The Validity of Quasi-Steady-State Approximations in Discrete Stochastic Simulations

PubMed Central

Kim, Jae Kyoung; Josić, Krešimir; Bennett, Matthew R.

2014-01-01

In biochemical networks, reactions often occur on disparate timescales and can be characterized as either fast or slow. The quasi-steady-state approximation (QSSA) utilizes timescale separation to project models of biochemical networks onto lower-dimensional slow manifolds. As a result, fast elementary reactions are not modeled explicitly, and their effect is captured by nonelementary reaction-rate functions (e.g., Hill functions). The accuracy of the QSSA applied to deterministic systems depends on how well timescales are separated. Recently, it has been proposed to use the nonelementary rate functions obtained via the deterministic QSSA to define propensity functions in stochastic simulations of biochemical networks. In this approach, termed the stochastic QSSA, fast reactions that are part of nonelementary reactions are not simulated, greatly reducing computation time. However, it is unclear when the stochastic QSSA provides an accurate approximation of the original stochastic simulation. We show that, unlike the deterministic QSSA, the validity of the stochastic QSSA does not follow from timescale separation alone, but also depends on the sensitivity of the nonelementary reaction rate functions to changes in the slow species. The stochastic QSSA becomes more accurate when this sensitivity is small. Different types of QSSAs result in nonelementary functions with different sensitivities, and the total QSSA results in less sensitive functions than the standard or the prefactor QSSA. We prove that, as a result, the stochastic QSSA becomes more accurate when nonelementary reaction functions are obtained using the total QSSA. Our work provides an apparently novel condition for the validity of the QSSA in stochastic simulations of biochemical reaction networks with disparate timescales. PMID:25099817

The Colorado Plateau is a decaying landscape where erosion is decoupled from topography and most proposed tectonic drivers

NASA Astrophysics Data System (ADS)

Pederson, J. L.

2012-12-01

The great, active orogenic plateaus of the world have been the inspiration for modern tectonic geomorphology, including our recognition of elegant linkages between erosion, topography, tectonics and climate feedbacks, such as in steady-state landscapes. None of that correctly describes the landscape evolution of the Colorado Plateau in the southwestern U.S. Here I present new calculations of river energy and steepness as well as new incision-rate data along the upper Colorado River drainage, and then relate these patterns to recently proposed sources of mantle-driven uplift. The results indicate a complex decoupling of erosion, topography and active tectonics, with instead strong relations to bedrock resistance and passive isostatic feedback in this mostly decaying landscape. Calculations of unit stream power and a newly improved (discharge-adjusted) steepness index (kqsn) in the upper Colorado-Green drainage highlight four canyon knickzones. Each is characterized by energy expenditure an order of magnitude greater than in intervening reaches, and the knickzones generally increase in magnitude downstream with Cataract Canyon being the greatest anomaly. The strong coincidence of knickzones with changes in bedrock and mass-movement inputs suggests they are mostly pinned, equilibrium adjustments to greater bed resistance, with possible transient behavior in farther upstream knickzones. Similarly, new late-Pleistocene incision rate data exist for four locations spanning the trunk drainage -at Lee's Ferry, AZ, near Green River and Moab, UT, and in Browns Park within the Uinta knickzone. Each chronostratigraphic record is based upon multiple OSL, CRN, and U-series ages, and incision rates are calculated over the same timescale and integrate through the strong, cyclic grade changes imparted on the river by Milankovich-scale climate changes. This avoids the erroneous comparison of incision rates based upon single ages or over varying timescales. Comparision of apples-to-apples across this landscape reveals a distinct central-Colorado Plateau bullseye of faster river incision that contrasts sharply with expectations based upon the patterns of energy expenditure and topography, but which matches modeled isostatic rebound from broad late Cenozoic exhumation of the Canyonlands district. Finally, recently proposed sources of late-Cenozoic mantle-driven support for topography at the south and west flanks of the plateau have low estimated rates of uplift, which are poorly constrained in terms of actual ongoing uplift versus just topographic support. Patterns of steepness and incision rate do not match the proposed mantle uplift, illustrating a poorly understood decoupling of erosion, topography, and mantle tectonics in the Colorado Plateau. Prime examples of this decoupling are the highly incised and steep Grand Canyon region where there are proposed sources of mantle uplift but contrastingly low rates of incision, versus the broadly exhumed central plateau that features much more rapid incision yet no mantle sources of uplift. Instead of active tectonics, bedrock resistance and possible drainage transients define geomorphic patterns in this landscape, while at broader wavelengths, the central plateau bullseye of rapid incision strongly matches the pattern of passive isostatic rebound.

Overview of Edge Simulation Laboratory (ESL)

NASA Astrophysics Data System (ADS)

Cohen, R. H.; Dorr, M.; Hittinger, J.; Rognlien, T.; Umansky, M.; Xiong, A.; Xu, X.; Belli, E.; Candy, J.; Snyder, P.; Colella, P.; Martin, D.; Sternberg, T.; van Straalen, B.; Bodi, K.; Krasheninnikov, S.

2006-10-01

The ESL is a new collaboration to build a full-f electromagnetic gyrokinetic code for tokamak edge plasmas using continuum methods. Target applications are edge turbulence and transport (neoclassical and anomalous), and edge-localized modes. Initially the project has three major threads: (i) verification and validation of TEMPEST, the project's initial (electrostatic) edge code which can be run in 4D (neoclassical and transport-timescale applications) or 5D (turbulence); (ii) design of the next generation code, which will include more complete physics (electromagnetics, fluid equation option, improved collisions) and advanced numerics (fully conservative, high-order discretization, mapped multiblock grids, adaptivity), and (iii) rapid-prototype codes to explore the issues attached to solving fully nonlinear gyrokinetics with steep radial gradiens. We present a brief summary of the status of each of these activities.

Non-Markovian properties and multiscale hidden Markovian network buried in single molecule time series

NASA Astrophysics Data System (ADS)

Sultana, Tahmina; Takagi, Hiroaki; Morimatsu, Miki; Teramoto, Hiroshi; Li, Chun-Biu; Sako, Yasushi; Komatsuzaki, Tamiki

2013-12-01

We present a novel scheme to extract a multiscale state space network (SSN) from single-molecule time series. The multiscale SSN is a type of hidden Markov model that takes into account both multiple states buried in the measurement and memory effects in the process of the observable whenever they exist. Most biological systems function in a nonstationary manner across multiple timescales. Combined with a recently established nonlinear time series analysis based on information theory, a simple scheme is proposed to deal with the properties of multiscale and nonstationarity for a discrete time series. We derived an explicit analytical expression of the autocorrelation function in terms of the SSN. To demonstrate the potential of our scheme, we investigated single-molecule time series of dissociation and association kinetics between epidermal growth factor receptor (EGFR) on the plasma membrane and its adaptor protein Ash/Grb2 (Grb2) in an in vitro reconstituted system. We found that our formula successfully reproduces their autocorrelation function for a wide range of timescales (up to 3 s), and the underlying SSNs change their topographical structure as a function of the timescale; while the corresponding SSN is simple at the short timescale (0.033-0.1 s), the SSN at the longer timescales (0.1 s to ˜3 s) becomes rather complex in order to capture multiscale nonstationary kinetics emerging at longer timescales. It is also found that visiting the unbound form of the EGFR-Grb2 system approximately resets all information of history or memory of the process.

Time Series Analysis of the Quasar PKS 1749+096

NASA Astrophysics Data System (ADS)

Lam, Michael T.; Balonek, T. J.

2011-01-01

Multiple timescales of variability are observed in quasars at a variety of wavelengths, the nature of which is not fully understood. In 2007 and 2008, the quasar 1749+096 underwent two unprecedented optical outbursts, reaching a brightness never before seen in our twenty years of monitoring. Much lower level activity had been seen prior to these two outbursts. We present an analysis of the timescales of variability over the two regimes using a variety of statistical techniques. An IDL software package developed at Colgate University over the summer of 2010, the Quasar User Interface (QUI), provides effective computation of four time series functions for analyzing underlying trends present in generic, discretely sampled data sets. Using the Autocorrelation Function, Structure Function, and Power Spectrum, we are able to quickly identify possible variability timescales. QUI is also capable of computing the Cross-Correlation Function for comparing variability at different wavelengths. We apply these algorithms to 1749+096 and present our analysis of the timescales for this object. Funding for this project was received from Colgate University, the Justus and Jayne Schlichting Student Research Fund, and the NASA / New York Space Grant.

Long-time atomistic simulations with the Parallel Replica Dynamics method

NASA Astrophysics Data System (ADS)

Perez, Danny

Molecular Dynamics (MD) -- the numerical integration of atomistic equations of motion -- is a workhorse of computational materials science. Indeed, MD can in principle be used to obtain any thermodynamic or kinetic quantity, without introducing any approximation or assumptions beyond the adequacy of the interaction potential. It is therefore an extremely powerful and flexible tool to study materials with atomistic spatio-temporal resolution. These enviable qualities however come at a steep computational price, hence limiting the system sizes and simulation times that can be achieved in practice. While the size limitation can be efficiently addressed with massively parallel implementations of MD based on spatial decomposition strategies, allowing for the simulation of trillions of atoms, the same approach usually cannot extend the timescales much beyond microseconds. In this article, we discuss an alternative parallel-in-time approach, the Parallel Replica Dynamics (ParRep) method, that aims at addressing the timescale limitation of MD for systems that evolve through rare state-to-state transitions. We review the formal underpinnings of the method and demonstrate that it can provide arbitrarily accurate results for any definition of the states. When an adequate definition of the states is available, ParRep can simulate trajectories with a parallel speedup approaching the number of replicas used. We demonstrate the usefulness of ParRep by presenting different examples of materials simulations where access to long timescales was essential to access the physical regime of interest and discuss practical considerations that must be addressed to carry out these simulations. Work supported by the United States Department of Energy (U.S. DOE), Office of Science, Office of Basic Energy Sciences, Materials Sciences and Engineering Division.

Orographic Barriers, Rainshadows, and Earth Surface Processes in the Central Andes

NASA Astrophysics Data System (ADS)

Bookhagen, B.; Strecker, M. R.

2016-12-01

The Central Andes of NW Argentina, northern Chile, and SW Bolivia are characterized by a steep E-W topographic, climatic and environmental gradient. The first windward topographic rise in the eastern Central Andes forces high orographic rainfall and dense vegetation. In contrast, the higher-elevation areas of the windward flanks become progressively drier, until arid conditions are attained in the orogen interior. On seasonal, annual, and inter-annual timescales, large rainstorms may propagate into the semi-arid to arid high-elevation sectors and cause erosion and mass-transport processes that impact infrastructure and the natural environment. Similar to these present-day effects of climate variability the Central Andes experienced pronounced paleoclimatic changes with deeper penetration of moisture into the orogen and thus an orogenward shift of the climate gradient during Pleistocene and Holocene times, lasting several millennia. In this presentation, we demonstrate the impact of climate change on Earth surface processes at different timescales ranging from the late Pleistocene to the past decade. For millennial timescales and beyond, we rely on field observations, dating of geomorphic markers, erosion rates from cosmogenic nuclide dating, and the analysis of sedimentary archives to reconstruct past environmental conditions. For the last decades we use, satellite-derived rainfall and landcover observations, climate models, hydrometeorologic data, and riverbed-elevation changes are used to characterize environmental and atmospheric conditions. Decadal-scale climate variability shows statistically significant hydrometeorologic trends and exhibits changes of fluvial-transport magnitudes. Hydrometeorologic data, their trends and change points suggest that highest rainfall magnitudes have increased most in the past decades, resulting in large, event-driven mass-transport processes with fundamental impacts on population and infrastructure.

Recent topographic evolution and erosion of the deglaciated Washington Cascades inferred from a stochastic landscape evolution model

NASA Astrophysics Data System (ADS)

Moon, S.; Shelef, E.; Hilley, G. E.

2013-12-01

The Washington Cascades is currently in topographic and erosional disequilibrium after deglaciation occurred around 11- 17 ka ago. The topography still shows the features inherited from prior alpine glacial processes (e.g., cirques, steep side-valleys, and flat valley bottoms), though postglacial processes are currently denuding this landscape. Our previous study in this area calculated the thousand-year-timescale denudation rates using cosmogenic 10Be concentration (CRN-denudation rates), and showed that they were ~ four times higher than million-year-timescale uplift rates. In addition, the spatial distribution of denudation rates showed a good correlation with a factor-of-ten variation in precipitation. We interpreted this correlation as reflecting the sensitivity of landslide triggering in over-steepened deglaciated topography to precipitation, which produced high denudation rates in wet areas that experienced frequent landsliding. We explored this interpretation using a model of postglacial surface processes that predicts the evolution of the topography and denudation rates within the deglaciated Washington Cascades. Specifically, we used the model to understand the controls on and timescales of landscape response to changes in the surface process regime after deglaciation. The postglacial adjustment of this landscape is modeled using a geomorphic-transport-law-based numerical model that includes processes of river incision, hillslope diffusion, and stochastic landslides. The surface lowering due to landslides is parameterized using a physically-based slope stability model coupled to a stochastic model of the generation of landslides. The model parameters of river incision and stochastic landslides are calibrated based on the rates and distribution of thousand-year-timescale denudation rates measured from cosmogenic 10Be isotopes. The probability distribution of model parameters required to fit the observed denudation rates shows comparable ranges from previous studies in similar rock types and climatic conditions. The calibrated parameters suggest that the dominant sediment source of river sediments originates from stochastic landslides. The magnitude of landslide denudation rates is determined by failure density (similar to landslide frequency), while their spatial distribution is largely controlled by precipitation and slope angles. Simulation results show that denudation rates decay over time and take approximately 130-180 ka to reach steady-state rates. This response timescale is longer than glacial/interglacial cycles, suggesting that frequent climatic perturbations during the Quaternary may prevent these types of landscapes from reaching a dynamic equilibrium with postglacial processes.

Timescales of Land Surface Evapotranspiration Response

NASA Technical Reports Server (NTRS)

Scott, Russell; Entekhabi, Dara; Koster, Randal; Suarez, Max

1997-01-01

Soil and vegetation exert strong control over the evapotranspiration rate, which couples the land surface water and energy balances. A method is presented to quantify the timescale of this surface control using daily general circulation model (GCM) simulation values of evapotranspiration and precipitation. By equating the time history of evaporation efficiency (ratio of actual to potential evapotranspiration) to the convolution of precipitation and a unit kernel (temporal weighting function), response functions are generated that can be used to characterize the timescales of evapotranspiration response for the land surface model (LSM) component of GCMS. The technique is applied to the output of two multiyear simulations of a GCM, one using a Surface-Vegetation-Atmosphere-Transfer (SVAT) scheme and the other a Bucket LSM. The derived response functions show that the Bucket LSM's response is significantly slower than that of the SVAT across the globe. The analysis also shows how the timescales of interception reservoir evaporation, bare soil evaporation, and vegetation transpiration differ within the SVAT LSM.

Algebraic motion of vertically displacing plasmas

NASA Astrophysics Data System (ADS)

Bhattacharjee, Amitava; Pfefferle, David; Hirvijoki, Eero

2017-10-01

The vertical displacement of tokamak plasmas is modelled during the non-linear phase by a free-moving current-carrying rod coupled to a set of fixed conducting wires and a cylindrical conducting shell. The models capture the leading term in a Taylor expansion of the Green's function for the interaction between the plasma column and the vacuum vessel. The plasma is assumed not to vary during the VDE such that it behaves as a rigid body. In the limit of perfectly conducting structures, the plasma is prevented from coming in contact with the wall due to steep effective potential barriers by the eddy currents, and will hence oscillate at Alfvénic frequencies about a given force-free position. In addition to damping oscillations, resistivity allows for the column to drift towards the vessel on slow flux penetration timescales. The initial exponential motion of the plasma, i.e. the resistive vertical instability, is succeeded by a non-linear sinking behaviour, that is shown analytically to be algebraic and decelerative. The acceleration of the plasma column often observed in experiments is thus conjectured to originate from an early sharing of toroidal current between the core, the halo plasma and the wall or from the thermal quench dynamics precipitating loss of plasma current

Algebraic motion of vertically displacing plasmas

DOE PAGES

Pfefferle, D.; Bhattacharjee, A.

2018-02-27

In this paper, the vertical motion of a tokamak plasma is analytically modelled during its non-linear phase by a free-moving current-carrying rod inductively coupled to a set of fixed conducting wires or a cylindrical conducting shell. The solutions capture the leading term in a Taylor expansion of the Green's function for the interaction between the plasma column and the surrounding vacuum vessel. The plasma shape and profiles are assumed not to vary during the vertical drifting phase such that the plasma column behaves as a rigid body. In the limit of perfectly conducting structures, the plasma is prevented to comemore » in contact with the wall due to steep effective potential barriers created by the induced Eddy currents. Resistivity in the wall allows the equilibrium point to drift towards the vessel on the slow timescale of flux penetration. The initial exponential motion of the plasma, understood as a resistive vertical instability, is succeeded by a non-linear “sinking” behaviour shown to be algebraic and decelerating. Finally, the acceleration of the plasma column often observed in experiments is thus concluded to originate from an early sharing of toroidal current between the core, the halo plasma, and the wall or from the thermal quench dynamics precipitating loss of plasma current.« less

Algebraic motion of vertically displacing plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pfefferle, D.; Bhattacharjee, A.

In this paper, the vertical motion of a tokamak plasma is analytically modelled during its non-linear phase by a free-moving current-carrying rod inductively coupled to a set of fixed conducting wires or a cylindrical conducting shell. The solutions capture the leading term in a Taylor expansion of the Green's function for the interaction between the plasma column and the surrounding vacuum vessel. The plasma shape and profiles are assumed not to vary during the vertical drifting phase such that the plasma column behaves as a rigid body. In the limit of perfectly conducting structures, the plasma is prevented to comemore » in contact with the wall due to steep effective potential barriers created by the induced Eddy currents. Resistivity in the wall allows the equilibrium point to drift towards the vessel on the slow timescale of flux penetration. The initial exponential motion of the plasma, understood as a resistive vertical instability, is succeeded by a non-linear “sinking” behaviour shown to be algebraic and decelerating. Finally, the acceleration of the plasma column often observed in experiments is thus concluded to originate from an early sharing of toroidal current between the core, the halo plasma, and the wall or from the thermal quench dynamics precipitating loss of plasma current.« less

The Nanograv Nine-Year Data Set: Measurement and Analysis of Variations in Dispersion Measures

NASA Technical Reports Server (NTRS)

Jones, M. L.; McLaughlin, M. A.; Lam, M. T.; Cordes, J. M.; Levin, L.; Chatterjee, S.; Arzoumanian, Z.; Crowter, K.; Demorest, P. B.; Dolch, T.;

Monitoring burned and unburned hillslopes from North Carolina to southern California: insights into hydrologic and geomorphic controls on disturbance-recovery cycles

NASA Astrophysics Data System (ADS)

Mirus, B. B.; Kean, J. W.; Smith, J. B.; Staley, D. M.; Wooten, R.; Cattanach, B.; Rengers, F. K.; McGuire, L.; Godt, J.; Lu, N.

2017-12-01

On steep hillslopes, vegetation often provides an important ecosystem function by preventing landsliding, debris flows, and floods, thereby protecting human lives and infrastructure. Disturbances that disrupt vegetation - from wildfire and forest clearing to landslides themselves - can abruptly alter hillslope hydrologic and geomorphic processes thereby increasing the threat of these natural hazards. Two major challenges from a hazard assessment perspective are: (1) quantifying disturbance impacts on near-surface hydrologic responses, and (2) understanding the relevant processes and timescales associated with disturbance-recovery cycles. These challenges are complicated by the limited availability of long-term monitoring in pre- and post-disturbance environments. Therefore, many tools designed to provide rapid situational awareness and improve disaster preparedness and response rely on temporally invariant parameterization or locally derived empirical relations that are not necessarily transferrable across different geologic or climatic settings. Here we examine hillslope hydrologic response in landslide-prone terrain across the continental US, from the West Coast to Appalachia, to explore these issues related to disturbance-recovery cycles. Wildfire is a recurring disturbance along the actively uplifting mountains in semi-arid southern California, and heavy winter storms arriving from the Pacific are frequently able to produce debris flows in recently burned areas. Although wildfire is less common in the much wetter Cascades and Coast Ranges of Oregon and Washington, frequent landslides and forest clearing disturbances also influence hillslope hydrology and slope stability. In contrast, the recent wildfires in Tennessee, Georgia, and North Carolina have highlighted critical knowledge gaps related to post-fire hydrology and natural hazards in the geologically stable and humid sub-tropical southeastern US, where severe wildfires are less common than other disturbances. Our continuous monitoring from several burned and unburned hillslopes across these diverse geologic and climatic settings reveals variations in the disturbance impacts and recovery timescales, as well as the need for further monitoring, modeling, and synthesis across regions and scales.

A Diffusion Approximation Based on Renewal Processes with Applications to Strongly Biased Run-Tumble Motion.

PubMed

Thygesen, Uffe Høgsbro

2016-03-01

We consider organisms which use a renewal strategy such as run-tumble when moving in space, for example to perform chemotaxis in chemical gradients. We derive a diffusion approximation for the motion, applying a central limit theorem due to Anscombe for renewal-reward processes; this theorem has not previously been applied in this context. Our results extend previous work, which has established the mean drift but not the diffusivity. For a classical model of tumble rates applied to chemotaxis, we find that the resulting chemotactic drift saturates to the swimming velocity of the organism when the chemical gradients grow increasingly steep. The dispersal becomes anisotropic in steep gradients, with larger dispersal across the gradient than along the gradient. In contrast to one-dimensional settings, strong bias increases dispersal. We next include Brownian rotation in the model and find that, in limit of high chemotactic sensitivity, the chemotactic drift is 64% of the swimming velocity, independent of the magnitude of the Brownian rotation. We finally derive characteristic timescales of the motion that can be used to assess whether the diffusion limit is justified in a given situation. The proposed technique for obtaining diffusion approximations is conceptually and computationally simple, and applicable also when statistics of the motion is obtained empirically or through Monte Carlo simulation of the motion.

Structural phylogeny by profile extraction and multiple superimposition using electrostatic congruence as a discriminator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chakraborty, Sandeep; Rao, Basuthkar J.; Baker, Nathan A.

2013-04-01

Phylogenetic analysis of proteins using multiple sequence alignment (MSA) assumes an underlying evolutionary relationship in these proteins which occasionally remains undetected due to considerable sequence divergence. Structural alignment programs have been developed to unravel such fuzzy relationships. However, none of these structure based methods have used electrostatic properties to discriminate between spatially equivalent residues. We present a methodology for MSA of a set of related proteins with known structures using electrostatic properties as an additional discriminator (STEEP). STEEP first extracts a profile, then generates a multiple structural superimposition providing a consolidated spatial framework for comparing residues and finally emits themore » MSA. Residues that are aligned differently by including or excluding electrostatic properties can be targeted by directed evolution experiments to transform the enzymatic properties of one protein into another. We have compared STEEP results to those obtained from a MSA program (ClustalW) and a structural alignment method (MUSTANG) for chymotrypsin serine proteases. Subsequently, we used PhyML to generate phylogenetic trees for the serine and metallo-β-lactamase superfamilies from the STEEP generated MSA, and corroborated the accepted relationships in these superfamilies. We have observed that STEEP acts as a functional classifier when electrostatic congruence is used as a discriminator, and thus identifies potential targets for directed evolution experiments. In summary, STEEP is unique among phylogenetic methods for its ability to use electrostatic congruence to specify mutations that might be the source of the functional divergence in a protein family. Based on our results, we also hypothesize that the active site and its close vicinity contains enough information to infer the correct phylogeny for related proteins.« less

Nanoparticle agglomeration in an evaporating levitated droplet for different acoustic amplitudes

NASA Astrophysics Data System (ADS)

Tijerino, Erick; Basu, Saptarshi; Kumar, Ranganathan

2013-01-01

Radiatively heated levitated functional droplets with nanosilica suspensions exhibit three distinct stages namely pure evaporation, agglomeration, and finally structure formation. The temporal history of the droplet surface temperature shows two inflection points. One inflection point corresponds to a local maximum and demarcates the end of transient heating of the droplet and domination of vaporization. The second inflection point is a local minimum and indicates slowing down of the evaporation rate due to surface accumulation of nanoparticles. Morphology and final precipitation structures of levitated droplets are due to competing mechanisms of particle agglomeration, evaporation, and shape deformation. In this work, we provide a detailed analysis for each process and propose two important timescales for evaporation and agglomeration that determine the final diameter of the structure formed. It is seen that both agglomeration and evaporation timescales are similar functions of acoustic amplitude (sound pressure level), droplet size, viscosity, and density. However, we show that while the agglomeration timescale decreases with initial particle concentration, the evaporation timescale shows the opposite trend. The final normalized diameter can be shown to be dependent solely on the ratio of agglomeration to evaporation timescales for all concentrations and acoustic amplitudes. The structures also exhibit various aspect ratios (bowls, rings, spheroids) which depend on the ratio of the deformation timescale (tdef) and the agglomeration timescale (tg). For tdef

Evidence of strategic periodicities in collective conflict dynamics.

