the wavy structures, but the reverse is not true. The 26 DEs documented in 26 different images allowed the derivation of two onsets of DEs, i.e., the time when the comet supposedly crossed a frontier between magnetic sectors of the solar wind. Both onsets of DEs were determined after the perihelion passage with an average of the corrected velocities Vc equal to (57 ± 15) km s-1. The mean value of the corrected wavelength λ c measured in 70 different wavy structures is equal to (1.7 ± 0.1) × 106 km and the mean amplitude A of the wave (measured in the same 70 wavy structures cited above) is equal to (1.4 ± 0.1) × 105 km. The mean value of the corrected cometocentric phase velocity Vpc measured in 20 different wavy structures is equal to (168 ± 28) km s-1. The average value of the corrected velocities Vkc of the knots measured in 36 different images is equal to (128 ± 12) km s-1. There is a tendency for A and λ c to increase with increasing cometocentric distance. The preliminary results of this work agree with the earlier research from Voelzke and Matsuura (1998), which analysed comet P/Halley's tail structures in its last apparition in 1986. Donn, B., Rahe, J. and Brandt, J.C. (1986) Atlas of Comet Halley 1910 II. NASA SP-488, NASA Scientific and Technical Information Branch, 1-600. Voelzke, M.R. and Matsuura, O.T. (1998) Planet. Space Sci. 46 (8), 835-841.

Correlated bursts and the role of memory range

NASA Astrophysics Data System (ADS)

Jo, Hang-Hyun; Perotti, Juan I.; Kaski, Kimmo; Kertész, János

2015-08-01

Inhomogeneous temporal processes in natural and social phenomena have been described by bursts that are rapidly occurring events within short time periods alternating with long periods of low activity. In addition to the analysis of heavy-tailed interevent time distributions, higher-order correlations between interevent times, called correlated bursts, have been studied only recently. As the underlying mechanism behind such correlated bursts is far from being fully understood, we devise a simple model for correlated bursts using a self-exciting point process with a variable range of memory. Whether a new event occurs is stochastically determined by a memory function that is the sum of decaying memories of past events. In order to incorporate the noise and/or limited memory capacity of systems, we apply two memory loss mechanisms: a fixed number or a variable number of memories. By analysis and numerical simulations, we find that too much memory effect may lead to a Poissonian process, implying that there exists an intermediate range of memory effect to generate correlated bursts comparable to empirical findings. Our conclusions provide a deeper understanding of how long-range memory affects correlated bursts.

On the large-scale structure of the tail current as measured by THEMIS

NASA Astrophysics Data System (ADS)

Kalegaev, V. V.; Alexeev, I. I.; Nazarkov, I. S.; Angelopoulos, V.; Runov, A.

2014-11-01

The magnetic field structure and the spatial characteristics of the large-scale currents in the magnetospheric tail were studied during quiet and moderately disturbed geomagnetic conditions in 2009. The magnetic field of the currents other than the tail current was calculated in terms of a paraboloid model of the Earth’s magnetosphere, A2000, and was subtracted from measurements. It was found on the base of obtained tail current magnetic field radial distribution that the inner edge of the tail current sheet is located in the night side magnetosphere, at distances of about 10 RE and of about 7 RE during quiet and disturbed periods respectively. During the disturbance of February 14, 2009 (Dstmin ∼ -35 nT), the Bx and the Bz component of the tail current magnetic field near its inner edge were about 60 nT, and -60 nT that means that strong cross-tail current have been developed. The tail current parameters at different time moments during February 14, 2009 have been estimated. Solar wind conditions during this event were consistent with those during moderate magnetic storms with minimum Dst of about -100 nT. However, the magnetospheric current systems (magnetopause and cross-tail currents) were located at larger geocentric distances than typical during the 2009 extremely quiet epoch and did not provide the expected Dst magnitude. Very small disturbance on the Earth’s surface was detected consistent with an “inflated” magnetosphere.

Materials Examination of the Vertical Stabilizer from American Airlines Flight 587

NASA Technical Reports Server (NTRS)

Fox, Matthew R.; Schultheisz, Carl R.; Reeder, James R.; Jensen, Brian J.

2005-01-01

The first in-flight failure of a primary structural component made from composite material on a commercial airplane led to the crash of American Airlines Flight 587. As part of the National Transportation Safety Board investigation of the accident, the composite materials of the vertical stabilizer were tested, microstructure was analyzed, and fractured composite lugs that attached the vertical stabilizer to the aircraft tail were examined. In this paper the materials testing and analysis is presented, composite fractures are described, and the resulting clues to the failure events are discussed.

Compound Extremes and Bunched Black (or Grouped Grey) Swans.

NASA Astrophysics Data System (ADS)

Watkins, Nicholas

2013-04-01

Observed "wild" natural fluctuations may differ substantially in their character. Some events may be genuinely unforeseen (and unforeseeable), as with Taleb's "black swans". These may occur singly, or may have their impact further magnified by being ``bunched" in time. Some of the others may, however, be the rare extreme events from a light-tailed underlying distribution. Studying their occurrence may then be tractable with the methods of extreme value theory [e.g. Coles, 2001], suitably adapted to allow correlation if that is observed to be present. Yet others may belong to a third broad class, described in today's presentation [ reviewed in Watkins, GRL Frontiers, 2013, doi: 10.1002/grl.50103]. Such "bursty" time series may show comparatively frequent high amplitude events, and/or long range correlations between successive values. The frequent large values due to the first of these effects, modelled in economics by Mandelbrot in 1963 using heavy- tailed probability distributions, can give rise to an "IPCC type I" burst composed of successive wild events. Conversely, long range dependence, even in a light-tailed Gaussian model like Mandelbrot and van Ness' fractional Brownian motion, can integrate ``mild" events into an extreme "IPCC type III" burst. I will show how a standard statistical time series model, linear fractional stable motion (LFSM), which descends from the two special cases advocated by Mandelbrot, allows these two effects to be varied independently, and will present results from a preliminary study of such bursts in LFSM. The consequences for burst scaling when low frequency effects due to dissipation (FARIMA models), and multiplicative cascades (such as multifractals) are included will also be discussed, and the physical assumptions and constraints associated with making a given choice of model.

Compound Extremes and Bunched Black (or Grouped Grey) Swans

NASA Astrophysics Data System (ADS)

Watkins, N. W.

2014-12-01

Observed "wild" natural fluctuations may differ substantially in their character. Some events may be genuinelyunforeseen (and unforeseeable), as with Taleb's "black swans". These may occur singly, or may have their impactfurther magnified by being "bunched" in time. Some of the others may, however, be the rare extreme events from alight-tailed underlying distribution. Studying their occurrence may then be tractable with the methods of extremevalue theory [e.g. Coles, 2001], suitably adapted to allow correlation if that is observed to be present. Yet others may belong to a third broad class, described in today's presentation [ reviewed in Watkins, GRLFrontiers, 2013, doi: 10.1002/grl.50103]. Such "bursty" time series may show comparatively frequent highamplitude events, and/or long range correlations between successive values. The frequent large values due to thefirst of these effects, modelled in economics by Mandelbrot in 1963 using heavy- tailed probability distributions,can give rise to an "IPCC type I" burst composed of successive wild events. Conversely, long range dependence,even in a light-tailed Gaussian model like Mandelbrot and van Ness' fractional Brownian motion, can integrate"mild" events into an extreme "IPCC type III" burst. I will show how a standard statistical time series model, linear fractional stable motion (LFSM), which de-scends from the two special cases advocated by Mandelbrot, allows these two effects to be varied independently,and will present results from a preliminary study of such bursts in LFSM. The consequences for burst scaling whenlow frequency effects due to dissipation (FARIMA models), and multiplicative cascades (such as multifractals)are included will also be discussed, and the physical assumptions and constraints associated with making a givenchoice of model.

Radial expansion of the tail current disruption during substorms - A new approach to the substorm onset region

NASA Technical Reports Server (NTRS)

Ohtani, S.; Kokubun, S.; Russell, C. T.

1992-01-01

A new method is used to examine the radial expansion of the tail current disruption and the substorm onset region. The expansion of the disruption region is specified by examining the time sequence (phase relationship) between the north-south component and the sun-earth component. This method is tested by applying it to the March 6, 1979, event. The phase relationship indicates that the current disruption started on the earthward side of the spacecraft, and expanded tailward past the spacecraft. The method was used for 13 events selected from the ISEE magnetometer data. The results indicate that the current disruption usually starts in the near-earth magnetotail and often within 15 RE from the earth.

Poly A tail length analysis of in vitro transcribed mRNA by LC-MS.

PubMed

Beverly, Michael; Hagen, Caitlin; Slack, Olga

2018-02-01

The 3'-polyadenosine (poly A) tail of in vitro transcribed (IVT) mRNA was studied using liquid chromatography coupled to mass spectrometry (LC-MS). Poly A tails were cleaved from the mRNA using ribonuclease T1 followed by isolation with dT magnetic beads. Extracted tails were then analyzed by LC-MS which provided tail length information at single-nucleotide resolution. A 2100-nt mRNA with plasmid-encoded poly A tail lengths of either 27, 64, 100, or 117 nucleotides was used for these studies as enzymatically added poly A tails showed significant length heterogeneity. The number of As observed in the tails closely matched Sanger sequencing results of the DNA template, and even minor plasmid populations with sequence variations were detected. When the plasmid sequence contained a discreet number of poly As in the tail, analysis revealed a distribution that included tails longer than the encoded tail lengths. These observations were consistent with transcriptional slippage of T7 RNAP taking place within a poly A sequence. The type of RNAP did not alter the observed tail distribution, and comparison of T3, T7, and SP6 showed all three RNAPs produced equivalent tail length distributions. The addition of a sequence at the 3' end of the poly A tail did, however, produce narrower tail length distributions which supports a previously described model of slippage where the 3' end can be locked in place by having a G or C after the poly nucleotide region. Graphical abstract Determination of mRNA poly A tail length using magnetic beads and LC-MS.

Uncovering a role for the tail of the Dictyostelium discoideum SadA protein in cell-substrate adhesion.

PubMed

Kowal, Anthony S; Chisholm, Rex L

2011-05-01

Previous work from our laboratory showed that the Dictyostelium discoideum SadA protein plays a central role in cell-substrate adhesion. SadA null cells exhibit a loss of adhesion, a disrupted actin cytoskeleton, and a cytokinesis defect. How SadA mediates these phenotypes is unknown. This work addresses the mechanism of SadA function, demonstrating an important role for the C-terminal cytoplasmic tail in SadA function. We found that a SadA tailless mutant was unable to rescue the sadA adhesion deficiency, and overexpression of the SadA tail domain reduced adhesion in wild-type cells. We also show that SadA is closely associated with the actin cytoskeleton. Mutagenesis studies suggested that four serine residues in the tail, S924/S925 and S940/S941, may regulate association of SadA with the actin cytoskeleton. Glutathione S-transferase pull-down assays identified at least one likely interaction partner of the SadA tail, cortexillin I, a known actin bundling protein. Thus, our data demonstrate an important role for the carboxy-terminal cytoplasmic tail in SadA function and strongly suggest that a phosphorylation event in this tail regulates an interaction with cortexillin I. Based on our data, we propose a model for the function of SadA.

VARIATION OF SPECTRAL AND TIMING PROPERTIES IN THE EXTENDED BURST TAILS FROM THE MAGNETAR 4U 0142+61

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chakraborty, Manoneeta; Göğüş, Ersin; Muş, Sinem Şaşmaz

2016-03-10

Extended emission episodes with an intensity above the preburst level are observed following magnetar bursts from a number of soft gamma repeaters and anomalous X-ray pulsars (AXPs). Such extended tail emissions were observed following two events detected from AXP 4U 0142+61. We investigated in detail the evolution of spectral and temporal properties during these two tail segments using Rossi X-ray Timing Explorer/Proportional Counter Array observations, and report distinct variations in the spectral and temporal behavior throughout the tails. In particular, in both cases we observed a sudden enhancement of the pulsation amplitude in conjunction with bursts and a smooth declinemore » of X-ray emission (cooling) during the tail. We suggest that an inefficiently radiating trapped fireball formed during the burst, which can heat up the stellar surface, is able to explain the tail properties and its energetics. We also present the episodic detection of absorption and emission features during tails. One possible mechanism that has been proposed to give rise to such spectral lines is the proton/ion cyclotron resonance process, which has been suggested as offering a valuable tool in probing the complex magnetic field of magnetars.« less

Accidental Water Pollution Risk Analysis of Mine Tailings Ponds in Guanting Reservoir Watershed, Zhangjiakou City, China.

PubMed

Liu, Renzhi; Liu, Jing; Zhang, Zhijiao; Borthwick, Alistair; Zhang, Ke

2015-12-02

Over the past half century, a surprising number of major pollution incidents occurred due to tailings dam failures. Most previous studies of such incidents comprised forensic analyses of environmental impacts after a tailings dam failure, with few considering the combined pollution risk before incidents occur at a watershed-scale. We therefore propose Watershed-scale Tailings-pond Pollution Risk Analysis (WTPRA), designed for multiple mine tailings ponds, stemming from previous watershed-scale accidental pollution risk assessments. Transferred and combined risk is embedded using risk rankings of multiple routes of the "source-pathway-target" in the WTPRA. The previous approach is modified using multi-criteria analysis, dam failure models, and instantaneous water quality models, which are modified for application to multiple tailings ponds. The study area covers the basin of Gutanting Reservoir (the largest backup drinking water source for Beijing) in Zhangjiakou City, where many mine tailings ponds are located. The resultant map shows that risk is higher downstream of Gutanting Reservoir and in its two tributary basins (i.e., Qingshui River and Longyang River). Conversely, risk is lower in the midstream and upstream reaches. The analysis also indicates that the most hazardous mine tailings ponds are located in Chongli and Xuanhua, and that Guanting Reservoir is the most vulnerable receptor. Sensitivity and uncertainty analyses are performed to validate the robustness of the WTPRA method.

Accidental Water Pollution Risk Analysis of Mine Tailings Ponds in Guanting Reservoir Watershed, Zhangjiakou City, China

PubMed Central

Liu, Renzhi; Liu, Jing; Zhang, Zhijiao; Borthwick, Alistair; Zhang, Ke

2015-01-01

Over the past half century, a surprising number of major pollution incidents occurred due to tailings dam failures. Most previous studies of such incidents comprised forensic analyses of environmental impacts after a tailings dam failure, with few considering the combined pollution risk before incidents occur at a watershed-scale. We therefore propose Watershed-scale Tailings-pond Pollution Risk Analysis (WTPRA), designed for multiple mine tailings ponds, stemming from previous watershed-scale accidental pollution risk assessments. Transferred and combined risk is embedded using risk rankings of multiple routes of the “source-pathway-target” in the WTPRA. The previous approach is modified using multi-criteria analysis, dam failure models, and instantaneous water quality models, which are modified for application to multiple tailings ponds. The study area covers the basin of Gutanting Reservoir (the largest backup drinking water source for Beijing) in Zhangjiakou City, where many mine tailings ponds are located. The resultant map shows that risk is higher downstream of Gutanting Reservoir and in its two tributary basins (i.e., Qingshui River and Longyang River). Conversely, risk is lower in the midstream and upstream reaches. The analysis also indicates that the most hazardous mine tailings ponds are located in Chongli and Xuanhua, and that Guanting Reservoir is the most vulnerable receptor. Sensitivity and uncertainty analyses are performed to validate the robustness of the WTPRA method. PMID:26633450

Polyadenylation state microarray (PASTA) analysis.

PubMed

Beilharz, Traude H; Preiss, Thomas

2011-01-01

Nearly all eukaryotic mRNAs terminate in a poly(A) tail that serves important roles in mRNA utilization. In the cytoplasm, the poly(A) tail promotes both mRNA stability and translation, and these functions are frequently regulated through changes in tail length. To identify the scope of poly(A) tail length control in a transcriptome, we developed the polyadenylation state microarray (PASTA) method. It involves the purification of mRNA based on poly(A) tail length using thermal elution from poly(U) sepharose, followed by microarray analysis of the resulting fractions. In this chapter we detail our PASTA approach and describe some methods for bulk and mRNA-specific poly(A) tail length measurements of use to monitor the procedure and independently verify the microarray data.

Development of a Model for the Night Side Magnetopause using Global Simulations

NASA Technical Reports Server (NTRS)

Raeder, Joachim

1998-01-01

During the final year of this investigation we have finished several event studies that we considered necessary for the development of a tail magnetopause model and for the calibration of our simulation code. We have not reached the ultimate goal of the project, i.e., the development of an analytical tail magnetopause model. In the course of the investigation we have learned that such a model would be much more complex than we had anticipated. However, the investigations that we conducted towards this goal have led to significant results and discoveries that are of considerable value for understanding the tail magnetopause. These are summarized in the following sections.

Turbulence-driven anisotropic electron tail generation during magnetic reconnection

NASA Astrophysics Data System (ADS)

DuBois, A. M.; Scherer, A.; Almagri, A. F.; Anderson, J. K.; Pandya, M. D.; Sarff, J. S.

2018-05-01

Magnetic reconnection (MR) plays an important role in particle transport, energization, and acceleration in space, astrophysical, and laboratory plasmas. In the Madison Symmetric Torus reversed field pinch, discrete MR events release large amounts of energy from the equilibrium magnetic field, a fraction of which is transferred to electrons and ions. Previous experiments revealed an anisotropic electron tail that favors the perpendicular direction and is symmetric in the parallel. New profile measurements of x-ray emission show that the tail distribution is localized near the magnetic axis, consistent modeling of the bremsstrahlung emission. The tail appears first near the magnetic axis and then spreads radially, and the dynamics in the anisotropy and diffusion are discussed. The data presented imply that the electron tail formation likely results from a turbulent wave-particle interaction and provides evidence that high energy electrons are escaping the core-localized region through pitch angle scattering into the parallel direction, followed by stochastic parallel transport to the plasma edge. New measurements also show a strong correlation between high energy x-ray measurements and tearing mode dynamics, suggesting that the coupling between core and edge tearing modes is essential for energetic electron tail formation.

On the statistical properties and tail risk of violent conflicts

NASA Astrophysics Data System (ADS)

Cirillo, Pasquale; Taleb, Nassim Nicholas

2016-06-01

We examine statistical pictures of violent conflicts over the last 2000 years, providing techniques for dealing with the unreliability of historical data. We make use of a novel approach to deal with fat-tailed random variables with a remote but nonetheless finite upper bound, by defining a corresponding unbounded dual distribution (given that potential war casualties are bounded by the world population). This approach can also be applied to other fields of science where power laws play a role in modeling, like geology, hydrology, statistical physics and finance. We apply methods from extreme value theory on the dual distribution and derive its tail properties. The dual method allows us to calculate the real tail mean of war casualties, which proves to be considerably larger than the corresponding sample mean for large thresholds, meaning severe underestimation of the tail risks of conflicts from naive observation. We analyze the robustness of our results to errors in historical reports. We study inter-arrival times between tail events and find that no particular trend can be asserted. All the statistical pictures obtained are at variance with the prevailing claims about ;long peace;, namely that violence has been declining over time.

Extreme values and fat tails of multifractal fluctuations

NASA Astrophysics Data System (ADS)

Muzy, J. F.; Bacry, E.; Kozhemyak, A.

2006-06-01

In this paper we discuss the problem of the estimation of extreme event occurrence probability for data drawn from some multifractal process. We also study the heavy (power-law) tail behavior of probability density function associated with such data. We show that because of strong correlations, the standard extreme value approach is not valid and classical tail exponent estimators should be interpreted cautiously. Extreme statistics associated with multifractal random processes turn out to be characterized by non-self-averaging properties. Our considerations rely upon some analogy between random multiplicative cascades and the physics of disordered systems and also on recent mathematical results about the so-called multifractal formalism. Applied to financial time series, our findings allow us to propose an unified framework that accounts for the observed multiscaling properties of return fluctuations, the volatility clustering phenomenon and the observed “inverse cubic law” of the return pdf tails.

Spatial and Temporal Analysis of the Microbial Community in the Tailings of a Pb-Zn Mine Generating Acidic Drainage ▿ †

PubMed Central

Huang, Li-Nan; Zhou, Wen-Hua; Hallberg, Kevin B.; Wan, Cai-Yun; Li, Jie; Shu, Wen-Sheng

2011-01-01

Analysis of spatial and temporal variations in the microbial community in the abandoned tailings impoundment of a Pb-Zn mine revealed distinct microbial populations associated with the different oxidation stages of the tailings. Although Acidithiobacillus ferrooxidans and Leptospirillum spp. were consistently present in the acidic tailings, acidophilic archaea, mostly Ferroplasma acidiphilum, were predominant in the oxidized zones and the oxidation front, indicating their importance to generation of acid mine drainage. PMID:21705549

Calibrating a Method for Reconstructing ENSO Variance in the Eastern Tropical Pacific Using Mg/Ca in Individual Planktic Foraminifera

NASA Astrophysics Data System (ADS)

Rongstad, B.; Marchitto, T. M., Jr.; Koutavas, A.; Mekik, F.

2017-12-01

El Niño Southern Oscillation (ENSO) is Earth's dominant mode of interannual climate variability, and is responsible for widespread climatic, ecological and societal impacts, such as reduced upwelling and fishery collapse in the eastern equatorial Pacific during El Niño events. While corals offer high resolution records of paleo-ENSO, continuous and gap-free records for the tropical Pacific are rare. Individual foraminifera analyses provide an opportunity to create continuous down-core records of ENSO through the construction and comparison of species-specific sea surface temperature (SST) distributions at different time periods; however, there has been little focus on calibrating this technique to modern ENSO conditions. Here, we present data from a core-top calibration of individual Mg/Ca measurements in planktic foraminifera in the eastern tropical Pacific, using surface dweller G. ruber and thermocline dweller N. dutertrei. We convert the individual Mg/Ca measurements to inferred temperature distributions for each species, and then compare the distributions to modern day temperature characteristics including vertical structure, annual mean, seasonality, and interannual variability. ENSO variance is theoretically inferred from the tails of the distributions: El Niño events affect the warm tail and La Niña events affect the cool tail. Finally, we discuss the utility of individual measurements of Mg/Ca in planktic foraminifera to reconstruct ENSO in down-core sections.

Study on the Influence of Elevation of Tailing Dam on Stability

NASA Astrophysics Data System (ADS)

Wan, Shuai; Wang, Kun; Kong, Songtao; Zhao, Runan; Lan, Ying; Zhang, Run

2017-12-01

This paper takes Yunnan as the object of a tailing, by theoretical analysis and numerical calculation method of the effect of seismic load effect of elevation on the stability of the tailing, to analyse the stability of two point driven safety factor and liquefaction area. The Bishop method is adopted to simplify the calculation of dynamic safety factor and liquefaction area analysis using comparison method of shear stress to analyse liquefaction, so we obtained the influence of elevation on the stability of the tailing. Under the earthquake, with the elevation increased, the safety coefficient of dam body decreases, shallow tailing are susceptible to liquefy. Liquefaction area mainly concentrated in the bank below the water surface, to improve the scientific basis for the design and safety management of the tailing.

Quantification of applied dose in irradiated citrus fruits by DNA Comet Assay together with image analysis.

PubMed

Cetinkaya, Nurcan; Ercin, Demet; Özvatan, Sümer; Erel, Yakup

2016-02-01

The experiments were conducted for quantification of applied dose for quarantine control in irradiated citrus fruits. Citrus fruits exposed to doses of 0.1 to 1.5 kGy and analyzed by DNA Comet Assay. Observed comets were evaluated by image analysis. The tail length, tail moment and tail DNA% of comets were used for the interpretation of comets. Irradiated citrus fruits showed the separated tails from the head of the comet by increasing applied doses from 0.1 to 1.5 kGy. The mean tail length and mean tail moment% levels of irradiated citrus fruits at all doses are significantly different (p < 0.01) from control even for the lowest dose at 0.1 kGy. Thus, DNA Comet Assay may be a practical quarantine control method for irradiated citrus fruits since it has been possible to estimate the applied low doses as small as 0.1 kGy when it is combined with image analysis. Copyright © 2015 Elsevier Ltd. All rights reserved.

A Statistics-based Platform for Quantitative N-terminome Analysis and Identification of Protease Cleavage Products*

PubMed Central

auf dem Keller, Ulrich; Prudova, Anna; Gioia, Magda; Butler, Georgina S.; Overall, Christopher M.

2010-01-01

Terminal amine isotopic labeling of substrates (TAILS), our recently introduced platform for quantitative N-terminome analysis, enables wide dynamic range identification of original mature protein N-termini and protease cleavage products. Modifying TAILS by use of isobaric tag for relative and absolute quantification (iTRAQ)-like labels for quantification together with a robust statistical classifier derived from experimental protease cleavage data, we report reliable and statistically valid identification of proteolytic events in complex biological systems in MS2 mode. The statistical classifier is supported by a novel parameter evaluating ion intensity-dependent quantification confidences of single peptide quantifications, the quantification confidence factor (QCF). Furthermore, the isoform assignment score (IAS) is introduced, a new scoring system for the evaluation of single peptide-to-protein assignments based on high confidence protein identifications in the same sample prior to negative selection enrichment of N-terminal peptides. By these approaches, we identified and validated, in addition to known substrates, low abundance novel bioactive MMP-2 targets including the plasminogen receptor S100A10 (p11) and the proinflammatory cytokine proEMAP/p43 that were previously undescribed. PMID:20305283

Response of key soil parameters during compost-assisted phytostabilization in extremely acidic tailings: effect of plant species.

PubMed

Solís-Dominguez, Fernando A; White, Scott A; Hutter, Travis Borrillo; Amistadi, Mary Kay; Root, Robert A; Chorover, Jon; Maier, Raina M

2012-01-17

Phytostabilization of mine tailings acts to mitigate both eolian dispersion and water erosion events which can disseminate barren tailings over large distances. This technology uses plants to establish a vegetative cover to permanently immobilize contaminants in the rooting zone, often requiring addition of an amendment to assist plant growth. Here we report the results of a greenhouse study that evaluated the ability of six native plant species to grow in extremely acidic (pH ∼ 2.5) metalliferous (As, Pb, Zn: 2000-3000 mg kg(-1)) mine tailings from Iron King Mine Humboldt Smelter Superfund site when amended with a range of compost concentrations. Results revealed that three of the six plant species tested (buffalo grass, mesquite, and catclaw acacia) are good candidates for phytostabilization at an optimum level of 15% compost (w/w) amendment showing good growth and minimal shoot accumulation of metal(loid)s. A fourth candidate, quailbush, also met all criteria except for exceeding the domestic animal toxicity limit for shoot accumulation of zinc. A key finding of this study was that the plant species that grew most successfully on these tailings significantly influenced key tailings parameters; direct correlations between plant biomass and both increased tailings pH and neutrophilic heterotrophic bacterial counts were observed. We also observed decreased iron oxidizer counts and decreased bioavailability of metal(loid)s mainly as a result of compost amendment. Taken together, these results suggest that the phytostabilization process reduced tailings toxicity as well as the potential for metal(loid) mobilization. This study provides practical information on plant and tailings characteristics that is critically needed for successful implementation of assisted phytostabilization on acidic, metalliferous mine tailings sites.

Response of Key Soil Parameters During Compost-Assisted Phytostabilization in Extremely Acidic Tailings: Effect of Plant Species

PubMed Central

Solís-Dominguez, Fernando A.; White, Scott A.; Hutter, Travis Borrillo; Amistadi, Mary Kay; Root, Robert A.; Chorover, Jon; Maier, Raina M.

2012-01-01

Phytostabilization of mine tailings acts to mitigate both eolian dispersion and water erosion events which can disseminate barren tailings over large distances. This technology uses plants to establish a vegetative cover to permanently immobilize contaminants in the rooting zone, often requiring addition of an amendment to assist plant growth. Here we report the results of a greenhouse study that evaluated the ability of six native plant species to grow in extremely acidic (pH ~ 2.5) metalliferous (As, Pb, Zn: 2000–3000 mg kg−1) mine tailings from Iron King Mine Humboldt Smelter Superfund site when amended with a range of compost concentrations. Results revealed that three of the six plant species tested (buffalo grass, mesquite, and catclaw acacia) are good candidates for phytostabilization at an optimum level of 15% compost (w/w) amendment showing good growth and minimal shoot accumulation of metal(loid)s. A fourth candidate, quailbush, also met all criteria except for exceeding the domestic animal toxicity limit for shoot accumulation of zinc. A key finding of this study was that the plant species that grew most successfully on these tailings significantly influenced key tailings parameters; direct correlations between plant biomass and both increased tailings pH and neutrophilic heterotrophic bacterial counts were observed. We also observed decreased iron oxidizer counts and decreased bioavailability of metal(loid)s mainly as a result of compost amendment. Taken together, these results suggest that the phytostabilization process reduced tailings toxicity as well as the potential for metal(loid) mobilization. This study provides practical information on plant and tailings characteristics that is critically needed for successful implementation of assisted phytostabilization on acidic, metalliferous mine tailings sites. PMID:22191663

Mineralogical and geochemical characterization of arsenic in an abandoned mine tailings of Korea.

PubMed

Ahn, Joo Sung; Park, Young Seog; Kim, Ju-Yong; Kim, Kyoung-Woong

2005-04-01

The mineralogical and chemical characteristics of As solid phases in arsenic-rich mine tailings from the Nakdong As-Bi mine in Korea was investigated. The tailings generated from the ore roasting process contained 4.36% of As whereas the concentration was up to 20.2% in some tailings from the cyanidation process for the Au extraction. Thin indurated layers and other secondary precipitates had formed at the surfaces of the tailings piles and the As contents of the hardened layers varied from 2.87 to 16.0%. Scorodite and iron arsenate (Fe3AsO7) were the primary As-bearing crystalline minerals. Others such as arsenolamprite, bernardite and titanium oxide arsenate were also found. The amorphous As-Fe phases often showed framboidal aggregates and gel type textures with desiccation cracks. Sequential extraction results also showed that 55.7-91.1% of the As in tailings were NH(4)-oxalate extractable As, further confirmed the predominance of amorphous As-Fe solid phases. When the tailings were equilibrated with de-ionized water, the solution exhibited extremely acidic conditions (pH 2.01-3.10) and high concentrations of dissolved As (up to 29.5 mg L(-1)), indicating high potentials for As to be released during rainfall events. The downstream water was affected by drainage from tailings and contained 12.7-522 microg L(-1) of As. The amorphous As-Fe phases in tailings have not entirely been stabilized through the long term natural weathering processes. To remediate the environmental harms they had caused, anthropogenic interventions to stabilize or immobilize As in the tailings pile should be explored.

Characteristic Paths of Extratropical Cyclones that Cause High Wind Events in the Northeast United States

NASA Astrophysics Data System (ADS)

Booth, J. F.; Rieder, H. E.; Lee, D.; Kushnir, Y.

2014-12-01

This study analyzes the association between wintertime high wind events (HWEs) in the northeast United States US and extratropical cyclones. Sustained wind maxima in the Daily Summary Data from the National Climatic Data Center's Integrated Surface Database are analyzed for 1979-2012. For each station, a Generalized Pareto Distribution (GPD) is fit to the upper tail of the daily maximum wind speed data, and probabilistic return levels at intervals of 1, 3 and 5-years are derived from the GPD fit. At each interval, wind events meeting the return level criteria are termed HWEs. The HWEs occurring on the same day are grouped into multi-station events allowing the association with extratropical cyclones, which are tracked in the European Center for Medium-Range Weather Forecast ERA-Interim reanalysis. Using hierarchical clustering analysis, this study finds that the HWEs are most often associated with cyclones travelling from southwest to northeast, usually originating west of the Appalachian Mountains. The results show that a storm approaching from the southwest is four times more likely to cause strong surface winds than a Nor'easter. A series of sensitivity analyses confirms the robustness of this result. Next, the relationship between the strength of the wind events and the corresponding storm minimum sea level pressure is analyzed. No robust relationship between these quantities is found for strong wind events. Nevertheless, subsequent analysis shows that a relationship between deeper storms and stronger winds emerges if the analysis is extended to the entire set of wintertime storms.

Nonreproductive role of gonadotropin-releasing hormone in the control of ascidian metamorphosis.

PubMed

Kamiya, Chisato; Ohta, Naoyuki; Ogura, Yosuke; Yoshida, Keita; Horie, Takeo; Kusakabe, Takehiro G; Satake, Honoo; Sasakura, Yasunori

2014-12-01

Gonadotropin-releasing hormones (GnRHs) are neuropeptides that play central roles in the reproduction of vertebrates. In the ascidian Ciona intestinalis, GnRHs and their receptors are expressed in the nervous systems at the larval stage, when animals are not yet capable of reproduction, suggesting that the hormones have non-reproductive roles. We showed that GnRHs in Ciona are involved in the animal's metamorphosis by regulating tail absorption and adult organ growth. Absorption of the larval tail and growth of the adult organs are two major events in the metamorphosis of ascidians. When larvae were treated with GnRHs, they completed tail absorption more frequently than control larvae. cAMP was suggested to be a second messenger for the induction of tail absorption by GnRHs. tGnRH-3 and tGnRH-5 (the "t" indicates "tunicate") inhibited the growth of adult organs by arresting cell cycle progression in parallel with the promotion of tail absorption. This study provides new insights into the molecular mechanisms of ascidian metamorphosis conducted by non-reproductive GnRHs. © 2014 Wiley Periodicals, Inc.

Hard Sphere Simulation by Event-Driven Molecular Dynamics: Breakthrough, Numerical Difficulty, and Overcoming the issues

NASA Astrophysics Data System (ADS)

Isobe, Masaharu

Hard sphere/disk systems are among the simplest models and have been used to address numerous fundamental problems in the field of statistical physics. The pioneering numerical works on the solid-fluid phase transition based on Monte Carlo (MC) and molecular dynamics (MD) methods published in 1957 represent historical milestones, which have had a significant influence on the development of computer algorithms and novel tools to obtain physical insights. This chapter addresses the works of Alder's breakthrough regarding hard sphere/disk simulation: (i) event-driven molecular dynamics, (ii) long-time tail, (iii) molasses tail, and (iv) two-dimensional melting/crystallization. From a numerical viewpoint, there are serious issues that must be overcome for further breakthrough. Here, we present a brief review of recent progress in this area.

A statistical study of magnetic field magnitude changes during substorms in the near earth tail

NASA Technical Reports Server (NTRS)

Lopez, R. E.; Lui, A. T. Y.; Mcentire, R. W.; Potemra, T. A.; Krimigis, S. M.

1990-01-01

Using AMPTE/CCE data taken in 1985 and 1986 when the CCE apogee (8.8 earth radii) was within 4.5 hours of midnight, 167 injection events in the near-earth magnetotail have been cataloged. These events are exactly or nearly dispersionless on a 72-sec time scale from 25 keV to 285 keV. The changes in the field magnitude are found to be consistent with the expected effects of the diversion/disruption of the cross-tail current during a substorm, and the latitudinal position of the current sheet is highly variable within the orbit of CCE. The local time variation of the magnetic-field changes implies that the substorm current wedge is composed of longitudinally broad Birkeland currents.

A simulation study of particle energization observed by THEMIS spacecraft during a substorm

NASA Astrophysics Data System (ADS)

Ashour-Abdalla, Maha; Bosqued, Jean-Michel; El-Alaoui, Mostafa; Peroomian, Vahe; Zhou, Meng; Richard, Robert; Walker, Raymond; Runov, Andrei; Angelopoulos, Vassilis

2009-09-01

Energetic ions with hundreds of keV energy are frequently observed in the near-Earth tail during magnetospheric substorms. We examined the sources and acceleration of ions during a magnetospheric substorm on 1 March 2008 by using Time History of Events and Macroscale Interactions during Substorms (THEMIS) and Cluster observations and numerical simulations. Four of the THEMIS spacecraft were aligned at yGSM = 6 RE during a very large substorm (AE = 1200) while the Cluster spacecraft were located about 5 RE above the auroral ionosphere. For 2 h before the substorm, Cluster observed ionospheric oxygen flowing out into the magnetosphere. After substorm onset the THEMIS P3 and P4 spacecraft located in the near-Earth tail (xGSM = -9 RE and -8 RE, respectively) observed large fluxes of energetic ions up to 500 keV. We used calculations of millions of ions of solar wind and ionospheric origin in the time-dependent electric and magnetic fields from a global magnetohydrodynamic simulation of this event to study the source of these ions and their acceleration. The simulation did a good job of reproducing the particle observations. Both solar wind protons and ionospheric oxygen were accelerated by nonadiabatic motion across large (>˜5 mV/m) total electric fields (both potential and induced). The acceleration occurred in the "wall" region of the near-Earth tail where nonadiabatic motion dominates over convection and the particles move rapidly across the tail. The acceleration occurred mostly in regions with large electric fields and nonadiabatic motion. There was relatively little acceleration in regions with large electric fields and adiabatic motion or small electric fields and nonadiabatic motion. Prior to substorm onset, ionospheric ions were a significant contributor to the cross-tail current, but after onset, solar wind ions become more dominant.

The earliest drawings of datable auroras and a two-tail comet from the Syriac Chronicle of Zūqnīn

NASA Astrophysics Data System (ADS)

Hayakawa, Hisashi; Mitsuma, Yasuyuki; Fujiwara, Yasunori; Kawamura, Akito Davis; Kataoka, Ryuho; Ebihara, Yusuke; Kosaka, Shunsuke; Iwahashi, Kiyomi; Tamazawa, Harufumi; Isobe, Hiroaki

2017-04-01

People have probably been watching the sky since the beginning of human history. Observers in pre-telescopic ages recorded anomalous events, which now provide uniquely valuable information for modern scientists. Records that include drawings are particularly useful, since the verbal expressions recorded by pre-telescopic observers, who did not know the physical nature of the phenomena, are often ambiguous. However, drawings concerning specific datable events in the historical documents are far fewer than the verbal records. Therefore, in this paper we show the possible earliest drawings of datable auroras and a two-tail comet included in a manuscript of the Chronicle of Zūqnīn, a Syriac chronicle up to 775/776 CE, to interpret their nature. Careful perusing the original Syriac autograph manuscript, MS Vat.Sir.162, provide not only historical facts in the realm around Amida, but also information concerning low-latitude aurora observations due to extreme space weather events and the existence of sun-grazing comets.

Uncovering a Role for the Tail of the Dictyostelium discoideum SadA Protein in Cell-Substrate Adhesion ▿ †

PubMed Central

Kowal, Anthony S.; Chisholm, Rex L.

2011-01-01

Previous work from our laboratory showed that the Dictyostelium discoideum SadA protein plays a central role in cell-substrate adhesion. SadA null cells exhibit a loss of adhesion, a disrupted actin cytoskeleton, and a cytokinesis defect. How SadA mediates these phenotypes is unknown. This work addresses the mechanism of SadA function, demonstrating an important role for the C-terminal cytoplasmic tail in SadA function. We found that a SadA tailless mutant was unable to rescue the sadA adhesion deficiency, and overexpression of the SadA tail domain reduced adhesion in wild-type cells. We also show that SadA is closely associated with the actin cytoskeleton. Mutagenesis studies suggested that four serine residues in the tail, S924/S925 and S940/S941, may regulate association of SadA with the actin cytoskeleton. Glutathione S-transferase pull-down assays identified at least one likely interaction partner of the SadA tail, cortexillin I, a known actin bundling protein. Thus, our data demonstrate an important role for the carboxy-terminal cytoplasmic tail in SadA function and strongly suggest that a phosphorylation event in this tail regulates an interaction with cortexillin I. Based on our data, we propose a model for the function of SadA. PMID:21441344

Green function of the double-fractional Fokker-Planck equation: path integral and stochastic differential equations.

PubMed

Kleinert, H; Zatloukal, V

2013-11-01

The statistics of rare events, the so-called black-swan events, is governed by non-Gaussian distributions with heavy power-like tails. We calculate the Green functions of the associated Fokker-Planck equations and solve the related stochastic differential equations. We also discuss the subject in the framework of path integration.

The Splitting of Double-component Active Asteroid P/2016 J1 (PANSTARRS)

NASA Astrophysics Data System (ADS)

Moreno, F.; Pozuelos, F. J.; Novaković, B.; Licandro, J.; Cabrera-Lavers, A.; Bolin, Bryce; Jedicke, Robert; Gladman, Brett J.; Bannister, Michele T.; Gwyn, Stephen D. J.; Vereš, Peter; Chambers, Kenneth; Chastel, Serge; Denneau, Larry; Flewelling, Heather; Huber, Mark; Schunová-Lilly, Eva; Magnier, Eugene; Wainscoat, Richard; Waters, Christopher; Weryk, Robert; Farnocchia, Davide; Micheli, Marco

2017-03-01

We present deep imaging observations, orbital dynamics, and dust-tail model analyses of the double-component asteroid P/2016 J1 (J1-A and J1-B). The observations were acquired at the Gran Telescopio Canarias (GTC) and the Canada-France-Hawaii Telescope (CFHT) from mid-March to late July of 2016. A statistical analysis of backward-in-time integrations of the orbits of a large sample of clone objects of P/2016 J1-A and J1-B shows that the minimum separation between them occurred most likely ˜2300 days prior to the current perihelion passage, I.e., during the previous orbit near perihelion. This closest approach was probably linked to a fragmentation event of their parent body. Monte Carlo dust-tail models show that those two components became active simultaneously ˜250 days before the current perihelion, with comparable maximum loss rates of ˜0.7 and ˜0.5 kg s-1, and total ejected masses of 8 × 106 and 6 × 106 kg for fragments J1-A and J1-B, respectively. Consequently, the fragmentation event and the present dust activity are unrelated. The simultaneous activation times of the two components and the fact that the activity lasted 6-9 months or longer, strongly indicate ice sublimation as the most likely mechanism involved in the dust emission process.

A case study of magnetotail current sheet disruption and diversion

NASA Technical Reports Server (NTRS)

Lui, A. T. Y.; Lopez, R. E.; Krimigis, S. M.; Mcentire, R. W.; Zanetti, L. J.

1988-01-01

On June 1, 1985 the AMPTE/CCE spacecraft (at a geocentric distance of about 8.8 earth radii at the midnight neutral sheet region) observed a dispersionless energetic particle injection and an increase in magnetic field magnitude, which are features commonly attributed to disruption of the near-earth cross-tail current sheet during substorm expansion onsets. An analysis based on high time-resolution measurements from the magnetometer and the energetic particle detector indicates that the current sheet disruption region exhibited localized (less than 1 earth radius) and transient (less than 1 min) particle intensity enhancements, accompanied by complex magnetic field changes with occasional development of a southward magnetic field component. Similar features are seen in other current disruption/diversion events observed by the CCE. The present analysis suggests that the current disruption region is quite turbulent, similar to laboratory experiments on current sheet disruption, with signatures unlike those expected from an X-type neutral line configuration. No clear indication of periodicity in any magnetic field parameter is discernible for this current disruption event.

Syntenic block overlap multiplicities with a panel of reference genomes provide a signature of ancient polyploidization events.

PubMed

Zheng, Chunfang; Santos Muñoz, Daniella; Albert, Victor A; Sankoff, David

2015-01-01

Following whole genome duplication (WGD), there is a compact distribution of gene similarities within the genome reflecting duplicate pairs of all the genes in the genome. With time, the distribution broadens and loses volume due to variable decay of duplicate gene similarity and to the process of duplicate gene loss. If there are two WGD, the older one becomes so reduced and broad that it merges with the tail of the distributions resulting from more recent events, and it becomes difficult to distinguish them. The goal of this paper is to advance statistical methods of identifying, or at least counting, the WGD events in the lineage of a given genome. For a set of 15 angiosperm genomes, we analyze all 15 × 14 = 210 ordered pairs of target genome versus reference genome, using SynMap to find syntenic blocks. We consider all sets of B ≥ 2 syntenic blocks in the target genome that overlap in the reference genome as evidence of WGD activity in the target, whether it be one event or several. We hypothesize that in fitting an exponential function to the tail of the empirical distribution f (B) of block multiplicities, the size of the exponent will reflect the amount of WGD in the history of the target genome. By amalgamating the results from all reference genomes, a range of values of SynMap parameters, and alternative cutoff points for the tail, we find a clear pattern whereby multiple-WGD core eudicots have the smallest (negative) exponents, followed by core eudicots with only the single "γ" triplication in their history, followed by a non-core eudicot with a single WGD, followed by the monocots, with a basal angiosperm, the WGD-free Amborella having the largest exponent. The hypothesis that the exponent of the fit to the tail of the multiplicity distribution is a signature of the amount of WGD is verified, but there is also a clear complicating factor in the monocot clade, where a history of multiple WGD is not reflected in a small exponent.

A Compton Suppressed Gamma Ray Counter For Radio Assay of Materials

NASA Astrophysics Data System (ADS)

Godfrey, Benjamin

2016-03-01

Rare event searches, such as direct dark matter experiments, require materials with ultra-low levels of natural radioactivity. We present a neutron activation analysis (NAA) technique for assaying metals, specifically titanium used for cryostat construction. Earlier attempts at NAA encountered limitations due to bulk activation via (n, p) reactions, which contributed to large continuum backgrounds due to Compton tails. Our method involves a heavy water shielded exposure to minimize (n,p) reactions and a sodium iodide shielded high purity germanium counter for the gamma ray assay. Preliminary results on assays for U/Th/K contamination in titaniumwill be presented.

The impact of tail tip amputation and ink tattoo on C57BL/6JBomTac mice.

PubMed

Sørensen, Dorte Bratbo; Stub, Charlotte; Jensen, Henrik Elvang; Ritskes-Hoitinga, Merel; Hjorth, Peter; Ottesen, Jan Lund; Hansen, Axel Kornerup

2007-01-01

Genetic material for polymerase chain reaction (PCR) and Southern blot analysis on transgenic mice is normally obtained by tail biopsy. Additionally, it may be necessary to tattoo the mice, as it is essential to have a good and permanent identification. The aim of this study was to evaluate the effects of amputating the tip of the tail to obtain a biopsy for genetic analysis and of ink tattooing on welfare in C57BL/6J mice, a strain often used as genetic background for transgenes. The behaviour of the animals, fluctuating asymmetry (FA, a measure of developmental instability) and the level of restitution in the remaining part of the tail were evaluated and used for an assessment of the impact of these procedures on the welfare of the animals. One group of mice was marked by tail tattooing at various ages. Another group of mice were tail amputated at 12 or 20 days of age. Body weight and FA were followed, and at the end of the experiment, the level of fear/anxiety was assessed using a light-dark box. In the group of tail-amputated animals observation of climbing behaviour and a beam walking test for balance was performed. Seven weeks after tail amputation, the animals were euthanized. The remaining part of the tail was evaluated histopathologically. Body weight, behaviour in the light-dark box and balance test results were not influenced by tail amputation or tattooing. FA was only transiently increased by tattooing. Climbing behaviour was reduced just after tail amputation at 20 days of age. No signs of neuromas were found in the amputated tails, but seven weeks after amputation a significant number of mice did not have fully regenerated glandular tissue and hair follicles in the tail. It is concluded that both tail amputation and tail tattooing seem to have minor short-term negative effects on welfare and that the tissues on the tail probably do not regenerate fully after amputation.

Restoration with pioneer plants changes soil properties and remodels the diversity and structure of bacterial communities in rhizosphere and bulk soil of copper mine tailings in Jiangxi Province, China.

PubMed

Sun, Xiaoyan; Zhou, Yanling; Tan, Yinjing; Wu, Zhaoxiang; Lu, Ping; Zhang, Guohua; Yu, Faxin

2018-05-25

To unravel the ecological function played by pioneer plants in the practical restoration of mine tailings, it is vital to explore changes of soil characteristics and microbial communities in rhizosphere and bulk soil following the adaptation and survival of plants. In the present study, the diversity and structure of rhizospheric bacterial communities of three pioneer plants in copper mine tailings were investigated by Illumina MiSeq sequencing, and the effects of pioneer plants on soil properties were also evaluated. Significant soil improvement was detected in rhizospheric samples, and Alnus cremastogyne showed higher total organic matter, total nitrogen, and available phosphorus than two other herbaceous plants. Microbial diversity indices in rhizosphere and bulk soil of reclaimed tailings were significantly higher than bare tailings, even the soil properties of bulk soil in reclaimed tailings were not significantly different from those of bare tailings. A detailed taxonomic composition analysis demonstrated that Alphaproteobacteria and Deltaproteobacteria, Chloroflexi, Acidobacteria, and Gemmatimonadetes showed significantly higher relative abundance in rhizosphere and bulk soil. In contrast, Gammaproteobacteria and Firmicutes were abundant in bare tailings, in which Bacillus, Pseudomonas, and Lactococcus made up the majority of the bacterial community (63.04%). Many species within known heavy metal resistance and nutrient regulatory microorganism were identified in reclaimed tailings, and were more abundant among rhizospheric microbes. Hierarchical clustering and principal coordinate analysis (PCoA) analysis demonstrated that the bacterial profiles in the rhizosphere clustered strictly together according to plant types, and were distinguishable from bulk soil. However, we also identified a large shared OTUs that occurred repeatedly and was unaffected by highly diverse soil properties in rhizosphere and bulk samples. Redundancy analysis indicated that water content and Cu and As concentrations were the main environmental regulators of microbial composition. These results suggest that the interactive effect of pioneer plants and harsh soil environmental conditions remodel the specific bacterial communities in rhizosphere and bulk soil in mine tailings. And A. cremastogyne might be approximate candidate for phytoremediation of mine tailings for better soil amelioration effect and relative higher diversity of bacterial community in rhizosphere.

Hybird state of the tail mangetic configuration during steady convection events

NASA Technical Reports Server (NTRS)

Sergeev, V. A.; Pulkkinen, T. I.; Pellinen, T. I.; Tsyganenko, N. A.

1994-01-01

Previous observations have shown that during periods of steady magnetospheric convection (SMC) a large amount of magnetic flux crosses the plasma sheet (corresponding to approximately 10 deg wide auroral oval at the nightside) and that the magnetic configuration in the midtail is relaxed (the curent sheet is thick and contains enhanced B(sub Z). These signatures are typical for the substorm recovery phase. Using near-geostationary magnetic field data, magnetic field modeling and a noval diagostic technique (isotropic boundary algorithm), we show that in the near-Earth tail the magnetic confirguration is very stretched during the SMC events. This stretching is caused by an intense, thin westward current. Because of the srongly depressed B(sub Z), there is a large radial gradient in the near-tail magetic field. These signatures have been peviously associated only with the substorm growth phase. Our results indicate that during the SMC periods the magnetic configuration is very peculiar, with co-existing thin near-Earth current sheet and thick midtail plasma sheet. The deep local minimum of the equatorial B(sub Z) that devleops at R approximately 12 R(sub E) is consistent with steady, adiabatic, Earthward convection in the midtail. These results impose contraints on the existing substorm theories, and call for an explanation of how such a stressed configuration can persist for such a long time without tail current disruptions that occur at the end of a substorm growth phase.

Using White-tailed Deer (Odocoileus virginianus) in Infectious Disease Research

PubMed Central

Palmer, Mitchell V; Cox, Rebecca J; Waters, W Ray; Thacker, Tyler C; Whipple, Diana L

2017-01-01

Between 1940 and 2004, more than 335 emerging infectious disease events were reported in the scientific literature. The majority (60%) of these events involved zoonoses, most of which (72%) were of wildlife origin or had an epidemiologically important wildlife host. Because this trend of increasing emerging diseases likely will continue, understanding the pathogenesis, transmission, and diagnosis of these diseases in the relevant wildlife host is paramount. Achieving this goal often requires using wild animals as research subjects, which are vastly different from the traditional livestock or laboratory animals used by most universities and institutions. Using wildlife in infectious disease research presents many challenges but also provides opportunities to answer questions impossible to address by using traditional models. Cervid species, especially white-tailed deer (Odocoileus virginianus), elk (Cervus canadensis), and red deer (Cervus elaphus), are hosts or sentinels for several important pathogens, some of which are zoonotic. The long history of infectious disease research using white-tailed deer, conducted at ever-increasing levels of sophisticated biosecurity, demonstrates that this type of research can be conducted safely and that valuable insights can be gained. The greatest challenges to using wildlife in infectious disease research include animal source, facility design, nutrition, animal handling, and enrichment and other practices that both facilitate animal care and enhance animal wellbeing. The study of Mycobacterium bovis infection in white-tailed deer at the USDA's National Animal Disease Center serves to illustrate one approach to address these challenges. PMID:28724483

Positive human contact on the first day of life alters the piglet's behavioural response to humans and husbandry practices.

PubMed

Muns, Ramon; Rault, Jean-Loup; Hemsworth, Paul

2015-11-01

This experiment examined the effects of positive human contact at suckling on the first day of life on the behavioural and physiological responses of piglets to both humans and routine husbandry procedures. Forty litters from multiparous sows were randomly allocated to one of two treatments: Control (CC, minimal human interaction with day-old piglets) or Positive Contact (PC, human talking and caressing piglets during 6 suckling bouts on their first day of life, day 1). In each litter, 2 males and 2 females were randomly selected and their behavioural responses to tail docking (day 2), and to an experimenter (day 35) were studied. Escape behaviour at tail docking was assessed according to intensity (on a scale from 0 to 4 representing no movement to high intensity movement) and duration (on a scale from 0 to 3 representing no movement to continuous movement). At day 15 of age, a human approach and avoidance test was performed on focal piglets and at day 15, escape behaviour to capture before and after testing was recorded again. Blood samples for cortisol analysis were obtained from the focal piglets 30 min after tail docking and 1 h after weaning. Escape behaviour to tail docking of the PC piglets was of shorter duration than that of the CC piglets (P = 0.05). There was a tendency for the escape behaviour both before and after testing at day 15 to be of a lower intensity (P = 0.11 and P = 0.06, respectively) and a shorter duration (P = 0.06 and P = 0.08, respectively) in the PC piglets. There was a tendency for PC piglets to have higher cortisol concentrations after tail docking than the CC piglets (P = 0.07). Male piglets had higher cortisol concentrations after tail docking and after weaning than female piglets (P = 0.02 and P = 0.03). The results indicate that Positive Contact treatment reduced the duration of escape behaviour of piglets to tail docking. The role of classical conditioning, habituation and developmental changes in the observed effects of the Positive Contact treatment is unclear. Nonetheless, this experiment demonstrated that brief positive human contacts early in life can alter the behavioural responses of piglets to subsequent stressful events.

Temporal Evolution of the Morphological Tail Structures of Comet P/Halley 1910 II

NASA Astrophysics Data System (ADS)

Izaguirre, L. S.; Voelzke, M. R.

2004-08-01

Eight hundred and eighty six images from September 1909 to May 1911 are analysed for the purpose of identifying, measuring and correlating the morphological structures along the plasma tail of P/Halley. These images are from the Atlas of Comet Halley 1910 II (Donn et al., 1986). A systematic visual analysis revealed 304 wavy structures (Yi et al., 1998) along the main tail and 164 along the secondary tails, 41 solitary waves (solitons) (Roberts, 1985), 13 Swan-like tails (Jockers, 1985), 26 disconnection events (DEs) (Voelzke, 2002a), 166 knots (Voelzke et al., 1997) and six shells (Schulz and Schlosser, 1989). While the wavy structures denote undulations or a train of waves, the solitons refer to the formations usually denominated kinks (Tomita et al., 1987). In general, it is possible to associate the occurrence of a DE and/or a Swan-Tail with the occurrence of a knot, but the last one may occur independently. It is also possible to say that the solitons occur in association with the wavy structures, but the reverse is not true. The 26 DEs documented in 26 different images allowed the derivation of two onsets of DEs, i.e., the time when the comet supposedly crossed a frontier between magnetic sectors of the solar wind (Brandt and Snow, 2000). Both onsets of DEs were determined after the perihelion passage with an average of the corrected velocities Vc equal to (57 ± 15) km s-1. The mean value of the corrected wavelength lc measured in 70 different wavy structures is equal to (1.7 ± 0.1) x 10^6 km and the mean amplitude A of the wave (measured in the same 70 wavy structures cited above) is equal to (1.4 ± 0.1) x 10^5 km. The mean value of the corrected cometocentric phase velocity Vpc measured in 20 different wavy structures is equal to (168 ± 28) km s-1. The average value of the corrected velocities Vkc of the knots measured in 36 different images is equal to (128 ± 12) km s-1. There is a tendency for A and lc to increase with increasing cometocentric distance. The preliminary results of this work agree with the earlier research from Voelzke and Matsuura (1998), which analysed comet P/Halley's tail structures in its last apparition in 1986.

Embryo developmental events and the egg case of the Aleutian skate Bathyraja aleutica (Gilbert) and the Alaska skate Bathyraja parmifera (Bean).

PubMed

Hoff, G R

2009-02-01

Embryo development events were correlated with egg-case changes for the Aleutian skate Bathyraja aleutica and the Alaska skate Bathyraja parmifera. Yolk absorption underwent two phases: that of steady absorption during early development and that of rapid yolk absorption during the final development stages. Total length (L(T)) for 50% of the pre-hatching embryos egg-case jelly disappearance was 92.04 mm (range 81-102 mm) and 99.36 mm (range 81-100 mm) for B. aleutica and B. parmifera, respectively, allowing the inner chamber to open to seawater flow. The tail filament underwent three phases of growth: rapid elongation during early development (<100 mm embryo L(T)), stasis of tail filament length during the remainder of embryo development and rapid absorption soon after hatching. Complete tail filament development coincided with the disappearance of egg-case jelly. Clasper buds first developed at embryos >70 mm L(T) for both species and the sex ratio was 1:1 well before hatching. Egg cases that were devoid of an ova or developing embryo were c. 5.0 and 6.5% of the egg cases examined for B. aleutica and B. parmifera, respectively. Measurements showed that egg cases containing only egg jelly were smaller in both width and length than those possessing an ova. Embryo stages were punctuated with distinct events that correlated with egg case changes controlling the internal environment of the developing embryo.

Rapidly assessing the probability of exceptionally high natural hazard losses

NASA Astrophysics Data System (ADS)

Gollini, Isabella; Rougier, Jonathan

2014-05-01

One of the objectives in catastrophe modeling is to assess the probability distribution of losses for a specified period, such as a year. From the point of view of an insurance company, the whole of the loss distribution is interesting, and valuable in determining insurance premiums. But the shape of the righthand tail is critical, because it impinges on the solvency of the company. A simple measure of the risk of insolvency is the probability that the annual loss will exceed the company's current operating capital. Imposing an upper limit on this probability is one of the objectives of the EU Solvency II directive. If a probabilistic model is supplied for the loss process, then this tail probability can be computed, either directly, or by simulation. This can be a lengthy calculation for complex losses. Given the inevitably subjective nature of quantifying loss distributions, computational resources might be better used in a sensitivity analysis. This requires either a quick approximation to the tail probability or an upper bound on the probability, ideally a tight one. We present several different bounds, all of which can be computed nearly instantly from a very general event loss table. We provide a numerical illustration, and discuss the conditions under which the bound is tight. Although we consider the perspective of insurance and reinsurance companies, exactly the same issues concern the risk manager, who is typically very sensitive to large losses.

An Analysis of the Effects of Wing Aspect Ratio and Tail Location on Static Longitudinal Stability Below the Mach Number of Lift Divergence

NASA Technical Reports Server (NTRS)

Axelson, John A.; Crown, J. Conrad

1948-01-01

An analysis is presented of the influence of wing aspect ratio and tail location on the effects of compressibility upon static longitudinal stability. The investigation showed that the use of reduced wing aspect ratios or short tail lengths leads to serious reductions in high-speed stability and the possibility of high-speed instability.

WAITING TIME DISTRIBUTION OF SOLAR ENERGETIC PARTICLE EVENTS MODELED WITH A NON-STATIONARY POISSON PROCESS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, C.; Su, W.; Fang, C.

2014-09-10

We present a study of the waiting time distributions (WTDs) of solar energetic particle (SEP) events observed with the spacecraft WIND and GOES. The WTDs of both solar electron events (SEEs) and solar proton events (SPEs) display a power-law tail of ∼Δt {sup –γ}. The SEEs display a broken power-law WTD. The power-law index is γ{sub 1} = 0.99 for the short waiting times (<70 hr) and γ{sub 2} = 1.92 for large waiting times (>100 hr). The break of the WTD of SEEs is probably due to the modulation of the corotating interaction regions. The power-law index, γ ∼more » 1.82, is derived for the WTD of the SPEs which is consistent with the WTD of type II radio bursts, indicating a close relationship between the shock wave and the production of energetic protons. The WTDs of SEP events can be modeled with a non-stationary Poisson process, which was proposed to understand the waiting time statistics of solar flares. We generalize the method and find that, if the SEP event rate λ = 1/Δt varies as the time distribution of event rate f(λ) = Aλ{sup –α}exp (– βλ), the time-dependent Poisson distribution can produce a power-law tail WTD of ∼Δt {sup α} {sup –3}, where 0 ≤ α < 2.« less

Energetic particles in the jovian magnetotail.

PubMed

McNutt, R L; Haggerty, D K; Hill, M E; Krimigis, S M; Livi, S; Ho, G C; Gurnee, R S; Mauk, B H; Mitchell, D G; Roelof, E C; McComas, D J; Bagenal, F; Elliott, H A; Brown, L E; Kusterer, M; Vandegriff, J; Stern, S A; Weaver, H A; Spencer, J R; Moore, J M

2007-10-12

When the solar wind hits Jupiter's magnetic field, it creates a long magnetotail trailing behind the planet that channels material out of the Jupiter system. The New Horizons spacecraft traversed the length of the jovian magnetotail to >2500 jovian radii (RJ; 1 RJ identical with 71,400 kilometers), observing a high-temperature, multispecies population of energetic particles. Velocity dispersions, anisotropies, and compositional variation seen in the deep-tail (greater, similar 500 RJ) with a approximately 3-day periodicity are similar to variations seen closer to Jupiter in Galileo data. The signatures suggest plasma streaming away from the planet and injection sites in the near-tail region (approximately 200 to 400 RJ) that could be related to magnetic reconnection events. The tail structure remains coherent at least until it reaches the magnetosheath at 1655 RJ.

Design, permitting, and construction issues associated with closure of the Panna Maria uranium tailings impoundment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Strachan, C.L.; Raabe, K.L.

1997-12-31

In 1992, Panna Maria Uranium Operations (PMUO) initiated licensing and engineering activities for closure of the Panna Maria mill and 150-acre tailings impoundment located in southeast Texas. Closure of the tailings impoundment is permitted by license amendment through the Texas Natural Resources Conservation Commission (TNRCC), and based on closure criteria outlined in Texas regulations. The closure plan for the Panna Maria tailings impoundment was submitted for Texas regulatory agency review in April 1993, with details of the closure plan modified in 1994, 1995, and 1996. The closure plan included a multi-layered cover over the regraded tailings surface which was designedmore » for long-term isolation of tailings, reduction of radon emanation to regulated levels, and reduction of infiltration to TNRCC-accepted levels. The cover and embankment slope surfaces and surrounding areas were designed to provide acceptable erosional stability as compared to runoff velocities from the Probable Maximum Precipitation event. Cover materials were selected from on-site materials and evaluated for suitability based on permeability, radon attenuation, and soil dispersivity characteristics. Off-site materials were used when necessary. The cover over the tailings has a maximum slope of 0.5 percent, and the regraded embankment slopes outside the perimeter of the impoundment have a maximum slope of 20 percent. All reclaimed slopes are covered with topsoil and revegetated. A riprap-lined channel is to be used to convey runoff from within the perimeter of the reclaimed impoundment to the north of the impoundment.« less

The RNA-binding protein xCIRP2 is involved in apoptotic tail regression during metamorphosis in Xenopus laevis tadpoles.

PubMed

Eto, Ko; Iwama, Tomoyuki; Tajima, Tatsuya; Abe, Shin-ichi

2012-10-01

Frog metamorphosis induced by thyroid hormone (TH) involves not only cell proliferation and differentiation in reconstituted organs such as limbs, but also apoptotic cell death in degenerated organs such as tails. However, the molecular mechanisms directing the TH-dependent cell fate determination remain unclear. We have previously identified from newts an RNA-binding protein (nRBP) acting as the regulator governing survival and death in germ cells during spermatogenesis. To investigate the molecular events leading the tail resorption during metamorphosis, we analyzed the expression, the functional role in apoptosis, and the regulation of xCIRP2, a frog homolog of nRBP, in tails of Xenopus laevis tadpoles. At the prometamorphic stage, xCIRP2 protein is expressed in fibroblast, epidermal, nerve, and muscular cells and localized in their cytoplasm. When spontaneous metamorphosis progressed, the level of xCIRP2 mRNA remained unchanged but the amount of the protein decreased. In organ cultures of tails at the prometamorphic stage, xCIRP2 protein decreased before their lengths shortened during TH-dependent metamorphosis. The inhibition of calpain or proteasome attenuated the TH-induced decrease of xCIRP2 protein in tails, impairing their regression. These results suggest that xCIRP2 protein is downregulated through calpain- and proteasome-mediated proteolysis in response to TH at the onset of metamorphosis, inducing apoptosis in tails and thereby degenerating them. Copyright © 2012 Elsevier Inc. All rights reserved.

Two-Dimensional Fourier Transform Analysis of Helicopter Flyover Noise

NASA Technical Reports Server (NTRS)

SantaMaria, Odilyn L.; Farassat, F.; Morris, Philip J.

1999-01-01

A method to separate main rotor and tail rotor noise from a helicopter in flight is explored. Being the sum of two periodic signals of disproportionate, or incommensurate frequencies, helicopter noise is neither periodic nor stationary. The single Fourier transform divides signal energy into frequency bins of equal size. Incommensurate frequencies are therefore not adequately represented by any one chosen data block size. A two-dimensional Fourier analysis method is used to separate main rotor and tail rotor noise. The two-dimensional spectral analysis method is first applied to simulated signals. This initial analysis gives an idea of the characteristics of the two-dimensional autocorrelations and spectra. Data from a helicopter flight test is analyzed in two dimensions. The test aircraft are a Boeing MD902 Explorer (no tail rotor) and a Sikorsky S-76 (4-bladed tail rotor). The results show that the main rotor and tail rotor signals can indeed be separated in the two-dimensional Fourier transform spectrum. The separation occurs along the diagonals associated with the frequencies of interest. These diagonals are individual spectra containing only information related to one particular frequency.

Chromaticity effects on head-tail instabilities for broadband impedance using two particle model, Vlasov analysis, and simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chin, Yong Ho; Chao, Alexander Wu; Blaskiewicz, Michael M.