PubMed

Dedeo, Simon; Krakauer, David; Flack, Jessica

2011-09-07

We analyse the timescales of conflict decision-making in a primate society. We present evidence for multiple, periodic timescales associated with social decision-making and behavioural patterns. We demonstrate the existence of periodicities that are not directly coupled to environmental cycles or known ultraridian mechanisms. Among specific biological and socially defined demographic classes, periodicities span timescales between hours and days. Our results indicate that these periodicities are not driven by exogenous or internal regularities but are instead driven by strategic responses to social interaction patterns. Analyses also reveal that a class of individuals, playing a critical functional role, policing, have a signature timescale of the order of 1 h. We propose a classification of behavioural timescales analogous to those of the nervous system, with high frequency, or α-scale, behaviour occurring on hour-long scales, through to multi-hour, or β-scale, behaviour, and, finally γ periodicities observed on a timescale of days.

Himalayan Strain Accumulation 100 ka Timescales

NASA Astrophysics Data System (ADS)

Cannon, J. M.; Murphy, M. A.; Liu, Y.

2015-12-01

Crustal scale fault systems and tectonostratigraphic units in the Himalaya can be traced for 2500 km along strike. However regional studies have shown that there is variability in the location and rate of strain accumulation which appears to be driven by Main Himalayan Thrust (MHT) geometry and convergence obliquity. GPS illuminates the modern interseismic strain rate and the historical record of great earthquakes elucidates variations in strain accumulation over 103 years. To connect these patterns with the 106 year structural and thermochronometric geologic record we examine normalized river channel steepness (ksn), a proxy for rock uplift rate, which develops over 104 - 105 years. Here we present a ksn map of the Himalaya and compare it with bedrock geology, precipitation, the historic earthquake record, GPS, seismicity, and seismotectonic models. Our map shows significant along strike changes in the magnitude of channel steepness, the areal extent of swaths of high ksn channels, and their location with respect to the range front. Differences include the juxtaposition of two narrow (30 - 40 km) range parallel belts of high ksn in west Nepal and Bhutan coincident with MHT duplexes and belts of microseismcity, with a single broad (70 km) swath of high ksn and microseismicity in central and eastern Nepal. Separating west and central Nepal a band of low ksn crosses the range coincident with the West Nepal Fault (WNF) and the lowest rate of microseismicity in Nepal. To the west the orogen is obliquely convergent and has less high ksn channels, while the orthogonally convergent region to the east contains the highest concentration of oversteepened channels in the Himalaya supporting the idea that the WNF is a strain partitioning boundary. The syntaxes are characterized by locally high channel steepness surrounded by low to moderate ksn channels consistent with the hypothesis that rapid exhumation within the syntaxes is sustained by an influx of lower crust.

The Extracellular Matrix in Photosynthetic Mats: A Cyanobacterial Gingerbread House

NASA Astrophysics Data System (ADS)

Stuart, R.; Stannard, W.; Bebout, B.; Pett-Ridge, J.; Mayali, X.; Weber, P. K.; Lipton, M. S.; Lee, J.; Everroad, R. C.; Thelen, M.

2014-12-01

Hypersaline laminated cyanobacterial mats are excellent model systems for investigating photoautotrophic contributions to biogeochemical cycling on a millimeter scale. These self-sustaining ecosystems are characterized by steep physiochemical gradients that fluctuate dramatically on hour timescales, providing a dynamic environment to study microbial response. However, elucidating the distribution of energy from light absorption into biomass requires a complete understanding of the various constituents of the mat. Extracellular polymeric substances (EPS), which can be composed of proteins, polysaccharides, lipids and DNA are a major component of these mats and may function in the redistribution of nutrients and metabolites within the community. To test this notion, we established a model mat-building culture for comparison with the phylogenetically diverse natural mat communities. In these two systems we determined how proteins and glycans in the matrix changed as a function of light and tracked nutrient flow from the matrix. Using mass spectrometry metaproteomics analysis, we found homologous proteins in both field and culture extracellular matrix that point to cyanobacterial turnover of amino acids, inorganic nutrients, carbohydrates and nucleic acids from the EPS. Other abundant functions identified included oxidative stress response from both the cyanobacteria and heterotrophs and cyanobacterial structural proteins that may play a role in mat cohesion. Several degradative enzymes also varied in abundance in the EPS in response to light availability, suggesting active secretion. To further test cyanobacterial EPS turnover, we generated isotopically-labeled EPS and used NanoSIMS to trace uptake of this labeled EPS. Our findings suggest Cyanobacteria may facilitate nutrient transfer to other groups, as well as uptake of their own products through degradation of EPS components. This work provides evidence for the essential roles of EPS for storage, structural cohesion and protection, with active light-dependent turnover by both Cyanobacteria and the heterotrophic community.

Comparing records with related chronologies

NASA Astrophysics Data System (ADS)

Bronk Ramsey, Christopher; Albert, Paul; Kearney, Rebecca; Staff, Richard A.

2016-04-01

In order to integrate ice, terrestrial and marine records, it is necessary to deal with records on different timescales. These timescales can be grouped into those that use a common fundamental chronometer (such as Uranium-Thorium dating or Radiocarbon) and can also be related to one another where we have chronological tie points such as tephra horizons. More generally we can, through a number of different methodologies, derive relationships between different timescales. A good example of this is the use of cosmogenic isotope production, specifically 10Be and 14C to relate the calibrated radiocarbon timescale to that of the Greenland ice cores. The relationships between different timescales can be mathematically expressed in terms of time-transfer functions. This formalism allows any related record to be considered against any linked timescale with an appropriate associated uncertainty. The prototype INTIMATE chronological database allows records to be viewed and compared in this way and this is now being further developed, both to include a wider range of records and also to provide better connectivity to other databases and chronological tools. These developments will also include new ways to use tephra tie-points to constrain the relationship between timescales directly, without needing to remodel each associated timescale. The database as it stands allows data for particular timeframes to be recalled and plotted against any timescale, or exported in spreadsheet format. New functionality will be added to allow users to work with their own data in a private space and then to publish it when it has been through the peer-review publication process. In order to make the data easier to use for other further analysis and plotting, and with data from other sources, the database will also act as a server to deliver data in a JSON format. The aim of this work is to make the comparison of integrated data much easier for researchers and to ensure that good practice in qualifying chronological uncertainty in record comparison is much more widespread.

Wet-milling transgenic maize seed for fraction enrichment of recombinant subunit vaccine.

PubMed

Moeller, Lorena; Taylor-Vokes, Raye; Fox, Steve; Gan, Qinglei; Johnson, Lawrence; Wang, Kan

2010-01-01

The production of recombinant proteins in plants continues to be of great interest for prospective large-scale manufacturing of industrial enzymes, nutrition products, and vaccines. This work describes fractionation by wet-milling of transgenic maize expressing the B subunit of the heat-labile enterotoxin of Escherichia coli (LT-B), a potent immunogen and candidate for oral vaccine and vaccine components. The LT-B gene was directed to express in seed by an endosperm specific promoter. Two steeping treatments, traditional steeping (TS, 0.2% SO(2) + 0.5% lactic acid) and water steeping (WS, water only), were evaluated to determine effects on recovery of functional LT-B in wet-milled fractions. The overall recovery of the LT-B protein from WS treatment was 1.5-fold greater than that from TS treatment. In both steeping types, LT-B was distributed similarly among the fractions, resulting in enrichment of functional LT-B in fine fiber, coarse fiber and pericarp fractions by concentration factors of 1.5 to 8 relative to the whole kernels on a per-mass basis. Combined with endosperm-specific expression and secretory pathway targeting, wet-milling enables enrichment of high-value recombinant proteins in low-value fractions, such as the fine fiber, and co-utilization of remaining fractions in alternative industrial applications.

Extracting information from AGN variability

NASA Astrophysics Data System (ADS)

Kasliwal, Vishal P.; Vogeley, Michael S.; Richards, Gordon T.

2017-09-01

Active galactic nuclei (AGNs) exhibit rapid, high-amplitude stochastic flux variations across the entire electromagnetic spectrum on time-scales ranging from hours to years. The cause of this variability is poorly understood. We present a Green's function-based method for using variability to (1) measure the time-scales on which flux perturbations evolve and (2) characterize the driving flux perturbations. We model the observed light curve of an AGN as a linear differential equation driven by stochastic impulses. We analyse the light curve of the Kepler AGN Zw 229-15 and find that the observed variability behaviour can be modelled as a damped harmonic oscillator perturbed by a coloured noise process. The model power spectrum turns over on time-scale 385 d. On shorter time-scales, the log-power-spectrum slope varies between 2 and 4, explaining the behaviour noted by previous studies. We recover and identify both the 5.6 and 67 d time-scales reported by previous work using the Green's function of the Continuous-time AutoRegressive Moving Average equation rather than by directly fitting the power spectrum of the light curve. These are the time-scales on which flux perturbations grow, and on which flux perturbations decay back to the steady-state flux level, respectively. We make the software package kālī used to study light curves using our method available to the community.

Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling.

PubMed

Berthier, Ludovic; Charbonneau, Patrick; Coslovich, Daniele; Ninarello, Andrea; Ozawa, Misaki; Yaida, Sho

2017-10-24

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation. Published under the PNAS license.

Breaking the glass ceiling: Configurational entropy measurements in extremely supercooled liquids

NASA Astrophysics Data System (ADS)

Berthier, Ludovic

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, due to the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally-relevant timescales. In this work we not only close the colossal gap between experiments and simulations but manage to create in-silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four independent estimates of their configurational entropy. These measurements consistently indicate that the steep entropy decrease observed in experiments is found in simulations even beyond the experimental glass transition. Our numerical results thus open a new observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation.

Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling

PubMed Central

Berthier, Ludovic; Charbonneau, Patrick; Coslovich, Daniele; Ninarello, Andrea; Ozawa, Misaki

2017-01-01

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation. PMID:29073056

Configurational entropy measurements in extremely supercooled liquids that break the glass ceiling

NASA Astrophysics Data System (ADS)

Berthier, Ludovic; Charbonneau, Patrick; Coslovich, Daniele; Ninarello, Andrea; Ozawa, Misaki; Yaida, Sho

2017-10-01

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation.

Ion beam figuring of highly steep mirrors with a 5-axis hybrid machine tool

NASA Astrophysics Data System (ADS)

Yin, Xiaolin; Tang, Wa; Hu, Haixiang; Zeng, Xuefeng; Wang, Dekang; Xue, Donglin; Zhang, Feng; Deng, Weijie; Zhang, Xuejun

2018-02-01

Ion beam figuring (IBF) is an advanced and deterministic method for optical mirror surface processing. The removal function of IBF varies with the different incident angles of ion beam. Therefore, for the curved surface especially the highly steep one, the Ion Beam Source (IBS) should be equipped with 5-axis machining capability to remove the material along the normal direction of the mirror surface, so as to ensure the stability of the removal function. Based on the 3-RPS parallel mechanism and two dimensional displacement platform, a new type of 5-axis hybrid machine tool for IBF is presented. With the hybrid machine tool, the figuring process of a highly steep fused silica spherical mirror is introduced. The R/# of the mirror is 0.96 and the aperture is 104mm. The figuring result shows that, PV value of the mirror surface error is converged from 121.1nm to32.3nm, and RMS value 23.6nm to 3.4nm.

Peculiar Euphrosyne

NASA Astrophysics Data System (ADS)

Carruba, V.; Aljbaae, S.; Souami, D.

2014-09-01

The asteroid (31) Euphrosyne is the largest body of its namesake family, and it contains more than 99% of the family mass. Among large asteroid families, the Euphrosyne group is peculiar because of its quite steep size-frequency distribution (SFD), significantly depleted in large- and medium-sized asteroids (8 < D < 12 km). The current steep SFD of the Euphrosyne family has been suggested to be the result of a grazing impact in which only the farthest, smallest members failed to accrete. The Euphrosyne family is, however, also very peculiar because of its dynamics: near its center it is crossed by the ν6 = g - g 6 linear secular resonance, and it hosts the largest population (140 bodies) of asteroids in ν6 antialigned librating states (or Tina-like asteroids) in the main belt. In this work we investigated the orbital evolution of newly obtained members of the dynamical family, with an emphasis on its interaction with the ν6 resonance. Because of its unique resonant configuration, large- and medium-sized asteroids tend to migrate away from the family orbital region faster than small-sized objects, which were ejected farther away from the family center. As a consequence, the SFD of the Euphrosyne family becomes steeper in time with a growing depletion in the number of the largest family members. We estimate that the current SFD could be attained from a typical, initial SFD on timescales of 500 Myr, consistent with estimates of the family age obtained with other independent methods.

Peculiar Euphrosyne

NASA Astrophysics Data System (ADS)

Carruba, V.; Aljbaae, S.; Souami, D.

2014-07-01

(31) Euphrosyne is the largest body of its namesake family, and contains more the 99.35% of the family mass. Among asteroid families, the Euphosyne group is peculiar because of its quite steep size frequency distribution, significantly depleted in large and medium- sized asteroids (8 < D < 12~km). The current steep size frequency distribution of the Euphrosyne family has been suggested to be the result of a grazing impact in which only the farthest, smallest members failed to accrete. The Euphrosyne family is however also very peculiar because of its dynamics: near its center it is crossed by the ν_6 = g -g_6 linear secular resonance, and it hosts the largest population (140 bodies) of asteroids in ν_6 anti-aligned librating states (or Tina-like asteroids) in the main belt. In this work we investigated the orbital evolution of newly obtained members of the dynamical family, with an emphasis on its interaction with the ν_6 resonance. Because of its unique resonant configuration, large and medium sized asteroids tend to migrate away from the family orbital region faster than small-sized objects, that were ejected further away from the family center. As a consequence, the size-frequency distribution of the Euphrosyne family becomes steeper in time, with a growing depletion in the number of the largest family members. We estimate that the current size-frequency distribution could be attained from a typical, initial size-frequency distribution in time-scales of the order of 1~Byr, consistently with estimates of the family age obtained with other, independent, methods.

Evolutionary Description of Giant Molecular Cloud Mass Functions on Galactic Disks

NASA Astrophysics Data System (ADS)

Kobayashi, Masato I. N.; Inutsuka, Shu-ichiro; Kobayashi, Hiroshi; Hasegawa, Kenji

2017-02-01

Recent radio observations show that giant molecular cloud (GMC) mass functions noticeably vary across galactic disks. High-resolution magnetohydrodynamics simulations show that multiple episodes of compression are required for creating a molecular cloud in the magnetized interstellar medium. In this article, we formulate the evolution equation for the GMC mass function to reproduce the observed profiles, for which multiple compressions are driven by a network of expanding shells due to H II regions and supernova remnants. We introduce the cloud-cloud collision (CCC) terms in the evolution equation in contrast to previous work (Inutsuka et al.). The computed time evolution suggests that the GMC mass function slope is governed by the ratio of GMC formation timescale to its dispersal timescale, and that the CCC effect is limited only in the massive end of the mass function. In addition, we identify a gas resurrection channel that allows the gas dispersed by massive stars to regenerate GMC populations or to accrete onto pre-existing GMCs. Our results show that almost all of the dispersed gas contributes to the mass growth of pre-existing GMCs in arm regions whereas less than 60% contributes in inter-arm regions. Our results also predict that GMC mass functions have a single power-law exponent in the mass range <105.5 {M}⊙ (where {M}⊙ represents the solar mass), which is well characterized by GMC self-growth and dispersal timescales. Measurement of the GMC mass function slope provides a powerful method to constrain those GMC timescales and the gas resurrecting factor in various environments across galactic disks.

The Coma Cluster Luminosity Function from Ultraviolet to Near-Infrared

NASA Astrophysics Data System (ADS)

Andreon, S.; Cuillandre, J.-C.; Pello, R.

The Coma cluster luminosity function (LF) from ultraviolet (2000 AA ) to the near-infrared (H band) is summarized. In the UV the LF is very steep, much steeper than in the optical. The steep Coma UV LF implies that faint and bright galaxies give similar contributions to the total UV flux and to the total metal production rate. The ComaUV LF is dominated in number and luminosity by blue galaxies, which are often faint in the optical. Therefore the Coma UV LF is dominated by star forming galaxies, not by massive and large galaxies. The optical Coma LF is relatively steep (alpha=-1.4) over the 11 magnitudes sampled, but its slope and shape depend on considered filter and magnitude. We found a clear steeping of the FL going from B to R bands, indicative of the presence of a large number of red dwarfs, as faint as three bright globular clusters. Furthermore, using Hubble Space Telescope images, we discover that blends of globular clusters, not resolved in individual components due to seeing, look like dwarf galaxies when observed from the ground and are numerous and bright. The existence of these fake extended sources increases the steepness of the LF at faint magnitudes, if not deal on. This concern affects previous deep probing of the luminosity function, but not the present work. The near-infrared LF wa s computed on a near-infrared selected sample of galaxies which photometry is complete down to the typical dwarf (M* +5) luminosity. The Coma LF can be described by a Schechter function with intermediate slope (alpha sim-1.3), plus a dip at MH~-22 mag. The shape of the Coma LF in H band is quite similar to th e one found in the B band. The similarity of the LF in the optical and H bands implies that in the central region of Coma there is no new population of galaxies which is too faint to be observed in the optical band (because dust enshrouded, for instance), down to the magnitudes of dwarfs. The exponential cut of the LF at the bright end is in good agreement with the one derived from shallower near-infrared samples o f galaxies, both in clusters and in the field. The faint end of the LF, reaching MH~-19 mag (roughly MB~ -15), is steep, but less than previously suggested from shallower near-infrared observations of an adjacent region in the Coma cluster.

Physicochemical properties of nixtamalized corn flours with and without germ.

PubMed

Vega Rojas, Lineth J; Rojas Molina, Isela; Gutiérrez Cortez, Elsa; Rincón Londoño, Natalia; Acosta Osorio, Andrés A; Del Real López, Alicia; Rodríguez García, Mario E

2017-04-01

This research studied the influence of the germ components on the physicochemical properties of cooked corn and nixtamalized corn flours as a function of the calcium hydroxide content (from 0 to 2.1 w/w) and steeping time (between 0 and 9h). A linear relationship was found between calcium content in germ and steeping time used during nixtamalization process. X-ray diffraction analysis showed that calcium carbonate is formed into the germ structure to 2.1 w/w of calcium hydroxide and 9h steeping time. The presence of the germ improves the development of peak viscosity in flours, and it is related to the increases in calcium concentration in germ and the formation of amylose-lipid complexes. No significant changes were observed in palmitic, stearic, oleic and linoleic acids of corn oil. The levels of further corn oil deterioration were 2.1 w/w of calcium hydroxide concentration and 9h of steeping time. Copyright © 2016 Elsevier Ltd. All rights reserved.

Decoupling of long-term exhumation and short-term erosion rates in the Sikkim Himalaya

NASA Astrophysics Data System (ADS)

Abrahami, Rachel; van der Beek, Peter; Huyghe, Pascale; Hardwick, Elisabeth; Carcaillet, Julien

2016-01-01

Understanding the relative strengths of tectonic and climatic forcing on erosion at different spatial and temporal scales is important to understand the evolution of orogenic topography. To address this question, we quantified exhumation rates at geological timescales and erosion rates at millennial timescales in modern river sands from 10 sub-catchments of the Tista River drainage basin in the Sikkim Himalaya (northeast India) using detrital apatite fission-track thermochronology and cosmogenic 10Be analyses, respectively. We compare these rates to several potential geomorphic or climatic forcing parameters. Our results show that millennial erosion rates are generally higher and spatially more variable than long-term exhumation rates in Sikkim. They also show strongly contrasting spatial patterns, suggesting that the processes controlling these rates are decoupled. At geological timescales, exhumation rates decrease from south to north, with rates up to 1.2 ± 0.6 mm/yr recorded in southwest Sikkim and as low as 0.5 ± 0.2 mm/yr in the northernmost catchment. Long-term exhumation rates do not correlate with any geomorphic or climatic parameter. We suggest they are tectonically controlled: high rates in southwest Sikkim may be linked to the building of the Lesser Himalaya Rangit Duplex, whereas low rates in north Sikkim are consistent with cessation of extensional exhumation along the South Tibetan Detachment after 13 Ma. The highest apparent erosion rates recorded by cosmogenic nuclides (∼5 mm/yr) occur in catchments spanning the Main Central Thrust Zone, but these appear to be strongly influenced by recent landsliding. High millennial erosion rates (1-2 mm/yr) also occur in north Sikkim and may be climatically driven through strong glacial inheritance of the landscape, as attested by high channel-steepness values close to the maximum extent of glaciers during the Last Glacial Maximum. In contrast, variations in rainfall rate do not seem to strongly influence either millennial erosion or long-term exhumation rates in Sikkim.

Hierarchical process memory: memory as an integral component of information processing

PubMed Central

Hasson, Uri; Chen, Janice; Honey, Christopher J.

2015-01-01

Models of working memory commonly focus on how information is encoded into and retrieved from storage at specific moments. However, in the majority of real-life processes, past information is used continuously to process incoming information across multiple timescales. Considering single unit, electrocorticography, and functional imaging data, we argue that (i) virtually all cortical circuits can accumulate information over time, and (ii) the timescales of accumulation vary hierarchically, from early sensory areas with short processing timescales (tens to hundreds of milliseconds) to higher-order areas with long processing timescales (many seconds to minutes). In this hierarchical systems perspective, memory is not restricted to a few localized stores, but is intrinsic to information processing that unfolds throughout the brain on multiple timescales. “The present contains nothing more than the past, and what is found in the effect was already in the cause.”Henri L Bergson PMID:25980649

A BARYONIC EFFECT ON THE MERGER TIMESCALE OF GALAXY CLUSTERS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhang, Congyao; Yu, Qingjuan; Lu, Youjun, E-mail: yuqj@pku.edu.cn

2016-04-01

Accurate estimation of the merger timescales of galaxy clusters is important for understanding the cluster merger process and further understanding the formation and evolution of the large-scale structure of the universe. In this paper, we explore a baryonic effect on the merger timescale of galaxy clusters by using hydrodynamical simulations. We find that the baryons play an important role in accelerating the merger process. The merger timescale decreases upon increasing the gas fraction of galaxy clusters. For example, the merger timescale is shortened by a factor of up to 3 for merging clusters with gas fractions of 0.15, compared withmore » the timescale obtained with 0 gas fractions. The baryonic effect is significant for a wide range of merger parameters and is particularly more significant for nearly head-on mergers and high merging velocities. The baryonic effect on the merger timescale of galaxy clusters is expected to have an impact on the structure formation in the universe, such as the cluster mass function and massive substructures in galaxy clusters, and a bias of “no-gas” may exist in the results obtained from the dark matter-only cosmological simulations.« less

Extreme AGN Captured in a Low State by XMM-Newton and NuSTAR

NASA Astrophysics Data System (ADS)

Frederick, Sara; Kara, Erin; Reynolds, Christopher S.

2018-01-01

The most variable active galactic nuclei (AGN), taken together, are a compelling wellspring of interesting accretion-related phenomena and can exhibit dramatic variability in the X-ray band down to timescales of a few minutes. We present the exemplifying case study of 1H 1934-063 (z = 0.0102), a narrow-line Seyfert I (NLS1) that is among the most variable AGN ever observed with XMM-Newton. We present spectroscopic and temporal analyses of a concurrent XMM-Newton and NuSTAR 120 ks observation, during which the source exhibited a steep (factor of 1.5) plummet and subsequent full recovery of flux that we explore in detail. Combined spectral and timing results point to a dramatic change in the continuum on timescales as short as a few ks. Similar to other highly variable Seyfert 1s, this AGN is X-ray bright and displays strong reflection spectral features. We find agreement with a change in the continuum, and we rule out absorption as the cause for this dramatic variability that is observed even at NuSTAR energies. We compare measurements from detailed time-resolved spectral fitting with Fourier-based timing results to constrain coronal geometry, dynamics, and emission/absorption processes dictating the nature of this variability. We also announce the discovery of a Fe-K time lag between the hard X-ray continuum emission (1-4 keV) and relativistically-blurred reprocessing by the inner accretion flow (0.3-1 keV).

On the Outer Edges of Protoplanetary Dust Disks

NASA Astrophysics Data System (ADS)

Birnstiel, Tilman; Andrews, Sean M.

2014-01-01

The expectation that aerodynamic drag will force the solids in a gas-rich protoplanetary disk to spiral in toward the host star on short timescales is one of the fundamental problems in planet formation theory. The nominal efficiency of this radial drift process is in conflict with observations, suggesting that an empirical calibration of solid transport mechanisms in a disk is highly desirable. However, the fact that both radial drift and grain growth produce a similar particle size segregation in a disk (such that larger particles are preferentially concentrated closer to the star) makes it difficult to disentangle a clear signature of drift alone. We highlight a new approach, by showing that radial drift leaves a distinctive "fingerprint" in the dust surface density profile that is directly accessible to current observational facilities. Using an analytical framework for dust evolution, we demonstrate that the combined effects of drift and (viscous) gas drag naturally produce a sharp outer edge in the dust distribution (or, equivalently, a sharp decrease in the dust-to-gas mass ratio). This edge feature forms during the earliest phase in the evolution of disk solids, before grain growth in the outer disk has made much progress, and is preserved over longer timescales when both growth and transport effects are more substantial. The key features of these analytical models are reproduced in detailed numerical simulations, and are qualitatively consistent with recent millimeter-wave observations that find gas/dust size discrepancies and steep declines in dust continuum emission in the outer regions of protoplanetary disks.

Benthic Bioprocessing of Hydrocarbons in the Natural Deep-Sea Environment

NASA Astrophysics Data System (ADS)

MacDonald, I. R.; Bohrmann, G.; Schubotz, F.; Johansen, C.