Effects of the chromaticity on head-tail instabilities for broadband impedances are comprehensively studied, using the two particle model, the Vlasov analysis and computer simulations. We show both in the two particle model and the Vlasov analysis with the trapezoidal (semiconstant) wake model that we can derive universal contour plots for the growth factor as a function of the two dimensionless parameters: the wakefield strength, Υ, and the difference of the betatron phase advances between the head and the tail, χ. They reveal how the chromaticity affects strong head-tail instabilities and excites head-tail instabilities. We also apply the LEP (Large Electron-Positronmore » Collider) broadband resonator model to the Vlasov approach and find that the results are in very good agreement with those of the trapezoidal wake model. The theoretical findings are also reinforced by the simulation results. In conclusion, the trapezoidal wake model turns out to be a very useful tool since it significantly simplifies the time domain analysis and provides well-behaved impedance at the same time.« less

Chromaticity effects on head-tail instabilities for broadband impedance using two particle model, Vlasov analysis, and simulations

DOE PAGES

Chin, Yong Ho; Chao, Alexander Wu; Blaskiewicz, Michael M.; ...

2017-07-28

Effects of the chromaticity on head-tail instabilities for broadband impedances are comprehensively studied, using the two particle model, the Vlasov analysis and computer simulations. We show both in the two particle model and the Vlasov analysis with the trapezoidal (semiconstant) wake model that we can derive universal contour plots for the growth factor as a function of the two dimensionless parameters: the wakefield strength, Υ, and the difference of the betatron phase advances between the head and the tail, χ. They reveal how the chromaticity affects strong head-tail instabilities and excites head-tail instabilities. We also apply the LEP (Large Electron-Positronmore » Collider) broadband resonator model to the Vlasov approach and find that the results are in very good agreement with those of the trapezoidal wake model. The theoretical findings are also reinforced by the simulation results. In conclusion, the trapezoidal wake model turns out to be a very useful tool since it significantly simplifies the time domain analysis and provides well-behaved impedance at the same time.« less

A cross-sectional study for predicting tail biting risk in pig farms using classification and regression tree analysis.

PubMed

Scollo, Annalisa; Gottardo, Flaviana; Contiero, Barbara; Edwards, Sandra A

2017-10-01

Tail biting in pigs has been an identified behavioural, welfare and economic problem for decades, and requires appropriate but sometimes difficult on-farm interventions. The aim of the paper is to introduce the Classification and Regression Tree (CRT) methodologies to develop a tool for prevention of acute tail biting lesions in pigs on-farm. A sample of 60 commercial farms rearing heavy pigs were involved; an on-farm visit and an interview with the farmer collected data on general management, herd health, disease prevention, climate control, feeding and production traits. Results suggest a value for the CRT analysis in managing the risk factors behind tail biting on a farm-specific level, showing 86.7% sensitivity for the Classification Tree and a correlation of 0.7 between observed and predicted prevalence of tail biting obtained with the Regression Tree. CRT analysis showed five main variables (stocking density, ammonia levels, number of pigs per stockman, type of floor and timeliness in feed supply) as critical predictors of acute tail biting lesions, which demonstrate different importance in different farms subgroups. The model might have reliable and practical applications for the support and implementation of tail biting prevention interventions, especially in case of subgroups of pigs with higher risk, helping farmers and veterinarians to assess the risk in their own farm and to manage their predisposing variables in order to reduce acute tail biting lesions. Copyright © 2017 Elsevier B.V. All rights reserved.

Evaluation of Statistical Downscaling Skill at Reproducing Extreme Events

NASA Astrophysics Data System (ADS)

McGinnis, S. A.; Tye, M. R.; Nychka, D. W.; Mearns, L. O.

2015-12-01

Climate model outputs usually have much coarser spatial resolution than is needed by impacts models. Although higher resolution can be achieved using regional climate models for dynamical downscaling, further downscaling is often required. The final resolution gap is often closed with a combination of spatial interpolation and bias correction, which constitutes a form of statistical downscaling. We use this technique to downscale regional climate model data and evaluate its skill in reproducing extreme events. We downscale output from the North American Regional Climate Change Assessment Program (NARCCAP) dataset from its native 50-km spatial resolution to the 4-km resolution of University of Idaho's METDATA gridded surface meterological dataset, which derives from the PRISM and NLDAS-2 observational datasets. We operate on the major variables used in impacts analysis at a daily timescale: daily minimum and maximum temperature, precipitation, humidity, pressure, solar radiation, and winds. To interpolate the data, we use the patch recovery method from the Earth System Modeling Framework (ESMF) regridding package. We then bias correct the data using Kernel Density Distribution Mapping (KDDM), which has been shown to exhibit superior overall performance across multiple metrics. Finally, we evaluate the skill of this technique in reproducing extreme events by comparing raw and downscaled output with meterological station data in different bioclimatic regions according to the the skill scores defined by Perkins et al in 2013 for evaluation of AR4 climate models. We also investigate techniques for improving bias correction of values in the tails of the distributions. These techniques include binned kernel density estimation, logspline kernel density estimation, and transfer functions constructed by fitting the tails with a generalized pareto distribution.

Helicity in the dynamic magnetotail

NASA Astrophysics Data System (ADS)

Buchert, Stephan

Observations of substorms typically feature a clear azimuthal or east-west asymmetry which has been described in expressions like for example westward-traveling surge. The origin of this asymmetry is not clear. Candidates are the Hall effect, either in the ionosphere, or in magnetic reconnection, and self-induction when Hall currents change in time. The magnetic helicity in the tail measured by the Cluster satellites shows a clear preference during dynamic events, that we have studied. We discuss possible causes of this non-zero helicity and whether it is related to east-west assymmetric tail dynamics.

Pig carcass tail lesions: the influence of record keeping through an advisory service and the relationship with farm performance parameters.

PubMed

van Staaveren, N; Teixeira, D L; Hanlon, A; Boyle, L A

2017-01-01

Tail lesions are important pig welfare indicators that could be recorded during meat inspection as they are more visible on the carcass than on the live animal. Tail biting is associated with reduced performance in the bitten pig, but it is not clear whether problems with tail biting are reflected in general farm performance figures. Farm advisory services aim to improve farm productivity which could be associated with improvements in pig welfare. Record keeping forms an integral part of such advisory services. The aim of this study was to examine the influence of record keeping in the Teagasc eProfit Monitor (ePM herds) on the prevalence of tail lesion severity scores in Irish slaughter pigs. In addition, we investigated associations between the prevalence of tail lesion scores and production parameters at farm level in ePM herds. Pigs were observed after scalding/dehairing and tail lesion score (0 to 4), sex and farm identification were recorded. Tail lesion scores were collapsed into none/mild lesions (score ⩽1), moderate lesions (score 2) and severe lesions (score ⩾3). The effect of record keeping (ePM herd) on the different tail lesion outcomes was analysed at batch level using the events/trials structure in generalized linear mixed models (PROC GLIMMIX). Spearman's rank correlations were calculated between average tail lesion score of a batch and production parameters. A total of 13 133 pigs were assessed from 73 batches coming from 61 farms. In all, 23 farms were identified as ePM herds. The average prevalence of moderate tail lesions was 26.8% and of severe tail lesions was 3.4% in a batch. Batches coming from ePM herds had a lower prevalence of moderate tail lesions than non-ePM herds (P<0.001). Average tail lesion score was negatively associated with age (P<0.05) and weight (P<0.05) at sale/transfer of weaners, and tended to be positively associated with the number of finishing days (P=0.06). In addition, the prevalence of severe tail lesions was negatively associated with average daily gain in weaners (P<0.05) and tended to do so with average daily gain in finishers (P=0.08). This study provides the first indication that record keeping through an advisory service may help to lower the risk of tail biting, which is associated with improved farm performance.

Does the dwarf galaxy system of the Milky Way originate from Andromeda?

NASA Astrophysics Data System (ADS)

Fouquet, Sylvain; Hammer, François; Yang, Yanbin; Puech, Mathieu; Flores, Hector

2012-12-01

The Local Group is often seen to be a quiescent environment without significant merger events. However, an ancient major merger may have occurred in the most massive galaxy as suggested by the M31 classical bulge and its halo haunted by numerous stellar streams. Numerical simulations have shown that tidal tails formed during gas-rich major mergers are long-lived and could be responsible for old stellar streams and likely induce the formation of tidal dwarf galaxies (TDGs). Using several hydrodynamical simulations we have investigated the most prominent tidal tail formed during the first passage, which is gas rich and contains old and metal-poor stars. We discovered several striking coincidences after comparing its location and motion to those of the Milky Way (MW) and of the Magellanic Clouds (MCs). First, the tidal tail is sweeping a relatively small volume in which the MW precisely lies. Because the geometry of the merger is somehow fixed by the anisotropic properties of the giant stream (GS), we evaluate the chance of the MW to be at such a rendezvous with this gigantic tidal tail to be 5 per cent. Secondly, the velocity of the tidal tail matches the Large Magellanic Cloud (LMC) proper motion, and reproduces quite well the geometrical and angular momentum properties of the MW dwarfs, that is, the so-called disc of satellites, also known as the vast polar structure (VPOS). Thirdly, the simulation of the tidal tail reveals one of the formed TDGs with the mass and location almost comparable to those of the LMC. Our present modelling is, however, too limited to study the detailed interaction of gas-rich TDGs with the potential of the MW, and a complementary study is required to test whether the dwarf intrinsic properties can be accounted for by our scenario. Nevertheless this study suggests a causal link between an expected event, an ancient, gas-rich major merger at the M31 location, and several enigmas in the Local Group, namely the GS in the M31 outskirts, the VPOS almost perpendicular to the MW disc, and the presence of the MCs, two Irr galaxies near the MW.

Does a Local B-Minimum Appear in the Tail Current Sheet During a Substorm Growth Phase?

NASA Astrophysics Data System (ADS)

Sergeev, V. A.; Gordeev, E. I.; Merkin, V. G.; Sitnov, M. I.

2018-03-01

Magnetic configurations with dBz/dr > 0 in the midtail current sheet are potentially unstable to various instabilities associated with the explosive substorm onset. Their existence is hard to confirm with observations of magnetospheric spacecraft. Here we use remote sensing by low-altitude spacecraft that measured the loss cone filling rate during electron-rich solar particle event, providing information about magnetic properties of the tail current sheet. We found a latitudinally localized anisotropic 30 keV electron loss cone region embedded inside an extended region of isotropic solar electron precipitation. It was persistently observed for more than 0.5 h during isolated growth phase event by six Polar Operational Environmental Satellites spacecraft, which crossed the premidnight auroral oval. The embedded anisotropic region was observed 1° poleward of the outer radiation belt boundary over 4-5 h wide magnetic local time sector, suggesting a persistent ridge-type Bz2/j maximum in the equatorial plasma sheet at distances 15-20 RE. We discuss infrequent observations of such events taking into account recent results of global magnetohydrodynamic simulations.

Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu Jun, E-mail: Jun.Liu.1@uth.tmc.edu; Chen Chengyen; Shiomi, Daisuke

2011-09-01

Bacteriophage P1 has a contractile tail that targets the conserved lipopolysaccharide on the outer membrane surface of the host for initial adsorption. The mechanism by which P1 DNA enters the host cell is not well understood, mainly because the transient molecular interactions between bacteriophage and bacteria have been difficult to study by conventional approaches. Here, we engineered tiny E. coli host cells so that the initial stages of P1-host interactions could be captured in unprecedented detail by cryo-electron tomography. Analysis of three-dimensional reconstructions of frozen-hydrated specimens revealed three predominant configurations: an extended tail stage with DNA present in the phagemore » head, a contracted tail stage with DNA, and a contracted tail stage without DNA. Comparative analysis of various conformations indicated that there is uniform penetration of the inner tail tube into the E. coli periplasm and a significant movement of the baseplate away from the outer membrane during tail contraction.« less

Loads Acting on the Mine Conveyance Attachments and Tail Ropes during the Emergency Braking in the Event of an Overtravel

NASA Astrophysics Data System (ADS)

Wolny, Stanisław

2016-09-01

It has now become the common practice among the design engineers that in dimensioning of structural components of conveyances, particularly the load bearing elements, they mostly use methods that do not enable the predictions of their service life, instead they rely on determining the safety factor related to the static loads exclusively. In order to solve the problem, i.e. to derive and verify the key relationships needed to determine the fatigue endurance of structural elements of conveyances expressed in the function of time and taking into account the type of hoisting gear, it is required that the values of all loads acting upon the conveyance should be determined, including those experienced under the emergency conditions, for instance during the braking phase in the event of overtravel. This study relies on the results of dynamic analysis of a hoisting installation during the braking phase when the conveyance approaches the topmost or lowermost levels. For the assumed model of the system, the equations of motion are derived for the hoisting and tail rope elements and for the elastic strings. The section of the hoisting rope between the full conveyance approaching the top station and the Keope pulley is substituted by a spring with the constant elasticity coefficient, equal to that of the rope section at the instant the conveyance begins the underwind travel. Recalling the solution to the wave equation, analytical formulas are provided expressing the displacements of any cross-profiles of hoisting and tail ropes, including the conveyance attachments and tail ropes, in the function of braking forces applied to conveyances in the overtravel path and operational parameters of the hoisting gear. Besides, approximate formulas are provided yielding: loading of the hoisting rope segment between the conveyance braking in the headgear tower and the Keope pulley deceleration of the conveyance during the braking phase. The results will be utilised to derive the function governing the conveyance load variations during the emergency braking, depending on the parameters of the hoisting installations and the braking systems. These relationships are required for adequate design of the frictional contact between the ropes and the pulley and will become the basic criteria for dimensioning and design of load-bearing components of conveyances in the context of improving their reliability and safety features.

AKARI observations of dust processing in merger galaxies: NGC2782 and NGC7727

NASA Astrophysics Data System (ADS)

Onaka, Takashi; Nakamura, Tomohiko; Sakon, Itsuki; Ohsawa, Ryou; Mori, Tamami; Wu, Ronin; Kaneda, Hidehiro

2015-08-01

Dust grains are the major reservoir of heavy elements and play significant roles in the thermal balance and chemistry in the interstellar medium. Where dust grains are formed and how they evolve in the ISM are one of the key issues for the understanding of the material evolution in the Universe. Although theoretical studies have been made, very little is so far known observationally about the lifecycle of dust grains in the ISM and that associated with Galactic scale events. The lifecycle of very small carbonaceous grains that contain polycyclic aromatic hydrocarbons (PAHs) or PAH-like atomic groups are of particular interest because they emit distinct band emission in the near- to mid-infrared region and they are thought to be most vulnerable to environmental conditions. PAHs may be formed in carbon-rich stars, while recent AKARI observations suggest that they may be formed by fragmentation of large carbonaceous grains in shocks in a supernova remnant or a galactic wind (Onaka et al. 2010, A&A, 514, 15; Seok et al. 2012, ApJ, 744, 160).Here we report results of AKARI observations of two mergers. NGC2782 (Arp 215) and NGC7727 (Arp 222). NGC2782 is a merger of 200Myr old. It shows a very long western tail of HI gas by a tidal interaction and the eastern tail that consists mainly of stellar components without an appreciable amount of gas and is thought to be a relic of the colliding low-mass galaxy whose gas component has been stripped off Smith 1994, AJ, 107, 1695. We found significant emission at the 7 μm band of the IRC onboard AKARI, which must come from PAH 6.2 and 7.7 μm bands, in the eastern tail. Based on dust model fitting, we found a low abundance of ~10nm size dust despite of the presence of PAHs, suggesting that PAHs may be formed from fragmentation of ~10nm carbonaceous dust grains. NGC7727 is a 1.2Gyr old merger and shows a SED similar to the NGC2782 tail in the northern tail of the merger event product, suggesting also the formation of PAHs from fragmentation. The observations of both galaxies indicate that PAHs can survive in violent events. We discuss these results in relation to the PAH formation and destruction.

Life Cycle Characterization of Sulfolobus Monocaudavirus 1, an Extremophilic Spindle-Shaped Virus with Extracellular Tail Development

PubMed Central

Uldahl, Kristine B.; Jensen, Signe B.; Bhoobalan-Chitty, Yuvaraj; Martínez-Álvarez, Laura; Papathanasiou, Pavlos

2016-01-01

ABSTRACT We provide here, for the first time, insights into the initial infection stages of a large spindle-shaped archaeal virus and explore the following life cycle events. Our observations suggest that Sulfolobus monocaudavirus 1 (SMV1) exhibits a high adsorption rate and that virions adsorb to the host cells via three distinct attachment modes: nosecone association, body association, and body/tail association. In the body/tail association mode, the entire virion, including the tail(s), aligns to the host cell surface and the main body is greatly flattened, suggesting a possible fusion entry mechanism. Upon infection, the intracellular replication cycle lasts about 8 h, at which point the virions are released as spindle-shaped tailless particles. Replication of the virus retarded host growth but did not cause lysis of the host cells. Once released from the host and at temperatures resembling that of its natural habitat, SMV1 starts developing one or two tails. This exceptional property of undergoing a major morphological development outside, and independently of, the host cell has been reported only once before for the related Acidianus two-tailed virus. Here, we show that SMV1 can develop tails of more than 900 nm in length, more than quadrupling the total virion length. IMPORTANCE Very little is known about the initial life cycle stages of viruses infecting hosts of the third domain of life, Archaea. This work describes the first example of an archaeal virus employing three distinct association modes. The virus under study, Sulfolobus monocaudavirus 1, is a representative of the large spindle-shaped viruses that are frequently found in acidic hot springs. The results described here will add valuable knowledge about Archaea, the least studied domain in the virology field. PMID:27053548

Life Cycle Characterization of Sulfolobus Monocaudavirus 1, an Extremophilic Spindle-Shaped Virus with Extracellular Tail Development.

PubMed

Uldahl, Kristine B; Jensen, Signe B; Bhoobalan-Chitty, Yuvaraj; Martínez-Álvarez, Laura; Papathanasiou, Pavlos; Peng, Xu

2016-06-15

We provide here, for the first time, insights into the initial infection stages of a large spindle-shaped archaeal virus and explore the following life cycle events. Our observations suggest that Sulfolobus monocaudavirus 1 (SMV1) exhibits a high adsorption rate and that virions adsorb to the host cells via three distinct attachment modes: nosecone association, body association, and body/tail association. In the body/tail association mode, the entire virion, including the tail(s), aligns to the host cell surface and the main body is greatly flattened, suggesting a possible fusion entry mechanism. Upon infection, the intracellular replication cycle lasts about 8 h, at which point the virions are released as spindle-shaped tailless particles. Replication of the virus retarded host growth but did not cause lysis of the host cells. Once released from the host and at temperatures resembling that of its natural habitat, SMV1 starts developing one or two tails. This exceptional property of undergoing a major morphological development outside, and independently of, the host cell has been reported only once before for the related Acidianus two-tailed virus. Here, we show that SMV1 can develop tails of more than 900 nm in length, more than quadrupling the total virion length. Very little is known about the initial life cycle stages of viruses infecting hosts of the third domain of life, Archaea This work describes the first example of an archaeal virus employing three distinct association modes. The virus under study, Sulfolobus monocaudavirus 1, is a representative of the large spindle-shaped viruses that are frequently found in acidic hot springs. The results described here will add valuable knowledge about Archaea, the least studied domain in the virology field. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

MESSENGER and Mariner 10 Flyby Observations of Magnetotail Structure and Dynamics at Mercury

NASA Technical Reports Server (NTRS)

Slavin, James A.; Anderson, Brian Jay; Baker, Daniel N.; Benna, Mehdi; Boardsen, Scott A.; Gold, Robert E.; Ho, George C.; Imber, Suzanne M.; Korth, Haje; Krimigis, Stamatios, M.;

Critical study of current situation of Vrănicioara tailing pond on Cavnicului Valley, risks and consequences

NASA Astrophysics Data System (ADS)

Bud, I.; Duma, S.; Gusat, D.; Pasca, I.; Bud, A.

2017-05-01

In northern Romania, there are numerous tailing ponds, resulting from mining activities that present significant environmental risks. Some of them, including Vrănicioara tailing pond, were the subject of technical projects for ecological rehabilitation. Vrănicioara pond is located on the right side of Cavnic Valley, downstream Cavnic town, about 4 kilometers far. It has about 500 m length and is located parallel to the road linking Baia Sprie and Cavnic localities. Chemical and physical stability of the tailing pond before rehabilitation interest the research, analysis and conclusions were published in several scientific meetings. In addition, close to the pond at less than 100 m, an open pit has developed, exploiting andesite by mining blast, increasing the risk of physical stability by continuous exposure to vibration. This activity currently continues, advancing towards the tailing pond body. The critical study addresses the current state of Vrănicioara Tailing Pond, analysis of some rehabilitation works done incorrectly, analysis of chemical stability that was not a priority during rehabilitation. Research intention is heading to water analysis confirming the existence of acid drainage that was not stopped or at least reduced. The scientific approach is based on the Technical Standards for Waste Deposits, in force in Romania, providing the rules to ensure physical and chemical stability.

Detecting coupled collective motions in protein by independent subspace analysis

NASA Astrophysics Data System (ADS)

Sakuraba, Shun; Joti, Yasumasa; Kitao, Akio

2010-11-01

Protein dynamics evolves in a high-dimensional space, comprising aharmonic, strongly correlated motional modes. Such correlation often plays an important role in analyzing protein function. In order to identify significantly correlated collective motions, here we employ independent subspace analysis based on the subspace joint approximate diagonalization of eigenmatrices algorithm for the analysis of molecular dynamics (MD) simulation trajectories. From the 100 ns MD simulation of T4 lysozyme, we extract several independent subspaces in each of which collective modes are significantly correlated, and identify the other modes as independent. This method successfully detects the modes along which long-tailed non-Gaussian probability distributions are obtained. Based on the time cross-correlation analysis, we identified a series of events among domain motions and more localized motions in the protein, indicating the connection between the functionally relevant phenomena which have been independently revealed by experiments.

Empirical analysis on the human dynamics of blogging behavior on GitHub

NASA Astrophysics Data System (ADS)

Yan, Deng-Cheng; Wei, Zong-Wen; Han, Xiao-Pu; Wang, Bing-Hong

2017-01-01

GitHub is a social collaborative coding platform on which software developers not only collaborate on codes but also share knowledge through blogs using GitHub Pages. In this article, we analyze the blogging behavior of software developers on GitHub Pages. The results show that both the commit number and the inter-event time of two consecutive blogging actions follow heavy-tailed distribution. We further observe a significant variety of activity among individual developers, and a strongly positive correlation between the activity and the power-law exponent of the inter-event time distribution. We also find a difference between the user behaviors of GitHub Pages and other online systems which is driven by the diversity of users and length of contents. In addition, our result shows an obvious difference between the majority of developers and elite developers in their burstiness property.

The Splitting of Double-component Active Asteroid P/2016 J1 (PANSTARRS)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moreno, F.; Pozuelos, F. J.; Novaković, B.

We present deep imaging observations, orbital dynamics, and dust-tail model analyses of the double-component asteroid P/2016 J1 (J1-A and J1-B). The observations were acquired at the Gran Telescopio Canarias (GTC) and the Canada–France–Hawaii Telescope (CFHT) from mid-March to late July of 2016. A statistical analysis of backward-in-time integrations of the orbits of a large sample of clone objects of P/2016 J1-A and J1-B shows that the minimum separation between them occurred most likely ∼2300 days prior to the current perihelion passage, i.e., during the previous orbit near perihelion. This closest approach was probably linked to a fragmentation event of theirmore » parent body. Monte Carlo dust-tail models show that those two components became active simultaneously ∼250 days before the current perihelion, with comparable maximum loss rates of ∼0.7 and ∼0.5 kg s{sup −1}, and total ejected masses of 8 × 10{sup 6} and 6 × 10{sup 6} kg for fragments J1-A and J1-B, respectively. Consequently, the fragmentation event and the present dust activity are unrelated. The simultaneous activation times of the two components and the fact that the activity lasted 6–9 months or longer, strongly indicate ice sublimation as the most likely mechanism involved in the dust emission process.« less

Tail regeneration in Urodela: old model and new perspectives in studies

NASA Astrophysics Data System (ADS)

Grigoryan, E.; Anton, H.; Mitashov, V.

For better understanding of micro-"g" effect on nervous tissue regeneration we have chosen the regeneration of the Urodele tail, because it utilizes many developmental processes and represents the most convenient model for experiments in Space. The special interesting aspect lies in the ability of regenerates to differentiate the spinal cord (SC) and this, in turn, has a potential of practical application. Meanwhile there are conclusive evidences suggesting the production by SC cells the neurotrophic factors promoting cell proliferation and differentiation in growing tail regenerate. Previously our studies on tail regeneration in the adult newt showed that the force of gravity clearly inf luences the events underlying the regeneration. We reported the significant increase of tail regeneration rate and tissue volume of tail regenerates in the newts exposed to real and simulated low "g". In Bion 11 mission animals that were exposed 14 days in microgravity and whose tails were operated two and four weeks before launch demonstrated the regenerates achieved 1.5 - 2 times the volume of those in 1"g" control. Results of this experiment indicated also that the regeneration of central and peripheral neurons and nerve fibers was carrying out faster under low "g" conditions than in 1 "g" control. Similar data were obtained in several experiments remodeling physiological weightlessness by mean of the clinostat. It led us to the hypothesis that the stimulation of tail regeneration is linked with an over activation of neurotrophic factors produced by quickly growing SC neurons. Now we've completed the experiment on tail regeneration in the newts Tr. alpestris subjected to 5 day long clinorotation after 6 days post tail amputation. The rate of primary- and secondary regeneration was evaluated at different time points after treatment. Cell proliferation, differentiation and expression of neurotrophic proteins in SC and other major tissue-type of regenerate were investigated by immunohistochemistry. Results we've just obtained previously support our proposition on the accelerating effect of micro-"g" upon SC regeneration and then of other tail tissue in the newt. The effect, in turn, could be mediated by increased expression of neurotrophins.

Generating Discrete Power-Law Distributions from a Death- Multiple Immigration Population Process

NASA Astrophysics Data System (ADS)

Matthews, J. O.; Jakeman, E.; Hopcraft, K. I.

2003-04-01

We consider the evolution of a simple population process governed by deaths and multiple immigrations that arrive with rates particular to their order. For a particular choice of rates, the equilibrium solution has a discrete power-law form. The model is a generalization of a process investigated previously where immigrants arrived in pairs [1]. The general properties of this model are discussed in a companion paper. The population is initiated with precisely M individuals present and evolves to an equilibrium distribution with a power-law tail. However the power-law tails of the equilibrium distribution are established immediately, so that moments and correlation properties of the population are undefined for any non-zero time. The technique we develop to characterize this process utilizes external monitoring that counts the emigrants leaving the population in specified time intervals. This counting distribution also possesses a power-law tail for all sampling times and the resulting time series exhibits two features worthy of note, a large variation in the strength of the signal, reflecting the power-law PDF; and secondly, intermittency of the emissions. We show that counting with a detector of finite dynamic range regularizes naturally the fluctuations, in effect `clipping' the events. All previously undefined characteristics such as the mean, autocorrelation and probabilities to the first event and time between events are well defined and derived. These properties, although obtained by discarding much data, nevertheless possess embedded power-law regimes that characterize the population in a way that is analogous to box averaging determination of fractal-dimension.

Failure Analysis on Tail Rotor Teeter Pivot Bolt on a Helicopter

NASA Astrophysics Data System (ADS)

Qiang, WANG; Zi-long, DONG

2018-03-01

Tail rotor teeter pivot bolt of a helicopter fractured when in one flight. Failure analysis on the bolt was finished in laboratory. Macroscopic observation of the tailor rotor teeter pivot bolt, macro and microscopic inspection on the fracture surface of the bolt was carried out. Chemical components and metallurgical structure was also carried out. Experiment results showed that fracture mode of the tail rotor teeter pivot bolt is fatigue fracture. Fatigue area is over 80% of the total fracture surface, obvious fatigue band characteristics can be found at the fracture face. According to the results were analyzed from the macroscopic and microcosmic aspects, fracture reasons of the tail rotor teeter pivot bolt were analyzed in detail

Evaluation of metal mobility from copper mine tailings in northern Chile.

PubMed

Lam, Elizabeth J; Gálvez, M E; Cánovas, M; Montofré, I L; Rivero, D; Faz, A

2016-06-01

This work shows the results obtained on a copper mine tailing in the Antofagasta Region, Chile. The tailing was classified as saline-sodic with high concentrations of metals, especially Cu and Fe, with pH 8.4. Our objectives were to (1) compare the physicochemical properties of the tailing with surrounding soils of the mine under study, and (2) evaluate the effect of two amendments (CaCO3 and compost) and their mixtures on Cu(2+), Mn, Fe, Zn, Mg(2+), and K(+) and Ca(2+), SO4 (2-), NO3 (-), and PO4 (3-) leaching. The data obtained were submitted to variance and covariance analysis. The results from the comparison between both substrates showed that in general, the tailing presented greater content of metals. Regarding tailing leaching, pH, electrical conductivity (EC), and concentration of the elements of interest were measured. The statistical analysis showed that Cu(2+) leaching and immobilization of Fe occurred to the greatest extent with compost. The EC decreased throughout the experiment with irrigation and increased upon treatment with compost. The major interactions found among the chemical parameters were (1) tailings without treatment, Cu(2+)/Fe and NO3 (-)/SO4 (2-); (2) tailings treated with CaCO3, Cu(2+)/K(+); (3) tailings treated with compost, NO3 (-)/SO4 (-2) and EC/Cu(2+); and (4) tailings treated with both amendments, EC/Fe and Cu(2+)/Fe. The ANOVA showed that the number of irrigations and the amendments statistically significantly affected the copper mobility and the organic amendment significantly influenced the iron mobility.

75 FR 60735 - Proposed Issuance of Incidental Take Permits to the Washington Department of Fish and Wildlife...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-10-01

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Comparing regional precipitation and temperature extremes in climate model and reanalysis products

DOE PAGES

Angélil, Oliver; Perkins-Kirkpatrick, Sarah; Alexander, Lisa V.; ...

2016-07-12

A growing field of research aims to characterise the contribution of anthropogenic emissions to the likelihood of extreme weather and climate events. These analyses can be sensitive to the shapes of the tails of simulated distributions. If tails are found to be unrealistically short or long, the anthropogenic signal emerges more or less clearly, respectively, from the noise of possible weather. Here we compare the chance of daily land-surface precipitation and near-surface temperature extremes generated by three Atmospheric Global Climate Models typically used for event attribution, with distributions from six reanalysis products. The likelihoods of extremes are compared for area-averagesmore » over grid cell and regional sized spatial domains. Results suggest a bias favouring overly strong attribution estimates for hot and cold events over many regions of Africa and Australia, and a bias favouring overly weak attribution estimates over regions of North America and Asia. For rainfall, results are more sensitive to geographic location. Although the three models show similar results over many regions, they do disagree over others. Equally, results highlight the discrepancy amongst reanalyses products. This emphasises the importance of using multiple reanalysis and/or observation products, as well as multiple models in event attribution studies.« less

Substorms At Jupiter: Galileo Observations of Transient Reconnection in The Near Tail

NASA Technical Reports Server (NTRS)

Russell, C. T.; Khurana, K. K.; Kivelson, M. G.; Huddleston, D. E.

2000-01-01

The magnetic flux content of the Jovian magnetosphere is set by the internal dynamo, but those magnetic field lines are constantly being loaded by heavy ions at the orbit of lo and dragged inexorably outward by the centrifugal force. Vasyliunas has proposed a steady state reconnecting magnetospheric model that sheds plasma islands of zero net magnetic flux and returns nearly empty flux tubes to the inner magnetosphere. The Galileo observations indicate that beyond 40 Rj the current sheet begins to tear and beyond 50 Rj on the nightside explosively reconnects as the tearing site reaches the low density lobe region above and below the current sheet. Small events occur irregularly but on average about every 4 hours and large events about once a day. The magnetic flux reconnected in such events amounts up to about 70,000 Webers/sec and is sufficient to return the outwardly convected magnetic flux to the inner magnetosphere. Since this process releases plasmoids into the jovian tail, as do terrestrial substorms; since this process involves explosive reconnection across the current sheet on the nightside of the planet, as do terrestrial substorms; and since the process is a key in closing the circulation pattern of the magnetic and plasma flux, as it is in terrestrial substorms; we refer to these events as jovian substorms.

Recycling of asbestos tailings used as reinforcing fillers in polypropylene based composites.

PubMed

Zhai, Wensi; Wang, Yao; Deng, Yuan; Gao, Hongli; Lin, Zhen; Li, Mao

2014-04-15

In this work, asbestos tailings were recycled and used as reinforcing fillers to enhance the mechanical properties of polypropylene (PP). A silane coupling agent was used to chemically modify the asbestos tailings to increase the compatibility between asbestos tailings and polypropylene matrix. Both raw and chemically treated asbestos tailings with different loading levels (from 3 to 30 wt%) were utilized to fabricate composites. Mechanical properties of these composites have been investigated by dynamic mechanical analysis, tensile test and notched impact test. Results showed that hybridization of asbestos tailings in the composites enhanced the mechanical properties of neat PP evidently, and treated asbestos tailings/PP composites yielded even better mechanical properties compared with those of raw asbestos tailings/PP composites. This recycling method of asbestos tailings not only reduces disposal costs and avoids secondary pollution but also produces a new PP-based composite material with enhanced mechanical properties. Copyright © 2014 Elsevier B.V. All rights reserved.

Delayed charge recovery discrimination of passivated surface alpha events in P-type point-contact detectors

NASA Astrophysics Data System (ADS)

Gruszko, J.; Majorana Collaboration

2017-09-01

The Majorana Demonstrator searches for neutrinoless double-beta decay of 76Ge using arrays of high-purity germanium detectors. If observed, this process would demonstrate that lepton number is not a conserved quantity in nature, with implications for grand-unification and for explaining the predominance of matter over antimatter in the universe. A problematic background in such large granular detector arrays is posed by alpha particles. In the Majorana Demonstrator, events have been observed that are consistent with energy-degraded alphas originating on the passivated surface, leading to a potential background contribution in the region-of-interest for neutrinoless double-beta decay. However, it is also observed that when energy deposition occurs very close to the passivated surface, charges drift through the bulk onto that surface, and then drift along it with greatly reduced mobility. This leads to both a reduced prompt signal and a measurable change in slope of the tail of a recorded pulse. In this contribution we discuss the characteristics of these events and the development of a filter that can identify the occurrence of this delayed charge recovery, allowing for the efficient rejection of passivated surface alpha events in analysis.

Quantitative Microbial Community Analysis of Three Different Sulfidic Mine Tailing Dumps Generating Acid Mine Drainage▿

PubMed Central

Kock, Dagmar; Schippers, Axel

2008-01-01

The microbial communities of three different sulfidic and acidic mine waste tailing dumps located in Botswana, Germany, and Sweden were quantitatively analyzed using quantitative real-time PCR (Q-PCR), fluorescence in situ hybridization (FISH), catalyzed reporter deposition-FISH (CARD-FISH), Sybr green II direct counting, and the most probable number (MPN) cultivation technique. Depth profiles of cell numbers showed that the compositions of the microbial communities are greatly different at the three sites and also strongly varied between zones of oxidized and unoxidized tailings. Maximum cell numbers of up to 109 cells g−1 dry weight were determined in the pyrite or pyrrhotite oxidation zones, whereas cell numbers in unoxidized tailings were significantly lower. Bacteria dominated over Archaea and Eukarya at all tailing sites. The acidophilic Fe(II)- and/or sulfur-oxidizing Acidithiobacillus spp. dominated over the acidophilic Fe(II)-oxidizing Leptospirillum spp. among the Bacteria at two sites. The two genera were equally abundant at the third site. The acidophilic Fe(II)- and sulfur-oxidizing Sulfobacillus spp. were generally less abundant. The acidophilic Fe(III)-reducing Acidiphilium spp. could be found at only one site. The neutrophilic Fe(III)-reducing Geobacteraceae as well as the dsrA gene of sulfate reducers were quantifiable at all three sites. FISH analysis provided reliable data only for tailing zones with high microbial activity, whereas CARD-FISH, Q-PCR, Sybr green II staining, and MPN were suitable methods for a quantitative microbial community analysis of tailings in general. PMID:18586975

Quantitative microbial community analysis of three different sulfidic mine tailing dumps generating acid mine drainage.

PubMed

Kock, Dagmar; Schippers, Axel

2008-08-01

The microbial communities of three different sulfidic and acidic mine waste tailing dumps located in Botswana, Germany, and Sweden were quantitatively analyzed using quantitative real-time PCR (Q-PCR), fluorescence in situ hybridization (FISH), catalyzed reporter deposition-FISH (CARD-FISH), Sybr green II direct counting, and the most probable number (MPN) cultivation technique. Depth profiles of cell numbers showed that the compositions of the microbial communities are greatly different at the three sites and also strongly varied between zones of oxidized and unoxidized tailings. Maximum cell numbers of up to 10(9) cells g(-1) dry weight were determined in the pyrite or pyrrhotite oxidation zones, whereas cell numbers in unoxidized tailings were significantly lower. Bacteria dominated over Archaea and Eukarya at all tailing sites. The acidophilic Fe(II)- and/or sulfur-oxidizing Acidithiobacillus spp. dominated over the acidophilic Fe(II)-oxidizing Leptospirillum spp. among the Bacteria at two sites. The two genera were equally abundant at the third site. The acidophilic Fe(II)- and sulfur-oxidizing Sulfobacillus spp. were generally less abundant. The acidophilic Fe(III)-reducing Acidiphilium spp. could be found at only one site. The neutrophilic Fe(III)-reducing Geobacteraceae as well as the dsrA gene of sulfate reducers were quantifiable at all three sites. FISH analysis provided reliable data only for tailing zones with high microbial activity, whereas CARD-FISH, Q-PCR, Sybr green II staining, and MPN were suitable methods for a quantitative microbial community analysis of tailings in general.

Survival rates, mortality causes, and habitats of Pennsylvania white-tailed deer fawns

USGS Publications Warehouse

Vreeland, J.K.; Diefenbach, D.R.; Wallingford, B.D.

2004-01-01

Estimates of survival and cause-specific mortality of white-tailed deer (Odocoileus virginianus) fawns are important to population management. We quantified cause-specific mortality, survival rates, and habitat characteristics related to fawn survival in a forested landscape and an agricultural landscape in central Pennsylvania. We captured and radiocollared neonatal (0.05). Predation accounted for 46.2% (95% Cl = 37.6-56.7%) of 106 mortalities through 34 weeks. We attributed 32.7% (95% Cl = 21.9-48.6%) and 36.7% (95% Cl = 25.5-52.9%) of 49 predation events to black bears (Ursus americanus) and coyotes (Canis latrans], respectively. Natural causes, excluding predation, accounted for 27.4% (95% Cl = 20.1-37.3) of mortalities. Fawn survival in Pennsylvania was comparable to reported survival in forested and agricultural regions in northern portions of the white-tailed deer range. We have no evidence to suggest that the fawn survival rates we observed were preventing population growth. Because white-tailed deer are habitat generalists, home-range-scale habitat characteristics may be unrelated to fawn survival; therefore, future studies should consider landscape-related characteristics on fawn survival.

Understanding the heavy-tailed dynamics in human behavior

NASA Astrophysics Data System (ADS)

Ross, Gordon J.; Jones, Tim

2015-06-01

The recent availability of electronic data sets containing large volumes of communication data has made it possible to study human behavior on a larger scale than ever before. From this, it has been discovered that across a diverse range of data sets, the interevent times between consecutive communication events obey heavy-tailed power law dynamics. Explaining this has proved controversial, and two distinct hypotheses have emerged. The first holds that these power laws are fundamental, and arise from the mechanisms such as priority queuing that humans use to schedule tasks. The second holds that they are statistical artifacts which only occur in aggregated data when features such as circadian rhythms and burstiness are ignored. We use a large social media data set to test these hypotheses, and find that although models that incorporate circadian rhythms and burstiness do explain part of the observed heavy tails, there is residual unexplained heavy-tail behavior which suggests a more fundamental cause. Based on this, we develop a quantitative model of human behavior which improves on existing approaches and gives insight into the mechanisms underlying human interactions.

Comet-toolbox: Numerical simulations of cometary dust tails in your browser

NASA Astrophysics Data System (ADS)

Vincent, J.

2014-07-01

The last few years have seen a rise in the popularity of comets, on both professional and amateur levels. Many cometary events, sometimes visible without a telescope, have triggered worldwide campaigns of ground- and space-based observations: for instance, the explosion of comet 17P/Holmes, the sungrazers C/2006 P1 (McNaught) and C/2012 S1 (ISON), or the forthcoming close encounter of C/2013 A1 (Siding Springs) and Mars. With the overwhelming amount of data available, it becomes more and more important to release the models we use to analyze these events. This ensures not only that more people get the opportunity to investigate the data, but is also beneficial for the science itself as everybody is able to see, use, and improve the models. As a professional planetary scientist, I have written many tools to process the data I use, especially in the field of cometary and asteroid science [1-6]. With the progress of modern computers, it is now possible to translate these tools to simple HTML/Javascript interfaces and run the models in an Internet browser. I have decided to make my tools available in this way, to be used by anybody interested in modeling cometary processes. The first tool being released at ACM 2014 is the Finson-Probstein diagram. The motion of dust particles in a cometary environment is a complex process. A precise description of the grain trajectories requires advanced hydrodynamic models. In the tail, dust and gas are decoupled and the only significant forces affecting the grain trajectories are the solar gravity and radiation pressure. Both forces depend on the square of the heliocentric distance but work in opposite directions. Their sum can be seen as a reduced solar gravity, and the equation of motion is simply m × a = (1-β) × Sun_{gravity}, where β is the ratio P_{radiation}/Sun_{gravity}, and is inversely proportional to the size of the grains for particles larger than 1 micron. From this relation, Finson & Probstein (1968, [7]) proposed a model which describes the full tail geometry with a grid of synchrones and syndynes, i.e., lines representing, respectively, the locations of particles released at the same time or with the same β. This model is simple because it considers only particles released in the orbital plane of the comet, and with zero initial velocity, but it provides a very good approximation of the shape of the tail, and has been used successfully to study many comets. One of the many strengths of this approach is the possibility to date events in the tail. For instance, one can understand if regions of higher density are related to outbursts of the nucleus, or are a result of fragmentation of large chunks of material within the trail. It can also be used to disentangle between continuous activity, short outbursts, or impacts, when all these events produce a feature which at first look like a normal cometary tail. The model can be found at http://www.comet-toolbox.com.

Total sialic acid profile in regressing and remodelling organs during the metamorphosis of marsh frog (Pelophylax ridibundus Pallas 1771).

PubMed

Kaptan, Engin; Bas, Serap Sancar; Inceli, Meliha Sengezer

2013-03-01

This study aimed to investigate the functional relationship of sialic acid in regressing and remodelling organs such as the tail, small intestine and liver during the metamorphosis of Pelophylax ridibundus. For this purpose, four groups were composed according to developmental periods by considering Gosner's criteria (1964). Our findings showed that the sialic acid content of the larval tail has an opposite profile to cell death process. Although the sialic acid content of the small intestine and liver did not change evidently during metamorphosis, it increased after the completion of metamorphosis. Frog tail extensively exhibited cell death process and decreased proliferative activity and underwent complete degeneration during metamorphic climax. In spite of increased apoptotic index, a decreased sialic acid level in the tail tissues during climax can be the indication of a death cell removal process. However, the intestine and the liver included both cell death and proliferative process and remodelling in their adult forms. Thus, their sialic acid profiles during metamorphosis were different from the tail's profile. These data show that sialic acid may be an indicator of the presence of some cellular events during metamorphosis and that it can have different roles in the developmental process depending on the organ's fate throughout metamorphosis. Copyright © 2012 John Wiley & Sons, Ltd.

Ammonia-Oligotrophic and Diazotrophic Heavy Metal-Resistant Serratia liquefaciens Strains from Pioneer Plants and Mine Tailings.

PubMed

Zelaya-Molina, Lily X; Hernández-Soto, Luis M; Guerra-Camacho, Jairo E; Monterrubio-López, Ricardo; Patiño-Siciliano, Alfredo; Villa-Tanaca, Lourdes; Hernández-Rodríguez, César

2016-08-01

Mine tailings are man-made environments characterized by low levels of organic carbon and assimilable nitrogen, as well as moderate concentrations of heavy metals. For the introduction of nitrogen into these environments, a key role is played by ammonia-oligotrophic/diazotrophic heavy metal-resistant guilds. In mine tailings from Zacatecas, Mexico, Serratia liquefaciens was the dominant heterotrophic culturable species isolated in N-free media from bulk mine tailings as well as the rhizosphere, roots, and aerial parts of pioneer plants. S. liquefaciens strains proved to be a meta-population with high intraspecific genetic diversity and a potential to respond to these extreme conditions. The phenotypic and genotypic features of these strains reveal the potential adaptation of S. liquefaciens to oligotrophic and nitrogen-limited mine tailings with high concentrations of heavy metals. These features include ammonia-oligotrophic growth, nitrogen fixation, siderophore and indoleacetic acid production, phosphate solubilization, biofilm formation, moderate tolerance to heavy metals under conditions of diverse nitrogen availability, and the presence of zntA, amtB, and nifH genes. The acetylene reduction assay suggests low nitrogen-fixing activity. The nifH gene was harbored in a plasmid of ∼60 kb and probably was acquired by a horizontal gene transfer event from Klebsiella variicola.

Assessment of the effluent quality from a gold mining industry in Ghana.

PubMed

Acheampong, Mike A; Paksirajan, Kannan; Lens, Piet N L

2013-06-01

The physical and chemical qualities of the process effluent and the tailings dam wastewater of AngloGold-Ashanti Limited, a gold mining company in Ghana, were studied from June to September, 2010. The process effluent from the gold extraction plant contains high amounts of suspended solids and is therefore highly turbid. Arsenic, copper and cyanide were identified as the major pollutants in the process effluent with average concentrations of 10.0, 3.1 and 21.6 mg L(-1), respectively. Arsenic, copper, iron and free cyanide (CN(-)) concentrations in the process effluent exceeded the Ghana EPA discharge limits; therefore, it is necessary to treat the process effluent before it can be discharged into the environment. Principal component analysis of the data indicated that the process effluent characteristics were influenced by the gold extraction process as well as the nature of the gold-bearing ore processed. No significant correlation was observed between the wastewater characteristics themselves, except for the dissolved oxygen and the biochemical oxygen demand. The process effluent is fed to the Sansu tailings dam, which removes 99.9 % of the total suspended solids and 99.7 % of the turbidity; but copper, arsenic and cyanide concentrations were still high. The effluent produced can be classified as inorganic with a high load of non-biodegradable compounds. It was noted that, though the Sansu tailings dam stores the polluted effluent from the gold extraction plant, there will still be serious environmental problems in the event of failure of the dam.

THE NARROW X-RAY TAIL AND DOUBLE Hα TAILS OF ESO 137-002 IN A3627

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, B.; Lin, X. B.; Kong, X.

2013-11-10

We present the analysis of a deep Chandra observation of a ∼2 L{sub *} late-type galaxy, ESO 137-002, in the closest rich cluster A3627. The Chandra data reveal a long (∼>40 kpc) and narrow tail with a nearly constant width (∼3 kpc) to the southeast of the galaxy, and a leading edge ∼1.5 kpc from the galaxy center on the upstream side of the tail. The tail is most likely caused by the nearly edge-on stripping of ESO 137-002's interstellar medium (ISM) by ram pressure, compared to the nearly face-on stripping of ESO 137-001 discussed in our previous work. Spectralmore » analysis of individual regions along the tail shows that the gas throughout it has a rather constant temperature, ∼1 keV, very close to the temperature of the tails of ESO 137-001, if the same atomic database is used. The derived gas abundance is low (∼0.2 solar with the single-kT model), an indication of the multiphase nature of the gas in the tail. The mass of the X-ray tail is only a small fraction (<5%) of the initial ISM mass of the galaxy, suggesting that the stripping is most likely at an early stage. However, with any of the single-kT, double-kT, and multi-kT models we tried, the tail is always 'over-pressured' relative to the surrounding intracluster medium (ICM), which could be due to the uncertainties in the abundance, thermal versus non-thermal X-ray emission, or magnetic support in the ICM. The Hα data from the Southern Observatory for Astrophysical Research show a ∼21 kpc tail spatially coincident with the X-ray tail, as well as a secondary tail (∼12 kpc long) to the east of the main tail diverging at an angle of ∼23° and starting at a distance of ∼7.5 kpc from the nucleus. At the position of the secondary Hα tail, the X-ray emission is also enhanced at the ∼2σ level. We compare the tails of ESO 137-001 and ESO 137-002, and also compare the tails to simulations. Both the similarities and differences of the tails pose challenges to the simulations. Several implications are briefly discussed.« less

Application of a life cycle assessment to compare environmental performance in coal mine tailings management.

PubMed

Adiansyah, Joni Safaat; Haque, Nawshad; Rosano, Michele; Biswas, Wahidul

2017-09-01

This study compares coal mine tailings management strategies using life cycle assessment (LCA) and land-use area metrics methods. Hybrid methods (the Australian indicator set and the ReCiPe method) were used to assess the environmental impacts of tailings management strategies. Several strategies were considered: belt filter press (OPT 1), tailings paste (OPT 2), thickened tailings (OPT 3), and variations of OPT 1 using combinations of technology improvement and renewable energy sources (OPT 1A-D). Electrical energy was found to contribute more than 90% of the environmental impacts. The magnitude of land-use impacts associated with OPT 3 (thickened tailings) were 2.3 and 1.55 times higher than OPT 1 (tailings cake) and OPT 2 (tailings paste) respectively, while OPT 1B (tailings belt filter press with technology improvement and solar energy) and 1D (tailings belt press filter with technology improvement and wind energy) had the lowest ratio of environmental impact to land-use. Further analysis of an economic cost model and reuse opportunities is required to aid decision making on sustainable tailings management and industrial symbiosis. Copyright © 2017 Elsevier Ltd. All rights reserved.

The histone H3 N-terminal tail: a computational analysis of the free energy landscape and kinetics.

PubMed

Zheng, Yuqing; Cui, Qiang

2015-05-28

Histone tails are the short peptide protrusions outside of the nucleosome core particle and they play a critical role in regulating chromatin dynamics and gene activity. A histone H3 N-terminal tail, like other histone tails, can be covalently modified on different residues to activate or repress gene expression. Previous studies have indicated that, despite its intrinsically disordered nature, the histone H3 N-terminal tail has regions of notable secondary structural propensities. To further understand the structure-dynamics-function relationship in this system, we have carried out 75.6 μs long implicit solvent simulations and 29.3 μs long explicit solvent simulations. The extensive samplings allow us to better characterize not only the underlying free energy landscape but also kinetic properties through Markov state models (MSM). Dihedral principal component analysis (dPCA) and locally scaled diffusion map (LSDMap) analysis yield consistent results that indicate an overall flat free energy surface with several shallow basins that correspond to conformations with a high α-helical propensity in two regions of the peptide. Kinetic information extracted from Markov state models reveals rapid transitions between different metastable states with mean first passage times spanning from several hundreds of nanoseconds to hundreds of microseconds. These findings shed light on how the dynamical nature of the histone H3 N-terminal tail is related to its function. The complementary nature of dPCA, LSDMap and MSM for the analysis of biomolecules is also discussed.

An Aspergillus aculateus strain was capable of producing agriculturally useful nanoparticles via bioremediation of iron ore tailings.

PubMed

Bedi, Ankita; Singh, Braj Raj; Deshmukh, Sunil K; Adholeya, Alok; Barrow, Colin J

2018-06-01

Mining waste such as iron ore tailing is environmentally hazardous, encouraging researchers to develop effective bioremediation technologies. Among the microbial isolates collected from iron ore tailings, Aspergillus aculeatus (strain T6) showed good leaching efficiency and produced iron-containing nanoparticles under ambient conditions. This strain can convert iron ore tailing waste into agriculturally useful nanoparticles. Fourier-transform Infrared Spectroscopy (FT-IR analysis) established the at the particles are protein coated, with energy dispersive X-ray Spectroscopy (EDX analysis) showing strong signals for iron. Transmission Electron Microscopy (TEM analysis) showed semi-quasi spherical particles having average size of 15 ± 5 nm. These biosynthesized nanoparticles when tested for their efficacy on seed emergence activity of mungbean (Vigna radiata) seeds, and enhanced plant growth at 10 and 20 ppm. Copyright © 2018 Elsevier Ltd. All rights reserved.

Mathematical aspects of assessing extreme events for the safety of nuclear plants

NASA Astrophysics Data System (ADS)

Potempski, Slawomir; Borysiewicz, Mieczyslaw

2015-04-01

In the paper the review of mathematical methodologies applied for assessing low frequencies of rare natural events like earthquakes, tsunamis, hurricanes or tornadoes, floods (in particular flash floods and surge storms), lightning, solar flares, etc., will be given in the perspective of the safety assessment of nuclear plants. The statistical methods are usually based on the extreme value theory, which deals with the analysis of extreme deviation from the median (or the mean). In this respect application of various mathematical tools can be useful, like: the extreme value theorem of Fisher-Tippett-Gnedenko leading to possible choices of general extreme value distributions, or the Pickands-Balkema-de Haan theorem for tail fitting, or the methods related to large deviation theory. In the paper the most important stochastic distributions relevant for performing rare events statistical analysis will be presented. This concerns, for example, the analysis of the data with the annual extreme values (maxima - "Annual Maxima Series" or minima), or the peak values, exceeding given thresholds at some periods of interest ("Peak Over Threshold"), or the estimation of the size of exceedance. Despite of the fact that there is a lack of sufficient statistical data directly containing rare events, in some cases it is still possible to extract useful information from existing larger data sets. As an example one can consider some data sets available from the web sites for floods, earthquakes or generally natural hazards. Some aspects of such data sets will be also presented taking into account their usefulness for the practical assessment of risk for nuclear power plants coming from extreme weather conditions.

Observation of low energy protons in the geomagnetic tail at lunar distances. M.S. Thesis

NASA Technical Reports Server (NTRS)

Hardy, D. A.

1974-01-01

Three suprathermal ion detectors stationed on the moon were used to detect a region of plasma flowing antisunward along the ordered field lines of the geomagnetic tail, exterior to the plasma sheet. The particle flow displays an integral flux, a bulk velocity, temperatures, and number densities uniquely different from the other particle regimes traversed by the moon. No consistent deviation in the field was found to correspond with the occurrence of the events, which have an angular distribution extending between 50 and 100 deg and a spatial distribution over a wide region in both the Y sub sm and Z sub sm directions. The duration of observable particles varies widely between tail passages, with an apparent correlation between the number of hours of observation and the Kp index averages over these times. It is proposed that these particles may have entered through the cusp region.

Low-buoyancy thermochemical plumes resolve controversy of classical mantle plume concept

NASA Astrophysics Data System (ADS)

Dannberg, Juliane; Sobolev, Stephan V.

2015-04-01

The Earth's biggest magmatic events are believed to originate from massive melting when hot mantle plumes rising from the lowermost mantle reach the base of the lithosphere. Classical models predict large plume heads that cause kilometre-scale surface uplift, and narrow (100 km radius) plume tails that remain in the mantle after the plume head spreads below the lithosphere. However, in many cases, such uplifts and narrow plume tails are not observed. Here using numerical models, we show that the issue can be resolved if major mantle plumes contain up to 15-20% of recycled oceanic crust in a form of dense eclogite, which drastically decreases their buoyancy and makes it depth dependent. We demonstrate that, despite their low buoyancy, large enough thermochemical plumes can rise through the whole mantle causing only negligible surface uplift. Their tails are bulky (>200 km radius) and remain in the upper mantle for 100 millions of years.

Forecasting in Complex Systems

NASA Astrophysics Data System (ADS)

Rundle, J. B.; Holliday, J. R.; Graves, W. R.; Turcotte, D. L.; Donnellan, A.

2014-12-01

Complex nonlinear systems are typically characterized by many degrees of freedom, as well as interactions between the elements. Interesting examples can be found in the areas of earthquakes and finance. In these two systems, fat tails play an important role in the statistical dynamics. For earthquake systems, the Gutenberg-Richter magnitude-frequency is applicable, whereas for daily returns for the securities in the financial markets are known to be characterized by leptokurtotic statistics in which the tails are power law. Very large fluctuations are present in both systems. In earthquake systems, one has the example of great earthquakes such as the M9.1, March 11, 2011 Tohoku event. In financial systems, one has the example of the market crash of October 19, 1987. Both were largely unexpected events that severely impacted the earth and financial systems systemically. Other examples include the M9.3 Andaman earthquake of December 26, 2004, and the Great Recession which began with the fall of Lehman Brothers investment bank on September 12, 2013. Forecasting the occurrence of these damaging events has great societal importance. In recent years, national funding agencies in a variety of countries have emphasized the importance of societal relevance in research, and in particular, the goal of improved forecasting technology. Previous work has shown that both earthquakes and financial crashes can be described by a common Landau-Ginzburg-type free energy model. These metastable systems are characterized by fat tail statistics near the classical spinodal. Correlations in these systems can grow and recede, but do not imply causation, a common source of misunderstanding. In both systems, a common set of techniques can be used to compute the probabilities of future earthquakes or crashes. In this talk, we describe the basic phenomenology of these systems and emphasize their similarities and differences. We also consider the problem of forecast validation and verification. In both of these systems, we show that small event counts (the natural time domain) is an important component of a forecast system.

Active Control of F/A-18 Vertical Tail Buffeting using Piezoelectric Actuators

NASA Technical Reports Server (NTRS)

Sheta, Essam F.; Moses, Robert W.; Huttsell, Lawerence J.; Harrand, Vincent J.

2003-01-01

Vertical tail buffeting is a serious multidisciplinary problem that limits the performance of twin-tail fighter aircraft. The buffet problem occurs at high angles of attack when the vortical flow breaks down ahead of the vertical tails resulting in unsteady and unbalanced pressure loads on the vertical tails. This paper describes a multidisciplinary computational investigation for buffet load alleviation of full F/A-18 aircraft using distributed piezoelectric actuators. The inboard and outboard surfaces of the vertical tail are equipped with piezoelectric actuators to control the buffet responses in the first bending and torsion modes. The electrodynamics of the smart structure are expressed with a three-dimensional finite element model. A single-input-single-output controller is designed to drive the active piezoelectric actuators. High-fidelity multidisciplinary analysis modules for the fluid dynamics, structure dynamics, electrodynamics of the piezoelectric actuators, fluid-structure interfacing, and grid motion are integrated into a multidisciplinary computing environment that controls the temporal synchronization of the analysis modules. Peak values of the power spectral density of tail tip acceleration are reduced by as much as 22% in the first bending mode and by as much as 82% in the first torsion mode. RMS values of tip acceleration are reduced by as much as 12%.

MESSENGER Observations of Mercury's Dynamic Magnetosphere During Three Flybys

NASA Astrophysics Data System (ADS)

Slavin, James; Krimigis, Stamatios; Anderson, Brian J.; Benna, Mehdi; Gold, Robert E.; Ho, George; McNutt, Ralph; Raines, James; Schriver, David; Solomon, Sean C.

MESSENGER's 14 January and 6 October 2008 and 29 September 2009 encounters with Mer-cury have provided new measurements of dynamic variations in the planet's coupled atmo-sphere-magnetosphere system. The three flybys took place under very different interplanetary magnetic field (IMF) conditions. Consistent with predictions of magnetospheric models for northward IMF, the neutral atmosphere was observed to have its strongest sources in the high latitude northern hemisphere for the first flyby. The southward IMF for the second encounter revealed a highly dynamic magnetosphere. Reconnection between the interplanetary and plan-etary magnetic fields is known to control the rate of energy transfer from the solar wind and to drive magnetospheric convection. The MESSENGER magnetic field measurements revealed that the rate at which interplanetary magnetic fields were reconnecting to the planetary fields was a factor of 10 greater than is usually observed at Earth. This extremely high reconnection rate results in a large magnetic field component normal to the magnetopause and the formation of flux transfer events that are much larger relative to the size of the forward magnetosphere than is observed at Earth. The resulting magnetospheric configuration allows the solar wind access to much of the dayside surface of Mercury. During MESSENGER's third Mercury flyby, a variable interplanetary magnetic field produced a series of several-minute-long enhancements of the tail magnetic field by factors of 2 to 3.5. The magnetic field flaring during these intervals indicates that they resulted from loading of the tail with magnetic flux transferred from the dayside magnetosphere. The unloading intervals were associated with plasmoids and traveling compression regions, signatures of tail reconnection. The peak tail magnetic flux during the smallest loading events equaled 30

Fast flows, ULF waves, firehose instability and their association in the Earth's mid-tail current sheet

NASA Astrophysics Data System (ADS)

Wang, C. P.; Xing, X.

2017-12-01

Ultra-Low Frequency (ULF) plasma waves with frequency range between 1 mHz to 10 Hz are widely observed in the Earth's magnetosphere and on the ground. In particular, Pi2 and Pc4 waves have been found to be closely related to many important dynamic processes in the magnetotail, e.g., fast flows (V > 300 km/s). Observations have shown Pi2 waves in association with fast flows in the near-Earth plasma sheet (X>-30 RE). However, in the mid-tail region, where fast flows are more frequently observed than those in the near-Earth magnetotail, this association has not been evaluated. Our preliminary study using ARTEMIS probes in the mid-tail region (X -60 RE) shows close association between Pi2 and Pc4 waves with the presence of fast flows. Strong connection between mid-tail Pi2 pulsations and high-latitude ground Pi2 signatures are also observed. Among many proposed theories for Pi2 wave, ballooning and firehose instabilities are plausible mechanisms in leading to the generation of plasma waves around Pi2 frequency band. Ballooning instability is widely admitted for fast flow associated Pi2 pulsations in the near-Earth region. However, firehose instability is expected to occur more easily in mid-tail and beyond due to the specific pressure anisotropy in that region. We examined the pressure anisotropy conditions and evaluated firehose instability condition for both Pi2 and Pc4 events in mid-tail. It is found that the plasma is unstable against firehose instability in association with the initiation of Pi2 and Pc4 waves. These may suggest that firehose instability can be a wave generation mechanism in the mid-tail region.

Theoretical aerodynamic characteristics of a family of slender wing-tail-body combinations

NASA Technical Reports Server (NTRS)

Lomax, Harvard; Byrd, Paul F

1951-01-01

The aerodynamic characteristics of an airplane configuration composed of a swept-back, nearly constant chord wing and a triangular tail mounted on a cylindrical body are presented. The analysis is based on the assumption that the free-stream Mach number is near unity or that the configuration is slender. The calculations for the tail are made on the assumption that the vortex system trailing back from the wing is either a sheet lying entirely in the plane of the flat tail surface or has completely "rolled up" into two point vortices that lie either in, above, or below the plane of the tail surface.

The scaling of wild events in stochastic models: The Fisher limit, the Mandelbrot limit, and FARIMA as a model of the intermediate cases

NASA Astrophysics Data System (ADS)

Watkins, Nicholas

2013-04-01

Stochastic modelling is of increasing importance, both specifically in climate science and more broadly across the whole of nonlinear geophysics. Traditionally, the noise components of such models would be spectrally white (delta-correlated) and Gaussian in amplitude, and their variance (first named by Fisher in 1918) would well characterise the likely size of fluctuations. Integration, for example in autoregressive models like AR(1), would redden a noise spectrum, while multiplication in turbulent cascades could greatly increase the range of fluctuation amplitudes, but such processes would still inherit aspects of their finite variance building blocks. In the 60s and 70s, however, Mandelbrot and others [see e.g. Watkins, GRL Frontiers, 2013] began to present evidence in nature for much stronger departures from Gaussianity (via very heavy tailed, infinite variance, distributions) and from white noise (through long range dependence (LRD) in time). He also observed intermittency, defined here as correlations between absolute magnitudes in some time series, in, for example, finance and turbulence. He proposed various models, including self-similar ones for heavy tails and LRD, and multifractal cascades for intermittency. In this presentation we compare contrasting types of model by looking at the "wild" events that they produce. The notion of a "wild" event can be made more precise in many ways, including by its duration in time, peak amplitude, and spatial extent. Our chosen measure will be the "burst", defined as the area of a time series above a fixed threshold. We will compare burst scaling in a self-similar, LRD, heavy tailed model (LFSM, e.g. Watkins et al, PRE, 2009] with our newer results for multifractal random walks [with M. Rypdal and O. Lovsletten], and for the heavy tailed extended version of the FARIMA (1,d,0) process, which combines long range dependence with the high frequency structure familiar from AR(1). We will also discuss the physical meaning of FARIMA and its potential as a modelling tool.

Modeling logistic performance in quantitative microbial risk assessment.

PubMed

Rijgersberg, Hajo; Tromp, Seth; Jacxsens, Liesbeth; Uyttendaele, Mieke

2010-01-01

In quantitative microbial risk assessment (QMRA), food safety in the food chain is modeled and simulated. In general, prevalences, concentrations, and numbers of microorganisms in media are investigated in the different steps from farm to fork. The underlying rates and conditions (such as storage times, temperatures, gas conditions, and their distributions) are determined. However, the logistic chain with its queues (storages, shelves) and mechanisms for ordering products is usually not taken into account. As a consequence, storage times-mutually dependent in successive steps in the chain-cannot be described adequately. This may have a great impact on the tails of risk distributions. Because food safety risks are generally very small, it is crucial to model the tails of (underlying) distributions as accurately as possible. Logistic performance can be modeled by describing the underlying planning and scheduling mechanisms in discrete-event modeling. This is common practice in operations research, specifically in supply chain management. In this article, we present the application of discrete-event modeling in the context of a QMRA for Listeria monocytogenes in fresh-cut iceberg lettuce. We show the potential value of discrete-event modeling in QMRA by calculating logistic interventions (modifications in the logistic chain) and determining their significance with respect to food safety.

Heavy-Tailed Fluctuations in the Spiking Output Intensity of Semiconductor Lasers with Optical Feedback

PubMed Central

2016-01-01

Although heavy-tailed fluctuations are ubiquitous in complex systems, a good understanding of the mechanisms that generate them is still lacking. Optical complex systems are ideal candidates for investigating heavy-tailed fluctuations, as they allow recording large datasets under controllable experimental conditions. A dynamical regime that has attracted a lot of attention over the years is the so-called low-frequency fluctuations (LFFs) of semiconductor lasers with optical feedback. In this regime, the laser output intensity is characterized by abrupt and apparently random dropouts. The statistical analysis of the inter-dropout-intervals (IDIs) has provided many useful insights into the underlying dynamics. However, the presence of large temporal fluctuations in the IDI sequence has not yet been investigated. Here, by applying fluctuation analysis we show that the experimental distribution of IDI fluctuations is heavy-tailed, and specifically, is well-modeled by a non-Gaussian stable distribution. We find a good qualitative agreement with simulations of the Lang-Kobayashi model. Moreover, we uncover a transition from a less-heavy-tailed state at low pump current to a more-heavy-tailed state at higher pump current. Our results indicate that fluctuation analysis can be a useful tool for investigating the output signals of complex optical systems; it can be used for detecting underlying regime shifts, for model validation and parameter estimation. PMID:26901346

Hemispheric-scale wind selection facilitates bar-tailed godwit circum-migration of the Pacific

USGS Publications Warehouse

Gill, Robert E.; Douglas, David C.; Handel, Colleen M.; Tibbitts, T. Lee; Hufford, Gary; Piersma, Theunis

2014-01-01

The annual 29 000 km long migration of the bar-tailed godwit, Limosa lapponica baueri, around the Pacific Ocean traverses what is arguably the most complex and seasonally structured atmospheric setting on Earth. Faced with marked variation in wind regimes and storm conditions across oceanic migration corridors, individuals must make critical decisions about when and where to fly during nonstop flights of a week's duration or longer. At a minimum, their decisions will affect wind profitability and thus reduce energetic costs of migration; in the extreme, poor decisions or unpredictable weather events will risk survival. We used satellite telemetry to track the annual migration of 24 bar-tailed godwits and analysed their flight performance relative to wind conditions during three major migration legs between nonbreeding grounds in New Zealand and breeding grounds in Alaska. Because flight altitudes of birds en route were unknown, we modelled flight efficiency at six geopotential heights across each migratory segment. Birds selected departure dates when atmospheric conditions conferred the greatest wind assistance both at departure and throughout their flights. This behaviour suggests that there exists a cognitive mechanism, heretofore unknown among migratory birds, that allows godwits to assess changes in weather conditions that are linked (i.e. teleconnected) across widely separated atmospheric regions. Godwits also showed adaptive flexibility in their response not only to cues related to seasonal changes in macrometeorology, such as spatial shifting of storm tracks and temporal periods of cyclogenesis, but also to cues associated with stochastic events, especially at departure sites. Godwits showed limits to their response behaviours, however, especially relative to rapidly developing stochastic events while en route. We found that flight efficiency depended significantly upon altitude and hypothesize that godwits exhibit further adaptive flexibility by varying flight altitude en route to optimize flight efficiency.

An Active Smart Material Control System for F/A-18 Buffet Alleviation

NASA Technical Reports Server (NTRS)

Sheta, Essam F.; Moses, Robert W.; Huttsell, Lawrence J.; Harrand, Vincent J.

2003-01-01

The vertical tail buffet problem of fighter aircraft occurs at high angles of attack when the vortical flow breaks down ahead of the vertical tails resulting in unsteady and unbalanced pressure loads on the vertical tails. The buffet loads imposed upon the vertical tails resulted in a premature fatigue failure of the tails, and consequently limits the performance and super maneuverability of twin-tail fighter aircraft. An active smart material control system using distributed piezoelectric actuators has been developed for buffet alleviation and is presented. The inboard and outboard surfaces of the vertical tail are equipped with piezoelectric actuators to control the buffet responses in the first bending and torsion modes. The electrodynamics of the piezoelectric actuators are expressed with a three-dimensional finite-element model. A single-input-single-output controller is designed to drive the active piezoelectric actuators. High-fidelity multidisciplinary analysis modules for the fluid dynamics, structure dynamics, electrodynamics of the piezoelectric actuators, control law, fluid structure interfacing, and grid motion are integrated into a multidisciplinary computing environment that controls the temporal synchronization of the analysis modules. At 30 degree angle of attack, RMS values of tip acceleration are reduced by as much as 12%. The peak values of the power spectral density of tail-tip acceleration are reduced by as much as 22% in the first bending mode and by as much as 82% in the first torsion mode. The actively controlled piezoelectric actuators were also effective in adding damping at wide range of angles of attack.

Modeling and statistical analysis of non-Gaussian random fields with heavy-tailed distributions.

PubMed

Nezhadhaghighi, Mohsen Ghasemi; Nakhlband, Abbas

2017-04-01

In this paper, we investigate and develop an alternative approach to the numerical analysis and characterization of random fluctuations with the heavy-tailed probability distribution function (PDF), such as turbulent heat flow and solar flare fluctuations. We identify the heavy-tailed random fluctuations based on the scaling properties of the tail exponent of the PDF, power-law growth of qth order correlation function, and the self-similar properties of the contour lines in two-dimensional random fields. Moreover, this work leads to a substitution for the fractional Edwards-Wilkinson (EW) equation that works in the presence of μ-stable Lévy noise. Our proposed model explains the configuration dynamics of the systems with heavy-tailed correlated random fluctuations. We also present an alternative solution to the fractional EW equation in the presence of μ-stable Lévy noise in the steady state, which is implemented numerically, using the μ-stable fractional Lévy motion. Based on the analysis of the self-similar properties of contour loops, we numerically show that the scaling properties of contour loop ensembles can qualitatively and quantitatively distinguish non-Gaussian random fields from Gaussian random fluctuations.

On the persistence of unstable bump-on-tail electron velocity distributions in the earth's foreshock

NASA Technical Reports Server (NTRS)

Klimas, Alexander J.; Fitzenreiter, Richard J.

1988-01-01

This paper presents further evidence for the persistence of bump-on-tail unstable reduced velocity distributions in the earth's electron foreshock, which contradicts the understanding of quasi-linear saturation of the bump-on-tail instability. A modified theory for the saturation of the bump-on-tail instability in the earth's foreshock is proposed to explain the mechanism of this persistence, and the predictions are compared to the results of a numerical simulation of the electron plasma in the foreshock. The results support the thesis that quasi-linear saturation of the bump-on-tail instability is modified in the foreshock, due to the driven nature of the region, so that at saturation the stabilized velocity distribution still appears bump-on-tail unstable to linear plasma analysis.

AUREOL-3 observations of new boundaries in the auroral ion precipitation

NASA Technical Reports Server (NTRS)

Bosqued, Jean M.; Ashour-Abdalla, Maha; El Alaoui, Mostafa; Zelenyj, Lev M.; Berthlier, Annick

1993-01-01

Interesting and well-separated structures in the 1-20 keV ion precipitation pattern have been revealed by an analysis of more than 50 crossings of the nightside (21-03 MLT) auroral zone by the AUREOL-3 satellite. First, velocity-dispersed ion structures (VDIS) are crossed near the poleward edge of the oval, and are the best ionospheric signature of ion beams flowing along the plasma sheet boundary layer. Proceeding equatorward, a large majority of VDIS events are bounded by a new and interesting narrow band of strongly reduced precipitation, or a gap, which delineates VDIS from the diffuse precipitation region connected to the CPS. A statistical analysis shows that the gap has an extent of about 1-2 deg, which is almost independent of magnetic activity; its location, about 70 deg ILAT, shifts significantly equatorward with higher magnetic activity levels. Intense electron arcs are observed near the equatorward edge of the gap. An important result is that the overall sequence of VDIS-gap-CPS can be explained in terms of orbital dynamics in the tail. The gap in precipitation appears as the counterpart of the 'wall' regime in the equatorial plane, in which a cross-tail current carried by energetic ions is strongly enhanced between 8 and 12 R(E). This region has important consequences for the development of substorms.

Evaluation of 3D Ground Penetrating Radar Efficiency for Abandoned Tailings Pond Internal Structure Analysis and Risk Assessment

NASA Astrophysics Data System (ADS)

Cortada, Unai; Martínez, Julián; Hidalgo, Mª Carmen; Rey, Javier

2017-04-01

Evaluation of 3D Ground Penetrating Radar Efficiency for Abandoned Tailings Pond Internal Structure Analysis and Risk Assessment Abandoned tailings ponds constitute a severe environmental problem in old Pb mining districts due to their high contents in metallic and semi-metallic elements. In most of the cases, there is a lack of information about the construction procedures and the previous environmental situation, which hinders the environmental risk evaluation. In these cases, Ground Penetrating Radar (GPR) could be an interesting technique to analyze the internal structure of the tailings ponds and detect vulnerable zones for leaching processes. Consequently, the GPR could help in the abandoned tailings ponds environmental risk assessment. In this study, a GPR 3D campaign was carried out with a 250 MHz frequency antenna in order to evaluate the efficiency of this technique in both the analysis of internal structures and the environmental risk assessment. Subsequently, 2D and 3D models were undertaken to represent graphically the obtained results. The studied tailings pond is located in the Guadiel river bank, a water course draining the mining district of Linares, Spain. The dam is 150 m length and 80 m width. The GPR 3D was done in a selected area near the central part of the pond. The analyzed grid was 25x50 m and the spacing of the slides was 1 m. The study revealed that the contact between the tailings and the substratum is located at 2.5 m. No intermediate layer was found, which means that the tailings pond was heightened on the fluvial terrace without any insulation system. Inside the first meter of the pond, a cross stratification was identified. The orientation of those laminations changed with the depth, which means that the stockpiling was performed from the different sides of the tailings pond. Furthermore, the direction of these stratifications is slightly concentric to the middle of the dam which could be associated with a central drainage system. Therefore, the internal zone of the tailings pond appears to be the most vulnerable for leaching processes that could contaminate the groundwater. Thus, this technique gave detailed information of the internal structure at the first meters despite the rapid attenuation of the GPR signal. In consequence, the GPR 3D with 250 MHz antenna appears to be effective for the detection of the tailings ponds cross stratification and the tailings-soil contact in dams with less than 5 meters of thickness.

VIRUS ISOLATION AND MOLECULAR DETECTION OF BLUETONGUE AND EPIZOOTIC HEMORRHAGIC DISEASE VIRUSES FROM NATURALLY INFECTED WHITE-TAILED DEER (ODOCOILEUS VIRGINIANUS).

PubMed

Kienzle, Clara; Poulson, Rebecca L; Ruder, Mark G; Stallknecht, David E

2017-10-01

Hemorrhagic disease in North America is caused by multiple serotypes of epizootic hemorrhagic disease virus (EHDV) and bluetongue virus (BTV). Diagnostic tests for detection of EHDV and BTV include virus isolation (VI), reverse transcriptase (RT)-PCR, and real-time RT-PCR (rRT-PCR). Our objective was to compare the diagnostic capabilities of three rRT-PCR protocols for detection of EHDV and BTV from naturally infected white-tailed deer (Odocoileus virginianus). We compared the effectiveness of these assays to traditional viral detection methods (e.g., VI) for historic and current clinical cases. Because of the variable nature of tissue collection and storage before diagnostic testing, an evaluation of viral persistence on multiple freeze-thaw events was also conducted. Two of the rRT-PCR assays provided for reliable detection of EHDV and BTV from 100% of clinically affected and VI-confirmed infected animals. Additionally, no significant change in viral titer was observed on multiple freeze-thaw events.

A Phosphosite within the SH2 Domain of Lck Regulates Its Activation by CD45.

PubMed

Courtney, Adam H; Amacher, Jeanine F; Kadlecek, Theresa A; Mollenauer, Marianne N; Au-Yeung, Byron B; Kuriyan, John; Weiss, Arthur

2017-08-03

The Src Family kinase Lck sets a critical threshold for T cell activation because it phosphorylates the TCR complex and the Zap70 kinase. How a T cell controls the abundance of active Lck molecules remains poorly understood. We have identified an unappreciated role for a phosphosite, Y192, within the Lck SH2 domain that profoundly affects the amount of active Lck in cells. Notably, mutation of Y192 blocks critical TCR-proximal signaling events and impairs thymocyte development in retrogenic mice. We determined that these defects are caused by hyperphosphorylation of the inhibitory C-terminal tail of Lck. Our findings reveal that modification of Y192 inhibits the ability of CD45 to associate with Lck in cells and dephosphorylate the C-terminal tail of Lck, which prevents its adoption of an active open conformation. These results suggest a negative feedback loop that responds to signaling events that tune active Lck amounts and TCR sensitivity. Copyright © 2017 Elsevier Inc. All rights reserved.

Tailings dam-break flow - Analysis of sediment transport

NASA Astrophysics Data System (ADS)

Aleixo, Rui; Altinakar, Mustafa

2015-04-01

A common solution to store mining debris is to build tailings dams near the mining site. These dams are usually built with local materials such as mining debris and are more vulnerable than concrete dams (Rico et al. 2008). of The tailings and the pond water generally contain heavy metals and various toxic chemicals used in ore extraction. Thus, the release of tailings due to a dam-break can have severe ecological consequences in the environment. A tailings dam-break has many similarities with a common dam-break flow. It is highly transient and can be severely descructive. However, a significant difference is that the released sediment-water mixture will behave as a non-Newtonian flow. Existing numerical models used to simulate dam-break flows do not represent correctly the non-Newtonian behavior of tailings under a dam-break flow and may lead to unrealistic and incorrect results. The need for experiments to extract both qualitative and quantitative information regarding these flows is therefore real and actual. The present paper explores an existing experimental data base presented in Aleixo et al. (2014a,b) to further characterize the sediment transport under conditions of a severe transient flow and to extract quantitative information regarding sediment flow rate, sediment velocity, sediment-sediment interactions a among others. Different features of the flow are also described and analyzed in detail. The analysis is made by means of imaging techniques such as Particle Image Velocimetry and Particle Tracking Velocimetry that allow extracting not only the velocity field but the Lagrangian description of the sediments as well. An analysis of the results is presented and the limitations of the presented experimental approach are discussed. References Rico, M., Benito, G., Salgueiro, AR, Diez-Herrero, A. and Pereira, H.G. (2008) Reported tailings dam failures: A review of the European incidents in the worldwide context , Journal of Hazardous Materials, 152, 846-852 . Aleixo, R., Ozeren, Y., Altinakar, M. and Wren, D. (2014a) Velocity Measurements using Particle Tracking in Tailings dam Failure experiments, Proceedings of the 3rd IAHR-Europe conference, Porto, Portugal. Aleixo, R., Ozeren, Y., Altinakar, M. (2014b) Tailing dam-break analysis by means of a combined PIV-PTV tool, Proceedings of the River Flow Conference, Lausanne, Switzerland.

Model for interevent times with long tails and multifractality in human communications: An application to financial trading

NASA Astrophysics Data System (ADS)

Perelló, Josep; Masoliver, Jaume; Kasprzak, Andrzej; Kutner, Ryszard

2008-09-01

Social, technological, and economic time series are divided by events which are usually assumed to be random, albeit with some hierarchical structure. It is well known that the interevent statistics observed in these contexts differs from the Poissonian profile by being long-tailed distributed with resting and active periods interwoven. Understanding mechanisms generating consistent statistics has therefore become a central issue. The approach we present is taken from the continuous-time random-walk formalism and represents an analytical alternative to models of nontrivial priority that have been recently proposed. Our analysis also goes one step further by looking at the multifractal structure of the interevent times of human decisions. We here analyze the intertransaction time intervals of several financial markets. We observe that empirical data describe a subtle multifractal behavior. Our model explains this structure by taking the pausing-time density in the form of a superstatistics where the integral kernel quantifies the heterogeneous nature of the executed tasks. A stretched exponential kernel provides a multifractal profile valid for a certain limited range. A suggested heuristic analytical profile is capable of covering a broader region.

Prehensile and non-prehensile tails among syngnathid fishes: what's the difference?

PubMed

Neutens, Céline; de Dobbelaer, Bart; Claes, Peter; Adriaens, Dominique

2017-02-01

All syngnathid fishes are characterized by a tail with a vertebral column that is surrounded by dermal Plates - four per vertebra. Seahorses and pipehorses have prehensile tails, a unique characteristic among teleosts that allows them to grasp and hold onto substrates. Pipefishes, in contrast, possess a more rigid tail. Previous research (Neutens et al., 2014) showed a wide range of variation within the skeletal morphology of different members in the syngnathid family. The goal of this study is to explore whether the diversity in the three-dimensional (3D) shape of different tail types reflects grasping performance, and to what degree grasping tails occupy a different and more constrained diversity. For this, a 3D morphometrical analysis based on surfaces was performed. Four different analyses were performed on the tail skeleton of nine species exhibiting different levels of tail grasping capacities (four pipehorse, three seahorse, one pipefish and one seadragon species) to examine the intra-individual variation across the anteroposterior and dorso-ventral axis. In the two interspecific analyses, all vertebrae and all dermal plates were mutually compared. Overall, intra-individual variation was larger in species with a prehensile tail. The analysis on the vertebrae showed differences in the length and orientation of the hemal spine as well as the inclination angle between the anterior and posterior surface of the vertebral body. This was observed at an intra-individual level across the anteroposterior axis in prehensile species and at an inter-individual level between prehensile and non-prehensile species. Across the anteroposterior axis in prehensile tails, the overall shape of the plates changes from rectangular at the anterior end to square at the posterior end. Across the dorso-ventral axis, the ventral dermal plates carry a significantly longer caudal spine than the dorsal ones in all prehensile-tailed species. It can therefore be concluded that prehensile tails exhibit a larger anteroposterior and dorso-ventral shape variation than non-prehensile ones. However, the hypothesis that there is a more constrained shape variation among prehensile species compared to non-prehensile ones had to be rejected. Copyright © 2016 Elsevier GmbH. All rights reserved.

MESSENGER Observations of Mercury's Magnetosphere

NASA Technical Reports Server (NTRS)

Slavin, James A.

2010-01-01

During MESSENGER's second and third flybys of Mercury on October 6, 2008 and September 29, 2009, respectively, southward interplanetary magnetic field (IMF) produced intense reconnection signatures in the dayside and nightside magnetosphere and markedly different system-level responses. The IMF during the second flyby was continuously southward and the magnetosphere appeared very active, with large magnetic field components normal to the magnetopause and the generation of flux transfer events at the magnetopause and plasmoids in the tail current sheet every 30 to 90 s. However, the strength and direction of the tail magnetic field was stable. In contrast, the IMF during the third flyby varied from north to south on timescales of minutes. Although the MESSENGER measurements were limited during that encounter to the nightside magnetosphere, numerous examples of plasmoid release in the tail were detected, but they were not periodic. Instead, plasmoid release was highly correlated with four large enhancements of the tail magnetic field (i.e. by factors > 2) with durations of approx. 2 - 3 min. The increased flaring of the magnetic field during these intervals indicates that the enhancements were caused by loading of the tail with magnetic flux transferred from the dayside magnetosphere. New analyses of the second and third flyby observations of reconnection and its system-level effects provide a basis for comparison and contrast with what is known about the response of the Earth s magnetosphere to variable versus steady southward IMF.

Heliospheric Observations of Energetic Particles

NASA Technical Reports Server (NTRS)

Summerlin, Errol J.

2011-01-01

Heliospheric observations of energetic particles have shown that, on long time averages, a consistent v^-5 power-law index arises even in the absence of transient events. This implies an ubiquitous acceleration process present in the solar wind that is required to generate these power-law tails and maintain them against adiabatic losses and coulomb-collisions which will cool and thermalize the plasma respectively. Though the details of this acceleration process are being debated within the community, most agree that the energy required for these tails comes from fluctuations in the magnetic field which are damped as the energy is transferred to particles. Given this source for the tail, is it then reasonable to assume that the turbulent LISM should give rise to such a power-law tail as well? IBEX observations clearly show a power-law tail of index approximately -5 in energetic neutral atoms. The simplest explanation for the origins of these ENAs are that they are energetic ions which have charge-exchanged with a neutral atom. However, this would imply that energetic ions possess a v^-5 power-law distribution at keV energies at the source of these ENAs. If the source is presumed to be the LISM, it provides additional options for explaining the, so called, IBEX ribbon. This presentation will discuss some of these options as well as potential mechanisms for the generation of a power-law spectrum in the LISM.

BATSE Observations of Gamma-Ray Burst Tails

NASA Technical Reports Server (NTRS)

Connaughton, Valerie

2002-01-01

With the observation of low-energy radiation coming from the site of gamma-ray bursts in the hours to weeks after the initial gamma ray burst, it appears that astronomers have discovered a cosmological imprint made by the burster on its surroundings. This paper discusses the phenomenon of postburst emission in Burst and Transient Source Experiment (BATSE) gamma-ray bursts at energies usually associated with prompt emission. After summing up the background-subtracted signals from hundreds of bursts, it is found that tails out to hundreds of seconds after the trigger could be a common feature of events of a duration greater than 2 seconds, and perhaps of the shorter bursts at a lower and shorter-lived level. The tail component may be softer and seems independent of the duration (within the long-GRB sample) and brightness of the prompt burst emission. Some individual bursts have visible tails at gamma-ray energies, and the spectrum in a few cases differs from that of the prompt emission. For one of these bursts, GRB 991216, afterglow at lower energies was detected, which raised the possibility of seeing afterglow observations over large energy ranges using the next generation of GRB detectors in addition to sensitive space- or ground-based telescopes.

Pre-Historic and Recent Vicariance Events Shape Genetic Structure and Diversity in Endangered Lion-Tailed Macaque in the Western Ghats: Implications for Conservation

PubMed Central

Ram, Muthuvarmadam S.; Marne, Minal; Gaur, Ajay; Kumara, Honnavalli N.; Singh, Mewa; Kumar, Ajith; Umapathy, Govindhaswamy

2015-01-01

Genetic isolation of populations is a potent force that helps shape the course of evolution. However, small populations in isolation, especially in fragmented landscapes, are known to lose genetic variability, suffer from inbreeding depression and become genetically differentiated among themselves. In this study, we assessed the genetic diversity of lion-tailed macaques (Macaca silenus) inhabiting the fragmented landscape of Anamalai hills and examined the genetic structure of the species across its distributional range in the Western Ghats. We sequenced around 900 bases of DNA covering two mitochondrial regions–hypervariable region-I and partial mitochondrial cytochrome b–from individuals sampled both from wild and captivity, constructed and dated phylogenetic trees. We found that the lion-tailed macaque troops in the isolated forest patches in Anamalai hills have depleted mitochondrial DNA diversity compared to troops in larger and continuous forests. Our results also revealed an ancient divergence in the lion-tailed macaque into two distinct populations across the Palghat gap, dating to 2.11 million years ago. In light of our findings, we make a few suggestions on the management of wild and captive populations. PMID:26561307

Definition of smad3 phosphorylation events that affect malignant and metastatic behaviors in breast cancer cells.

PubMed

Bae, Eunjin; Sato, Misako; Kim, Ran-Ju; Kwak, Mi-Kyung; Naka, Kazuhito; Gim, Jungsoo; Kadota, Mitsutaka; Tang, Binwu; Flanders, Kathleen C; Kim, Tae-Aug; Leem, Sun-Hee; Park, Taesung; Liu, Fang; Wakefield, Lalage M; Kim, Seong-Jin; Ooshima, Akira

2014-11-01

Smad3, a major intracellular mediator of TGFβ signaling, functions as both a positive and negative regulator in carcinogenesis. In response to TGFβ, the TGFβ receptor phosphorylates serine residues at the Smad3 C-tail. Cancer cells often contain high levels of the MAPK and CDK activities, which can lead to the Smad3 linker region becoming highly phosphorylated. Here, we report, for the first time, that mutation of the Smad3 linker phosphorylation sites markedly inhibited primary tumor growth, but significantly increased lung metastasis of breast cancer cell lines. In contrast, mutation of the Smad3 C-tail phosphorylation sites had the opposite effect. We show that mutation of the Smad3 linker phosphorylation sites greatly intensifies all TGFβ-induced responses, including growth arrest, apoptosis, reduction in the size of putative cancer stem cell population, epithelial-mesenchymal transition, and invasive activity. Moreover, all TGFβ responses were completely lost on mutation of the Smad3 C-tail phosphorylation sites. Our results demonstrate a critical role of the counterbalance between the Smad3 C-tail and linker phosphorylation in tumorigenesis and metastasis. Our findings have important implications for therapeutic intervention of breast cancer. ©2014 American Association for Cancer Research.

Stochastic Generation of Spatiotemporal Rainfall Events for Flood Risk Assessment

NASA Astrophysics Data System (ADS)

Diederen, D.; Liu, Y.; Gouldby, B.; Diermanse, F.

2017-12-01

Current flood risk analyses that only consider peaks of hydrometeorological forcing variables have limitations regarding their representation of reality. Simplistic assumptions regarding antecedent conditions are required, often different sources of flooding are considered in isolation, and the complex temporal and spatial evolution of the events is not considered. Mid-latitude storms, governed by large scale climatic conditions, often exhibit a high degree of temporal dependency, for example. For sustainable flood risk management, that accounts appropriately for climate change, it is desirable for flood risk analyses to reflect reality more appropriately. Analysis of risk mitigation measures and comparison of their relative performance is therefore likely to be more robust and lead to improved solutions. We provide a new framework for the provision of boundary conditions to flood risk analyses that more appropriately reflects reality. The boundary conditions capture the temporal dependencies of complex storms whilst preserving the extreme values and associated spatial dependencies. We demonstrate the application of this framework to generate a synthetic rainfall events time series boundary condition set from reanalysis rainfall data (CFSR) on the continental scale. We define spatiotemporal clusters of rainfall as events, extract hydrological parameters for each event, generate synthetic parameter sets with a multivariate distribution with a focus on the joint tail probability [Heffernan and Tawn, 2004], and finally create synthetic events from the generated synthetic parameters. We highlight the stochastic integration of (a) spatiotemporal features, e.g. event occurrence intensity over space-time, or time to previous event, which we use for the spatial placement and sequencing of the synthetic events, and (b) value-specific parameters, e.g. peak intensity and event extent. We contrast this to more traditional approaches to highlight the significant improvements in terms of representing the reality of extreme flood events.

Robust Bayesian hypocentre and uncertainty region estimation: the effect of heavy-tailed distributions and prior information in cases with poor, inconsistent and insufficient arrival times

NASA Astrophysics Data System (ADS)

Martinsson, J.

2013-03-01

We propose methods for robust Bayesian inference of the hypocentre in presence of poor, inconsistent and insufficient phase arrival times. The objectives are to increase the robustness, the accuracy and the precision by introducing heavy-tailed distributions and an informative prior distribution of the seismicity. The effects of the proposed distributions are studied under real measurement conditions in two underground mine networks and validated using 53 blasts with known hypocentres. To increase the robustness against poor, inconsistent or insufficient arrivals, a Gaussian Mixture Model is used as a hypocentre prior distribution to describe the seismically active areas, where the parameters are estimated based on previously located events in the region. The prior is truncated to constrain the solution to valid geometries, for example below the ground surface, excluding known cavities, voids and fractured zones. To reduce the sensitivity to outliers, different heavy-tailed distributions are evaluated to model the likelihood distribution of the arrivals given the hypocentre and the origin time. Among these distributions, the multivariate t-distribution is shown to produce the overall best performance, where the tail-mass adapts to the observed data. Hypocentre and uncertainty region estimates are based on simulations from the posterior distribution using Markov Chain Monte Carlo techniques. Velocity graphs (equivalent to traveltime graphs) are estimated using blasts from known locations, and applied to reduce the main uncertainties and thereby the final estimation error. To focus on the behaviour and the performance of the proposed distributions, a basic single-event Bayesian procedure is considered in this study for clarity. Estimation results are shown with different distributions, with and without prior distribution of seismicity, with wrong prior distribution, with and without error compensation, with and without error description, with insufficient arrival times and in presence of significant outliers. A particular focus is on visual results and comparisons to give a better understanding of the Bayesian advantage and to show the effects of heavy-tailed distributions and informative prior information on real data.

A Three Dimension Model to Demonstrate Head and Tail Fold Formation in Mammalian Embryos

ERIC Educational Resources Information Center

Bressler, Robert S.

1977-01-01

Many students have difficulty visualizing the delineation of the embryonic body from the flat germ disc. An easily-constructed model is described that has been used successfully to convey the dynamics of embryological events at Mount Sinai School of Medicine. (LBH)

Ecological restoration alters microbial communities in mine tailings profiles

NASA Astrophysics Data System (ADS)

Li, Yang; Jia, Zhongjun; Sun, Qingye; Zhan, Jing; Yang, Yang; Wang, Dan

2016-04-01

Ecological restoration of mine tailings have impact on soil physiochemical properties and microbial communities. The surface soil has been a primary concern in the past decades, however it remains poorly understood about the adaptive response of microbial communities along the profile during ecological restoration of the tailings. In this study, microbial communities along a 60-cm profile were investigated in a mine tailing pond during ecological restoration of the bare waste tailings (BW) with two vegetated soils of Imperata cylindrica (IC) and Chrysopogon zizanioides (CZ) plants. Revegetation of both IC and CZ could retard soil degradation of mine tailing by stimulation of soil pH at 0-30 cm soils and altered the bacterial communities at 0-20 cm depths of the mine tailings. Significant differences existed in the relative abundance of the phyla Alphaproteobacteria, Deltaproteobacteria, Acidobacteria, Firmicutes and Nitrospira. Slight difference of bacterial communities were found at 30-60 cm depths of mine tailings. Abundance and activity analysis of nifH genes also explained the elevated soil nitrogen contents at the surface 0-20 cm of the vegetated soils. These results suggest that microbial succession occurred primarily at surface tailings and vegetation of pioneering plants might have promoted ecological restoration of mine tailings.

Ecological restoration alters microbial communities in mine tailings profiles.

PubMed

Li, Yang; Jia, Zhongjun; Sun, Qingye; Zhan, Jing; Yang, Yang; Wang, Dan

2016-04-29

Ecological restoration of mine tailings have impact on soil physiochemical properties and microbial communities. The surface soil has been a primary concern in the past decades, however it remains poorly understood about the adaptive response of microbial communities along the profile during ecological restoration of the tailings. In this study, microbial communities along a 60-cm profile were investigated in a mine tailing pond during ecological restoration of the bare waste tailings (BW) with two vegetated soils of Imperata cylindrica (IC) and Chrysopogon zizanioides (CZ) plants. Revegetation of both IC and CZ could retard soil degradation of mine tailing by stimulation of soil pH at 0-30 cm soils and altered the bacterial communities at 0-20 cm depths of the mine tailings. Significant differences existed in the relative abundance of the phyla Alphaproteobacteria, Deltaproteobacteria, Acidobacteria, Firmicutes and Nitrospira. Slight difference of bacterial communities were found at 30-60 cm depths of mine tailings. Abundance and activity analysis of nifH genes also explained the elevated soil nitrogen contents at the surface 0-20 cm of the vegetated soils. These results suggest that microbial succession occurred primarily at surface tailings and vegetation of pioneering plants might have promoted ecological restoration of mine tailings.

Ecological restoration alters microbial communities in mine tailings profiles

PubMed Central

Li, Yang; Jia, Zhongjun; Sun, Qingye; Zhan, Jing; Yang, Yang; Wang, Dan

2016-01-01

Ecological restoration of mine tailings have impact on soil physiochemical properties and microbial communities. The surface soil has been a primary concern in the past decades, however it remains poorly understood about the adaptive response of microbial communities along the profile during ecological restoration of the tailings. In this study, microbial communities along a 60-cm profile were investigated in a mine tailing pond during ecological restoration of the bare waste tailings (BW) with two vegetated soils of Imperata cylindrica (IC) and Chrysopogon zizanioides (CZ) plants. Revegetation of both IC and CZ could retard soil degradation of mine tailing by stimulation of soil pH at 0–30 cm soils and altered the bacterial communities at 0–20 cm depths of the mine tailings. Significant differences existed in the relative abundance of the phyla Alphaproteobacteria, Deltaproteobacteria, Acidobacteria, Firmicutes and Nitrospira. Slight difference of bacterial communities were found at 30–60 cm depths of mine tailings. Abundance and activity analysis of nifH genes also explained the elevated soil nitrogen contents at the surface 0–20 cm of the vegetated soils. These results suggest that microbial succession occurred primarily at surface tailings and vegetation of pioneering plants might have promoted ecological restoration of mine tailings. PMID:27126064

Extreme events in total ozone over Arosa: Application of extreme value theory and fingerprints of atmospheric dynamics and chemistry and their effects on mean values and long-term changes

NASA Astrophysics Data System (ADS)

Rieder, Harald E.; Staehelin, Johannes; Maeder, Jörg A.; Peter, Thomas; Ribatet, Mathieu; Davison, Anthony C.; Stübi, Rene; Weihs, Philipp; Holawe, Franz

2010-05-01

In this study tools from extreme value theory (e.g. Coles, 2001; Ribatet, 2007) are applied for the first time in the field of stratospheric ozone research, as statistical analysis showed that previously used concepts assuming a Gaussian distribution (e.g. fixed deviations from mean values) of total ozone data do not address the internal data structure concerning extremes adequately. The study illustrates that tools based on extreme value theory are appropriate to identify ozone extremes and to describe the tails of the world's longest total ozone record (Arosa, Switzerland - for details see Staehelin et al., 1998a,b) (Rieder et al., 2010a). A daily moving threshold was implemented for consideration of the seasonal cycle in total ozone. The frequency of days with extreme low (termed ELOs) and extreme high (termed EHOs) total ozone and the influence of those on mean values and trends is analyzed for Arosa total ozone time series. The results show (a) an increase in ELOs and (b) a decrease in EHOs during the last decades and (c) that the overall trend during the 1970s and 1980s in total ozone is strongly dominated by changes in these extreme events. After removing the extremes, the time series shows a strongly reduced trend (reduction by a factor of 2.5 for trend in annual mean). Furthermore, it is shown that the fitted model represents the tails of the total ozone data set with very high accuracy over the entire range (including absolute monthly minima and maxima). Also the frequency distribution of ozone mini-holes (using constant thresholds) can be calculated with high accuracy. Analyzing the tails instead of a small fraction of days below constant thresholds provides deeper insight in time series properties. Excursions in the frequency of extreme events reveal "fingerprints" of dynamical factors such as ENSO or NAO, and chemical factors, such as cold Arctic vortex ozone losses, as well as major volcanic eruptions of the 20th century (e.g. Gunung Agung, El Chichón, Mt. Pinatubo). Furthermore, atmospheric loading in ozone depleting substances lead to a continuous modification of column ozone in the northern hemisphere also with respect to extreme values (partly again in connection with polar vortex contributions). It is shown that application of extreme value theory allows the identification of many more such fingerprints than conventional time series analysis of annual and seasonal mean values. Especially, the analysis shows the strong influence of dynamics, revealing that even moderate ENSO and NAO events have a discernible effect on total ozone (Rieder et al., 2010b). Overall the presented new extremes concept provides new information on time series properties, variability, trends and the influence of dynamics and chemistry, complementing earlier analyses focusing only on monthly (or annual) mean values. References: Coles, S.: An Introduction to Statistical Modeling of Extreme Values, Springer Series in Statistics, ISBN:1852334592, Springer, Berlin, 2001. Ribatet, M.: POT: Modelling peaks over a threshold, R News, 7, 34-36, 2007. Rieder ,H.E., Staehelin, J., Maeder, J.A., Ribatet, M., Stübi, R., Weihs, P., Holawe, F., Peter, T., and A.D., Davison (2010): Extreme events in total ozone over Arosa - Part I: Application of extreme value theory, to be submitted to ACPD. Rieder, H.E., Staehelin, J., Maeder, J.A., Ribatet, M., Stübi, R., Weihs, P., Holawe, F., Peter, T., and A.D., Davison (2010): Extreme events in total ozone over Arosa - Part II: Fingerprints of atmospheric dynamics and chemistry and effects on mean values and long-term changes, to be submitted to ACPD. Staehelin, J., Renaud, A., Bader, J., McPeters, R., Viatte, P., Hoegger, B., Bugnion, V., Giroud, M., and Schill, H.: Total ozone series at Arosa (Switzerland): Homogenization and data comparison, J. Geophys. Res., 103(D5), 5827-5842, doi:10.1029/97JD02402, 1998a. Staehelin, J., Kegel, R., and Harris, N. R.: Trend analysis of the homogenized total ozone series of Arosa (Switzerland), 1929-1996, J. Geophys. Res., 103(D7), 8389-8400, doi:10.1029/97JD03650, 1998b.

Data Validation Package October 2015 Groundwater and Surface Water Sampling at the Monticello, Utah, Processing Site January 2016

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nguyen, Jason; Smith, Fred

Sampling Period: October 12–14, 2015. This semiannual event includes sampling groundwater and surface water at the Monticello Mill Tailings Site. Sampling and analyses were conducted as specified in the 2004 Monticello Mill Tailings Site Operable Unit III Post-Record of Decision Monitoring Plan, Draft Final and Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PRO/S04351, continually updated). Samples were collected from 52 of 61 planned locations (15 of 17 former mill site wells, 17 of 18 downgradient wells, 9 of 9 downgradient permeable reactive barrier wells, 2 of 7 seeps and wetlands, and 9 ofmore » 10 surface water locations). Locations MW00-07, Seep 1, Seep 2, Seep 3, Seep 5, Seep 6, SW00-01, T01-13, and T01-19 were not sampled because of insufficient water availability. All samples were filtered as specified in the monitoring plan. Duplicate samples were collected from surface water location W3-04 and from monitoring wells 82-08, 92-09, and 92-10. Water levels were measured at all but one sampled well and an additional set of wells. The contaminants of concern (COCs) for the Monticello Mill Tailings Site are arsenic, manganese, molybdenum, nitrate + nitrite as nitrogen (nitrate + nitrite as N), selenium, uranium, and vanadium. Time-concentration graphs of the COCs for all groundwater and surface water locations are included in this report. Locations with COCs that exceeded remediation goals are listed.« less

A cis-prenyltransferase from Methanosarcina acetivorans catalyzes both head-to-tail and nonhead-to-tail prenyl condensation.

PubMed

Ogawa, Takuya; Emi, Koh-Ichi; Koga, Kazushi; Yoshimura, Tohru; Hemmi, Hisashi

2016-06-01

Cis-prenyltransferase usually consecutively catalyzes the head-to-tail condensation reactions of isopentenyl diphosphate to allylic prenyl diphosphate in the production of (E,Z-mixed) polyprenyl diphosphate, which is the precursor of glycosyl carrier lipids. Some recently discovered homologs of the enzyme, however, catalyze the nonhead-to-tail condensation reactions between allylic prenyl diphosphates. In this study, we characterize a cis-prenyltransferase homolog from a methanogenic archaeon, Methanosarcina acetivorans, to obtain information on the biosynthesis of the glycosyl carrier lipids within it. This enzyme catalyzes both head-to-tail and nonhead-to-tail condensation reactions. The kinetic analysis shows that the main reaction of the enzyme is consecutive head-to-tail prenyl condensation reactions yielding polyprenyl diphosphates, while the chain lengths of the major products seem shorter than expected for the precursor of glycosyl carrier lipids. On the other hand, a subsidiary reaction of the enzyme, i.e., nonhead-to-tail condensation between dimethylallyl diphosphate and farnesyl diphosphate, gives a novel diterpenoid compound, geranyllavandulyl diphosphate. © 2016 Federation of European Biochemical Societies.

MaxEnt, second variation, and generalized statistics

NASA Astrophysics Data System (ADS)

Plastino, A.; Rocca, M. C.

2015-10-01

There are two kinds of Tsallis-probability distributions: heavy tail ones and compact support distributions. We show here, by appeal to functional analysis' tools, that for lower bound Hamiltonians, the second variation's analysis of the entropic functional guarantees that the heavy tail q-distribution constitutes a maximum of Tsallis' entropy. On the other hand, in the compact support instance, a case by case analysis is necessary in order to tackle the issue.

Saturn's dynamic magnetotail: A comprehensive magnetic field and plasma survey of plasmoids and traveling compression regions and their role in global magnetospheric dynamics

NASA Astrophysics Data System (ADS)

Jackman, C. M.; Slavin, J. A.; Kivelson, M. G.; Southwood, D. J.; Achilleos, N.; Thomsen, M. F.; DiBraccio, G. A.; Eastwood, J. P.; Freeman, M. P.; Dougherty, M. K.; Vogt, M. F.

2014-07-01

We present a comprehensive study of the magnetic field and plasma signatures of reconnection events observed with the Cassini spacecraft during the tail orbits of 2006. We examine their "local" properties in terms of magnetic field reconfiguration and changing plasma flows. We also describe the "global" impact of reconnection in terms of the contribution to mass loss, flux closure, and large-scale tail structure. The signatures of 69 plasmoids, 17 traveling compression regions (TCRs), and 13 planetward moving structures have been found. The direction of motion is inferred from the sign of the change in the Bθ component of the magnetic field in the first instance and confirmed through plasma flow data where available. The plasmoids are interpreted as detached structures, observed by the spacecraft tailward of the reconnection site, and the TCRs are interpreted as the effects of the draping and compression of lobe magnetic field lines around passing plasmoids. We focus on the analysis and interpretation of the tailward moving (south-to-north field change) plasmoids and TCRs in this work, considering the planetward moving signatures only from the point of view of understanding the reconnection x-line position and recurrence rates. We discuss the location spread of the observations, showing that where spacecraft coverage is symmetric about midnight, reconnection signatures are observed more frequently on the dawn flank than on the dusk flank. We show an example of a chain of two plasmoids and two TCRs over 3 hours and suggest that such a scenario is associated with a single-reconnection event, ejecting multiple successive plasmoids. Plasma data reveal that one of these plasmoids contains H+ at lower energy and W+ at higher energy, consistent with an inner magnetospheric source, and the total flow speed inside the plasmoid is estimated with an upper limit of 170 km/s. We probe the interior structure of plasmoids and find that the vast majority of examples at Saturn show a localized decrease in field magnitude as the spacecraft passes through the structure. We take the trajectory of Cassini into account, as, during 2006, the spacecraft's largely equatorial position beneath the hinged current sheet meant that it rarely traversed the center of plasmoids. We present an innovative method of optimizing the window size for minimum variance analysis (MVA) and apply this MVA across several plasmoids to explore their interior morphology in more detail, finding that Saturn's tail contains both loop-like and flux rope-like plasmoids. We estimate the mass lost downtail through reconnection and suggest that the apparent imbalance between mass input and observed plasmoid ejection may mean that alternative mass loss methods contribute to balancing Saturn's mass budget. We also estimate the rate of magnetic flux closure in the tail and find that when open field line closure is active, it plays a very significant role in flux cycling at Saturn.

Dynamic Harris current sheet thickness from Cluster current density and plasma measurements

NASA Technical Reports Server (NTRS)

Thompson, S. M.; Kivelson, M. G.; Khurana, K. K.; McPherron, R. L.; Weygand, J. M.; Balogh, A.; Reme, H.; Kistler, L. M.

2005-01-01

We use the first accurate measurements of current densities in the plasma sheet to calculate the half-thickness and position of the current sheet as a function of time. Our technique assumes a Harris current sheet model, which is parameterized by lobe magnetic field B(o), current sheet half-thickness h, and current sheet position z(sub o). Cluster measurements of magnetic field, current density, and plasma pressure are used to infer the three parameters as a function of time. We find that most long timescale (6-12 hours) current sheet crossings observed by Cluster cannot be described by a static Harris current sheet with a single set of parameters B(sub o), h, and z(sub o). Noting the presence of high-frequency fluctuations that appear to be superimposed on lower frequency variations, we average over running 6-min intervals and use the smoothed data to infer the parameters h(t) and z(sub o)(t), constrained by the pressure balance lobe magnetic field B(sub o)(t). Whereas this approach has been used in previous studies, the spatial gnuhen& now provided by the Cluster magnetometers were unavailable or not well constrained in earlier studies. We place the calculated hdf&cknessa in a magnetospheric context by examining the change in thickness with substorm phase for three case study events and 21 events in a superposed epoch analysis. We find that the inferred half-thickness in many cases reflects the nominal changes experienced by the plasma sheet during substorms (i.e., thinning during growth phase, thickening following substorm onset). We conclude with an analysis of the relative contribution of (Delta)B(sub z)/(Delta)X to the cross-tail current density during substorms. We find that (Delta)B(sub z)/(Delta)X can contribute a significant portion of the cross-tail c m n t around substorm onset.

Biological effects of long term fine limestone tailings discharge in a fjord ecosystem.

PubMed

Brooks, Lucy; Melsom, Fredrik; Glette, Tormod

2015-07-15

Benthic infaunal data collected from 1993 to 2010 were analysed to examine the effect of long term discharge of fine limestone tailings on macrofaunal species assemblages in a fjord. Relative distance from the outfall and proportion of fine tailings in the sediment were correlated with benthic community structure. Diversity decreased with increasing proportion of fine tailings. Biological Traits Analysis (BTA) was used to explore the temporal and spatial effects of the tailings gradient on macrofaunal functional attributes. BTA revealed that all stations along a pressure gradient of fine limestone tailings were dominated by free-living species. As the proportion of fine tailings in the sediment increased, there was an increase in fauna that were smaller, highly mobile, living on or nearer the surface sediment, with shorter lifespans. There was a decrease in permanent tube dwellers, those fauna with low or no mobility, that live deeper in the sediment and have longer lifespans (>5 yrs). Copyright © 2015 Elsevier Ltd. All rights reserved.

A model independent search for new physics in final states containing leptons at the DO experiment

NASA Astrophysics Data System (ADS)

Piper, Joel M.

The standard model is known to be the low energy limit of a more general theory. Several consequences of the standard model point to a strong probability of new physics becoming experimentally visible in high energy collisions of a few TeV, resulting in high momentum objects. The specific signatures of these collisions are topics of much debate. Rather than choosing a specific signature, this analysis broadly searches the data, preferring breadth over sensitivity. In searching for new physics, several different approaches are used. These include the comparison of data with standard model background expectation in overall number of events, comparisons of distributions of many kinematic variables, and finally comparisons on the tails of distributions that sum the momenta of the objects in an event. With 1.07 fb-1 at the DO experiment, we find no evidence of physics beyond the standard model. Several discrepancies from the standard model were found, but none of these provide a compelling case for new physics.

Using white-tailed deer (Odocoileus virginianus) in infectious disease research

USDA-ARS?s Scientific Manuscript database

Between 1940 and 2004 over 335 emerging infectious disease events were reported. The majority involved zoonoses, most of which were of wildlife origin or had an important wildlife host. There is reason to believe this trend of increasing emerging diseases will continue. For that reason, understandin...

The Effect of Plasma Exposure on Tail Regeneration of Tadpoles Xenopus Laevis

NASA Astrophysics Data System (ADS)

June, Joyce; Rivie, Adonis; Ezuduemoih, Raphael; Menon, Jaishri; Martus, Kevin

2014-03-01

Wound healing requires a balanced combination of nutrients and growth factors for healing and tissue regeneration. The effect of plasma exposure on tail regeneration of tadpoles, Xenopus laevis is investigated. The exposure of the wound to the helium plasma immediately followed the amputation of 40% of the tail. Amputation of the tail initiates regeneration of spinal cord, muscle, notochord, skin and connective tissues. By 24 h, the wound was covered by wound epithelium and blastema was formed by day 5. There was increased angiogenesis in plasma exposed tail regenerate compared to the control following 5 d post amputation. Observed was an increase in NO production in the regenerate of plasma exposed tadpoles was derived from increased activity of nNOS and iNOS. Western blot analysis for vascular endothelial growth factor showed stronger bands for the protein in amputated tadpoles of both the groups. Analysis of the composition and characteristics of the plasma using optical emission spectroscopy indicates excited state species consisting of N2, N2+,and OH is present in the plasma. This study was supported, in part, by the NSF Grant 1040108.

Tail Buffeting

NASA Technical Reports Server (NTRS)

Abdrashitov, G.

1943-01-01

An approximate theory of buffeting is here presented, based on the assumption of harmonic disturbing forces. Two cases of buffeting are considered: namely, for a tail angle of attack greater and less than the stalling angle, respectively. On the basis of the tests conducted and the results of foreign investigators, a general analysis is given of the nature of the forced vibrations the possible load limits on the tail, and the methods of elimination of buffeting.

Heavy metal and nutrient uptake in plants colonizing post-flotation copper tailings.

PubMed

Kasowska, Dorota; Gediga, Krzysztof; Spiak, Zofia

2018-01-01

Copper ore mining and processing release hazardous post-flotation wastes that are difficult for remediation. The studied tailings were extremely rich in Cu (1800 mg kg -1 ) and contaminated with Co and Mn, and contained very little available forms of P, Fe, and Zn. The plants growing in tailings were distinctly enriched in Cu, Cd, Co, Ni, and Pb, and the concentration of copper achived the critical toxicity level in shoots of Cerastium arvense and Polygonum aviculare. The redundancy analysis demonstrated significant relationship between the concentration of available forms of studied elements in substrate and the chemical composition of plant shoots. Results of the principal component analysis enabled to distinguish groups of plants which significantly differed in the pattern of element accumulation. The grass species Agrostis stolonifera and Calamagrostis epigejos growing in the tailings accumulated significantly lower amounts of Cu, but they also had the lowest levels of P, Fe, and Zn in comparison to dicotyledonous. A. stolonifera occurred to be the most suitable species for phytostabilization of the tailings with regard to its low shoot Cu content and more efficient acquisition of limiting nutrients in relation to C. epigejos. The amendments improving texture, phosphorus fertilization, and the introduction of native leguminous species were recommended for application in the phytoremediation process of the tailings.

In vivo analysis of polyadenylation in prokaryotes.

PubMed

Mohanty, Bijoy K; Kushner, Sidney R

2014-01-01

Polyadenylation at the 3' ends of mRNAs, tRNAs, rRNAs, and sRNAs plays important roles in RNA metabolism in both prokaryotes and eukaryotes. However, the nature of poly(A) tails in prokaryotes is distinct compared to their eukaryotic counterparts. Specifically, depending on the organism, eukaryotic poly(A) tails average between 50 and >200 nt and can easily be isolated by several techniques involving oligo(dT)-dependent cDNA amplification. In contrast, the bulk of the poly(A) tails present on prokaryotic transcripts is relatively short (<10 nt) and is difficult to characterize using similar techniques. This chapter describes methods that can circumvent these problems. For example, we discuss how to isolate total RNA and characterize its overall polyadenylation status employing a poly(A) sizing assay. Furthermore, we describe a technique involving RNase H treatment of total RNA followed by northern analysis in order to distinguish length of poly(A) tails on various types of transcripts. Finally, we outline a useful procedure to clone the poly(A) tails of specific transcripts using 5'-3' end-ligated RNA, which is independent of oligo(dT)-dependent cDNA amplification. These approaches are particularly helpful in analyzing transcripts with either short or long poly(A) tails both in prokaryotes and eukaryotes.

Comprehensive Evaluation of Soil Near Uranium Tailings, Beishan City, China.

PubMed

Xun, Yan; Zhang, Xinjia; Chaoliang, Chen; Luo, Xuegang; Zhang, Yu

2018-06-01

To evaluate the impact of uranium tailings on soil composition and soil microbial, six soil samples at different distance from the uranium tailings (Beishan City, China) were collected for further analysis. Concentrations of radionuclides ( 238 U and 232 Th), heavy metals (Mn, Cd, Cr, Ni, Zn, and Pb) and organochlorine pesticide were determined by ICP-MS and GC, they were significantly higher than those of the control. And the Average Well Color Development as well as the Shannon, the Evenness, and the Simpson index were calculated to evaluate the soil microbial diversity. The carbon utilization model of soil microbial community was also analyzed by Biolog-eco. All results indicated that uranium tailings leaded to excessive radionuclides and heavy metals, and decreased the diversity of the soil microbial community. Our study will provide a valuable basis for soil quality evaluation around uranium tailing repositories and lay a foundation for the management and recovery of uranium tailings.

Static Longitudinal Stability and Control Characteristics of an Unswept Wing and Unswept Horizontal-Tail Configuration at Mach Numbers from 0.70 to 2.22

NASA Technical Reports Server (NTRS)

Peterson, Victor L.; Menees, Gene P.

1959-01-01

Results of an investigation of the static longitudinal stability and control characteristics of an aspect-ratio-3.1, unswept wing configuration equipped with an aspect-ratio-4, unswept horizontal tail are presented without analysis for the Mach number range from 0.70 to 2.22. The hinge line of the all-movable horizontal tail was in the extended wing chord plane, 1.66 wing mean aerodynamic chords behind the reference center of moments. The ratio of the area of the exposed horizontal-tail panels to the total area of the wing was 13.3 percent and the ratio of the total areas was 19.9 percent. Data are presented at angles of attack ranging"from -6 deg to +18 deg for the horizontal tail set at angles ranging from +5 deg to -20 deg and for the tail removed.

Probabilistic Models For Earthquakes With Large Return Periods In Himalaya Region

NASA Astrophysics Data System (ADS)

Chaudhary, Chhavi; Sharma, Mukat Lal

2017-12-01

Determination of the frequency of large earthquakes is of paramount importance for seismic risk assessment as large events contribute to significant fraction of the total deformation and these long return period events with low probability of occurrence are not easily captured by classical distributions. Generally, with a small catalogue these larger events follow different distribution function from the smaller and intermediate events. It is thus of special importance to use statistical methods that analyse as closely as possible the range of its extreme values or the tail of the distributions in addition to the main distributions. The generalised Pareto distribution family is widely used for modelling the events which are crossing a specified threshold value. The Pareto, Truncated Pareto, and Tapered Pareto are the special cases of the generalised Pareto family. In this work, the probability of earthquake occurrence has been estimated using the Pareto, Truncated Pareto, and Tapered Pareto distributions. As a case study, the Himalayas whose orogeny lies in generation of large earthquakes and which is one of the most active zones of the world, has been considered. The whole Himalayan region has been divided into five seismic source zones according to seismotectonic and clustering of events. Estimated probabilities of occurrence of earthquakes have also been compared with the modified Gutenberg-Richter distribution and the characteristics recurrence distribution. The statistical analysis reveals that the Tapered Pareto distribution better describes seismicity for the seismic source zones in comparison to other distributions considered in the present study.

Static strain and vibration characteristics of a metal semimonocoque helicopter tail cone of moderate size

NASA Technical Reports Server (NTRS)

Bielawa, Richard L.; Hefner, Rachel E.; Castagna, Andre

1991-01-01

The results are presented of an analytic and experimental research program involving a Sikorsky S-55 helicopter tail cone directed ultimately to the improved structural analysis of airframe substructures typical of moderate sized helicopters of metal semimonocoque construction. Experimental static strain and dynamic shake-testing measurements are presented. Correlation studies of each of these tests with a PC-based finite element analysis (COSMOS/M) are described. The tests included static loadings at the end of the tail cone supported in the cantilever configuration as well as vibrational shake-testing in both the cantilever and free-free configurations.

A Tail of Two Sites: A Bipartite Mechanism for Recognition of Notch Ligands by Mind Bomb E3 Ligases

DOE Office of Scientific and Technical Information (OSTI.GOV)

McMillan, Brian J.; Schnute, Björn; Ohlenhard, Nadja

Mind bomb (Mib) proteins are large, multi-domain E3 ligases that promote ubiquitination of the cytoplasmic tails of Notch ligands. This ubiquitination step marks the ligand proteins for epsin-dependent endocytosis, which is critical for in vivo Notch receptor activation. Here we present crystal structures of the substrate recognition domains of Mib1, both in isolation and in complex with peptides derived from Notch ligands. The structures, in combination with biochemical, cellular, and in vivo assays, show that Mib1 contains two independent substrate recognition domains that engage two distinct epitopes from the cytoplasmic tail of the ligand Jagged1, one in the intracellular membranemore » proximal region and the other near the C terminus. Together, these studies provide insights into the mechanism of ubiquitin transfer by Mind bomb E3 ligases, illuminate a key event in ligand-induced activation of Notch receptors, and identify a potential target for therapeutic modulation of Notch signal transduction in disease.« less

Low-buoyancy thermochemical plumes resolve controversy of classical mantle plume concept

PubMed Central

Dannberg, Juliane; Sobolev, Stephan V.

2015-01-01

The Earth's biggest magmatic events are believed to originate from massive melting when hot mantle plumes rising from the lowermost mantle reach the base of the lithosphere. Classical models predict large plume heads that cause kilometre-scale surface uplift, and narrow (100 km radius) plume tails that remain in the mantle after the plume head spreads below the lithosphere. However, in many cases, such uplifts and narrow plume tails are not observed. Here using numerical models, we show that the issue can be resolved if major mantle plumes contain up to 15–20% of recycled oceanic crust in a form of dense eclogite, which drastically decreases their buoyancy and makes it depth dependent. We demonstrate that, despite their low buoyancy, large enough thermochemical plumes can rise through the whole mantle causing only negligible surface uplift. Their tails are bulky (>200 km radius) and remain in the upper mantle for 100 millions of years. PMID:25907970

2015 Uranium Mill Tailings Radiation Control Act (UMTRCA) Title ll Annual Report, L-Bar, New Mexico Disposal Site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frazier, William; Johnson, Dick

The L-Bar, New Mexico, Uranium Mill Tailings Radiation Control Act (UMTRCA) Title II Disposal Site was inspected on August 18, 2015. The tailings impoundment was in excellent condition. Erosion and vegetation measurements to monitor the condition of the impoundment cover indicated that no erosion is occurring, and perennial vegetation foliar cover at the measurement plots increased substantially compared to previous years due to above-average precipitation for the year. A short segment of the perimeter fence near the site entrance was realigned in spring 2015 because a gully was undermining the fence corner. Loose fence strands at another location were repairedmore » during the inspection, and a section of fence needs to be realigned to avoid areas affected by deep gullies and sediment deposition. Inspectors identified no other maintenance needs or cause for a follow-up inspection. Groundwater monitoring is required every 3 years. The next monitoring event will be in 2016.« less

A Tail of Two Sites: A Bipartite Mechanism for Recognition of Notch Ligands by Mind Bomb E3 Ligases

PubMed Central

McMillan, Brian J.; Schnute, Björn; Ohlenhard, Nadja; Zimmerman, Brandon; Miles, Laura; Beglova, Natalia; Klein, Thomas; Blacklow, Stephen C.

2015-01-01

Summary Mind bomb (Mib) proteins are large, multi-domain E3 ligases that promote ubiquitination of the cytoplasmic tails of Notch ligands. This ubiquitination step marks the ligand proteins for epsin-dependent endocytosis, which is critical for in vivo Notch receptor activation. We present here crystal structures of the substrate recognition domains of Mib1, both in isolation and in complex with peptides derived from Notch ligands. The structures, in combination with biochemical, cellular and in vivo assays, show that Mib1 contains two independent substrate recognition domains that engage two distinct epitopes from the cytoplasmic tail of the ligand Jagged1, one in the intracellular membrane proximal region and the other near the C-terminus. Together, these studies provide new insights into the mechanism of ubiquitin transfer by Mind bomb E3 ligases, illuminate a key event in ligand-induced activation of Notch receptors, and identify a potential new target for therapeutic modulation of Notch signal transduction in disease. PMID:25747658

International Halley Watch: Discipline specialists for large scale phenomena

NASA Technical Reports Server (NTRS)

Brandt, J. C.; Niedner, M. B., Jr.

1986-01-01

The largest scale structures of comets, their tails, are extremely interesting from a physical point of view, and some of their properties are among the most spectacular displayed by comets. Because the tail(s) is an important component part of a comet, the Large-Scale Phenomena (L-SP) Discipline was created as one of eight different observational methods in which Halley data would be encouraged and collected from all around the world under the aspices of the International Halley Watch (IHW). The L-SP Discipline Specialist (DS) Team resides at NASA/Goddard Space Flight Center under the leadership of John C. Brandt, Malcolm B. Niedner, and their team of image-processing and computer specialists; Jurgan Rahe at NASA Headquarters completes the formal DS science staff. The team has adopted the study of disconnection events (DE) as its principal science target, and it is because of the rapid changes which occur in connection with DE's that such extensive global coverage was deemed necessary to assemble a complete record.

A Tail of Two Sites: A Bipartite Mechanism for Recognition of Notch Ligands by Mind Bomb E3 Ligases

DOE PAGES

McMillan, Brian J.; Schnute, Björn; Ohlenhard, Nadja; ...

2015-03-05

Mind bomb (Mib) proteins are large, multi-domain E3 ligases that promote ubiquitination of the cytoplasmic tails of Notch ligands. This ubiquitination step marks the ligand proteins for epsin-dependent endocytosis, which is critical for in vivo Notch receptor activation. Here we present crystal structures of the substrate recognition domains of Mib1, both in isolation and in complex with peptides derived from Notch ligands. The structures, in combination with biochemical, cellular, and in vivo assays, show that Mib1 contains two independent substrate recognition domains that engage two distinct epitopes from the cytoplasmic tail of the ligand Jagged1, one in the intracellular membranemore » proximal region and the other near the C terminus. Together, these studies provide insights into the mechanism of ubiquitin transfer by Mind bomb E3 ligases, illuminate a key event in ligand-induced activation of Notch receptors, and identify a potential target for therapeutic modulation of Notch signal transduction in disease.« less

A tail like no other. The RPC-MAG view of Rosetta's tail excursion at comet 67P/Churyumov-Gerasimenko

NASA Astrophysics Data System (ADS)

Volwerk, Martin; Goetz, Charlotte; Richter, Ingo; Delva, Magda; Ostaszewski, Katharina; Schwingenschuh, Konrad; Glassmeier, Karl-Heinz

2018-06-01

Context. The Rosetta Plasma Consortium (RPC) magnetometer (MAG) data during the tail excursion in March-April 2016 are used to investigate the magnetic structure of and activity in the tail region of the weakly outgassing comet 67P/Churyumov-Gerasimenko (67P). Aims: The goal of this study is to compare the large scale (near) tail structure with that of earlier missions to strong outgassing comets, and the small scale turbulent energy cascade (un)related to the singing comet phenomenon. Methods: The usual methods of space plasma physics are used to analyse the magnetometer data, such as minimum variance analysis, spectral analysis, and power law fitting. Also the cone angle and clock angle of the magnetic field are calculated to interpret the data. Results: It is found that comet 67P does not have a classical draped magnetic field and no bi-lobal tail structure at this late stage of the mission when the comet is already at 2.7 AU distance from the Sun. The main magnetic field direction seems to be more across the tail direction, which may implicate an asymmetric pick-up cloud. During periods of singing comet activity the propagation direction of the waves is at large angles with respect to the magnetic field and to the radial direction towards the comet. Turbulent cascade of magnetic energy from large to small scales is different in the presence of singing as without it.

On the use of the indicial-function concept in the analysis of unsteady motions of wings and wing-tail combinations

NASA Technical Reports Server (NTRS)

Tobak, Murray

1954-01-01

The concept of indicial aerodynamic functions is applied to the analysis of the short-period pitching mode of aircraft. By the use of simple physical relationships associated with the indicial-function relationships concept, quantitative studies are made of the separate effects on the damping in pitch of changes in Mach number, aspect ratio, plan-form shape, and frequency. The concept is further shown to be of value in depicting physically the induced effects on a tail surface which follows in the wake of a starting forward surface. Considerable effort is devoted to the development of theoretical techniques whereby the transient response in lift at the tail to the wing wake may be estimated. Numerical results for several representative cases are presented, and these are analyzed to reassess the importance of the contribution to the rotary damping moment of the interference lift at the tail.

Lymphocyte DNA damage in bus manufacturing workers.

PubMed

Zhu, C Q; Lam, T H; Jiang, C Q

2001-04-05

To study the effect of occupational exposure, smoking, and drinking on lymphocyte DNA damage in bus manufacturing workers, 346 employees (106 women and 240 men) from six job categories (welders, mechanics, painters, and assembling, auxiliary and managerial workers) in a bus manufacturing factory in Guangzhou were included. Significant differences of tail moment among the six job categories were found (P=0.003) with adjustment for age and gender. Smoking increased tail moment significantly (3.14 (2.89-3.40) versus 2.79 microm (2.63-2.97), P=0.023). Analysis of covariance showed that occupational exposure (P=0.001) and smoking (P=0.019) had significant effect on tail moment after adjusting for all factors, whereas age and gender had no effect on DNA damage. Stratified analysis showed that painters (P=0.002), auxiliary workers (P=0.011), and mechanics (P=0.044) had larger tail moments than managerial workers after adjusting for age, gender, smoking, and drinking.

Nepenthesin from monkey cups for hydrogen/deuterium exchange mass spectrometry.

PubMed

Rey, Martial; Yang, Menglin; Burns, Kyle M; Yu, Yaping; Lees-Miller, Susan P; Schriemer, David C

2013-02-01

Studies of protein dynamics, structure and interactions using hydrogen/deuterium exchange mass spectrometry (HDX-MS) have sharply increased over the past 5-10 years. The predominant technology requires fast digestion at pH 2-3 to retain deuterium label. Pepsin is used almost exclusively, but it provides relatively low efficiency under the constraints of the experiment, and a selectivity profile that renders poor coverage of intrinsically disordered regions. In this study we present nepenthesin-containing secretions of the pitcher plant Nepenthes, commonly called monkey cups, for use in HDX-MS. We show that nepenthesin is at least 1400-fold more efficient than pepsin under HDX-competent conditions, with a selectivity profile that mimics pepsin in part, but also includes efficient cleavage C-terminal to "forbidden" residues K, R, H, and P. High efficiency permits a solution-based analysis with no detectable autolysis, avoiding the complication of immobilized enzyme reactors. Relaxed selectivity promotes high coverage of disordered regions and the ability to "tune" the mass map for regions of interest. Nepenthesin-enriched secretions were applied to an analysis of protein complexes in the nonhomologous end-joining DNA repair pathway. The analysis of XRCC4 binding to the BRCT domains of Ligase IV points to secondary interactions between the disordered C-terminal tail of XRCC4 and remote regions of the BRCT domains, which could only be identified with a nepenthesin-based workflow. HDX data suggest that stalk-binding to XRCC4 primes a BRCT conformation in these remote regions to support tail interaction, an event which may be phosphoregulated. We conclude that nepenthesin is an effective alternative to pepsin for all HDX-MS applications, and especially for the analysis of structural transitions among intrinsically disordered proteins and their binding partners.

Structured plasma sheet thinning observed by Galileo and 1984-129

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reeves, G.D.; Belian, R.D.; Fritz, T.A.

On December 8, 1990, the Galileo spacecraft used the Earth for a gravity assist on its way to Jupiter. Its trajectory was such that is crossed geosynchronous orbit at approximately local midnight between 1900 and 2000 UT. At the same time, spacecraft 1984-129 was also located at geosynchronous orbit near local midnight. Several flux dropout events were observed when the two spacecraft were in the near-Earth plasma sheet in the same local time sector. Flux dropout events are associated with plasma sheet thinning in the near-Earth tail during the growth phase of substorms. This period is unique in that Galileomore » provided a rapid radial profile of the near-Earth plasma sheet while 1984-129 provided an azimuthal profile. With measurements from these two spacecraft the authors can distinguish between spatial structures and temporal changes. Their observations confirm that the geosynchronous flux dropout events are consistent with plasma sheet thinning which changes the spacecraft`s magnetic connection from the trapping region to the more distant plasma sheet. However, for this period, thinning occurred on two spatial and temporal scales. The geosynchronous dropouts were highly localized phenomena of 30 min duration superimposed on a more global reconfiguration of the tail lasting approximately 4 hours. 28 refs., 10 figs.« less

The study of comets, part 1. [conference on photometry and spectrum analysis of Kohoutek comet and comet tails

NASA Technical Reports Server (NTRS)

Donn, B. (Editor); Mumma, M. J. (Editor); Jackson, W. M. (Editor); Ahearn, M. (Editor); Harrington, R. (Editor)

1976-01-01

Papers are presented dealing with observations of comets. Topic discussed include: photometry, polarimetry, and astrometry of comets; detection of water and molecular transitions in comets; ion motions in comet tails; determination of comet brightness and luminosity; and evolution of cometary orbits. Emphasis is placed on analysis of observations of comet Kohoutek.