2017-12-01

Science is accustomed to quantifying ecosystem processes that consume carbon from primary production as it drifts downward through the photic zone. Comparably efficient processes operate in reverse, as living and non-living components sequester and re-mineralize a large fraction of hydrocarbons that migrate out of traps and reservoirs to the seafloor interface. Together, they comprise a sink that prevents these hydrocarbons from escaping upward into the water column. Although quantification of the local or regional magnitude of this sink poses steep challenges, we can make progress by classifying and mapping the biological communities and geological intrusions that are generated from hydrocarbons in the deep sea. Gulf of Mexico examples discussed in this presentation extend across a broad range of depths (550, 1200, and 3200 m) and include major differences in hydrocarbon composition (from gas to liquid oil to asphaltene-dominated solids). Formation of gas hydrate is a dynamic process in each depth zone. At upper depths, gas hydrate is unstable at a timescale of months to years and serves as a substrate for microbial consortia and mussel symbiosis. At extreme depths, gas hydrate supports large and dense tubeworm colonies that conserve the material from decomposition. Timescales for biogeochemical weathering of oil and asphalts are decadal or longer, as shown by sequential alterations and changing biological colonization. Understanding these processes is crucial as we prepare for wider and deeper energy exploitation in the Gulf of Mexico and beyond.

A model for AGN variability on multiple time-scales

NASA Astrophysics Data System (ADS)

Sartori, Lia F.; Schawinski, Kevin; Trakhtenbrot, Benny; Caplar, Neven; Treister, Ezequiel; Koss, Michael J.; Urry, C. Megan; Zhang, C. E.

2018-05-01

We present a framework to link and describe active galactic nuclei (AGN) variability on a wide range of time-scales, from days to billions of years. In particular, we concentrate on the AGN variability features related to changes in black hole fuelling and accretion rate. In our framework, the variability features observed in different AGN at different time-scales may be explained as realisations of the same underlying statistical properties. In this context, we propose a model to simulate the evolution of AGN light curves with time based on the probability density function (PDF) and power spectral density (PSD) of the Eddington ratio (L/LEdd) distribution. Motivated by general galaxy population properties, we propose that the PDF may be inspired by the L/LEdd distribution function (ERDF), and that a single (or limited number of) ERDF+PSD set may explain all observed variability features. After outlining the framework and the model, we compile a set of variability measurements in terms of structure function (SF) and magnitude difference. We then combine the variability measurements on a SF plot ranging from days to Gyr. The proposed framework enables constraints on the underlying PSD and the ability to link AGN variability on different time-scales, therefore providing new insights into AGN variability and black hole growth phenomena.

Double core evolution. 7: The infall of a neutron star through the envelope of its massive star companion

NASA Technical Reports Server (NTRS)

Terman, James L.; Taam, Ronald E.; Hernquist, Lars

1995-01-01

Binary systems with properties similar to those of high-mass X-ray binaries are evolved through the common envelope phase. Three-dimensional simulations show that the timescale of the infall phase of the neutron star depends upon the evolutionary state of its massive companion. We find that tidal torques more effectively accelerate common envelope evolution for companions in their late core helium-burning stage and that the infall phase is rapid (approximately several initial orbital periods). For less evolved companions the decay of the orbit is longer; however, once the neutron star is deeply embedded within the companion's envelope the timescale for orbital decay decreases rapidly. As the neutron star encounters the high-density region surrounding the helium core of its massive companion, the rate of energy loss from the orbit increases dramatically leading to either partial or nearly total envelope ejection. The outcome of the common envelope phase depends upon the structure of the evolved companion. In particular, it is found that the entire common envelope can be ejected by the interaction of the neutron star with a red supergiant companion in binaries with orbital periods similar to those of long-period Be X-ray binaries. For orbital periods greater than or approximately equal to 0.8-2 yr (for companions of mass 12-24 solar mass) it is likely that a binary will survive the common envelope phase. For these systems, the structure of the progenitor star is characterized by a steep density gradient above the helium core, and the common envelope phase ends with a spin up of the envelope to within 50%-60% of corotation and with a slow mass outflow. The efficiency of mass ejection is found to be approximately 30%-40%. For less evolved companions, there is insufficient energy in the orbit to unbind the common envelope and only a fraction of it is ejected. Since the timescale for orbital decay is always shorter than the mass-loss timescale from the common envelope, the two cores will likely merge to form a Thorne-Zytkow object. Implications for the origin of Cyg X-3, an X-ray source consisting of a Wolf-Rayet star and a compact companion, and for the fate of the remnant binary consisting of a helium star and a neutron star are briefly discussed.

Fundamental limitations on V/STOL terminal guidance due to aircraft characteristics

NASA Technical Reports Server (NTRS)

Wolkovitch, J.; Lamont, C. W.; Lochtie, D. W.

1971-01-01

A review is given of limitations on approach flight paths of V/STOL aircraft, including limits on descent angle due to maximum drag/lift ratio. A method of calculating maximum drag/lift ratio of tilt-wing and deflected slipstream aircraft is presented. Derivatives and transfer functions for the CL-84 tilt-wing and X-22A tilt-duct aircraft are presented. For the unaugmented CL-84 in steep descents the transfer function relating descent angle to thrust contains a right-half plane zero. Using optimal control theory, it is shown that this zero causes a serious degradation in the accuracy with which steep flight paths can be followed in the presence of gusts.

Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery.

PubMed

Choy, Meng S; Li, Yang; Machado, Luciana E S F; Kunze, Micha B A; Connors, Christopher R; Wei, Xingyu; Lindorff-Larsen, Kresten; Page, Rebecca; Peti, Wolfgang

2017-02-16

Protein function originates from a cooperation of structural rigidity, dynamics at different timescales, and allostery. However, how these three pillars of protein function are integrated is still only poorly understood. Here we show how these pillars are connected in Protein Tyrosine Phosphatase 1B (PTP1B), a drug target for diabetes and cancer that catalyzes the dephosphorylation of numerous substrates in essential signaling pathways. By combining new experimental and computational data on WT-PTP1B and ≥10 PTP1B variants in multiple states, we discovered a fundamental and evolutionarily conserved CH/π switch that is critical for positioning the catalytically important WPD loop. Furthermore, our data show that PTP1B uses conformational and dynamic allostery to regulate its activity. This shows that both conformational rigidity and dynamics are essential for controlling protein activity. This connection between rigidity and dynamics at different timescales is likely a hallmark of all enzyme function. Copyright © 2017 Elsevier Inc. All rights reserved.

Chimeric β-Lactamases: Global Conservation of Parental Function and Fast Time-Scale Dynamics with Increased Slow Motions

PubMed Central

Clouthier, Christopher M.; Morin, Sébastien; Gobeil, Sophie M. C.; Doucet, Nicolas; Blanchet, Jonathan; Nguyen, Elisabeth; Gagné, Stéphane M.; Pelletier, Joelle N.

2012-01-01

Enzyme engineering has been facilitated by recombination of close homologues, followed by functional screening. In one such effort, chimeras of two class-A β-lactamases – TEM-1 and PSE-4 – were created according to structure-guided protein recombination and selected for their capacity to promote bacterial proliferation in the presence of ampicillin (Voigt et al., Nat. Struct. Biol. 2002 9:553). To provide a more detailed assessment of the effects of protein recombination on the structure and function of the resulting chimeric enzymes, we characterized a series of functional TEM-1/PSE-4 chimeras possessing between 17 and 92 substitutions relative to TEM-1 β-lactamase. Circular dichroism and thermal scanning fluorimetry revealed that the chimeras were generally well folded. Despite harbouring important sequence variation relative to either of the two ‘parental’ β-lactamases, the chimeric β-lactamases displayed substrate recognition spectra and reactivity similar to their most closely-related parent. To gain further insight into the changes induced by chimerization, the chimera with 17 substitutions was investigated by NMR spin relaxation. While high order was conserved on the ps-ns timescale, a hallmark of class A β-lactamases, evidence of additional slow motions on the µs-ms timescale was extracted from model-free calculations. This is consistent with the greater number of resonances that could not be assigned in this chimera relative to the parental β-lactamases, and is consistent with this well-folded and functional chimeric β-lactamase displaying increased slow time-scale motions. PMID:23284969

Does Late Miocene Exhumation Along the Western Slope of the Colorado Rockies Reflect Differential Rock Uplift?

NASA Astrophysics Data System (ADS)

Rosenberg, R. H.; Kirby, E.; Aslan, A.; Karlstrom, K. E.; Heizler, M. T.; Kelley, S. A.; Piotraschke, R. E.; Furlong, K. P.

2011-12-01

It is increasingly recognized that dynamic effects associated with changes in mantle flow and buoyancy can influence the evolution of surface topography. In the Rocky Mountain province of the western United States, recent seismic deployments reveal intriguing correlations between anomalies in the velocity structure of the upper mantle and regions of high topography. Here, we investigate whether regional correlations between upper-mantle structure and topography are associated with the history of Late Cenozoic fluvial incision and exhumation. Major tributaries of the upper Colorado River, including the Gunnison and Dolores Rivers, which drain high topography in central and western Colorado overlie upper mantle with slow seismic wave velocities; these drainages exhibit relatively steep longitudinal profiles (normalized for differences in drainage area and discharge) and are associated with ~1000-1500 m of incision over the past 10 Ma. In contrast, tributaries of the Green River that drain the western slope in northern Colorado (White, Yampa, and Little Snake Rivers) overlie mantle of progressively higher seismic wave velocities. River profiles in northern Colorado are two to three times less steep along reaches with comparable bedrock lithologies. New Ar39/Ar40 ages on ~11 Ma basalt flows capping the Tertiary Brown's Park Formation in northern Colorado indicate that the magnitude of exhumation along these profiles ranges from ~400 - 600 m over this time interval. The correspondence of steep river profiles in regions of greater incision implies that the fluvial systems are dynamically adjusting to an external forcing. New constraints on the exhumation history of the upper Colorado River from apatite fission track ages in boreholes near Rifle, Colorado are best explained by an onset of exhumation at ca. 8-10 Ma. Thus, relative base level fall associated with development of Grand Canyon (ca. 6-5 Ma) does not explain the regional onset of incision along the western slope of the Rockies. Additionally, new cosmogenic burial ages from fan-terrace complexes near Rifle, Colorado show that Colorado River incision occurred at similar rates over both 10 Ma and 2 Ma timescales. Fluvial incision in response to relative base level fall or to changes in regional climate cannot easily explain the history of differential incision along the western slope. Given the correspondence of steep channels, large magnitude incision and regions of low seismic velocity mantle, we suggest that differential rock uplift, driven, in part, by differences in the buoyancy and/or convective flow of the mantle beneath western Colorado is the likely driver for Neogene incision.

An Investigation of the Optical Microvariability of the Blazar PG 0735+178

NASA Astrophysics Data System (ADS)

McFarland, J. P.; Miller, H. R.; Carini, M. T.; Jang, M.; Noble, J. C.

2003-05-01

The blazar PG 0735+178 was monitored for more than 20 nights for microvariability on multiple timescales. We present this data which shows variations of amplitude several hundredths to several tenths of a magnitude on timescales of hours to days. The object also has exhibited variations with an amplitude as large as 2 magnitudes on the timescale of years. This microvariability will be investigated as a function of outburst and quiescent states of the object over the course of these timescales. These variations place severe limits on the size of the emitting region, and provide constraints for the physical processes responsible for these variations. JPM and HRM are grateful for support of a grant from the Research Corporation and the PEGA-RPE program at Georgia State University.

A sensitivity study of fast outlet glaciers to short timescale cyclical perturbations

NASA Astrophysics Data System (ADS)

Aykutlug, E.; Dupont, T. K.

2015-01-01

The dynamic response of outlet glaciers on short (annual to decadal) timescales is affected by various external forcings, such as basal or oceanic conditions. Understanding the sensitivity of the dynamic response to such forcings can help assess more accurate ice volume projections. In this work, we investigate the spatiotemporal sensitivity of outlet glaciers to fast cyclical forcings using a one-dimensional depth and width-averaged heuristic model. Our results indicate that even on such short timescales, nonlinearities in ice dynamics may lead to an asymmetric response, despite the forcing functions being symmetric around each reference value. Results also show that such short-timescale effects become more pronounced as glaciers become closer to flotation. While being qualitatively similar for both downsloping and upsloping bed geometries, the results indicate higher sensitivity for upsloping ("West Antarctica-like") beds. The range in asymmetric response for different configurations motivate parameterizing or including short-timescale effects in models while investigating the dynamic behavior of outlet glaciers.

What Can Modern River Profiles Tell Us about Orogenic Processes and Orogen Evolution?

NASA Astrophysics Data System (ADS)

Whipple, K. X.

2008-12-01

Numerous lines of evidence from theory, numerical simulations, and physical experiments suggest that orogen evolution is strongly coupled to atmospheric processes through the interrelationships among climate, topography, and erosion rate. In terms of orogenic processes and orogen evolution, these relationships are most important at the regional scale (mean topographic gradient, mean relief above surrounding plains) largely because crustal deformation is most sensitive to erosional unloading averaged over sufficiently long wavelengths. For this reason, and because above moderate erosion rates (> 0.2 mm/yr) hillslope form becomes decoupled from erosion rate, attention has focused on the river network, and even on particularly large rivers. We now have data that demonstrates a monotonic relationship between erosion rate and the channel steepness index (slope normalized for differences in drainage area) in a variety of field settings. Consequently, study of modern river profiles can yield useful information on recent and on-going patterns of rock uplift. It is not yet possible, however, to quantitatively isolate expected climatic and lithologic influences on this relationship. A combination of field studies and theoretical analyses are beginning to reveal the timescale of landscape response, and thus the topographic memory of past conditions. At orogen scale, river profile response to a change in rock uplift rate is on the order of 1-10 Myr. Because of these long response times, the modern profiles of large rivers and their major tributaries can potentially preserve an interpretable record of rock uplift rates since the Miocene and are insensitive to short-term climatic fluctuations. Only significant increases in rock uplift rate, however, are likely to leave a clear topographic signature. Strategies have been developed to differentiate between temporal and spatial (tectonic, climatic, or lithologic) influences on channel profile form, especially where spatially distributed data on recent incision rates is available. A more difficult question is one of cause and effect. Only in some circumstances is it possible to determine whether rivers are steep in response to localized rock uplift or whether localized rock uplift occurs in response to rapidly incising steep rivers.

Sediment transport dynamics in steep, tropical volcanic catchments

NASA Astrophysics Data System (ADS)

Birkel, Christian; Solano Rivera, Vanessa; Granados Bolaños, Sebastian; Brenes Cambronero, Liz; Sánchez Murillo, Ricardo; Geris, Josie

2017-04-01

How volcanic landforms in tropical mountainous regions are eroded, and how eroded materials move through these mostly steep landscapes from the headwaters to affect sediment fluxes are critical to water resources management in their downstream rivers. Volcanic landscapes are of particular importance because of the short timescales (< years) over which they transform. Owing to volcanism and seismic activity, landslides and other mass movements frequently occur. These processes are amplified by high intensity precipitation inputs resulting in significant, but natural runoff, erosion and sediment fluxes. Sediment transport is also directly linked to carbon and solute export. However, knowledge on the sediment sources and transport dynamics in the humid tropics remains limited and their fluxes largely unquantified. In order to increase our understanding of the dominant erosion and sediment transport dynamics in humid tropical volcanic landscapes, we conducted an extensive monitoring effort in a pristine and protected (biological reserve Alberto Manuel Brenes, ReBAMB) tropical forest catchment (3.2 km2), located in the Central Volcanic Cordillera of Costa Rica (Figure 1A). Typical for tropical volcanic and montane regions, deeply incised V-form headwaters (Figure 1B) deliver the majority of water (>70%) and sediments to downstream rivers. At the catchment outlet (Figure 1C) of the San Lorencito stream, we established high temporal resolution (5min) water quantity and sediment monitoring (turbidity). We also surveyed the river network on various occasions to characterize fluvial geomorphology including material properties. We could show that the rainfall-runoff-sediment relationships and their characteristic hysteresis patterns are directly linked to variations in the climatic input (storm intensity and duration) and the size, form and mineralogy of the transported material. Such a relationship allowed us to gain the following insights: (i) periodic landslides contribute significant volumes of material (> 100m3 per year) to the stream network, (ii) rainfall events that exceed a threshold of around 30mm/h rain intensity activate superficial flow pathways with associated mobilization of sediments (laminar erosion). However, the erosion processes are spatially very heterogeneous and mostly linked to finer material properties of the soils that mostly developed on more highly weathered bedrock. (iii) extreme events (return period > 50 years) mainly erode the streambed and banks cutting deeper into the bedrock and re-distribute massive amounts of material in the form of removed old alluvial deposits and new deposits created elsewhere, (iv) recovery after such extreme events in the form of fine material transport even during low intensity rainfall towards pre-event rainfall intensity thresholds takes only about two to three months. We conclude that the study catchment geomorphologically represents a low-resistance, but highly resilient catchment that quickly recovers after the impact of extreme rainfall-runoff events. The latter was indicated by a different pre and post-event hysteretic pattern of sediment-runoff dynamics and associated different material properties. The combined use of high-temporal resolution monitoring with spatially distributed surveys provided new insights into the fluvial geomorphology of steep, volcanic headwater catchments with potential to establish more complete sediment budgets and time-scales of land-forming processes of such highly dynamic environments in the humid tropics.

Explaining the apparent impenetrable barrier to ultra-relativistic electrons in the outer Van Allen belt.

PubMed

Ozeke, Louis G; Mann, Ian R; Murphy, Kyle R; Degeling, Alex W; Claudepierre, Seth G; Spence, Harlan E

2018-05-10

Recent observations have shown the existence of an apparent impenetrable barrier at the inner edge of the ultra-relativistic outer electron radiation belt. This apparent impenetrable barrier has not been explained. However, recent studies have suggested that fast loss, such as associated with scattering into the atmosphere from man-made very-low frequency transmissions, is required to limit the Earthward extent of the belt. Here we show that the steep flux gradient at the implied barrier location is instead explained as a natural consequence of ultra-low frequency wave radial diffusion. Contrary to earlier claims, sharp boundaries in fast loss processes at the barrier are not needed. Moreover, we show that penetration to the barrier can occur on the timescale of days rather than years as previously reported, with the Earthward extent of the belt being limited by the finite duration of strong solar wind driving, which can encompass only a single geomagnetic storm.

Early time evolution of a chemically produced electron depletion

NASA Technical Reports Server (NTRS)

Scales, W. A.; Bernhardt, P. A.; Ganguli, G.

1995-01-01

The early time evolution of an ionospheric electron depletion produced by a radially expanding electron attachment chemical release is studied with a two-dimensional simulation model. The model includes electron attachment chemistry, incorporates fluid electrons, particle ions and neutrals, and considers the evolution in a plane perpendicular to the geomagnetic field for a low beta plasma. Timescales considered are of the order of or less than the cyclotron period of the negative ions that result as a by-product of the electron attacment reaction. This corresponds to time periods of tenths of seconds during recent experiemts. Simulation results show that a highly sheared azimuthal electron flow velocity develops in the radially expanding depletion boundary. This sheared electron flow velocity and the steep density gradients in the boundary give rise to small-scale irregulatities in the form of electron density cavities and spikes. The nonlinear evolution of these irregularities results in trapping and ultimately turbulent heating of the negative ions.

Triple junction orogeny: tectonic evolution of the Pan-African Northern Damara Belt, Namibia

NASA Astrophysics Data System (ADS)

Lehmann, Jérémie; Saalmann, Kerstin; Naydenov, Kalin V.; Milani, Lorenzo; Charlesworth, Eugene G.; Kinnaird, Judith A.; Frei, Dirk; Kramers, Jan D.; Zwingmann, Horst

2014-05-01

Trench-trench-trench triple junctions are generally geometrically and kinematically unstable and therefore can result at the latest stages in complicated collisional orogenic belts. In such geodynamic sites, mechanism and timescale of deformations that accommodate convergence and final assembly of the three colliding continental plates are poorly studied. In western Namibia, Pan-African convergence of three cratonic blocks led to pene-contemporaneous closure of two highly oblique oceanic domains and formation of the triple junction Damara Orogen where the NE-striking Damara Belt abuts to the west against the NNW-striking Kaoko-Gariep Belt. Detailed description of structures and microstructures associated with remote sensing analysis, and dating of individual deformation events by means of K-Ar, Ar-Ar (micas) and U-Pb (zircon) isotopic studies from the Northern Damara Belt provide robust constraints on the tectonic evolution of this palaeo-triple junction orogeny. There, passive margin sequences of the Neoproterozoic ocean were polydeformed and polymetamorphosed to the biotite zone of the greenschist facies to up to granulite facies and anatexis towards the southern migmatitic core of the Central Damara Belt. Subtle relict structures and fold pattern analyses reveal the existence of an early D1 N-S shortening event, tentatively dated between ~635 Ma and ~580 Ma using published data. D1 structures were almost obliterated by pervasive and major D2 E-W coaxial shortening, related to the closure of the Kaoko-Gariep oceanic domain and subsequent formation of the NNW-striking Kaoko-Gariep Belt to the west of the study area. Early, km-scale D1 E-W trending steep folds were refolded during this D2 event, producing either Type I or Type II fold interference patterns visible from space. The D2 E-W convergence could have lasted until ~533 Ma based on published and new U-Pb ages. The final D3 NW-SE convergence in the northernmost Damara Belt produced a NE-striking deformation front in weak metasedimentary rocks during SE-directed indentation of a rigid Paleoproterozoic basement. In the central and southern parts of the Northern Damara Belt, D3 is mostly expressed by km-scale local Type I fold interference patterns formed by the refolding of D2 upright synclines as well as bending around a steep axis of the D2 refolded folds and steep S2 multilayer. In the western part however, where the two orthogonal trends of the Damara and Kaoko-Gariep Belts meet, D3 is described in literature as sinistral shearing along reactivated steep S2 planes that is associated with steep-hinge folds with steep NE-striking axial planes. Our new ages indicate that D3 lasted from ~513 Ma to ~460 Ma throughout the entire Northern Damara Belt. These results document for the first time a regional-scale early Pan-African N-S shortening event of uncertain geotectonic significance. They furthermore indicate that two competing orthogonal collisional systems have contributed in resolving instabilities at the triple orogenic junction over a period in the order of ~100 m.y. and could therefore account for the assembly of the three cratons. The E-W convergence was preponderant in strength and pre-dates the NW-SE one, the latter being associated with localized sinistral shearing along the Kaoko Belt interface in the westernmost Northern Damara Belt.

A Dynamical System Approach Explaining the Process of Development by Introducing Different Time-scales.

PubMed

Hashemi Kamangar, Somayeh Sadat; Moradimanesh, Zahra; Mokhtari, Setareh; Bakouie, Fatemeh

2018-06-11

A developmental process can be described as changes through time within a complex dynamic system. The self-organized changes and emergent behaviour during development can be described and modeled as a dynamical system. We propose a dynamical system approach to answer the main question in human cognitive development i.e. the changes during development happens continuously or in discontinuous stages. Within this approach there is a concept; the size of time scales, which can be used to address the aforementioned question. We introduce a framework, by considering the concept of time-scale, in which "fast" and "slow" is defined by the size of time-scales. According to our suggested model, the overall pattern of development can be seen as one continuous function, with different time-scales in different time intervals.

Observing the Fast X-ray Spectral Variability of NLS1 1H1934-063 with XMM-Newton and NuSTAR

NASA Astrophysics Data System (ADS)

Frederick, Sara; Kara, Erin; Reynolds, Christopher S.

2017-08-01

The most variable active galactic nuclei (AGN), taken together, are a compelling wellspring of interesting accretion-related phenomena. They can exhibit dramatic variability in the X-ray band on a range of timescales down to a few minutes. We present the exemplifying case study of 1H1934-063 (z = 0.0102), a narrow-line Seyfert I (NLS1) that is among the most variable AGN ever observed with XMM-Newton. We present spectral and temporal analyses of a concurrent XMM-Newton and NuSTAR observation taken in 2015 and lasting 120 ks, during which the source exhibited a steep (factor of 1.5) plummet and subsequent full recovery of flux that we explore in detail here. Combined spectral and timing results point to a dramatic change in the continuum on timescales as short as a few ks. Similar to other highly variable Seyfert 1s, this AGN is quite X-ray bright and displays strong reflection spectral features. We find agreement with a change in the continuum, and we rule out absorption as the cause for this dramatic variability observed even at NuSTAR energies. We compare detailed time-resolved spectral fitting with Fourier-based timing analysis in order to constrain coronal geometry, dynamics, and emission/absorption processes dictating the nature of this variability. We also announce the discovery of a Fe-K time lag between the hard X-ray continuum emission (1 - 4 keV) and its relativistically-blurred reflection off the inner accretion flow (0.3 - 1 keV).

The neural processing of hierarchical structure in music and speech at different timescales.

PubMed

Farbood, Morwaread M; Heeger, David J; Marcus, Gary; Hasson, Uri; Lerner, Yulia

2015-01-01

Music, like speech, is a complex auditory signal that contains structures at multiple timescales, and as such is a potentially powerful entry point into the question of how the brain integrates complex streams of information. Using an experimental design modeled after previous studies that used scrambled versions of a spoken story (Lerner et al., 2011) and a silent movie (Hasson et al., 2008), we investigate whether listeners perceive hierarchical structure in music beyond short (~6 s) time windows and whether there is cortical overlap between music and language processing at multiple timescales. Experienced pianists were presented with an extended musical excerpt scrambled at multiple timescales-by measure, phrase, and section-while measuring brain activity with functional magnetic resonance imaging (fMRI). The reliability of evoked activity, as quantified by inter-subject correlation of the fMRI responses, was measured. We found that response reliability depended systematically on musical structure coherence, revealing a topographically organized hierarchy of processing timescales. Early auditory areas (at the bottom of the hierarchy) responded reliably in all conditions. For brain areas at the top of the hierarchy, the original (unscrambled) excerpt evoked more reliable responses than any of the scrambled excerpts, indicating that these brain areas process long-timescale musical structures, on the order of minutes. The topography of processing timescales was analogous with that reported previously for speech, but the timescale gradients for music and speech overlapped with one another only partially, suggesting that temporally analogous structures-words/measures, sentences/musical phrases, paragraph/sections-are processed separately.