Mine tailings composition in a historic site: implications for ecological restoration.

PubMed

Courtney, R

2013-02-01

Ecological restoration, using tolerant plant species and nutrient additions, is a low-cost option to decrease environmental risks associated with mine tailings. An attempt was previously made to establish such a vegetation cover on an abandoned tailings facility in Southern Ireland. Historically, the tailings site has been prone to dusting and is a potential source of contamination to the surrounding environment. The site was examined to determine the success of the previous restoration plan used to revegetate the site and to determine its suitability for further restoration. Three distinct floristic areas were identified (grassland, poor grassland and bare area) based on herbage compositions and elemental analysis. Surface and subsurface samples were taken to characterise tailings from within these areas of the tailings site. The pH of bare surface tailings (pH, 2.7) was significantly more acidic (p < 0.5) than in other areas. Additionally, negligible net neutralising potential resulted in the tailings being hostile to plant growth. Total metal concentrations in tailings were high (c. 10,000 mg kg(-1) for Pb and up to 20,000 mg kg(-1) for Zn). DTPA-extractable Zn and Pb were 16 and 11 % of the total amount, respectively. Metal content in grasses growing on some areas of the tailings were elevated and demonstrated the inability of the tailings to support sustainable plant growth. Due to the inherently hostile characteristics of these areas, future restoration work will employ capping with a barrier layer.

The X-ray Crystal Structure of the Phage Tail Terminator Protein Reveals the Biologically Relevant Hexameric Rang Structure and Demonstrates a Conserved mechanism of Tail Termination among Divrse Long Tailed Phages

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pell, L.; Liu, A; Edmonds, L

The tail terminator protein (TrP) plays an essential role in phage tail assembly by capping the rapidly polymerizing tail once it has reached its requisite length and serving as the interaction surface for phage heads. Here, we present the 2.7-A crystal structure of a hexameric ring of gpU, the TrP of phage ?. Using sequence alignment analysis and site-directed mutagenesis, we have shown that this multimeric structure is biologically relevant and we have delineated its functional surfaces. Comparison of the hexameric crystal structure with the solution structure of gpU that we previously solved using NMR spectroscopy shows large structural changesmore » occurring upon multimerization and suggests a mechanism that allows gpU to remain monomeric at high concentrations on its own, yet polymerize readily upon contact with an assembled tail tube. The gpU hexamer displays several flexible loops that play key roles in head and tail binding, implying a role for disorder-to-order transitions in controlling assembly as has been observed with other ? morphogenetic proteins. Finally, we have found that the hexameric structure of gpU is very similar to the structure of a putative TrP from a contractile phage tail even though it displays no detectable sequence similarity. This finding coupled with further bioinformatic investigations has led us to conclude that the TrPs of non-contractile-tailed phages, such as ?, are evolutionarily related to those of contractile-tailed phages, such as P2 and Mu, and that all long-tailed phages may utilize a conserved mechanism for tail termination.« less

Bacterial diversity and composition of an alkaline uranium mine tailings-water interface.

PubMed

Khan, Nurul H; Bondici, Viorica F; Medihala, Prabhakara G; Lawrence, John R; Wolfaardt, Gideon M; Warner, Jeff; Korber, Darren R

2013-10-01

The microbial diversity and biogeochemical potential associated with a northern Saskatchewan uranium mine water-tailings interface was examined using culture-dependent and -independent techniques. Morphologically-distinct colonies from uranium mine water-tailings and a reference lake (MC) obtained using selective and non-selective media were selected for 16S rRNA gene sequencing and identification, revealing that culturable organisms from the uranium tailings interface were dominated by Firmicutes and Betaproteobacteria; whereas, MC organisms mainly consisted of Bacteroidetes and Gammaproteobacteria. Ion Torrent (IT) 16S rRNA metagenomic analysis carried out on extracted DNA from tailings and MC interfaces demonstrated the dominance of Firmicutes in both of the systems. Overall, the tailings-water interface environment harbored a distinct bacterial community relative to the MC, reflective of the ambient conditions (i.e., total dissolved solids, pH, salinity, conductivity, heavy metals) dominating the uranium tailings system. Significant correlations among the physicochemical data and the major bacterial groups present in the tailings and MC were also observed. Presence of sulfate reducing bacteria demonstrated by culture-dependent analyses and the dominance of Desulfosporosinus spp. indicated by Ion Torrent analyses within the tailings-water interface suggests the existence of anaerobic microenvironments along with the potential for reductive metabolic processes.

Microbial Diversity and Metal Speciation Changes in Mine Tailings Following Compost-Assisted Direct Planting: A Four-Year Superfund Site Field Study

NASA Astrophysics Data System (ADS)

Maier, R. M.; Gil-Loaiza, J.; Honeker, L. K.; Hottenstein, J. D.; Valentin-Vargas, A.; Jennings, L. L.; Hammond, C.; Neilson, J. W.; Root, R. A.; Chorover, J.

2014-12-01

EPA estimates that future mine tailings remediation costs will exceed US $50 billion using present technologies based on constructing an inert or biological cap on the tailings. Both approaches require large amounts of capping materials that can be difficult and expensive to obtain especially for sites several thousand hectares in size. An alternative technology is direct planting into tailings. However, direct planting alone is not feasible for many legacy sites due to extreme acidity and high metal content which prevent plant germination and growth. Therefore the process must be "assisted" through the addition of amendments such as compost. Here we present results from the first four years of a field study at the Iron King Mine and Humboldt Smelter Superfund site demonstrating the feasibility of compost-assisted direct planting. Parameters measured during the field study included: canopy cover, pH, nutrient content, plant metal uptake, metal(loid) speciation, mineral analysis, microbiome analysis, and plant root-metal-microbe interactions. Integrated analysis of these parameters suggests that even in this "worst-case scenario" mine tailings site (pH 2.5; As and Pb each exceeding 2 g kg-1), we have created a sustainable system. In this system, phyto-catalyzed stabilization of inorganic contaminants in the root zone is driven by plant root exudates and the associated rhizosphere microbial community. The results of this research will be put into context of a larger topic- that of ecological engineering of mine tailings sites - a technique being proposed to prevent creation of acidic conditions and metal(loid) mobilization in the first place.

Microbial Diversity and Metal Speciation Changes in Mine Tailings Following Compost-Assisted Direct Planting: A Four-Year Superfund Site Field Study

NASA Astrophysics Data System (ADS)

Maier, R. M.; Gil-Loaiza, J.; Honeker, L. K.; Hottenstein, J. D.; Valentin-Vargas, A.; Jennings, L. L.; Hammond, C.; Neilson, J. W.; Root, R. A.; Chorover, J.

2015-12-01

EPA estimates that future mine tailings remediation costs will exceed US $50 billion using present technologies based on constructing an inert or biological cap on the tailings. Both approaches require large amounts of capping materials that can be difficult and expensive to obtain especially for sites several thousand hectares in size. An alternative technology is direct planting into tailings. However, direct planting alone is not feasible for many legacy sites due to extreme acidity and high metal content which prevent plant germination and growth. Therefore the process must be "assisted" through the addition of amendments such as compost. Here we present results from the first four years of a field study at the Iron King Mine and Humboldt Smelter Superfund site demonstrating the feasibility of compost-assisted direct planting. Parameters measured during the field study included: canopy cover, pH, nutrient content, plant metal uptake, metal(loid) speciation, mineral analysis, microbiome analysis, and plant root-metal-microbe interactions. Integrated analysis of these parameters suggests that even in this "worst-case scenario" mine tailings site (pH 2.5; As and Pb each exceeding 2 g kg-1), we have created a sustainable system. In this system, phyto-catalyzed stabilization of inorganic contaminants in the root zone is driven by plant root exudates and the associated rhizosphere microbial community. The results of this research will be put into context of a larger topic- that of ecological engineering of mine tailings sites - a technique being proposed to prevent creation of acidic conditions and metal(loid) mobilization in the first place.

MESSENGER Observations of Reconnection and Its Effects on Mercury's Magnetosphere

NASA Technical Reports Server (NTRS)

Slavin, James A.; Anderson, Brian J.; Baker, Daniel N.; Benna, Mehdi; Boardsen, Scott A.; Gloeckler, George; Gold, Robert E.; Ho, George C.; Imber, Suzanne M.; Korth, Haje;

Speciation and characterization of arsenic in Ketza River mine tailings using X-ray absorption spectroscopy.

PubMed

Paktunc, Dogan; Foster, Andrea; Laflamme, Gilles

2003-05-15

Ketza River mine tailings deposited underwater and those exposed near the tailings impoundment contain approximately 4 wt % As. Column-leaching tests indicated the potential for high As releases from the tailings. The tailings are composed dominantly of iron oxyhydroxides, quartz, calcite, dolomite, muscovite, ferric arsenates, and calcium-iron arsenates. Arsenopyrite and pyrite are trace constituents. Chemical compositions of iron oxyhydroxide and arsenate minerals are highly variable. The XANES spectra indicate that arsenic occurs as As(V) in tailings, but air-drying prior to analysis may have oxidized lower-valent As. The EXAFS spectra indicate As-Fe distances of 3.35-3.36 A for the exposed tailings and 3.33-3.35 A for the saturated tailings with coordination numbers of 0.96-1.11 and 0.46-0.64, respectively. The As-Ca interatomic distances ranging from 4.15 to 4.18 A and the coordination numbers of 4.12-4.58 confirm the presence of calcium-iron arsenates in the tailings. These results suggest that ferric arsenates and inner-sphere corner sharing or bidentate-binuclear attachment of arsenate tetrahedra onto iron hydroxide octahedra are the dominant form of As in the tailings. EXAFS spectra indicate that the exposed tailings are richer in arsenate minerals whereas the saturated tailings are dominated by the iron oxyhydroxides, which could help explain the greater release of As from the exposed tailings during leaching tests. It is postulated that the dissolution of ferric arsenates during flow-through experiments caused the high As releases from both types of tailings. Arsenic tied to iron oxyhydroxides as adsorbed species are considered stable; however, iron oxyhydroxides having low Fe/As molar ratios may not be as stable. Continued As releases from the tailings are likely due to dissolution of both ferric and calcium-iron arsenates and desorption of As from high-As bearing iron oxyhydroxides during aging.

Speciation and characterization of arsenic in Ketza River mine tailings using x-ray absorption spectroscopy

USGS Publications Warehouse

Paktunc, D.; Foster, A.; Laflamme, G.

2003-01-01

Ketza River mine tailings deposited underwater and those exposed near the tailings impoundment contain approximately 4 wt % As. Column-leaching tests indicated the potential for high As releases from the tailings. The tailings are composed dominantly of iron oxyhydroxides, quartz, calcite, dolomite, muscovite, ferric arsenates, and calcium-iron arsenates. Arsenopyrite and pyrite are trace constituents. Chemical compositions of iron oxyhydroxide and arsenate minerals are highly variable. The XANES spectra indicate that arsenic occurs as As(V) in tailings, but air-drying prior to analysis may have oxidized lower-valent As. The EXAFS spectra indicate As-Fe distances of 3.35-3.36 A?? for the exposed tailings and 3.33-3.35 A?? for the saturated tailings with coordination numbers of 0.96-1.11 and 0.46-0.64, respectively. The As-Ca interatomic distances ranging from 4.15 to 4.18 A?? and the coordination numbers of 4.12-4.58 confirm the presence of calcium-iron arsenates in the tailings. These results suggest that ferric arsenates and inner-sphere corner sharing or bidentatebinuclear attachment of arsenate tetrahedra onto iron hydroxide octahedra are the dominant form of As in the tailings. EXAFS spectra indicate that the exposed tailings are richer in arsenate minerals whereas the saturated tailings are dominated by the iron oxyhydroxides, which could help explain the greater release of As from the exposed tailings during leaching tests. It is postulated that the dissolution of ferric arsenates during flow-through experiments caused the high As releases from both types of tailings. Arsenic tied to iron oxyhydroxides as adsorbed species are considered stable; however, iron oxyhydroxides having low Fe/As molar ratios may not be as stable. Continued As releases from the tailings are likely due to dissolution of both ferric and calcium-iron arsenates and desorption of As from high-As bearing iron oxyhydroxides during aging.

Is the tail of 73P-B/Schwassman-Wachman 1 chasing its Remnant Nucleus?

NASA Technical Reports Server (NTRS)

Wooden, D. H.; Harker, D. E.; Woodward, C. E.; Ehrenfreund, P.; Geers, V. C.; Waters, L. B. F. M.; Cox, N.

2006-01-01

We report on imaging observations of comets 73P-B/Schwassmann-Wachmann 1 and 73P-C/Schwassmann-Wachmann 1 at the IRTF with SpeX (J, K) and MRSI (10 micron narrow band filter set) on 2006 Apr 17-19 UT and 2006 Jun 18-19, and at the VLT with VISIR (1 0 micron narrow band filters, 20 micron) on 2006 Apr 17 UT. Compared to when the comet was in the midst of breaking up in mid-April, in June the tail of 73P-B is much fainter and there is a compact coma detected well separated and ahead of its tail, and fainter than the tail. The width of the tail in J, K, and 10 micron images indicates that the pieces that were shed in April must still be outgassing and releasing small particles into the tail-shaped coma; small grains have relatively short lifetimes in the coma due to radiation pressure. The trailing tail is now well separated from the faint "leader of the pack" compact coma that we suppose is a remaining piece of the nucleus. It will be interesting to see post-perihelion if this "leading compact coma" object continues to gain distance on the debris and continues to weakly outgas and shed small grains. One wonders if it expended its volatiles (available to the surface) in breaking up; a short-lived release of volatiles occurred in the Deep Impact event with comet 9P/Tempel 1. 73P-C is extended with a more elongated coma structure closer to perihelion compared to 2006 Apr 18- 19 UT. The SEDs from 2006 Apr and Jun from SpeX-MIRSI (IRTF) are compared with VISIR (VLT) SEDs from 2006 Apr. Information on the heliocentric dependence of the activity and dust release yields insights into the origin of activity and the relationship between activity and grain size distribution/mineralogy.

Two-Dimensional Fourier Transform Applied to Helicopter Flyover Noise

NASA Technical Reports Server (NTRS)

Santa Maria, Odilyn L.

1999-01-01

A method to separate main rotor and tail rotor noise from a helicopter in flight is explored. Being the sum of two periodic signals of disproportionate, or incommensurate frequencies, helicopter noise is neither periodic nor stationary, but possibly harmonizable. The single Fourier transform divides signal energy into frequency bins of equal size. Incommensurate frequencies are therefore not adequately represented by any one chosen data block size. A two-dimensional Fourier analysis method is used to show helicopter noise as harmonizable. The two-dimensional spectral analysis method is first applied to simulated signals. This initial analysis gives an idea of the characteristics of the two-dimensional autocorrelations and spectra. Data from a helicopter flight test is analyzed in two dimensions. The test aircraft are a Boeing MD902 Explorer (no tail rotor) and a Sikorsky S-76 (4-bladed tail rotor). The results show that the main rotor and tail rotor signals can indeed be separated in the two-dimensional Fourier transform spectrum. The separation occurs along the diagonals associated with the frequencies of interest. These diagonals are individual spectra containing only information related to one particular frequency.

Numerical analysis of band tails in nanowires and their effects on the performance of tunneling field-effect transistors

NASA Astrophysics Data System (ADS)

Tanaka, Takahisa; Uchida, Ken

2018-06-01

Band tails in heavily doped semiconductors are one of the important parameters that determine transfer characteristics of tunneling field-effect transistors. In this study, doping concentration and doing profile dependences of band tails in heavily doped Si nanowires were analyzed by a nonequilibrium Green function method. From the calculated band tails, transfer characteristics of nanowire tunnel field-effect transistors were numerically analyzed by Wentzel–Kramer–Brillouin approximation with exponential barriers. The calculated transfer characteristics demonstrate that the band tails induced by dopants degrade the subthreshold slopes of Si nanowires from 5 to 56 mV/dec in the worst case. On the other hand, surface doping leads to a high drain current while maintaining a small subthreshold slope.

An analysis of the effects of aeroelasticity on static longitudinal stability and control of a swept-wing airplane

NASA Technical Reports Server (NTRS)

Skoog, Richard B

1957-01-01

A theoretical analysis has been made of the effects of aeroelasticity on the static longitudinal stability and elevator angle required for balance of an airplane. The analysis is based on the familiar stability equation expressing the contribution of wing and tail to longitudinal stability. Effects of wing, tail, and fuselage flexibility are considered. Calculated effects are shown for a swept-wing bomber of relatively high flexibility.

Actin-based propulsion of a microswimmer.

PubMed

Leshansky, A M

2006-07-01

A simple hydrodynamic model of actin-based propulsion of microparticles in dilute cell-free cytoplasmic extracts is presented. Under the basic assumption that actin polymerization at the particle surface acts as a force dipole, pushing apart the load and the free (nonanchored) actin tail, the propulsive velocity of the microparticle is determined as a function of the tail length, porosity, and particle shape. The anticipated velocities of the cargo displacement and the rearward motion of the tail are in good agreement with recently reported results of biomimetic experiments. A more detailed analysis of the particle-tail hydrodynamic interaction is presented and compared to the prediction of the simplified model.

Pioneer 7 observations of plasma flow and field reversal regions in the distant geomagnetic tail

NASA Technical Reports Server (NTRS)

Walker, R. C.; Lazarus, A. J.; Villante, U.

1975-01-01

The present paper gives the results of an extensive analysis of plasma and magnetic-field data from Pioneer 7 taken in the geomagnetic tail approximately 1000 earth radii downstream from earth. The principal observations are: (1) measurable fluxes of protons in the tail, flowing away from earth, sometimes with a double-peaked velocity distribution; (2) field reversal regions in which the field changes from radial to antiradial by a vector rotation in the north-south plane; and (3) general characteristics of the tail similar to those observed near earth with good correlation between taillike magnetic fields and plasma.

A Review of Recent Advances in Research on Extreme Heat Events

NASA Technical Reports Server (NTRS)

Horton, Radley M.; Mankin, Justin S.; Lesk, Corey; Coffel, Ethan; Raymond, Colin

2016-01-01

Reviewing recent literature, we report that changes in extreme heat event characteristics such as magnitude, frequency, and duration are highly sensitive to changes in mean global-scale warming. Numerous studies have detected significant changes in the observed occurrence of extreme heat events, irrespective of how such events are defined. Further, a number of these studies have attributed present-day changes in the risk of individual heat events and the documented global-scale increase in such events to anthropogenic-driven warming. Advances in process-based studies of heat events have focused on the proximate land-atmosphere interactions through soil moisture anomalies, and changes in occurrence of the underlying atmospheric circulation associated with heat events in the mid-latitudes. While evidence for a number of hypotheses remains limited, climate change nevertheless points to tail risks of possible changes in heat extremes that could exceed estimates generated from model outputs of mean temperature. We also explore risks associated with compound extreme events and nonlinear impacts associated with extreme heat.

ISTP observations of plasmoid ejection: IMP 8 and Geotail

DOE Office of Scientific and Technical Information (OSTI.GOV)

Slavin, J.A.; Fairfield, D.H.; Kuznetsova, M.M.

1998-01-01

IMP 8 and Geotail observations of traveling compression regions (TCRs) and plasmoids, respectively, are used to investigate plasmoid formation and ejection. One year of IMP 8 magnetometer measurements taken during the distant tail phase of the Geotail mission were searched for TCRs, which signal the release of plasmoids down the tail. A total of 10 such intervals were identified. Examination of the Geotail measurements showed that this spacecraft was in the magnetotail for only three of the events. However, in all three cases, clear plasmoid signatures were observed at Geotail. These plasmoids were observed at distances of X={minus}170 to {minus}197more » R{sub E}. The in situ plasma velocities in these plasmoids are found to exceed the time-of-flight speeds between IMP 8 and Geotail suggesting that some further acceleration may have taken place following release. The inferred lengths of these plasmoids, {approximately}27{endash}40 R{sub E}, are comparable to the downtail distance of IMP 8. This indicates that TCR at IMP 8 can be caused by plasmoids forming not only earthward but also adjacent to or just tailward of the spacecraft. The closeness of IMP 8 to the point of plasmoid formation is confirmed by the small, {approximately}0{endash}3min, time delays between the TCR perturbation and substorm onset. In two of the plasmoid events, high-speed earthward plasma flows and streaming energetic particles were measured in the plasma sheet boundary layer surrounding the plasmoid along with large positive B{sub z} at the leading edge of the plasmoid suggesting that the core of the plasmoid was {open_quotes}snow plowing{close_quotes} into flux tubes recently closed at an active distant neutral line. In summary, these unique two-point measurements clearly show plasmoid ejection near substorm onset, their rapid movement to the distant tail and their further evolution as they encounter preexisting X lines in the distant tail. {copyright} 1998 American Geophysical Union« less

BATSE Observations of Gamma-Ray Burst Tails

NASA Technical Reports Server (NTRS)

Connaughton, Valerie; Six, N. Frank (Technical Monitor)

2001-01-01

With the discovery of low-energy radiation appearing to come from the site of gamma-ray bursts in the hours to weeks after the initial burst of gamma rays, it would appear that astronomers have seen a cosmological imprint made by the burster on its surroundings. I discuss in this paper the phenomenon of post-burst emission in BATSE (Burst and Transient Source Experiment) gamma-ray bursts at energies traditionally associated with prompt emission. By summing the background-subtracted signals from hundreds of bursts, I find that tails out to hundreds of seconds after the trigger may be a common feature of long events (duration greater than 2s), and perhaps of the shorter bursts at a lower and shorter-lived level. The tail component appears independent of both the duration (within the long GRB sample) and brightness of the prompt burst emission, and may be softer. Some individual bursts have visible tails at gamma-ray energies and the spectrum in at least a few cases is different from that of the prompt emission. Afterglow at lower energies was detected for one of these bursts, GRB-991216, raising the possibility of afterglow observations over large energy ranges using the next generation of GRB detectors in conjunction with sensitive space or ground-based telescopes.

The Fusion of Membranes and Vesicles: Pathway and Energy Barriers from Dissipative Particle Dynamics

PubMed Central

Grafmüller, Andrea; Shillcock, Julian; Lipowsky, Reinhard

2009-01-01

The fusion of lipid bilayers is studied with dissipative particle dynamics simulations. First, to achieve control over membrane properties, the effects of individual simulation parameters are studied and optimized. Then, a large number of fusion events for a vesicle and a planar bilayer are simulated using the optimized parameter set. In the observed fusion pathway, configurations of individual lipids play an important role. Fusion starts with individual lipids assuming a splayed tail configuration with one tail inserted in each membrane. To determine the corresponding energy barrier, we measure the average work for interbilayer flips of a lipid tail, i.e., the average work to displace one lipid tail from one bilayer to the other. This energy barrier is found to depend strongly on a certain dissipative particle dynamics parameter, and, thus, can be adjusted in the simulations. Overall, three subprocesses have been identified in the fusion pathway. Their energy barriers are estimated to lie in the range 8–15 kBT. The fusion probability is found to possess a maximum at intermediate tension values. As one decreases the tension, the fusion probability seems to vanish before the tensionless membrane state is attained. This would imply that the tension has to exceed a certain threshold value to induce fusion. PMID:19348749

Intra-annual patterns in adult band-tailed pigeon survival estimates

USGS Publications Warehouse

Casazza, Michael L.; Coates, Peter S.; Overton, Cory T.; Howe, Kristy H.

2015-01-01

Implications: We present the first inter-seasonal analysis of survival probability of the Pacific coast race of band-tailed pigeons and illustrate important temporal patterns that may influence future species management including harvest strategies and disease monitoring.

Making Heads or Tails of Probability: An Experiment with Random Generators

ERIC Educational Resources Information Center

Morsanyi, Kinga; Handley, Simon J.; Serpell, Sylvie

2013-01-01

Background: The equiprobability bias is a tendency for individuals to think of probabilistic events as "equiprobable" by nature, and to judge outcomes that occur with different probabilities as equally likely. The equiprobability bias has been repeatedly found to be related to formal education in statistics, and it is claimed to be based…

A novel Coltivirus-related virus isolated from free-tailed bats from Côte d'Ivoire is able to infect human cells in vitro.

PubMed

Weiss, Sabrina; Dabrowski, Piotr Wojtek; Kurth, Andreas; Leendertz, Siv Aina J; Leendertz, Fabian H

2017-09-18

Zoonotic transmission events play a major role in the emergence of novel diseases. While such events are virtually impossible to predict, wildlife screening for potential emerging pathogens can be a first step. Driven by recent disease epidemics like severe acute respiratory syndrome (SARS), Middle East respiratory syndrome (MERS), and Ebola, bats have gained special interest as reservoirs of emerging viruses. As part of a bigger study investigating pathogens in African bats we screened animals for the presence of known and unknown viruses. We isolated and characterised a novel reovirus from blood of free-tailed bats (Chaereophon aloysiisabaudiae) captured in 2006 in Côte d'Ivoire. The virus showed closest relationship with two human pathogenic viruses, Colorado tick fever virus and Eyach virus, and was able to infect various human cell lines in vitro. The study shows the presence of a coltivirus-related virus in bats from Sub-Sahara Africa. Serological studies could help to assess its impact on humans or wildlife health.

Periodic substorm activity in the geomagnetic tail

NASA Technical Reports Server (NTRS)

Huang, C. Y.; Eastman, T. E.; Frank, L. A.; Williams, D. J.

1983-01-01

On 19 May 1978 an anusual series of events is observed with the Quadrispherical LEPEDEA on board the ISEE-1 satellite in the Earth's geomagnetic tail. For 13 hours periodic bursts of both ions and electrons are seen in all the particle detectors on the spacecraft. On this day periodic activity is also seen on the ground, where multiple intensifications of the electrojets are observed. At the same time the latitudinal component of the interplanetary magnetic field shows a number of strong southward deflections. It is concluded that an extended period of substorm activity is occurring, which causes repeated thinnings and recoveries of the plasma sheet. These are detected by ISEE, which is situated in the plasma sheet boundary layer, as periodic dropouts and reappearances of the plasma. Comparisons of the observations at ISEE with those at IMP-8, which for a time is engulfed by the plasma sheet, indicate that the activity is relatively localized in spatial extent. For this series of events it is clear that a global approach to magnetospheric dynamics, e.g., reconnection, is inappropriate.

The origin of bursts and heavy tails in human dynamics.

PubMed

Barabási, Albert-László

2005-05-12

The dynamics of many social, technological and economic phenomena are driven by individual human actions, turning the quantitative understanding of human behaviour into a central question of modern science. Current models of human dynamics, used from risk assessment to communications, assume that human actions are randomly distributed in time and thus well approximated by Poisson processes. In contrast, there is increasing evidence that the timing of many human activities, ranging from communication to entertainment and work patterns, follow non-Poisson statistics, characterized by bursts of rapidly occurring events separated by long periods of inactivity. Here I show that the bursty nature of human behaviour is a consequence of a decision-based queuing process: when individuals execute tasks based on some perceived priority, the timing of the tasks will be heavy tailed, with most tasks being rapidly executed, whereas a few experience very long waiting times. In contrast, random or priority blind execution is well approximated by uniform inter-event statistics. These finding have important implications, ranging from resource management to service allocation, in both communications and retail.

[Electron microscope analysis of cardiomyocytes in the rat left ventricle under simulation of weightlessness effects and artificial gravitation].

PubMed

Varenik, E N; Lipina, T V; Shornikova, M V; Krasnov, I B; Chentsov, Iu S

2012-01-01

Electron microscopic study of left ventricle cardiomyocytes and quantitative analysis of their mitochondriom was performed in rats exposed to tail-suspension, as a model of weightlessness effects, to artificial gravity produced by intermittent 2G centrifugation and a combination of these effects. It was found that the cardiomyocytes ultrastructure changed slightly after tail-suspension and after intermittent 2G influence, as well as under a combination of these effects. However, the number of intermitochondrial junctions increased significantly in the interfibrillar zone of cardiomyocytes under a combination of tail-suspension and intermittent 2G influence, which agrees with the cell hypertrophy described earlier.

Efficient degradation of Acid Orange 7 in aqueous solution by iron ore tailing Fenton-like process.

PubMed

Zheng, Jianming; Gao, Zhanqi; He, Huan; Yang, Shaogui; Sun, Cheng

2016-05-01

An effective method based on iron ore tailing Fenton-like process was studied for removing an azo dye, Acid Orange 7 (AO7) in aqueous solution. Five tailings were characterized by X-ray fluorescence spectroscope (XFS), Brunner-Emmet-Teller (BET) measurement, and Scanning Electron Microscope (SEM). The result of XFS showed that Fe, Si and Ca were the most abundant elements and some toxic heavy metals were also present in the studied tailings. The result of BET analysis indicated that the studied tailings had very low surface areas (0.64-5.68 m(2) g(-1)). The degradation efficiencies of AO7 were positively correlated with the content of iron oxide and cupric oxide, and not related with the BET surface area of the tailings. The co-existing metal elements, particularly Cu, might accelerate the heterogeneous Fenton-like reaction. The effects of other parameters on heterogeneous Fenton-like degradation of AO7 by a converter slag iron tailing (tailing E) which contains highest iron oxide were also investigated. The tailing could be reused 10 times without significant decrease of the catalytic capacity. Very low amount of iron species and almost undetectable toxic elements were leached in the catalytic degradation of AO7 by the tailing E. The reaction products were identified by gas chromatography-mass spectrometry and a possible pathway of AO7 degradation was proposed. This study not only provides an effective method for removing azo dyes in polluted water by employing waste tailings as Fenton-like catalysts, but also uses waste tailings as the secondary resource. Copyright © 2016 Elsevier Ltd. All rights reserved.

Bivariate drought frequency analysis using the copula method

NASA Astrophysics Data System (ADS)

Mirabbasi, Rasoul; Fakheri-Fard, Ahmad; Dinpashoh, Yagob

2012-04-01

Droughts are major natural hazards with significant environmental and economic impacts. In this study, two-dimensional copulas were applied to the analysis of the meteorological drought characteristics of the Sharafkhaneh gauge station, located in the northwest of Iran. Two major drought characteristics, duration and severity, as defined by the standardized precipitation index, were abstracted from observed drought events. Since drought duration and severity exhibited a significant correlation and since they were modeled using different distributions, copulas were used to construct the joint distribution function of the drought characteristics. The parameter of copulas was estimated using the method of the Inference Function for Margins. Several copulas were tested in order to determine the best data fit. According to the error analysis and the tail dependence coefficient, the Galambos copula provided the best fit for the observed drought data. Some bivariate probabilistic properties of droughts, based on the derived copula-based joint distribution, were also investigated. These probabilistic properties can provide useful information for water resource planning and management.

Optimization of digestion parameters for analysing the total sulphur of mine tailings by inductively coupled plasma optical emission spectrometry.

PubMed

Alam, Raquibul; Shang, Julie Q; Cheng, Xiangrong

2012-05-01

The oxidation of sulphidic mine tailings and consequent acid generation poses challenges for the environment. Accurate and precise analysis of sulphur content is necessary for impact assessment and management of mine tailings. Here, the authors aim at developing a rapid and easy digestion procedure, which may analyse and measure the total amount of sulphur in mine tailings by using inductively coupled plasma. For evaluating effects of several variables, the researchers used a univariate (analysis of variance (ANOVA)) strategy and considered factors such as composition of the acid mixture, heating time, and refluxing device to optimize the performance. To do the experiment, the researchers have used two certified reference materials (KZK-1 and RTS-2) and samples of tailings from Musselwhite mine. ANOVA result shows that heating time is the most influencing factor on acid digestion of the reference materials whereas in case of a digestion of tailings sample, hydrochloric acid proved to be the most significant parameter. Satisfactory results between the measured and referenced values are found for all experiments. It is found that the aqua regia (1 ml HNO(3) + 3 ml HCl) digestion of 0.1 g of samples after only 40 min of heating at 95°C produced fast, safe, and accurate analytical results with a recovery of 97% for the selected reference materials.

An analysis on 45° sweep tail angle for blended wing body aircraft to the aerodynamics coefficients by wind tunnel experiment

NASA Astrophysics Data System (ADS)

Latif, M. Z. A. Abd; Ahmad, M. A.; Nasir, R. E. Mohd; Wisnoe, W.; Saad, M. R.

2017-12-01

This paper presents the analysis of a model from UiTM Blended Wing Body (BWB) UAV, Baseline V that has been tested at UPNM high speed wind tunnel. Baseline V has a unique design due to different NACA sections used for its fuselage, body, wing root, midwing, wingtip, tail root, tail tip and the tail is swept 45° backward. The purpose of this experiment is to study the aerodynamic characteristics when the tail sweeps 45° backward. The experiments are conducted several times using 71.5% scaled down model at about 49.58 m/s airspeed or 25 Hz. The tail angle deflection is fixed and set at zero angle. All the data obtained is analyzed and presented in terms of coefficient of lift, coefficient of drag and also lift-to-drag ratio, and is plotted against various angles of attack. The angles of attack used for this experiments are between -10° to +30°. The blockage correction such as solid blockage, wake blockage and streamline curvature blockage are calculated in order to obtain true performance of the aircraft. From the observation, Baseline V shows that the aircraft tends to stall at around +15°. The maximum L/D ratio achieved for Baseline V is 20.8, however it decreases slightly to 20.7 after blockage corrections.

Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings.

PubMed

Chen, Lin-Xing; Li, Jin-Tian; Chen, Ya-Ting; Huang, Li-Nan; Hua, Zheng-Shuang; Hu, Min; Shu, Wen-Sheng

2013-09-01

In an attempt to link the microbial community composition and function in mine tailings to the generation of acid mine drainage, we simultaneously explored the geochemistry and microbiology of six tailings collected from a lead/zinc mine, i.e. primary tailings (T1), slightly acidic tailings (T2), extremely acidic tailings (T3, T4 and T5) and orange-coloured oxidized tailings (T6). Geochemical results showed that the six tailings (from T1 to T6) likely represented sequential stages of the acidification process of the mine tailings. 16S rRNA pyrosequencing revealed a contrasting microbial composition between the six tailings: Proteobacteria-related sequences dominated T1-T3 with relative abundance ranging from 56 to 93%, whereas Ferroplasma-related sequences dominated T4-T6 with relative abundance ranging from 28 to 58%. Furthermore, metagenomic analysis of the microbial communities of T2 and T6 indicated that the genes encoding key enzymes for microbial carbon fixation, nitrogen fixation and sulfur oxidation in T2 were largely from Thiobacillus and Acidithiobacillus, Methylococcus capsulatus, and Thiobacillus denitrificans respectively; while those in T6 were mostly identified in Acidithiobacillus and Leptospirillum, Acidithiobacillus and Leptospirillum, and Acidithiobacillus respectively. The microbial communities in T2 and T6 harboured more genes suggesting diverse metabolic capacities for sulfur oxidation/heavy metal detoxification and tolerating low pH respectively. © 2013 John Wiley & Sons Ltd and Society for Applied Microbiology.

High resolution flow field prediction for tail rotor aeroacoustics

NASA Technical Reports Server (NTRS)

Quackenbush, Todd R.; Bliss, Donald B.

1989-01-01

The prediction of tail rotor noise due to the impingement of the main rotor wake poses a significant challenge to current analysis methods in rotorcraft aeroacoustics. This paper describes the development of a new treatment of the tail rotor aerodynamic environment that permits highly accurate resolution of the incident flow field with modest computational effort relative to alternative models. The new approach incorporates an advanced full-span free wake model of the main rotor in a scheme which reconstructs high-resolution flow solutions from preliminary, computationally inexpensive simulations with coarse resolution. The heart of the approach is a novel method for using local velocity correction terms to capture the steep velocity gradients characteristic of the vortex-dominated incident flow. Sample calculations have been undertaken to examine the principal types of interactions between the tail rotor and the main rotor wake and to examine the performance of the new method. The results of these sample problems confirm the success of this approach in capturing the high-resolution flows necessary for analysis of rotor-wake/rotor interactions with dramatically reduced computational cost. Computations of radiated sound are also carried out that explore the role of various portions of the main rotor wake in generating tail rotor noise.

Sulfide tails management within the framework of sustainable development in mineral sand mines--the case study of Sierra Rutile Ltd.

PubMed

Kallon, Senesie B; Jabati, Ansu M; Samura, Alusine

2011-01-01

The study discussed here assessed Sierra Rutile Ltd.'s (SRLs) water-cover sulfide tails management method. Monthly and quarterly water samples from SRLs Sulfide Tails Pond (STP), Total Tails Pond (TTP), and the Titan Domestic Pond (TDP) were analyzed for 15 months. Results indicated acceptable quality for the STP. From Student's t-test analysis, it was found that the mean pH of the TTP was significantly lower than that of the TDP (p < .05). Results did not indicate pollution of the TDP by SRLs tailings management. The water-cover method significantly suppressed sulfide oxidation in the STP. Concerns to be addressed, however, include potential overtopping of the pond, water level fluctuations, and the need for periodic reinforcement of the tailings embankments. A dedicated environmental monitoring campaign that includes other proximate water bodies is suggested; this should inform timely mitigation of any environmental contamination and promote sound environmental and public health outcomes.

The Rotational Properties of Multi-tailed Asteroid P/2013 P5

NASA Astrophysics Data System (ADS)

Gustafsson, Annika; Moskovitz, Nicholas; Levine, Stephen

2014-11-01

To date, there are twelve known celestial bodies in the Solar System, labeled Main Belt Comets (e.g. Hsieh & Jewitt, 2006) or Active Asteroids (Jewitt, 2012) that exhibit both asteroid and comet-like properties. Among them is P/2013 P5, a comet-asteroid transition object discovered by PAN-STARRS in August 2013. Observations made with the Hubble Space Telescope in September 2013 revealed that P/2013 P5 appears to have six comet-like dust tails. Jewitt et al. (2013) concluded that this extraordinary structure and activity cannot be explained by traditional near-surface ice sublimation or collision events ejecting particles from the asteroid’s surface. Instead, the most likely explanation is that this unusual object has been spun-up by YORP torques to a critical limit that has resulted in the rotational disruption of the asteroid causing the unique six-tail structure. This interpretation predicts that the nucleus of this comet-like asteroid should be in rapid rotation. In November 2013, broadband photometry of P/2013 P5 was obtained with Lowell Observatory’s 4-meter Discovery Channel Telescope using the Large Monolithic Imager to investigate the possibility of rapid rotation. On chip optimal aperture photometry was performed on P/2013 P5. At an apparent magnitude V=22.5 magnitude, we found no significant variability in the light curve at the level of 0.15 magnitudes. General morphology changes in the nucleus-coma system of the asteroid were also investigated. We will present our analysis of this search for variability in both time and spatially across the coma relative to the object’s center of brightness. Hsieh, H. H., & Jewitt, D. 2006, Science, 312, 561Jewitt, D. 2012, AJ, 143, 66Jewitt, D.C., Agarwal, J., Weaver, H., Mutchler, M., & Larson, S. 2013, ApL, 778

Selection and geographic isolation influence hummingbird speciation: genetic, acoustic and morphological divergence in the wedge-tailed sabrewing (Campylopterus curvipennis).

PubMed

González, Clementina; Ornelas, Juan Francisco; Gutiérrez-Rodríguez, Carla

2011-02-08

Mesoamerica is one of the most threatened biodiversity hotspots in the world, yet we are far from understanding the geologic history and the processes driving population divergence and speciation for most endemic taxa. In species with highly differentiated populations selective and/or neutral factors can induce rapid changes to traits involved in mate choice, promoting reproductive isolation between allopatric populations that can eventually lead to speciation. We present the results of genetic differentiation, and explore drift and selection effects in promoting acoustic and morphological divergence among populations of Campylopterus curvipennis, a lekking hummingbird with an extraordinary vocal variability across Mesoamerica. Analyses of two mitochondrial genes and ten microsatellite loci genotyped for 160 individuals revealed the presence of three lineages with no contemporary gene flow: C. c. curvipennis, C. c. excellens, and C. c. pampa disjunctly distributed in the Sierra Madre Oriental, the Tuxtlas region and the Yucatan Peninsula, respectively. Sequence mtDNA and microsatellite data were congruent with two diversification events: an old vicariance event at the Isthmus of Tehuantepec (c. 1.4 Ma), and a more recent Pleistocene split, isolating populations in the Tuxtlas region. Hummingbirds of the excellens group were larger, and those of the pampa group had shorter bills, and lineages that have been isolated the longest shared fewer syllables and differed in spectral and temporal traits of a shared syllable. Coalescent simulations showed that fixation of song types has occurred faster than expected under neutrality but the null hypothesis that morphological divergence resulted from drift was not rejected. Our phylogeographic analyses uncovered the presence of three Mesoamerican wedge-tailed sabrewing lineages, which diverged at different time scales. These results highlight the importance of the Isthmus of Tehuantepec and more recent Pleistocene climatic events in driving isolation and population divergence. Coalescent analyses of the evolution of phenotypic traits suggest that selection is driving song evolution in wedge-tailed sabrewings but drift could not be rejected as a possibility for morphological divergence.

Forensic species identification of elephant (Elephantidae) and giraffe (Giraffidae) tail hair using light microscopy.

PubMed

Yates, Bonnie C; Espinoza, Edgard O; Baker, Barry W

2010-09-01

Here we present methods for distinguishing tail hairs of African elephants (Loxodonta africana), Asian elephants (Elephas maximus), and giraffes (Giraffa camelopardalis) from forensic contexts. Such hairs are commonly used to manufacture jewelry artifacts that are often sold illegally in the international wildlife trade. Tail hairs from these three species are easily confused macroscopically, and morphological methods for distinguishing African and Asian tail hairs have not been published. We used cross section analysis and light microscopy to analyze the tail hair morphology of 18 individual African elephants, 18 Asian elephants, and 40 giraffes. We found that cross-sectional shape, pigment placement, and pigment density are useful morphological features for distinguishing the three species. These observations provide wildlife forensic scientists with an important analytical tool for enforcing legislation and international treaties regulating the trade in elephant parts.

Data-driven quantification of the effect of wind on athletics performance.

PubMed

Moinat, M; Fabius, O; Emanuel, K S

2018-06-11

So far, the relationship between wind and athletics performance has been studied mainly for 100 m sprint, based on simulation of biomechanical models, requiring several assumptions. In this study, this relationship is quantified empirically for all five horizontal jump and sprint events where wind is measured, with freely available competition results. After systematic scraping several elite and sub-elite results sites, the obtained results (n = 150,169) were filtered and matched to athletes. A quadratic mixed effects model with athlete and season as random effects was applied to express the influence of wind velocity on performance in each event. Whether this effect differs with performance level was investigated by applying the model on subgroups based on performance level. In the fitted quadratic model, the linear coefficients were significant (p < .001) for all events; the quadratic coefficients were significant for all events (p < .001) except long jump (p = .138). A 2.0 m s -1 tail wind provides an average advantage of 0.125, 0.140 and 0.146-s for the 100, 200 and 100/110 m hurdles, respectively, and an advantage of 0.058 and 0.102 m for long jump and triple jump, respectively. Performance level had a significant effect on the wind influence only for 100 m (p < .001). Amateur athletes (∼13 s) benefit 69% more from a 2.0 m s -1 tail wind than elite athletes (∼10 s). Practical formulas are presented for each event. These can easily be used correct results for wind speed, allowing better talent scouting and championship selection. This study demonstrates the efficacy of answering scientific questions empirically, through freely available data.

Outliers and Extremes: Dragon-Kings or Dragon-Fools?

NASA Astrophysics Data System (ADS)

Schertzer, D. J.; Tchiguirinskaia, I.; Lovejoy, S.

2012-12-01

Geophysics seems full of monsters like Victor Hugo's Court of Miracles and monstrous extremes have been statistically considered as outliers with respect to more normal events. However, a characteristic magnitude separating abnormal events from normal ones would be at odd with the generic scaling behaviour of nonlinear systems, contrary to "fat tailed" probability distributions and self-organized criticality. More precisely, it can be shown [1] how the apparent monsters could be mere manifestations of a singular measure mishandled as a regular measure. Monstrous fluctuations are the rule, not outliers and they are more frequent than usually thought up to the point that (theoretical) statistical moments can easily be infinite. The empirical estimates of the latter are erratic and diverge with sample size. The corresponding physics is that intense small scale events cannot be smoothed out by upscaling. However, based on a few examples, it has also been argued [2] that one should consider "genuine" outliers of fat tailed distributions so monstrous that they can be called "dragon-kings". We critically analyse these arguments, e.g. finite sample size and statistical estimates of the largest events, multifractal phase transition vs. more classical phase transition. We emphasize the fact that dragon-kings are not needed in order that the largest events become predictable. This is rather reminiscent of the Feast of Fools picturesquely described by Victor Hugo. [1] D. Schertzer, I. Tchiguirinskaia, S. Lovejoy et P. Hubert (2010): No monsters, no miracles: in nonlinear sciences hydrology is not an outlier! Hydrological Sciences Journal, 55 (6) 965 - 979. [2] D. Sornette (2009): Dragon-Kings, Black Swans and the Prediction of Crises. International Journal of Terraspace Science and Engineering 1(3), 1-17.

Multivariate statistical characterization of charged and uncharged domain walls in multiferroic hexagonal YMnO3 single crystal visualized by a spherical aberration-corrected STEM.

PubMed

Matsumoto, Takao; Ishikawa, Ryo; Tohei, Tetsuya; Kimura, Hideo; Yao, Qiwen; Zhao, Hongyang; Wang, Xiaolin; Chen, Dapeng; Cheng, Zhenxiang; Shibata, Naoya; Ikuhara, Yuichi

2013-10-09

A state-of-the-art spherical aberration-corrected STEM was fully utilized to directly visualize the multiferroic domain structure in a hexagonal YMnO3 single crystal at atomic scale. With the aid of multivariate statistical analysis (MSA), we obtained unbiased and quantitative maps of ferroelectric domain structures with atomic resolution. Such a statistical image analysis of the transition region between opposite polarizations has confirmed atomically sharp transitions of ferroelectric polarization both in antiparallel (uncharged) and tail-to-tail 180° (charged) domain boundaries. Through the analysis, a correlated subatomic image shift of Mn-O layers with that of Y layers, exhibiting a double-arc shape of reversed curvatures, have been elucidated. The amount of image shift in Mn-O layers along the c-axis is statistically significant as small as 0.016 nm, roughly one-third of the evident image shift of 0.048 nm in Y layers. Interestingly, a careful analysis has shown that such a subatomic image shift in Mn-O layers vanishes at the tail-to-tail 180° domain boundaries. Furthermore, taking advantage of the annular bright field (ABF) imaging technique combined with MSA, the tilting of MnO5 bipyramids, the very core mechanism of multiferroicity of the material, is evaluated.

Pongamia pinnata inoculated with Bradyrhizobium liaoningense PZHK1 shows potential for phytoremediation of mine tailings.

PubMed

Yu, Xiumei; Li, Yangxin; Li, Yanmei; Xu, Chaohua; Cui, Yongliang; Xiang, Quanju; Gu, Yunfu; Zhao, Ke; Zhang, Xiaoping; Penttinen, Petri; Chen, Qiang

2017-02-01

Mine tailings contain high concentrations of metal contaminants and only little nutrients, making the tailings barren for decades after the mining has been terminated. Effective phytoremediation of mine tailings calls for deep-rooted, metal accumulating, and soil fertility increasing plants with tolerance against harsh environmental conditions. We assessed the potential of the biofuel leguminous tree Pongamia pinnata inoculated with plant growth promoting rhizobia to remediate iron-vanadium-titanium oxide (V-Ti magnetite) mine tailing soil by pot experiment and in situ remediation test. A metal tolerant rhizobia strain PZHK1 was isolated from the tailing soil and identified as Bradyrhizobium liaoningense by phylogenetic analysis. Inoculation with PZHK1 increased the growth of P. pinnata both in V-Ti magnetite mine tailings and in Ni-contaminated soil. Furthermore, inoculation increased the metal accumulation capacity and superoxide dismutase activity of P. pinnata. The concentrations of Ni accumulated by inoculated plants were higher than the hyperaccumulator threshold. Inoculated P. pinnata accumulated high concentration of Fe, far exceeding the upper limit (1000 mg kg -1 ) of Fe in plant tissue. In summary, P. pinnata-B. liaoningense PZHK1 symbiosis showed potential to be applied as an effective phytoremediation technology for mine tailings and to produce biofuel feedstock on the marginal land.

Fleet Sizing Analysis Methodologies for the Royal Australian Navy’s Combat Helicopter Replacement Project

DTIC Science & Technology

2013-08-01

Organisation 506 Lorimer St Fishermans Bend, Victoria 3207 Australia Telephone: 1300 DEFENCE (1300 333 363) Fax: (03) 9626 7999 © Commonwealth of...tails can become ‘hangar queens ’: i.e., tails that have achieved their hours and have been awaiting maintenance for a long time. These tails are...Organisation 506 Lorimer St Fishermans Bend Victoria 3207 Australia 6a. DSTO NUMBER DSTO-TR-2886 6b. AR NUMBER AR-015-695 6c. TYPE OF REPORT

Analysis the Purposes of Land Use Planning on the Hard Coal Tailing Dumps

NASA Astrophysics Data System (ADS)

Zástĕrová, Petra; Niemiec, Dominik; Marschalko, Marian; Durd'ák, Jan; Duraj, Miloš; Yilmaz, Işik; Drusa, Marian

2016-10-01

The aim of this publication is to analyse the purposes of land use planning on hard coal tailing dumps. This issue is very topical because there are 46 tailing dumps and 281 reservoirs in the Ostrava-Karvina Mining District. They significantly affect the landscape of this region. A major problem is solving problems of reclamation of these geological environment. This means that it is necessary to think about it and start to solve it. It is clear that such reclamation is not simple both economic as well as environmental point of view. It is necessary to think carefully about what purpose would be tailing dump or reservoirs to utilize in a given location.

Computational Investigation and Validation of Twin-Tail Buffet Response Including Dynamics and Control

NASA Technical Reports Server (NTRS)

Kandil, Osama A.

1998-01-01

Multidisciplinary tools for prediction of single rectangular-tail buffet are extended to single swept-back-tail buffet in transonic-speed flow, and multidisciplinary tools for prediction and control of twin-tail buffet are developed and presented. The configuration model consists of a sharp-edged delta wing with single or twin tails that are oriented normal to the wing surface. The tails are treated as cantilevered beams fixed at the root and allowed to oscillate in both bending and torsion. This complex multidisciplinary problem is solved sequentially using three sets of equations on a dynamic single or multi-block grid structure. The first set is the unsteady, compressible, Reynolds-averaged Navier-Stokes equations which are used for obtaining the flow field vector and the aerodynamic loads on the tails. The Navier-Stokes equations are solved accurately in time using the implicit, upwind, flux-difference splitting, finite volume scheme. The second set is the coupled bending and torsion aeroelastic equations of cantilevered beams which are used for obtaining the bending and torsion deflections of the tails. The aeroelastic equations'are solved accurately in time using, a fifth-order-accurate Runge-Kutta scheme. The third set is the grid-displacement equations and the rigid-body dynamics equations, which are used for updating the grid coordinates due to the tail deflections and rigid-body motions. The tail-buffet phenomenon is predicted for highly-swept, single vertical tail placed at the plane of geometric symmetry, and for highly-swept, vertical twin tails placed at three different spanwise separation distances. The investigation demonstrates the effects of structural inertial coupling and uncoupling of the bending and torsion modes of vibration, spanwise positions of the twin-tail, angle of attack, and pitching and rolling dynamic motions of the configuration model on the tail buffet loading and response. The fundamental issue of twin-tail buffet alleviation is addressed using two active flow-control methods. These methods are the tangential leading-edge blowing and the flow suction from the leading-edge vortex cores along their paths. Qualitative and quantitative comparisons with the available experimental data are presented. The comparisons indicate that the present multidisciplinary aeroelastic analysis tools are robust, accurate and efficient.

Tilt changes of short duration

USGS Publications Warehouse

McHugh, Stuart

1976-01-01

Section I of this report contains a classification scheme for short period tilt data. For convenience, all fluctuations in the local tilt field of less than 24 hours duration will be designated SP (i.e., short period) tilt events. Three basic categories of waveshape appearance are defined, and the rules for naming the waveforms are outlined. Examples from tilt observations at four central California sites are provided. Section II contains some coseismic tilt data. Fourteen earthquakes in central California, ranging in magnitude from 2.9 to 5.2, were chosen for study on four tiltmeters within 10 source dimensions of the epicenters. The raw records from each of the four tiltmeters at the times of the earthquakes were photographed and are presented in this section. Section III contains documentation of computer programs used in the analysis of the short period tilt data. Program VECTOR computes the difference vector of a tilt event and displays the sequence of events as a head-to-tail vector plot. Program ONSTSP 1) requires two component digitized tilt data as input, 2) scales and plots the data, and 3) computes and displays the amplitude, azimuth, and normalized derivative of the tilt amplitude. Program SHARPS computes the onset sharpness, (i.e., the normalized derivative of the tilt amplitude at the onset of the tilt event) as a function of source-station distance from a model of creep-related tilt changes. Program DSPLAY plots the digitized data.

New FIGO and Swedish intrapartum cardiotocography classification systems incorporated in the fetal ECG ST analysis (STAN) interpretation algorithm: agreements and discrepancies in cardiotocography classification and evaluation of significant ST events.

PubMed

Olofsson, Per; Norén, Håkan; Carlsson, Ann

2018-02-01

The updated intrapartum cardiotocography (CTG) classification system by FIGO in 2015 (FIGO2015) and the FIGO2015-approached classification by the Swedish Society of Obstetricians and Gynecologist in 2017 (SSOG2017) are not harmonized with the fetal ECG ST analysis (STAN) algorithm from 2007 (STAN2007). The study aimed to reveal homogeneity and agreement between the systems in classifying CTG and ST events, and relate them to maternal and perinatal outcomes. Among CTG traces with ST events, 100 traces originally classified as normal, 100 as suspicious and 100 as pathological were randomly selected from a STAN database and classified by two experts in consensus. Homogeneity and agreement statistics between the CTG classifications were performed. Maternal and perinatal outcomes were evaluated in cases with clinically hidden ST data (n = 151). A two-tailed p < 0.05 was regarded as significant. For CTG classes, the heterogeneity was significant between the old and new systems, and agreements were moderate to strong (proportion of agreement, kappa index 0.70-0.86). Between the new classifications, heterogeneity was significant and agreements strong (0.90, 0.92). For significant ST events, heterogeneities were significant and agreements moderate to almost perfect (STAN2007 vs. FIGO2015 0.86, 0.72; STAN2007 vs. SSOG2017 0.92, 0.84; FIGO2015 vs. SSOG2017 0.94, 0.87). Significant ST events occurred more often combined with STAN2007 than with FIGO2015 classification, but not with SSOG2017; correct identification of adverse outcomes was not significantly different between the systems. There are discrepancies in the classification of CTG patterns and significant ST events between the old and new systems. The clinical relevance of the findings remains to be shown. © 2017 The Authors. Acta Obstetricia et Gynecologica Scandinavica published by John Wiley & Sons Ltd on behalf of Nordic Federation of Societies of Obstetrics and Gynecology (NFOG).

Extreme events and natural hazards: The complexity perspective

NASA Astrophysics Data System (ADS)

Schultz, Colin

2012-10-01

Advanced societies have become quite proficient at defending against moderate-size earthquakes, hurricanes, floods, or other natural assaults. What still pose a significant threat, however, are the unknowns, the extremes, the natural phenomena encompassed by the upper tail of the probability distribution. Alongside the large or powerful events, truly extreme natural disasters are those that tie different systems together: an earthquake that causes a tsunami, which leads to flooding, which takes down a nuclear reactor. In the geophysical monograph Extreme Events and Natural Hazards: The Complexity Perspective, editors A. Surjalal Sharma, Armin Bunde, Vijay P. Dimro, and Daniel N. Baker present a lens through which such multidisciplinary phenomena can be understood. In this interview, Eos talks to Sharma about complexity science, predicting extreme events and natural hazards, and the push for "big data."

Mercury and gold concentrations of highly polluted environmental samples determined using prompt gamma-ray analysis and instrument neutron activation analysis

NASA Astrophysics Data System (ADS)

Osawa, Takahito; Hatsukawa, Yuichi; Appel, Peter W. U.; Matsue, Hideaki

2011-04-01

The authors have established a method of determining mercury and gold in severely polluted environmental samples using prompt gamma-ray analysis (PGA) and instrumental neutron activation analysis (INAA). Since large amounts of mercury are constantly being released into the environment by small-scale gold mining in many developing countries, the mercury concentration in tailings and water has to be determined to mitigate environmental pollution. Cold-vapor atomic absorption analysis, the most pervasive method of mercury analysis, is not suitable because tailings and water around mining facilities have extremely high mercury concentrations. On the other hand, PGA can determine high mercury concentrations in polluted samples as it has an appropriate level of sensitivity. Moreover, gold concentrations can be determined sequentially by using INAA after PGA. In conclusion, the analytical procedure established in this work using PGA and INAA is the best way to evaluate the degree of pollution and the tailing resource value. This method will significantly contribute to mitigating problems in the global environment.

Supply chain analysis of e-tailing versus retailing operation - a case study

NASA Astrophysics Data System (ADS)

Kumar, Sameer; Tiffany, Maryellen; Vaidya, Salil

2016-07-01

The swift growth of e-commerce or e-tailing as a consumer retail channel has made it a serious competitor to traditional retail channels and is changing consumers' purchasing behaviour. The purpose of this case study, based on Target and Amazon.com, is to analyse the attributes of traditional retailing, e-tailing, and hybrid supply chain models to form conclusions about the feasibility of an idealised supply chain model for the future. An integrated and generalised modelling framework is used that incorporates Six Sigma - define, measure, analyse, improve, control methodology leveraging various tools, including process flow maps, cause and effect diagram, performance efficiency metrics, failure mode and effects analysis (FMEA), and Monte Carlo simulation. Based on this analysis and research, the conclusion is that the idealised supply chain of the future may evolve into a hybrid supply chain, which includes both e-tail and retail channels. The main recommendations from this study include assessing the risks of migrating to such a hybrid supply chain and to leverage the recommended actions provided in the hybrid FMEA. To facilitate more effective and mature processes, this study can guide researchers in exhaustive empirical evaluations of hybrid supply chains, gather experiences and lessons learned for practitioners.

Detection of irradiated quail meat by using DNA comet assay and evaluation of comets by image analysis

NASA Astrophysics Data System (ADS)

Erel, Yakup; Yazici, Nizamettin; Özvatan, Sumer; Ercin, Demet; Cetinkaya, Nurcan

2009-09-01

A simple technique of microgel electrophoresis of single cells (DNA comet assay) was used to detect DNA comets in irradiated quail meat samples. Obtained DNA comets were evaluated by both photomicrographic and image analysis. Quail meat samples were exposed to radiation doses of 0.52, 1.05, 1.45, 2.00, 2.92 and 4.00 kGy in gamma cell (gammacell 60Co, dose rate 1.31 kGy/h) covering the permissible limits for enzymatic decay and stored at 2 °C. The cells isolated from muscle (chest, thorax) in cold PBS were analyzed using the DNA comet assay on 1, 2, 3, 4, 7, 8 and 11 day post irradiation. The cells were lysed between 2, 5 and 9 min in 2.5% SDS and electrophorosis was carried out at a voltage of 2 V/cm for 2 min. After propidium iodide staining, the slides were evaluated through a fluorescent microscope. In all irradiated samples, fragmented DNA stretched towards the anode and damaged cells appeared as a comet. All measurement data were analyzed using BS 200 ProP with software image analysis (BS 200 ProP, BAB Imaging System, Ankara, Turkey). The density of DNA in the tails increased with increasing radiation dose. However, in non-irradiated samples, the large molecules of DNA remained relatively intact and there was only minor or no migration of DNA; the cells were round or had very short tails only. The values of tail DNA%, tail length and tail moment were significantly different and identical between 0.9 and 4.0 kGy dose exposure, and also among storage times on day 1, 4 and 8. In conclusion, the DNA Comet Assay EN 13784 standard method may be used not only for screening method for detection of irradiated quail meat depending on storage time and condition but also for the quantification of applied dose if it is combined with image analysis. Image analysis may provide a powerful tool for the evaluation of head and tail of comet intensity related with applied doses.

Windblown Dust Deposition Forecasting and Spread of Contamination around Mine Tailings.

PubMed

Stovern, Michael; Guzmán, Héctor; Rine, Kyle P; Felix, Omar; King, Matthew; Ela, Wendell P; Betterton, Eric A; Sáez, Avelino Eduardo

2016-02-01

Wind erosion, transport and deposition of windblown dust from anthropogenic sources, such as mine tailings impoundments, can have significant effects on the surrounding environment. The lack of vegetation and the vertical protrusion of the mine tailings above the neighboring terrain make the tailings susceptible to wind erosion. Modeling the erosion, transport and deposition of particulate matter from mine tailings is a challenge for many reasons, including heterogeneity of the soil surface, vegetative canopy coverage, dynamic meteorological conditions and topographic influences. In this work, a previously developed Deposition Forecasting Model (DFM) that is specifically designed to model the transport of particulate matter from mine tailings impoundments is verified using dust collection and topsoil measurements. The DFM is initialized using data from an operational Weather Research and Forecasting (WRF) model. The forecast deposition patterns are compared to dust collected by inverted-disc samplers and determined through gravimetric, chemical composition and lead isotopic analysis. The DFM is capable of predicting dust deposition patterns from the tailings impoundment to the surrounding area. The methodology and approach employed in this work can be generalized to other contaminated sites from which dust transport to the local environment can be assessed as a potential route for human exposure.

Windblown Dust Deposition Forecasting and Spread of Contamination around Mine Tailings

PubMed Central

Stovern, Michael; Guzmán, Héctor; Rine, Kyle P.; Felix, Omar; King, Matthew; Ela, Wendell P.; Betterton, Eric A.; Sáez, Avelino Eduardo

2017-01-01

Wind erosion, transport and deposition of windblown dust from anthropogenic sources, such as mine tailings impoundments, can have significant effects on the surrounding environment. The lack of vegetation and the vertical protrusion of the mine tailings above the neighboring terrain make the tailings susceptible to wind erosion. Modeling the erosion, transport and deposition of particulate matter from mine tailings is a challenge for many reasons, including heterogeneity of the soil surface, vegetative canopy coverage, dynamic meteorological conditions and topographic influences. In this work, a previously developed Deposition Forecasting Model (DFM) that is specifically designed to model the transport of particulate matter from mine tailings impoundments is verified using dust collection and topsoil measurements. The DFM is initialized using data from an operational Weather Research and Forecasting (WRF) model. The forecast deposition patterns are compared to dust collected by inverted-disc samplers and determined through gravimetric, chemical composition and lead isotopic analysis. The DFM is capable of predicting dust deposition patterns from the tailings impoundment to the surrounding area. The methodology and approach employed in this work can be generalized to other contaminated sites from which dust transport to the local environment can be assessed as a potential route for human exposure. PMID:29082035

Metals uptake and health risks associated with cattle grazing on mine tailings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsuji, J.S.

1994-12-31

Cattle are used at a site in Arizona to revegetate mine tailings dams by dispersing seeds and adding fertilizer with their manure. Although this program has been successful in revegetating the slopes, the residual metals in the tailings may potentially be accumulated by the cattle. Using US EPA guidelines on indirect exposure pathways and data on metals in tailings and in grasses, exposure and tissue levels of metals were calculated to assess health threats to the cattle or to those consuming the beef. Lead in the tailings and cadmium in tailings and grasses were selected for detailed exposure analysis viamore » ingestion of tailings and grasses by grazing cattle. Predicted exposures to cattle were below levels resulting in toxic effects to livestock. Estimated human exposures were below the EPA reference dose for cadmium even for a 15 kg child consuming beef or beef liver. Similarly, estimated tissue levels of lead were within reported background dietary levels of lead in beef and kidney. Necropsies of four newborn calves found no evidence of metal toxicity, but possible copper and selenium deficiencies combined with viral infection. Similarly, blood samples from pregnant cattle had non-detectable levels of lead, arsenic, and cadmium.« less

Persistence of exponential bed thickness distributions in the stratigraphic record: Experiments and theory

NASA Astrophysics Data System (ADS)

Straub, K. M.; Ganti, V. K.; Paola, C.; Foufoula-Georgiou, E.

2010-12-01

Stratigraphy preserved in alluvial basins houses the most complete record of information necessary to reconstruct past environmental conditions. Indeed, the character of the sedimentary record is inextricably related to the surface processes that formed it. In this presentation we explore how the signals of surface processes are recorded in stratigraphy through the use of physical and numerical experiments. We focus on linking surface processes to stratigraphy in 1D by quantifying the probability distributions of processes that govern the evolution of depositional systems to the probability distribution of preserved bed thicknesses. In this study we define a bed as a package of sediment bounded above and below by erosional surfaces. In a companion presentation we document heavy-tailed statistics of erosion and deposition from high-resolution temporal elevation data recorded during a controlled physical experiment. However, the heavy tails in the magnitudes of erosional and depositional events are not preserved in the experimental stratigraphy. Similar to many bed thickness distributions reported in field studies we find that an exponential distribution adequately describes the thicknesses of beds preserved in our experiment. We explore the generation of exponential bed thickness distributions from heavy-tailed surface statistics using 1D numerical models. These models indicate that when the full distribution of elevation fluctuations (both erosional and depositional events) is symmetrical, the resulting distribution of bed thicknesses is exponential in form. Finally, we illustrate that a predictable relationship exists between the coefficient of variation of surface elevation fluctuations and the scale-parameter of the resulting exponential distribution of bed thicknesses.

Survival of Flux Transfer Event (FTE) Flux Ropes Far Along the Tail Magnetopause

NASA Technical Reports Server (NTRS)

Eastwood, J. P.; Phan, T. D.; Fear, R. C.; Sibeck, D. G.; Angelopoulos, V.; Oieroset, M.; Shay, M. A.