Pressure fluctuations and time scales in turbulent channel flow

NASA Astrophysics Data System (ADS)

Septham, Kamthon; Morrison, Jonathan; Diwan, Sourabh

2015-11-01

Pressure fluctuations in turbulent channel flow subjected to globally stabilising linear feedback control are investigated at Reτ = 400 . The passivity-based control is adopted and explained by the conservative characteristics of the nonlinear terms contributing to the Reynolds-Orr equation (Sharma et al. Phys. Fluids 2011). The linear control operates via vU' ; the maximum forcing is located at y+ ~ 20 , corresponding to the location of the maximum in the mean-square pressure gradient. The responses of the rapid (linear) and slow (nonlinear) pressure fluctuations to the linear control are investigated using the Green's function representations. It demonstrates that the linear control operates via the linear source terms of the Poisson equation for pressure fluctuations. Landahl's timescales of the minimal flow unit (MFU) in turbulent channel flow are examined at y+ = 20 . It shows that the timescales of MFU agree well with the theoretical values proposed by Landahl (1993). Therefore, the effectiveness of the linear control to attenuate wall turbulence is explained by Landahl's theory for timescales, in that the control proceeds via the shear interaction timescale which is significantly shorter than both the nonlinear and viscous timescales.

Continuous and Delayed Photohemolysis Sensitized With Methylene Blue and Iron Oxide Nanoparticles (Fe3O4)

NASA Astrophysics Data System (ADS)

AL-Akhras, M.-Ali; Aljarrah, Khaled; Albiss, Borhan; Alhaji Bala, Abba

2015-10-01

This research present the sensitization of methylene blue (MB), as a potential photodynamic therapy photo sensitizer which showed phototoxicity for many tumor cells in vitro incorporated with iron oxide nanoparticles (Fe3O4, IO-NP), which offer magnificent interaction both inside and outside the surface of biomolecules together with red blood cells (RBC's) with significant change in hemolysis process. The study investigated the sensitization of continuous photohemolysis (CPH) for MB and MB with IO-NP, delayed photohemolysis (DPH) at different irradiation temperature (Tirr). The photohemolysis rate for CPH at room temperature has a power dependence of 0.39 ± 0.05 with relative of steepness of 1.25 ± 0.02 and for different concentration of MB and power dependent of 0.15 ± 0.03 with relative steepness of 1.34 ± 0.01 for different MB and IO-NP. Logistic and Gompertz functions were applied as appropriate mathematical models to fit the collected experimental data for CPH and DPH respectively, and to calculate fractional photohemolysis rate with minimum errors. The Logistic function parameter; α, the hemolysis rate, increases with increasing concentrations of MB and decreases with increasing IO-NP concentrations in the presence of 6 μg/ml of MB. The parameter β the time required to reduce the maximum number of RBCs to one half of its value, decreases with increasing MB concentration and increases with increasing IO-NP concentrations in the presence of 6 pg/ml of MB. In DPH at different Tirr, the Gompertz parameter; a, fractional hemolysis ratio, is independent of temperature in both case MB and MB plus IO-NP, while the parameter; b, rate of fractional hemolysis change, increases with increasing Tirr, in both case MB and MB plus IO-NP. The apparent activation energy of colloid-osmotic hemolysis is 9.47±0.01 Kcal/mol with relative steepness of 1.31 ± 0.05 for different MB and 6.06±0.03 Kcal/mol with relative steepness of 1.41 ± 0.09 for MB with iron oxide. Our results suggest that Logistic equation is the best fit for the CPH and Gompertz function for the DPH. Both models predict also that the relative steepness is independent of the light dose, sensitizer and IO-NP concentrations.

Modelling Of Anticipated Damage Ratio On Breakwaters Using Fuzzy Logic

NASA Astrophysics Data System (ADS)

Mercan, D. E.; Yagci, O.; Kabdasli, S.

2003-04-01

In breakwater design the determination of armour unit weight is especially important in terms of the structure's life. In a typical experimental breakwater stability study, different wave series composed of different wave heights; wave period and wave steepness characteristics are applied in order to investigate performance the structure. Using a classical approach, a regression equation is generated for damage ratio as a function of characteristic wave height. The parameters wave period and wave steepness are not considered. In this study, differing from the classical approach using a fuzzy logic, a relationship between damage ratio as a function of mean wave period (T_m), wave steepness (H_s/L_m) and significant wave height (H_s) was further generated. The system's inputs were mean wave period (T_m), wave steepness (H_s/L_m) and significant wave height (H_s). For fuzzification all input variables were divided into three fuzzy subsets, their membership functions were defined using method developed by Mandani (Mandani, 1974) and the rules were written. While for defuzzification the centroid method was used. In order to calibrate and test the generated models an experimental study was conducted. The experiments were performed in a wave flume (24 m long, 1.0 m wide and 1.0 m high) using 20 different irregular wave series (P-M spectrum). Throughout the study, the water depth was 0.6 m and the breakwater cross-sectional slope was 1V/2H. In the armour layer, a type of artificial armour unit known as antifer cubes were used. The results of the established fuzzy logic model and regression equation model was compared with experimental data and it was determined that the established fuzzy logic model gave a more accurate prediction of the damage ratio on this type of breakwater. References Mandani, E.H., "Application of Fuzzy Algorithms for Control of Simple Dynamic Plant", Proc. IEE, vol. 121, no. 12, December 1974.

Radio continuum observations of local star-forming galaxies using the Caltech Continuum Backend on the green bank telescope

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rabidoux, Katie; Pisano, D. J.; Kepley, Amanda A.

2014-01-01

We observed radio continuum emission in 27 local (D < 70 Mpc) star-forming galaxies with the Robert C. Byrd Green Bank Telescope between 26 GHz and 40 GHz using the Caltech Continuum Backend. We obtained detections for 22 of these galaxies at all four sub-bands and four more marginal detections by taking the average flux across the entire bandwidth. This is the first detection (full or marginal) at these frequencies for 22 of these galaxies. We fit spectral energy distributions (SEDs) for all of the four sub-band detections. For 14 of the galaxies, SEDs were best fit by a combinationmore » of thermal free-free and nonthermal synchrotron components. Eight galaxies with four sub-band detections had steep spectra that were only fit by a single nonthermal component. Using these fits, we calculated supernova rates, total number of equivalent O stars, and star formation rates within each ∼23'' beam. For unresolved galaxies, these physical properties characterize the galaxies' recent star formation on a global scale. We confirm that the radio-far-infrared correlation holds for the unresolved galaxies' total 33 GHz flux regardless of their thermal fractions, though the scatter on this correlation is larger than that at 1.4 GHz. In addition, we found that for the unresolved galaxies, there is an inverse relationship between the ratio of 33 GHz flux to total far-infrared flux and the steepness of the galaxy's spectral index between 1.4 GHz and 33 GHz. This relationship could be an indicator of the timescale of the observed episode of star formation.« less

Delay, probability, and social discounting in a public goods game.

PubMed

Jones, Bryan A; Rachlin, Howard

2009-01-01

A human social discount function measures the value to a person of a reward to another person at a given social distance. Just as delay discounting is a hyperbolic function of delay, and probability discounting is a hyperbolic function of odds-against, social discounting is a hyperbolic function of social distance. Experiment 1 obtained individual social, delay, and probability discount functions for a hypothetical $75 reward; participants also indicated how much of an initial $100 endowment they would contribute to a common investment in a public good. Steepness of discounting correlated, across participants, among all three discount dimensions. However, only social and probability discounting were correlated with the public-good contribution; high public-good contributors were more altruistic and also less risk averse than low contributors. Experiment 2 obtained social discount functions with hypothetical $75 rewards and delay discount functions with hypothetical $1,000 rewards, as well as public-good contributions. The results replicated those of Experiment 1; steepness of the two forms of discounting correlated with each other across participants but only social discounting correlated with the public-good contribution. Most participants in Experiment 2 predicted that the average contribution would be lower than their own contribution.

Analytical analysis of the temporal asymmetry between seawater intrusion and retreat

NASA Astrophysics Data System (ADS)

Rathore, Saubhagya Singh; Zhao, Yue; Lu, Chunhui; Luo, Jian

2018-01-01

The quantification of timescales associated with the movement of the seawater-freshwater interface is useful for developing effective management strategies for controlling seawater intrusion (SWI). In this study, for the first time, we derive an explicit analytical solution for the timescales of SWI and seawater retreat (SWR) in a confined, homogeneous coastal aquifer system under the quasi-steady assumption, based on a classical sharp-interface solution for approximating freshwater outflow rates into the sea. The flow continuity and hydrostatic equilibrium across the interface are identified as two primary mechanisms governing timescales of the interface movement driven by an abrupt change in discharge rates or hydraulic heads at the inland boundary. Through theoretical analysis, we quantified the dependence of interface-movement timescales on porosity, hydraulic conductivity, aquifer thickness, aquifer length, density ratio, and boundary conditions. Predictions from the analytical solution closely agreed with those from numerical simulations. In addition, we define a temporal asymmetry index (the ratio of the SWI timescale to the SWR timescale) to represent the resilience of the coastal aquifer in response to SWI. The developed analytical solutions provide a simple tool for the quick assessment of SWI and SWR timescales and reveal that the temporal asymmetry between SWI and SWR mainly relies on the initial and final values of the freshwater flux at the inland boundary, and is weakly affected by aquifer parameters. Furthermore, we theoretically examined the log-linearity relationship between the timescale and the freshwater flux at the inland boundary, and found that the relationship may be approximated by two linear functions with a slope of -2 and -1 for large changes at the boundary flux for SWI and SWR, respectively.

Bed load transport over a broad range of timescales: Determination of three regimes of fluctuations

NASA Astrophysics Data System (ADS)

Ma, Hongbo; Heyman, Joris; Fu, Xudong; Mettra, Francois; Ancey, Christophe; Parker, Gary

2014-12-01

This paper describes the relationship between the statistics of bed load transport flux and the timescale over which it is sampled. A stochastic formulation is developed for the probability distribution function of bed load transport flux, based on the Ancey et al. (2008) theory. An analytical solution for the variance of bed load transport flux over differing sampling timescales is presented. The solution demonstrates that the timescale dependence of the variance of bed load transport flux reduces to a three-regime relation demarcated by an intermittency timescale (tI) and a memory timescale (tc). As the sampling timescale increases, this variance passes through an intermittent stage (≪tI), an invariant stage (tI < t < tc), and a memoryless stage (≫ tc). We propose a dimensionless number (Ra) to represent the relative strength of fluctuation, which provides a common ground for comparison of fluctuation strength among different experiments, as well as different sampling timescales for each experiment. Our analysis indicates that correlated motion and the discrete nature of bed load particles are responsible for this three-regime behavior. We use the data from three experiments with high temporal resolution of bed load transport flux to validate the proposed three-regime behavior. The theoretical solution for the variance agrees well with all three sets of experimental data. Our findings contribute to the understanding of the observed fluctuations of bed load transport flux over monosize/multiple-size grain beds, to the characterization of an inherent connection between short-term measurements and long-term statistics, and to the design of appropriate sampling strategies for bed load transport flux.

Dynamic hyporheic exchange at intermediate timescales: testing the relative importance of evapotranspiration and flood pulses

USGS Publications Warehouse

Larsen, Laurel G.; Harvey, Judson W.; Maglio, Morgan M.

2014-01-01

Hyporheic fluxes influence ecological processes across a continuum of timescales. However, few studies have been able to characterize hyporheic fluxes and residence time distributions (RTDs) over timescales of days to years, during which evapotranspiration (ET) and seasonal flood pulses create unsteady forcing. Here we present a data-driven, particle-tracking piston model that characterizes hyporheic fluxes and RTDs based on measured vertical head differences. We used the model to test the relative influence of ET and seasonal flood pulses in the Everglades (FL, USA), in a manner applicable to other low-energy floodplains or broad, shallow streams. We found that over the multiyear timescale, flood pulses that drive relatively deep (∼1 m) flow paths had the dominant influence on hyporheic fluxes and residence times but that ET effects were discernible at shorter timescales (weeks to months) as a break in RTDs. Cumulative RTDs on either side of the break were generally well represented by lognormal functions, except for when ET was strong and none of the standard distributions applied to the shorter timescale. At the monthly timescale, ET increased hyporheic fluxes by 1–2 orders of magnitude; it also decreased 6 year mean residence times by 53–87%. Long, slow flow paths driven by flood pulses increased 6 year hyporheic fluxes by another 1–2 orders of magnitude, to a level comparable to that induced over the short term by shear flow in streams. Results suggest that models of intermediate-timescale processes should include at least two-storage zones with different RTDs, and that supporting field data collection occur over 3–4 years.

STARD6 on steroids: solution structure, multiple timescale backbone dynamics and ligand binding mechanism

NASA Astrophysics Data System (ADS)

Létourneau, Danny; Bédard, Mikaël; Cabana, Jérôme; Lefebvre, Andrée; Lehoux, Jean-Guy; Lavigne, Pierre

2016-06-01

START domain proteins are conserved α/β helix-grip fold that play a role in the non-vesicular and intracellular transport of lipids and sterols. The mechanism and conformational changes permitting the entry of the ligand into their buried binding sites is not well understood. Moreover, their functions and the identification of cognate ligands is still an active area of research. Here, we report the solution structure of STARD6 and the characterization of its backbone dynamics on multiple time-scales through 15N spin-relaxation and amide exchange studies. We reveal for the first time the presence of concerted fluctuations in the Ω1 loop and the C-terminal helix on the microsecond-millisecond time-scale that allows for the opening of the binding site and ligand entry. We also report that STARD6 binds specifically testosterone. Our work represents a milestone for the study of ligand binding mechanism by other START domains and the elucidation of the biological function of STARD6.

Ecosystem functioning is enveloped by hydrometeorological variability.

PubMed

Pappas, Christoforos; Mahecha, Miguel D; Frank, David C; Babst, Flurin; Koutsoyiannis, Demetris

2017-09-01

Terrestrial ecosystem processes, and the associated vegetation carbon dynamics, respond differently to hydrometeorological variability across timescales, and so does our scientific understanding of the underlying mechanisms. Long-term variability of the terrestrial carbon cycle is not yet well constrained and the resulting climate-biosphere feedbacks are highly uncertain. Here we present a comprehensive overview of hydrometeorological and ecosystem variability from hourly to decadal timescales integrating multiple in situ and remote-sensing datasets characterizing extra-tropical forest sites. We find that ecosystem variability at all sites is confined within a hydrometeorological envelope across sites and timescales. Furthermore, ecosystem variability demonstrates long-term persistence, highlighting ecological memory and slow ecosystem recovery rates after disturbances. However, simulation results with state-of-the-art process-based models do not reflect this long-term persistent behaviour in ecosystem functioning. Accordingly, we develop a cross-time-scale stochastic framework that captures hydrometeorological and ecosystem variability. Our analysis offers a perspective for terrestrial ecosystem modelling and paves the way for new model-data integration opportunities in Earth system sciences.

Experimental evidence of the self-similarity and long-range correlations of the edge fluctuations in HT-6M tokamak

NASA Astrophysics Data System (ADS)

Wang, Wen-hao; Yu, Chang-xuan; Wen, Yi-zhi; Xu, Yu-hong; Ling, Bi-li; Gong, Xian-zu; Liu, Bao-hua; Wan, Bao-nian

2001-02-01

For a better understanding of long timescale transport dynamics, the rescaled range analysis techniques, the autocorrelation function (ACF) and the probability distribution function (PDF) are used to investigate long-range dependences in edge plasma fluctuations in an HT-6M tokamak. The results reveal the self-similar characters of the electrostatic fluctuations with self-similarity parameters (Hurst exponent) ranging from 0.64 to 0.79, taking into consideration the Er×B rotation-sheared effect. Fluctuation ACFs of both the ion saturation current and the floating potential, as well as PDF of the turbulence-induced particle flux, have two distinct timescales. One corresponds to the decorrelation timescale of local fluctuations (µs) and the other lasts to the order of the confinement time (ms). All these experimental results suggest that some of the mechanisms of the underlying turbulence are consistent with plasma transport as characterized by self-organized criticality (SOC).

Climate Response of Tree Radial Growth at Different Timescales in the Qinling Mountains.

PubMed

Sun, Changfeng; Liu, Yu

2016-01-01

The analysis of the tree radial growth response to climate is crucial for dendroclimatological research. However, the response relationships between tree-ring indices and climatic factors at different timescales are not yet clear. In this study, the tree-ring width of Huashan pine (Pinus armandii) from Huashan in the Qinling Mountains, north-central China, was used to explore the response differences of tree growth to climatic factors at daily, pentad (5 days), dekad (10 days) and monthly timescales. Correlation function and linear regression analysis were applied in this paper. The tree-ring width showed a more sensitive response to daily and pentad climatic factors. With the timescale decreasing, the absolute value of the maximum correlation coefficient between the tree-ring data and precipitation increases as well as temperature (mean, minimum and maximum temperature). Compared to the other three timescales, pentad was more suitable for analysing the response of tree growth to climate. Relative to the monthly climate data, the association between the tree-ring data and the pentad climate data was more remarkable and accurate, and the reconstruction function based on the pentad climate was also more reliable and stable. We found that the major climatic factor limiting Huashan pine growth was the precipitation of pentads 20-35 (from April 6 to June 24) rather than the well-known April-June precipitation. The pentad was also proved to be a better timescale for analysing the climate and tree growth in the western and eastern Qinling Mountains. The formation of the earlywood density of Chinese pine (Pinus tabulaeformis) from Shimenshan in western Qinling was mainly affected by the maximum temperature of pentads 28-32 (from May 16 to June 9). The maximum temperature of pentads 28-33 (from May 16 to June 14) was the major factor affecting the ring width of Chinese pine from Shirenshan in eastern Qinling.

Time evolution of giant molecular cloud mass functions with cloud-cloud collisions and gas resurrection in various environments

NASA Astrophysics Data System (ADS)

Kobayashi, M. I. N.; Inutsuka, S.; Kobayashi, H.; Hasegawa, K.

We formulate the evolution equation for the giant molecular cloud (GMC) mass functions including self-growth of GMCs through the thermal instability, self-dispersal due to massive stars born in GMCs, cloud-cloud collisions (CCCs), and gas resurrection that replenishes the minimum-mass GMC population. The computed time evolutions obtained from this formulation suggest that the slope of GMC mass function in the mass range <105.5 Mȯ is governed by the ratio of GMC formation timescale to its dispersal timescale, and that the CCC process modifies only the massive end of the mass function. Our results also suggest that most of the dispersed gas contributes to the mass growth of pre-existing GMCs in arm regions whereas less than 60 per cent contributes in inter-arm regions.

Ultra-Wideband Radar Transient Detection using Time-Frequency and Wavelet Transforms.

DTIC Science & Technology

1992-12-01

if p==2, mesh(flipud(abs(spdatamatrix).A2)) end 2. Wigner - Ville Distribution function P = wvd (data,winlenstep,begintheendp) % Filename: wvd.m % Title...short time Fourier transform (STFT), the Instantaneous Power Spectrum and the Wigner - Ville distribution , and time-scale methods, such as the a trous...such as the short time Fourier transform (STFT), the Instantaneous Power Spectrum and the Wigner - Ville distribution [1], and time-scale methods, such

Event Detection and Sub-state Discovery from Bio-molecular Simulations Using Higher-Order Statistics: Application To Enzyme Adenylate Kinase

PubMed Central

Ramanathan, Arvind; Savol, Andrej J.; Agarwal, Pratul K.; Chennubhotla, Chakra S.

2012-01-01

Biomolecular simulations at milli-second and longer timescales can provide vital insights into functional mechanisms. Since post-simulation analyses of such large trajectory data-sets can be a limiting factor in obtaining biological insights, there is an emerging need to identify key dynamical events and relating these events to the biological function online, that is, as simulations are progressing. Recently, we have introduced a novel computational technique, quasi-anharmonic analysis (QAA) (PLoS One 6(1): e15827), for partitioning the conformational landscape into a hierarchy of functionally relevant sub-states. The unique capabilities of QAA are enabled by exploiting anharmonicity in the form of fourth-order statistics for characterizing atomic fluctuations. In this paper, we extend QAA for analyzing long time-scale simulations online. In particular, we present HOST4MD - a higher-order statistical toolbox for molecular dynamics simulations, which (1) identifies key dynamical events as simulations are in progress, (2) explores potential sub-states and (3) identifies conformational transitions that enable the protein to access those sub-states. We demonstrate HOST4MD on micro-second time-scale simulations of the enzyme adenylate kinase in its apo state. HOST4MD identifies several conformational events in these simulations, revealing how the intrinsic coupling between the three sub-domains (LID, CORE and NMP) changes during the simulations. Further, it also identifies an inherent asymmetry in the opening/closing of the two binding sites. We anticipate HOST4MD will provide a powerful and extensible framework for detecting biophysically relevant conformational coordinates from long time-scale simulations. PMID:22733562

The neural processing of hierarchical structure in music and speech at different timescales

PubMed Central

Farbood, Morwaread M.; Heeger, David J.; Marcus, Gary; Hasson, Uri; Lerner, Yulia

2015-01-01

Music, like speech, is a complex auditory signal that contains structures at multiple timescales, and as such is a potentially powerful entry point into the question of how the brain integrates complex streams of information. Using an experimental design modeled after previous studies that used scrambled versions of a spoken story (Lerner et al., 2011) and a silent movie (Hasson et al., 2008), we investigate whether listeners perceive hierarchical structure in music beyond short (~6 s) time windows and whether there is cortical overlap between music and language processing at multiple timescales. Experienced pianists were presented with an extended musical excerpt scrambled at multiple timescales—by measure, phrase, and section—while measuring brain activity with functional magnetic resonance imaging (fMRI). The reliability of evoked activity, as quantified by inter-subject correlation of the fMRI responses, was measured. We found that response reliability depended systematically on musical structure coherence, revealing a topographically organized hierarchy of processing timescales. Early auditory areas (at the bottom of the hierarchy) responded reliably in all conditions. For brain areas at the top of the hierarchy, the original (unscrambled) excerpt evoked more reliable responses than any of the scrambled excerpts, indicating that these brain areas process long-timescale musical structures, on the order of minutes. The topography of processing timescales was analogous with that reported previously for speech, but the timescale gradients for music and speech overlapped with one another only partially, suggesting that temporally analogous structures—words/measures, sentences/musical phrases, paragraph/sections—are processed separately. PMID:26029037

New methods to constrain the radio transient rate: results from a survey of four fields with LOFAR.

PubMed

Carbone, D; van der Horst, A J; Wijers, R A M J; Swinbank, J D; Rowlinson, A; Broderick, J W; Cendes, Y N; Stewart, A J; Bell, M E; Breton, R P; Corbel, S; Eislöffel, J; Fender, R P; Grießmeier, J-M; Hessels, J W T; Jonker, P; Kramer, M; Law, C J; Miller-Jones, J C A; Pietka, M; Scheers, L H A; Stappers, B W; van Leeuwen, J; Wijnands, R; Wise, M; Zarka, P

2016-07-01

We report on the results of a search for radio transients between 115 and 190 MHz with the LOw-Frequency ARray (LOFAR). Four fields have been monitored with cadences between 15 min and several months. A total of 151 images were obtained, giving a total survey area of 2275 deg 2 . We analysed our data using standard LOFAR tools and searched for radio transients using the LOFAR Transients Pipeline. No credible radio transient candidate has been detected; however, we are able to set upper limits on the surface density of radio transient sources at low radio frequencies. We also show that low-frequency radio surveys are more sensitive to steep-spectrum coherent transient sources than GHz radio surveys. We used two new statistical methods to determine the upper limits on the transient surface density. One is free of assumptions on the flux distribution of the sources, while the other assumes a power-law distribution in flux and sets more stringent constraints on the transient surface density. Both of these methods provide better constraints than the approach used in previous works. The best value for the upper limit we can set for the transient surface density, using the method assuming a power-law flux distribution, is 1.3 × 10 -3  deg -2 for transients brighter than 0.3 Jy with a time-scale of 15 min, at a frequency of 150 MHz. We also calculated for the first time upper limits for the transient surface density for transients of different time-scales. We find that the results can differ by orders of magnitude from previously reported, simplified estimates.