2012-01-01

During intervals of southward IMF, magnetic reconnection can result in the formation of flux transfer events (FTEs) on the dayside magnetopause which travel along the magnetopause in the anti-sunward direction. Of particular interest is their fate and the role they play transporting solar wind plasma into the magnetosphere. We present the discovery of FTEs far along the distant tail magnetopause (x = 67 Earth radii) using data from ARTEMIS on the dusk flank magnetopause under southward/duskward IMF conditions. The identification of several events is further supported by excellent fits to a force-free flux rope model. The axis of each structure is principally north-south, i.e., perpendicular to the Sun-Earth line. Simultaneous observations by THEMIS on the dayside magnetopause indicate that FTEs are being produced there, although perhaps 2-4 times smaller in size. The convection time from the dayside magnetopause to ARTEMIS is 30 min, and the FTEs have a flux content comparable to those typically observed on the dayside magnetopause, indicating that these features are in quasi-equilibrium as they are convected downtail. By considering the relative orientations of the FTEs observed by THEMIS and ARTEMIS, the magnetic field geometry is consistent with the FTEs being produced on the dayside magnetopause along an extended X-line in the presence of IMF By and bending as they are convected to the flanks.

Open and disconnected magnetic field lines within coronal mass ejections in the solar wind: Evidence for 3-dimensional reconnection

NASA Technical Reports Server (NTRS)

Gosling, J. T.; Birn, J.; McComas, D. J.; Phillips, J. L.; Hesse, M.

1995-01-01

Measurements of suprathermal electron fluxes in the solar wind at energies greater than approximatley 80 eV indicate that magnetic field lines within coronal mass ejections. CMEs, near and beyond 1 AU are normally connected to the Sun at both ends. However, a preliminary reexamination of events previously identified as CMEs in the ISEE 3 data reveals that about 1/4 of all such events contain limited regions where field lines appear to be either connected to the Sun at only one end or connected to the outer heliosphere at both ends. Similar intervals of open and disconnected field lines within CMEs have been identified in the Ulysses observations. We believe that these anomalous field topologies within CMEs are most naturally interpreted in terms of 3-dimensional reconnection behind CMEs close to the Sun. Such reconnection also provides a natural explanation both for the flux rope topology of many CMEs as well as the coronal loops formed during long-duration solar soft X ray events. Although detailed numerical simulations of 3-dimensional reconnection behind CMEs are not yet available, such simulations have been done for the qualitatively similar geometry that prevails within the geomagnetic tail. Those simulations of plasmoid formation in the geomagnetic tail do produce the mixture of field topologies within plasmoids discussed here for CMEs.

Near-infrared to Mid-infrared Observations of Galaxy Mergers: NGC 2782 and NGC 7727

NASA Astrophysics Data System (ADS)

Onaka, Takashi; Nakamura, Tomohiko; Sakon, Itsuki; Wu, Ronin; Ohsawa, Ryou; Kaneda, Hidehiro; Lebouteiller, Vianney; Roellig, Thomas L.

2018-01-01

We present the results of near-infrared-to-mid-infrared (NIR-to-MIR) imaging and NIR spectroscopic observations of two galaxy mergers, NGC 2782 (Arp 215) and NGC 7727 (Arp 222), with the Infrared Camera on board AKARI. NGC 2782 shows extended MIR emission in the eastern side of the galaxy, which corresponds to the eastern tidal tail seen in the H I 21 cm map, while NGC 7727 shows extended MIR emission in the north of the galaxy, which is similar to the plumes seen in the residual image at the K-band after subtracting a galaxy model. Both extended structures are thought to have formed in association with their merger events. They show excess emission at 7–15 μm, which can be attributed to emission from polycyclic aromatic hydrocarbons (PAHs), while the observed spectral energy distributions (SEDs) decline longward of 24 μm, suggesting that very small grains (VSGs) are deficient. These characteristics of the observed MIR SED may be explained if PAHs are formed by fragmentation of VSGs during merger events. The star formation rate is estimated from the MIR PAH emission in the eastern tail region of NGC 2782 and it is in fair agreement with those estimated from Hα and [C II] 158 μm. MIR observations are efficient for the study of dust processing and structures formed during merger events.

Parameters: The US Army War College Quarterly. Volume 43, Number 4, Winter 2013-14

DTIC Science & Technology

2014-01-01

papers.ssrn.com/ sol3/papers.cfm?abstract_id=2175056 80 Parameters 43(4) Winter 2013-14 distributions ( fat -tailed events) and accordingly are...these nuggets of information appear as appended to the ends of paragraphs and sections, almost as if bolted on as an afterthought. This is a shame

Ticks on Deer and Cattle in the Cattle Fever Tick Permanent Quarantine Zone, 2012

USDA-ARS?s Scientific Manuscript database

Ticks were sampled from hosts in the cattle fever tick permanent quarantine zone along the Texas-Mexico border on five occasions in 2012. Three sample events involved white-tailed deer populations in Zapata and Starr Counties and two were from a cattle herd in Kinney County. Six species of ticks (n ...

A simple bias correction in linear regression for quantitative trait association under two-tail extreme selection.

PubMed

Kwan, Johnny S H; Kung, Annie W C; Sham, Pak C

2011-09-01

Selective genotyping can increase power in quantitative trait association. One example of selective genotyping is two-tail extreme selection, but simple linear regression analysis gives a biased genetic effect estimate. Here, we present a simple correction for the bias.

Structural and Functional Studies of gpX of Escherichia coli Phage P2 Reveal a Widespread Role for LysM Domains in the Baseplates of Contractile-Tailed Phages

PubMed Central

Fatehi Hassanabad, Mostafa; Chang, Tom; Pirani, Nawaz; Bona, Diane; Edwards, Aled M.

2013-01-01

A variety of bacterial pathogenicity determinants, including the type VI secretion system and the virulence cassettes from Photorhabdus and Serratia, share an evolutionary origin with contractile-tailed myophages. The well-characterized Escherichia coli phage P2 provides an excellent system for studies related to these systems, as its protein composition appears to represent the “minimal” myophage tail. In this study, we used nuclear magnetic resonance (NMR) spectroscopy to determine the solution structure of gpX, a 68-residue tail baseplate protein. Although the sequence and structure of gpX are similar to those of LysM domains, which are a large family associated with peptidoglycan binding, we did not detect a peptidoglycan-binding activity for gpX. However, bioinformatic analysis revealed that half of all myophages, including all that possess phage T4-like baseplates, encode a tail protein with a LysM-like domain, emphasizing a widespread role for this domain in baseplate function. While phage P2 gpX comprises only a single LysM domain, many myophages display LysM domain fusions with other tail proteins, such as the DNA circulation protein found in Mu-like phages and gp53 of T4-like phages. Electron microscopy of P2 phage particles with an incorporated gpX-maltose binding protein fusion revealed that gpX is located at the top of the baseplate, near the junction of the baseplate and tail tube. gpW, the orthologue of phage T4 gp25, was also found to localize to this region. A general colocalization of LysM-like domains and gpW homologues in diverse phages is supported by our bioinformatic analysis. PMID:24097944

Ion mobility based on column leaching of South African gold tailings dam with chemometric evaluation.

PubMed

Cukrowska, Ewa M; Govender, Koovila; Viljoen, Morris

2004-07-01

New column leaching experiments were designed and used as an alternative rapid screening approach to element mobility assessment. In these experiments, field-moist material was treated with an extracting solution to assess the effects of acidification on element mobility in mine tailings. The main advantage of this version of column leaching experiments with partitioned segments is that they give quick information on current element mobility in conditions closely simulating field conditions to compare with common unrepresentative air-dried, sieved samples used for column leaching experiments. Layers from the tailings dump material were sampled and packed into columns. The design of columns allows extracting leachates from each layer. The extracting solutions used were natural (pH 6.8) and acidified (pH 4.2) rainwater. Metals and anions were determined in the leachates. The concentrations of metals (Ca, Mg, Fe, Mn, Al, Cr, Ni, Co, Zn, and Cu) in sample leachates were determined using ICP OES. The most important anions (NO3-, Cl-, and SO4(2)-) were determined using the closed system izotacophoresis ITP analyser. The chemical analytical data from tailings leaching and physico-chemical data from field measurements (including pH, conductivity, redox potential, temperature) were used for chemometric evaluation of element mobility. Principal factor analysis (PFA) was used to evaluate ions mobility from different layers of tailings dump arising from varied pH and redox conditions. It was found that the results from the partitioned column leaching illustrate much better complex processes of metals mobility from tailings dump than the total column. The chemometric data analysis (PFA) proofed the differences in the various layers leachability that are arising from physico-chemical processes due to chemical composition of tailings dump deposit. Copyright 2004 Elsevier Ltd.

Magnetic islands in the near geomagnetic tail and its implications for the mechanism of 1054 UT CDAW 6 substorm

NASA Technical Reports Server (NTRS)

Lin, N.; Walker, R. J.; Mcpherron, R. L.; Kivelson, M. G.

1990-01-01

During the 1054 UT CDAW 6 substorm event, two ISEE spacecraft observed dynamic changes in the magnetic field and in the flux of energetic particles in the near-earth plasma sheet. In the substorm growth phase, the magnetic field at both ISEE spacecraft became tail-like. Following expansion phase onset, two small scale magnetic islands were observed moving tailward at a velocity of about 580 km/s. The passage of these two magnetic islands was coincident with bursts of tailward streaming energetic particles. The length of the magnetic loops was estimated to have been about 2 to 3 earth radii while the height of the loops was less than 0.5 earth radii. The magnetic islands were produced by multipoint reconnection processes in the near tail plasma sheet which may have been associated with the formation of the near-earth neutral line and the subsequent formation of a large scale plasmoid. The near-earth neutral line retreated tailward later in the expansion phase, as suggested by the reversal of the streaming of energetic particles.

Evidence for modular evolution in a long-tailed pterosaur with a pterodactyloid skull.

PubMed

Lü, Junchang; Unwin, David M; Jin, Xingsheng; Liu, Yongqing; Ji, Qiang

2010-02-07

The fossil record is a unique source of evidence for important evolutionary phenomena such as transitions between major clades. Frustratingly, relevant fossils are still comparatively rare, most transitions have yet to be documented in detail and the mechanisms that underpin such events, typified by rapid large scale changes and for which microevolutionary processes seem insufficient, are still unclear. A new pterosaur (Mesozoic flying reptile) from the Middle Jurassic of China, Darwinopterus modularis gen. et sp. nov., provides the first insights into a prominent, but poorly understood transition between basal, predominantly long-tailed pterosaurs and the more derived, exclusively short-tailed pterodactyloids. Darwinopterus exhibits a remarkable 'modular' combination of characters: the skull and neck are typically pterodactyloid, exhibiting numerous derived character states, while the remainder of the skeleton is almost completely plesiomorphic and identical to that of basal pterosaurs. This pattern supports the idea that modules, tightly integrated complexes of characters with discrete, semi-independent and temporally persistent histories, were the principal focus of natural selection and played a leading role in evolutionary transitions.

Use of photogrammetry as a means to assess hybrids of rhesus (Macaca mulatta) and long-tailed (M. fascicularis) macaques.

PubMed

Jadejaroen, Janya; Hamada, Yuzuru; Kawamoto, Yoshi; Malaivijitnond, Suchinda

2015-01-01

Rhesus (Macaca mulatta) and long-tailed (M. fascicularis) macaques are the most commonly used non-human primate models for biomedical research, but it is difficult to identify these two species in the hybrid zone (15-20°N). In this work, we used morphological values obtained via photogrammetry to assess hybrids of rhesus and long-tailed macaques at Khao Khieow Open Zoo (KKZ; 13°21'N, 101°06'E), eastern Thailand. Long-tailed and rhesus macaques have species-specific tail lengths and contrasts of their yellowish pelages. The accuracy and precision of the relative tail length (%RTL) and the contrast of the yellow hue (Cb*) of the pelage, as obtained from photographs, were compared with the corresponding direct measurements (morphometrics). The photogrammetric and morphometric measurements of %RTL and Cb* were highly significantly correlated (r = 0.989 and 0.980, p < 0.001), and there were no significant differences between the two datasets (t test, p = 0.13 and 0.41; n = 42 and 17 for %RTL and Cb*, respectively). The reproducibilities of the %RTL and Cb* measurements (calculated in the photogrammetric case by taking photographs of the same macaques in two different environments) were significantly correlated between the datasets (r = 0.983 and 0.914, p < 0.001 and 0.005), and there were no significant differences between the datasets (t test, p = 0.539 and 0.344; n = 30 each for %RTL and Cb*, respectively). The %RTL and Cb* data were combined with data on the crown and cheek hair patterns and sex skin reddening of the macaques, and this combined data set was then analyzed by multiple correspondence analysis and agglomerative hierarchical cluster analysis, leading to the categorization of the rhesus macaques, long-tailed macaques, and hybrids at KKZ into five groups. Thus, photogrammetry can be utilized to identify macaque species or hybrids when species identification relies mainly on tail length and pelage color.

Predictability of Conversation Partners

NASA Astrophysics Data System (ADS)

Takaguchi, Taro; Nakamura, Mitsuhiro; Sato, Nobuo; Yano, Kazuo; Masuda, Naoki

2011-08-01

Recent developments in sensing technologies have enabled us to examine the nature of human social behavior in greater detail. By applying an information-theoretic method to the spatiotemporal data of cell-phone locations, [C. Song , ScienceSCIEAS0036-8075 327, 1018 (2010)] found that human mobility patterns are remarkably predictable. Inspired by their work, we address a similar predictability question in a different kind of human social activity: conversation events. The predictability in the sequence of one’s conversation partners is defined as the degree to which one’s next conversation partner can be predicted given the current partner. We quantify this predictability by using the mutual information. We examine the predictability of conversation events for each individual using the longitudinal data of face-to-face interactions collected from two company offices in Japan. Each subject wears a name tag equipped with an infrared sensor node, and conversation events are marked when signals are exchanged between sensor nodes in close proximity. We find that the conversation events are predictable to a certain extent; knowing the current partner decreases the uncertainty about the next partner by 28.4% on average. Much of the predictability is explained by long-tailed distributions of interevent intervals. However, a predictability also exists in the data, apart from the contribution of their long-tailed nature. In addition, an individual’s predictability is correlated with the position of the individual in the static social network derived from the data. Individuals confined in a community—in the sense of an abundance of surrounding triangles—tend to have low predictability, and those bridging different communities tend to have high predictability.

Chemical data and lead isotopic compositions of geochemical baseline samples from streambed sediments and smelter slag, lead isotopic compositions in fluvial tailings, and dendrochronology results from the Boulder River watershed, Jefferson County, Montana

USGS Publications Warehouse

Unruh, Daniel M.; Fey, David L.; Church, Stan E.

2000-01-01

IntroductionAs a part of the U.S. Geological Survey Abandoned Mine Lands Initiative, metal-mining related wastes in the Boulder River study area in northern Jefferson County, Montana, have been evaluated for their environmental effects. The study area includes a 24-km segment of the Boulder River in and around Basin, Montana and three principal tributaries to the Boulder River: Basin Creek, Cataract Creek, and High Ore Creek. Mine and prospect waste dumps and mill wastes are located throughout the drainage basins of these tributaries and in the Boulder River. Mine-waste material has been transported into and down streams, where it has mixed with and become incorporated into the streambed sediments. In some localities, mine waste material was placed directly in stream channels and was transported downstream forming fluvial tailings deposits along the stream banks. Water quality and aquatic habitat have been affected by trace-element-contaminated sediment that moves from mine wastes into and down streams during snowmelt and storm runoff events within the Boulder River watershed.Present-day trace element concentrations in the streambed sediments and fluvial tailings have been extensively studied. However, in order to accurately evaluate the impact of mining on the stream environments, it is also necessary to evaluate the pre-mining trace-element concentrations in the streambed sediments. Three types of samples have been collected for estimation of pre-mining concentrations: 1) streambed sediment samples from the Boulder River and its tributaries located upstream from historical mining activity, 2) stream terrace deposits located both upstream and downstream of the major tributaries along the Boulder River, and 3) cores through sediment in overbank deposits, in abandoned stream channels, or beneath fluvial tailings deposits. In this report, we present geochemical data for six stream-terrace samples and twelve sediment-core samples and lead isotopic data for six terrace and thirteen core samples. Sample localities are in table 1 and figures 1 and 2, and site and sample descriptions are in table 2.Geochemical data have been presented for cores through fluvial tailings on High Ore Creek, on upper Basin Creek, and on Jack Creek and Uncle Sam Gulch. Geochemical and lead isotopic data for modern streambed-sediment samples have been presented by Fey and others.Lead isotopic determinations in bed sediments have been shown to be an effective tool for evaluating the contributions from various sources to the metals in bed sediments. However, in order to make these calculations, the lead isotopic compositions of the contaminant sources must also be known. Consequently, we have determined the lead isotopic compositions of five streambed-sediment samples heavily contaminated with fluvial mine waste immediately downstream from large mines in the Boulder River watershed in order to determine the lead isotopic signatures of the contaminants. Summary geochemical data for the contaminants are presented here and geochemical data for the streambed-sediment samples are given by Fey and others.Downstream from the Katie mill site and Jib tailings, fluvial deposits of mill tailings are present on a 10-m by 50-m bar in the Boulder River below the confluence with Basin Creek. The source of these tailings is not known, but fluvial tailings are also present immediately downstream from the Katie mill site, which is immediately upstream from the confluence with Basin Creek. Nine cores of fluvial tailings from this bar were analyzed.Dendrochronology samples were taken at several stream terrace localities to provide age control on the stream terrace deposits. Trees growing on the surfaces of stream terraces provide a minimum age for the terrace deposits, although floods subsequent to the trees' growth could have deposited post-mining overbank deposits around the trees. Historical data were also used to provide estimates of minimum ages of cultural features and to bracket the age of events.

Historical analysis of Newfoundland dog fur colour genetics

PubMed Central

Bondeson, J.

2015-01-01

This article makes use of digitized historic newspapers to analyze Newfoundland dog fur colour genetics, and fur colour variations over time. The results indicate that contrary to the accepted view, the ‘Solid’ gene was introduced into the British population of Newfoundland dogs in the 1840s. Prior to that time, the dogs were white and black (Landseer) or white and brown, and thus spotted/spotted homozygotes. Due to ‘Solid’ being dominant over ‘spotted’, and selective breeding, today the majority of Newfoundland dogs are solid black. Whereas small white marks on the chest and/or paw appears to be a random event, the historical data supports the existence of an ‘Irish spotted’ fur colour pattern, with white head blaze, breast, paws and tail tip, in spotted/spotted homozygotes. PMID:26623371

A global classification of coastal flood hazard climates associated with large-scale oceanographic forcing.

PubMed

Rueda, Ana; Vitousek, Sean; Camus, Paula; Tomás, Antonio; Espejo, Antonio; Losada, Inigo J; Barnard, Patrick L; Erikson, Li H; Ruggiero, Peter; Reguero, Borja G; Mendez, Fernando J

2017-07-11

Coastal communities throughout the world are exposed to numerous and increasing threats, such as coastal flooding and erosion, saltwater intrusion and wetland degradation. Here, we present the first global-scale analysis of the main drivers of coastal flooding due to large-scale oceanographic factors. Given the large dimensionality of the problem (e.g. spatiotemporal variability in flood magnitude and the relative influence of waves, tides and surge levels), we have performed a computer-based classification to identify geographical areas with homogeneous climates. Results show that 75% of coastal regions around the globe have the potential for very large flooding events with low probabilities (unbounded tails), 82% are tide-dominated, and almost 49% are highly susceptible to increases in flooding frequency due to sea-level rise.

Numerical study on the power extraction performance of a flapping foil with a flexible tail

NASA Astrophysics Data System (ADS)

Wu, J.; Shu, C.; Zhao, N.; Tian, F.-B.

2015-01-01

The numerical study on the power extraction performance of a flapping foil with a flexible tail is performed in this work. A NACA0015 airfoil is arranged in a two-dimensional laminar flow and imposed with a synchronous harmonic plunge and pitch rotary motion. A flat plate that is attached to the trailing edge of the foil is utilized to model a tail, and so they are viewed as a whole for the purpose of power extraction. In addition, the tail either is rigid or can deform due to the exerted hydrodynamic forces. To implement numerical simulations, an immersed boundary-lattice Boltzmann method is employed. At a Reynolds number of 1100 and the position of the pitching axis at third chord, the influences of the mass and flexibility of the tail as well as the frequency of motion on the power extraction are systematically examined. It is found that compared to the foil with a rigid tail, the efficiency of power extraction for the foil with a deformable tail can be improved. Based on the numerical analysis, it is indicated that the enhanced plunging component of the power extraction, which is caused by the increased lift force, directly contributes to the efficiency improvement. Since a flexible tail with medium and high masses is not beneficial to the efficiency improvement, a flexible tail with low mass together with high flexibility is recommended in the flapping foil based power extraction system.

A THEMIS Survey of Flux Ropes and Traveling Compression Regions: Location of the Near-Earth Reconnection Site During Solar Minimum

NASA Technical Reports Server (NTRS)

Imber, S. M.; Slavin, J. A.; Auster, H. U.; Angelopoulos, V.

2011-01-01

A statistical study of flux ropes and traveling compression regions (TCRs) during the Time History of Events and Macroscale Interactions during Substorms (THEMIS) second tail season has been performed. A combined total of 135 flux ropes and TCRs in the range GSM X approx -14 to -31 R(sub E) were identified, many of these occurring in series of two or more events separated by a few tens of seconds. Those occurring within 10 min of each other were combined into aggregated reconnection events. For the purposes of this survey, these are most likely the products of reconnect ion occurring simultaneously at multiple, closely spaced x-lines as opposed to statistically independent episodes of reconnection. The 135 flux ropes and TCRs were grouped into 87 reconnection events; of these, 28 were moving tailward and 59 were moving Earthward. The average location of the near-Earth x-line determined from statistical analysis of these reconnection events is (X(sub GSM), Y*(sub GSM)) = (-30R(sub E), 5R(sub E)), where Y* includes a correction for the solar aberration angle. A strong east-west asymmetry is present in the tailward events, with >80% being observed at GSM Y* > O. Our results indicate that the Earthward flows are similarly asymmetric in the midtail region, becoming more symmetric inside - 18 R(sub E). Superposed epoch analyses indicate that the occurrence of reconnection closer to the Earth, i.e., X > -20 R(sub E), is associated with elevated solar wind velocity and enhanced negative interplanetary magnetic field B(sub z). Reconnection events taking place closer to the Earth are also far more effective in producing geomagnetic activity, judged by the AL index, than reconnection initiated beyond X approx -25 R(sub E).

Gait changes precede overt arthritis and strongly correlate with symptoms and histopathological events in pristane-induced arthritis

PubMed Central

2010-01-01

Introduction Pristane-induced arthritis (PIA) in the rat has been described as an animal model of inflammatory arthritis which exhibits features similar to rheumatoid arthritis in humans, such as a chronic, destructive, and symmetrical involvement of peripheral joints. However, so far little is known about the earliest inflammatory events and their influence on locomotor behaviour during the course of PIA. To investigate this issue a detailed analysis of the pathologic changes occurring during the prodromal and early stages of PIA was performed. Methods Arthritis was induced in DA.rats by injection of 150 μl 2,6,10,4-tetramethyl-pentadecane (pristane) at the base of the tail and changes in locomotor behaviour of the affected paws were monitored using the CatWalk quantitative gait analysis system. The pathologic events occurring in the joints of pristane-injected animals were studied before onset, at onset, and during acute phase of arthritis by histological methods. Results Gait analysis revealed that changes in locomotion such as reduced paw print areas and stance phase time are already apparent before the onset of clinically discernible arthritis symptoms (erythema, paw swelling) and correlate with PIA scores. In agreement with these findings, inflammatory tenosynovitis could be observed by histology already before the onset of erythema and swelling of the respective paws. In the most heavily affected rats also irregularities in step sequence patterns occurred A kinetic analysis of clinical and histological findings demonstrated that gait changes precede the pathological changes occurring during the acute phase of pristane-induced arthritis. Conclusions Gait analysis allows for pinpointing the initial inflammatory changes in experimental arthritis models such as pristane-induced arthritis. Analysis of early clinically relevant symptoms in arthritis models may facilitate the search for novel therapeutics to interfere with pain, inflammation and joint destruction in patients suffering from inflammatory arthritis. PMID:20222952

Molecular Analysis of Arthrobacter Myovirus vB_ArtM-ArV1: We Blame It on the Tail

PubMed Central

Šimoliūnas, Eugenijus; Truncaitė, Lidija; Zajančkauskaitė, Aurelija; Nainys, Juozas; Kaupinis, Algirdas; Valius, Mindaugas; Meškys, Rolandas

2017-01-01

ABSTRACT This is the first report on a myophage that infects Arthrobacter. A novel virus, vB_ArtM-ArV1 (ArV1), was isolated from soil using Arthrobacter sp. strain 68b for phage propagation. Transmission electron microscopy showed its resemblance to members of the family Myoviridae: ArV1 has an isometric head (∼74 nm in diameter) and a contractile, nonflexible tail (∼192 nm). Phylogenetic and comparative sequence analyses, however, revealed that ArV1 has more genes in common with phages from the family Siphoviridae than it does with any myovirus characterized to date. The genome of ArV1 is a linear, circularly permuted, double-stranded DNA molecule (71,200 bp) with a GC content of 61.6%. The genome includes 101 open reading frames (ORFs) yet contains no tRNA genes. More than 50% of ArV1 genes encode unique proteins that either have no reliable identity to database entries or have homologues only in Arthrobacter phages, both sipho- and myoviruses. Using bioinformatics approaches, 13 ArV1 structural genes were identified, including those coding for head, tail, tail fiber, and baseplate proteins. A further 6 ArV1 ORFs were annotated as encoding putative structural proteins based on the results of proteomic analysis. Phylogenetic analysis based on the alignment of four conserved virion proteins revealed that Arthrobacter myophages form a discrete clade that seems to occupy a position somewhat intermediate between myo- and siphoviruses. Thus, the data presented here will help to advance our understanding of genetic diversity and evolution of phages that constitute the order Caudovirales. IMPORTANCE Bacteriophages, which likely originated in the early Precambrian Era, represent the most numerous population on the planet. Approximately 95% of known phages are tailed viruses that comprise three families: Podoviridae (with short tails), Siphoviridae (with long noncontractile tails), and Myoviridae (with contractile tails). Based on the current hypothesis, myophages, which may have evolved from siphophages, are thought to have first emerged among Gram-negative bacteria, whereas they emerged only later among Gram-positive bacteria. The results of the molecular characterization of myophage vB_ArtM-ArV1 presented here conform to the aforementioned hypothesis, since, at a glance, bacteriophage vB_ArtM-ArV1 appears to be a siphovirus that possesses a seemingly functional contractile tail. Our work demonstrates that such “chimeric” myophages are of cosmopolitan nature and are likely characteristic of the ecologically important soil bacterial genus Arthrobacter. PMID:28122988

Analysis of the Tail Structures of Comet 1P/Halley 1910 II

NASA Astrophysics Data System (ADS)

Voelzke, Marcos Rincon

2013-11-01

For the purpose of identifying, measuring, and correlating the morphological structures along the plasma tail of 1P/Halley, 886 images from September 1909 to May 1911 are analysed. These images are from the Atlas of Comet Halley 1910 II (DONN; RAHE; BRANDT, 1986).

DETERMINATION OF GENETIC DIVERSITY AND PATERNITY IN THE GRAY-TAILED VOLE (MICROTUS CANICAUDUS) BY RAPD-PCR

EPA Science Inventory

Genetic relatedness of gray-tailed voles (Microtus canicaudus) was determined by random amplified polymorphic DNA (RAPD). This work is the first reported use of the RAPD method for pedigree analysis of M. canicaudus and demonstrates the feasibility of RAPD for assessing paternity...

Hyper-X Hot Structures Comparison of Thermal Analysis and Flight Data

NASA Technical Reports Server (NTRS)

Amundsen, Ruth M.; Leonard, Charles P.; Bruce, Walter E., III

2004-01-01

The Hyper-X (X-43A) program is a flight experiment to demonstrate scramjet performance and operability under controlled powered free-flight conditions at Mach 7 and 10. The Mach 7 flight was successfully completed on March 27, 2004. Thermocouple instrumentation in the hot structures (nose, horizontal tail, and vertical tail) recorded the flight thermal response of these components. Preflight thermal analysis was performed for design and risk assessment purposes. This paper will present a comparison of the preflight thermal analysis and the recorded flight data.

Voter model with non-Poissonian interevent intervals

NASA Astrophysics Data System (ADS)

Takaguchi, Taro; Masuda, Naoki

2011-09-01

Recent analysis of social communications among humans has revealed that the interval between interactions for a pair of individuals and for an individual often follows a long-tail distribution. We investigate the effect of such a non-Poissonian nature of human behavior on dynamics of opinion formation. We use a variant of the voter model and numerically compare the time to consensus of all the voters with different distributions of interevent intervals and different networks. Compared with the exponential distribution of interevent intervals (i.e., the standard voter model), the power-law distribution of interevent intervals slows down consensus on the ring. This is because of the memory effect; in the power-law case, the expected time until the next update event on a link is large if the link has not had an update event for a long time. On the complete graph, the consensus time in the power-law case is close to that in the exponential case. Regular graphs bridge these two results such that the slowing down of the consensus in the power-law case as compared to the exponential case is less pronounced as the degree increases.

Separator Reconnection at Earth's Dayside Magnetopause and the Tail: MMS Observations Compared to Global 3D Simulations

NASA Astrophysics Data System (ADS)

Buzulukova, N.; Dorelli, J.; Glocer, A.

2017-12-01

We present the results of global high resolution resistive magnetohydrodynamics (MHD BATS-R-US) simulations of Earth's magnetosphere. We extract location of magnetic separators with RECONX tool and compare the results with observations from the Magnetospheric Multiscale (MMS). A few cases are analysed including a southward IMF magnetopause crossing during October 16, 2015 that was previously identified as an electron diffusion region (EDR) event. The simulation predicts a complex time-dependent magnetic topology consisting of multiple separators and flux ropes. Despite the topological complexity, the predicted distance between MMS and the primary separator is less than 0.5 Earth radii. The simulation shows that the existence of IMF Bx results in a duskward shift of the location of the topological separator. The results are explained by a combined effect of solar wind draping and pile-up effect that modify the current density across the magnetopause and affect the location of the separator. The RECONX tool also is used to extract the separator location in the geomagnetic tail, and relate transient tail structures (bursty bulk flows) to the location of separator. These results suggest that global magnetic topology, rather than local magnetic geometry alone, determines the location of the separator reconnection both at the dayside magnetopause and in the tail. We show that the resistive MHD model helps to understand the global context of local MMS observations.

Detecting novel SNPs and breed-specific haplotypes at calpastatin gene in Iranian fat- and thin-tailed sheep breeds and their effects on protein structure.

PubMed

Aali, Mohsen; Moradi-Shahrbabak, Mohammad; Moradi-Shahrbabak, Hosein; Sadeghi, Mostafa

2014-03-01

Calpastatin has been introduced as a potential candidate gene for growth and meat quality traits. In this study, genetic variability was investigated in the exon 6 and its intron boundaries of ovine CAST gene by PCR-SSCP analysis and DNA sequencing. Also a protein sequence and structural analysis were performed to predict the possible impact of amino acid substitutions on physicochemical properties and structure of the CAST protein. A total of 487 animals belonging to four ancient Iranian sheep breeds with different fat metabolisms, Lori-Bakhtiari and Chall (fat-tailed), Zel-Atabay cross-bred (medium fat-tailed) and Zel (thin-tailed), were analyzed. Eight unique SSCP patterns, representing eight different sequences or haplotypes, CAST-1, CAST-2 and CAST-6 to CAST-11, were identified. Haplotypes CAST-1 and CAST-2 were most common with frequency of 0.365 and 0.295. The novel haplotype CAST-8 had considerable frequency in Iranian sheep breeds (0.129). All the consensus sequences showed 98-99%, 94-98%, 92-93% and 82-83% similarity to the published ovine, caprine, bovine and porcine CAST locus sequences, respectively. Sequence analysis revealed four SNPs in intron 5 (C24T, G62A, G65T and T69-) and three SNPs in exon 6 (c.197A>T, c.282G>T and c.296C>G). All three SNPs in exon 6 were missense mutations which would result in p.Gln 66 Leu, p.Glu 94 Asp and p.Pro 99 Arg substitutions, respectively, in CAST protein. All three amino acid substitutions affected the physicochemical properties of ovine CAST protein including hydrophobicity, amphiphilicity and net charge and subsequently might influence its structure and effect on the activity of Ca2+ channels; hence, they might regulate calpain activity and afterwards meat tenderness and growth rate. The Lori-Bakhtiari population showed the highest heterozygosity in the ovine CAST locus (0.802). Frequency difference of haplotypes CAST-10 and CAST-8 between Lori-Bakhtiari (fat-tailed) and Zel (thin-tailed) breeds was highly significant (P<0.001), indicating that these two haplotypes might be breed-specific haplotypes that distinguish between fat-tailed and thin-tailed sheep breeds. Copyright © 2013 Elsevier B.V. All rights reserved.

Microbial diversity at the moderate acidic stage in three different sulfidic mine tailings dumps generating acid mine drainage.

PubMed

Korehi, Hananeh; Blöthe, Marco; Schippers, Axel

2014-11-01

In freshly deposited sulfidic mine tailings the pH is alkaline or circumneutral. Due to pyrite or pyrrhotite oxidation the pH is dropping over time to pH values <3 at which acidophilic iron- and sulfur-oxidizing prokaryotes prevail and accelerate the oxidation processes, well described for several mine waste sites. The microbial communities at the moderate acidic stage in mine tailings are only scarcely studied. Here we investigated the microbial diversity via 16S rRNA gene sequence analysis in eight samples (pH range 3.2-6.5) from three different sulfidic mine tailings dumps in Botswana, Germany and Sweden. In total 701 partial 16S rRNA gene sequences revealed a divergent microbial community between the three sites and at different tailings depths. Proteobacteria and Firmicutes were overall the most abundant phyla in the clone libraries. Acidobacteria, Actinobacteria, Bacteroidetes, and Nitrospira occurred less frequently. The found microbial communities were completely different to microbial communities in tailings at

Post-depositional behaviour of mercury and arsenic in submarine mine tailings deposited in Buyat Bay, North Sulawesi, Indonesia.

PubMed

Shepherd, Thomas; Rumengan, Inneke; Sahami, Ali

2018-06-01

The post-depositional geochemical behaviour of mercury and arsenic in submarine mine tailings from the Mesel Gold Mine in Buyat Bay, North Sulawesi, Indonesia was assessed by in situ sampling of tailings porewaters using dialysis arrays and seawater and fish monitoring. Under steady-state conditions one year after cessation of tailings discharge, the calculated arsenic efflux incrementally added 0.8 μg/L of arsenic to the overlying seawater. The mercury efflux across the tailings-seawater interface was negligible. The arsenic and mercury concentration in seawater bottom samples monitored biannually during a 9-year post-closure program were 1.54 μg/L and <0.05 μg/L, respectively. Analysis of 650 fish tissue samples, from the post-closure monitoring had mean mercury and arsenic concentrations consistently below the FAO/WHO CODEX, and Australian and New Zealand National Food Standards, respectively. The results of the porewater, seawater and fish tissue demonstrate that the arsenic and mercury-bearing bearing compounds in the tailings are geochemically stable. Copyright © 2018 Elsevier Ltd. All rights reserved.

Energy and Pitch Distribution of Spontaneously-generated High-energy Bulk Ions in the RFP

NASA Astrophysics Data System (ADS)

Kim, Jungha; Anderson, Jay; Reusch, Joshua; Eilerman, Scott; Capecchi, William

2014-10-01

Magnetic reconnection events in the reversed field pinch (RFP) are known to heat bulk and impurity ions. Runaway due to a parallel electric field has recently been confirmed as an important acceleration mechanism for high energy test ions supplied by a neutral beam. This effect does not, however, explain the change in distribution of nearly Maxwellian bulk ions at a reconnection event. By operating MST near maximum current and low electron density, significant fusion neutron flux can be generated without neutral beam injection. The bulk ion distribution created in these plasmas is well-confined, non-Maxwellian, and can be measured by the Advanced Neutral Particle Analyzer (ANPA) placed at a radial or tangential porthole. Data show a high energy tail up to 25 keV with a relatively higher signal in the low energy channels (8-15 keV) at the radial port following a reconnection event. Analysis of the energy dependence of trapped orbits sampled by the ANPA at the radial view implies an abundance of lower energy particles in regions of higher neutral density. This mandates a careful deconvolution of the measured ANPA signal to compute the fast ion distribution. This work is supported by the US DOE and NSF.

Mechanism for the recent ocean warming events on the Scotian Shelf of eastern Canada

NASA Astrophysics Data System (ADS)

Brickman, D.; Hebert, D.; Wang, Z.

2018-03-01

In 2012, 2014, and 2015 anomalous warm events were observed in the subsurface waters in the Scotian Shelf region of eastern Canada. Monthly output from a high resolution numerical ocean model simulation of the North Atlantic ocean for the period 1990-2015 is used to investigate this phenomenon. It is found that the model shows skill in simulating the anomaly fields derived from various sources of data, and the observed warming trend over the last decade. From analysis of the model run it is found that the anomalies originate from the interaction between the Gulf Stream and the Labrador Current at the tail of the Grand Banks (south of Newfoundland). This interaction results in the creation of anomalous warm/salty (or cold/fresh) eddies that travel east-to-west along the shelfbreak. These anomalies penetrate into the Gulf of St. Lawrence, onto the Scotian Shelf, and into the Gulf of Maine via deep channels along the shelfbreak. The observed warming trend can be attributed to an increase in the frequency of creation of warm anomalies during the last decade. Strong anomalous events are commonly observed in the data and model, and thus should be considered as part of the natural variability of the coupled atmosphere-ocean system.

miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis.

PubMed

Patel, Parth; Ramachandruni, S Deepthi; Kakrana, Atul; Nakano, Mayumi; Meyers, Blake C

2016-02-01

We describe miTRATA, the first web-based tool for microRNA Truncation and Tailing Analysis--the analysis of 3' modifications of microRNAs including the loss or gain of nucleotides relative to the canonical sequence. miTRATA is implemented in Python (version 3) and employs parallel processing modules to enhance its scalability when analyzing multiple small RNA (sRNA) sequencing datasets. It utilizes miRBase, currently version 21, as a source of known microRNAs for analysis. miTRATA notifies user(s) via email to download as well as visualize the results online. miTRATA's strengths lie in (i) its biologist-focused web interface, (ii) improved scalability via parallel processing and (iii) its uniqueness as a webtool to perform microRNA truncation and tailing analysis. miTRATA is developed in Python and PHP. It is available as a web-based application from https://wasabi.dbi.udel.edu/∼apps/ta/. meyers@dbi.udel.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Roles for the Cytoplasmic Tails of the Fusion and Hemagglutinin-Neuraminidase Proteins in Budding of the Paramyxovirus Simian Virus 5

PubMed Central

Waning, David L.; Schmitt, Anthony P.; Leser, George P.; Lamb, Robert A.

2002-01-01

The efficient release of many enveloped viruses from cells involves the coalescence of viral components at sites of budding on the plasma membrane of infected cells. This coalescence is believed to require interactions between the cytoplasmic tails of surface glycoproteins and the matrix (M) protein. For the paramyxovirus simian virus 5 (SV5), the cytoplasmic tail of the hemagglutinin-neuraminidase (HN) protein has been shown previously to be important for normal virus budding. To investigate a role for the cytoplasmic tail of the fusion (F) protein in virus assembly and budding, we generated a series of F cytoplasmic tail-truncated recombinant viruses. Analysis of these viruses in tissue culture indicated that the cytoplasmic tail of the F protein was dispensable for normal virus replication and budding. To investigate further the requirements for assembly and budding of SV5, we generated two double-mutant recombinant viruses that lack 8 amino acids of the predicted 17-amino-acid HN protein cytoplasmic tail in combination with truncation of either 10 or 18 amino acids from the predicted 20-amino-acid F protein cytoplasmic tail. Both of the double mutant recombinant viruses displayed a replication defect in tissue culture and a budding defect, the extent of which was dependant on the length of the remaining F cytoplasmic tail. Taken together, this work and our earlier data on virus-like particle formation (A. P. Schmitt, G. P. Leser, D. L. Waning, and R. A. Lamb, J. Virol. 76:3953-3964, 2002) suggest a redundant role for the cytoplasmic tails of the HN and F proteins in virus assembly and budding. PMID:12186912

Brain, music, and non-Poisson renewal processes

NASA Astrophysics Data System (ADS)

Bianco, Simone; Ignaccolo, Massimiliano; Rider, Mark S.; Ross, Mary J.; Winsor, Phil; Grigolini, Paolo

2007-06-01

In this paper we show that both music composition and brain function, as revealed by the electroencephalogram (EEG) analysis, are renewal non-Poisson processes living in the nonergodic dominion. To reach this important conclusion we process the data with the minimum spanning tree method, so as to detect significant events, thereby building a sequence of times, which is the time series to analyze. Then we show that in both cases, EEG and music composition, these significant events are the signature of a non-Poisson renewal process. This conclusion is reached using a technique of statistical analysis recently developed by our group, the aging experiment (AE). First, we find that in both cases the distances between two consecutive events are described by nonexponential histograms, thereby proving the non-Poisson nature of these processes. The corresponding survival probabilities Ψ(t) are well fitted by stretched exponentials [ Ψ(t)∝exp (-(γt)α) , with 0.5<α<1 .] The second step rests on the adoption of AE, which shows that these are renewal processes. We show that the stretched exponential, due to its renewal character, is the emerging tip of an iceberg, whose underwater part has slow tails with an inverse power law structure with power index μ=1+α . Adopting the AE procedure we find that both EEG and music composition yield μ<2 . On the basis of the recently discovered complexity matching effect, according to which a complex system S with μS<2 responds only to a complex driving signal P with μP⩽μS , we conclude that the results of our analysis may explain the influence of music on the human brain.

The worldwide impact of Donati's comet on art and society in the mid-19th century

NASA Astrophysics Data System (ADS)

Gasperini, Antonella; Galli, Daniele; Nenzi, Laura

2011-06-01

Donati's comet was one of the most spectacular astronomical events of the nineteenth century. Its extended sword-like tail was a spectacular sight that inspired several literary and artistic representations. Traces of Donati's comet are found in popular magazines, children's books, collection cards, and household objects through the beginning of the twentieth century.

Impact of fresh tailing deposition on the evolution of groundwater hydrogeochemistry at the abandoned Manitou mine site, Quebec, Canada.

PubMed

Maqsoud, Abdelkabir; Neculita, Carmen Mihaela; Bussière, Bruno; Benzaazoua, Mostafa; Dionne, Jean

2016-05-01

The abandoned Manitou mine site has produced acid mine drainage (AMD) for several decades. In order to limit the detrimental environmental impacts of AMD, different rehabilitation scenarios were proposed and analyzed. The selected rehabilitation scenario was to use fresh tailings from the neighboring Goldex gold mine as monolayer cover and to maintain an elevated water table. In order to assess the impact of the Goldex tailing deposition on the hydrogeochemistry of the Manitou mine site, a network of 30 piezometers was installed. These piezometers were used for continuous measurement of the groundwater level, as well as for water sampling campaigns for chemical quality monitoring, over a 3-year period. Hydrochemical data were analyzed using principal component analysis. Results clearly showed the benefic impact of fresh tailing deposition on the groundwater quality around the contaminated area. These findings were also confirmed by the evolution of electrical conductivity. In addition to the improvement of the physicochemical quality of water on the Manitou mine site, new tailing deposition induced an increase of water table level. However, at this time, the Manitou reactive tailings are not completely submerged and possible oxidation might still occur, especially after ceasing of the fresh tailing deposition. Therefore, complementary rehabilitation scenarios should still be considered.

The most basal ankylosaurine dinosaur from the Albian-Cenomanian of China, with implications for the evolution of the tail club.

PubMed

Zheng, Wenjie; Jin, Xingsheng; Azuma, Yoichi; Wang, Qiongying; Miyata, Kazunori; Xu, Xing

2018-02-27

The tail club knob is a highly specialized structure thought to characterize a subgroup of the ankylosaurine ankylosaurians, and the oldest documented tail club knob in the fossil record occurred in the Campanian ankylosaurine Pinacosaurus. Here we report a new ankylosaurid Jinyunpelta sinensis, gen. et sp. nov., from the Albian-Cenomanian Liangtoutang Formation, Jinyun County, Zhejiang, China. This is the first definitive and the best preserved ankylosaurid dinosaur ever found in southern China. Jinyunpelta possesses unique cranial features differs from other ankylosaurs including two paranasal apertures level with and posterior to the external naris, a triangular fossa on the anterodorsal edge of the maxilla, an antorbital fossa in the junction between the maxilla, lacrimal and jugal, and an anterior process of the prearticular that lies ventral to the splenial. Our phylogenetic analysis suggests Jinyunpelta as the most basal ankylosaurine dinosaur. Jinyunpelta has a tail club with interlocking caudal vertebrae and a well-developed tail club knob, it represents the oldest and the most basal ankylosaurian known to have a well-developed tail club knob. The new discovery thus demonstrates that a large and highly modified tail club evolved at the base of the ankylosaurine ankylosaurs at least about 100 million years ago.

Rainfall extremes from TRMM data and the Metastatistical Extreme Value Distribution

NASA Astrophysics Data System (ADS)

Zorzetto, Enrico; Marani, Marco

2017-04-01

A reliable quantification of the probability of weather extremes occurrence is essential for designing resilient water infrastructures and hazard mitigation measures. However, it is increasingly clear that the presence of inter-annual climatic fluctuations determines a substantial long-term variability in the frequency of occurrence of extreme events. This circumstance questions the foundation of the traditional extreme value theory, hinged on stationary Poisson processes or on asymptotic assumptions to derive the Generalized Extreme Value (GEV) distribution. We illustrate here, with application to daily rainfall, a new approach to extreme value analysis, the Metastatistical Extreme Value Distribution (MEVD). The MEVD relaxes the above assumptions and is based on the whole distribution of daily rainfall events, thus allowing optimal use of all available observations. Using a global dataset of rain gauge observations, we show that the MEVD significantly outperforms the Generalized Extreme Value distribution, particularly for long average recurrence intervals and when small samples are available. The latter property suggests MEVD to be particularly suited for applications to satellite rainfall estimates, which only cover two decades, thus making extreme value estimation extremely challenging. Here we apply MEVD to the TRMM TMPA 3B42 product, an 18-year dataset of remotely-sensed daily rainfall providing a quasi-global coverage. Our analyses yield a global scale mapping of daily rainfall extremes and of their distributional tail properties, bridging the existing large gaps in ground-based networks. Finally, we illustrate how our global-scale analysis can provide insight into how properties of local rainfall regimes affect tail estimation uncertainty when using the GEV or MEVD approach. We find a dependence of the estimation uncertainty, for both the GEV- and MEV-based approaches, on the average annual number and on the inter-annual variability of rainy days. In particular, estimation uncertainty decreases 1) as the mean annual number of wet days increases, and 2) as the variability in the number of rainy days, expressed by its coefficient of variation, decreases. We tentatively explain this behavior in terms of the assumptions underlying the two approaches.

An economic analysis of black-tailed prairie dog (Cynomys ludovicianus) control

Treesearch

Alan R. Collins; John P. Workman; Daniel W. Uresk

1984-01-01

Black-tailed prairie dog (Cynomys ludovicianus) control by poisoning with zinc phosphide was not economically feasible in the Conata Basin of South Dakota. Economic analyses were conducted from U.S. Forest Service and rancher viewpoints. Control programs were analyzed with annual maintenance or complete retreatment of initially treated areas to...

Fuels and chemicals from equine-waste-derived tail gas reactive pyrolysis oil: technoeconomic analysis, environmental and exergetic life cycle assessment

USDA-ARS?s Scientific Manuscript database

Horse manure, whose improper disposal imposes considerable environmental costs, constitutes an apt feedstock for conversion to renewable fuels and chemicals when tail gas reactive pyrolysis (TGRP) is employed. TGRP is a modification of fast pyrolysis that recycles its non-condensable gases and produ...

Sylvatic plague in a Canadian black-tailed prairie dog (Cynomys ludovicianus).

PubMed

Antonation, Kym S; Shury, Todd K; Bollinger, Trent K; Olson, Adam; Mabon, Philip; Van Domselaar, Gary; Corbett, Cindi R

2014-07-01

In 2010, a black-tailed prairie dog (Cynomys ludovicianus) was found dead in Grasslands National Park, Saskatchewan, Canada. Postmortem gross and histologic findings indicated bacterial septicemia, likely due to Yersinia pestis, which was confirmed by molecular analysis. This is the first report of Y. pestis in the prairie dog population within Canada.

Demography of black-tailed prairie dog populations reoccupying sites treated with rodenticide

Treesearch

R. P. Cincotta; Daniel W. Uresk; R. M. Hansen

1987-01-01

A rodenticide, zinc phosphide, was applied to remove black-tailed prairie dogs (Cynomys ludovicianus) from 6 haofa prairie dog colony in southwestern South Dakota. Another adjacent 6 ha was left untreated. The removal experiment was repeated two consecutive years. Contingency table analysis showed that the resultant population was not homogeneous;...

The poly(A) tail length of casein mRNA in the lactating mammary gland changes depending upon the accumulation and removal of milk.

PubMed Central

Kuraishi, T; Sun, Y; Aoki, F; Imakawa, K; Sakai, S

2000-01-01

The length of casein mRNA from the lactating mouse mammary gland, as assessed on Northern blots, is shorter after weaning, but is elongated following the removal of milk. In order to investigate this phenomenon, the molecular structures of beta- and gamma-casein mRNAs were analysed. The coding and non-coding regions of the two forms were the same length, but the long form of casein mRNA had a longer poly(A) tail than the short form (P<0.05). In order to examine the stability of casein mRNA under identical conditions, casein mRNAs with the long and short poly(A) tails were incubated in the rabbit reticulocyte lysate (RRL) cell-free translation system. Casein mRNA with the long poly(A) tail had a longer half-life than that with the short tail (P<0.05). The beta- and gamma-casein mRNAs were first degraded into 0.92 and 0.81 kb fragments respectively. With undegraded mRNA, the poly(A) tail shortening by exoribonuclease was not observed until the end of the incubation. Northern blot analysis showed that casein mRNA with the long poly(A) tail was protected efficiently from endoribonucleases. We conclude that the length of the poly(A) tail of casein mRNA in the lactating mammary gland changes depending upon the accumulation and removal of the gland's milk, and we show that the longer poly(A) tail potentially protects the mRNA from degradation by endoribonucleases. PMID:10749689

Acoustic characteristics of underwater tail slaps used by Norwegian and Icelandic killer whales (Orcinus orca) to debilitate herring (Clupea harengus).

PubMed

Simon, Malene; Wahlberg, Magnus; Ugarte, Fernando; Miller, Lee A

2005-06-01

Norwegian killer whales debilitate prey by slapping their tails into herring schools. These underwater tail slaps produce a thud-like sound. It is unclear whether this sound is caused by cavitation and/or physical contact between herring and whale tail. Also the forces causing debilitation of the fish are not understood. Here we present an acoustic analysis of underwater tail slaps using a multi-channel wide (150 kHz) band recording system. Underwater tail slaps produced by Norwegian killer whales generated sounds consisting of multiple pulses with source levels of 186+/-5.4 dB (pp) re.1 microPa at 1 m (+/-1 s.d., N = 4). The -3 dB and 97% energy bandwidths were 36.8+/-22.5 kHz and 130.5+/-17.5 kHz (+/-1 s.d., N = 13), respectively, with a centre frequency of 46.1+/-22.3 kHz. The similarities between the acoustic properties of underwater tail slaps recorded from killer whales in Norway, and thud-like sounds recorded from killer whales in Iceland suggest that Norwegian and Icelandic killer whales use similar hunting techniques. The acoustic characteristics of sounds produced by underwater tail slaps were similar to the ones from other cavitation sound sources described in the literature, both in term of temporal and frequency features as well as in source level. We suggest that multiple factors generated by the tail slaps like particle fluctuations, turbulence, pressure changes and physical impact cause debilitation of herring.

Vertical accretion sand proxies of gaged floods along the upper Little Tennessee River, Blue Ridge Mountains, USA

NASA Astrophysics Data System (ADS)

Leigh, David S.

2018-02-01

Understanding environmental hazards presented by river flooding has been enhanced by paleoflood analysis, which uses sedimentary records to document floods beyond historical records. Bottomland overbank deposits (e.g., natural levees, floodbasins, meander scars, low terraces) have the potential as continuous paleoflood archives of flood frequency and magnitude, but they have been under-utilized because of uncertainty about their ability to derive flood magnitude estimates. The purpose of this paper is to provide a case study that illuminates tremendous potential of bottomland overbank sediments as reliable proxies of both flood frequency and magnitude. Methods involve correlation of particle-size measurements of the coarse tail of overbank deposits (> 0.25 mm sand) from three separate sites with historical flood discharge records for the upper Little Tennessee River in the Blue Ridge Mountains of the southeastern United States. Results show that essentially all floods larger than a 20% probability event can be detected by the coarse tail of particle-size distributions, especially if the temporal resolution of sampling is annual or sub-annual. Coarser temporal resolution (1.0 to 2.5 year sample intervals) provides an adequate record of large floods, but is unable to discriminate individual floods separated by only one to three years. Measurements of > 0.25 mm sand that are normalized against a smoothed trend line through the down-column data produce highly significant correlations (R2 values of 0.50 to 0.60 with p-values of 0.004 to < 0.001) between sand peak values and flood peak discharges, indicating that flood magnitude can be reliably estimated. In summary, bottomland overbank deposits can provide excellent continuous records of paleofloods when the following conditions are met: 1) Stable depositional sites should be chosen; 2) Analysis should concentrate on the coarse tails of particle-size distributions; 3) Sampling of sediment intervals should achieve annual or better resolution; 4) Time-series data of particle-size should be detrended to minimize variation from dynamic aspects of fluvial sedimentation that are not related to flood magnitude; and 5) Multiple sites should be chosen to allow for replication of findings.

Active and legacy mining in an arid urban environment: challenges and perspectives for Copiapó, Northern Chile.

PubMed

Carkovic, Athena B; Calcagni, Magdalena S; Vega, Alejandra S; Coquery, Marina; Moya, Pablo M; Bonilla, Carlos A; Pastén, Pablo A

2016-08-01

Urban expansion in areas of active and legacy mining imposes a sustainability challenge, especially in arid environments where cities compete for resources with agriculture and industry. The city of Copiapó, with 150,000 inhabitants in the Atacama Desert, reflects this challenge. More than 30 abandoned tailings from legacy mining are scattered throughout its urban and peri-urban area, which include an active copper smelter. Despite the public concern generated by the mining-related pollution, no geochemical information is currently available for Copiapó, particularly for metal concentration in environmental solid phases. A geochemical screening of soils (n = 42), street dusts (n = 71) and tailings (n = 68) was conducted in November 2014 and April 2015. Organic matter, pH and elemental composition measurements were taken. Notably, copper in soils (60-2120 mg/kg) and street dusts (110-10,200 mg/kg) consistently exceeded international guidelines for residential and industrial use, while a lower proportion of samples exceeded international guidelines for arsenic, zinc and lead. Metal enrichment occurred in residential, industrial and agricultural areas near tailings and the copper smelter. This first screening of metal contamination sets the basis for future risk assessments toward defining knowledge-based policies and urban planning. Challenges include developing: (1) adequate intervention guideline values; (2) appropriate geochemical background levels for key metals; (3) urban planning that considers contaminated areas; (4) cost-effective control strategies for abandoned tailings in water-scarce areas; and (5) scenarios and technologies for tailings reprocessing. Assessing urban geochemical risks is a critical endeavor for areas where extreme events triggered by climate change are likely, as the mud flooding that impacted Copiapó in late March 2015.

A HYDRODYNAMICAL SOLUTION FOR THE ''TWIN-TAILED'' COLLIDING GALAXY CLUSTER ''EL GORDO''

DOE Office of Scientific and Technical Information (OSTI.GOV)

Molnar, Sandor M.; Broadhurst, Tom, E-mail: sandor@phys.ntu.edu.tw

The distinctive cometary X-ray morphology of the recently discovered massive galaxy cluster ''El Gordo'' (ACT-CT J0102–4915; z = 0.87) indicates that an unusually high-speed collision is ongoing between two massive galaxy clusters. A bright X-ray ''bullet'' leads a ''twin-tailed'' wake, with the Sunyaev-Zel'dovich (SZ) centroid at the end of the northern tail. We show how the physical properties of this system can be determined using our FLASH-based, N-body/hydrodynamic model, constrained by detailed X-ray, SZ, and Hubble lensing and dynamical data. The X-ray morphology and the location of the two dark matter components and the SZ peak are accurately described by amore » simple binary collision viewed about 480 million years after the first core passage. We derive an impact parameter of ≅300 kpc, and a relative initial infall velocity of ≅2250 km s{sup –1} when separated by the sum of the two virial radii assuming an initial total mass of 2.15 × 10{sup 15} M {sub ☉} and a mass ratio of 1.9. Our model demonstrates that tidally stretched gas accounts for the northern X-ray tail along the collision axis between the mass peaks, and that the southern tail lies off axis, comprising compressed and shock heated gas generated as the less massive component plunges through the main cluster. The challenge for ΛCDM will be to find out if this physically extreme event can be plausibly accommodated when combined with the similarly massive, high-infall-velocity case of the Bullet cluster and other such cases being uncovered in new SZ based surveys.« less

In vitro models of tail contraction and cytoplasmic streaming in amoeboid cells.

PubMed

Janson, L W; Taylor, D L

1993-10-01

We have developed a reconstituted gel-sol and contractile model system that mimics the structure and dynamics found at the ectoplasm/endoplasm interface in the tails of many amoeboid cells. We tested the role of gel-sol transformations of the actin-based cytoskeleton in the regulation of contraction and in the generation of endoplasm from ectoplasm. In a model system with fully phosphorylated myosin II, we demonstrated that either decreasing the actin filament length distribution or decreasing the extent of actin filament cross-linking initiated both a weakening of the gel strength and contraction. However, streaming of the solated gel components occurred only under conditions where the length distribution of actin was decreased, causing a self-destruct process of continued solation and contraction of the gel. These results offer significant support that gel strength plays an important role in the regulation of actin/myosin II-based contractions of the tail cortex in many amoeboid cells as defined by the solation-contraction coupling hypothesis (Taylor, D. L., and M. Fechheimer. 1982. Phil. Trans. Soc. Lond. B. 299:185-197). The competing processes of solation and contraction of the gel would appear to be mutually exclusive. However, it is the temporal-spatial balance of the rate and extent of two stages of solation, coupled to contraction, that can explain the conversion of gelled ectoplasm in the tail to a solated endoplasm within the same small volume, generation of a force for the retraction of tails, maintenance of cell polarity, and creation of a positive hydrostatic pressure to push against the newly formed endoplasm. The mechanism of solation-contraction of cortical cytoplasm may be a general component of the normal movement of a variety of amoeboid cells and may also be a component of other contractile events such as cytokinesis.

Linking bovine tuberculosis on cattle farms to white-tailed deer and environmental variables using Bayesian hierarchical analysis

USGS Publications Warehouse

Walter, W. David; Smith, Rick; Vanderklok, Mike; VerCauterren, Kurt C.

2014-01-01

Bovine tuberculosis is a bacterial disease caused by Mycobacterium bovis in livestock and wildlife with hosts that include Eurasian badgers (Meles meles), brushtail possum (Trichosurus vulpecula), and white-tailed deer (Odocoileus virginianus). Risk-assessment efforts in Michigan have been initiated on farms to minimize interactions of cattle with wildlife hosts but research onM. bovis on cattle farms has not investigated the spatial context of disease epidemiology. To incorporate spatially explicit data, initial likelihood of infection probabilities for cattle farms tested for M. bovis, prevalence of M. bovis in white-tailed deer, deer density, and environmental variables for each farm were modeled in a Bayesian hierarchical framework. We used geo-referenced locations of 762 cattle farms that have been tested for M. bovis, white-tailed deer prevalence, and several environmental variables that may lead to long-term survival and viability of M. bovis on farms and surrounding habitats (i.e., soil type, habitat type). Bayesian hierarchical analyses identified deer prevalence and proportion of sandy soil within our sampling grid as the most supported model. Analysis of cattle farms tested for M. bovisidentified that for every 1% increase in sandy soil resulted in an increase in odds of infection by 4%. Our analysis revealed that the influence of prevalence of M. bovis in white-tailed deer was still a concern even after considerable efforts to prevent cattle interactions with white-tailed deer through on-farm mitigation and reduction in the deer population. Cattle farms test positive for M. bovis annually in our study area suggesting that the potential for an environmental source either on farms or in the surrounding landscape may contributing to new or re-infections with M. bovis. Our research provides an initial assessment of potential environmental factors that could be incorporated into additional modeling efforts as more knowledge of deer herd factors and cattle farm prevalence is documented.

Identification of chromosomal locations associated with tail biting and being a victim of tail-biting behaviour in the domestic pig (Sus scrofa domesticus).

PubMed

Wilson, Kaitlin; Zanella, Ricardo; Ventura, Carlos; Johansen, Hanne Lind; Framstad, Tore; Janczak, Andrew; Zanella, Adroaldo J; Neibergs, Holly Louise

2012-11-01

The objective of this study was to identify loci associated with tail biting or being a victim of tail biting in Norwegian crossbred pigs using a genome-wide association study with PLINK case-control analysis. DNA was extracted from hair or blood samples collected from 98 trios of crossbred pigs located across Norway. Each trio came from the same pen and consisted of one pig observed to initiate tail biting, one pig which was the victim of tail biting and a control pig which was not involved in either behaviour. DNA was genotyped using the Illumina PorcineSNP60 BeadChip whole-genome single-nucleotide polymorphism (SNP) assay. After quality assurance filtering, 53,952 SNPs remained comprising 74 animals (37 pairs) for the tail biter versus control comparison and 53,419 SNPs remained comprising 80 animals (40 pairs) for the victim of tail biting versus control comparison. An association with being a tail biter was observed on Sus scrofa chromosome 16 (SSC16; p = 1.6 × 10(-5)) and an unassigned chromosome (p = 3.9 × 10(-5)). An association with being the victim of tail biting was observed on Sus scrofa chromosomes 1 (SSC1; p = 4.7 × 10(-5)), 9 (SSC9; p = 3.9 × 10(-5)), 18 (SSC18; p = 7 × 10(-5) for 9,602,511 bp, p = 3.4 × 10(-5) for 9,653,881 bp and p = 5.3 × 10(-5) for 29,577,783 bp) and an unassigned chromosome (p = 6.1 × 10(-5)). An r(2) = 0.96 and a D' = 1 between the two SNPs at 9 Mb on SSC18 indicated extremely high linkage disequilibrium, suggesting that these two markers represent a single locus. These results provide evidence of a moderate genetic association between the propensity to participate in tail-biting behaviour and the likelihood of becoming a victim of this behaviour.

The timeline of the lunar bombardment: Revisited

NASA Astrophysics Data System (ADS)

Morbidelli, A.; Nesvorny, D.; Laurenz, V.; Marchi, S.; Rubie, D. C.; Elkins-Tanton, L.; Wieczorek, M.; Jacobson, S.

2018-05-01

The timeline of the lunar bombardment in the first Gy of Solar System history remains unclear. Basin-forming impacts (e.g. Imbrium, Orientale), occurred 3.9-3.7 Gy ago, i.e. 600-800 My after the formation of the Moon itself. Many other basins formed before Imbrium, but their exact ages are not precisely known. There is an intense debate between two possible interpretations of the data: in the cataclysm scenario there was a surge in the impact rate approximately at the time of Imbrium formation, while in the accretion tail scenario the lunar bombardment declined since the era of planet formation and the latest basins formed in its tail-end. Here, we revisit the work of Morbidelli et al. (2012) that examined which scenario could be compatible with both the lunar crater record in the 3-4 Gy period and the abundance of highly siderophile elements (HSE) in the lunar mantle. We use updated numerical simulations of the fluxes of asteroids, comets and planetesimals leftover from the planet-formation process. Under the traditional assumption that the HSEs track the total amount of material accreted by the Moon since its formation, we conclude that only the cataclysm scenario can explain the data. The cataclysm should have started ∼ 3.95 Gy ago. However we also consider the possibility that HSEs are sequestered from the mantle of a planet during magma ocean crystallization, due to iron sulfide exsolution (O'Neil, 1991; Rubie et al., 2016). We show that this is likely true also for the Moon, if mantle overturn is taken into account. Based on the hypothesis that the lunar magma ocean crystallized about 100-150 My after Moon formation (Elkins-Tanton et al., 2011), and therefore that HSEs accumulated in the lunar mantle only after this timespan, we show that the bombardment in the 3-4 Gy period can be explained in the accretion tail scenario. This hypothesis would also explain why the Moon appears so depleted in HSEs relative to the Earth. We also extend our analysis of the cataclysm and accretion tail scenarios to the case of Mars. The accretion tail scenario requires a global resurfacing event on Mars ∼ 4.4 Gy ago, possibly associated with the formation of the Borealis basin, and it is consistent with the HSE budget of the planet. Moreover it implies that the Noachian and pre-Noachian terrains are ∼ 200 My older than usually considered.

The analysis of axisymmetric viscoelasticity, time-dependent recovery, and hydration in rat tail intervertebral discs by radial compression test.

PubMed

Lin, Leou-Chyr; Hedman, Thomas P; Wang, Shyu-Jye; Huoh, Michael; Chang, Shih-Youeng

2009-05-01

The goal of this study was to develop a nondestructive radial compression technique and to investigate the viscoelastic behavior of the rat tail disc under repeated radial compression. Rat tail intervertebral disc underwent radial compression relaxation testing and creep testing using a custom-made gravitational creep machine. The axisymmetric viscoelasticity and time-dependent recovery were determined. Different levels of hydration (with or without normal saline spray) were supplied to evaluate the effect of changes in viscoelastic properties. Viscoelasticity was found to be axisymmetric in rat-tail intervertebral discs at four equidistant locations. Complete relaxation recovery was found to take 20 min, whereas creep recovery required 25 min. Hydration was required for obtaining viscoelastic axisymmetry and complete viscoelastic recovery.

New evidence from China for the nature of the pterosaur evolutionary transition

NASA Astrophysics Data System (ADS)

Wang, Xiaoli; Jiang, Shunxing; Zhang, Junqiang; Cheng, Xin; Yu, Xuefeng; Li, Yameng; Wei, Guangjin; Wang, Xiaolin

2017-02-01

Pterosaurs are extinct flying reptiles, the first vertebrates to achieve powered flight. Our understanding of the evolutionary transition between basal, predominantly long-tailed forms to derived short-tailed pterodactyloids remained poor until the discovery of Wukongopterus and Darwinopterus in western Liaoning, China. In this paper we report on a new genus and species, Douzhanopterus zhengi, that has a reduced tail, 173% the length of the humerus, and a reduced fifth pedal digit, whose first phalange is ca. 20% the length of metatarsal III, both unique characters to Monofenestra. The morphological comparisons and phylogenetic analysis presented in this paper demonstrate that Douzhanopterus is the sister group to the ‘Painten pro-pterodactyloid’ and the Pterodactyloidea, reducing the evolutionary gap between long- and short-tailed pterosaurs.