AGN Heating in Simulated Cool-core Clusters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Yuan; Ruszkowski, Mateusz; Bryan, Greg L., E-mail: yuanlium@umich.edu

We analyze heating and cooling processes in an idealized simulation of a cool-core cluster, where momentum-driven AGN feedback balances radiative cooling in a time-averaged sense. We find that, on average, energy dissipation via shock waves is almost an order of magnitude higher than via turbulence. Most of the shock waves in the simulation are very weak shocks with Mach numbers smaller than 1.5, but the stronger shocks, although rare, dissipate energy more effectively. We find that shock dissipation is a steep function of radius, with most of the energy dissipated within 30 kpc, more spatially concentrated than radiative cooling loss.more » However, adiabatic processes and mixing (of post-shock materials and the surrounding gas) are able to redistribute the heat throughout the core. A considerable fraction of the AGN energy also escapes the core region. The cluster goes through cycles of AGN outbursts accompanied by periods of enhanced precipitation and star formation, over gigayear timescales. The cluster core is under-heated at the end of each cycle, but over-heated at the peak of the AGN outburst. During the heating-dominant phase, turbulent dissipation alone is often able to balance radiative cooling at every radius but, when this is occurs, shock waves inevitably dissipate even more energy. Our simulation explains why some clusters, such as Abell 2029, are cooling dominated, while in some other clusters, such as Perseus, various heating mechanisms including shock heating, turbulent dissipation and bubble mixing can all individually balance cooling, and together, over-heat the core.« less

Properties of Particle Size Distribution from Milled White Nixtamalized Corn Kernels as a Function of Steeping Time

PubMed Central

Fernández-Muñoz, J. L.; Zapata-Torrez, M.; Márquez-Herrera, A.; Sánchez-Sinencio, F.; Mendoza-Álvarez, J. G.; Meléndez-Lira, M.; Zelaya-Ángel, O.

2016-01-01

This paper focuses on the particle size distribution (PSD) changes during nixtamalized corn kernels (NCK) as a function of the steeping time (ST). The process to obtain powder or corn flour from NCK was as follows: (i) the NCK with different STs were wet-milled in a stone mill, (ii) dehydrated by a Flash type dryer, and (iii) pulverized with a hammer mill and sieved with a 20 mesh. The powder was characterized by measuring the PSD percentage, calcium percentage (CP), peak viscosity at 90°C (PV), and crystallinity percentage (CP). The PSD of the powder as a function of ST was determined by sieving in Ro-TAP equipment. By sieving, five fractions of powder were obtained employing meshes 30, 40, 60, 80, and 100. The final weight of the PSD obtained from the sieving process follows a Gaussian profile with the maximum corresponding to the average particle obtained with mesh 60. The calcium percentage as a function of ST follows a behavior similar to the weight of the PSD. The study of crystallinity versus the mesh number shows that it decreases for smaller mesh number. A similar behavior is observed as steeping time increases, except around ST = 8 h where the gelatinization of starch is observed. The trend of increasing viscosity values of the powder samples occurs when increasing ST and decreasing particle size. The ST significantly changes the crystallinity and viscosity values of the powder and, in both cases, a minimum value is observed in the region 7–9 h. The experimental results show that the viscosity increases (decreases) if the particle size decreases (increases). PMID:27375921

The Sloan Digital Sky Survey Reverberation Mapping Project: Ensemble Spectroscopic Variability of Quasar Broad Emission Lines

NASA Astrophysics Data System (ADS)

Sun, Mouyuan; Trump, Jonathan R.; Shen, Yue; Brandt, W. N.; Dawson, Kyle; Denney, Kelly D.; Hall, Patrick B.; Ho, Luis C.; Horne, Keith; Jiang, Linhua; Richards, Gordon T.; Schneider, Donald P.; Bizyaev, Dmitry; Kinemuchi, Karen; Oravetz, Daniel; Pan, Kaike; Simmons, Audrey

2015-09-01

We explore the variability of quasars in the Mg ii and {{H}}β broad emission lines and ultraviolet/optical continuum emission using the Sloan Digital Sky Survey Reverberation Mapping project (SDSS-RM). This is the largest spectroscopic study of quasar variability to date: our study includes 29 spectroscopic epochs from SDSS-RM over 6 months, containing 357 quasars with Mg ii and 41 quasars with {{H}}β . On longer timescales, the study is also supplemented with two-epoch data from SDSS-I/II. The SDSS-I/II data include an additional 2854 quasars with Mg ii and 572 quasars with {{H}}β . The Mg ii emission line is significantly variable ({{Δ }}f/f∼ 10% on ∼100-day timescales), a necessary prerequisite for its use for reverberation mapping studies. The data also confirm that continuum variability increases with timescale and decreases with luminosity, and the continuum light curves are consistent with a damped random-walk model on rest-frame timescales of ≳ 5 days. We compare the emission-line and continuum variability to investigate the structure of the broad-line region. Broad-line variability shows a shallower increase with timescale compared to the continuum emission, demonstrating that the broad-line transfer function is not a δ-function. {{H}}β is more variable than Mg ii (roughly by a factor of ∼1.5), suggesting different excitation mechanisms, optical depths and/or geometrical configuration for each emission line. The ensemble spectroscopic variability measurements enabled by the SDSS-RM project have important consequences for future studies of reverberation mapping and black hole mass estimation of 1\\lt z\\lt 2 quasars.

Long-term variability of T Tauri stars using WASP

NASA Astrophysics Data System (ADS)

Rigon, Laura; Scholz, Alexander; Anderson, David; West, Richard

2017-03-01

We present a reference study of the long-term optical variability of young stars using data from the WASP project. Our primary sample is a group of well-studied classical T Tauri stars (CTTSs), mostly in Taurus-Auriga. WASP light curves cover time-scales of up to 7 yr and typically contain 10 000-30 000 data points. We quantify the variability as a function of time-scale using the time-dependent standard deviation 'pooled sigma'. We find that the overwhelming majority of CTTSs have a low-level variability with σ < 0.3 mag dominated by time-scales of a few weeks, consistent with rotational modulation. Thus, for most young stars, monitoring over a month is sufficient to constrain the total amount of variability over time-scales of up to a decade. The fraction of stars with a strong optical variability (σ > 0.3 mag) is 21 per cent in our sample and 21 per cent in an unbiased control sample. An even smaller fraction (13 per cent in our sample, 6 per cent in the control) show evidence for an increase in variability amplitude as a function of time-scale from weeks to months or years. The presence of long-term variability correlates with the spectral slope at 3-5 μm, which is an indicator of inner disc geometry, and with the U-B band slope, which is an accretion diagnostics. This shows that the long-term variations in CTTSs are predominantly driven by processes in the inner disc and in the accretion zone. Four of the stars with long-term variations show periods of 20-60 d, significantly longer than the rotation periods and stable over months to years. One possible explanation is cyclic changes in the interaction between the disc and the stellar magnetic field.

A hierarchy of time-scales and the brain.

PubMed

Kiebel, Stefan J; Daunizeau, Jean; Friston, Karl J

2008-11-01

In this paper, we suggest that cortical anatomy recapitulates the temporal hierarchy that is inherent in the dynamics of environmental states. Many aspects of brain function can be understood in terms of a hierarchy of temporal scales at which representations of the environment evolve. The lowest level of this hierarchy corresponds to fast fluctuations associated with sensory processing, whereas the highest levels encode slow contextual changes in the environment, under which faster representations unfold. First, we describe a mathematical model that exploits the temporal structure of fast sensory input to track the slower trajectories of their underlying causes. This model of sensory encoding or perceptual inference establishes a proof of concept that slowly changing neuronal states can encode the paths or trajectories of faster sensory states. We then review empirical evidence that suggests that a temporal hierarchy is recapitulated in the macroscopic organization of the cortex. This anatomic-temporal hierarchy provides a comprehensive framework for understanding cortical function: the specific time-scale that engages a cortical area can be inferred by its location along a rostro-caudal gradient, which reflects the anatomical distance from primary sensory areas. This is most evident in the prefrontal cortex, where complex functions can be explained as operations on representations of the environment that change slowly. The framework provides predictions about, and principled constraints on, cortical structure-function relationships, which can be tested by manipulating the time-scales of sensory input.

An Evaluation of the Sniffer Global Optimization Algorithm Using Standard Test Functions

NASA Astrophysics Data System (ADS)

Butler, Roger A. R.; Slaminka, Edward E.

1992-03-01

The performance of Sniffer—a new global optimization algorithm—is compared with that of Simulated Annealing. Using the number of function evaluations as a measure of efficiency, the new algorithm is shown to be significantly better at finding the global minimum of seven standard test functions. Several of the test functions used have many local minima and very steep walls surrounding the global minimum. Such functions are intended to thwart global minimization algorithms.

Multiscale molecular dynamics simulations of rotary motor proteins.

PubMed

Ekimoto, Toru; Ikeguchi, Mitsunori

2018-04-01

Protein functions require specific structures frequently coupled with conformational changes. The scale of the structural dynamics of proteins spans from the atomic to the molecular level. Theoretically, all-atom molecular dynamics (MD) simulation is a powerful tool to investigate protein dynamics because the MD simulation is capable of capturing conformational changes obeying the intrinsically structural features. However, to study long-timescale dynamics, efficient sampling techniques and coarse-grained (CG) approaches coupled with all-atom MD simulations, termed multiscale MD simulations, are required to overcome the timescale limitation in all-atom MD simulations. Here, we review two examples of rotary motor proteins examined using free energy landscape (FEL) analysis and CG-MD simulations. In the FEL analysis, FEL is calculated as a function of reaction coordinates, and the long-timescale dynamics corresponding to conformational changes is described as transitions on the FEL surface. Another approach is the utilization of the CG model, in which the CG parameters are tuned using the fluctuation matching methodology with all-atom MD simulations. The long-timespan dynamics is then elucidated straightforwardly by using CG-MD simulations.

Optimal traits of plant hydraulic capacitance as an adaptation to hydroclimatic variability

NASA Astrophysics Data System (ADS)

Hartzell, S. R.; Bartlett, M. S., Jr.; Porporato, A. M.

2016-12-01

Hydraulic capacitance allows plants to uptake and store water when it is abundant. This stored water is utilized during periods of water stress, decreasing tissue damage and increasing carbon assimilation. By providing a more consistent and readily accessible water supply, it buffers water stress variability across daily and seasonal timescales. The rate of plant water storage and withdrawal varies widely between plant species and is principally governed by several plant hydraulic parameters, principally the hydraulic capacitance, the total water storage capacity, and the conductance between xylem and water storage tissue. The timescale of the plant response to changes in environmental conditions may be related to the timescale of relevant environmental variability. For example, the Baobab tree (Adansonia), which grows in an environment with very strong seasonal rainfall variability, has a relatively long timescale of hydraulic response, while an evergreen tree such as Pinus taeda, which mainly contends with daily and inter-rainfall moisture variability, has a much shorter timescale of hydraulic response. Here a model of hydraulic capacitance is coupled to a resistance model of soil-plant-atmosphere continuum. We force this model with stochastic rainfall and examine plant responses to moisture variability at various timescales. Optimal plant hydraulic properties are examined as a function of mean soil moisture (daily variability), mean period between rainfall events (inter-rainfall variability), and seasonal rainfall variability, and the relative importance of each type of variability in shaping plant water use strategies is assessed. Results are compared to typical hydraulic parameters of plants growing under specific environmental conditions. Values of hydraulic traits which optimize carbon assimilation and water use efficiency are found; these values are dependent on mean environmental conditions as well as the timescale of environmental variability.

Perceptually relevant speech tracking in auditory and motor cortex reflects distinct linguistic features

PubMed Central

Gross, Joachim; Kayser, Christoph

2018-01-01

During online speech processing, our brain tracks the acoustic fluctuations in speech at different timescales. Previous research has focused on generic timescales (for example, delta or theta bands) that are assumed to map onto linguistic features such as prosody or syllables. However, given the high intersubject variability in speaking patterns, such a generic association between the timescales of brain activity and speech properties can be ambiguous. Here, we analyse speech tracking in source-localised magnetoencephalographic data by directly focusing on timescales extracted from statistical regularities in our speech material. This revealed widespread significant tracking at the timescales of phrases (0.6–1.3 Hz), words (1.8–3 Hz), syllables (2.8–4.8 Hz), and phonemes (8–12.4 Hz). Importantly, when examining its perceptual relevance, we found stronger tracking for correctly comprehended trials in the left premotor (PM) cortex at the phrasal scale as well as in left middle temporal cortex at the word scale. Control analyses using generic bands confirmed that these effects were specific to the speech regularities in our stimuli. Furthermore, we found that the phase at the phrasal timescale coupled to power at beta frequency (13–30 Hz) in motor areas. This cross-frequency coupling presumably reflects top-down temporal prediction in ongoing speech perception. Together, our results reveal specific functional and perceptually relevant roles of distinct tracking and cross-frequency processes along the auditory–motor pathway. PMID:29529019

The Timescale-dependent Color Variability of Quasars Viewed with /GALEX

NASA Astrophysics Data System (ADS)

Zhu, Fei-Fan; Wang, Jun-Xian; Cai, Zhen-Yi; Sun, Yu-Han

2016-11-01

In a recent work by Sun et al., the color variation of quasars, namely the bluer-when-brighter trend, was found to be timescale dependent using the SDSS g/r band light curves in Stripe 82. Such timescale dependence, I.e., bluer variation at shorter timescales, supports the thermal fluctuation origin of the UV/optical variation in quasars, and can be modeled well with the inhomogeneous accretion disk model. In this paper, we extend the study to much shorter wavelengths in the rest frame (down to extreme UV) using GALaxy Evolution eXplorer (GALEX) photometric data of quasars collected in two ultraviolet bands (near-UV and far-UV). We develop Monte Carlo simulations to correct for possible biases due to the considerably larger photometric uncertainties in the GALEX light curves (particularly in the far-UV, compared with the SDSS g/r bands), which otherwise could produce artificial results. We securely confirm the previously discovered timescale dependence of the color variability with independent data sets and at shorter wavelengths. We further find that the slope of the correlation between the amplitude of the color variation and timescale appears even steeper than predicted by the inhomogeneous disk model, which assumes that disk fluctuations follow a damped random walk (DRW) process. The much flatter structure function observed in the far-UV compared with that at longer wavelengths implies deviation from the DRW process in the inner disk, where rest-frame extreme UV radiation is produced.

Landslide triggering by rain infiltration

USGS Publications Warehouse

Iverson, Richard M.

2000-01-01

Landsliding in response to rainfall involves physical processes that operate on disparate timescales. Relationships between these timescales guide development of a mathematical model that uses reduced forms of Richards equation to evaluate effects of rainfall infiltration on landslide occurrence, timing, depth, and acceleration in diverse situations. The longest pertinent timescale is A/D0, where D0 is the maximum hydraulic diffusivity of the soil and A is the catchment area that potentially affects groundwater pressures at a prospective landslide slip surface location with areal coordinates x, y and depth H. Times greater than A/D0 are necessary for establishment of steady background water pressures that develop at (x, y, H) in response to rainfall averaged over periods that commonly range from days to many decades. These steady groundwater pressures influence the propensity for landsliding at (x, y, H), but they do not trigger slope failure. Failure results from rainfall over a typically shorter timescale H2/D0 associated with transient pore pressure transmission during and following storms. Commonly, this timescale ranges from minutes to months. The shortest timescale affecting landslide responses to rainfall is √(H/g), where g is the magnitude of gravitational acceleration. Postfailure landslide motion occurs on this timescale, which indicates that the thinnest landslides accelerate most quickly if all other factors are constant. Effects of hydrologic processes on landslide processes across these diverse timescales are encapsulated by a response function, R(t*) = √(t*/π) exp (-1/t*) - erfc (1/√t*), which depends only on normalized time, t*. Use of R(t*) in conjunction with topographic data, rainfall intensity and duration information, an infinite-slope failure criterion, and Newton's second law predicts the timing, depth, and acceleration of rainfall-triggered landslides. Data from contrasting landslides that exhibit rapid, shallow motion and slow, deep-seated motion corroborate these predictions.

Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.

PubMed

Ramanathan, Arvind; Savol, Andrej J; Agarwal, Pratul K; Chennubhotla, Chakra S

2012-11-01

Biomolecular simulations at millisecond and longer time-scales can provide vital insights into functional mechanisms. Because post-simulation analyses of such large trajectory datasets can be a limiting factor in obtaining biological insights, there is an emerging need to identify key dynamical events and relating these events to the biological function online, that is, as simulations are progressing. Recently, we have introduced a novel computational technique, quasi-anharmonic analysis (QAA) (Ramanathan et al., PLoS One 2011;6:e15827), for partitioning the conformational landscape into a hierarchy of functionally relevant sub-states. The unique capabilities of QAA are enabled by exploiting anharmonicity in the form of fourth-order statistics for characterizing atomic fluctuations. In this article, we extend QAA for analyzing long time-scale simulations online. In particular, we present HOST4MD--a higher-order statistical toolbox for molecular dynamics simulations, which (1) identifies key dynamical events as simulations are in progress, (2) explores potential sub-states, and (3) identifies conformational transitions that enable the protein to access those sub-states. We demonstrate HOST4MD on microsecond timescale simulations of the enzyme adenylate kinase in its apo state. HOST4MD identifies several conformational events in these simulations, revealing how the intrinsic coupling between the three subdomains (LID, CORE, and NMP) changes during the simulations. Further, it also identifies an inherent asymmetry in the opening/closing of the two binding sites. We anticipate that HOST4MD will provide a powerful and extensible framework for detecting biophysically relevant conformational coordinates from long time-scale simulations. Copyright © 2012 Wiley Periodicals, Inc.

Precipitation characteristics of CAM5 physics at mesoscale resolution during MC3E and the impact of convective timescale choice

DOE PAGES

Gustafson, William I.; Ma, Po-Lun; Singh, Balwinder

2014-12-17

The physics suite of the Community Atmosphere Model version 5 (CAM5) has recently been implemented in the Weather Research and Forecasting (WRF) model to explore the behavior of the parameterization suite at high resolution and in the more controlled setting of a limited area model. The initial paper documenting this capability characterized the behavior for northern high latitude conditions. This present paper characterizes the precipitation characteristics for continental, mid-latitude, springtime conditions during the Midlatitude Continental Convective Clouds Experiment (MC3E) over the central United States. This period exhibited a range of convective conditions from those driven strongly by large-scale synoptic regimesmore » to more locally driven convection. The study focuses on the precipitation behavior at 32 km grid spacing to better anticipate how the physics will behave in the global model when used at similar grid spacing in the coming years. Importantly, one change to the Zhang-McFarlane deep convective parameterization when implemented in WRF was to make the convective timescale parameter an explicit function of grid spacing. This study examines the sensitivity of the precipitation to the default value of the convective timescale in WRF, which is 600 seconds for 32 km grid spacing, to the value of 3600 seconds used for 2 degree grid spacing in CAM5. For comparison, an infinite convective timescale is also used. The results show that the 600 second timescale gives the most accurate precipitation over the central United States in terms of rain amount. However, this setting has the worst precipitation diurnal cycle, with the convection too tightly linked to the daytime surface heating. Longer timescales greatly improve the diurnal cycle but result in less precipitation and produce a low bias. An analysis of rain rates shows the accurate precipitation amount with the shorter timescale is assembled from an over abundance of drizzle combined with too little heavy rain events. With longer timescales one can improve the distribution, particularly for the extreme rain rates. Ultimately, without changing other aspects of the physics, one must choose between accurate diurnal timing and rain amount when choosing an appropriate convective timescale.« less

Long-term neural and physiological phenotyping of a single human

PubMed Central

Poldrack, Russell A.; Laumann, Timothy O.; Koyejo, Oluwasanmi; Gregory, Brenda; Hover, Ashleigh; Chen, Mei-Yen; Gorgolewski, Krzysztof J.; Luci, Jeffrey; Joo, Sung Jun; Boyd, Ryan L.; Hunicke-Smith, Scott; Simpson, Zack Booth; Caven, Thomas; Sochat, Vanessa; Shine, James M.; Gordon, Evan; Snyder, Abraham Z.; Adeyemo, Babatunde; Petersen, Steven E.; Glahn, David C.; Reese Mckay, D.; Curran, Joanne E.; Göring, Harald H. H.; Carless, Melanie A.; Blangero, John; Dougherty, Robert; Leemans, Alexander; Handwerker, Daniel A.; Frick, Laurie; Marcotte, Edward M.; Mumford, Jeanette A.

2015-01-01

Psychiatric disorders are characterized by major fluctuations in psychological function over the course of weeks and months, but the dynamic characteristics of brain function over this timescale in healthy individuals are unknown. Here, as a proof of concept to address this question, we present the MyConnectome project. An intensive phenome-wide assessment of a single human was performed over a period of 18 months, including functional and structural brain connectivity using magnetic resonance imaging, psychological function and physical health, gene expression and metabolomics. A reproducible analysis workflow is provided, along with open access to the data and an online browser for results. We demonstrate dynamic changes in brain connectivity over the timescales of days to months, and relations between brain connectivity, gene expression and metabolites. This resource can serve as a testbed to study the joint dynamics of human brain and metabolic function over time, an approach that is critical for the development of precision medicine strategies for brain disorders. PMID:26648521

Generalized Green's function molecular dynamics for canonical ensemble simulations

NASA Astrophysics Data System (ADS)

Coluci, V. R.; Dantas, S. O.; Tewary, V. K.

2018-05-01

The need of small integration time steps (˜1 fs) in conventional molecular dynamics simulations is an important issue that inhibits the study of physical, chemical, and biological systems in real timescales. Additionally, to simulate those systems in contact with a thermal bath, thermostating techniques are usually applied. In this work, we generalize the Green's function molecular dynamics technique to allow simulations within the canonical ensemble. By applying this technique to one-dimensional systems, we were able to correctly describe important thermodynamic properties such as the temperature fluctuations, the temperature distribution, and the velocity autocorrelation function. We show that the proposed technique also allows the use of time steps one order of magnitude larger than those typically used in conventional molecular dynamics simulations. We expect that this technique can be used in long-timescale molecular dynamics simulations.

New analytical solutions for chemical evolution models: characterizing the population of star-forming and passive galaxies

NASA Astrophysics Data System (ADS)

Spitoni, E.; Vincenzo, F.; Matteucci, F.

2017-03-01

Context. Analytical models of chemical evolution, including inflow and outflow of gas, are important tools for studying how the metal content in galaxies evolves as a function of time. Aims: We present new analytical solutions for the evolution of the gas mass, total mass, and metallicity of a galactic system when a decaying exponential infall rate of gas and galactic winds are assumed. We apply our model to characterize a sample of local star-forming and passive galaxies from the Sloan Digital Sky Survey data, with the aim of reproducing their observed mass-metallicity relation. Methods: We derived how the two populations of star-forming and passive galaxies differ in their particular distribution of ages, formation timescales, infall masses, and mass loading factors. Results: We find that the local passive galaxies are, on average, older and assembled on shorter typical timescales than the local star-forming galaxies; on the other hand, the star-forming galaxies with higher masses generally show older ages and longer typical formation timescales compared than star-forming galaxies with lower masses. The local star-forming galaxies experience stronger galactic winds than the passive galaxy population. Exploring the effect of assuming different initial mass functions in our model, we show that to reproduce the observed mass-metallicity relation, stronger winds are requested if the initial mass function is top-heavy. Finally, our analytical models predict the assumed sample of local galaxies to lie on a tight surface in the 3D space defined by stellar metallicity, star formation rate, and stellar mass, in agreement with the well-known fundamental relation from adopting gas-phase metallicity. Conclusions: By using a new analytical model of chemical evolution, we characterize an ensemble of SDSS galaxies in terms of their infall timescales, infall masses, and mass loading factors. Local passive galaxies are, on average, older and assembled on shorter typical timescales than the local star-forming galaxies. Moreover, the local star-forming galaxies show stronger galactic winds than the passive galaxy population. Finally, we find that the fundamental relation between metallicity, mass, and star formation rate for these local galaxies is still valid when adopting the average galaxy stellar metallicity.

Development of a digital guidance and control law for steep approach automatic landings using modern control techniques

NASA Technical Reports Server (NTRS)

Halyo, N.

1979-01-01

The development of a digital automatic control law for a small jet transport to perform a steep final approach in automatic landings is reported along with the development of a steady-state Kalman filter used to provide smooth estimates to the control law. The control law performs the functions of localizer and glides capture, localizer and glideslope track, decrab, and place. The control law uses the microwave landing system position data, and aircraft body-mounted accelerators, attitude and attitude rate information. The results obtained from a digital simulation of the aircraft dynamics, wind conditions, and sensor noises using the control law and filter developed are described.

Conformational responses to changes in the state of ionization of titrable groups in proteins

NASA Astrophysics Data System (ADS)

Richman, Daniel Eric

Electrostatic energy links the structural properties of proteins with some of their important biological functions, including catalysis, energy transduction, and binding and recognition. Accurate calculation of electrostatic energy is essential for predicting and for analyzing function from structure. All proteins have many ionizable residues at the protein-water interface. These groups tend to have ionization equilibria (pK a values) shifted slightly relative to their values in water. In contrast, groups buried in the hydrophobic interior usually have highly anomalous p Ka values. These shifts are what structure-based calculations have to reproduce to allow examination of contributions from electrostatics to stability, solubility and interactions of proteins. Electrostatic energies are challenging to calculate accurately because proteins are heterogeneous dielectric materials. Any individual ionizable group can experience very different local environments with different dielectric properties. The studies in this thesis examine the hypothesis that proteins reorganize concomitant with changes in their state of ionization. It appears that the pKa value measured experimentally reflects the average of pKa values experienced in the different electrostatic environments corresponding to different conformational microstates. Current computational models fail to sample conformational reorganization of the backbone correctly. Staphyloccocal nuclease (SNase) was used as a model protein in nuclear magnetic resonance (NMR) spectroscopy studies to characterize the conformational rearrangements of the protein coupled to changes in the ionization state of titrable groups. One set of experiments tests the hypothesis that proton binding to surface Asp and Glu side chains drives local unfolding by stabilizing less-native, more water-solvated conformations in which the side chains have normalized pKa values. Increased backbone flexibility in the ps-ns timescale, hydrogen bond (H-bond) breaking on at least the mus timescale, and segmental unfolding were detected near titrating groups as pH decreased into the acidic range. The study identified local structural features and stabilities that modulate the magnitude of electrostatic effects. The data demonstrate that computational approaches to pK a calculations for surface groups must account for local fluctuations spanning a wide range of timescales. A comparative NMR spectroscopy study with the L25K and L125K variants of SNase, each with a Lys residue buried in the hydrophobic interior of the protein, determined locations, timescales, and amplitudes of backbone conformational reorganization coupled with ionization of the buried Lys residues. The L25K protein exhibited an ensemble of local fluctuations of the beta barrel in the hundreds of mus timescale and an ensemble of subglobally unfolded beta-barrel states in the hundreds of ms timescale with strong pH dependence. The L125K protein exhibited fluctuations of the helix around site 125 in the mus timescale, with negligible pH dependence. These data illustrate the diverse timescales and local structural properties of conformational reorganization coupled to ionization of buried groups, and the challenge to structure-based electrostatics calculations, which must capture these long-timescale processes.

Modeled effects of climate change and plant invasion on watershed function across a steep tropical rainfall gradient

Treesearch

Ayron M. Strauch; Christian P. Giardina; Richard A. MacKenzie; Chris Heider; Tom W. Giambelluca; Ed Salminen; Gregory L. Bruland

2017-01-01

Climate change is anticipated to affect freshwater resources, but baseline data on the functioning of tropical watersheds is lacking, limiting efforts that seek to predict how watershed processes, water supply, and streamflow respond to anticipated changes in climate and vegetation change, and to management. To address this data gap, we applied the distributed...

Mechanism of cassava tuber cell wall weakening by dilute sodium hydroxide steeping.

PubMed

Odoch, Martin; Buys, Elna M; Taylor, John R N

2017-08-01

Steeping of cassava root pieces in 0.75% NaOH in combination with wet milling was investigated to determine whether and how dilute NaOH modifies cassava cell walls. Gas chromatography data of cell wall constituent sugar composition and Fourier transform infrared (FTIR) data showed that NaOH steeping reduced the level of pectin in cassava cell walls. FTIR and wide-angle X-ray scattering spectroscopy also indicated that NaOH steeping combined with fine milling slightly reduced cellulose crystallinity. Scanning electron microscopy showed that NaOH steeping produced micropores in the cell walls and light microscopy revealed that NaOH steeping increased disaggregation of parenchyma cells. Steeping of ground cassava in NaOH resulted in a 12% decrease in large residue particles and approx. 4% greater starch yield with wet milling. Therefore dilute NaOH steeping can improve the effectiveness of wet milling in disintegrating cell walls through solubilisation of pectin, thereby reduced cell wall strength. Copyright © 2017 Elsevier Ltd. All rights reserved.

Steep Decay Phase Shaped by the Curvature Effect. II. Spectral Evolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lin, Da-Bin; Mu, Hui-Jun; Lu, Rui-Jing

We derive a simple analytical formula to describe the evolution of spectral index β in the steep decay phase shaped by the curvature effect with the assumption that the spectral parameters and Lorentz factor of the jet shell are the same for different latitudes. Here, the value of β is estimated in the 0.3−10 keV energy band. For a spherical thin shell with a cutoff power-law (CPL) intrinsic radiation spectrum, the spectral evolution can be read as a linear function of observer time. For the situation with the Band function intrinsic radiation spectrum, the spectral evolution may be complex. Ifmore » the observed break energy of the radiation spectrum is larger than 10 keV, the spectral evolution is the same as that shaped by jet shells with a CPL spectrum. If the observed break energy is less than 0.3 keV, the value of β would be a constant. For others, the spectral evolution can be approximated as a logarithmal function of the observer time in general.« less

Dyadic Affective Flexibility and Emotional Inertia in Relation to Youth Psychopathology: An Integrated Model at Two Timescales.

PubMed

Mancini, Kathryn J; Luebbe, Aaron M

2016-06-01

The current review examines characteristics of temporal affective functioning at both the individual and dyadic level. Specifically, the review examines the following three research questions: (1) How are dyadic affective flexibility and emotional inertia operationalized, and are they related to youth psychopathology? (2) How are dyadic affective flexibility and emotional inertia related, and does this relation occur at micro- and meso-timescales? and (3) How do these constructs combine to predict clinical outcomes? Using the Flex3 model of socioemotional flexibility as a frame, the current study proposes that dyadic affective flexibility and emotional inertia are bidirectionally related at micro- and meso-timescales, which yields psychopathological symptoms for youth. Specific future directions for examining individual, dyadic, and cultural characteristics that may influence relations between these constructs and psychopathology are also discussed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kay, Jeffrey J.; Park, Samuel; Kohl, Ian Thomas

In this work, shock-induced reactions in high explosives and their chemical mechanisms were investigated using state-of-the-art experimental and theoretical techniques. Experimentally, ultrafast shock interrogation (USI, an ultrafast interferometry technique) and ultrafast absorption spectroscopy were used to interrogate shock compression and initiation of reaction on the picosecond timescale. The experiments yielded important new data that appear to indicate reaction of high explosives on the timescale of tens of picoseconds in response to shock compression, potentially setting new upper limits on the timescale of reaction. Theoretically, chemical mechanisms of shock-induced reactions were investigated using density functional theory. The calculations generated important insightsmore » regarding the ability of several hypothesized mechanisms to account for shock-induced reactions in explosive materials. The results of this work constitute significant advances in our understanding of the fundamental chemical reaction mechanisms that control explosive sensitivity and initiation of detonation.« less

Concurrent temporal channels for auditory processing: Oscillatory neural entrainment reveals segregation of function at different scales

PubMed Central

Tian, Xing; Rowland, Jess; Poeppel, David

2017-01-01

Natural sounds convey perceptually relevant information over multiple timescales, and the necessary extraction of multi-timescale information requires the auditory system to work over distinct ranges. The simplest hypothesis suggests that temporal modulations are encoded in an equivalent manner within a reasonable intermediate range. We show that the human auditory system selectively and preferentially tracks acoustic dynamics concurrently at 2 timescales corresponding to the neurophysiological theta band (4–7 Hz) and gamma band ranges (31–45 Hz) but, contrary to expectation, not at the timescale corresponding to alpha (8–12 Hz), which has also been found to be related to auditory perception. Listeners heard synthetic acoustic stimuli with temporally modulated structures at 3 timescales (approximately 190-, approximately 100-, and approximately 30-ms modulation periods) and identified the stimuli while undergoing magnetoencephalography recording. There was strong intertrial phase coherence in the theta band for stimuli of all modulation rates and in the gamma band for stimuli with corresponding modulation rates. The alpha band did not respond in a similar manner. Classification analyses also revealed that oscillatory phase reliably tracked temporal dynamics but not equivalently across rates. Finally, mutual information analyses quantifying the relation between phase and cochlear-scaled correlations also showed preferential processing in 2 distinct regimes, with the alpha range again yielding different patterns. The results support the hypothesis that the human auditory system employs (at least) a 2-timescale processing mode, in which lower and higher perceptual sampling scales are segregated by an intermediate temporal regime in the alpha band that likely reflects different underlying computations. PMID:29095816

Putting the pieces together: a crystal clear window into CLC anion channel regulation.

PubMed

Strange, Kevin

2011-01-01

CLC anion transport proteins function as Cl (-) channels and Cl (-) /H (+) exchangers and are found in all major groups of life including archaebacteria. Early electrophysiological studies suggested that CLC anion channels have two pores that are opened and closed independently by a "fast" gating process operating on a millisecond timescale, and a "common" or "slow" gate that opens and closes both pores simultaneously with a timescale of seconds (Figure 1A). Subsequent biochemical and molecular experiments suggested that CLC channels/transporters are homodomeric proteins ( 1-3) .

Evolution of intrinsic disorder in eukaryotic proteins.

PubMed

Ahrens, Joseph B; Nunez-Castilla, Janelle; Siltberg-Liberles, Jessica

2017-09-01

Conformational flexibility conferred though regions of intrinsic structural disorder allows proteins to behave as dynamic molecules. While it is well-known that intrinsically disordered regions can undergo disorder-to-order transitions in real-time as part of their function, we also are beginning to learn more about the dynamics of disorder-to-order transitions along evolutionary time-scales. Intrinsically disordered regions endow proteins with functional promiscuity, which is further enhanced by the ability of some of these regions to undergo real-time disorder-to-order transitions. Disorder content affects gene retention after whole genome duplication, but it is not necessarily conserved. Altered patterns of disorder resulting from evolutionary disorder-to-order transitions indicate that disorder evolves to modify function through refining stability, regulation, and interactions. Here, we review the evolution of intrinsically disordered regions in eukaryotic proteins. We discuss the interplay between secondary structure and disorder on evolutionary time-scales, the importance of disorder for eukaryotic proteome expansion and functional divergence, and the evolutionary dynamics of disorder.

Diffusion and Mixing in Globular Clusters

NASA Astrophysics Data System (ADS)

Meiron, Yohai; Kocsis, Bence

2018-03-01

Collisional relaxation describes the stochastic process with which a self-gravitating system near equilibrium evolves in phase-space due to the fluctuating gravitational field of the system. The characteristic timescale of this process is called the relaxation time. In this paper, we highlight the difference between two measures of the relaxation time in globular clusters: (1) the diffusion time with which the isolating integrals of motion (i.e., energy E and angular momentum magnitude L) of individual stars change stochastically and (2) the asymptotic timescale required for a family of orbits to mix in the cluster. More specifically, the former corresponds to the instantaneous rate of change of a star’s E or L, while the latter corresponds to the timescale for the stars to statistically forget their initial conditions. We show that the diffusion timescales of E and L vary systematically around the commonly used half-mass relaxation time in different regions of the cluster by a factor of ∼10 and ∼100, respectively, for more than 20% of the stars. We define the mixedness of an orbital family at any given time as the correlation coefficient between its E or L probability distribution functions and those of the whole cluster. Using Monte Carlo simulations, we find that mixedness converges asymptotically exponentially with a decay timescale that is ∼10 times the half-mass relaxation time.

Accelerated molecular dynamics simulations of the octopamine receptor using GPUs: discovery of an alternate agonist-binding position.

PubMed

Kastner, Kevin W; Izaguirre, Jesús A

2016-10-01

Octopamine receptors (OARs) perform key biological functions in invertebrates, making this class of G-protein coupled receptors (GPCRs) worth considering for insecticide development. However, no crystal structures and very little research exists for OARs. Furthermore, GPCRs are large proteins, are suspended in a lipid bilayer, and are activated on the millisecond timescale, all of which make conventional molecular dynamics (MD) simulations infeasible, even if run on large supercomputers. However, accelerated Molecular Dynamics (aMD) simulations can reduce this timescale to even hundreds of nanoseconds, while running the simulations on graphics processing units (GPUs) would enable even small clusters of GPUs to have processing power equivalent to hundreds of CPUs. Our results show that aMD simulations run on GPUs can successfully obtain the active and inactive state conformations of a GPCR on this reduced timescale. Furthermore, we discovered a potential alternate active-state agonist-binding position in the octopamine receptor which has yet to be observed and may be a novel GPCR agonist-binding position. These results demonstrate that a complex biological system with an activation process on the millisecond timescale can be successfully simulated on the nanosecond timescale using a simple computing system consisting of a small number of GPUs. Proteins 2016; 84:1480-1489. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Gamma-ray burster recurrence timescales

NASA Technical Reports Server (NTRS)

Schaefer, B. E.; Cline, T. L.

1984-01-01

Three optical transients have been found which are associated with gamma-ray bursters (GRBs). The deduced recurrence timescale for these optical transients (tau sub opt) will depend on the minimum brightness for which a flash would be detected. A detailed analysis using all available data of tau sub opt as a function of E(gamma)/E(opt) is given. For flashes similar to those found in the Harvard archives, the best estimate of tau sub opt is 0.74 years, with a 99% confidence interval from 0.23 years to 4.7 years. It is currently unclear whether the optical transients from GRBs also give rise to gamma-ray events. One way to test this association is to measure the recurrence timescale of gamma-ray events tau sub gamma. A total of 210 gamma-ray error boxes were examined and it was found that the number of observed overlaps is not significantly different from the number expected from chance coincidence. This observation can be used to place limits on tau sub gamma for an assumed luminosity function. It was found that tau sub gamma is approx. 10 yr if bursts are monoenergetic. However, if GRBs have a power law luminosity function with a wide dynamic range, then the limit is tau sub gamma 0.5 yr. Hence, the gamma-ray data do not require tau sub gamma and tau sub opt to be different.

Connecting marine productivity to sea-spray via nanoscale biological processes: Phytoplankton Dance or Death Disco?

NASA Astrophysics Data System (ADS)

O'Dowd, Colin; Ceburnis, Darius; Ovadnevaite, Jurgita; Bialek, Jakub; Stengel, Dagmar B.; Zacharias, Merry; Nitschke, Udo; Connan, Solene; Rinaldi, Matteo; Fuzzi, Sandro; Decesari, Stefano; Cristina Facchini, Maria; Marullo, Salvatore; Santoleri, Rosalia; Dell'Anno, Antonio; Corinaldesi, Cinzia; Tangherlini, Michael; Danovaro, Roberto

2015-10-01

Bursting bubbles at the ocean-surface produce airborne salt-water spray-droplets, in turn, forming climate-cooling marine haze and cloud layers. The reflectance and ultimate cooling effect of these layers is determined by the spray’s water-uptake properties that are modified through entrainment of ocean-surface organic matter (OM) into the airborne droplets. We present new results illustrating a clear dependence of OM mass-fraction enrichment in sea spray (OMss) on both phytoplankton-biomass, determined from Chlorophyll-a (Chl-a) and Net Primary Productivity (NPP). The correlation coefficient for OMss as a function of Chl-a increased form 0.67 on a daily timescale to 0.85 on a monthly timescale. An even stronger correlation was found as a function of NPP, increasing to 0.93 on a monthly timescale. We suggest the observed dependence is through the demise of the bloom, driven by nanoscale biological processes (such as viral infections), releasing large quantities of transferable OM comprising cell debris, exudates and other colloidal materials. This OM, through aggregation processes, leads to enrichment in sea-spray, thus demonstrating an important coupling between biologically-driven plankton bloom termination, marine productivity and sea-spray modification with potentially significant climate impacts.

Clinopyroxene Diffusion Chronometry of the Scaup Lake Rhyolite, Yellowstone Caldera, WY

NASA Astrophysics Data System (ADS)

Brugman, K. K.; Till, C. B.; Bose, M.

2016-12-01

Eruption of the Scaup Lake flow (SCL) ended 220,000 years of dormancy and began the youngest sequence of eruptions at Yellowstone caldera [Christiansen et al., USGS, 2007]. Quantification of the time intervals between magmatic events and eruption recorded in SCL is critical to interpreting signs of unrest at modern-day Yellowstone. SCL rhyolite includes zoned phenocrysts and accessory phases that indicate multiple rejuvenation events occurred shortly before eruption; previous studies focused on feldspar and zircon crystal records [e.g. Bindeman et al., J.Pet, 2008; Till et al., Geology, 2015]. Here we exploit zoned clinopyroxene (cpx)—one of the earliest-crystalized minerals in SCL as indicated by petrographic relationships—as a diffusion dating tool and utilize elements with different diffusivities to more precisely resolve rejuvenation-eruption timescales. Using NanoSIMS concentration profiles with 300-900 nanometer spacing, we employ the slower-diffusing REE Ce as a proxy for the initial profile shape of faster-diffusing Fe to calculate diffusive timescales. The outermost resolvable zone boundary in SCL cpx yields a rejuvenation-eruption timescale of 166 ± 80 yrs (1 SD). In comparison, modeling relaxation of Fe from a step function initial condition at the same temperature (920°C) yields a less precise timescale of 488 +9000 -300 yrs. Examination of our results, in concert with observed petrographic relationships, indicates SCL cpx may record an older, separate rejuvenation event than those recorded in feldspar rims at < 10 months and 10-40 years prior to eruption [Till et al., Geology, 2015]. The difference in the youngest recorded event between feldspar and cpx may be due to different crystallization intervals for these phases and/or slower crystal growth rates for cpx relative to feldspar. Our diffusion modeling results reinforce that intracrystalline zoning timescales modeled using a step function initial condition should be considered maxima, especially in viscous rhyolitic magmas, and that different phases may not record the same series of pre-eruptive events due to differences in crystallization behavior.

Large sized non-uniform sediment transport at high capacity on steep slopes

NASA Astrophysics Data System (ADS)

Fu, X.; Zhang, L.; Duan, J. G.

2015-12-01

Transport of large-sized particles such as cobbles in steep streams still remains poorly understood in spite of its importance in mountain stream morphdynamics. Here we explored the law of cobble transport and the effect of cobble existence on gravel bed material transport, using flume experiments with a steep slope (4.9%) and water and sediment constantly supplying. The experiments were conducted in an 8 m long and 0.6 m wide circulating flume with the maximal size up to 90 mm and cobble concentrations in the sediment bed ranging from 22 percent to 6 percent. The sediment transport rate is on the order of 1000 g/m/s, which could be taken as high rate transport compared with existing researches. Bed load transport rate and flow variables were measured after the flume reached an equilibrium state. Bed surface topography was also measured by applying Kinect range camera before and after each run in order to analyze the fractal characteristics of the bed surface under different flow conditions. Critical shear stress of each size friction was estimated from the reference transport method (RTM) and a new hiding function was recommended. Preliminary results show that the bed was nearly in an equal mobility transport regime. We then plot dimensionless fractional transport rate versus dimensionless shear stress and assess the existing bed load transport formulas of non-uniform sediments for their applicability at high sediment transport capacity. This study contributes to the comprehension of high rate sediment transport on steep slopes.

Steep, Transient Density Gradients in the Martian Ionosphere Similar to the Ionopause at Venus

NASA Astrophysics Data System (ADS)

Duru, Firdevs; Gurnett, Donald; Frahm, Rudy; Winningham, D. L.; Morgan, David; Howes, Gregory

Using Mars Advanced Radar for Subsurface and Ionospheric Sounding (MARSIS) on the Mars Express (MEX) spacecraft, the electron density can be measured by two methods: from the excitation of local plasma oscillations and from remote sounding. A study of the local electron density versus time for 1664 orbits revealed that in 132 orbits very sharp gradients in the electron density occurred that are similar to the ionopause boundary commonly observed at Venus. In 40 of these cases, remote sounding data have also confirmed identical locations of steep ionopause-like density gradients. Measurements from the Analyzer of Space Plasma and Energetic Atoms (ASPERA-3) Electron Spectrometer (ELS) and Ion Mass Analyzer (IMA) instruments (also on Mars Express) verify that these sharp decreases in the electron density occur somewhere between the end of the region where ionospheric photoelectrons are dominant and the magnetosheath. Combined studies of the two experiments reveal that the steep density gradients define a boundary where the magnetic fields change from open to closed. This study shows that, although the individual cases are from a wide range of altitudes, the average altitude of the boundary as a function of solar zenith angle is almost constant. The average altitude is approximately 500 km up to solar zenith angles of 60o, after which it shows a slight increase. The average thickness of the boundary is about 22 km according to remote sounding measurements. The altitude of the steep gradients shows an increase at locations with strong crustal magnetic fields.

Multiwavelength Study of Quiescent States of Mrk 421 with Unprecedented Hard X-Ray Coverage Provided by NuSTAR in 2013

NASA Technical Reports Server (NTRS)

Balokovic, M.; Paneque, D.; Madejski, G.; Chiang, J.; Furniss, A.; Ajello, M.; Alexander, D. M.; Barret, D.; Blandford, R. D.; Boggs, S. E.;

Exploring Slope with Stairs & Steps

ERIC Educational Resources Information Center

Smith, Toni M.; Seshaiyer, Padmanabhan; Peixoto, Nathalia; Suh, Jennifer M.; Bagshaw, Graham; Collins, Laurena K.

2013-01-01

As much as ever before, mathematics teachers are searching for ways to connect mathematics to real-life scenarios within STEM contexts. As students develop skill in proportional reasoning, they examine graphical representations of linear functions, learn to associate "slope" with "steepness" and rate of change, and develop…

Decadal variability of the Tropical Atlantic Ocean Surface Temperature in shipboard measurements and in a Global Ocean-Atmosphere model

NASA Technical Reports Server (NTRS)

Mehta, Vikram M.; Delworth, Thomas

1995-01-01

Sea surface temperature (SST) variability was investigated in a 200-yr integration of a global model of the coupled oceanic and atmospheric general circulations developed at the Geophysical Fluid Dynamics Laboratory (GFDL). The second 100 yr of SST in the coupled model's tropical Atlantic region were analyzed with a variety of techniques. Analyses of SST time series, averaged over approximately the same subregions as the Global Ocean Surface Temperature Atlas (GOSTA) time series, showed that the GFDL SST anomalies also undergo pronounced quasi-oscillatory decadal and multidecadal variability but at somewhat shorter timescales than the GOSTA SST anomalies. Further analyses of the horizontal structures of the decadal timescale variability in the GFDL coupled model showed the existence of two types of variability in general agreement with results of the GOSTA SST time series analyses. One type, characterized by timescales between 8 and 11 yr, has high spatial coherence within each hemisphere but not between the two hemispheres of the tropical Atlantic. A second type, characterized by timescales between 12 and 20 yr, has high spatial coherence between the two hemispheres. The second type of variability is considerably weaker than the first. As in the GOSTA time series, the multidecadal variability in the GFDL SST time series has approximately opposite phases between the tropical North and South Atlantic Oceans. Empirical orthogonal function analyses of the tropical Atlantic SST anomalies revealed a north-south bipolar pattern as the dominant pattern of decadal variability. It is suggested that the bipolar pattern can be interpreted as decadal variability of the interhemispheric gradient of SST anomalies. The decadal and multidecadal timescale variability of the tropical Atlantic SST, both in the actual and in the GFDL model, stands out significantly above the background 'red noise' and is coherent within each of the time series, suggesting that specific sets of processes may be responsible for the choice of the decadal and multidecadal timescales. Finally, it must be emphasized that the GFDL coupled ocean-atmosphere model generates the decadal and multidecadal timescale variability without any externally applied force, solar or lunar, at those timescales.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gustafson, William I.; Ma, Po-Lun; Singh, Balwinder

The physics suite of the Community Atmosphere Model version 5 (CAM5) has recently been implemented in the Weather Research and Forecasting (WRF) model to explore the behavior of the parameterization suite at high resolution and in the more controlled setting of a limited area model. The initial paper documenting this capability characterized the behavior for northern high latitude conditions. This present paper characterizes the precipitation characteristics for continental, mid-latitude, springtime conditions during the Midlatitude Continental Convective Clouds Experiment (MC3E) over the central United States. This period exhibited a range of convective conditions from those driven strongly by large-scale synoptic regimesmore » to more locally driven convection. The study focuses on the precipitation behavior at 32 km grid spacing to better anticipate how the physics will behave in the global model when used at similar grid spacing in the coming years. Importantly, one change to the Zhang-McFarlane deep convective parameterization when implemented in WRF was to make the convective timescale parameter an explicit function of grid spacing. This study examines the sensitivity of the precipitation to the default value of the convective timescale in WRF, which is 600 seconds for 32 km grid spacing, to the value of 3600 seconds used for 2 degree grid spacing in CAM5. For comparison, an infinite convective timescale is also used. The results show that the 600 second timescale gives the most accurate precipitation over the central United States in terms of rain amount. However, this setting has the worst precipitation diurnal cycle, with the convection too tightly linked to the daytime surface heating. Longer timescales greatly improve the diurnal cycle but result in less precipitation and produce a low bias. An analysis of rain rates shows the accurate precipitation amount with the shorter timescale is assembled from an over abundance of drizzle combined with too little heavy rain events. With longer timescales one can improve the distribution, particularly for the extreme rain rates. Ultimately, without changing other aspects of the physics, one must choose between accurate diurnal timing and rain amount when choosing an appropriate convective timescale.« less

A mixing timescale model for TPDF simulations of turbulent premixed flames

DOE PAGES

Kuron, Michael; Ren, Zhuyin; Hawkes, Evatt R.; ...

2017-02-06

Transported probability density function (TPDF) methods are an attractive modeling approach for turbulent flames as chemical reactions appear in closed form. However, molecular micro-mixing needs to be modeled and this modeling is considered a primary challenge for TPDF methods. In the present study, a new algebraic mixing rate model for TPDF simulations of turbulent premixed flames is proposed, which is a key ingredient in commonly used molecular mixing models. The new model aims to properly account for the transition in reactive scalar mixing rate behavior from the limit of turbulence-dominated mixing to molecular mixing behavior in flamelets. An a priorimore » assessment of the new model is performed using direct numerical simulation (DNS) data of a lean premixed hydrogen–air jet flame. The new model accurately captures the mixing timescale behavior in the DNS and is found to be a significant improvement over the commonly used constant mechanical-to-scalar mixing timescale ratio model. An a posteriori TPDF study is then performed using the same DNS data as a numerical test bed. The DNS provides the initial conditions and time-varying input quantities, including the mean velocity, turbulent diffusion coefficient, and modeled scalar mixing rate for the TPDF simulations, thus allowing an exclusive focus on the mixing model. Here, the new mixing timescale model is compared with the constant mechanical-to-scalar mixing timescale ratio coupled with the Euclidean Minimum Spanning Tree (EMST) mixing model, as well as a laminar flamelet closure. It is found that the laminar flamelet closure is unable to properly capture the mixing behavior in the thin reaction zones regime while the constant mechanical-to-scalar mixing timescale model under-predicts the flame speed. Furthermore, the EMST model coupled with the new mixing timescale model provides the best prediction of the flame structure and flame propagation among the models tested, as the dynamics of reactive scalar mixing across different flame regimes are appropriately accounted for.« less

A mixing timescale model for TPDF simulations of turbulent premixed flames

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuron, Michael; Ren, Zhuyin; Hawkes, Evatt R.