Measurement and Analysis of Wing and Tail Buffeting Loads on a Fighter Airplane

NASA Technical Reports Server (NTRS)

Huston, Wilber B; Skopinski, T H

1955-01-01

The buffeting loads measured on the wing and tail of a fighter airplane during 194 maneuvers are given in tabular form, along with the associated flight conditions. Measurements were made at altitudes of 30,000 to 10,000 feet and at speeds up to a Mach number of 0.8. Least-squares methods have been used for a preliminary analysis of the data. The agreement between the results of this analysis and the loads measured in stalls is sufficiently good to suggest the examination of the buffeting of other airplanes on the same basis.

The juxtamembrane domain of the E-cadherin cytoplasmic tail contributes to its interaction with Myosin VI

PubMed Central

Mangold, Sabine; Norwood, Suzanne J.; Yap, Alpha S.; Collins, Brett M.

2012-01-01

We recently identified the atypical myosin, Myosin VI, as a component of epithelial cell-cell junctions that interacts with E-cadherin. Recombinant proteins bearing the cargo-binding domain of Myosin VI (Myo VI-CBD) or the cytoplasmic tail of E-cadherin can interact directly with one another. In this report we further investigate the molecular requirements of the interaction between Myo VI-CBD and E-cadherin combining truncation mutation analysis with in vitro binding assays. We report that a short (28 amino acid) juxtamembrane region of the cadherin cytoplasmic tail is sufficient to bind Myo VI-CBD. However, central regions of the cadherin tail adjacent to the juxtamembrane sequence also display binding activity for Myo VI-CBD. It is therefore possible that the cadherin tail bears two binding sites for Myosin VI, or an extended binding site that includes the juxtamembrane region. Nevertheless, our biochemical data highlight the capacity for the juxtamembrane region to interact with functionally-significant cytoplasmic proteins. PMID:23007415

Does climate have heavy tails?

NASA Astrophysics Data System (ADS)

Bermejo, Miguel; Mudelsee, Manfred

2013-04-01

When we speak about a distribution with heavy tails, we are referring to the probability of the existence of extreme values will be relatively large. Several heavy-tail models are constructed from Poisson processes, which are the most tractable models. Among such processes, one of the most important are the Lévy processes, which are those process with independent, stationary increments and stochastic continuity. If the random component of a climate process that generates the data exhibits a heavy-tail distribution, and if that fact is ignored by assuming a finite-variance distribution, then there would be serious consequences (in the form, e.g., of bias) for the analysis of extreme values. Yet, it appears that it is an open question to what extent and degree climate data exhibit heavy-tail phenomena. We present a study about the statistical inference in the presence of heavy-tail distribution. In particular, we explore (1) the estimation of tail index of the marginal distribution using several estimation techniques (e.g., Hill estimator, Pickands estimator) and (2) the power of hypothesis tests. The performance of the different methods are compared using artificial time-series by means of Monte Carlo experiments. We systematically apply the heavy tail inference to observed climate data, in particular we focus on time series data. We study several proxy and directly observed climate variables from the instrumental period, the Holocene and the Pleistocene. This work receives financial support from the European Commission (Marie Curie Initial Training Network LINC, No. 289447, within the 7th Framework Programme).

Fractal and Chaos Analysis for Dynamics of Radon Exhalation from Uranium Mill Tailings

NASA Astrophysics Data System (ADS)

Li, Yongmei; Tan, Wanyu; Tan, Kaixuan; Liu, Zehua; Xie, Yanshi

2016-08-01

Tailings from mining and milling of uranium ores potentially are large volumes of low-level radioactive materials. A typical environmental problem associated with uranium tailings is radon exhalation, which can significantly pose risks to environment and human health. In order to reduce these risks, it is essential to study the dynamical nature and underlying mechanism of radon exhalation from uranium mill tailings. This motivates the conduction of this study, which is based on the fractal and chaotic methods (e.g. calculating the Hurst exponent, Lyapunov exponent and correlation dimension) and laboratory experiments of the radon exhalation rates. The experimental results show that the radon exhalation rate from uranium mill tailings is highly oscillated. In addition, the nonlinear analyses of the time series of radon exhalation rate demonstrate the following points: (1) the value of Hurst exponent much larger than 0.5 indicates non-random behavior of the radon time series; (2) the positive Lyapunov exponent and non-integer correlation dimension of the time series imply that the radon exhalation from uranium tailings is a chaotic dynamical process; (3) the required minimum number of variables should be five to describe the time evolution of radon exhalation. Therefore, it can be concluded that the internal factors, including heterogeneous distribution of radium, and randomness of radium decay, as well as the fractal characteristics of the tailings, can result in the chaotic evolution of radon exhalation from the tailings.

Plasma Heating and Flow in an Auroral Arc

NASA Technical Reports Server (NTRS)

Moore, T. E.; Chandler, M. O.; Pollock, C. J.; Reasoner, D. L.; Arnoldy, R. L.; Austin, B.; Kintner, P. M.; Bonnell, J.

1996-01-01

We report direct observations of the three-dimensional velocity distribution of selected topside ionospheric ion species in an auroral context between 500 and 550 km altitude. We find heating transverse to the local magnetic field in the core plasma, with significant heating of 0(+), He(+), and H(+), as well as tail heating events that occur independently of the core heating. The 0(+) velocity distribution departs from bi-Maxwellian, at one point exhibiting an apparent ring-like shape. However, these observations are shown to be aliased within the auroral arc by temporal variations that arc not well-resolved by the core plasma instrument. The dc electric field measurements reveal superthermal plasma drifts that are consistent with passage of the payload through a series of vortex structures or a larger scale circularly polarized hydromagnetic wave structure within the auroral arc. The dc electric field also shows that impulsive solitary structures, with a frequency spectrum in the ion cyclotron frequency range, occur in close correlation with the tail heating events. The drift and core heating observations lend support to the idea that core ion heating is driven at low altitudes by rapid convective motions imposed by the magnetosphere. Plasma wave emissions at ion frequencies and parallel heating of the low-energy electron plasma are observed in conjunction with this auroral form; however, the conditions are much more complex than those typically invoked in previous theoretical treatments of superthermal frictional heating. The observed ion heating within the arc clearly exceeds that expected from frictional heating for the light ion species H(+) and He(+), and the core distributions also contain hot transverse tails, indicating an anomalous transverse heat source.

Knowledge Integration and Use-Case Analysis for a Customized Drug-Drug Interaction CDS Service

NASA Astrophysics Data System (ADS)

Kam, Hye Jin; Park, Man Young; Kim, Woojae; Yoon, Duk Yong; Ahn, Eun Kyoung; Park, Rae Woong

Clinical decision support systems (CDSSs) are thought to reduce adverse drug events (ADEs) by monitoring drug-drug interactions(DDIs). However, clinically improper or excessive alerts can result in high alert overrides. A tailored CDS service, which is appropriate for clinicians and their ordering situations, is required to increase alert acceptance. In this study, we conducted a 12-week pilot project adopting a tailed CDSS at an emergency department. The new CDSS was conducted via a stepwise integration of additional new rules. The alert status with changes in acceptance rate was analyzed. The most frequent DDI alerts were related to prescriptions of anti-inflammatory drugs. The percentages of alert overrides for each stage were 98.0%, 96.0%, 96.9%, and 98.1%, respectively. 91.5% of overridden alerts were related to discharge medications. To reduce the potential hazards of ADEs, the development of an effective customized DDI CDSS is required, via in-depth analysis on alert patterns and overridden reasons.

Superlinear scaling of offspring at criticality in branching processes

NASA Astrophysics Data System (ADS)

Saichev, A.; Sornette, D.

2014-01-01

For any branching process, we demonstrate that the typical total number rmp(ντ) of events triggered over all generations within any sufficiently large time window τ exhibits, at criticality, a superlinear dependence rmp(ντ)˜(ντ)γ (with γ >1) on the total number ντ of the immigrants arriving at the Poisson rate ν. In branching processes in which immigrants (or sources) are characterized by fertilities distributed according to an asymptotic power-law tail with tail exponent 1<γ ⩽2, the exponent of the superlinear law for rmp(ντ) is identical to the exponent γ of the distribution of fertilities. For γ >2 and for standard branching processes without power-law distribution of fertilities, rmp(ντ)˜(ντ)2. This scaling law replaces and tames the divergence ντ /(1-n) of the mean total number R¯t(τ) of events, as the branching ratio (defined as the average number of triggered events of first generation per source) tends to 1. The derivation uses the formalism of generating probability functions. The corresponding prediction is confirmed by numerical calculations, and an heuristic derivation enlightens its underlying mechanism. We also show that R¯t(τ) is always linear in ντ even at criticality (n =1). Our results thus illustrate the fundamental difference between the mean total number, which is controlled by a few extremely rare realizations, and the typical behavior represented by rmp(ντ).

Heavy-tailed distribution of cyber-risks

NASA Astrophysics Data System (ADS)

Maillart, T.; Sornette, D.

2010-06-01

With the development of the Internet, new kinds of massive epidemics, distributed attacks, virtual conflicts and criminality have emerged. We present a study of some striking statistical properties of cyber-risks that quantify the distribution and time evolution of information risks on the Internet, to understand their mechanisms, and create opportunities to mitigate, control, predict and insure them at a global scale. First, we report an exceptionnaly stable power-law tail distribution of personal identity losses per event, Pr(ID loss ≥ V) ~ 1/Vb, with b = 0.7 ± 0.1. This result is robust against a surprising strong non-stationary growth of ID losses culminating in July 2006 followed by a more stationary phase. Moreover, this distribution is identical for different types and sizes of targeted organizations. Since b < 1, the cumulative number of all losses over all events up to time t increases faster-than-linear with time according to ≃ t1/b, suggesting that privacy, characterized by personal identities, is necessarily becoming more and more insecure. We also show the existence of a size effect, such that the largest possible ID losses per event grow faster-than-linearly as ~S1.3 with the organization size S. The small value b ≃ 0.7 of the power law distribution of ID losses is explained by the interplay between Zipf’s law and the size effect. We also infer that compromised entities exhibit basically the same probability to incur a small or large loss.

Small scale turbidity currents in a tectonically active submarine graben, the Gulf of Corinth (Greece): their significance in dispersing mine tailings and their relevance to basin filling

NASA Astrophysics Data System (ADS)

Papatheodorou, G.; Stefatos, A.; Christodoulou, D.; Ferentinos, G.

2003-04-01

The Gulf of Corinth is an intra-plate active graben within the Aegean microplate, which is characterized by high frequency occurrence of gravitative mass movements. A detailed marine survey in Antikyra bay, on the northern margin of the graben, was carried out (i) to study the bathymetry and morphology of the seafloor and (ii) to examine the distribution and dispersion of bauxite “red-mud” tailings and the formation of present-day fine grained, thin bedded turbidites. The examination of high resolution seismic profiles has shown that the northern flank of the gulf of Corinth consists of the shelf, slope and basin floor. The shelf has an average width of 10 km and dips very gently at a gradient less than 1.2o to a depth of 300m. The slope extends from the 300m to the 700m isobath with a gradient ranging from 5o to 7.5o. The basin floor deeper than the 700m isobath is flat with a gradient less than 0.1o. The shelf break and upper slope are affected by mass-movements. The seafloor on slope is incised by numerous channels trending in a NNE-SSW direction. The floor of the plain is covered by ponded turbidites. The analysis of cores based on (i) the texture and the structure of the individual layers of the surficial sedimentary cover and (ii) the tracing of bauxite red-mud tailing which have been discharged since 1970 on the upper shelf of the Antikyra Bay, have shown that: (i) Shelf and upper slope sediments are transported to the basin floor by turbidity flows. (ii) The slope surface is affected by the erosional action of the turbidity currents. (iii) The basin floor is covered by thin-bedded fine-grained turbidites whose thickness ranges from 0.8-4 cm. (iv) The individual turbidite beds, which consist of silt and clay, are structureless and are separated by sharp, planar or erosional contacts. (v) Hemipelagic intercalations are absent. The number of turbiditic events recorded in the surveyed area is from 2-5 events over a period of 15 years or 122 to 333 events per 1000 years. Each turbidite is usually lobe shaped and has an areal coverage from 4 to 12 km2. The turbidites overlap and cover a total area of 48 km2. The total thickness of the turbidites deposited during this period was between 5 and 12 cm which indicate sedimentation rates from 320 to 800 cm per 1000 years. The turbidites form a sedimentary body over the surveyed area whose volume is conservatively estimated at 35 x 10-5 km3. The high sedimentation rates and the high frequency of turbiditic events suggest that they play an important role in the filling of seismically active basins and that their volumetric contribution to basin infill is comparable to that of megaturbidites.

Risk finance for catastrophe losses with Pareto-calibrated Lévy-stable severities.

PubMed

Powers, Michael R; Powers, Thomas Y; Gao, Siwei

2012-11-01

For catastrophe losses, the conventional risk finance paradigm of enterprise risk management identifies transfer, as opposed to pooling or avoidance, as the preferred solution. However, this analysis does not necessarily account for differences between light- and heavy-tailed characteristics of loss portfolios. Of particular concern are the decreasing benefits of diversification (through pooling) as the tails of severity distributions become heavier. In the present article, we study a loss portfolio characterized by nonstochastic frequency and a class of Lévy-stable severity distributions calibrated to match the parameters of the Pareto II distribution. We then propose a conservative risk finance paradigm that can be used to prepare the firm for worst-case scenarios with regard to both (1) the firm's intrinsic sensitivity to risk and (2) the heaviness of the severity's tail. © 2012 Society for Risk Analysis.

Interpreting atom probe data from chromium oxide scales.

PubMed

La Fontaine, Alexandre; Gault, Baptiste; Breen, Andrew; Stephenson, Leigh; Ceguerra, Anna V; Yang, Limei; Nguyen, Thuan Dinh; Zhang, Jianqiang; Young, David J; Cairney, Julie M

2015-12-01

Picosecond-pulsed ultraviolet-laser (UV-355 nm) assisted atom probe tomography (APT) was used to analyze protective, thermally grown chromium oxides formed on stainless steel. The influence of analysis parameters on the thermal tail observed in the mass spectra and the chemical composition is investigated. A new parameter termed "laser sensitivity factor" is introduced in order to quantify the effect of laser energy on the extent of the thermal tail. This parameter is used to compare the effect of increasing laser energy on thermal tails in chromia and chromite samples. Also explored is the effect of increasing laser energy on the measured oxygen content and the effect of specimen base temperature and laser pulse frequency on the mass spectrum. Finally, we report a preliminary analysis of molecular ion dissociations in chromia. Copyright © 2015 Elsevier B.V. All rights reserved.

Ultratrace LC-MS/MS analysis of segmented calf hair for retrospective assessment of time of clenbuterol administration in Agriforensics.

PubMed

Duvivier, Wilco F; van Beek, Teris A; Meijer, Thijs; Peeters, Ruth J P; Groot, Maria J; Sterk, Saskia S; Nielen, Michel W F

2015-01-21

In agriforensics, time of administration is often debated when illegal drug residues, such as clenbuterol, are found in frequently traded cattle. In this proof-of-concept work, the feasibility of obtaining retrospective timeline information from segmented calf tail hair analyses has been studied. First, an ultraperformance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) hair analysis method was adapted to accommodate smaller sample sizes and in-house validated. Then, longitudinal 1 cm segments of calf tail hair were analyzed to obtain clenbuterol concentration profiles. The profiles found were in good agreement with calculated, theoretical positions of the clenbuterol residues along the hair. Following assessment of the average growth rate of calf tail hair, time of clenbuterol administration could be retrospectively determined from segmented hair analysis data. The data from the initial animal treatment study (n = 2) suggest that time of treatment can be retrospectively estimated with an error of 3-17 days.

Metallicity gradients in tidal tails and merging systems

NASA Astrophysics Data System (ADS)

Torres-Flores, S.; Scarano, S., Jr.; Olave, D.; Alfaro, M.; Mendes de Oliveira, C.; de Mello, D. F.; Carrasco, E. R.; Amram, P.; Plana, H.

2014-10-01

We present an analysis of the metal distribution in the tidal tails of two interacting systems and in the main body of a galaxy merger: NGC92, NGC6845 and HCG31, respectively. Using Gemini/GMOS spectroscopic data, we found no metallicity gradients for the tail of NGC92. The abundances in the tail are similar to the values displayed by the central regions of NGC92. This fact suggests that gas mixing triggered by the interaction produces a flattening in the metallicity distribution of this system. For the system NGC6845, we found that regions located in the tail have similar abundances to one source located in the inner region of this galaxy, also suggesting a flat metal distribution. For HCG 31 we found an inhomogeneous metal distribution for the central region. Apparently, each star forming complex keeps its metal abundance despite the strong gravitational interaction that this system suffered. In the case of the tidal tails, our results support the scenario in which gas mixing produces a flattening in the metal distribution. However, we suggest that the star formation is an important mechanism in enhancing the oxygen abundance of these structures.

Strain of optic-fiber/giant magnetostrictive film structure in magnetic field by finite element analysis

NASA Astrophysics Data System (ADS)

Hu, Jiafei; Pan, Mengchun; Xin, Jianguang; Chen, Dixiang

2008-12-01

The magnetostrictive transducer is the most important part of the optic-fiber magnetic field sensor, and the optic-fiber/giant magnetostrictive(GMS) film coupled structure is a novel coupling form of the magnetostrictive transducer. Always we analyze the coupled structure based on the entire coupled structure being sputtered GMS material without tail-fibers. In practical application, the coupled structure has tail-fibers without films at two ends. When the entire coupled structure is immersed in the detected magnetic field, the detected magnetic field causes the GMS film strain then causing optic-fiber strain. This strain transmission process is different from it in the coupled structure entirely with GMS films without tail-fibers. The strain transmission relationship can be calculated theoretically in the coupled structure without tail-fibers, but it's complicated to theoretically calculate the strain transmission relationship in the coupled structure with tail-fibers. After large numbers of calculations and analyses by ANSYS software, we figure out some relationships of the two strain transmission processes in the respective structures and the stress distribution in the tail-fibers. These results are helpful to the practical application of the optic-fiber/ GMS film coupled structure.

Med5(Nut1) and Med17(Srb4) Are Direct Targets of Mediator Histone H4 Tail Interactions

PubMed Central

Liu, Zhongle; Myers, Lawrence C.

2012-01-01

The Mediator complex transmits activation signals from DNA bound transcription factors to the core transcription machinery. In addition to its canonical role in transcriptional activation, recent studies have demonstrated that S. cerevisiae Mediator can interact directly with nucleosomes, and their histone tails. Mutations in Mediator subunits have shown that Mediator and certain chromatin structures mutually impact each other structurally and functionally in vivo. We have taken a UV photo cross-linking approach to further delineate the molecular basis of Mediator chromatin interactions and help determine whether the impact of certain Mediator mutants on chromatin is direct. Specifically, by using histone tail peptides substituted with an amino acid analog that is a UV activatible crosslinker, we have identified specific subunits within Mediator that participate in histone tail interactions. Using Mediator purified from mutant yeast strains we have evaluated the impact of these subunits on histone tail binding. This analysis has identified the Med5 subunit of Mediator as a target for histone tail interactions and suggests that the previously observed effect of med5 mutations on telomeric heterochromatin and silencing is direct. PMID:22693636

Entropy-based heavy tailed distribution transformation and visual analytics for monitoring massive network traffic

NASA Astrophysics Data System (ADS)

Han, Keesook J.; Hodge, Matthew; Ross, Virginia W.

2011-06-01

For monitoring network traffic, there is an enormous cost in collecting, storing, and analyzing network traffic datasets. Data mining based network traffic analysis has a growing interest in the cyber security community, but is computationally expensive for finding correlations between attributes in massive network traffic datasets. To lower the cost and reduce computational complexity, it is desirable to perform feasible statistical processing on effective reduced datasets instead of on the original full datasets. Because of the dynamic behavior of network traffic, traffic traces exhibit mixtures of heavy tailed statistical distributions or overdispersion. Heavy tailed network traffic characterization and visualization are important and essential tasks to measure network performance for the Quality of Services. However, heavy tailed distributions are limited in their ability to characterize real-time network traffic due to the difficulty of parameter estimation. The Entropy-Based Heavy Tailed Distribution Transformation (EHTDT) was developed to convert the heavy tailed distribution into a transformed distribution to find the linear approximation. The EHTDT linearization has the advantage of being amenable to characterize and aggregate overdispersion of network traffic in realtime. Results of applying the EHTDT for innovative visual analytics to real network traffic data are presented.

Head space analysis to non-invasively distinguish between vaccinated and bovine tuberculosis-infected white-tailed deer

USDA-ARS?s Scientific Manuscript database

White-tailed deer (WTD; Odocoileus virginianus) can act as a reservoir for bovine tuberculosis (bTB), caused by Mycobacterium bovis, and can be a source of infection in cattle. Presently, no method exists to noninvasively monitor the presence of bTB in wildlife. In addition, due to similarities betw...

The flotation tailings of the former Pb-Zn mine of Touiref (NW Tunisia): mineralogy, mine drainage prediction, base-metal speciation assessment and geochemical modeling.

PubMed

Othmani, Mohamed Ali; Souissi, Fouad; Bouzahzah, Hassan; Bussière, Bruno; da Silva, Eduardo Ferreira; Benzaazoua, Mostafa

2015-02-01

The underground extraction of Pb-Zn mineralization in the Touiref area stopped in 1958. A large volume of flotation tailings (more than 500 Mt) containing sulfides were deposited in a tailings impoundment. The goals of this study are to evaluate the neutralization capacity of the unoxidized and oxidized tailings, to assess the speciation of metals between the different components of the tailings material, and to assess the mobility of metals and the secondary minerals' precipitation in pore waters using geochemical modeling. To accomplish these objectives, representative samples from both fresh and oxidized zones were collected along a vertical profile through the tailings pile. Physical, chemical (ICP-MS), and mineralogical characterization (X-ray diffraction (XRD), reflected light microscopy, scanning electron microscope (SEM)) of these samples was performed. Grain size analysis shows that the tailings are dominated by silt- to sand-sized fractions. The microscopic observation highlights the presence of pyrite, marcasite, galena, and sphalerite as primary minerals in a carbonated matrix. The study reveals also the presence of secondary minerals represented by cerussite, smithsonite, anglesite, and Fe oxi-hydroxides as important scavengers for trace elements. The static tests show that the presence of calcite in the tailing samples ensures acid-neutralizing capacity (ANC), which is significantly greater than the acidity potential (PA). The geochemical characterization of the unoxidized samples shows higher Cd, Pb, and Zn concentrations than the oxidized samples containing the highest values for Fe and SO4. Sequential extraction tests show that significant percentages of metals are distributed between the acid-soluble fractions (Cd, Pb, and Zn) and the reducible one (Zn). Pore water analysis indicates that Ca is the dominant cation (8,170 and 6,200 mg L(-1), respectively), whereas sulfate is the principal anion (6,900 and 5,100 mg L(-1), respectively). Saturation index (SI) calculations of minerals in pore water extracted from both the oxidized and unoxidized samples are indicative of gypsum (SI >0) and Fe(III) oxides (SI ≫0) precipitation. The latter controls the Fe concentration in solution.

Estimating extreme losses for the Florida Public Hurricane Model—part II

NASA Astrophysics Data System (ADS)

Gulati, Sneh; George, Florence; Hamid, Shahid

2018-02-01

Rising global temperatures are leading to an increase in the number of extreme events and losses (http://www.epa.gov/climatechange/science/indicators/). Accurate estimation of these extreme losses with the intention of protecting themselves against them is critical to insurance companies. In a previous paper, Gulati et al. (2014) discussed probable maximum loss (PML) estimation for the Florida Public Hurricane Loss Model (FPHLM) using parametric and nonparametric methods. In this paper, we investigate the use of semi-parametric methods to do the same. Detailed analysis of the data shows that the annual losses from FPHLM do not tend to be very heavy tailed, and therefore, neither the popular Hill's method nor the moment's estimator work well. However, Pickand's estimator with threshold around the 84th percentile provides a good fit for the extreme quantiles for the losses.

A Phenotypic Screen in Zebrafish Identifies a Novel Small-Molecule Inducer of Ectopic Tail Formation Suggestive of Alterations in Non-Canonical Wnt/PCP Signaling

PubMed Central

Gebruers, Evelien; Cordero-Maldonado, María Lorena; Gray, Alexander I.; Clements, Carol; Harvey, Alan L.; Edrada-Ebel, Ruangelie; de Witte, Peter A. M.; Crawford, Alexander D.; Esguerra, Camila V.

2013-01-01

Zebrafish have recently emerged as an attractive model for the in vivo bioassay-guided isolation and characterization of pharmacologically active small molecules of natural origin. We carried out a zebrafish-based phenotypic screen of over 3000 plant-derived secondary metabolite extracts with the goal of identifying novel small-molecule modulators of the BMP and Wnt signaling pathways. One of the bioactive plant extracts identified in this screen – Jasminum gilgianum, an Oleaceae species native to Papua New Guinea – induced ectopic tails during zebrafish embryonic development. As ectopic tail formation occurs when BMP or non-canonical Wnt signaling is inhibited during the tail protrusion process, we suspected a constituent of this extract to act as a modulator of these pathways. A bioassay-guided isolation was carried out on the basis of this zebrafish phenotype, identifying para-coumaric acid methyl ester (pCAME) as the active compound. We then performed an in-depth phenotypic analysis of pCAME-treated zebrafish embryos, including a tissue-specific marker analysis of the secondary tails. We found pCAME to synergize with the BMP-inhibitors dorsomorphin and LDN-193189 in inducing ectopic tails, and causing convergence-extension defects in compound-treated embryos. These results indicate that pCAME may interfere with non-canonical Wnt signaling. Inhibition of Jnk, a downstream target of Wnt/PCP signaling (via morpholino antisense knockdown and pharmacological inhibition with the kinase inhibitor SP600125) phenocopied pCAME-treated embryos. However, immunoblotting experiments revealed pCAME to not directly inhibit Jnk-mediated phosphorylation of c-Jun, suggesting additional targets of SP600125, and/or other pathways, as possibly being involved in the ectopic tail formation activity of pCAME. Further investigation of pCAME’s mechanism of action will help determine this compound’s pharmacological utility. PMID:24349481

Covalent and non-covalent curcumin loading in acid-responsive polymeric micellar nanocarriers

NASA Astrophysics Data System (ADS)

Gao, Min; Chen, Chao; Fan, Aiping; Zhang, Ju; Kong, Deling; Wang, Zheng; Zhao, Yanjun

2015-07-01

Poor aqueous solubility, potential degradation, rapid metabolism and elimination lead to low bioavailability of pleiotropic impotent curcumin. Herein, we report two types of acid-responsive polymeric micelles where curcumin was encapsulated via both covalent and non-covalent modes for enhanced loading capacity and on-demand release. Biodegradable methoxy poly(ethylene glycol)-poly(lactic acid) copolymer (mPEG-PLA) was conjugated with curcumin via a hydrazone linker, generating two conjugates differing in architecture (single-tail versus double-tail) and free curcumin was encapsulated therein. The two micelles exhibited similar hydrodynamic size at 95 ± 3 nm (single-tail) and 96 ± 3 nm (double-tail), but their loading capacities differed significantly at 15.0 ± 0.5% (w/w) (single-tail) and 4.8 ± 0.5% (w/w) (double-tail). Under acidic sink conditions (pH 5.0 and 6.0), curcumin displayed a faster release from the single-tail nanocarrier, which was correlated to a low IC50 of 14.7 ± 1.6 (μg mL-1) compared to the value of double-tail micelle (24.9 ± 1.3 μg mL-1) in HeLa cells. The confocal imaging and flow cytometry analysis demonstrated a superior capability of single-tail micelle for intracellular curcumin delivery, which was a consequence of the higher loading capacity and lower degree of mPEG surface coverage. In conclusion, the dual loading mode is an effective means to increase the drug content in the micellar nanocarriers whose delivery efficiency is highly dependent on its polymer-drug conjugate architecture. This strategy offers an alternative nanoplatform for intracellularly delivering impotent hydrophobic agents (i.e. curcumin) in an efficient stimuli-triggered way, which is valuable for the enhancement of curcumin’s efficacy in managing a diverse range of disorders.

The Role of Histone Tails in the Nucleosome: A Computational Study

PubMed Central

Erler, Jochen; Zhang, Ruihan; Petridis, Loukas; Cheng, Xiaolin; Smith, Jeremy C.; Langowski, Jörg

2014-01-01

Histone tails play an important role in gene transcription and expression. We present here a systematic computational study of the role of histone tails in the nucleosome, using replica exchange molecular dynamics simulations with an implicit solvent model and different well-established force fields. We performed simulations for all four histone tails, H4, H3, H2A, and H2B, isolated and with inclusion of the nucleosome. The results confirm predictions of previous theoretical studies for the secondary structure of the isolated tails but show a strong dependence on the force field used. In the presence of the entire nucleosome for all force fields, the secondary structure of the histone tails is destabilized. Specific contacts are found between charged lysine and arginine residues and DNA phosphate groups and other binding sites in the minor and major DNA grooves. Using cluster analysis, we found a single dominant configuration of binding to DNA for the H4 and H2A histone tails, whereas H3 and H2B show multiple binding configurations with an equal probability. The leading stabilizing contribution for those binding configurations is the attractive interaction between the positively charged lysine and arginine residues and the negatively charged phosphate groups, and thus the resulting charge neutralization. Finally, we present results of molecular dynamics simulations in explicit solvent to confirm our conclusions. Results from both implicit and explicit solvent models show that large portions of the histone tails are not bound to DNA, supporting the complex role of these tails in gene transcription and expression and making them possible candidates for binding sites of transcription factors, enzymes, and other proteins. PMID:25517156

Couse white-tailed deer and desert cottontail in the southwestern oak savannas: Their presence before and after burning events

Treesearch

Peter F. Ffolliott; Hui Chen; Gerald J. Gottfried; Cody L. Stropki

2012-01-01

Coues white-tallied deer (Odocoileus virginianus couesi) and desert cottontail (Sylvilagus auduboni), also known as Audubon cottontail, are inhabits of oak savannas in the Southwestern Borderlands region. Food, cover, and scattered water for these two species are found in this comparatively open ecosystem. The results of a study on the presence (occurrence) of Coues...

Study of weak substorms observed during December 8, 1990, geospace environment modeling campaign: Timing of different types of substorm onsets

NASA Astrophysics Data System (ADS)

Mishin, V. M.; Russell, C. T.; Saifudinova, T. I.; Bazarzhapov, A. D.

2000-10-01

We define an expansion onset (synonymous with the main breakup) to be one with sufficient signatures of open tail reconnection. Earlier onsets, which we term initial onsets, occur before the expansion onset, without the signatures of open tail reconnection but with other signs of a clear substorm onset. These two types of substorm onsets and their timing are discussed herein in a study of selected substorm-like events. During the 10-hour interval studied, five impulses of the Perreault-Akasofu index ɛ were observed with comparable peak values. However, the observed magnetospheric responses were very different in terms of equatorward motion and poleward expansion of the auroral oval. We conclude that the occurrence either of an initial onset or of a full onset (under similar boundary conditions) depends on the amount of stored free energy, proportional to the tail length, which is controlled by the input power. The earlier or initial onset marks a sudden change in the convection pattern in the nightside. This onset could mark the initiation of reconnection on closed field lines while the expansion onset could mark the initiation of reconnection on open field lines.

Convection Constraints and Current Sheet Thinning During the Substorm Growth Phase

NASA Astrophysics Data System (ADS)

Otto, A.; Hsieh, M.

2012-12-01

A typical property during the growth phase of geomagnetic substorms is the thinning of the near-Earth current sheet, most pronounced in the region between 6 and 15 RE. We propose that the cause for this current sheet thinning is convection from the midnight tail region to the dayside to replenish magnetospheric magnetic flux that is eroded at the dayside as a result of dayside reconnection. Slow (adiabatic) convection from the near-Earth tail region toward the dayside must conserve the entropy on magnetic field lines. This constraint prohibits a source of magnetic flux from a region further out in the magnetotail. Thus the near-Earth tail region is increasingly depleted of magnetic flux (the Erickson and Wolf [1980] problem) with entropy matching that of flux tubes that are eroded on the dayside. It is proposed that the magnetic flux depletion in the near-Earth tail forces the formation of thin current layers. The process is illustrated and examined by three-dimensional meso-scale MHD simulations. It is shown that the simulations yield a time scale, location, and other general characteristics of the current sheet evolution consistent with observations during the substorm growth phase. The developing thin current sheet is easily destabilized and can undergo localized reconnection events. We present properties of the thinning current sheet, the associated entropy evolution, examples of localized reconnection onset and we discuss the dependence of this process on external parameters such the global reconnection rate.

Elemental and mineral inventory of tailing impoundments near Pezinok, Slovakia and possible courses of action for their remediation

NASA Astrophysics Data System (ADS)

Majzlan, Juraj; Brecht, Björn; Lalinská, Bronislava; Chovan, Martin; Moravanský, Daniel; Uhlík, Peter

2010-01-01

An effective remediation strategy for a polluted site should take the absolute amount of the pollutant(s) into account. Here, we present an elemental budget for As, Sb and Fe in two tailing impoundments of the former Sb-Au deposit near Pezinok, Slovakia. The two impoundments contain 5,740×103 kg As, 6,360×103 kg Sb and 50,105×103 kg Fe. An estimated total Au content in the impoundments is 132 kg. The most abundant minerals in the tailings are quartz, illite, and chlorite. The content of carbonates in the tailings is 3.5-10.5 wt% calcite equivalent and we estimate that the carbonates are sufficiently abundant to buffer the pH at circumneutral values, up to the point when all pyrite decomposes. The possible courses of action are i) do nothing, ii) build an active barrier to capture the released As and Sb, iii) isolate the impoundments from rain and ground water and iv) use the impoundments as a source of Sb and redeposit the waste in a safer form. The simplest approach is to do nothing, which seems to be the most likely course of events, given the current economic, political and societal state of the Slovak Republic. Although this action costs nothing in the short term, it may cause significant damage to the environment, especially to the alluvial sediments and associated water resources in the long term.

Beyond the power law: Uncovering stylized facts in interbank networks

NASA Astrophysics Data System (ADS)

Vandermarliere, Benjamin; Karas, Alexei; Ryckebusch, Jan; Schoors, Koen

2015-06-01

We use daily data on bilateral interbank exposures and monthly bank balance sheets to study network characteristics of the Russian interbank market over August 1998-October 2004. Specifically, we examine the distributions of (un)directed (un)weighted degree, nodal attributes (bank assets, capital and capital-to-assets ratio) and edge weights (loan size and counterparty exposure). We search for the theoretical distribution that fits the data best and report the "best" fit parameters. We observe that all studied distributions are heavy tailed. The fat tail typically contains 20% of the data and can be mostly described well by a truncated power law. Also the power law, stretched exponential and log-normal provide reasonably good fits to the tails of the data. In most cases, however, separating the bulk and tail parts of the data is hard, so we proceed to study the full range of the events. We find that the stretched exponential and the log-normal distributions fit the full range of the data best. These conclusions are robust to (1) whether we aggregate the data over a week, month, quarter or year; (2) whether we look at the "growth" versus "maturity" phases of interbank market development; and (3) with minor exceptions, whether we look at the "normal" versus "crisis" operation periods. In line with prior research, we find that the network topology changes greatly as the interbank market moves from a "normal" to a "crisis" operation period.

Perceptions of randomness in binary sequences: Normative, heuristic, or both?

PubMed

Reimers, Stian; Donkin, Chris; Le Pelley, Mike E

2018-03-01

When people consider a series of random binary events, such as tossing an unbiased coin and recording the sequence of heads (H) and tails (T), they tend to erroneously rate sequences with less internal structure or order (such as HTTHT) as more probable than sequences containing more structure or order (such as HHHHH). This is traditionally explained as a local representativeness effect: Participants assume that the properties of long sequences of random outcomes-such as an equal proportion of heads and tails, and little internal structure-should also apply to short sequences. However, recent theoretical work has noted that the probability of a particular sequence of say, heads and tails of length n, occurring within a larger (>n) sequence of coin flips actually differs by sequence, so P(HHHHH)

Pareto versus lognormal: A maximum entropy test

NASA Astrophysics Data System (ADS)

Bee, Marco; Riccaboni, Massimo; Schiavo, Stefano

2011-08-01

It is commonly found that distributions that seem to be lognormal over a broad range change to a power-law (Pareto) distribution for the last few percentiles. The distributions of many physical, natural, and social events (earthquake size, species abundance, income and wealth, as well as file, city, and firm sizes) display this structure. We present a test for the occurrence of power-law tails in statistical distributions based on maximum entropy. This methodology allows one to identify the true data-generating processes even in the case when it is neither lognormal nor Pareto. The maximum entropy approach is then compared with other widely used methods and applied to different levels of aggregation of complex systems. Our results provide support for the theory that distributions with lognormal body and Pareto tail can be generated as mixtures of lognormally distributed units.

Recovery of iron from cyanide tailings with reduction roasting-water leaching followed by magnetic separation.

PubMed

Zhang, Yali; Li, Huaimei; Yu, Xianjin

2012-04-30

Cyanide tailing is a kind of solid waste produced in the process of gold extraction from gold ore. In this paper, recovery of iron from cyanide tailings was studied with reduction roasting-water leaching process followed by magnetic separation. After analysis of chemical composition and crystalline phase, the effects of different parameters on recovery of iron were chiefly introduced. Systematic studies indicate that the high recovery rate and grade of magnetic concentrate of iron can be achieved under the following conditions: weight ratios of cyanide tailings/activated carbon/sodium carbonate/sodium sulfate, 100:10:3:10; temperature, 50 °C; time, 60 min at the reduction roasting stage; the liquid to solid ratio is 15:1 (ml/g), leaching at 60 °C for 5 min and stirring speed at 20 r/min at water-leaching; exciting current is 2A at magnetic separation. The iron grade of magnetic concentrate was 59.11% and the recovery ratio was 75.12%. The mineralography of cyanide tailings, roasted product, water-leached sample, magnetic concentrate and magnetic tailings were studied by X-ray powder diffraction (XRD) technique. The microstructures of above products except magnetic tailings were also analyzed by scanning electron microscope (SEM) and energy disperse spectroscopy (EDS) to help understand the mechanism. Copyright © 2012 Elsevier B.V. All rights reserved.

Interplanetary ions during an energetic storm particle event - The distribution function from solar wind thermal energies to 1.6 MeV

NASA Technical Reports Server (NTRS)

Gosling, J. T.; Asbridge, J. R.; Bame, S. J.; Feldman, W. C.; Zwickl, R. D.; Paschmann, G.; Sckopke, N.; Hynds, R. J.

1981-01-01

An ion velocity distribution function of the postshock phase of an energetic storm particle (ESP) event is obtained from data from the ISEE 2 and ISEE 3 experiments. The distribution function is roughly isotropic in the solar wind frame from solar wind thermal energies to 1.6 MeV. The ESP event studied (8/27/78) is superposed upon a more energetic particle event which was predominantly field-aligned and which was probably of solar origin. The observations suggest that the ESP population is accelerated directly out of the solar wind thermal population or its quiescent suprathermal tail by a stochastic process associated with shock wave disturbance. The acceleration mechanism is sufficiently efficient so that approximately 1% of the solar wind population is accelerated to suprathermal energies. These suprathermal particles have an energy density of approximately 290 eV cubic centimeters.

Uranium isotopes distinguish two geochemically distinct stages during the later Cambrian SPICE event

PubMed Central

Dahl, Tais W.; Boyle, Richard A.; Canfield, Donald E.; Connelly, James N.; Gill, Benjamin C.; Lenton, Timothy M.; Bizzarro, Martin

2015-01-01

Anoxic marine zones were common in early Paleozoic oceans (542–400 Ma), and present a potential link to atmospheric pO2 via feedbacks linking global marine phosphorous recycling, primary production and organic carbon burial. Uranium (U) isotopes in carbonate rocks track the extent of ocean anoxia, whereas carbon (C) and sulfur (S) isotopes track the burial of organic carbon and pyrite sulfur (primary long-term sources of atmospheric oxygen). In combination, these proxies therefore reveal the comparative dynamics of ocean anoxia and oxygen liberation to the atmosphere over million-year time scales. Here we report high-precision uranium isotopic data in marine carbonates deposited during the Late Cambrian ‘SPICE’ event, at ca. 499 Ma, documenting a well-defined −0.18‰ negative δ238U excursion that occurs at the onset of the SPICE event’s positive δ13C and δ34S excursions, but peaks (and tails off) before them. Dynamic modelling shows that the different response of the U reservoir cannot be attributed solely to differences in residence times or reservoir sizes - suggesting that two chemically distinct ocean states occurred within the SPICE event. The first ocean stage involved a global expansion of euxinic waters, triggering the spike in U burial, and peaking in conjunction with a well-known trilobite extinction event. During the second stage widespread euxinia waned, causing U removal to tail off, but enhanced organic carbon and pyrite burial continued, coinciding with evidence for severe sulfate depletion in the oceans (Gill et al., 2011). We discuss scenarios for how an interval of elevated pyrite and organic carbon burial could have been sustained without widespread euxinia in the water column (both non-sulfidic anoxia and/or a more oxygenated ocean state are possibilities). Either way, the SPICE event encompasses two different stages of elevated organic carbon and pyrite burial maintained by high nutrient fluxes to the ocean, and potentially sustained by internal marine geochemical feedbacks. PMID:25684783

Human chimera-type galectin-3: defining the critical tail length for high-affinity glycoprotein/cell surface binding and functional competition with galectin-1 in neuroblastoma cell growth regulation.

PubMed

Kopitz, Jürgen; Vértesy, Sabine; André, Sabine; Fiedler, Sabine; Schnölzer, Martina; Gabius, Hans-Joachim

2014-09-01

Many human proteins have a modular design with receptor and structural domains. Using adhesion/growth-regulatory galectin-3 as model, we describe an interdisciplinary strategy to define the functional significance of its tail established by nine non-triple helical collagen-like repeats (I-IX) and the N-terminal peptide. Genetic engineering with sophisticated mass spectrometric product analysis provided the tools for biotesting, i.e. eight protein variants with different degrees of tail truncation. Evidently,various aspects of galectin-3 activity (cis binding and cell bridging) are affected by tail shortening in a different manner. Thus, this combined approach reveals an unsuspected complexity of structure-function relationship, encouraging further application beyond this chimera-type galectin. Copyright © 2014 Elsevier Masson SAS. All rights reserved.

Implications of long tails in the distribution of mutant effects

NASA Astrophysics Data System (ADS)

Waxman, D.; Feng, J.

2005-07-01

Long-tailed distributions possess an infinite variance, yet a finite sample that is drawn from such a distribution has a finite variance. In this work we consider a model of a population subject to mutation, selection and drift. We investigate the implications of a long-tailed distribution of mutant allelic effects on the distribution of genotypic effects in a model with a continuum of allelic effects. While the analysis is confined to asexual populations, it does also have implications for sexual populations. We obtain analytical results for a selectively neutral population as well as one subject to selection. We supplement these analytical results with numerical simulations, to take into account genetic drift. We find that a long-tailed distribution of mutant effects may affect both the equilibrium and the evolutionary adaptive behaviour of a population.

Longitudinal analysis reveals characteristically high proportions of bacterial vaginosis-associated bacteria and temporal variability of vaginal microbiota in northern pig-tailed macaques (Macaca leonina).

PubMed

Zhu, Lin; Lei, Ai-Hua; Zheng, Hong-Yi; Lyu, Long-Bao; Zhang, Zhi-Gang; Zheng, Yong-Tang

2015-09-18

The complex and dynamic vaginal microbial ecosystem is critical to both health and disease of the host. Studies focusing on how vaginal microbiota influences HIV-1 infection may face limitations in selecting proper animal models. Given that northern pig-tailed macaques (Macaca leonina) are susceptible to HIV-1 infection, they may be an optimal animal model for elucidating the mechanisms by which vaginal microbiota contributes to resistance and susceptibility to HIV-1 infection. However, little is known about the composition and temporal variability of vaginal microbiota of the northern pig-tailed macaque. Here, we present a comprehensive catalog of the composition and temporal dynamics of vaginal microbiota of two healthy northern pig-tailed macaques over 19 weeks using 454-pyrosequencing of 16S rRNA genes. We found remarkably high proportions of a diverse array of anaerobic bacteria associated with bacterial vaginosis. Atopobium and Sneathia were dominant genera, and interestingly, we demonstrated the presence of Lactobacillus-dominated vaginal microbiota. Moreover, longitudinal analysis demonstrated that the temporal dynamics of the vaginal microbiota were considerably individualized. Finally, network analysis revealed that vaginal pH may influence the temporal dynamics of the vaginal microbiota, suggesting that inter-subject variability of vaginal bacterial communities could be mirrored in inter-subject variation in correlation profiles of species with each other and with vaginal pH over time. Our results suggest that the northern pig-tailed macaque could be an ideal animal model for prospective investigation of the mechanisms by which vaginal microbiota influence susceptibility and resistance to HIV-1 infection in the context of highly polymicrobial and Lactobacillus-dominated states.

Optimization of Plant Growth-Promoting Bacteria-Assisted Phytostabilization of Mine Tailings

PubMed Central

Grandlic, Christopher J.; Palmer, Michael W.; Maier, Raina M.

2009-01-01

Recent studies have indicated that plant growth-promoting bacteria (PGPB) can improve revegetation of arid mine tailings as measured by increased biomass production. The goals of the present study were first to evaluate how mode of application of known PGPB affects plant growth, and second to evaluate the effect of this inoculation on rhizosphere microbial community structure. PGPB application strategies investigated include preliminary surface sterilization of seeds (a common practice in phytoremediation trials) followed by a comparison of two application methods; immersion and alginate encapsulation. Results with two native desert plant species, Atriplex lentiformis and Buchloe dactyloides, suggest that seed surface sterilization prior to inoculation is not necessary to achieve beneficial effects of introduced PGPB. Both PGPB application techniques generally enhanced plant growth although results were both plant and PGPB specific. These results demonstrate that alginate encapsulation, which allows for long-term storage and easier application to seeds, is an effective way to inoculate PGPB. In addition, the influence of PGPB application on B. dactyloides rhizosphere community structure was evaluated using PCR-DGGE (denaturing gradient gel electrophoresis) analysis of bacterial DNA extracted from rhizosphere samples collected 75 d following planting. A comparative analysis of DGGE profiles was performed using canonical correspondence analysis (CCA). DGGE-CCA showed that rhizosphere community profiles from PGPB-inoculated treatments are significantly different from both uninoculated tailings rhizosphere profiles and profiles from the compost used to amend the tailings. Further, community profiles from B. dactyloides inoculated with the best performing PGPB (Arthro mix) were significantly different from two other PGPB tested. These results suggest that introduced PGPB have the potential to influence the development of the rhizosphere community structure found in plants grown in mine tailings. PMID:20161141

Hydrophilization of Magnetic Nanoparticles with Modified Alternating Copolymers. Part 1: The Influence of the Grafting

PubMed Central

Bronstein, Lyudmila M.; Shtykova, Eleonora V.; Malyutin, Andrey; Dyke, Jason C.; Gunn, Emily; Gao, Xinfeng; Stein, Barry; Konarev, Peter V.; Dragnea, Bogdan; Svergun, Dmitri I.

2010-01-01

Iron oxide nanoparticles (NPs) with a diameter 21.6 nm were coated with poly(maleic acid-alt-1-octadecene) (PMAcOD) modified with grafted 5,000 Da poly(ethyelene glycol) (PEG) or short ethylene glycol (EG) tails. The coating procedure utilizes hydrophobic interactions of octadecene and oleic acid tails, while the hydrolysis of maleic anhydride moieties as well as the presence of hydrophilic PEG (EG) tails allows the NP hydrophilicity. The success of the NP coating was found to be independent of the degree of grafting which was varied between 20 and 80% of the –MacOD-units, but depended on the length of the grafted tail. The NP coating and hydrophilization did not occur when the modified copolymer contained 750 Da PEG tails independently of the grafting degree. To explain this phenomenon the micellization of the modified PMAcOD copolymers in water was analyzed by small angle x-ray scattering (SAXS). The PMAcOD molecules with the grafted 750 Da PEG tails form compact non-interacting disk-like micelles, whose stability apparently allows for no interactions with the NP hydrophobic shells. The PMAcOD containing the 5,000 Da PEG and EG tails form much larger aggregates capable of an efficient coating of the NPs. The coated NPs were characterized using transmission electron microscopy, dynamic light scattering, ζ-potential measurements, and thermal gravimetry analysis. The latter method demonstrated that the presence of long PEG tails in modified PMAcOD allows the attachment of fewer macromolecules (by a factor of ~20) compared to the case of non-modified or EG modified PMAcOD, emphasizing the importance of PEG tails in NP hydrophilization. The NPs coated with PMAcOD modified with 60% (towards all –MAcOD- units) of the 5,000 PEG tails bear a significant negative charge and display good stability in buffers. Such NPs can be useful as magnetic cores for virus-like particle formation. PMID:21221425

Evaluation of pyritic mine tailings as a plant growth substrate.

PubMed

Roseby, Stuart J; Kopittke, Peter M; Mulligan, David R; Menzies, Neal W

2017-10-01

At the Kidston gold mine, Australia, the direct establishment of vegetation on tailings was considered as an alternative to the use of a waste rock cover. The tailings acid/base account was used to predict plant growth limitation by acidity, and thus methods capable of identifying tailings that would acidify to pH 4.5 or lower were sought. Total S was found to be poorly correlated with acid-generating sulfide, and total C was poorly correlated with acid-neutralizing carbonate, precluding the use of readily determined total S and C as predictors of net acid generation. Therefore, the selected approach used assessment of sulfide content as a predictor of acid generation, and carbonate content as a measure of the acid-neutralizing capacity available at pH 5 and above. Using this approach, the majority of tailings (67%) were found to be non-acid generating. However, areas of potentially acid-generating tailings were randomly distributed across the dam, and could only be located by intensive sampling. The limitations imposed by the large sample numbers, and costly analysis of sulfide and carbonate, make it impractical to identify and ameliorate acid-generating areas prior to vegetation establishment. However, as only a small proportion of the tailings will acidify, a strategy of re-treating acid areas following oxidation is suggested. The findings of the present study will assist in the selection of appropriate methods for the prediction of net acid generation, particularly where more conservative measurements are required to allow vegetation to be established directly in tailings. Copyright © 2017 Elsevier Ltd. All rights reserved.

Abandoned Rayrock uranium mill tailings in the Northwest Territories: Environmental conditions and radiological impact

DOE Office of Scientific and Technical Information (OSTI.GOV)

Veska, E.; Eaton, R.S.

Field and laboratory investigations were undertaken of the environment surrounding abandoned U mill tailings at Rayrock, Northwest Territories, Canada, to examine the extent of 226Ra and U contamination. Samples of ground water, surface water, and unconsolidated geological material from the Rayrock area were collected for chemical and radiochemical analyses. Results indicated that the surface waters contained levels of 226Ra as high as 20 Bq L-1, 210Pb as high as 1.1 Bq L-1, and ground water U as high as 2800 micrograms L-1. Lower levels of 226Ra, 210Pb, and U, 3.6 Bq L-1, 0.5 Bq L-1, and 4 micrograms L-1, respectively,more » were found in a small lake adjacent to the tailings area. Analysis of tailings and soil in the immediate vicinity indicates that the radionuclides and U are mobilized and can move within the tailings. Some of the mobilized radionuclides will be bound by the surrounding peat. The remainder may move to Lake Alpha in ground water. Surface water flow also transports some contaminants both in the water of Alpha Creek and by washing tailings into Lake Alpha. The potential annual external and internal dose equivalents to a hypothetical resident were calculated based on exposure from the abandoned U mill tailings, drinking water, and fish caught in the lakes in the vicinity of the tailings. While Alpha Creek and Lake Alpha water showed evidence of contamination, the rest of the water system and the fish were at natural background levels of radioactivity.« less

Of Disasters and Dragon Kings: A Statistical Analysis of Nuclear Power Incidents and Accidents.

PubMed

Wheatley, Spencer; Sovacool, Benjamin; Sornette, Didier

2017-01-01

We perform a statistical study of risk in nuclear energy systems. This study provides and analyzes a data set that is twice the size of the previous best data set on nuclear incidents and accidents, comparing three measures of severity: the industry standard International Nuclear Event Scale, the Nuclear Accident Magnitude Scale of radiation release, and cost in U.S. dollars. The rate of nuclear accidents with cost above 20 MM 2013 USD, per reactor per year, has decreased from the 1970s until the present time. Along the way, the rate dropped significantly after Chernobyl (April 1986) and is expected to be roughly stable around a level of 0.003, suggesting an average of just over one event per year across the current global fleet. The distribution of costs appears to have changed following the Three Mile Island major accident (March 1979). The median cost became approximately 3.5 times smaller, but an extremely heavy tail emerged, being well described by a Pareto distribution with parameter α = 0.5-0.6. For instance, the cost of the two largest events, Chernobyl and Fukushima (March 2011), is equal to nearly five times the sum of the 173 other events. We also document a significant runaway disaster regime in both radiation release and cost data, which we associate with the "dragon-king" phenomenon. Since the major accident at Fukushima (March 2011) occurred recently, we are unable to quantify an impact of the industry response to this disaster. Excluding such improvements, in terms of costs, our range of models suggests that there is presently a 50% chance that (i) a Fukushima event (or larger) occurs every 60-150 years, and (ii) that a Three Mile Island event (or larger) occurs every 10-20 years. Further-even assuming that it is no longer possible to suffer an event more costly than Chernobyl or Fukushima-the expected annual cost and its standard error bracket the cost of a new plant. This highlights the importance of improvements not only immediately following Fukushima, but also deeper improvements to effectively exclude the possibility of "dragon-king" disasters. Finally, we find that the International Nuclear Event Scale (INES) is inconsistent in terms of both cost and radiation released. To be consistent with cost data, the Chernobyl and Fukushima disasters would need to have between an INES level of 10 and 11, rather than the maximum of 7. © 2016 The Authors Risk Analysis published by Wiley Periodicals, Inc. on behalf of Society for Risk Analysis.

Predicting Tail Buffet Loads of a Fighter Airplane

NASA Technical Reports Server (NTRS)

Moses, Robert W.; Pototzky, Anthony S.

2006-01-01

Buffet loads on aft aerodynamic surfaces pose a recurring problem on most twin-tailed fighter airplanes: During maneuvers at high angles of attack, vortices emanating from various surfaces on the forward parts of such an airplane (engine inlets, wings, or other fuselage appendages) often burst, immersing the tails in their wakes. Although these vortices increase lift, the frequency contents of the burst vortices become so low as to cause the aft surfaces to vibrate destructively. Now, there exists a new analysis capability for predicting buffet loads during the earliest design phase of a fighter-aircraft program. In effect, buffet pressures are applied to mathematical models in the framework of a finite-element code, complete with aeroelastic properties and working knowledge of the spatiality of the buffet pressures for all flight conditions. The results of analysis performed by use of this capability illustrate those vibratory modes of a tail fin that are most likely to be affected by buffet loads. Hence, the results help in identifying the flight conditions during which to expect problems. Using this capability, an aircraft designer can make adjustments to the airframe and possibly the aerodynamics, leading to a more robust design.

Observations of the Evolution of Ion Outflow During a Sawtooth Event

NASA Astrophysics Data System (ADS)

Lund, E. J.; Nowrouzi, N.; Kistler, L. M.; Cai, X.; Frey, H. U.

2015-12-01

Sawtooth oscillations are one of several convection modes known to exist in the magnetosphere. Recent simulations have suggested that O+^+ ions transported from the high-latitude ionosphere to the magnetotail can drive sawtooth events. We present observational case studies of sawtooth events using data from FAST near the noon-midnight meridional plane, Cluster in the magnetotail, GOES and LANL energetic particle sensors at geosynchronous orbit, and ACE solar wind data to investigate the evolution of ion outflow during sawtooth events and the question of whether O+^+ outflow from one tooth helps to drive subsequent teeth. We find that oxygen enters the tail from the lobes after each tooth onset, the oxygen fraction in the magnetotail often increases after a tooth onset, and that the oxygen fraction of outflowing ions increases after a tooth event both in the cusp and on the nightside. However, a significant amount of low energy oxygen (≲1 keV) can end up in the dayside inner magnetosphere.

QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin

PubMed Central

Savol, Andrej J.; Burger, Virginia M.; Agarwal, Pratul K.; Ramanathan, Arvind; Chennubhotla, Chakra S.

2011-01-01

Motivation: Molecular dynamics (MD) simulations have dramatically improved the atomistic understanding of protein motions, energetics and function. These growing datasets have necessitated a corresponding emphasis on trajectory analysis methods for characterizing simulation data, particularly since functional protein motions and transitions are often rare and/or intricate events. Observing that such events give rise to long-tailed spatial distributions, we recently developed a higher-order statistics based dimensionality reduction method, called quasi-anharmonic analysis (QAA), for identifying biophysically-relevant reaction coordinates and substates within MD simulations. Further characterization of conformation space should consider the temporal dynamics specific to each identified substate. Results: Our model uses hierarchical clustering to learn energetically coherent substates and dynamic modes of motion from a 0.5 μs ubiqutin simulation. Autoregressive (AR) modeling within and between states enables a compact and generative description of the conformational landscape as it relates to functional transitions between binding poses. Lacking a predictive component, QAA is extended here within a general AR model appreciative of the trajectory's temporal dependencies and the specific, local dynamics accessible to a protein within identified energy wells. These metastable states and their transition rates are extracted within a QAA-derived subspace using hierarchical Markov clustering to provide parameter sets for the second-order AR model. We show the learned model can be extrapolated to synthesize trajectories of arbitrary length. Contact: ramanathana@ornl.gov; chakracs@pitt.edu PMID:21685101

Ulysses feels the brush of a comet's tail

NASA Astrophysics Data System (ADS)

2000-04-01

"Ulysses's prime task is to map the solar wind above the Sun's poles: it had not been looking for Hyakutake, which happened to be at its closest approach to the Sun on 1 May 1996, or any other comet", says Richard Marsden, ESA's Ulysses Project Scientist. "Ulysses was just in the right place at the right time." The two teams stumbled across the telltale signature of a comet quite independently when poring over old Ulysses data. Jones and colleagues found their evidence in magnetic field data: "the magnetic field lines were draped in a way that you'd expect in a comet's tail," says Jones. The other instrument team, lead by George Gloeckler from the University of Maryland, found their evidence when looking at the composition of the solar wind. Cometary tails are rich in oxygen and carbon compared with the solar wind, but depleted in nitrogen and neon. The Imperial College team identified Hyakutake as the source of the anomalous readings. On 1 May 1996, Ulysses was aligned with the Sun and the position Hyakutake had occupied eight days earlier, which Jones calculated was the time needed for material leaving the comet's nucleus to travel the distance to Ulysses. One of the most surprising aspects of the discovery is the length of Hyakutake's tail. Cometary experts had thought that comet tails eventually spread out and lose their integrity. "We found that the whole thing is preserved as an entity and doesn't spread out very much," says Gloeckler. "If it can persist as far as Ulysses, there's no reason to presume that it wouldn't continue to the edge of the heliosphere (the boundary about 100AU from the Sun between the solar wind and the interstellar medium)," says Jones. "This discovery makes us wonder whether Ulysses or other spacecraft have crossed a comet tail before. So we're going back to look again for other signatures. But it's probably a rare event," says Jones. The comet nucleus has to be in exactly the right position with respect to the Sun and the spacecraft for the tail to pass over the spacecraft at the right time - and the chances of that happening very often are probably small.

The long-term environmental impacts of the Mount Polley mine tailings spill, British Columbia, Canada

NASA Astrophysics Data System (ADS)

Byrne, Patrick; Hudson-Edwards, Karen; Macklin, Mark; Brewer, Paul; Bird, Graham; Williams, Richard

2015-04-01

On the 4th August 2014 a tailings impoundment failure at the Mount Polley gold and copper mine in British Columbia, Canada, released approximately 25 million m3 of solid and liquid waste into Hazeltine Creek, Quesnel Lake and Polley Lake. The sheer volume of the tailings released caused Haseltine Creek channel to expand from 2m to over 25m in width and Polley Lake water level to rise by 1.7m. The spill also removed trees in a 900 km2 corridor either side of Hazeltine Creek. Local residents and government officials have expressed serious concerns regarding the potential long-term effects on regional biodiversity, water security and to the livelihoods of First Nation communities. Among impoundment failures, the Mount Polley disaster is unique in that the solid tailings contain an unusual mixture of metal contaminants (arsenic, copper, gold, manganese, nickel, lead, vanadium). As particulate matter is the principal carrier of metal contaminants, the spilled tailings may reside in the regional soils and sediments for 1000s of years serving as a secondary source of pollution. The environmental risk posed by the spilled tailings is compounded by the location of the spill in a mountainous forested catchment, affected by severe winters with prominent spring snow melts that have the potential to remobilise very large quantities of spilled tailings. No data currently exist on the short- to long-term behaviour of these tailings in soils and sediments and the effects of the clean-up operations on their behaviour in this type of river environment. In this study, we adopt a multidisciplinary approach to determine the environmental and geomorphological impacts of the tailings spill. We have two specific objectives. (1) The physicochemical speciation and geochemical stability of spilled tailings will be characterised in surface and hyporheic sediments using bulk chemistry, mineralogical (XRD and SEM) and speciation methods (sequential extractions, electron microprobe analysis, XAS). (2) Pre- and post-remediation geomorphological assessments will use unmanned aerial vehicle (UAV) photographic surveys and ground-based topographic surveys to (i) establish the efficacy of remediation efforts in stabilising Hazeltine Creek channel and (ii) quantify the physical remobilisation of tailings during the spring snowmelt.

Estimating interevent time distributions from finite observation periods in communication networks

NASA Astrophysics Data System (ADS)

Kivelä, Mikko; Porter, Mason A.

2015-11-01

A diverse variety of processes—including recurrent disease episodes, neuron firing, and communication patterns among humans—can be described using interevent time (IET) distributions. Many such processes are ongoing, although event sequences are only available during a finite observation window. Because the observation time window is more likely to begin or end during long IETs than during short ones, the analysis of such data is susceptible to a bias induced by the finite observation period. In this paper, we illustrate how this length bias is born and how it can be corrected without assuming any particular shape for the IET distribution. To do this, we model event sequences using stationary renewal processes, and we formulate simple heuristics for determining the severity of the bias. To illustrate our results, we focus on the example of empirical communication networks, which are temporal networks that are constructed from communication events. The IET distributions of such systems guide efforts to build models of human behavior, and the variance of IETs is very important for estimating the spreading rate of information in networks of temporal interactions. We analyze several well-known data sets from the literature, and we find that the resulting bias can lead to systematic underestimates of the variance in the IET distributions and that correcting for the bias can lead to qualitatively different results for the tails of the IET distributions.

An Analysis of the Orbital Distribution of Solid Rocket Motor Slag

NASA Technical Reports Server (NTRS)

Horstman, Matthew F.; Mulrooney, Mark

2007-01-01

The contribution made by orbiting solid rocket motors (SRMs) to the orbital debris environment is both potentially significant and insufficiently studied. A combination of rocket motor design and the mechanisms of the combustion process can lead to the emission of sufficiently large and numerous by-products to warrant assessment of their contribution to the orbital debris environment. These particles are formed during SRM tail-off, or the termination of burn, by the rapid expansion, dissemination, and solidification of the molten Al2O3 slag pool accumulated during the main burn phase of SRMs utilizing immersion-type nozzles. Though the usage of SRMs is low compared to the usage of liquid fueled motors, the propensity of SRMs to generate particles in the 100 m and larger size regime has caused concern regarding their contributing to the debris environment. Particle sizes as large as 1 cm have been witnessed in ground tests conducted under vacuum conditions and comparable sizes have been estimated via ground-based telescopic and in-situ observations of sub-orbital SRM tail-off events. Using sub-orbital and post recovery observations, a simplistic number-size-velocity distribution of slag from on-orbit SRM firings was postulated. In this paper we have developed more elaborate distributions and emission scenarios and modeled the resultant orbital population and its time evolution by incorporating a historical database of SRM launches, propellant masses, and likely location and time of particulate deposition. From this analysis a more comprehensive understanding has been obtained of the role of SRM ejecta in the orbital debris environment, indicating that SRM slag is a significant component of the current and future population.

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses.

PubMed

Brum, Jennifer R; Schenck, Ryan O; Sullivan, Matthew B

2013-09-01

Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene expression and changing the trajectory of microbial evolution through horizontal gene transfer. Limited host range and differing genetic potential of individual virus types mean that investigations into the types of viruses that exist in the ocean and their spatial distribution throughout the world's oceans are critical to understanding the global impacts of marine viruses. Here we evaluate viral morphological characteristics (morphotype, capsid diameter and tail length) using a quantitative transmission electron microscopy (qTEM) method across six of the world's oceans and seas sampled through the Tara Oceans Expedition. Extensive experimental validation of the qTEM method shows that neither sample preservation nor preparation significantly alters natural viral morphological characteristics. The global sampling analysis demonstrated that morphological characteristics did not vary consistently with depth (surface versus deep chlorophyll maximum waters) or oceanic region. Instead, temperature, salinity and oxygen concentration, but not chlorophyll a concentration, were more explanatory in evaluating differences in viral assemblage morphological characteristics. Surprisingly, given that the majority of cultivated bacterial viruses are tailed, non-tailed viruses appear to numerically dominate the upper oceans as they comprised 51-92% of the viral particles observed. Together, these results document global marine viral morphological characteristics, show that their minimal variability is more explained by environmental conditions than geography and suggest that non-tailed viruses might represent the most ecologically important targets for future research.

Determination of the elemental concentration of uranium and thorium in the products and by-products of amang tin tailings process

NASA Astrophysics Data System (ADS)

Alnour, I. A.; Wagiran, H.; Ibrahim, N.; Hamzah, S.; Elias, M. S.

2017-01-01

Amang or tin tailing is processed into concentrated ores and other economical valuable minerals such as monazite, zircon, xenotime, ilmenite etc. Besides that, the tailings from these ores may have a significant potential source of radiation exposure to amang plants' workers. This study was conducted to determine the elemental concentration of uranium and thorium in mineral samples collected from five amang tailing factories. The concentration of uranium and thorium was carried out by using instrumental neutron activation analysis (INAA) relative technique. The concentration of uranium and thorium in ppm obtained in this study are as follows: raw (189-1064) and (622-4965); monazite (1076-1988) and (3467-33578); xenotime 4053 and 5540; zircon (309-3090) and (387-6339); ilmenite (104-583) and (88-1205); rutile (212-889) and (44-1119); pyrite (7-43) and (9-132); and waste (5-338) and (9-1218) respectively. The analysis results shows that the monazite, xenotime and zircon have high content of uranium and thorium, whereas ilmenite, rutile, pyrite and waste have lower concentration compare with raw materials after tailing process. The highest values of uranium and thorium concentrations (4053 ± 428 ppm and 33578 ± 873 ppm, respectively) were observed in xenotime and monazite; whereas the lowest value was 5.48 ± 0.86 ppm of uranium recorded in waste (sand) and 9 ± 0.32 ppm of thorium for waste (sand) and pyrite.

Structure and function of the interacting domains of Spire and Fmn-family formins.

PubMed

Vizcarra, Christina L; Kreutz, Barry; Rodal, Avital A; Toms, Angela V; Lu, Jun; Zheng, Wei; Quinlan, Margot E; Eck, Michael J

2011-07-19

Evidence for cooperation between actin nucleators is growing. The WH2-containing nucleator Spire and the formin Cappuccino interact directly, and both are essential for assembly of an actin mesh during Drosophila oogenesis. Their interaction requires the kinase noncatalytic C-lobe domain (KIND) domain of Spire and the C-terminal tail of the formin. Here we describe the crystal structure of the KIND domain of human Spir1 alone and in complex with the tail of Fmn2, a mammalian ortholog of Cappuccino. The KIND domain is structurally similar to the C-lobe of protein kinases. The Fmn2 tail is coordinated in an acidic cleft at the base of the domain that appears to have evolved via deletion of a helix from the canonical kinase fold. Our functional analysis of Cappuccino reveals an unexpected requirement for its tail in actin assembly. In addition, we find that the KIND/tail interaction blocks nucleation by Cappuccino and promotes its displacement from filament barbed ends providing insight into possible modes of cooperation between Spire and Cappuccino.

Structure of 1-alkyl-1-methylpyrrolidinium bis(trifluoromethylsulfonyl)amide ionic liquids with linear, branched, and cyclic alkyl groups.

PubMed

Kashyap, Hemant K; Santos, Cherry S; Murthy, N Sanjeeva; Hettige, Jeevapani J; Kerr, Kijana; Ramati, Sharon; Gwon, JinHee; Gohdo, Masao; Lall-Ramnarine, Sharon I; Wishart, James F; Margulis, Claudio J; Castner, Edward W

2013-12-12

X-ray scattering and molecular dynamics simulations have been carried out to investigate structural differences and similarities in the condensed phase between pyrrolidinium-based ionic liquids paired with the bis(trifluoromethylsulfonyl)amide (NTf2(-)) anion where the cationic tail is linear, branched, or cyclic. This is important in light of the charge and polarity type alternations that have recently been shown to be present in the case of liquids with cations of moderately long linear tails. For this study, we have chosen to use the 1-alkyl-1-methylpyrrolidinium, Pyrr(1,n(+)) with n = 5 or 7, as systems with linear tails, 1-(2-ethylhexyl)-1-methylpyrrolidinium, Pyrr(1,EtHx(+)), as a system with a branched tail, and 1-(cyclohexylmethyl)-1-methylpyrrolidinium, Pyrr(1,ChxMe(+)), as a system with a cyclic tail. We put these results into context by comparing these data with recently published results for the Pyrr(1,n(+))/NTf2(-) ionic liquids with n = 4, 6, 8, and 10.1,2 General methods for interpreting the structure function S(q) in terms of q-dependent natural partitionings are described. This allows for an in-depth analysis of the scattering data based on molecular dynamics (MD) trajectories that highlight the effect of modifying the cationic tail.

Limits of the memory coefficient in measuring correlated bursts

NASA Astrophysics Data System (ADS)

Jo, Hang-Hyun; Hiraoka, Takayuki

2018-03-01

Temporal inhomogeneities in event sequences of natural and social phenomena have been characterized in terms of interevent times and correlations between interevent times. The inhomogeneities of interevent times have been extensively studied, while the correlations between interevent times, often called correlated bursts, are far from being fully understood. For measuring the correlated bursts, two relevant approaches were suggested, i.e., memory coefficient and burst size distribution. Here a burst size denotes the number of events in a bursty train detected for a given time window. Empirical analyses have revealed that the larger memory coefficient tends to be associated with the heavier tail of the burst size distribution. In particular, empirical findings in human activities appear inconsistent, such that the memory coefficient is close to 0, while burst size distributions follow a power law. In order to comprehend these observations, by assuming the conditional independence between consecutive interevent times, we derive the analytical form of the memory coefficient as a function of parameters describing interevent time and burst size distributions. Our analytical result can explain the general tendency of the larger memory coefficient being associated with the heavier tail of burst size distribution. We also find that the apparently inconsistent observations in human activities are compatible with each other, indicating that the memory coefficient has limits to measure the correlated bursts.

Enhanced t -3/2 long-time tail for the stress-stress time correlation function

NASA Astrophysics Data System (ADS)

Evans, Denis J.

1980-01-01

Nonequilibrium molecular dynamics is used to calculate the spectrum of shear viscosity for a Lennard-Jones fluid. The calculated zero-frequency shear viscosity agrees well with experimental argon results for the two state points considered. The low-frequency behavior of shear viscosity is dominated by an ω 1/2 cusp. Analysis of the form of this cusp reveals that the stress-stress time correlation function exhibits a t -3/2 "long-time tail." It is shown that for the state points studied, the amplitude of this long-time tail is between 12 and 150 times larger than what has been predicted theoretically. If the low-frequency results are truly asymptotic, they imply that the cross and potential contributions to the Kubo-Green integrand for shear viscosity exhibit a t -3/2 long-time tail. This result contradicts the established theory of such processes.

Empirical study of the tails of mutual fund size

NASA Astrophysics Data System (ADS)

Schwarzkopf, Yonathan; Farmer, J. Doyne

2010-06-01

The mutual fund industry manages about a quarter of the assets in the U.S. stock market and thus plays an important role in the U.S. economy. The question of how much control is concentrated in the hands of the largest players is best quantitatively discussed in terms of the tail behavior of the mutual fund size distribution. We study the distribution empirically and show that the tail is much better described by a log-normal than a power law, indicating less concentration than, for example, personal income. The results are highly statistically significant and are consistent across fifteen years. This contradicts a recent theory concerning the origin of the power law tails of the trading volume distribution. Based on the analysis in a companion paper, the log-normality is to be expected, and indicates that the distribution of mutual funds remains perpetually out of equilibrium.

Microbial diversity and community structure in an antimony-rich tailings dump.

PubMed

Xiao, Enzong; Krumins, Valdis; Dong, Yiran; Xiao, Tangfu; Ning, Zengping; Xiao, Qingxiang; Sun, Weimin

2016-09-01

To assess the impact of antimony (Sb) on microbial community structure, 12 samples were taken from an Sb tailings pile in Guizhou Province, Southwest China. All 12 samples exhibited elevated Sb concentrations, but the mobile and bioaccessible fractions were small in comparison to total Sb concentrations. Besides the geochemical analyses, microbial communities inhabiting the tailing samples were characterized to investigate the interplay between the microorganisms and environmental factors in mine tailings. In all samples, Proteobacteria and Actinobacteria were the most dominant phyla. At the genus level, Thiobacillus, Limnobacter, Nocardioides, Lysobacter, Phormidium, and Kaistobacter demonstrated relatively high abundances. The two most abundant genera, Thiobacillus and Limnobacter, are characterized as sulfur-oxidizing bacteria and thiosulfate-oxidizing bacteria, respectively, while the genus Lysobacter contains arsenic (As)-resistant bacteria. Canonical correspondence analysis (CCA) indicates that TOC and the sulfate to sulfide ratio strongly shaped the microbial communities, suggesting the influence of the environmental factors in the indigenous microbial communities.

Radiological survey of the inactive uranium-mill tailings at Durango, Colorado

DOE Office of Scientific and Technical Information (OSTI.GOV)

Haywood, F.F.; Perdue, P.T.; Shinpaugh, W.H.

1980-03-01

Results of a radiological survey of the inactive uranium-mill site at Durango, Colorado, conducted in April 1976, in cooperation with a team from Ford, Bacon and Davis Utah Inc., are presented together with descriptions of the instruments and techniques used to obtain the data. Direct above-ground gamma measurements and analysis of surface soil and sediment samples indicate movement of tailings from the piles toward Lightner Creek on the north and the Animas River on the east side of the piles. The concentration of /sup 226/Ra in the former raffinate pond area is only slightly above the background level. Two structuresmore » in Durango were found to contain high concentrations of airborne radon daughters, where tailings are known to have been utilized in construction. Near-background concentrations of radon daughters were found in a well-ventilated building close to the tailings.« less

Conformational analysis of the partially disordered measles virus N(TAIL)-XD complex by SDSL EPR spectroscopy.

PubMed

Kavalenka, Aleh; Urbancic, Iztok; Belle, Valérie; Rouger, Sabrina; Costanzo, Stéphanie; Kure, Sandra; Fournel, André; Longhi, Sonia; Guigliarelli, Bruno; Strancar, Janez

2010-03-17

To characterize the structure of dynamic protein systems, such as partly disordered protein complexes, we propose a novel approach that relies on a combination of site-directed spin-labeled electron paramagnetic resonance spectroscopy and modeling of local rotation conformational spaces. We applied this approach to the intrinsically disordered C-terminal domain of the measles virus nucleoprotein (N(TAIL)) both free and in complex with the X domain (XD, aa 459-507) of the viral phosphoprotein. By comparing measured and modeled temperature-dependent restrictions of the side-chain conformational spaces of 12 SL cysteine-substituted N(TAIL) variants, we showed that the 490-500 region of N(TAIL) is prestructured in the absence of the partner, and were able to quantitatively estimate, for the first time to our knowledge, the extent of the alpha-helical sampling of the free form. In addition, we showed that the 505-525 region of N(TAIL) conserves a significant degree of freedom even in the bound form. The latter two findings provide a mechanistic explanation for the reported rather high affinity of the N(TAIL)-XD binding reaction. Due to the nanosecond timescale of X-band EPR spectroscopy, we were also able to monitor the disordering in the 488-525 region of N(TAIL), in particular the unfolding of the alpha-helical region when the temperature was increased from 281 K to 310 K. Copyright 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Solution structure of the C-terminal X domain of the measles virus phosphoprotein and interaction with the intrinsically disordered C-terminal domain of the nucleoprotein.

PubMed

Gely, Stéphane; Lowry, David F; Bernard, Cédric; Jensen, Malene R; Blackledge, Martin; Costanzo, Stéphanie; Bourhis, Jean-Marie; Darbon, Hervé; Daughdrill, Gary; Longhi, Sonia

2010-01-01

In this report, the solution structure of the nucleocapsid-binding domain of the measles virus phosphoprotein (XD, aa 459-507) is described. A dynamic description of the interaction between XD and the disordered C-terminal domain of the nucleocapsid protein, (N(TAIL), aa 401-525), is also presented. XD is an all alpha protein consisting of a three-helix bundle with an up-down-up arrangement of the helices. The solution structure of XD is very similar to the crystal structures of both the free and bound form of XD. One exception is the presence of a highly dynamic loop encompassing XD residues 489-491, which is involved in the embedding of the alpha-helical XD-binding region of N(TAIL). Secondary chemical shift values for full-length N(TAIL) were used to define the precise boundaries of a transient helical segment that coincides with the XD-binding domain, thus shedding light on the pre-recognition state of N(TAIL). Titration experiments with unlabeled XD showed that the transient alpha-helical conformation of N(TAIL) is stabilized upon binding. Lineshape analysis of NMR resonances revealed that residues 483-506 of N(TAIL) are in intermediate exchange with XD, while the 475-482 and 507-525 regions are in fast exchange. The N(TAIL) resonance behavior in the titration experiments is consistent with a complex binding model with more than two states.

Spatial Characteristics of the Unsteady Differential Pressures on 16 percent F/A-18 Vertical Tails

NASA Technical Reports Server (NTRS)

Moses, Robert W.; Ashley, Holt

1998-01-01

Buffeting is an aeroelastic phenomenon which plagues high performance aircraft at high angles of attack. For the F/A-18 at high angles of attack, vortices emanating from wing/fuselage leading edge extensions burst, immersing the vertical tails in their turbulent wake. The resulting buffeting of the vertical tails is a concern from fatigue and inspection points of view. Previous flight and wind-tunnel investigations to determine the buffet loads on the tail did not provide a complete description of the spatial characteristics of the unsteady differential pressures. Consequently, the unsteady differential pressures were considered to be fully correlated in the analyses of buffet and buffeting. The use of fully correlated pressures in estimating the generalized aerodynamic forces for the analysis of buffeting yielded responses that exceeded those measured in flight and in the wind tunnel. To learn more about the spatial characteristics of the unsteady differential pressures, an available 16%, sting-mounted, F-18 wind-tunnel model was modified and tested in the Transonic Dynamics Tunnel (TDT) at the NASA Langley Research Center as part of the ACROBAT (Actively Controlled Response Of Buffet-Affected Tails) program. Surface pressures were measured at high angles of attack on flexible and rigid tails. Cross-correlation and cross-spectral analyses of the pressure time histories indicate that the unsteady differential pressures are not fully correlated. In fact, the unsteady differential pressure resemble a wave that travels along the tail. At constant angle of attack, the pressure correlation varies with flight speed.

Not Surprised, But Concerned: The Professoriate's Reaction to PETE Doctoral Education in the United States

ERIC Educational Resources Information Center

Parker, Melissa; Sutherland, Sue; Sinclair, Christina; Ward, Phillip

2011-01-01

The purpose of this qualitative study was to initiate a discussion and explore reactions to PETE doctoral education in the United States. A purposeful sample of 27 representatives from doctoral and non doctoral granting programs in the U.S. was interviewed. Analysis resulted in four themes: (a) Is the dog wagging its tail or the tail wagging the…

Analysis of Imp-C data from the magnetospheric tail

NASA Technical Reports Server (NTRS)

Speiser, T. W.

1973-01-01

Satellite magnetic field measurements in the geomagnetic tail current sheet are analyzed to determine the normal field component, and other CS parameters such as thickness, motion, vector current density, etc., and to make correlations with auroral activity as measured by the A sub e index. The satellite data used in the initial part of this study were from Explorer 28 and Explorer 34 satellites.

Transcriptome analysis of adipose tissues from two fat-tailed sheep breeds reveals key genes involved in fat deposition.

PubMed

Li, Baojun; Qiao, Liying; An, Lixia; Wang, Weiwei; Liu, Jianhua; Ren, Youshe; Pan, Yangyang; Jing, Jiongjie; Liu, Wenzhong

2018-05-08

The level of fat deposition in carcass is a crucial factor influencing meat quality. Guangling Large-Tailed (GLT) and Small-Tailed Han (STH) sheep are important local Chinese fat-tailed breeds that show distinct patterns of fat depots. To gain a better understanding of fat deposition, transcriptome profiles were determined by RNA-sequencing of perirenal, subcutaneous, and tail fat tissues from both the sheep breeds. The common highly expressed genes (co-genes) in all the six tissues, and the genes that were differentially expressed (DE genes) between these two breeds in the corresponding tissues were analyzed. Approximately 47 million clean reads were obtained for each sample, and a total of 17,267 genes were annotated. Of the 47 highly expressed co-genes, FABP4, ADIPOQ, FABP5, and CD36 were the four most highly transcribed genes among all the known genes related to adipose deposition. FHC, FHC-pseudogene, and ZC3H10 were also highly expressed genes and could, thus, have roles in fat deposition. A total of 2091, 4233, and 4131 DE genes were identified in the perirenal, subcutaneous, and tail fat tissues between the GLT and STH breeds, respectively. Gene Ontology (GO) analysis showed that some DE genes were associated with adipose metabolism. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed that PPAR signaling pathway and ECM-receptor interaction were specifically enriched. Four genes, namely LOC101102230, PLTP, C1QTNF7, and OLR1 were up-regulated and two genes, SCD and UCP-1, were down-regulated in all the tested tissues of STH. Among the genes involved in ECM-receptor interaction, the genes encoding collagens, laminins, and integrins were quite different depending on the depots or the breeds. In STH, genes such as LAMB3, RELN, TNXB, and ITGA8, were identified to be up regulated and LAMB4 was observed to be down regulated. This study unravels the complex transcriptome profiles in sheep fat tissues, highlighting the candidate genes involved in fat deposition. Further studies are needed to investigate the roles of the candidate genes in fat deposition and in determining the meat quality of sheep.

Aerodynamic Effects and Modeling of Damage to Transport Aircraft

NASA Technical Reports Server (NTRS)

Shah, Gautam H.

2008-01-01

A wind tunnel investigation was conducted to measure the aerodynamic effects of damage to lifting and stability/control surfaces of a commercial transport aircraft configuration. The modeling of such effects is necessary for the development of flight control systems to recover aircraft from adverse, damage-related loss-of-control events, as well as for the estimation of aerodynamic characteristics from flight data under such conditions. Damage in the form of partial or total loss of area was applied to the wing, horizontal tail, and vertical tail. Aerodynamic stability and control implications of damage to each surface are presented, to aid in the identification of potential boundaries in recoverable stability or control degradation. The aerodynamic modeling issues raised by the wind tunnel results are discussed, particularly the additional modeling requirements necessitated by asymmetries due to damage, and the potential benefits of such expanded modeling.

Intergroup variation in robbing and bartering by long-tailed macaques at Uluwatu Temple (Bali, Indonesia).

PubMed

Brotcorne, Fany; Giraud, Gwennan; Gunst, Noëlle; Fuentes, Agustín; Wandia, I Nengah; Beudels-Jamar, Roseline C; Poncin, Pascal; Huynen, Marie-Claude; Leca, Jean-Baptiste

2017-10-01

Robbing and bartering (RB) is a behavioral practice anecdotally reported in free-ranging commensal macaques. It usually occurs in two steps: after taking inedible objects (e.g., glasses) from humans, the macaques appear to use them as tokens, returning them to humans in exchange for food. While extensively studied in captivity, our research is the first to investigate the object/food exchange between humans and primates in a natural setting. During a 4-month study in 2010, we used both focal and event sampling to record 201 RB events in a population of long-tailed macaques (Macaca fascicularis), including four neighboring groups ranging freely around Uluwatu Temple, Bali (Indonesia). In each group, we documented the RB frequency, prevalence and outcome, and tested the underpinning anthropogenic and demographic determinants. In line with the environmental opportunity hypothesis, we found a positive qualitative relation at the group level between time spent in tourist zones and RB frequency or prevalence. For two of the four groups, RB events were significantly more frequent when humans were more present in the environment. We also found qualitative partial support for the male-biased sex ratio hypothesis [i.e., RB was more frequent and prevalent in groups with higher ratios of (sub)adult males], whereas the group density hypothesis was not supported. This preliminary study showed that RB is a spontaneous, customary (in some groups), and enduring population-specific practice characterized by intergroup variation in Balinese macaques. As such, RB is a candidate for a new behavioral tradition in this species.

Treatment impacts on temporal microbial community dynamics during phytostabilization of acid-generating mine tailings in semiarid regions.

PubMed

Valentín-Vargas, Alexis; Neilson, Julia W; Root, Robert A; Chorover, Jon; Maier, Raina M

2018-03-15

Direct revegetation, or phytostabilization, is a containment strategy for contaminant metals associated with mine tailings in semiarid regions. The weathering of sulfide ore-derived tailings frequently drives acidification that inhibits plant establishment resulting in materials prone to wind and water dispersal. The specific objective of this study was to associate pyritic mine waste acidification, characterized through pore-water chemistry analysis, with dynamic changes in microbial community diversity and phylogenetic composition, and to evaluate the influence of different treatment strategies on the control of acidification dynamics. Samples were collected from a highly instrumented one-year mesocosm study that included the following treatments: 1) unamended tailings control; 2) tailings amended with 15% compost; and 3) the 15% compost-amended tailings planted with Atriplex lentiformis. Tailings samples were collected at 0, 3, 6 and 12months and pore water chemistry was monitored as an indicator of acidification and weathering processes. Results confirmed that the acidification process for pyritic mine tailings is associated with a temporal progression of bacterial and archaeal phylotypes from pH sensitive Thiobacillus and Thiomonas to communities dominated by Leptospirillum and Ferroplasma. Pore-water chemistry indicated that weathering rates were highest when Leptospirillum was most abundant. The planted treatment was most successful in disrupting the successional evolution of the Fe/S-oxidizing community. Plant establishment stimulated growth of plant-growth-promoting heterotrophic phylotypes and controlled the proliferation of lithoautotrophic Fe/S-oxidizers. The results suggest the potential for eco-engineering a microbial inoculum to stimulate plant establishment and inhibit proliferation of the most efficient Fe/S-oxidizing phylotypes. Copyright © 2017 Elsevier B.V. All rights reserved.

A practice of ultra-fine tailings disposal as filling material in a gold mine.

PubMed

Deng, D Q; Liu, L; Yao, Z L; Song, K I-I L; Lao, D Z

2017-07-01

A practice of cemented backfill technology with ultra-fine tailings in a gold mine was comprehensively presented, and a series of tests were conducted in accordance with the peculiar properties of ultra-fine tailings and the mining technology conditions. The test results show that, the tailings from Shuiyindong Gold Mine have a great grinding fineness, with the average particle diameter 22.03 μm, in which the ultra-fine particles with the diameter below 20 μm occupying 66.13%. The analysis results of chemical components of tailings indicate that the content of SiO 2 is relatively low, i.e., 33.08%, but the total content of CaO, MgO and Al 2 O 3 is relatively high i.e., 36.5%. After the settlement of 4-6 h, the tailing slurry with the initial concentration of 40% has the maximum settling concentration of 54.692%, and the corresponding maximum settling unit weight is 1.497 g/cm 3 . During the field application, the ultra-fine tailings and PC32.5 cement were mixed with the cement-tailings ratios of 1:3-1:8, and the slurry concentration of 50 wt% was prepared. Using the slurry pump, the prepared cemented backfill slurries flowed into the goaf, and then the strength of the cemented backfill body met the mining technique requirements in Shuiyindong Gold Mine, where the ore body has a smooth occurrence, with the average thickness of approximately 2 m and the inclination angle ranging from 5 to 10°. Copyright © 2017 Elsevier Ltd. All rights reserved.

Endogenous DNA damage and testicular germ cell tumors

PubMed Central

Cook, Michael B.; Sigurdson, Alice J.; Jones, Irene M.; Thomas, Cynthia B.; Graubard, Barry I.; Korde, Larissa; Greene, Mark H.; McGlynn, Katherine A.

2008-01-01

Testicular germ cell tumors (TGCT) are comprised of two histologic groups, seminomas and nonseminomas. We postulated that the possible divergent pathogeneses of these histologies may be partially explained by variable levels of net endogenous DNA damage. To test our hypothesis, we conducted a case-case analysis of 51 seminoma and 61 nonseminoma patients using data and specimens from the Familial Testicular Cancer study and the U.S. Radiologic Technologists cohort. A lymphoblastoid cell line was cultured for each patient and the alkaline comet assay was used to determine four parameters: tail DNA, tail length, comet distributed moment (CDM) and Olive tail moment (OTM). Odds ratios (OR) and 95% confidence intervals (95%CI) were estimated using logistic regression. Values for tail length, tail DNA, CDM and OTM were modeled as categorical variables using the 50th and 75th percentiles of the seminoma group. Tail DNA was significantly associated with nonseminoma compared to seminoma (OR50th percentile=3.31, 95%CI: 1.00, 10.98; OR75th percentile=3.71, 95%CI: 1.04, 13.20; p for trend=0.039). OTM exhibited similar, albeit statistically non-significant, risk estimates (OR50th percentile=2.27, 95%CI: 0.75, 6.87; OR75th percentile=2.40, 95%CI: 0.75, 7.71; p for trend=0.12) whereas tail length and CDM showed no association. In conclusion, the results for tail DNA and OTM indicate that net endogenous levels are higher in patients who develop nonseminoma compared with seminoma. This may partly explain the more aggressive biology and younger age-of-onset of this histologic subgroup compared with the relatively less aggressive, later-onset seminoma. PMID:18657195

A protocol to correct for intra- and interspecific variation in tail hair growth to align isotope signatures of segmentally cut tail hair to a common time line.

PubMed

Burnik Šturm, Martina; Pukazhenthi, Budhan; Reed, Dolores; Ganbaatar, Oyunsaikhan; Sušnik, Stane; Haymerle, Agnes; Voigt, Christian C; Kaczensky, Petra

2015-06-15

In recent years, segmental stable isotope analysis of hair has been a focus of research in animal dietary ecology and migration. To correctly assign tail hair segments to seasons or even Julian dates, information on tail hair growth rates is a key parameter, but is lacking for most species. We (a) reviewed the literature on tail hair growth rates in mammals; b) made own measurements of three captive equid species; (c) measured δ(2)H, δ(13)C and δ(15)N values in sequentially cut tail hairs of three sympatric, free-ranging equids from the Mongolian Gobi, using isotope ratio mass spectrometry (IRMS); and (d) collected environmental background data on seasonal variation by measuring δ(2)H values in precipitation by IRMS and by compiling pasture productivity measured by remote sensing via the normalized difference vegetation index (NDVI). Tail hair growth rates showed significant inter- and intra-specific variation making temporal alignment problematic. In the Mongolian Gobi, high seasonal variation of δ(2)H values in precipitation results in winter lows and summer highs of δ(2)H values of available water sources. In water-dependent equids, this seasonality is reflected in the isotope signatures of sequentially cut tails hairs. In regions which are subject to strong seasonal patterns we suggest identifying key isotopes which show strong seasonal variation in the environment and can be expected to be reflected in the animal tissue. The known interval between the maxima and minima of these isotope values can then be used to correctly temporally align the segmental stable isotope signature for each individual animal. © 2015 The Authors. Rapid Communications in Mass Spectrometry published by John Wiley & Sons Ltd.

A protocol to correct for intra- and interspecific variation in tail hair growth to align isotope signatures of segmentally cut tail hair to a common time line

PubMed Central

Burnik Šturm, Martina; Pukazhenthi, Budhan; Reed, Dolores; Ganbaatar, Oyunsaikhan; Sušnik, Stane; Haymerle, Agnes; Voigt, Christian C; Kaczensky, Petra

2015-01-01

Rationale In recent years, segmental stable isotope analysis of hair has been a focus of research in animal dietary ecology and migration. To correctly assign tail hair segments to seasons or even Julian dates, information on tail hair growth rates is a key parameter, but is lacking for most species. Methods We (a) reviewed the literature on tail hair growth rates in mammals; b) made own measurements of three captive equid species; (c) measured δ2H, δ13C and δ15N values in sequentially cut tail hairs of three sympatric, free-ranging equids from the Mongolian Gobi, using isotope ratio mass spectrometry (IRMS); and (d) collected environmental background data on seasonal variation by measuring δ2H values in precipitation by IRMS and by compiling pasture productivity measured by remote sensing via the normalized difference vegetation index (NDVI). Results Tail hair growth rates showed significant inter- and intra-specific variation making temporal alignment problematic. In the Mongolian Gobi, high seasonal variation of δ2H values in precipitation results in winter lows and summer highs of δ2H values of available water sources. In water-dependent equids, this seasonality is reflected in the isotope signatures of sequentially cut tails hairs. Conclusions In regions which are subject to strong seasonal patterns we suggest identifying key isotopes which show strong seasonal variation in the environment and can be expected to be reflected in the animal tissue. The known interval between the maxima and minima of these isotope values can then be used to correctly temporally align the segmental stable isotope signature for each individual animal. © 2015 The Authors. Rapid Communications in Mass Spectrometry published by John Wiley & Sons Ltd. PMID:26044272

Microbial communities in a porphyry copper tailings impoundment and their impact on the geochemical dynamics of the mine waste.

PubMed

Diaby, Nouhou; Dold, Bernhard; Pfeifer, Hans-Rudolf; Holliger, Christof; Johnson, D Barrie; Hallberg, Kevin B

2007-02-01

The distribution and diversity of acidophilic bacteria of a tailings impoundment at the La Andina copper mine, Chile, was examined. The tailings have low sulfide (1.7% pyrite equivalent) and carbonate (1.4% calcite equivalent) contents and are stratified into three distinct zones: a surface (0-70-80 cm) 'oxidation zone' characterized by low-pH (2.5-4), a 'neutralization zone' (70-80 to 300-400 cm) and an unaltered 'primary zone' below 400 cm. A combined cultivation-dependent and biomolecular approach (terminal restriction enzyme fragment length polymorphism and 16S rRNA clone library analysis) was used to characterize the indigenous prokaryotic communities in the mine tailings. Total cell counts showed that the microbial biomass was greatest in the top 125 cm of the tailings. The largest numbers of bacteria (10(9) g(-1) dry weight of tailings) were found at the oxidation front (the junction between the oxidation and neutralization zones), where sulfide minerals and oxygen were both present. The dominant iron-/sulfur-oxidizing bacteria identified at the oxidation front included bacteria of the genus Leptospirillum (detected by molecular methods), and Gram-positive iron-oxidizing acidophiles related to Sulfobacillus (identified both by molecular and cultivation methods). Acidithiobacillus ferrooxidans was also detected, albeit in relatively small numbers. Heterotrophic acidophiles related to Acidobacterium capsulatum were found by molecular methods, while another Acidobacterium-like bacterium and an Acidiphilium sp. were isolated from oxidation zone samples. A conceptual model was developed, based on microbiological and geochemical data derived from the tailings, to account for the biogeochemical evolution of the Piuquenes tailings impoundment.

Use of micro-computed tomography to evaluate the effects of exercise on preventing the degeneration of articular cartilage in tail-suspended rats

NASA Astrophysics Data System (ADS)

Luan, Hui-Qin; Sun, Lian-Wen; Huang, Yun-Fei; Wu, Xin-tong; Niu, Haijun; Liu, Hong; Fan, Yu-Bo

2015-07-01

Space flight has been shown to induce bone loss and muscle atrophy, which could initiate the degeneration of articular cartilage. Countermeasures to prevent bone loss and muscle atrophy have been explored, but few spaceflight or ground-based studies have focused on the effects on cartilage degeneration. In this study, we investigated the effects of exercise on articular cartilage deterioration in tail-suspended rats. Thirty-two female Sprague-Dawley rats were randomly divided into four groups (n = 8 in each): tail suspension (TS), tail suspension plus passive motion (TSP), tail suspension plus active exercise (TSA), and control (CON) groups. In the TS, TSP, and TSA groups, the rat hindlimbs were unloaded for 21 days by tail suspension. Next, the cartilage thickness and volume, and the attenuation coefficient of the distal femur were evaluated by micro-computed tomography (μCT). Histological analysis was used to assess the surface integrity of the cartilage, cartilage thickness, and chondrocytes. The results showed that: (1) the cartilage thickness on the distal femur was significantly lower in the TS and TSP groups compared with the CON and TSA groups; (2) the cartilage volume in the TS group was significantly lower compared with the CON, TSA, and TSP groups; and (3) histomorphology showed that the chondrocytes formed clusters where the degree of matrix staining was lower in the TS and TSP groups. There were no significant differences between any of these parameters in the CON and TSA groups. The cartilage thickness measurements obtained by μCT and histomorphology correlated well. In general, tail suspension could induce articular cartilage degeneration, but active exercise was effective in preventing this degeneration in tail-suspended rats.

Testing for multifractality of Islamic stock markets

NASA Astrophysics Data System (ADS)

Saâdaoui, Foued

2018-04-01

Studying the power-law scaling of financial time series is a promising area of econophysics, which has often contributed to the understanding of the intricate features of the global markets. In this article, we examine the multifractality of some financial processes and the underlying formation mechanisms in the context of Islamic equity markets. The well-known Multifractal Detrended Fluctuation Analysis (MF-DFA) is used to investigate the self-similar properties of two Dow Jones Islamic Market Indexes (DJIM). The results prove that both indexes exhibit multifractal properties. By discussing the sources of multifractality, we find that they are related to the occurrence of extreme events, long-range dependency of autocorrelations and fat-tailed distribution of returns. These results have several important implications for analysts and decision makers in modeling the dynamics of Islamic markets, thus recommending efficient asset allocation plans to investors dealing with Islamic equity markets.

Superdiffusive motion of membrane-targeting C2 domains

NASA Astrophysics Data System (ADS)

Campagnola, Grace; Nepal, Kanti; Schroder, Bryce W.; Peersen, Olve B.; Krapf, Diego

2015-12-01

Membrane-targeting domains play crucial roles in the recruitment of signalling molecules to the plasma membrane. For most peripheral proteins, the protein-to-membrane interaction is transient. After proteins dissociate from the membrane they have been observed to rebind following brief excursions in the bulk solution. Such membrane hops can have broad implications for the efficiency of reactions on membranes. We study the diffusion of membrane-targeting C2 domains using single-molecule tracking in supported lipid bilayers. The ensemble-averaged mean square displacement (MSD) exhibits superdiffusive behaviour. However, traditional time-averaged MSD analysis of individual trajectories remains linear and does not reveal superdiffusion. Our observations are explained in terms of bulk excursions that introduce jumps with a heavy-tail distribution. These hopping events allow proteins to explore large areas in a short time. The experimental results are shown to be consistent with analytical models of bulk-mediated diffusion and numerical simulations.

Predicting arsenic concentrations in porewaters of buried uranium mill tailings

DOE Office of Scientific and Technical Information (OSTI.GOV)

Langmuir, D.; Mahoney, J.; MacDonald, A.

The proposed JEB Tailings Management Facility (TMF) to be emplaced below the groundwater table in northern Saskatchewan, Canada, will contain uranium mill tailings from McClean Lake, Midwest and Cigar Lake ore bodies, which are high in arsenic (up to 10%) and nickel (up to 5%). A serious concern is the possibility that high arsenic and nickel concentrations may be released from the buried tailings, contaminating adjacent groundwaters and a nearby lake. Laboratory tests and geochemical modeling were performed to examine ways to reduce the arsenic and nickel concentrations in TMF porewaters so as to minimize such contamination from tailings buriedmore » for 50 years and longer. The tests were designed to mimic conditions in the mill neutralization circuit (3 hr tests at 25 C), and in the TMF after burial (5--49 day aging tests). The aging tests were run at 50, 25 and 4 C (the temperature in the TMF). In order to optimize the removal of arsenic by adsorption and precipitation, ferric sulfate was added to tailings raffinates having Fe/As ratios of less than 3--5. The acid raffinates were then neutralized by addition of slaked lime to nominal pH values of 7, 8, or 9. Analysis and modeling of the test results showed that with slaked lime addition to acid tailings raffinates, relatively amorphous scorodite (ferric arsenate) precipitates near pH 1, and is the dominant form of arsenate in slake limed tailings solids except those high in Ni and As and low in Fe, in which cabrerite-annabergite (Ni, Mg, Fe(II) arsenate) may also precipitate near pH 5--6. In addition to the arsenate precipitates, smaller amounts of arsenate are also adsorbed onto tailings solids. The aging tests showed that after burial of the tailings, arsenic concentrations may increase with time from the breakdown of the arsenate phases (chiefly scorodite). However, the tests indicate that the rate of change decreases and approaches zero after 72 hrs at 25 C, and may equal zero at all times in the TMF at 4 C. Consistent with a kinetic model that describes the rate of breakdown of scorodite to form hydrous ferric oxide, the rate of release of dissolved arsenate to tailings porewaters from slake limed tailings: (1) is proportional to pH above pH 6--7; (2) decreases exponentially as the total molar Fe/As ratio of tailings raffinates is increased from 1/1 to greater than 5/1; and (3) is proportional to temperature with an average Arrhenius activation energy of 13.4 {+-} 4.2 kcal/mol. Study results suggest that if ferric sulfate and slaked lime are added in the tailings neutralization circuit to give a raffinate Fe/As molar ratio of at least 3--5 and a nominal (initial) pH of 8 (final pH of 7--8), arsenic and nickel concentrations of 2 mg/L or less, are probable in porewaters of individual tailings in the TMF for 50 to 10,000 yrs after tailings disposal. However, the tailings will be mixed in the TMF, which will contain about 35% tailings with Fe/As = 3.0, and 65% tailings with Fe/As = 5.0--7.7. Thus, it seems likely that average arsenic pore water concentrations in the TMF may not exceed 1 mg/L.« less

First stable isotope analysis of Asiatic wild ass tail hair from the Mongolian Gobi.

PubMed

Horacek, Micha; Sturm, Martina Burnik; Kaczensky, Petra

Stable isotope analysis has become a powerful tool to study feeding ecology, water use or movement pattern in contemporary, historic and ancient species. Certain hair and teeth grow continuously, and when sampled longitudinally can provide temporally explicit information on dietary regime and movement pattern. In an initial trial, we analysed a tail sample of an Asiatic wild ass ( Equus hemionus ) from the Mongolian Gobi. We found seasonal variations in H, C and N isotope patterns, likely being the result of temporal variations in available feeds, water supply and possibly physiological status. Thus stable isotope analysis shows promise to study the comparative ecology of the three autochthonous equid species in the Mongolian Gobi.

Modeling short duration extreme precipitation patterns using copula and generalized maximum pseudo-likelihood estimation with censoring

NASA Astrophysics Data System (ADS)

Bargaoui, Zoubeida Kebaili; Bardossy, Andràs

2015-10-01

The paper aims to develop researches on the spatial variability of heavy rainfall events estimation using spatial copula analysis. To demonstrate the methodology, short time resolution rainfall time series from Stuttgart region are analyzed. They are constituted by rainfall observations on continuous 30 min time scale recorded over a network composed by 17 raingages for the period July 1989-July 2004. The analysis is performed aggregating the observations from 30 min up to 24 h. Two parametric bivariate extreme copula models, the Husler-Reiss model and the Gumbel model are investigated. Both involve a single parameter to be estimated. Thus, model fitting is operated for every pair of stations for a giving time resolution. A rainfall threshold value representing a fixed rainfall quantile is adopted for model inference. Generalized maximum pseudo-likelihood estimation is adopted with censoring by analogy with methods of univariate estimation combining historical and paleoflood information with systematic data. Only pairs of observations greater than the threshold are assumed as systematic data. Using the estimated copula parameter, a synthetic copula field is randomly generated and helps evaluating model adequacy which is achieved using Kolmogorov Smirnov distance test. In order to assess dependence or independence in the upper tail, the extremal coefficient which characterises the tail of the joint bivariate distribution is adopted. Hence, the extremal coefficient is reported as a function of the interdistance between stations. If it is less than 1.7, stations are interpreted as dependent in the extremes. The analysis of the fitted extremal coefficients with respect to stations inter distance highlights two regimes with different dependence structures: a short spatial extent regime linked to short duration intervals (from 30 min to 6 h) with an extent of about 8 km and a large spatial extent regime related to longer rainfall intervals (from 12 h to 24 h) with an extent of 34 to 38 km.

Identifying and quantifying proteolytic events and the natural N terminome by terminal amine isotopic labeling of substrates.

PubMed

Kleifeld, Oded; Doucet, Alain; Prudova, Anna; auf dem Keller, Ulrich; Gioia, Magda; Kizhakkedathu, Jayachandran N; Overall, Christopher M

2011-09-22

Analysis of the sequence and nature of protein N termini has many applications. Defining the termini of proteins for proteome annotation in the Human Proteome Project is of increasing importance. Terminomics analysis of protease cleavage sites in degradomics for substrate discovery is a key new application. Here we describe the step-by-step procedures for performing terminal amine isotopic labeling of substrates (TAILS), a 2- to 3-d (depending on method of labeling) high-throughput method to identify and distinguish protease-generated neo-N termini from mature protein N termini with all natural modifications with high confidence. TAILS uses negative selection to enrich for all N-terminal peptides and uses primary amine labeling-based quantification as the discriminating factor. Labeling is versatile and suited to many applications, including biochemical and cell culture analyses in vitro; in vivo analyses using tissue samples from animal and human sources can also be readily performed. At the protein level, N-terminal and lysine amines are blocked by dimethylation (formaldehyde/sodium cyanoborohydride) and isotopically labeled by incorporating heavy and light dimethylation reagents or stable isotope labeling with amino acids in cell culture labels. Alternatively, easy multiplex sample analysis can be achieved using amine blocking and labeling with isobaric tags for relative and absolute quantification, also known as iTRAQ. After tryptic digestion, N-terminal peptide separation is achieved using a high-molecular-weight dendritic polyglycerol aldehyde polymer that binds internal tryptic and C-terminal peptides that now have N-terminal alpha amines. The unbound naturally blocked (acetylation, cyclization, methylation and so on) or labeled mature N-terminal and neo-N-terminal peptides are recovered by ultrafiltration and analyzed by tandem mass spectrometry (MS/MS). Hierarchical substrate winnowing discriminates substrates from the background proteolysis products and non-cleaved proteins by peptide isotope quantification and bioinformatics search criteria.

Correlational selection leads to genetic integration of body size and an attractive plumage trait in dark-eyed juncos.

PubMed

McGlothlin, Joel W; Parker, Patricia G; Nolan, Val; Ketterson, Ellen D

2005-03-01

When a trait's effect on fitness depends on its interaction with other traits, the resultant selection is correlational and may lead to the integration of functionally related traits. In relation to sexual selection, when an ornamental trait interacts with phenotypic quality to determine mating success, correlational sexual selection should generate genetic correlations between the ornament and quality, leading to the evolution of honest signals. Despite its potential importance in the evolution of signal honesty, correlational sexual selection has rarely been measured in natural populations. In the dark-eyed junco (Junco hyemalis), males with experimentally elevated values of a plumage trait (whiteness in the tail or "tail white") are more attractive to females and dominant in aggressive encounters over resources. We used restricted maximum-likelihood analysis of a long-term dataset to measure the heritability of tail white and two components of body size (wing length and tail length), as well as genetic correlations between pairs of these traits. We then used multiple regression to assess directional, quadratic, and correlational selection as they acted on tail white and body size via four components of lifetime fitness (juvenile and adult survival, mating success, and fecundity). We found a positive genetic correlation between tail white and body size (as measured by wing length), which indicates past correlational selection. Correlational selection, which was largely due to sexual selection on males, was also found to be currently acting on the same pair of traits. Larger males with whiter tails sired young with more females, most likely due to a combination of female choice, which favors males with whiter tails, and male-male competition, which favors both tail white and larger body size. To our knowledge, this is the first study to show both genetic correlations between sexually selected traits and currently acting correlational sexual selection, and we suggest that correlational sexual selection frequently may be an important mechanism for maintaining the honesty of sexual signals.

Environmental hazard assessment of a marine mine tailings deposit site and potential implications for deep-sea mining.

PubMed

Mestre, Nélia C; Rocha, Thiago L; Canals, Miquel; Cardoso, Cátia; Danovaro, Roberto; Dell'Anno, Antonio; Gambi, Cristina; Regoli, Francesco; Sanchez-Vidal, Anna; Bebianno, Maria João

2017-09-01

Portmán Bay is a heavily contaminated area resulting from decades of metal mine tailings disposal, and is considered a suitable shallow-water analogue to investigate the potential ecotoxicological impact of deep-sea mining. Resuspension plumes were artificially created by removing the top layer of the mine tailings deposit by bottom trawling. Mussels were deployed at three sites: i) off the mine tailings deposit area; ii) on the mine tailings deposit beyond the influence from the resuspension plumes; iii) under the influence of the artificially generated resuspension plumes. Surface sediment samples were collected at the same sites for metal analysis and ecotoxicity assessment. Metal concentrations and a battery of biomarkers (oxidative stress, metal exposure, biotransformation and oxidative damage) were measured in different mussel tissues. The environmental hazard posed by the resuspension plumes was investigated by a quantitative weight of evidence (WOE) model that integrated all the data. The resuspension of sediments loaded with metal mine tails demonstrated that chemical contaminants were released by trawling subsequently inducing ecotoxicological impact in mussels' health. Considering as sediment quality guidelines (SQGs) those indicated in Spanish action level B for the disposal of dredged material at sea, the WOE model indicates that the hazard is slight off the mine tailings deposit, moderate on the mine tailings deposit without the influence from the resuspension plumes, and major under the influence of the resuspension plumes. Portmán Bay mine tailings deposit is a by-product of sulphide mining, and despite differences in environmental setting, it can reflect the potential ecotoxic effects to marine fauna from the impact of resuspension of plumes created by deep-sea mining of polymetallic sulphides. A similar approach as in this study could be applied in other areas affected by sediment resuspension and for testing future deep-sea mining sites in order to assess the associated environmental hazards. Copyright © 2017 Elsevier Ltd. All rights reserved.

Assessment of Phytostabilization Success in Metalliferous Acid Mine Tailings

NASA Astrophysics Data System (ADS)

Wang, Y.; Root, R. A.; Hammond, C.; Amistadi, M. K.; Maier, R. M.; Chorover, J.

2014-12-01

Legacy mine tailings are a significant source of metal(loid)s due to wind and water erosion, especially in the arid southwest, and exposure to fugative dusts presents a health risk to surrounding populations. Compost assisted phytostabilization has been implemented to reduce off site emissions at the Iron King Mine U.S. Superfund Site in central Arizona, concurrent with a greenhouse mesocosm study for detailed study of subsurface mechanisms. Quantification of plant available toxic metal(loid)s in the amended tailings was accessed with a targeted single extraction of diethylenetriaminepentaactic acid (DTPA). Greenhouse mesocosms (1m dia, 0.4 m deep), run in triplicate, mimicked field treatments with: i) tailings only control (TO), ii) tailings plus 15 wt% compost (TC), iii) TC + quailbush seeds (TCA), and iv) TC + buffalo grass seeds (TCB). Core samples collected at 3-month intervals for 1 year were dissected by depth (10 cm each) for analysis. DTPA results indicated that compost treated samples decreased plant availability of Al, As, Cd, Cu, Fe, and Pb but increased Mn and Zn compared with TO. TCB decreased plant available metal(loid)s at all depths, whereas TCA plant available Al, As, Cd, Cu, Fe, Mn and Zn increased in the deeper 20-30cm and 30-40 cm relative to TCB. Samples from the greenhouse were compared to tailings from both the field site and tailings impacted soils used to grow vegetables. Mineral transformations and metal complexation, in the pre- and post-extracted tailings were analyzed by synchrotron transmission XRD and FTIR spectroscopy. The temporal change in plant available metal(loid)s in response to phytostabilization indicates mineralogical alteration that improves soil quality by reducing plant available metal(loid)s. These results will aid in the understanding and efficacy of phytostabilization as a means of remediating and reducing toxicity on mine tailings as well as providing information on health risk management in the region.

Black swans and dragon kings: A unified model

NASA Astrophysics Data System (ADS)

Eliazar, Iddo

2017-09-01

The term “black swan” is a metaphor for outlier events whose statistics are characterized by Pareto's Law and by Zipf's Law; namely, statistics governed by power-law tails. The term “dragon king” is a metaphor for a singular outlier event which, in comparison with all other outlier events, is in a league of its own. As an illustrative example consider the wealth of a family that is sampled at random from a medieval society: the nobility constitutes the black-swan category, and the royal family constitutes the dragon-king category. In this paper we present and analyze a dynamical model that generates, universally and jointly, black swans and dragon kings. According to this model, growing from the microscopic scale to the macroscopic scale, black swans and dragon kings emerge together and invariantly with respect to initial conditions.

New Insights into the Estimation of Extreme Geomagnetic Storm Occurrences

NASA Astrophysics Data System (ADS)

Ruffenach, Alexis; Winter, Hugo; Lavraud, Benoit; Bernardara, Pietro

2017-04-01

Space weather events such as intense geomagnetic storms are major disturbances of the near-Earth environment that may lead to serious impacts on our modern society. As such, it is of great importance to estimate their probability, and in particular that of extreme events. One approach largely used in statistical sciences for extreme events probability estimates is Extreme Value Analysis (EVA). Using this rigorous statistical framework, estimations of the occurrence of extreme geomagnetic storms are performed here based on the most relevant global parameters related to geomagnetic storms, such as ground parameters (e.g. geomagnetic Dst and aa indexes), and space parameters related to the characteristics of Coronal Mass Ejections (CME) (velocity, southward magnetic field component, electric field). Using our fitted model, we estimate the annual probability of a Carrington-type event (Dst = -850nT) to be on the order of 10-3, with a lower limit of the uncertainties on the return period of ˜500 years. Our estimate is significantly higher than that of most past studies, which typically had a return period of a few 100 years at maximum. Thus precautions are required when extrapolating intense values. Currently, the complexity of the processes and the length of available data inevitably leads to significant uncertainties in return period estimates for the occurrence of extreme geomagnetic storms. However, our application of extreme value models for extrapolating into the tail of the distribution provides a mathematically justified framework for the estimation of extreme return periods, thereby enabling the determination of more accurate estimates and reduced associated uncertainties.

Characterization of physical mass transport through oil sands fluid fine tailings in an end pit lake: a multi-tracer study.

PubMed

Dompierre, Kathryn A; Barbour, S Lee

2016-06-01

Soft tailings pose substantial challenges for mine reclamation due to their high void ratios and low shear strengths, particularly for conventional terrestrial reclamation practices. Oil sands mine operators have proposed the development of end pit lakes to contain the soft tailings, called fluid fine tailings (FFT), generated when bitumen is removed from oil sands ore. End pit lakes would be constructed within mined-out pits with FFT placed below the lake water. However, the feasibility of isolating the underlying FFT has yet to be fully evaluated. Chemical constituents of interest may move from the FFT into the lake water via two key processes: (1) advective-diffusive mass transport with upward pore water flow caused by settling of the FFT; and (2) mixing created by wind events or unstable density profiles through the lake water and upper portion of the FFT. In 2013 and 2014, temperature and stable isotopes of water profiles were measured through the FFT and lake water in the first end pit lake developed by Syncrude Canada Ltd. Numerical modelling was undertaken to simulate these profiles to identify the key mechanisms controlling conservative mass transport in the FFT. Shallow mixing of the upper 1.1 m of FFT with lake water was required to explain the observed temperature and isotopic profiles. Following mixing, the re-establishment of both the temperature and isotope profiles required an upward advective flux of approximately 1.5 m/year, consistent with average FFT settling rates measured at the study site. These findings provide important insight on the ability to sequester soft tailings in an end pit lake, and offer a foundation for future research on the development of end pit lakes as an oil sands reclamation strategy. Copyright © 2016 Elsevier B.V. All rights reserved.

High levels of activity of bats at gold mining water bodies: implications for compliance with the International Cyanide Management Code.

PubMed

Griffiths, Stephen R; Donato, David B; Coulson, Graeme; Lumsden, Linda F

2014-06-01

Wildlife and livestock are known to visit and interact with tailings dam and other wastewater impoundments at gold mines. When cyanide concentrations within these water bodies exceed a critical toxicity threshold, significant cyanide-related mortality events can occur in wildlife. Highly mobile taxa such as birds are particularly susceptible to cyanide toxicosis. Nocturnally active bats have similar access to uncovered wastewater impoundments as birds; however, cyanide toxicosis risks to bats remain ambiguous. This study investigated activity of bats in the airspace above two water bodies at an Australian gold mine, to assess the extent to which bats use these water bodies and hence are at potential risk of exposure to cyanide. Bat activity was present on most nights sampled during the 16-month survey period, although it was highly variable across nights and months. Therefore, despite the artificial nature of wastewater impoundments at gold mines, these structures present attractive habitats to bats. As tailings slurry and supernatant pooling within the tailings dam were consistently well below the industry protective concentration limit of 50 mg/L weak acid dissociable (WAD) cyanide, wastewater solutions stored within the tailings dam posed a minimal risk of cyanide toxicosis for wildlife, including bats. This study showed that passively recorded bat echolocation call data provides evidence of the presence and relative activity of bats above water bodies at mine sites. Furthermore, echolocation buzz calls recorded in the airspace directly above water provide indirect evidence of foraging and/or drinking. Both echolocation monitoring and systematic sampling of cyanide concentration in open wastewater impoundments can be incorporated into a gold mine risk-assessment model in order to evaluate the risk of bat exposure to cyanide. In relation to risk minimisation management practices, the most effective mechanism for preventing cyanide toxicosis to wildlife, including bats, is capping the concentration of cyanide in tailings discharged to open impoundments at 50 mg/L WAD.

Cluster Observations of Multiple Dipolarization Fronts

NASA Technical Reports Server (NTRS)

Hwang, Kyoung-Joo; Goldstein, Melvyn L.; Lee, Ensang; Pickett, Jolene S.

2011-01-01

We present Cluster observations of a series of dipolarization fronts (DF 1 to 6) at the central current sheet in Earth's magnetotail. The velocities of fast earthward flow following behind each DF 1-3, are comparable to the Alfven velocity, indicating that the flow bursts might have been generated by bursty reconnection that occurred tailward of the spacecraft. Based on multi-spacecraft timing analysis, DF normals are found to propagate mainly earthward at $160-335$ km/s with a thickness of 900-1500 km, which corresponds to the ion inertial length or gyroradius scale. Each DF is followed by significant fluctuations in the $x$ and $y$ components of the magnetic field whose peaks are found 1-2 minutes after the DF passage. These $(B_{x},B_{y} )$-fluctuations propagate dawnward (mainly) and earthward. Strongly enhanced field-aligned beams are observed coincidently with $(B_{x},B_{y})$ fluctuations, while an enhancement of cross-tail currents is associated with the DFs. From the observed pressure imbalance and flux-tube entropy changes between the two regions separated by the DF, we speculate that interchange instability destabilizes the DFs and causes the deformation of the mid-tail magnetic topology. This process generates significant field-aligned currents, and might power the auroral brightening in the ionosphere. However, this event is neither associated with the main substorm auroral breakup nor the poleward expansion, which might indicate that the observed multiple DFs have been dissipated before they reach the inner plasma sheet boundary.

Anatomy of a Merger: A Deep Chandra Observation of Abell 115

NASA Astrophysics Data System (ADS)

Forman, William R.

2017-08-01

A deep Chandra observation of Abell 115 provides a unique probe of the anatomy of cluster mergers. The X-ray image shows two prominent subclusters, A115N (north) and A115S (south) with a projected separation of almost 1 Mpc. The X-ray subclusters each have ram-pressure stripped tails that unambiguously indicate the directions of motion. The central BCG of A115N hosts the radio source 3C28 which shows a pair of jets, almost perpendicular to the direction of the sucluster's motion. The jets terminate in lobes each of which has a "tail" pointing IN the direction of motion of the subcluster. The Chandra analysis provides details of the merger including the velocities of the subclusters both through analysis of the cold front and a weak shock. The motion of A115N through the cluster generates counter-rotating vortices in the subcluster gas that form the two radio tails. Hydrodynamic modeling yields circulation velocities within the A115N sub cluster. Thus, the radio emitting plasma acts as a dye tracing the motions of the X-ray emitting plasma. A115S shows two "cores", one coincident with the BCG and a second appears as a ram pressure stripped tail.

Self-organisation of random oscillators with Lévy stable distributions

NASA Astrophysics Data System (ADS)

Moradi, Sara; Anderson, Johan

2017-08-01

A novel possibility of self-organized behaviour of stochastically driven oscillators is presented. It is shown that synchronization by Lévy stable processes is significantly more efficient than that by oscillators with Gaussian statistics. The impact of outlier events from the tail of the distribution function was examined by artificially introducing a few additional oscillators with very strong coupling strengths and it is found that remarkably even one such rare and extreme event may govern the long term behaviour of the coupled system. In addition to the multiplicative noise component, we have investigated the impact of an external additive Lévy distributed noise component on the synchronisation properties of the oscillators.

Modeling of long range frequency sweeping for energetic particle modes

NASA Astrophysics Data System (ADS)

Nyqvist, R. M.; Breizman, B. N.

2013-04-01

Long range frequency sweeping events are simulated numerically within a one-dimensional, electrostatic bump-on-tail model with fast particle sources and collisions. The numerical solution accounts for fast particle trapping and detrapping in an evolving wave field with a fixed wavelength, and it includes three distinct collisions operators: Drag (dynamical friction on the background electrons), Krook-type collisions, and velocity space diffusion. The effects of particle trapping and diffusion on the evolution of holes and clumps are investigated, and the occurrence of non-monotonic (hooked) frequency sweeping and asymptotically steady holes is discussed. The presented solution constitutes a step towards predictive modeling of frequency sweeping events in more realistic geometries.

A magnetospheric magnetic field model with flexible current systems driven by independent physical parameters

NASA Technical Reports Server (NTRS)

Hilmer, Robert V.; Voigt, Gerd-Hannes

1995-01-01

A tilt-dependent magnetic field model of the Earth's magnetosphere with variable magnetopause standoff distance is presented. Flexible analytic representations for the ring and cross-tail currents, each composed of the elements derived from the Tsyganenko and Usmanov (1982) model, are combined with the fully shielded vacuum dipole configurations of Voigt (1981). Although the current sheet does not warp in the y-z plane, changes in the shape and position of the neutral sheet with dipole tilt are consistent with both MHD equilibrium theory and observations. In addition, there is good agreement with observed Delta B profiles and the average equatorial contours of magnetic field magnitude. While the dipole field is rigorously shielded within the defined magnetopause, the ring and cross-tails currents are not similarly confined, consequently, the model's region of validity is limited to the inner magnetosphere. The model depends on four independent external parameters. We present a simple but limited method of simulating several substorm related magnetic field changes associated with the disrupion of the near-Earth cross-tail current sheet and collapse of the midnight magnetotail field region. This feature further facilitates the generation of magnetic field configuration time sequences useful in plasma convection simulations of real magnetospheric events.

Evidence for Multiple Mediator Complexes in Yeast Independently Recruited by Activated Heat Shock Factor

PubMed Central

Anandhakumar, Jayamani; Moustafa, Yara W.; Chowdhary, Surabhi; Kainth, Amoldeep S.

2016-01-01

Mediator is an evolutionarily conserved coactivator complex essential for RNA polymerase II transcription. Although it has been generally assumed that in Saccharomyces cerevisiae, Mediator is a stable trimodular complex, its structural state in vivo remains unclear. Using the “anchor away” (AA) technique to conditionally deplete select subunits within Mediator and its reversibly associated Cdk8 kinase module (CKM), we provide evidence that Mediator's tail module is highly dynamic and that a subcomplex consisting of Med2, Med3, and Med15 can be independently recruited to the regulatory regions of heat shock factor 1 (Hsf1)-activated genes. Fluorescence microscopy of a scaffold subunit (Med14)-anchored strain confirmed parallel cytoplasmic sequestration of core subunits located outside the tail triad. In addition, and contrary to current models, we provide evidence that Hsf1 can recruit the CKM independently of core Mediator and that core Mediator has a role in regulating postinitiation events. Collectively, our results suggest that yeast Mediator is not monolithic but potentially has a dynamic complexity heretofore unappreciated. Multiple species, including CKM-Mediator, the 21-subunit core complex, the Med2-Med3-Med15 tail triad, and the four-subunit CKM, can be independently recruited by activated Hsf1 to its target genes in AA strains. PMID:27185874

Identification of Variant-Specific Functions of PIK3CA by Rapid Phenotyping of Rare Mutations | Office of Cancer Genomics

Cancer.gov

Large-scale sequencing efforts are uncovering the complexity of cancer genomes, which are composed of causal "driver" mutations that promote tumor progression along with many more pathologically neutral "passenger" events. The majority of mutations, both in known cancer drivers and uncharacterized genes, are generally of low occurrence, highlighting the need to functionally annotate the long tail of infrequent mutations present in heterogeneous cancers.

Coronae on stars

NASA Technical Reports Server (NTRS)

Haisch, B. M.

1986-01-01

Three lines of evidence are noted to point to a flare heating source for stellar coronae: a strong correlation between time-averaged flare energy release and coronal X-ray luminosity, the high temperature flare-like component of the spectral signature of coronal X-ray emission, and the observed short time scale variability that indicates continuous flare activity. It is presently suggested that flares may represent only the extreme high energy tail of a continuous distribution of coronal energy release events.

Large and unexpected runup events and their relation to the incident wave field

NASA Astrophysics Data System (ADS)

Li, C.; Ozkan-Haller, H. T.; Garcia-Medina, G.; Holman, R. A.; Ruggiero, P.

2016-12-01

Unusually large runup events are important for the prediction of dune erosion, inundation and coastal flooding during storms and lie at the tail of swash maxima probability distributions. We also distinguish a unique type of large runup event that is sudden and unexpected even if the landward reach of the runup is not a statistical extreme. These unusual runup events are anecdotally reported to be more prevalent on dissipative beaches and are the leading cause of death by drowning along the U.S. Pacific Northwest (northern California, Oregon, and Washington). Herein we examine the environmental conditions that are conducive to large and unexpected runup events and begin to forecast their potential occurrence, validating these predictions with ongoing observations. We explore and compare the statistics of large runup events on two beach types, a dissipative beach at Agate Beach, OR, and the intermediate/reflective site at Duck, NC. Video-based runup observations along with incident wave information from offshore instrumentation are used to assess how frequently large or unexpected runup events occur, how the statistics of these runup events relate to the incident wave characteristics (e.g. height, period, narrow-bandedness), and whether or not these events are indeed more prevalent on dissipative beaches.

Using Ambystoma mexicanum (Mexican Axolotl) Embryos, Chemical Genetics, and Microarray Analysis to Identify Signaling Pathways Associated with Tissue Regeneration

PubMed Central

Ponomareva, Larissa V.; Athippozhy, Antony; Thorson, Jon S.; Voss, S. Randal

2015-01-01

Amphibian vertebrates are important models in regenerative biology because they present exceptional regenerative capabilities throughout life. However, it takes considerable effort to rear amphibians to juvenile and adult stages for regeneration studies and the relatively large sizes that frogs and salamanders achieve during development make them difficult to use in chemical screens. Here we introduce a new tail regeneration model using late stage Mexican axolotl embryos. We show that axolotl embryos completely regenerate amputated tails in 7 days before they exhaust their yolk supply and begin to feed. Further, we show that axolotl embryos can be efficiently reared in microtiter plates to achieve moderate throughput screening of soluble chemicals to investigate toxicity and identify molecules that alter regenerative outcome. As proof of principle, we identified integration 1 / wingless (Wnt), transforming growth factor beta (Tgf-β), and fibroblast growth factor (Fgf) pathway antagonists that completely block tail regeneration and additional chemicals that significantly affected tail outgrowth. Furthermore, we used microarray analysis to show that inhibition of Wnt signaling broadly affects transcription of genes associated with Wnt, Fgf, Tgf-β, epidermal growth factor (Egf), Notch, nerve growth factor (Ngf), homeotic gene (Hox), rat sarcoma/mitogen-activated protein kinase (Ras/Mapk), myelocytomatosis viral oncogene (Myc), tumor protein 53 (p53), and retinoic acid (RA) pathways. Punctuated changes in the expression of genes known to regulate vertebrate development were observed; this suggests the tail regeneration transcriptional program is hierarchically structured and temporally ordered. Our study establishes the axolotl as a chemical screening model to investigate signaling pathways associated with tissue regeneration. PMID:26092703

Global morphological analysis of marine viruses shows minimal regional variation and dominance of non-tailed viruses

PubMed Central

Brum, Jennifer R; Schenck, Ryan O; Sullivan, Matthew B

2013-01-01

Viruses influence oceanic ecosystems by causing mortality of microorganisms, altering nutrient and organic matter flux via lysis and auxiliary metabolic gene expression and changing the trajectory of microbial evolution through horizontal gene transfer. Limited host range and differing genetic potential of individual virus types mean that investigations into the types of viruses that exist in the ocean and their spatial distribution throughout the world's oceans are critical to understanding the global impacts of marine viruses. Here we evaluate viral morphological characteristics (morphotype, capsid diameter and tail length) using a quantitative transmission electron microscopy (qTEM) method across six of the world's oceans and seas sampled through the Tara Oceans Expedition. Extensive experimental validation of the qTEM method shows that neither sample preservation nor preparation significantly alters natural viral morphological characteristics. The global sampling analysis demonstrated that morphological characteristics did not vary consistently with depth (surface versus deep chlorophyll maximum waters) or oceanic region. Instead, temperature, salinity and oxygen concentration, but not chlorophyll a concentration, were more explanatory in evaluating differences in viral assemblage morphological characteristics. Surprisingly, given that the majority of cultivated bacterial viruses are tailed, non-tailed viruses appear to numerically dominate the upper oceans as they comprised 51–92% of the viral particles observed. Together, these results document global marine viral morphological characteristics, show that their minimal variability is more explained by environmental conditions than geography and suggest that non-tailed viruses might represent the most ecologically important targets for future research. PMID:23635867

Characterising Record Flooding in the United Kingdom

NASA Astrophysics Data System (ADS)

Cox, A.; Bates, P. D.; Smith, J. A.

2017-12-01

Though the most notable floods in history have been carefully explained, there remains a lack of literature that explores the nature of record floods as a whole in the United Kingdom. We characterise the seasonality, statistical and spatial distribution, and meteorological causes of peak river flows for 521 gauging stations spread across the British Isles. We use annual maximum data from the National River Flow Archive, catchment descriptors from the Flood Estimation Handbook, and historical records of large floods. What we aim to find is in what ways, if any, the record flood for a station is different from more 'typical' floods. For each station, we calculate two indices: the seasonal anomaly and the flood index. Broadly, the seasonal anomaly is the degree to which a station's record flood happens at a different time of year compared to typical floods at that site, whilst the flood index is a station's record flood discharge divided by the discharge of the 1-in-10-year return period event. We find that while annual maximum peaks are dominated by winter frontal rainfall, record floods are disproportionately caused by summer convective rainfall. This analysis also shows that the larger the seasonal anomaly, the higher the flood index. Additionally, stations across the country have record floods that occur in the summer with no notable spatial pattern, yet the most seasonally anomalous record events are concentrated around the south and west of the British Isles. Catchment descriptors tell us little about the flood index at a particular station, but generally areas with lower mean annual precipitation have a higher flood index. The inclusion of case studies from recent and historical examples of notable floods across the UK supplements our analysis and gives insight into how typical these events are, both statistically and meteorologically. Ultimately, record floods in general happen at relatively unexpected times and with unpredictable magnitudes, which is a worrying reality for those who live in flood-prone areas, and to those who study the upper tail of flood events.

Influence of C-terminal tail deletion on structure and stability of hyperthermophile Sulfolobus tokodaii RNase HI.