Transported probability density function (TPDF) methods are an attractive modeling approach for turbulent flames as chemical reactions appear in closed form. However, molecular micro-mixing needs to be modeled and this modeling is considered a primary challenge for TPDF methods. In the present study, a new algebraic mixing rate model for TPDF simulations of turbulent premixed flames is proposed, which is a key ingredient in commonly used molecular mixing models. The new model aims to properly account for the transition in reactive scalar mixing rate behavior from the limit of turbulence-dominated mixing to molecular mixing behavior in flamelets. An a priorimore » assessment of the new model is performed using direct numerical simulation (DNS) data of a lean premixed hydrogen–air jet flame. The new model accurately captures the mixing timescale behavior in the DNS and is found to be a significant improvement over the commonly used constant mechanical-to-scalar mixing timescale ratio model. An a posteriori TPDF study is then performed using the same DNS data as a numerical test bed. The DNS provides the initial conditions and time-varying input quantities, including the mean velocity, turbulent diffusion coefficient, and modeled scalar mixing rate for the TPDF simulations, thus allowing an exclusive focus on the mixing model. Here, the new mixing timescale model is compared with the constant mechanical-to-scalar mixing timescale ratio coupled with the Euclidean Minimum Spanning Tree (EMST) mixing model, as well as a laminar flamelet closure. It is found that the laminar flamelet closure is unable to properly capture the mixing behavior in the thin reaction zones regime while the constant mechanical-to-scalar mixing timescale model under-predicts the flame speed. Furthermore, the EMST model coupled with the new mixing timescale model provides the best prediction of the flame structure and flame propagation among the models tested, as the dynamics of reactive scalar mixing across different flame regimes are appropriately accounted for.« less

Microsecond protein dynamics observed at the single-molecule level

NASA Astrophysics Data System (ADS)

Otosu, Takuhiro; Ishii, Kunihiko; Tahara, Tahei

2015-07-01

How polypeptide chains acquire specific conformations to realize unique biological functions is a central problem of protein science. Single-molecule spectroscopy, combined with fluorescence resonance energy transfer, is utilized to study the conformational heterogeneity and the state-to-state transition dynamics of proteins on the submillisecond to second timescales. However, observation of the dynamics on the microsecond timescale is still very challenging. This timescale is important because the elementary processes of protein dynamics take place and direct comparison between experiment and simulation is possible. Here we report a new single-molecule technique to reveal the microsecond structural dynamics of proteins through correlation of the fluorescence lifetime. This method, two-dimensional fluorescence lifetime correlation spectroscopy, is applied to clarify the conformational dynamics of cytochrome c. Three conformational ensembles and the microsecond transitions in each ensemble are indicated from the correlation signal, demonstrating the importance of quantifying microsecond dynamics of proteins on the folding free energy landscape.

Microsecond protein dynamics observed at the single-molecule level

PubMed Central

Otosu, Takuhiro; Ishii, Kunihiko; Tahara, Tahei

2015-01-01

How polypeptide chains acquire specific conformations to realize unique biological functions is a central problem of protein science. Single-molecule spectroscopy, combined with fluorescence resonance energy transfer, is utilized to study the conformational heterogeneity and the state-to-state transition dynamics of proteins on the submillisecond to second timescales. However, observation of the dynamics on the microsecond timescale is still very challenging. This timescale is important because the elementary processes of protein dynamics take place and direct comparison between experiment and simulation is possible. Here we report a new single-molecule technique to reveal the microsecond structural dynamics of proteins through correlation of the fluorescence lifetime. This method, two-dimensional fluorescence lifetime correlation spectroscopy, is applied to clarify the conformational dynamics of cytochrome c. Three conformational ensembles and the microsecond transitions in each ensemble are indicated from the correlation signal, demonstrating the importance of quantifying microsecond dynamics of proteins on the folding free energy landscape. PMID:26151767

AGN Variability: Probing Black Hole Accretion

NASA Astrophysics Data System (ADS)

Moreno, Jackeline; O'Brien, Jack; Vogeley, Michael S.; Richards, Gordon T.; Kasliwal, Vishal P.

2017-01-01

We combine the long temporal baseline of Sloan Digital Sky Survey (SDSS) for quasars in Stripe 82 with the high precision photometry of the Kepler/K2 Satellite to study the physics of optical variability in the accretion disk and supermassive black hole engine. We model the lightcurves directly as Continuous-time Auto Regressive Moving Average processes (C-ARMA) with the Kali analysis package (Kasliwal et al. 2016). These models are extremely robust to irregular sampling and can capture aperiodic variability structure on various timescales. We also estimate the power spectral density and structure function of both the model family and the data. A Green's function kernel may also be estimated for the resulting C-ARMA parameter fit, which may be interpreted as the response to driving impulses such as hotspots in the accretion disk. We also examine available spectra for our AGN sample to relate observed and modelled behavior to spectral properties. The objective of this work is twofold: to explore the proper physical interpretation of different families of C-ARMA models applied to AGN optical flux variability and to relate empirical characteristic timescales of our AGN sample to physical theory or to properties estimated from spectra or simulations like the disk viscosity and temperature. We find that AGN with strong variability features on timescales resolved by K2 are well modelled by a low order C-ARMA family while K2 lightcurves with weak amplitude variability are dominated by outliers and measurement errors which force higher order model fits. This work explores a novel approach to combining SDSS and K2 data sets and presents recovered characteristic timescales of AGN variability.

A 62 ka record from the WAIS Divide ice core with annual resolution to 30 ka (so far)

NASA Astrophysics Data System (ADS)

Fudge, T. J.; Taylor, K.; McGwire, K.; Brook, E.; Sowers, T.; Steig, E.; White, J.; Vaughn, B.; Bay, R.; McConnell, J.; Waddington, E.; Conway, H.; Clow, G.; Cuffey, K.; Cole-Dai, J.; Ferris, D.; Severinghaus, J.

2012-04-01

Drilling of the West Antarctic Ice Sheet (WAIS) Divide ice core has been completed to a depth of 3400 m, about 60 meters above the bed. We present an annually resolved time scale for the most recent 30ka (to 2800 m) based on electrical conductivity measurements, called "timescale WDC06A-5". Below 2800 m the ice is dated by matching isotopes, methane, and/or dust records to other ice cores. Optical borehole logging provides stratigraphic ties to other cores for the bottom-most 75 m that was drilled in December 2011, and indicates the bottom-most ice has an age of 62 ka. The relatively young ice at depth is likely the result of basal melting. The inferred annual layer thickness of the deep ice is >1 cm, suggesting that annual layer counting throughout the entire core may be possible with continuous flow analysis of the ice core chemistry; however, the annual signal in the electrical measurements fades at about 30 ka. We compare the WDC06A-5 timescale through the glacial-interglacial transition with the Greenland GICC05 and GISP2 timescales via rapid variations in methane. We calculate a preliminary delta-age with: 1) accumulation rate inferred from the annual layer thicknesses and thinning functions computed with a 1-D ice flow model, and 2) surface temperature inferred from the low resolution d18O record and a preliminary borehole temperature profile. The WDC06A-5 timescale agrees with the GICC05 and GISP2 timescales to within decades at the 8.2k event and the ACR termination (Younger Dryas/Preboreal transition, 11.7 ka). This is within the delta-age and correlation uncertainties. At the rapid methane drop at ~12.8 ka, the WDC06A-5 timescale is ~150 years older than GICC05 and ~90 older than GISP2; while at ~14.8 ka, the timescales once again agree within the delta-age and correlation uncertainties. The cause of the age discrepancy at 12.8 ka is unclear. We also compare the WDC06A-5 timescale at Dansgaard-Oeschger events 3 and 4 (~27.5 and 29 ka) to the radiometrically-dated speolethem records from Hulu Cave, China (Larry Edwards and Hai Cheng, personal communication). To make such a comparison, we assume that the rapid variations in methane from the WAIS Divide core are synchronous with the rapid variations in d18O in the speleothem record. We find that the WDC06A-5 timescale is multiple hundreds of years older than the Hulu Cave record. As the GICC05 timescale is younger than the Hulu timescale, this puts the WDC06A-5 timescale even older than the GICC05. The uncertainties in the comparison are large both because of the uncertainty in the synchroneity of the ice core methane and speleothem isotope variations and because of the larger delta-age for the ice core in the glacial period. The timescale for the WAIS Divide core will be revised when the CFA results become available.

Emergence of Functional Hierarchy in a Multiple Timescale Neural Network Model: A Humanoid Robot Experiment

PubMed Central

Yamashita, Yuichi; Tani, Jun

2008-01-01

It is generally thought that skilled behavior in human beings results from a functional hierarchy of the motor control system, within which reusable motor primitives are flexibly integrated into various sensori-motor sequence patterns. The underlying neural mechanisms governing the way in which continuous sensori-motor flows are segmented into primitives and the way in which series of primitives are integrated into various behavior sequences have, however, not yet been clarified. In earlier studies, this functional hierarchy has been realized through the use of explicit hierarchical structure, with local modules representing motor primitives in the lower level and a higher module representing sequences of primitives switched via additional mechanisms such as gate-selecting. When sequences contain similarities and overlap, however, a conflict arises in such earlier models between generalization and segmentation, induced by this separated modular structure. To address this issue, we propose a different type of neural network model. The current model neither makes use of separate local modules to represent primitives nor introduces explicit hierarchical structure. Rather than forcing architectural hierarchy onto the system, functional hierarchy emerges through a form of self-organization that is based on two distinct types of neurons, each with different time properties (“multiple timescales”). Through the introduction of multiple timescales, continuous sequences of behavior are segmented into reusable primitives, and the primitives, in turn, are flexibly integrated into novel sequences. In experiments, the proposed network model, coordinating the physical body of a humanoid robot through high-dimensional sensori-motor control, also successfully situated itself within a physical environment. Our results suggest that it is not only the spatial connections between neurons but also the timescales of neural activity that act as important mechanisms leading to functional hierarchy in neural systems. PMID:18989398

Initial mass function of planetesimals formed by the streaming instability

NASA Astrophysics Data System (ADS)

Schäfer, Urs; Yang, Chao-Chin; Johansen, Anders

2017-01-01

The streaming instability is a mechanism to concentrate solid particles into overdense filaments that undergo gravitational collapse and form planetesimals. However, it remains unclear how the initial mass function of these planetesimals depends on the box dimensions of numerical simulations. To resolve this, we perform simulations of planetesimal formation with the largest box dimensions to date, allowing planetesimals to form simultaneously in multiple filaments that can only emerge within such large simulation boxes. In our simulations, planetesimals with sizes between 80 km and several hundred kilometers form. We find that a power law with a rather shallow exponential cutoff at the high-mass end represents the cumulative birth mass function better than an integrated power law. The steepness of the exponential cutoff is largely independent of box dimensions and resolution, while the exponent of the power law is not constrained at the resolutions we employ. Moreover, we find that the characteristic mass scale of the exponential cutoff correlates with the mass budget in each filament. Together with previous studies of high-resolution simulations with small box domains, our results therefore imply that the cumulative birth mass function of planetesimals is consistent with an exponentially tapered power law with a power-law exponent of approximately -1.6 and a steepness of the exponential cutoff in the range of 0.3-0.4.

Choice of time-scale in Cox's model analysis of epidemiologic cohort data: a simulation study.

PubMed

Thiébaut, Anne C M; Bénichou, Jacques

2004-12-30

Cox's regression model is widely used for assessing associations between potential risk factors and disease occurrence in epidemiologic cohort studies. Although age is often a strong determinant of disease risk, authors have frequently used time-on-study instead of age as the time-scale, as for clinical trials. Unless the baseline hazard is an exponential function of age, this approach can yield different estimates of relative hazards than using age as the time-scale, even when age is adjusted for. We performed a simulation study in order to investigate the existence and magnitude of bias for different degrees of association between age and the covariate of interest. Age to disease onset was generated from exponential, Weibull or piecewise Weibull distributions, and both fixed and time-dependent dichotomous covariates were considered. We observed no bias upon using age as the time-scale. Upon using time-on-study, we verified the absence of bias for exponentially distributed age to disease onset. For non-exponential distributions, we found that bias could occur even when the covariate of interest was independent from age. It could be severe in case of substantial association with age, especially with time-dependent covariates. These findings were illustrated on data from a cohort of 84,329 French women followed prospectively for breast cancer occurrence. In view of our results, we strongly recommend not using time-on-study as the time-scale for analysing epidemiologic cohort data. 2004 John Wiley & Sons, Ltd.

Robot Would Climb Steep Terrain

NASA Technical Reports Server (NTRS)

Kennedy, Brett; Ganino, Anthony; Aghazarian, Hrand; Hogg, Robert; McHerny, Michael; Garrett, Michael

2007-01-01

This brief describes the steep terrain access robot (STAR) -- a walking robot that has been proposed for exploring steep terrain on remote planets. The STAR would be able to climb up or down on slopes as steep as vertical, and even beyond vertical to overhangs. Its system of walking mechanisms and controls would be to react forces and maintain stability. To enable the STAR to anchor itself in the terrain on steep slopes to maintain stability and react forces, it would be necessary to equip the tips of the walking legs with new ultrasonic/ sonic drill corers (USDCs) and to develop sensors and control algorithms to enable robust utilization of the USDCs.

Sequence-specific backbone resonance assignments and microsecond timescale molecular dynamics simulation of human eosinophil-derived neurotoxin.

PubMed

Gagné, Donald; Narayanan, Chitra; Bafna, Khushboo; Charest, Laurie-Anne; Agarwal, Pratul K; Doucet, Nicolas

2017-10-01

Eight active canonical members of the pancreatic-like ribonuclease A (RNase A) superfamily have been identified in human. All structural homologs share similar RNA-degrading functions, while also cumulating other various biological activities in different tissues. The functional homologs eosinophil-derived neurotoxin (EDN, or RNase 2) and eosinophil cationic protein (ECP, or RNase 3) are known to be expressed and secreted by eosinophils in response to infection, and have thus been postulated to play an important role in host defense and inflammatory response. We recently initiated the biophysical and dynamical investigation of several vertebrate RNase homologs and observed that clustering residue dynamics appear to be linked with the phylogeny and biological specificity of several members. Here we report the 1 H, 13 C and 15 N backbone resonance assignments of human EDN (RNase 2) and its molecular dynamics simulation on the microsecond timescale, providing means to pursue this comparative atomic-scale functional and dynamical analysis by NMR and computation over multiple time frames.

A simple microstructure return model explaining microstructure noise and Epps effects

NASA Astrophysics Data System (ADS)

Saichev, A.; Sornette, D.

2014-01-01

We present a novel simple microstructure model of financial returns that combines (i) the well-known ARFIMA process applied to tick-by-tick returns, (ii) the bid-ask bounce effect, (iii) the fat tail structure of the distribution of returns and (iv) the non-Poissonian statistics of inter-trade intervals. This model allows us to explain both qualitatively and quantitatively important stylized facts observed in the statistics of both microstructure and macrostructure returns, including the short-ranged correlation of returns, the long-ranged correlations of absolute returns, the microstructure noise and Epps effects. According to the microstructure noise effect, volatility is a decreasing function of the time-scale used to estimate it. The Epps effect states that cross correlations between asset returns are increasing functions of the time-scale at which the returns are estimated. The microstructure noise is explained as the result of the negative return correlations inherent in the definition of the bid-ask bounce component (ii). In the presence of a genuine correlation between the returns of two assets, the Epps effect is due to an average statistical overlap of the momentum of the returns of the two assets defined over a finite time-scale in the presence of the long memory process (i).

Frank Beach Award Winner: Steroids as Neuromodulators of Brain Circuits and Behavior

PubMed Central

Remage-Healey, Luke

2014-01-01

Neurons communicate primarily via action potentials that transmit information on the timescale of milliseconds. Neurons also integrate information via alterations in gene transcription and protein translation that are sustained for hours to days after initiation. Positioned between these two signaling timescales are the minute-by-minute actions of neuromodulators. Over the course of minutes, the classical neuromodulators (such as serotonin, dopamine, octopamine, and norepinephrine) can alter and/or stabilize neural circuit patterning as well as behavioral states. Neuromodulators allow many flexible outputs from neural circuits and can encode information content into the firing state of neural networks. The idea that steroid molecules can operate as genuine behavioral neuromodulators - synthesized by and acting within brain circuits on a minute-by-minute timescale - has gained traction in recent years. Evidence for brain steroid synthesis at synaptic terminals has converged with evidence for the rapid actions of brain-derived steroids on neural circuits and behavior. The general principle emerging from this work is that the production of steroid hormones within brain circuits can alter their functional connectivity and shift sensory representations by enhancing their information coding. Steroids produced in the brain can therefore change the information content of neuronal networks to rapidly modulate sensory experience and sensorimotor functions. PMID:25110187

Time-dependent permeability evolution in compacting volcanic fracture systems and implications for gas overpressure

NASA Astrophysics Data System (ADS)

Farquharson, Jamie I.; Wadsworth, Fabian B.; Heap, Michael J.; Baud, Patrick

2017-06-01

Volcanic eruptions are driven by the ascent of volatile-laden magma. The capacity of a volcano system to outgas these volatiles-its permeability-controls the explosive potential, and fractures at volcanic conduit margins play a crucial role in tempering eruption explosivity by acting as outgassing pathways. However, these fractures are often filled with hot volcanic debris that welds and compacts over time, meaning that these permeable pathways have a finite lifetime. While numerous studies emphasize that permeability evolution is important for regulating pressure in shallow volcanic systems, how and when this occurs remains an outstanding question in volcanology. In this contribution, we show that different pressure evolution regimes can be expected across a range of silicic systems as a function of the width and distribution of fractures in the system, the timescales over which they can outgas (a function of depth and temperature), and the permeability of the host material. We define outgassing, diffusive relaxation, and pressure increase regimes, which are distinguished by comparing the characteristic timescales over which they operate. Moreover, we define a critical permeability threshold, which determines (in concert with characteristic timescales of diffusive mass exchange between the pore and melt phases) whether systems fracture and outgas efficiently, or if a volcano will be prone to pressure increases, incomplete healing, and explosive failure.

Prolonged lateral steep position impairs respiratory mechanics during continuous lateral rotation therapy in respiratory failure.

PubMed

Schellongowski, Peter; Losert, Heidrun; Locker, Gottfried J; Laczika, Klaus; Frass, Michael; Holzinger, Ulrike; Bojic, Andja; Staudinger, Thomas

2007-04-01

To establish whether prolonged lateral steep position during continuous rotation therapy leads to improvement on pulmonary gas exchange, respiratory mechanics and hemodynamics. Prospective observational study. Intensive care unit of a university hospital. Twelve consecutive patients suffering from acute lung injury or adult respiratory distress syndrome undergoing continuous rotation therapy. Blood gas analysis, static lung compliance, blood pressure, cardiac index and pulmonary shunt fraction were measured in supine as well as in left and right lateral steep position at 62 degrees during continuous rotation therapy (phase I). Rotation was then stopped for 30 min with the patients in supine position, left and right lateral steep position, and the same measurements were performed every 10 min (phase II). Phase I and II revealed no significant changes in PaO(2)/FiO(2) ratio, mean arterial blood pressure, pulmonary shunt fraction, or cardiac index. Significantly lower static compliance was observed in lateral steep position than in supine position (p<0.001). Concomitantly, PaCO(2) was significantly lower in supine position than in left and right lateral steep position (p<0.01). Lateral steep positioning impairs the compliance of the respiratory system. Prolonged lateral steep position does not lead to benefits with respect to oxygenation or hemodynamics. Individual response to the different positions is unpredictable. The pauses in "extreme" positions should be as short as possible.

Complex Processes from Dynamical Architectures with Time-Scale Hierarchy

PubMed Central

Perdikis, Dionysios; Huys, Raoul; Jirsa, Viktor

2011-01-01

The idea that complex motor, perceptual, and cognitive behaviors are composed of smaller units, which are somehow brought into a meaningful relation, permeates the biological and life sciences. However, no principled framework defining the constituent elementary processes has been developed to this date. Consequently, functional configurations (or architectures) relating elementary processes and external influences are mostly piecemeal formulations suitable to particular instances only. Here, we develop a general dynamical framework for distinct functional architectures characterized by the time-scale separation of their constituents and evaluate their efficiency. Thereto, we build on the (phase) flow of a system, which prescribes the temporal evolution of its state variables. The phase flow topology allows for the unambiguous classification of qualitatively distinct processes, which we consider to represent the functional units or modes within the dynamical architecture. Using the example of a composite movement we illustrate how different architectures can be characterized by their degree of time scale separation between the internal elements of the architecture (i.e. the functional modes) and external interventions. We reveal a tradeoff of the interactions between internal and external influences, which offers a theoretical justification for the efficient composition of complex processes out of non-trivial elementary processes or functional modes. PMID:21347363

Towards a Stochastic Predictive Understanding of Ecosystem Functioning and Resilience to Environmental Changes

NASA Astrophysics Data System (ADS)

Pappas, C.

2017-12-01

Terrestrial ecosystem processes respond differently to hydrometeorological variability across timescales, and so does our scientific understanding of the underlying mechanisms. Process-based modeling of ecosystem functioning is therefore challenging, especially when long-term predictions are envisioned. Here we analyze the statistical properties of hydrometeorological and ecosystem variability, i.e., the variability of ecosystem process related to vegetation carbon dynamics, from hourly to decadal timescales. 23 extra-tropical forest sites, covering different climatic zones and vegetation characteristics, are examined. Micrometeorological and reanalysis data of precipitation, air temperature, shortwave radiation and vapor pressure deficit are used to describe hydrometeorological variability. Ecosystem variability is quantified using long-term eddy covariance flux data of hourly net ecosystem exchange of CO2 between land surface and atmosphere, monthly remote sensing vegetation indices, annual tree-ring widths and above-ground biomass increment estimates. We find that across sites and timescales ecosystem variability is confined within a hydrometeorological envelope that describes the range of variability of the available resources, i.e., water and energy. Furthermore, ecosystem variability demonstrates long-term persistence, highlighting ecological memory and slow ecosystem recovery rates after disturbances. We derive an analytical model, combining deterministic harmonics and stochastic processes, that represents major mechanisms and uncertainties and mimics the observed pattern of hydrometeorological and ecosystem variability. This stochastic framework offers a parsimonious and mathematically tractable approach for modelling ecosystem functioning and for understanding its response and resilience to environmental changes. Furthermore, this framework reflects well the observed ecological memory, an inherent property of ecosystem functioning that is currently not captured by simulation results with process-based models. Our analysis offers a perspective for terrestrial ecosystem modelling, combining current process understanding with stochastic methods, and paves the way for new model-data integration opportunities in Earth system sciences.

Multiple time-scales and the developmental dynamics of social systems

PubMed Central

Flack, Jessica C.

2012-01-01

To build a theory of social complexity, we need to understand how aggregate social properties arise from individual interaction rules. Here, I review a body of work on the developmental dynamics of pigtailed macaque social organization and conflict management that provides insight into the mechanistic causes of multi-scale social systems. In this model system coarse-grained, statistical representations of collective dynamics are more predictive of the future state of the system than the constantly in-flux behavioural patterns at the individual level. The data suggest that individuals can perceive and use these representations for strategical decision-making. As an interaction history accumulates the coarse-grained representations consolidate. This constrains individual behaviour and provides the foundations for new levels of organization. The time-scales on which these representations change impact whether the consolidating higher-levels can be modified by individuals and collectively. The time-scales appear to be a function of the ‘coarseness’ of the representations and the character of the collective dynamics over which they are averages. The data suggest that an advantage of multiple timescales is that they allow social systems to balance tradeoffs between predictability and adaptability. I briefly discuss the implications of these findings for cognition, social niche construction and the evolution of new levels of organization in biological systems. PMID:22641819

A probabilistic framework for the cover effect in bedrock erosion

NASA Astrophysics Data System (ADS)

Turowski, Jens M.; Hodge, Rebecca

2017-06-01

The cover effect in fluvial bedrock erosion is a major control on bedrock channel morphology and long-term channel dynamics. Here, we suggest a probabilistic framework for the description of the cover effect that can be applied to field, laboratory, and modelling data and thus allows the comparison of results from different sources. The framework describes the formation of sediment cover as a function of the probability of sediment being deposited on already alluviated areas of the bed. We define benchmark cases and suggest physical interpretations of deviations from these benchmarks. Furthermore, we develop a reach-scale model for sediment transfer in a bedrock channel and use it to clarify the relations between the sediment mass residing on the bed, the exposed bedrock fraction, and the transport stage. We derive system timescales and investigate cover response to cyclic perturbations. The model predicts that bedrock channels can achieve grade in steady state by adjusting bed cover. Thus, bedrock channels have at least two characteristic timescales of response. Over short timescales, the degree of bed cover is adjusted such that the supplied sediment load can just be transported, while over long timescales, channel morphology evolves such that the bedrock incision rate matches the tectonic uplift or base-level lowering rate.

Multiple time-scales and the developmental dynamics of social systems.