PubMed

Chen, Lin; Zhang, Ji-Long; Zheng, Qing-Chuan; Chu, Wen-Ting; Xue, Qiao; Zhang, Hong-Xing; Sun, Chia-Chung

2013-06-01

The C-terminus tail (G144-T149) of the hyperthermophile Sulfolobus tokodaii (Sto-RNase HI) plays an important role in this protein's hyperstabilization and may therefore be a good protein stability tag. Detailed understanding of the structural and dynamic effects of C-terminus tail deletion is required for gaining insights into the thermal stability mechanism of Sto-RNase HI. Focused on Sulfolobus tokodaii RNase HI (Sto-RNase HI) and its derivative lacking the C-terminal tail (ΔC6 Sto-RNase HI) (PDB codes: 2EHG and 3ALY), we applied molecular dynamics (MD) simulations at four different temperatures (300, 375, 475, and 500 K) to examine the effect of the C-terminal tail on the hyperstabilization of Sto-RNase HI and to investigate the unfolding process of Sto-RNase HI and ΔC6 Sto-RNase HI. The simulations suggest that the C-terminal tail has significant impact in hyperstabilization of Sto-RNase HI and the unfolding of these two proteins evolves along dissimilar pathways. Essential dynamics analysis indicates that the essential subspaces of the two proteins at different temperatures are non-overlapping within the trajectories and they exhibit different directions of motion. Our work can give important information to understand the three-state folding mechanism of Sto-RNase HI and to offer alternative strategies to improve the protein stability.

Quasi-stagnant plasmoid in the middle tail - A new preexpansion phase phenomenon. [in magnetosphere

NASA Technical Reports Server (NTRS)

Nishida, A.; Terasawa, T.; Scholer, M.; Bame, S. J.; Zwickl, R. D.; Gloeckler, G.; Smith, E. J.

1986-01-01

From the analysis of ISEE 3 data it is found that a plasmoid is sometimes formed in the middle tail outside the intervals of the substorm expansion phase. This plasmoid is produced by reconnection at the X-type neutral line, which is located earthward of the distant neutral line but beyond the substorm-associated near-tail neutral line, and it is almost stagnant in that the associated flow speed is less than 300 km/s. The blocking effect of the distant neutral line is the most probable reason for the slow movement. The quasi-stagnant plasmoid is observed at x = -60 to - 100 earth radii for a duration of a few tens of minutes, and in about one half of the cases it is followed by the fast tailward streaming. The onset of this streaming tends to coincide with the onset of the substorm expansion phase, and this probably occurs when the reconnection at the middle-tail neutral line comes close to processing the last closed field line. Intensification of the dawn-to-dusk electric field that causes the mantle plasma to reach the plasma sheet boundary closer to the earth is suggested as the reason for the formation of the middle-tail neutral line earthward of the distant neutral line. The effects on the energetic particle flux and relation to the near-tail reconnection are also discussed.

An Investigation of the Elements which Contribute to Statical and Dynamical Stability, and of the Effects of Variation in Those Elements

NASA Technical Reports Server (NTRS)

Klemin, Alexander; Warner, Edward P; Denkinger, George M

1918-01-01

Part 1 gives details of models tested and methods of testing of the Eiffel 36 wing alone and the JN2 aircraft. Characteristics and performance curves for standard JN are included. Part 2 presents a statistical analysis of the following: lift and drag contributed by body and chassis tested without wings; lift and drag contributed by tail, tested without wings; the effect on lift and drift of interference between the wings of a biplane combination; lift and drag contributed by the addition of body, chassis, and tail to a biplane combination; total parasite resistance; effect of varying size of tail, keeping angle of setting constant; effect of varying length of body and size of tail at the same time, keeping constant moment of tail surface about the center of gravity; forces on the tail and the effects of downwash; effect of size and setting of tail on statical longitudinal stability effects of length of body on stability; the effects of the various elements of an airplane on longitudinal stability and the placing of the force vectors. Part 3 presents the fundamental principals of dynamical stability; computations of resistance derivatives; solution of the stability equation; dynamical stability of the Curtiss JN2; tabulation of resistance derivatives; discussion of the resistance derivatives; formation and solution of stability equations; physical conceptions of the resistance derivatives; elements contributing to damping and an investigation of low speed conditions. Part 4 includes a summary of the results of the statistical investigation and a summary of the results for dynamic stability.

Skeletal muscle regeneration in Xenopus tadpoles and zebrafish larvae

PubMed Central

2012-01-01

Background Mammals are not able to restore lost appendages, while many amphibians are. One important question about epimorphic regeneration is related to the origin of the new tissues and whether they come from mature cells via dedifferentiation and/or from stem cells. Several studies in urodele amphibians (salamanders) indicate that, after limb or tail amputation, the multinucleated muscle fibres do dedifferentiate by fragmentation and proliferation, thereby contributing to the regenerate. In Xenopus laevis tadpoles, however, it was shown that muscle fibres do not contribute directly to the tail regenerate. We set out to study whether dedifferentiation was present during muscle regeneration of the tadpole limb and zebrafish larval tail, mainly by cell tracing and histological observations. Results Cell tracing and histological observations indicate that zebrafish tail muscle do not dedifferentiate during regeneration. Technical limitations did not allow us to trace tadpole limb cells, nevertheless we observed no signs of dedifferentiation histologically. However, ultrastructural and gene expression analysis of regenerating muscle in tadpole tail revealed an unexpected dedifferentiation phenotype. Further histological studies showed that dedifferentiating tail fibres did not enter the cell cycle and in vivo cell tracing revealed no evidences of muscle fibre fragmentation. In addition, our results indicate that this incomplete dedifferentiation was initiated by the retraction of muscle fibres. Conclusions Our results show that complete skeletal muscle dedifferentiation is less common than expected in lower vertebrates. In addition, the discovery of incomplete dedifferentiation in muscle fibres of the tadpole tail stresses the importance of coupling histological studies with in vivo cell tracing experiments to better understand the regenerative mechanisms. PMID:22369050

The fish tail motion forms an attached leading edge vortex

PubMed Central

Borazjani, Iman; Daghooghi, Mohsen

2013-01-01

The tail (caudal fin) is one of the most prominent characteristics of fishes, and the analysis of the flow pattern it creates is fundamental to understanding how its motion generates locomotor forces. A mechanism that is known to greatly enhance locomotor forces in insect and bird flight is the leading edge vortex (LEV) reattachment, i.e. a vortex (separation bubble) that stays attached at the leading edge of a wing. However, this mechanism has not been reported in fish-like swimming probably owing to the overemphasis on the trailing wake, and the fact that the flow does not separate along the body of undulating swimmers. We provide, to our knowledge, the first evidence of the vortex reattachment at the leading edge of the fish tail using three-dimensional high-resolution numerical simulations of self-propelled virtual swimmers with different tail shapes. We show that at Strouhal numbers (a measure of lateral velocity to the axial velocity) at which most fish swim in nature (approx. 0.25) an attached LEV is formed, whereas at a higher Strouhal number of approximately 0.6 the LEV does not reattach. We show that the evolution of the LEV drastically alters the pressure distribution on the tail and the force it generates. We also show that the tail's delta shape is not necessary for the LEV reattachment and fish-like kinematics is capable of stabilising the LEV. Our results suggest the need for a paradigm shift in fish-like swimming research to turn the focus from the trailing edge to the leading edge of the tail. PMID:23407826

Innovative Flow Control Concepts for Drag Reduction

NASA Technical Reports Server (NTRS)

Lin, John C.; Whalen, Edward A.; Eppink, Jenna L.; Siochi, Emilie J.; Alexander, Michael G.; Andino, Marlyn Y.

2016-01-01

This paper highlights the technology development of two flow control concepts for aircraft drag reduction. The NASA Environmentally Responsible Aviation (ERA) project worked with Boeing to demonstrate these two concepts on a specially outfitted Boeing 757 ecoDemonstrator during the spring of 2015. The first flow control concept used Active Flow Control (AFC) to delay flow separation on a highly deflected rudder and increase the side force that it generates. This may enable a smaller vertical tail to provide the control authority needed in the event of an engine failure during takeoff and landing, while still operating in a conventional manner over the rest of the flight envelope. Thirty-one sweeping jet AFC actuators were installed and successfully flight-tested on the vertical tail of the 757 ecoDemonstrator. Pilot feedback, flow cone visualization, and analysis of the flight test data confirmed that the AFC is effective, as a smoother flight and enhanced rudder control authority were reported. The second flow control concept is the Insect Accretion Mitigation (IAM) innovation where surfaces were engineered to mitigate insect residue adhesion on a wing's leading edge. This is necessary because something as small as an insect residue on the leading edge of a laminar flow wing design can cause turbulent wedges that interrupt laminar flow, resulting in an increase in drag and fuel use. Several non-stick coatings were developed by NASA and applied to panels that were mounted on the leading edge of the wing of the 757 ecoDemonstrator. The performance of the coated surfaces was measured and validated by the reduction in the number of bug adhesions relative to uncoated control panels flown simultaneously. Both flow control concepts (i.e., sweeping jet actuators and non-stick coatings) for drag reduction were the culmination of several years of development, from wind tunnel tests to flight tests, and produced valuable data for the advancement of modern aircraft designs. The ERA systems analysis studies performed by NASA indicated that AFC-enhanced vertical tail could produce approximately 0.9% drag reduction for a large twin aisle aircraft and IAM coatings could enable approximately 1.2% drag reduction recovery for a potential total drag reduction of approximately 3.3% for a single aisle aircraft with a natural laminar flow (NLF) wing design.

Light-curve analysis of KOI 2700b: the second extrasolar planet with a comet-like tail

NASA Astrophysics Data System (ADS)

Garai, Z.

2018-03-01

Context. The Kepler object KOI 2700b (KIC 8639908b) was discovered recently as the second exoplanet with a comet-like tail. It exhibits a distinctly asymmetric transit profile, likely indicative of the emission of dusty effluents and reminiscent of KIC 12557548b, the first exoplanet with a comet-like tail. Aim. The scientific goal of this work is to verify the disintegrating-planet scenario of KOI 2700b by modeling its light curve and to put constraints on various tail and planet properties, as was done in the case of KIC 12557548b. Methods: We obtained the phase-folded and binned transit light curve of KOI 2700b, which we subsequently iteratively modeled using the radiative-transfer code SHELLSPEC. We modeled the comet-like tail as part of a ring around the parent star and we also included the solid body of the planet in the model. During the modeling we applied selected species and dust particle sizes. Results: We confirmed the disintegrating-planet scenario of KOI 2700b. Furthermore, via modeling, we derived some interesting features of KOI 2700b and its comet-like tail. It turns out that the orbital plane of the planet and its tail are not edge-on, but the orbital inclination angle is from the interval [85.1, 88.6] deg. In comparison with KIC 12557548b, KOI 2700b exhibits a relatively low dust density decreasing in its tail. We also derived the dust density at the beginning of the ring and the highest optical depth through the tail in front of the star, based on a tail-model with a cross-section of 0.05 × 0.05 R⊙ at the beginning and 0.09 × 0.09 R⊙ at its end. Our results show that the dimension of the planet is Rp/Rs ≤ 0.014 (Rp ≤ 0.871 R⊕, or ≤5551 km). We also estimated the mass-loss rate from KOI 2700b, and we obtained Ṁ values from the interval [5.05 × 107, 4.41 × 1015] g s-1. On the other hand, we could not draw any satisfactory conclusions about the typical grain size in the dust tail.

The Influenza Virus M2 Protein Cytoplasmic Tail Interacts with the M1 Protein and Influences Virus Assembly at the Site of Virus Budding ▿

PubMed Central

Chen, Benjamin J.; Leser, George P.; Jackson, David; Lamb, Robert A.

2008-01-01

The cytoplasmic tail of the influenza A virus M2 proton-selective ion channel has been shown to be important for virus replication. Previous analysis of M2 cytoplasmic tail truncation mutants demonstrated a defect in incorporation of viral RNA (vRNA) into virions, suggesting a role for M2 in the recruitment of M1-vRNA complexes. To further characterize the effect of the M2 cytoplasmic tail mutations on virus assembly and budding, we constructed a series of alanine substitution mutants of M2 with mutations in the cytoplasmic tail, from residues 71 to 97. Mutant proteins M2-Mut1 and M2-Mut2, with mutations of residues 71 to 73 and 74 to 76, respectively, appeared to have the greatest effect on virus-like particle and virus budding, showing a defect in M1 incorporation. Mutant viruses containing M2-Mut1 and M2-Mut2 failed to replicate in multistep growth analyses on wild-type (wt) MDCK cells and were able to form plaques only on MDCK cells stably expressing wt M2 protein. Compared to wt M2 protein, M2-Mut1 and M2-Mut2 were unable to efficiently coimmunoprecipitate with M1. Furthermore, statistical analysis of planar sheets of membrane from cells infected by virus containing M2-Mut1 revealed a reduction in M1-hemagglutinin (HA) and M2-HA clustering as well as a severe loss of clustering between M1 and M2. These results suggest an essential, direct interaction between the cytoplasmic tail of M2 and M1 that promotes the recruitment of the internal viral proteins and vRNA to the plasma membrane for efficient virus assembly to occur. PMID:18701586

Structural analysis of the complex between influenza B nucleoprotein and human importin-α.

PubMed

Labaronne, Alice; Milles, Sigrid; Donchet, Amélie; Jensen, Malene Ringkjøbing; Blackledge, Martin; Bourhis, Jean-Marie; Ruigrok, Rob W H; Crépin, Thibaut

2017-12-07

Influenza viruses are negative strand RNA viruses that replicate in the nucleus of the cell. The viral nucleoprotein (NP) is the major component of the viral ribonucleoprotein. In this paper we show that the NP of influenza B has a long N-terminal tail of 70 residues with intrinsic flexibility. This tail contains the Nuclear Location Signal (NLS). The nuclear trafficking of the viral components mobilizes cellular import factors at different stages, making these host-pathogen interactions promising targets for new therapeutics. NP is imported into the nucleus by the importin-α/β pathway, through a direct interaction with importin-α isoforms. Here we provide a combined nuclear magnetic resonance and small-angle X-ray scattering (NMR/SAXS) analysis to describe the dynamics of the interaction between influenza B NP and the human importin-α. The NP of influenza B does not have a single NLS nor a bipartite NLS but our results suggest that the tail harbors several adjacent NLS sequences, located between residues 30 and 71.

Bioadhesive films containing benzocaine: correlation between in vitro permeation and in vivo local anesthetic effect.

PubMed

de Araujo, Daniele Ribeiro; Padula, Cristina; Cereda, Cíntia Maria Saia; Tófoli, Giovana Radomille; Brito, Rui Barbosa; de Paula, Eneida; Nicoli, Sara; Santi, Patrizia

2010-08-01

The aim of this work was to develop anesthetic bioadhesive films containing benzocaine and study their in vitro skin permeation and in vivo performance, in comparison with commercial formulations. Films containing 3% and 5% w/w of benzocaine were prepared and characterized by weight, drug content, thickness and morphology. In vitro permeation assays were performed in vertical diffusion cells using full-thickness pig ear skin as barrier. Intensity and duration of analgesia were evaluated in rats by tail-flick test, and skin histological analysis was carried out. Tail-flick test showed that the duration of benzocaine-induced analgesia was significantly prolonged with the films compared to commercial creams, in agreement with the higher in vitro permeation. Histological analysis of the rat tail skin did not reveal morphological tissue changes nor cell infiltration signs after application of the commercial creams or films. Results from our study indicate that the films developed in this work can be considered as innovative dermal/transdermal therapeutic systems for benzocaine local delivery.

Recent HBT results in Au+Au and p+p collisions from PHENIX

NASA Astrophysics Data System (ADS)

PHENIX Collaboration; Glenn, Andrew; PHENIX Collaboration

2009-11-01

We present Hanbury-Brown Twiss measurements from the PHENIX experiment at RHIC for final results for charged kaon pairs from s=200 GeV Au+Au collisions and preliminary results for charged pion pairs from s=200 GeVp+p collisions. We find that for kaon pairs from Au+Au, each traditional 3D Gaussian radius shows approximately the same linear increase as a function of Npart1/3. An imaging analysis reveals a significant non-Gaussian tail for r≳10 fm. The presence of a tail for kaon pairs demonstrates that similar non-Gaussian tails observed in earlier pion measurements cannot be fully explained by decays of long-lived resonances. The preliminary analysis of pions from s=200 GeV p+p minimum biased collisions show correlations which are well suited to traditional 3D HBT radii extraction via the Bowler-Sinyukov method, and we present R, R, and R as a function of mean transverse pair mass.

Pollution and ecological risk assessment of heavy metals in the soil-plant system and the sediment-water column around a former Pb/Zn-mining area in NE Morocco.

PubMed

El Azhari, Abdellah; Rhoujjati, Ali; El Hachimi, Moulay Laârabi; Ambrosi, Jean-Paul

2017-10-01

This study discussed the environmental fate and ecological hazards of heavy metals in the soil-plant system and sediment-water column around the former Pb-Zn mining Zeïda district, in Northeastern Morocco. Spatial distribution, pollution indices, and cluster analysis were applied for assessing Pb, Zn, As, Cu and Cd pollution levels and risks. The geo-accumulation index (I geo ) was determined using two different geochemical backgrounds: i) the commonly used upper crust values, ii) local geochemical background calculated with exploratory data analysis. The soils in the vicinity of the tailings, as well as the sediments downstream of the latter, displayed much higher metal concentrations, I geo, and potential ecology risk coefficient values than other sites, classifying these sites as highly contaminated and severely hazardous. The concentrations of Pb in contaminated sediment samples also exceeded the PEC limits and are expected to cause harmful effects on sediment-dwelling organisms. Based on the comparison with the toxicity limits, the most contaminated plant samples were found around the tailings piles. The metal concentrations in both raw and filtrated water samples were overall below the drinking water standards in samples upstream and downstream of the mining center, indicating that heavy metals levels in the Moulouya River surface waters were not affected by the tailings spill. Cluster analysis suggest that: i) Pb and Zn in sediments were derived from the abandoned tailings and are mainly stored and transported as particle-bound to the bedload, ii) Pb, Zn, and Cu in the soil-plant system were related to the dispersion of tailings materials while As and Cd originated primarily from natural geological background in both the soil-plant and the water-sediment systems. Copyright © 2017 Elsevier Inc. All rights reserved.

On the derivation of the areal reduction factor of storms

NASA Astrophysics Data System (ADS)

Bacchi, Baldassare; Ranzi, Roberto

A stochastic derivation of the areal reduction factor (ARF) of the storm intensity is presented: it is based on the analysis of the crossing properties of the rainfall process aggregated in space and time. As a working hypothesis, the number of crossings of high rainfall intensity levels is assumed to be Poisson-distributed and a hyperbolic tail of the probability of exceedances of rainfall intensity has been adopted. These hypotheses are supported by the analysis of radar maps during an intense storm event which occurred in Northern Italy. The reduction factor derived from this analysis shows a power-law decay with respect to the area of integration and the duration of the storm. The areal reduction results as a function of the storm duration and of its frequency. A weak, but significant decrease of the areal reduction factor with respect to the return period is shown by the functions derived, and this result is consistent with that of some recent studies on this topic. The results derived, although preliminary, may find useful applications for the definition of the design storm in urban catchments of a size greater than some square kilometres and with duration of some hours.

The high order dispersion analysis based on first-passage-time probability in financial markets

NASA Astrophysics Data System (ADS)

Liu, Chenggong; Shang, Pengjian; Feng, Guochen

2017-04-01

The study of first-passage-time (FPT) event about financial time series has gained broad research recently, which can provide reference for risk management and investment. In this paper, a new measurement-high order dispersion (HOD)-is developed based on FPT probability to explore financial time series. The tick-by-tick data of three Chinese stock markets and three American stock markets are investigated. We classify the financial markets successfully through analyzing the scaling properties of FPT probabilities of six stock markets and employing HOD method to compare the differences of FPT decay curves. It can be concluded that long-range correlation, fat-tailed broad probability density function and its coupling with nonlinearity mainly lead to the multifractality of financial time series by applying HOD method. Furthermore, we take the fluctuation function of multifractal detrended fluctuation analysis (MF-DFA) to distinguish markets and get consistent results with HOD method, whereas the HOD method is capable of fractionizing the stock markets effectively in the same region. We convince that such explorations are relevant for a better understanding of the financial market mechanisms.

Asymptotic densities from the modified Montroll-Weiss equation for coupled CTRWs

NASA Astrophysics Data System (ADS)

Aghion, Erez; Kessler, David A.; Barkai, Eli

2018-01-01

We examine the bi-scaling behavior of Lévy walks with nonlinear coupling, where χ, the particle displacement during each step, is coupled to the duration of the step, τ, by χ τβ. An example of such a process is regular Lévy walks, where β = 1. In recent years such processes were shown to be highly useful for analysis of a class of Langevin dynamics, in particular a system of Sisyphus laser-cooled atoms in an optical lattice, where β = 3/2. We discuss the well-known decoupling approximation used to describe the central part of the particles' position distribution, and use the recently introduced infinite-covariant density approach to study the large fluctuations. Since the density of the step displacements is fat-tailed, the last travel event must be treated with care for the latter. This effect requires a modification of the Montroll-Weiss equation, an equation which has proved important for the analysis of many microscopic models. Contribution to the Topical Issue "Continuous Time Random Walk Still Trendy: Fifty-year History, Current State and Outlook", edited by Ryszard Kutner and Jaume Masoliver.

Rogue waves and entropy consumption

NASA Astrophysics Data System (ADS)

Hadjihoseini, Ali; Lind, Pedro G.; Mori, Nobuhito; Hoffmann, Norbert P.; Peinke, Joachim

2017-11-01

Based on data from the Sea of Japan and the North Sea the occurrence of rogue waves is analyzed by a scale-dependent stochastic approach, which interlinks fluctuations of waves for different spacings. With this approach we are able to determine a stochastic cascade process, which provides information of the general multipoint statistics. Furthermore the evolution of single trajectories in scale, which characterize wave height fluctuations in the surroundings of a chosen location, can be determined. The explicit knowledge of the stochastic process enables to assign entropy values to all wave events. We show that for these entropies the integral fluctuation theorem, a basic law of non-equilibrium thermodynamics, is valid. This implies that positive and negative entropy events must occur. Extreme events like rogue waves are characterized as negative entropy events. The statistics of these entropy fluctuations changes with the wave state, thus for the Sea of Japan the statistics of the entropies has a more pronounced tail for negative entropy values, indicating a higher probability of rogue waves.

Adverse events post smallpox-vaccination: insights from tail scarification infection in mice with Vaccinia virus.

PubMed

Mota, Bruno E F; Gallardo-Romero, Nadia; Trindade, Giliane; Keckler, M Shannon; Karem, Kevin; Carroll, Darin; Campos, Marco A; Vieira, Leda Q; da Fonseca, Flávio G; Ferreira, Paulo C P; Bonjardim, Cláudio A; Damon, Inger K; Kroon, Erna G

2011-04-15

Adverse events upon smallpox vaccination with fully-replicative strains of Vaccinia virus (VACV) comprise an array of clinical manifestations that occur primarily in immunocompromised patients leading to significant host morbidity/mortality. The expansion of immune-suppressed populations and the possible release of Variola virus as a bioterrorist act have given rise to concerns over vaccination complications should more widespread vaccination be reinitiated. Our goal was to evaluate the components of the host immune system that are sufficient to prevent morbidity/mortality in a murine model of tail scarification, which mimics immunological and clinical features of smallpox vaccination in humans. Infection of C57BL/6 wild-type mice led to a strictly localized infection, with complete viral clearance by day 28 p.i. On the other hand, infection of T and B-cell deficient mice (Rag1(-/-)) produced a severe disease, with uncontrolled viral replication at the inoculation site and dissemination to internal organs. Infection of B-cell deficient animals (µMT) produced no mortality. However, viral clearance in µMT animals was delayed compared to WT animals, with detectable viral titers in tail and internal organs late in infection. Treatment of Rag1(-/-) with rabbit hyperimmune anti-vaccinia serum had a subtle effect on the morbidity/mortality of this strain, but it was effective in reduce viral titers in ovaries. Finally, NUDE athymic mice showed a similar outcome of infection as Rag1(-/-), and passive transfer of WT T cells to Rag1(-/-) animals proved fully effective in preventing morbidity/mortality. These results strongly suggest that both T and B cells are important in the immune response to primary VACV infection in mice, and that T-cells are required to control the infection at the inoculation site and providing help for B-cells to produce antibodies, which help to prevent viral dissemination. These insights might prove helpful to better identify individuals with higher risk of complications after infection with poxvirus.

Response of Jupiter's Aurora to Plasma Mass Loading Rate Monitored by the Hisaki Satellite During Io's Volcanic Event

NASA Astrophysics Data System (ADS)

Kimura, T.; Yoshioka, K.; Tsuchiya, F.; Hiraki, Y.; Tao, C.; Murakami, G.; Yamazaki, A.; Fujimoto, M.; Badman, S. V.; Delamere, P. A.; Bagenal, F.

2016-12-01

Plasma production and transfer processes in the planetary and stellar magnetospheres are essential for understanding the space environments around the celestial bodies. It is hypothesized that the mass of plasma loaded from Io's volcano to Jupiter's rotating magnetosphere is recurrently ejected as blobs from the distant tail region of the magnetosphere. The plasma ejections are possibly triggered by the magnetic reconnections, which are followed by the particle energization, bursty planetward plasma flow, and resultant auroral emissions. They are referred to as the 'energetic events'. However, there has been no evidence that the plasma mass loading actually causes the energetic events because of lack of the simultaneous observation of them. This study presents that the recurrent transient auroras, which are possibly representative for the energetic events, are closely associated with the mass loading. Continuous monitoring of the aurora and Io plasma torus indicates onset of the recurrent auroras when accumulation of the loaded plasma mass reaches the canonical total mass of the magnetosphere. This onset condition implies that the fully filled magnetosphere overflows the plasma mass accompanying the energetic events.

A new unified approach to analyze wing-body-tail configurations with control surfaces in steady, oscillatory and fully unsteady, subsonic and supersonic flows

NASA Technical Reports Server (NTRS)

Tseng, K.; Morino, L.

1975-01-01

A general formulation for the analysis of steady and unsteady, subsonic and supersonic potential aerodynamics for arbitrary complex geometries is presented. The theoretical formulation, the numerical procedure, and numerical results are included. In particular, generalized forces for fully unsteady (complex frequency) aerodynamics for an AGARD coplanar wing-tail interfering configuration in both subsonic and supersonic flows are considered.

Solar-wind velocity measurements from near-Sun comets C/2011 W3 (Lovejoy), C/2011 L4 (Pan-STARRS), and C/2012 S1 (ISON)

NASA Astrophysics Data System (ADS)

Ramanjooloo, Y.; Jones, G. H.; Coates, A.; Owens, M. J.; Battams, K.

2014-07-01

Since the mid-20th century, comets' plasma (type I) tails have been studied as natural probes of the solar wind [1]. Comets have induced magnetotails, formed through the draping of the heliospheric magnetic field by the velocity shear in the mass-loaded solar wind. These can be easily observed remotely as the comets' plasma tails, which generally point away from the Sun. Local solar-wind conditions directly influence the morphology and dynamics of a comet's plasma tail. During ideal observing geometries, the orientation and structure of the plasma tail can reveal large-scale and small-scale variations in the local solar-wind structure. These variations can be manifested as tail condensations, kinks, and disconnection events. Over 50 % of observed catalogued comets are sungrazing comets [2], fragments of three different parent comets. Since 2011, two bright new comets, C/2011 W3 [3] (from hereon comet Lovejoy) and C/2012 S1 [4] (hereon comet ISON) have experienced extreme solar-wind conditions and insolation of their nucleus during their perihelion passages, approaching to within 8.3×10^5 km (1.19 solar radii) and 1.9×10^6 km (2.79 solar radii) of the solar centre. They each displayed a prominent plasma tail, proving to be exceptions amongst the observed group of sungrazing comets. These bright sungrazers provide unprecedented access to study the solar wind in the heretofore unprobed innermost region of the solar corona. The closest spacecraft in-situ sampling of the solar wind by the Helios probes reached 0.29 au. For this study, we define a sungrazing comet as one with its perihelion within the solar Roche limit (3.70 solar radii). We also extend this study to include C/2011 L4 [5] (comet Pan-STARRS), a comet with a much further perihelion distance of 0.302 au. The technique employed in this study was first established by analysing geocentric amateur observations of comets C/2001 Q4 (NEAT) and C/2004 Q2 (Machholz) [7]. These amateur images, obtained with modern equipment and sensors, rival and sometimes arguably exceed the quality of professional images obtained only 2--3 decades ago. Multiple solar-wind velocity estimates were derived from each image and the results compared to observed and modelled near-Earth solar-wind data. Our unique analysis technique [Ramanjooloo et al., in preparation] allows us to determine the latitudinal variations of the solar wind, heliospheric current-sheet sector boundaries and the boundaries of transient features as a comet with an observable plasma tail probes the inner heliosphere. We present solar-wind velocity measurements derived from multiple observing locations of comets Lovejoy from the 14th -- 19th December 2011, comet Pan-STARRS during 11th -- 16th March 2013 and comet ISON from 12th -- 29th November 2013. Observations were gathered from multiple resources, from the SECCHI heliospheric imagers aboard STEREO A and B [8], the LASCO coronagraphs aboard SOHO [9], as well as ground-based amateur and professional observations coordinated by the CIOC. Overlapping observation sessions from the three spacecraft and ground-based efforts provided the perfect opportunity to use these comets as a diagnostic tool to understand solar-wind variability close to the Sun. We plan to compare our observations to results of suitable simulations [10] of plasma conditions in the corona and inner heliosphere during each of the comets' perihelion passage. The correlation of the solar-wind velocity distribution from different observing locations can provide clues towards the morphology and orientation of the plasma tail. We also attempt to determine the difficult-to-determine non-radial components of the measured solar-wind velocities.

Correlation between length and tilt of lipid tails

NASA Astrophysics Data System (ADS)

Kopelevich, Dmitry I.; Nagle, John F.

2015-10-01

It is becoming recognized from simulations, and to a lesser extent from experiment, that the classical Helfrich-Canham membrane continuum mechanics model can be fruitfully enriched by the inclusion of molecular tilt, even in the fluid, chain disordered, biologically relevant phase of lipid bilayers. Enriched continuum theories then add a tilt modulus κθ to accompany the well recognized bending modulus κ. Different enrichment theories largely agree for many properties, but it has been noticed that there is considerable disagreement in one prediction; one theory postulates that the average length of the hydrocarbon chain tails increases strongly with increasing tilt and another predicts no increase. Our analysis of an all-atom simulation favors the latter theory, but it also shows that the overall tail length decreases slightly with increasing tilt. We show that this deviation from continuum theory can be reconciled by consideration of the average shape of the tails, which is a descriptor not obviously includable in continuum theory.

A study of design approach of spreading schemes for viral marketing based on human dynamics

NASA Astrophysics Data System (ADS)

Yang, Jianmei; Zhuang, Dong; Xie, Weicong; Chen, Guangrong

2013-12-01

Before launching a real viral marketing campaign, it is needed to design a spreading scheme by simulations. Based on a categorization of spreading patterns in real world and models, we point out that the existing research (especially Yang et al. (2010) Ref. [16]) implicitly assume that if a user decides to post a received message (is activated), he/she will take the reposting action promptly (Prompt Action After Activation, or PAAA). After a careful analysis on a real dataset however, it is found that the observed time differences between action and activation exhibit a heavy-tailed distribution. A simulation model for heavy-tailed pattern is then proposed and performed. Similarities and differences of spreading processes between the heavy-tailed and PAAA patterns are analyzed. Consequently, a more practical design approach of spreading scheme for viral marketing on QQ platform is proposed. The design approach can be extended and applied to the contexts of non-heavy-tailed pattern, and viral marketing on other instant messaging platforms.

Effect of acute ethanol administration on zebrafish tail-beat motion.

PubMed

Bartolini, Tiziana; Mwaffo, Violet; Butail, Sachit; Porfiri, Maurizio

2015-11-01

Zebrafish is becoming a species of choice in neurobiological and behavioral studies of alcohol-related disorders. In these efforts, the activity of adult zebrafish is typically quantified using indirect activity measures that are either scored manually or identified automatically from the fish trajectory. The analysis of such activity measures has produced important insight into the effect of acute ethanol exposure on individual and social behavior of this vertebrate species. Here, we leverage a recently developed tracking algorithm that reconstructs fish body shape to investigate the effect of acute ethanol administration on zebrafish tail-beat motion in terms of amplitude and frequency. Our results demonstrate a significant effect of ethanol on the tail-beat amplitude as well as the tail-beat frequency, both of which were found to robustly decrease for high ethanol concentrations. Such a direct measurement of zebrafish motor functions is in agreement with evidence based on indirect activity measures, offering a complementary perspective in behavioral screening. Copyright © 2015 Elsevier Inc. All rights reserved.

Development and flight evaluation of an augmented stability active controls concept with a small tail

NASA Technical Reports Server (NTRS)

1980-01-01

Parasite drag reduction evaluation is composed of wind tunnel tests with a standard L-1011 tail and two reduced area tail configurations. Trim drag reduction is evaluated by rebalancing the airplane for relaxed static stability. This is accomplished by pumping water to tanks in the forward and aft of the airplane to acheive desired center of gravity location. Also, the L-1011 is modified to incorporate term and advanced augmented systems. By using advanced wings and aircraft relaxed static stability significant fuel savings can be realized. An airplane's dynamic stability becomes more sensitive for decreased tail size, relaxed static stability, and advanced wing configurations. Active control pitch augmentation will be used to acheive the required handling qualities. Flight tests will be performed to evaluate the pitch augmentation systems. The effect of elevator downrig on stabilizer/elevator hinge moments will be measured. For control system analysis, the normal acceleration feedback and pitch rate feedback are analyzed.

First stable isotope analysis of Asiatic wild ass tail hair from the Mongolian Gobi

PubMed Central

Horacek, Micha; Sturm, Martina Burnik; Kaczensky, Petra

2015-01-01

Stable isotope analysis has become a powerful tool to study feeding ecology, water use or movement pattern in contemporary, historic and ancient species. Certain hair and teeth grow continuously, and when sampled longitudinally can provide temporally explicit information on dietary regime and movement pattern. In an initial trial, we analysed a tail sample of an Asiatic wild ass (Equus hemionus) from the Mongolian Gobi. We found seasonal variations in H, C and N isotope patterns, likely being the result of temporal variations in available feeds, water supply and possibly physiological status. Thus stable isotope analysis shows promise to study the comparative ecology of the three autochthonous equid species in the Mongolian Gobi. PMID:26339116

Wildlife contact rates at artificial feeding sites in Texas.

PubMed

Campbell, Tyler A; Long, David B; Shriner, Susan A

2013-06-01

Given the popularity of feeding white-tailed deer (Odocoileus virginianus) in Texas and the increasing amount of corn that is distributed, more information is needed on the impacts of this activity on non-target wildlife. Our objectives were to report visitation, intra- and interspecific contact, and contact rates of wildlife at artificial feeding sites in Texas. Our study was conducted at three sites in Kleberg and Nueces counties, Texas. We trapped animals from February to April and August to September, 2009 and marked animals with passive integrated transponder (PIT) tags. At each site and season, we placed one feeder system containing a PIT tag reader within 600 m of trap locations. Readers detected PIT tags from a distance of 25 cm. We determined a contact event to occur when two different PIT tags were detected by feeder systems within 5 s. We recorded 62,719 passes by raccoons (Procyon lotor), 103,512 passes by collared peccaries (Pecari tajacu), 2,923 passes by feral swine (Sus scrofa), 1,336 passes by fox squirrels (Sciurus niger), and no passes by opossums (Didelphis virginiana) at feeder systems. For site-season combinations in which contact events occurred, we found intraspecific contact rates (contacts per day) for raccoons, collared peccaries, and feral swine to be 0.81-124.77, 0.69-38.08, and 0.0-0.66, respectively. Throughout our study we distributed ~2,625 kg of whole kernel corn, which resulted in 6,351 contact events between marked wildlife (2.4 contacts per kg of corn). If 136 million kg of corn is distributed in Texas annually, we would expect >5.2 billion unnatural contact events between wildlife would result from this activity each year in Texas. Consequently, we do not believe that it is wise for natural resource managers to maintain artificial feeding sites for white-tailed deer or other wildlife due to pathogen transmission risks.

Wildlife Contact Rates at Artificial Feeding Sites in Texas

NASA Astrophysics Data System (ADS)

Campbell, Tyler A.; Long, David B.; Shriner, Susan A.

2013-06-01

Given the popularity of feeding white-tailed deer ( Odocoileus virginianus) in Texas and the increasing amount of corn that is distributed, more information is needed on the impacts of this activity on non-target wildlife. Our objectives were to report visitation, intra- and interspecific contact, and contact rates of wildlife at artificial feeding sites in Texas. Our study was conducted at three sites in Kleberg and Nueces counties, Texas. We trapped animals from February to April and August to September, 2009 and marked animals with passive integrated transponder (PIT) tags. At each site and season, we placed one feeder system containing a PIT tag reader within 600 m of trap locations. Readers detected PIT tags from a distance of 25 cm. We determined a contact event to occur when two different PIT tags were detected by feeder systems within 5 s. We recorded 62,719 passes by raccoons ( Procyon lotor), 103,512 passes by collared peccaries ( Pecari tajacu), 2,923 passes by feral swine ( Sus scrofa), 1,336 passes by fox squirrels ( Sciurus niger), and no passes by opossums ( Didelphis virginiana) at feeder systems. For site-season combinations in which contact events occurred, we found intraspecific contact rates (contacts per day) for raccoons, collared peccaries, and feral swine to be 0.81-124.77, 0.69-38.08, and 0.0-0.66, respectively. Throughout our study we distributed ~2,625 kg of whole kernel corn, which resulted in 6,351 contact events between marked wildlife (2.4 contacts per kg of corn). If 136 million kg of corn is distributed in Texas annually, we would expect >5.2 billion unnatural contact events between wildlife would result from this activity each year in Texas. Consequently, we do not believe that it is wise for natural resource managers to maintain artificial feeding sites for white-tailed deer or other wildlife due to pathogen transmission risks.

Why are most EU pigs tail docked? Economic and ethical analysis of four pig housing and management scenarios in the light of EU legislation and animal welfare outcomes.

PubMed

D'Eath, R B; Niemi, J K; Vosough Ahmadi, B; Rutherford, K M D; Ison, S H; Turner, S P; Anker, H T; Jensen, T; Busch, M E; Jensen, K K; Lawrence, A B; Sandøe, P

2016-04-01

To limit tail biting incidence, most pig producers in Europe tail dock their piglets. This is despite EU Council Directive 2008/120/EC banning routine tail docking and allowing it only as a last resort. The paper aims to understand what it takes to fulfil the intentions of the Directive by examining economic results of four management and housing scenarios, and by discussing their consequences for animal welfare in the light of legal and ethical considerations. The four scenarios compared are: 'Standard Docked', a conventional housing scenario with tail docking meeting the recommendations for Danish production (0.7 m2/pig); 'Standard Undocked', which is the same as 'Standard Docked' but with no tail docking, 'Efficient Undocked' and 'Enhanced Undocked', which have increased solid floor area (0.9 and 1.0 m2/pig, respectively) provision of loose manipulable materials (100 and 200 g/straw per pig per day) and no tail docking. A decision tree model based on data from Danish and Finnish pig production suggests that Standard Docked provides the highest economic gross margin with the least tail biting. Given our assumptions, Enhanced Undocked is the least economic, although Efficient Undocked is better economically and both result in a lower incidence of tail biting than Standard Undocked but higher than Standard Docked. For a pig, being bitten is worse for welfare (repeated pain, risk of infections) than being docked, but to compare welfare consequences at a farm level means considering the number of affected pigs. Because of the high levels of biting in Standard Undocked, it has on average inferior welfare to Standard Docked, whereas the comparison of Standard Docked and Enhanced (or Efficient) Undocked is more difficult. In Enhanced (or Efficient) Undocked, more pigs than in Standard Docked suffer from being tail bitten, whereas all the pigs avoid the acute pain of docking endured by the pigs in Standard Docked. We illustrate and discuss this ethical balance using numbers derived from the above-mentioned data. We discuss our results in the light of the EU Directive and its adoption and enforcement by Member States. Widespread use of tail docking seems to be accepted, mainly because the alternative steps that producers are required to take before resorting to it are not specified in detail. By tail docking, producers are acting in their own best interests. We suggest that for the practice of tail docking to be terminated in a way that benefits animal welfare, changes in the way pigs are housed and managed may first be required.

Ecological differences in three autochthonous equid species in Mongolian Gobi inferred from stable isotopes in tail hair

NASA Astrophysics Data System (ADS)

Burnik Šturm, Martina; Voigt, Christian C.; Oyunsaikhan, Ganbaatar; Kaczensky, Petra

2014-05-01

In the Dzungarian Gobi of Mongolia three equid species, Asiatic wild ass (Equus hemionus), domestic horse (Equus caballus), and re-introduced Przewalski's horse (Equus ferus przewalskii) share the same habitat and thus provide a unique opportunity for comparative ecological studies. In our project we use the stable isotope analysis of tail hair as a tool to study feeding ecology, water use and movement pattern of the three extant sympatric equid species to reveal species specific differences and thus strengthen our understanding of the ecological adaptations of the three species to the harsh environment of the Gobi desert. Since tail hair grow continuously and is isotopically inert after formation, when sampled and analysed longitudinally, provides temporary explicit information on dietary regime and movement pattern. We use the carbon isotopes in the tail hair to determine the quantitative dependence of each animal on isotopically distinct C3 (grasses) and C4 (multitude of annuals and perennials) diet. Nitrogen isotopes reflect the isotopic composition of the diet and hydrogen isotopes reflect the isotopic composition of the water that animals utilize, while both elements have been reported to also give information on the physical status of the animal. Combined isotope data will be used to describe the movement patterns and habitat use of the three equid species. We will present the methodology and first preliminary results of carbon and nitrogen isotope analysis of potential forage plants of the study area and of the tail hair analysis. Among the analysed plants, collected in the pilot sampling campaign in 2012 (n = 192), we identified 14 C3 and two C4species and found no general trend that could explain the effect of altitude on carbon isotopic composition in C3 plants and no correlation between carbon isotopic composition and longitude or latitude. We performed additional, more detailed plant sampling in 2013. The first results obtained from the tail hair analysis indicate differences in feeding preferences between extant wild asses (n = 6) and Przewalski's (n = 6) and domestic horses (n = 6). While wild asses switch regularly between periods with predominantly feeding on C3 diet with low incorporation of C4 diet (wet season) and periods with high incorporation of C4 (dry season) diet, Przewalski's and domestic horses predominantly feed on C3 plant diet but seem to also include C4plants in their diet during extreme conditions (i.e. extremely harsh winters).

Scaling characteristics of one-dimensional fractional diffusion processes in the presence of power-law distributed random noise

NASA Astrophysics Data System (ADS)

Nezhadhaghighi, Mohsen Ghasemi

2017-08-01

Here, we present results of numerical simulations and the scaling characteristics of one-dimensional random fluctuations with heavy-tailed probability distribution functions. Assuming that the distribution function of the random fluctuations obeys Lévy statistics with a power-law scaling exponent, we investigate the fractional diffusion equation in the presence of μ -stable Lévy noise. We study the scaling properties of the global width and two-point correlation functions and then compare the analytical and numerical results for the growth exponent β and the roughness exponent α . We also investigate the fractional Fokker-Planck equation for heavy-tailed random fluctuations. We show that the fractional diffusion processes in the presence of μ -stable Lévy noise display special scaling properties in the probability distribution function (PDF). Finally, we numerically study the scaling properties of the heavy-tailed random fluctuations by using the diffusion entropy analysis. This method is based on the evaluation of the Shannon entropy of the PDF generated by the random fluctuations, rather than on the measurement of the global width of the process. We apply the diffusion entropy analysis to extract the growth exponent β and to confirm the validity of our numerical analysis.

Scaling characteristics of one-dimensional fractional diffusion processes in the presence of power-law distributed random noise.

PubMed

Nezhadhaghighi, Mohsen Ghasemi

2017-08-01

Here, we present results of numerical simulations and the scaling characteristics of one-dimensional random fluctuations with heavy-tailed probability distribution functions. Assuming that the distribution function of the random fluctuations obeys Lévy statistics with a power-law scaling exponent, we investigate the fractional diffusion equation in the presence of μ-stable Lévy noise. We study the scaling properties of the global width and two-point correlation functions and then compare the analytical and numerical results for the growth exponent β and the roughness exponent α. We also investigate the fractional Fokker-Planck equation for heavy-tailed random fluctuations. We show that the fractional diffusion processes in the presence of μ-stable Lévy noise display special scaling properties in the probability distribution function (PDF). Finally, we numerically study the scaling properties of the heavy-tailed random fluctuations by using the diffusion entropy analysis. This method is based on the evaluation of the Shannon entropy of the PDF generated by the random fluctuations, rather than on the measurement of the global width of the process. We apply the diffusion entropy analysis to extract the growth exponent β and to confirm the validity of our numerical analysis.

Non-Gaussian statistics of extreme events in stimulated Raman scattering: The role of coherent memory and source noise

NASA Astrophysics Data System (ADS)

Monfared, Yashar E.; Ponomarenko, Sergey A.

2017-10-01

We explore theoretically and numerically extreme event excitation in stimulated Raman scattering in gases. We consider gas-filled hollow-core photonic crystal fibers as a particular system realization. We show that moderate amplitude pump fluctuations obeying Gaussian statistics lead to the emergence of heavy-tailed non-Gaussian statistics as coherent seed Stokes pulses are amplified on propagation along the fiber. We reveal the crucial role that coherent memory effects play in causing non-Gaussian statistics of the system. We discover that extreme events can occur even at the initial stage of stimulated Raman scattering when one can neglect energy depletion of an intense, strongly fluctuating Gaussian pump source. Our analytical results in the undepleted pump approximation explicitly illustrate power-law probability density generation as the input pump noise is transferred to the output Stokes pulses.

Changes in the frequency of extreme air pollution events over the Eastern United States and Europe

NASA Astrophysics Data System (ADS)

Rieder, H. E.; Fiore, A. M.; Fang, Y.; Staehelin, J.

2011-12-01

Over the past few decades, thresholds for national air quality standards, intended to protect public health and welfare, have been lowered repeatedly. At the same time observations, over Europe and the Eastern U.S., demonstrate that extreme air pollution events (high O3 and PM2.5) are typically associated with stagnation events. Recent work showed that in a changing climate high air pollution events are likely to increase in frequency and duration. Within this work we examine meteorological and surface ozone observations from CASTNet over the U.S. and EMEP over Europe and "idealized" simulations with the GFDL AM3 chemistry-climate model, which isolate the role of climate change on air quality. Specifically, we examine an "idealized 1990s" simulation, forced with 20-year mean monthly climatologies for sea surface temperatures and sea ice from observations for 1981-2000, and an "idealized 2090s" simulation forced by the observed climatologies plus the multi-model mean changes in sea surface temperature and sea ice simulated by 19 IPCC AR-4 models under the A1B scenario for 2081-2100. With innovative statistical tools (empirical orthogonal functions (EOFs) and statistics of extremes (EVT)), we analyze the frequency distribution of past, present and future extreme air pollution events over the Eastern United States and Europe. The upper tail of observed values at individual stations (e.g., within the CASTNet), i.e., the extremes (maximum daily 8-hour average (MDA8) O3>60ppb) are poorly described by a Gaussian distribution. However, further analysis showed that applying Peak-Over-Threshold-models, better capture the extremes and allows us to estimate return levels of pollution events above certain threshold values of interest. We next apply EOF analysis to identify regions that vary coherently within the ground-based monitoring networks. Over the United States, the first EOF obtained from the model in both the 1990s and 2090s idealized simulations identifies the Northeast as a region that varies coherently. Correlation analysis reveals that this EOF pattern is most strongly expressed in association with high surface temperature and high surface pressure conditions, consistent with previous work showing that observed O3 episodes over this area reflect the combined impacts of stagnation and increased chemical production. Next steps include the extension of this analysis applying EVT tools to the principal component time series associated with this EOF. The combination of EOF and EVT tools applied to the GFDL AM3 1990s vs. 2090s idealized simulations will enable us to quantify changes in the return levels of air pollution extremes. Therefore the combination of observational data and numerical and statistical models should allow us to identify key driving forces between high air pollution events and to estimate changes in the frequency of such events under different climate change scenarios.

Fractographic Examination of the Vertical Stabilizer and Rudder from American Airlines Flight 587

NASA Technical Reports Server (NTRS)

Fox, Matthew R.; Schultheisz, Carl R.; Reeder, James R.

2005-01-01

The first major structural component failure of a composite part on a commercial airplane occurred during the crash of American Airlines Flight 587. The fractured composite lugs that attached the vertical stabilizer to the aircraft tail and the fractured composite honeycomb rudder were examined as part of the National Transportation Safety Board investigation of the accident. In this paper the composite fractures are described and the resulting clues to the failure events are discussed.

The requirements for herpes simplex virus type 1 cell-cell spread via nectin-1 parallel those for virus entry.

PubMed

Even, Deborah L; Henley, Allison M; Geraghty, Robert J

2006-08-01

Herpes simplex virus type 1 (HSV-1) spreads from an infected cell to an uninfected cell by virus entry, virus-induced cell fusion, and cell-cell spread. The three forms of virus spread require the viral proteins gB, gD, and gH-gL, as well as a cellular gD receptor. The mutual requirement for the fusion glycoproteins and gD receptor suggests that virus entry, cell fusion, and cell-cell spread occur by a similar mechanism. The goals of this study were to examine the role of the nectin-1alpha transmembrane domain and cytoplasmic tail in cell-cell spread and to obtain a better understanding of the receptor-dependent events occurring at the plasma membrane during cell-cell spread. We determined that an intact nectin-1alpha V-like domain was required for cell-cell spread, while a membrane-spanning domain and cytoplasmic tail were not. Chimeric forms of nectin-1 that were non-functional for virus entry did not mediate cell-cell spread regardless of whether they could mediate cell fusion. Also, cell-cell spread of syncytial isolates was dependent upon nectin-1alpha expression and occurred through a nectin-1-dependent mechanism. Taken together, our results indicate that nectin-1-dependent events occurring at the plasma membrane during cell-cell spread were equivalent to those for virus entry.

Quantitative Analysis of Filament Branch Orientation in Listeria Actin Comet Tails.

PubMed

Jasnin, Marion; Crevenna, Alvaro H

2016-02-23

Several bacterial and viral pathogens hijack the host actin cytoskeleton machinery to facilitate spread and infection. In particular, Listeria uses Arp2/3-mediated actin filament nucleation at the bacterial surface to generate a branched network that will help propel the bacteria. However, the mechanism of force generation remains elusive due to the lack of high-resolution three-dimensional structural data on the spatial organization of the actin mother and daughter (i.e., branch) filaments within this network. Here, we have explored the three-dimensional structure of Listeria actin tails in Xenopus laevis egg extracts using cryo-electron tomography. We found that the architecture of Listeria actin tails is shared between those formed in cells and in cell extracts. Both contained nanoscopic bundles along the plane of the substrate, where the bacterium lies, and upright filaments (also called Z filaments), both oriented tangentially to the bacterial cell wall. Here, we were able to identify actin filament intersections, which likely correspond to branches, within the tails. A quantitative analysis of putative Arp2/3-mediated branches in the actin network showed that mother filaments lie on the plane of the substrate, whereas daughter filaments have random deviations out of this plane. Moreover, the analysis revealed that branches are randomly oriented with respect to the bacterial surface. Therefore, the actin filament network does not push directly toward the surface but rather accumulates, building up stress around the Listeria surface. Our results favor a mechanism of force generation for Listeria movement where the stress is released into propulsive motion. Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

PROBABILISTIC RISK ANALYSIS OF RADIOACTIVE WASTE DISPOSALS - a case study

NASA Astrophysics Data System (ADS)

Trinchero, P.; Delos, A.; Tartakovsky, D. M.; Fernandez-Garcia, D.; Bolster, D.; Dentz, M.; Sanchez-Vila, X.; Molinero, J.

2009-12-01

The storage of contaminant material in superficial or sub-superficial repositories, such as tailing piles for mine waste or disposal sites for low and intermediate nuclear waste, poses a potential threat for the surrounding biosphere. The minimization of these risks can be achieved by supporting decision-makers with quantitative tools capable to incorporate all source of uncertainty within a rigorous probabilistic framework. A case study is presented where we assess the risks associated to the superficial storage of hazardous waste close to a populated area. The intrinsic complexity of the problem, involving many events with different spatial and time scales and many uncertainty parameters is overcome by using a formal PRA (probabilistic risk assessment) procedure that allows decomposing the system into a number of key events. Hence, the failure of the system is directly linked to the potential contamination of one of the three main receptors: the underlying karst aquifer, a superficial stream that flows near the storage piles and a protection area surrounding a number of wells used for water supply. The minimal cut sets leading to the failure of the system are obtained by defining a fault-tree that incorporates different events including the failure of the engineered system (e.g. cover of the piles) and the failure of the geological barrier (e.g. clay layer that separates the bottom of the pile from the karst formation). Finally the probability of failure is quantitatively assessed combining individual independent or conditional probabilities that are computed numerically or borrowed from reliability database.

Magnetospheric Multiscale observations of Poynting flux associated with magnetic reconnection in the Earth's magnetotail from 10 to 25 RE

NASA Astrophysics Data System (ADS)

Stawarz, J. E.; Eastwood, J. P.; Ergun, R.; Shay, M. A.; Phan, T.; Nakamura, R.; Varsani, A.; Burch, J. L.; Fuselier, S. A.; Gershman, D. J.; Giles, B. L.; Goodrich, K.; Khotyaintsev, Y. V.; Lindqvist, P. A.; Russell, C. T.; Strangeway, R. J.; Torbert, R. B.

2017-12-01

Magnetic reconnection plays an important role in energy conversion and transport in space plasmas. In the Earth's magnetotail, fast Earthward, as well as tailward, flows known as bursty bulk flows (BBFs) are thought to be jets caused by reconnection. Alfvénic Poynting flux associated with these reconnection events is thought to transport energy that results in auroral activity. It has been proposed that the reconnection event itself can generate a kinetic Alfvén wave signature along the separatrix. Furthermore, the process of BBF braking as the reconnection jet impinges on the dipolar near-Earth magnetic field can excite turbulence and wave activity, which can propagate along the field to the auroral region. Recently, Poynting flux at 10 RE in the tail near the plasma sheet boundary has been examined using observations from the Magnetospheric Multiscale (MMS) mission. The 3D structure of the fluctuations was investigated and it was demonstrated that they are consistent with kinetic Alfvén waves with non-plane-wave structure. However, at this location in the tail, the observed Poynting flux may be linked to either the reconnection separatrix or waves excited by BBF braking. Some evidence for two classes of Poynting flux events that may be consistent with these two source mechanisms has been found at 10 RE distances. In this presentation, these results will be discussed and compared with new MMS observations nearer to the reconnection site at 25 RE. At this location, BBF braking is likely not contributing to the Poynting flux, which helps to further elucidate the importance of the various sources of reconnection related Alfvénic Poynting flux in the magnetotail.

Detection and characterization of lightning-based sources using continuous wavelet transform: application to audio-magnetotellurics

NASA Astrophysics Data System (ADS)

Larnier, H.; Sailhac, P.; Chambodut, A.

2018-01-01

Atmospheric electromagnetic waves created by global lightning activity contain information about electrical processes of the inner and the outer Earth. Large signal-to-noise ratio events are particularly interesting because they convey information about electromagnetic properties along their path. We introduce a new methodology to automatically detect and characterize lightning-based waves using a time-frequency decomposition obtained through the application of continuous wavelet transform. We focus specifically on three types of sources, namely, atmospherics, slow tails and whistlers, that cover the frequency range 10 Hz to 10 kHz. Each wave has distinguishable characteristics in the time-frequency domain due to source shape and dispersion processes. Our methodology allows automatic detection of each type of event in the time-frequency decomposition thanks to their specific signature. Horizontal polarization attributes are also recovered in the time-frequency domain. This procedure is first applied to synthetic extremely low frequency time-series with different signal-to-noise ratios to test for robustness. We then apply it on real data: three stations of audio-magnetotelluric data acquired in Guadeloupe, oversea French territories. Most of analysed atmospherics and slow tails display linear polarization, whereas analysed whistlers are elliptically polarized. The diversity of lightning activity is finally analysed in an audio-magnetotelluric data processing framework, as used in subsurface prospecting, through estimation of the impedance response functions. We show that audio-magnetotelluric processing results depend mainly on the frequency content of electromagnetic waves observed in processed time-series, with an emphasis on the difference between morning and afternoon acquisition. Our new methodology based on the time-frequency signature of lightning-induced electromagnetic waves allows automatic detection and characterization of events in audio-magnetotelluric time-series, providing the means to assess quality of response functions obtained through processing.

Substorms, poleward boundary activations and geosynchronous particle injections during sawtooth events

NASA Astrophysics Data System (ADS)

Henderson, M. G.

2006-12-01

During sawtooth events, the auroral distribution is typically comprised of an active and dynamic double oval configuration. In association with each tooth, the double oval evolves in a repeatable manner in which a wide double-oval configuration gradually thins down in association with an expansion of the polar cap and stretching of the tail field lines. This is followed by a localized substorm-like brightening of the auroral distribution in the dusk to midnight sector on the lower branch of the double oval which subsequently expands rapidly poleward and azimuthally. A new expanded double oval configuration emerges from this expansion phase activity and the cycle repeats itself for the duration of the sawtooth event. This behavior is highly consistent with the Akasofu picture of substorm onset occurring deep within the closed field-line region on the equator-most arc. Due to the large separation between the poleward boundary and the onset region during these types of substorms, the interaction between the onset region and poleward boundary intensifications, auroral streamers, inclined arcs, torches and omega bands are more easily determined. Here, we show that: (1) Sawtooth injections can be produced by the copious production of auroral streamers, without a substorm onset; (2) Auroral streamers typically evolve into torches and omega bands rather than leading to onsets; (3) Equatorward-moving "inclined arcs" can feed into the onset region. The observations might be explained by the scale-size-dependent behavior of earthward-moving depleted flux tubes in the tail. In this hypothesis, streamers can penetrate rapidly toward the earth (via interchange) and mitigate the pressure crisis in the near-earth region, while the slower-moving inclined arcs map to large-scale depleted flux tubes that do not efficiently penetrate earthward and hence do not alleviate the pressure crisis in the pre-midnight sector.

Claustrum of the short-tailed fruit bat, Carollia perspicillata: Alignment of cellular orientation and functional connectivity.

PubMed

Orman, Rena; Kollmar, Richard; Stewart, Mark

2017-04-15

The claustrum is a gray-matter structure that underlies neocortex and reciprocates connections with cortical and subcortical targets. In lower mammals, the claustrum is directly adjacent to neocortex, making the definition of claustral boundaries challenging. Latexin, an endogenous inhibitor of metallocarboxypeptidases, localizes to claustral cells, enabling a clear delineation of claustrum. Given its proportionately large claustrum, we hypothesized that the short-tailed fruit bat, Carollia perspicillata, can be a useful model for claustral structure-function relations. We used latexin immunohistochemistry to identify claustral boundaries and intrinsic structure and multielectrode recordings from brain slices to explore intrinsic excitatory connectivity of the claustrum. Carollia's claustrum contains cells whose intrinsic connectivity and alignment permit the generation of spontaneous, synchronous population events and mirror their pattern of spread in disinhibited brain slices over millimeters. Carollia shows cellular alignment and spontaneous population-activity spread along both horizontal and dorsoventral axes. Carollia claustrum possesses intrinsic excitatory connectivity sufficient to: 1) generate single, spontaneous, synchronized burst discharges, 2) support activity spread along axes where claustral cells are aligned, and 3), because of multiple axes for cell alignment, support activity spread along both rostrocaudal and dorsoventral axes. The smaller event sizes in bat claustrum compared with rat claustrum are consistent with events occurring in population subsets rather than the full claustral cell population. The overall size of claustrum, its pronounced vascularity, and its more complex intrinsic connectivity than rat suggest that the bat is an animal model for claustral structure and function that will permit unique access to claustrum's processing capabilities. J. Comp. Neurol. 525:1459-1474, 2017. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

A mathematical model for the occurrence of historical events

NASA Astrophysics Data System (ADS)

Ohnishi, Teruaki

2017-12-01

A mathematical model was proposed for the frequency distribution of historical inter-event time τ. A basic ingredient was constructed by assuming the significance of a newly occurring historical event depending on the magnitude of a preceding event, the decrease of its significance by oblivion during the successive events, and an independent Poisson process for the occurrence of the event. The frequency distribution of τ was derived by integrating the basic ingredient with respect to all social fields and to all stake holders. The function of such a distribution was revealed as the forms of an exponential type, a power law type or an exponential-with-a-tail type depending on the values of constants appearing in the ingredient. The validity of this model was studied by applying it to the two cases of Modern China and Northern Ireland Troubles, where the τ-distribution varies depending on the different countries interacting with China and on the different stage of history of the Troubles, respectively. This indicates that history is consisted from many components with such different types of τ-distribution, which are the similar situation to the cases of other general human activities.

Geochemical and mineralogical characterization of a neutral, low-sulfide/high-carbonate tailings impoundment, Markušovce, eastern Slovakia.

PubMed

Hiller, Edgar; Petrák, Marián; Tóth, Roman; Lalinská-Voleková, Bronislava; Jurkovič, L'ubomír; Kučerová, Gabriela; Radková, Anežka; Sottník, Peter; Vozár, Jaroslav

2013-11-01

Tailings deposits generated from mining activities represent a potential risk for the aquatic environment through the release of potentially toxic metals and metalloids occurring in a variety of minerals present in the tailings. Physicochemical and mineralogical characteristics of tailings such as total concentrations of chemical elements, pH, ratio of acid-producing to acid-neutralizing minerals, and primary and secondary mineral phases are very important factors that control the actual release of potentially toxic metals and metalloids from the tailings to the environment. The aims of this study are the determination of geochemical and mineralogical characteristics of tailings deposited in voluminous impoundment situated near the village of Markušovce (eastern Slovakia) and identification of the processes controlling the mobility of selected toxic metals (Cu, Hg) and metalloids (As, Sb). The studied tailings have unique features in comparison with the other tailings investigated previously because of the specific mineral assemblage primarily consisting of barite, siderite, quartz, and minor sulfides. To meet the aims, samples of the tailings were collected from 3 boreholes and 15 excavated pits and subjected to bulk geochemical analyses (i.e., determination of chemical composition, pH, Eh, acid generation, and neutralization potentials) combined with detailed mineralogical characterization using optical microscopy, X-ray diffraction (XRD), electron microprobe analysis (EMPA), and micro-X-ray diffraction (μ-XRD). Additionally, the geochemical and mineralogical factors controlling the transfer of potentially toxic elements from tailings to waters were also determined using short-term batch test (European norm EN 12457), sampling of drainage waters and speciation-equilibrium calculations performed with PHREEQC. The tailings mineral assemblage consists of siderite, barite, quartz, and dolomite. Sulfide minerals constitute only a minor proportion of the tailings mineral assemblage and their occurrence follows the order: chalcopyrite > pyrite > tetrahedrite>arsenopyrite. The mineralogical composition of the tailings corresponds well to the primary mineralization mined. The neutralization capacity of the tailings is high, as confirmed by the values of neutralization potential to acid generation potential ratio, ranging from 6.7 to 63.9, and neutral to slightly alkaline pH of the tailings (paste pH 7.16-8.12) and the waters (pH 7.00-8.52). This is explained by abundant occurrence of carbonate minerals in the tailings, which readily neutralize the acidity generated by sulfide oxidation. The total solid-phase concentrations of metal(loid)s decrease as Cu>Sb>Hg>As and reflect the proportions of sulfides present in the tailings. Sulfide oxidation generally extends to a depth of 2 m. μ-XRD and EMPA were used to study secondary products developed on the surface of sulfide minerals and within the tailings. The main secondary minerals identified are goethite and X-ray amorphous Fe oxyhydroxides and their occurrence decreases with increasing tailings depth. Secondary Fe phases are found as mineral coatings or individual grains and retain relatively high amounts of metal(loid)s (up to 57.6 wt% Cu, 1.60 wt% Hg, 23.8 wt% As, and 2.37 wt% Sb). Based on batch leaching tests and lysimeter results, the mobility of potentially toxic elements in the tailings is low. The limited mobility of metals and metalloids is due to their retention by Fe oxyhydroxides and low solubilities of metal(loid)-bearing sulfides. The observations are consistent with PHREEQC calculations, which predict the precipitation of Fe oxyhydroxides as the main solubility-controlling mineral phases for As, Cu, Hg, and Sb. Waters discharging from tailings impoundment are characterized by a neutral to slightly alkaline pH (7.52-7.96) and low concentrations of dissolved metal(loid)s (<5-7.0 μg/L Cu, <0.1-0.3 μg/L Hg, 5.0-16 μg/L As, and 5.0-43 μg/L Sb). Primary factors influencing aqueous chemistry at the site are mutual processes of sulfide oxidation and carbonate dissolution as well as precipitation reactions and sorption onto hydrous ferric oxides abundantly present at the discharge of the impoundment waters. The results of the study show that, presently, there are no threats of acid mine drainage formation at the site and significant contamination of natural aquatic ecosystem in the close vicinity of the tailings impoundment.

Capture efficiency and injury rates of band-tailed pigeons using whoosh nets

USGS Publications Warehouse

Coxen, Christopher L.; Collins, Daniel P.; Carleton, Scott A.

2018-01-01

Catching ground feeding birds has typically been accomplished through small, walk-in funnel-style traps. This approach is limited because it requires a bird to find its way into the trap, is biased toward less wary birds, and does not allow targeted trapping of individual birds. As part of a large study on Band-tailed Pigeons (Patagioenas fasciata) in New Mexico, we needed a trapping method that would allow more control over the number of birds we could trap at one time, when a trap was deployed, and target trapping of specific individuals. We adopted a relatively novel trapping technique used primarily for shorebirds, whoosh nets, to trap Band-tailed Pigeons at 3 different sites where birds were being fed by local landowners. During 2013–2015, whoosh nets were used to trap 702 Band-tailed Pigeons at 3 different locations in New Mexico. We captured 12.54 ± 8.19 pigeons per shot over 56 capture events across 3 locations (range: 2–39). Some superficial injuries occurred using this technique and typically involved damage to the primary and secondary wing coverts. In 2013, 24% of captured birds had an injury of this nature, but after modifying the net speed, injury rates in 2014 and 2015 dropped to 8% and 7%, respectively. Recaptured previously injured birds showed new feather growth within 2 weeks and showed no signs of injury after 4 weeks. Whoosh nets proved to be a highly effective solution for trapping large numbers of pigeons at baited sites. These systems are easily transported, quickly deployed, and easily adapted to a variety of site conditions.