PubMed

Flack, Jessica C

2012-07-05

To build a theory of social complexity, we need to understand how aggregate social properties arise from individual interaction rules. Here, I review a body of work on the developmental dynamics of pigtailed macaque social organization and conflict management that provides insight into the mechanistic causes of multi-scale social systems. In this model system coarse-grained, statistical representations of collective dynamics are more predictive of the future state of the system than the constantly in-flux behavioural patterns at the individual level. The data suggest that individuals can perceive and use these representations for strategical decision-making. As an interaction history accumulates the coarse-grained representations consolidate. This constrains individual behaviour and provides the foundations for new levels of organization. The time-scales on which these representations change impact whether the consolidating higher-levels can be modified by individuals and collectively. The time-scales appear to be a function of the 'coarseness' of the representations and the character of the collective dynamics over which they are averages. The data suggest that an advantage of multiple timescales is that they allow social systems to balance tradeoffs between predictability and adaptability. I briefly discuss the implications of these findings for cognition, social niche construction and the evolution of new levels of organization in biological systems.

Predicting landslides in clearcut patches

Treesearch

Raymond M. Rice; Norman H. Pillsbury

1982-01-01

Abstract - Accelerated erosion in the form of landslides can be an undesirable consequence of clearcut logging on steep slopes. Forest managers need a method of predicting the risk of such erosion. Data collected after logging in a granitic area of northwestern California were used to develop a predictive equation. A linear discriminant function was developed that...

Alerting Attention and Time Perception in Children.

ERIC Educational Resources Information Center

Droit-Volet, Sylvie

2003-01-01

Examined effects of a click signaling arrival of a visual stimulus to be timed on temporal discrimination in 3-, 5-, and 8-year-olds. Found that in all groups, the proportion of long responses increased with the stimulus duration, although the steepness of functions increased with age. Stimulus duration was judged longer with than without the…

"This Has to Be Family": Humanizing Classroom Management in Urban Schools

ERIC Educational Resources Information Center

Ullucci, Kerri

2009-01-01

Classroom management in urban schools is frequently steeped in mythology. Students are seen as difficult and disrespectful, needing highly structured discipline policies in order to function. However, a different reality exists. This study looks at the way well-respected teachers in urban schools utilize their classroom space, manage their…

Beyond discounting: possible experimental models of impulse control.

PubMed

Monterosso, J; Ainslie, G

1999-10-01

Animal studies of impulsivity have typically used one of three models: a delay of reward procedure, a differential reinforcement for low rate responding (DRL) procedure, or an autoshaping procedure. In each of these paradigms, we argue, measurement of impulsivity is implicitly or explicitly equated with the effect delay has on the value of reward. The steepness by which delay diminishes value (the temporal discount function) is treated as an index of impulsivity. In order to provide a better analog of human impulsivity, this model needs to be expanded to include the converse of impulsivity - self-control. Through mechanisms such as committing to long range interests before the onset of temptation, or through bundling individual choices into classes of choices that are made at once, human decision-making can often look far less myopic than single trial experiments predict. For people, impulsive behavior may be more often the result of the breakdown of self-control mechanisms than of steep discount functions. Existing animal models of self-control are discussed, and future directions are suggested for psychopharmacological research.

Heterogeneous chain dynamics and aggregate lifetimes in precise acid-containing polyethylenes: Experiments and simulations

DOE PAGES

Middleton, L. Robert; Tarver, Jacob D.; Cordaro, Joseph; ...

2016-11-10

Melt state dynamics for a series of strictly linear polyethylenes with precisely spaced associating functional groups were investigated. The periodic pendant acrylic acid groups form hydrogen-bonded acid aggregates within the polyethylene (PE) matrix. The dynamics of these nanoscale heterogeneous morphologies were investigated from picosecond to nanosecond timescales by both quasi-elastic neutron scattering (QENS) measurements and fully atomistic molecular dynamics (MD) simulations. Two dynamic processes were observed. The faster dynamic processes which occur at the picosecond timescales are compositionally insensitive and indicative of spatially restricted local motions. The slower dynamic processes are highly composition dependent and indicate the structural relaxation ofmore » the polymer backbone. Higher acid contents, or shorter PE spacers between pendant acid groups, slow the structural relaxation timescale and increase the stretching parameter (β) of the structural relaxation. Additionally, the dynamics of specific hydrogen atom positions along the backbone correlate structural heterogeneity imposed by the associating acid groups with a mobility gradient along the polymer backbone. At time intervals (<2 ns), the mean-squared displacements for the four methylene groups closest to the acid groups are up to 10 times smaller than those of methylene groups further from the acid groups. At longer timescales acid aggregates rearrange and the chain dynamics of the slow, near-aggregate regions and the faster bridge regions converge, implying a characteristic timescale for the passage of chains between aggregates. As a result, the characterization of the nanoscale chain dynamics in these associating polymer systems both provides validation of simulation force fields and provides understanding of heterogeneous chain dynamics in associating polymers.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sobolewska, M. A.; Siemiginowska, A.; Kelly, B. C.

We study the γ-ray variability of 13 blazars observed with the Fermi/Large Area Telescope (LAT). These blazars have the most complete light curves collected during the first four years of the Fermi sky survey. We model them with the Ornstein-Uhlenbeck (OU) process or a mixture of the OU processes. The OU process has power spectral density (PSD) proportional to 1/f {sup α} with α changing at a characteristic timescale, τ{sub 0}, from 0 (τ >> τ{sub 0}) to 2 (τ << τ{sub 0}). The PSD of the mixed OU process has two characteristic timescales and an additional intermediate region withmore » 0 < α < 2. We show that the OU model provides a good description of the Fermi/LAT light curves of three blazars in our sample. For the first time, we constrain a characteristic γ-ray timescale of variability in two BL Lac sources, 3C 66A and PKS 2155-304 (τ{sub 0} ≅ 25 days and τ{sub 0} ≅ 43 days, respectively, in the observer's frame), which are longer than the soft X-ray timescales detected in blazars and Seyfert galaxies. We find that the mixed OU process approximates the light curves of the remaining 10 blazars better than the OU process. We derive limits on their long and short characteristic timescales, and infer that their Fermi/LAT PSD resemble power-law functions. We constrain the PSD slopes for all but one source in the sample. We find hints for sub-hour Fermi/LAT variability in four flat spectrum radio quasars. We discuss the implications of our results for theoretical models of blazar variability.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Middleton, L. Robert; Tarver, Jacob D.; Cordaro, Joseph

Melt state dynamics for a series of strictly linear polyethylenes with precisely spaced associating functional groups were investigated. The periodic pendant acrylic acid groups form hydrogen-bonded acid aggregates within the polyethylene (PE) matrix. The dynamics of these nanoscale heterogeneous morphologies were investigated from picosecond to nanosecond timescales by both quasi-elastic neutron scattering (QENS) measurements and fully atomistic molecular dynamics (MD) simulations. Two dynamic processes were observed. The faster dynamic processes which occur at the picosecond timescales are compositionally insensitive and indicative of spatially restricted local motions. The slower dynamic processes are highly composition dependent and indicate the structural relaxation ofmore » the polymer backbone. Higher acid contents, or shorter PE spacers between pendant acid groups, slow the structural relaxation timescale and increase the stretching parameter (β) of the structural relaxation. Additionally, the dynamics of specific hydrogen atom positions along the backbone correlate structural heterogeneity imposed by the associating acid groups with a mobility gradient along the polymer backbone. At time intervals (<2 ns), the mean-squared displacements for the four methylene groups closest to the acid groups are up to 10 times smaller than those of methylene groups further from the acid groups. At longer timescales acid aggregates rearrange and the chain dynamics of the slow, near-aggregate regions and the faster bridge regions converge, implying a characteristic timescale for the passage of chains between aggregates. As a result, the characterization of the nanoscale chain dynamics in these associating polymer systems both provides validation of simulation force fields and provides understanding of heterogeneous chain dynamics in associating polymers.« less

Population shuffling between ground and high energy excited states

PubMed Central

Sabo, T Michael; Trent, John O; Lee, Donghan

2015-01-01

Stochastic processes powered by thermal energy lead to protein motions traversing time-scales from picoseconds to seconds. Fundamental to protein functionality is the utilization of these dynamics for tasks such as catalysis, folding, and allostery. A hierarchy of motion is hypothesized to connect and synergize fast and slow dynamics toward performing these essential activities. Population shuffling predicts a “top-down” temporal hierarchy, where slow time-scale conformational interconversion leads to a shuffling of the free energy landscape for fast time-scale events. Until now, population shuffling was only applied to interconverting ground states. Here, we extend the framework of population shuffling to be applicable for a system interconverting between low energy ground and high energy excited states, such as the SH3 domain mutants G48M and A39V/N53P/V55L from the Fyn tyrosine kinase, providing another tool for accessing the structural dynamics of high energy excited states. Our results indicate that the higher energy gauche− rotameric state for the leucine χ2 dihedral angle contributes significantly to the distribution of rotameric states in both the major and minor forms of the SH3 domain. These findings are corroborated with unrestrained molecular dynamics (MD) simulations on both the major and minor states of the SH3 domain demonstrating high correlations between experimental and back-calculated leucine χ2 rotameric populations. Taken together, we demonstrate how fast time-scale rotameric side-chain population distributions can be extracted from slow time-scale conformational exchange data further extending the scope and the applicability of the population shuffling model. PMID:26316263

Population shuffling between ground and high energy excited states.

PubMed

Sabo, T Michael; Trent, John O; Lee, Donghan

2015-11-01

Stochastic processes powered by thermal energy lead to protein motions traversing time-scales from picoseconds to seconds. Fundamental to protein functionality is the utilization of these dynamics for tasks such as catalysis, folding, and allostery. A hierarchy of motion is hypothesized to connect and synergize fast and slow dynamics toward performing these essential activities. Population shuffling predicts a "top-down" temporal hierarchy, where slow time-scale conformational interconversion leads to a shuffling of the free energy landscape for fast time-scale events. Until now, population shuffling was only applied to interconverting ground states. Here, we extend the framework of population shuffling to be applicable for a system interconverting between low energy ground and high energy excited states, such as the SH3 domain mutants G48M and A39V/N53P/V55L from the Fyn tyrosine kinase, providing another tool for accessing the structural dynamics of high energy excited states. Our results indicate that the higher energy gauche - rotameric state for the leucine χ2 dihedral angle contributes significantly to the distribution of rotameric states in both the major and minor forms of the SH3 domain. These findings are corroborated with unrestrained molecular dynamics (MD) simulations on both the major and minor states of the SH3 domain demonstrating high correlations between experimental and back-calculated leucine χ2 rotameric populations. Taken together, we demonstrate how fast time-scale rotameric side-chain population distributions can be extracted from slow time-scale conformational exchange data further extending the scope and the applicability of the population shuffling model. © 2015 The Protein Society.

Fast antibody fragment motion: flexible linkers act as entropic spring

PubMed Central

Stingaciu, Laura R.; Ivanova, Oxana; Ohl, Michael; Biehl, Ralf; Richter, Dieter

2016-01-01

A flexible linker region between three fragments allows antibodies to adjust their binding sites to an antigen or receptor. Using Neutron Spin Echo Spectroscopy we observed fragment motion on a timescale of 7 ns with motional amplitudes of about 1 nm relative to each other. The mechanistic complexity of the linker region can be described by a spring model with Brownian motion of the fragments in a harmonic potential. Displacements, timescale, friction and force constant of the underlying dynamics are accessed. The force constant exhibits a similar strength to an entropic spring, with friction of the fragment matching the unbound state. The observed fast motions are fluctuations in pre-existing equilibrium configurations. The Brownian motion of domains in a harmonic potential is the appropriate model to examine functional hinge motions dependent on the structural topology and highlights the role of internal forces and friction to function. PMID:27020739

Fast antibody fragment motion: flexible linkers act as entropic spring

DOE PAGES

Stingaciu, Laura R.; Ivanova, Oxana; Ohl, Michael; ...

2016-03-29

A flexible linker region between three fragments allows antibodies to adjust their binding sites to an antigen or receptor. Using Neutron Spin Echo Spectroscopy we observed fragment motion on a timescale of 7 ns with motional amplitudes of about 1 nm relative to each other. The mechanistic complexity of the linker region can be described by a spring model with Brownian motion of the fragments in a harmonic potential. Displacements, timescale, friction and force constant of the underlying dynamics are accessed. The force constant exhibits a similar strength to an entropic spring, with friction of the fragment matching the unboundmore » state. The observed fast motions are fluctuations in pre-existing equilibrium configurations. In conclusion, the Brownian motion of domains in a harmonic potential is the appropriate model to examine functional hinge motions dependent on the structural topology and highlights the role of internal forces and friction to function.« less

Fast antibody fragment motion: flexible linkers act as entropic spring.

PubMed

Stingaciu, Laura R; Ivanova, Oxana; Ohl, Michael; Biehl, Ralf; Richter, Dieter

2016-03-29

A flexible linker region between three fragments allows antibodies to adjust their binding sites to an antigen or receptor. Using Neutron Spin Echo Spectroscopy we observed fragment motion on a timescale of 7 ns with motional amplitudes of about 1 nm relative to each other. The mechanistic complexity of the linker region can be described by a spring model with Brownian motion of the fragments in a harmonic potential. Displacements, timescale, friction and force constant of the underlying dynamics are accessed. The force constant exhibits a similar strength to an entropic spring, with friction of the fragment matching the unbound state. The observed fast motions are fluctuations in pre-existing equilibrium configurations. The Brownian motion of domains in a harmonic potential is the appropriate model to examine functional hinge motions dependent on the structural topology and highlights the role of internal forces and friction to function.

Geomorphic versus land use controls on suspended sediment rating curves

NASA Astrophysics Data System (ADS)

Belmont, P.; Vaughan, A. A.; Fisher, A. C. N.

2017-12-01

The relation between river discharge (Q) and suspended sediment (SS) concentration reflects the degree to which sediment sources are accessed or depleted across the range of flow conditions. Increased availability of high resolution topography and land use data greatly enhance our ability to evaluate linkages between characteristics of these sediment rating curves (SRCs) and the geomorphic features that influence them. We evaluated Q-SS relations at 45 gages throughout Minnesota, USA representing a wide variety of landscape settings in terms of topography, land use, and geologic history. We characterized the SRCs according to the overall shape, steepness (exponent), vertical offset (coefficient) and SS concentration under low flow (90% exceedance) conditions. Rivers exhibited three distinct SRC shapes, simple power functions, threshold power functions and peaked power functions. We used random forest models to analyze relations between SRC parameters and attributes of the watershed as well as the near-channel environment. The model correctly classified 78% of SRC shapes and explained 60% of variance in the SRC exponent, 43% of the SRC coefficient for rising limb samples, and 45% of variance under low flow conditions. Notably, the random forest models predict that near-channel morphology predominately controls both the shape and steepness of the sediment rating curves. Land use predominately controls the vertical offset (coefficient) and SS concentration under low flow conditions. These findings suggest that land use and watershed restoration practices may have little capacity to alter the shape and steepness of these curves as these characteristics may be dictated by the geologic and geomorphic setting. Rather, human influences in the watershed may exhibit the greatest influence on suspended sediment concentrations at moderate to low flows. Criteria to evaluate improvements in water quality as a result of changes in land management might be most meaningful if they target these moderate to low flow conditions.

Negative Differential Resistance and Steep Switching in Chevron Graphene Nanoribbon Field-Effect Transistors

NASA Astrophysics Data System (ADS)

Smith, Samuel; Llinas, Juan-Pablo; Bokor, Jeffrey; Salahuddin, Sayeef

2018-01-01

Ballistic quantum transport calculations based on the non-equilbrium Green's function formalism show that field-effect transistor devices made from chevron-type graphene nanoribbons (CGNRs) could exhibit negative differential resistance with peak-to-valley ratios in excess of 4800 at room temperature as well as steep-slope switching with 6 mV/decade subtheshold swing over five orders of magnitude and ON-currents of 88$\\mu$A/$\\mu$m. This is enabled by the superlattice-like structure of these ribbons that have large periodic unit cells with regions of different effective bandgap, resulting in minibands and gaps in the density of states above the conduction band edge. The CGNR ribbon used in our proposed device has been previously fabricated with bottom-up chemical synthesis techniques and could be incorporated into an experimentally-realizable structure.

Influence of steeping solution and storage temperature on the color change of garlic.

PubMed

Bae, Song Hwan; Lee, Seog-Won; Kim, Mi-Ryung; Kim, Jin Man; Suh, Hyung Joo

2010-01-01

The objective of this study was to investigate the browning of garlic under different steeping conditions and storage temperatures. The brown indices of steeped garlics showed lowest values (7.3 and 7) in 25% and 50% EtOH at 7 d of storage. The degree of browning of steeped garlics was lowest (10.2 in 25% EtOH and 10.4 in 50% EtOH) in the samples soaked for 8 h at 13 d of storage. As the storage temperature was increased from 10 to 40 degrees C, the brown indices of garlics revealed an increasing trend relative to storage time regardless of steeping treatment. Overall, the kinetic parameters showed relatively low R(2) and irregular reaction constants, but the k(o) values showed an increasing trend with temperature under a zero-order model. The highest polyphenol content within the garlic bulbs was seen in controls (without steeping treatment, 588.9 microg/g), than 0% EtOH (water, 392.5 microg/g), than 25% EtOH (211.3 microg/g), and finally 50% EtOH (155.6 microg/g). The polyphenol oxidase activity of garlic showed a similar trend to that of polyphenol content. However, the texture properties of garlics steeped with 25% and 50% did not change. The garlic color preferred by consumers is a creamy-white, but this is susceptible to enzymatic browning when pre-peeled and chopped. When garlic was steeped in the 25% and 50% alcohol, the browning of garlic was prevented during storage.

Details of the disorder-induced transition between s ± and s ++ states in the two-band model for Fe-based superconductors

NASA Astrophysics Data System (ADS)

Shestakov, V. A.; Korshunov, M. M.; Togushova, Yu N.; Efremov, D. V.; Dolgov, O. V.

2018-07-01

Irradiation of superconductors with different particles is one of many ways to investigate the effects of disorder. Here we study the disorder-induced transition between s ± and s ++ states in the two-band model for Fe-based superconductors with nonmagnetic impurities. Specifically, we investigate the important question of whether the superconducting gaps during the transition change smoothly or abruptly. We show that the behavior can be of either type and is controlled by the ratio of intraband to interband impurity scattering potentials, and by a parameter σ , that represents scattering strength and ranges from zero (Born approximation) to one (unitary limit). For the pure interband scattering potential and the scattering strength σ ≲ 0.11, the {s}+/- \\to {s}++ transition is accompanied by steep changes in the gaps, while for larger values of σ , the gaps change smoothly. The behavior of the gaps is characterized by steep changes at low temperatures, T< 0.1{T}{{c}0} with T c0 being the critical temperature in the clean limit, otherwise it changes gradually. The critical temperature T c is always a smooth function of the scattering rate in spite of the steep changes in the behavior of the gaps.

Form and function of the bulbus arteriosus in yellowfin tuna (Thunnus albacares), bigeye tuna (Thunnus obesus) and blue marlin (Makaira nigricans): static properties.

PubMed

Braun, Marvin H; Brill, Richard W; Gosline, John M; Jones, David R

2003-10-01

The juxtaposition of heart and gills in teleost fish means that the Windkessel function characteristic of the whole mammalian arterial tree has to be subserved by the extremely short ventral aorta and bulbus arteriosus. Over the functional pressure range, arteries from blue marlin (Makaira nigricans) and yellowfin tuna (Thunnus albacares) have J-shaped pressure-volume (P-V) loops, while bulbi from the same species have r-shaped P-V loops, with a steep initial rise followed by a compliant plateau phase. The steep initial rise in pressure is due to the geometry of the lumen. The interactions between radius, pressure and tension require a large initial pressure to open the bulbar lumen for flow. The plateau is due to the unique organization of the bulbar wall. The large elastin:collagen ratio, limited amount of collagen arranged circumferentially, lack of elastin lamellae and low hydrophobicity of the elastin itself all combine to lower stiffness, increase extensibility and allow efficient recoil. Even though the modulus of bulbus material is much lower than that of an artery, at large volumes the overall stiffness of the bulbus increases rapidly. The morphological features that give rise to the special inflation characteristics of the bulbus help to extend flow and maintain pressure during diastole.

Development and validation of a smartphone-based digits-in-noise hearing test in South African English.

PubMed

Potgieter, Jenni-Marí; Swanepoel, De Wet; Myburgh, Hermanus Carel; Hopper, Thomas Christopher; Smits, Cas

2015-07-01

The objective of this study was to develop and validate a smartphone-based digits-in-noise hearing test for South African English. Single digits (0-9) were recorded and spoken by a first language English female speaker. Level corrections were applied to create a set of homogeneous digits with steep speech recognition functions. A smartphone application was created to utilize 120 digit-triplets in noise as test material. An adaptive test procedure determined the speech reception threshold (SRT). Experiments were performed to determine headphones effects on the SRT and to establish normative data. Participants consisted of 40 normal-hearing subjects with thresholds ≤15 dB across the frequency spectrum (250-8000 Hz) and 186 subjects with normal-hearing in both ears, or normal-hearing in the better ear. The results show steep speech recognition functions with a slope of 20%/dB for digit-triplets presented in noise using the smartphone application. The results of five headphone types indicate that the smartphone-based hearing test is reliable and can be conducted using standard Android smartphone headphones or clinical headphones. A digits-in-noise hearing test was developed and validated for South Africa. The mean SRT and speech recognition functions correspond to previous developed telephone-based digits-in-noise tests.

Evaluation of organic matter addition and incorporation on steep cut slopes : phase I, literature review and potential applicable equipment evaluation.

DOT National Transportation Integrated Search

2003-08-01

Erosion of steep highway cut slopes in Montana is the consequence of poor vegetation development in : nutrient-poor growth media resulting from highway construction where topsoil cannot physically be : replaced due to slope steepness. A literature re...

Evaluation of organic matter compost addition and incorporation on steep cut slopes. Phase II : test plot construction and performance monitoring

DOT National Transportation Integrated Search

2007-04-01

Erosion of steep highway cut slopes in Montana is often times the consequence of poor vegetation development in nutrient-poor growth media resulting from highway construction where topsoil cannot physically be replaced due to slope steepness. Topsoil...

Evaluation of organic matter addition and incorporation on steep cut slopes : phase II, test plot construction and performance monitoring.

DOT National Transportation Integrated Search

2007-04-01

Erosion of steep highway cut slopes in Montana is often times the consequence of poor vegetation development : in nutrient-poor growth media resulting from highway construction where topsoil cannot physically be replaced : due to slope steepness. Top...

Environmental impacts of forest road construction on mountainous terrain.

PubMed

Caliskan, Erhan

2013-03-15

Forest roads are the base infrastructure foundation of forestry operations. These roads entail a complex engineering effort because they can cause substantial environmental damage to forests and include a high-cost construction. This study was carried out in four sample sites of Giresun, Trabzon(2) and Artvin Forest Directorate, which is in the Black Sea region of Turkey. The areas have both steep terrain (30-50% gradient) and very steep terrain (51-80% gradient). Bulldozers and hydraulic excavators were determined to be the main machines for forest road construction, causing environmental damage and cross sections in mountainous areas.As a result of this study, the percent damage to forests was determined as follows: on steep terrain, 21% of trees were damaged by excavators and 33% of trees were damaged by bulldozers during forest road construction, and on very steep terrain, 27% of trees were damaged by excavators and 44% of trees were damaged by bulldozers during forest road construction. It was also determined that on steep terrain, when excavators were used, 12.23% less forest area was destroyed compared with when bulldozers were used and 16.13% less area was destroyed by excavators on very steep terrain. In order to reduce the environmental damage on the forest ecosystem, especially in steep terrains, hydraulic excavators should replace bulldozers in forest road construction activities.

Perspectives for short timescale variability studies with Gaia

NASA Astrophysics Data System (ADS)

Roelens, M.; Eyer, L.; Mowlavi, N.; Lecoeur-Taïbi, I.; Rimoldini, L.; Blanco-Cuaresma, S.; Palaversa, L.; Süveges, M.; Charnas, J.; Wevers, T.

2017-12-01

We assess the potential of Gaia for detecting and characterizing short timescale variables, i.e. at timescale from a few seconds to a dozen hours, through extensive light-curve simulations for various short timescale variable types, including both periodic and non-periodic variability. We evidence that the variogram analysis applied to Gaia photometry should enable to detect such fast variability phenomena, down to amplitudes of a few millimagnitudes, with limited contamination from longer timescale variables or constant sources. This approach also gives valuable information on the typical timescale(s) of the considered variation, which could complement results of classical period search methods, and help prepare ground-based follow-up of the Gaia short timescale candidates.

Statistical Evolution of the Lightning Flash

NASA Astrophysics Data System (ADS)

Zoghzoghy, F. G.; Cohen, M.; Said, R.; Inan, U. S.

2012-12-01

Natural lightning is one of the most fascinating and powerful electrical processes on Earth. To date, the physics behind this natural phenomenon are not fully understood, due primarily to the difficulty of obtaining measurements inside thunderstorms and to the wide range of timescales involved (from nanoseconds to seconds). Our aim is to use accurate lightning geo-location data from the National Lightning Detection Network (NLDN) to study statistical patterns in lightning, taking advantage of the fact that millions of lightning flashes occur around the globe every day. We present two sets of results, one involving the patterns of flashes in a storm, and a second involving the patterns of strokes in a flash. These patterns can provide a surrogate measure of the timescales and the spatial extents of the underlying physical processes. First, we study the timescales of charge buildup inside thunderstorms. We find that, following a lightning flash, the probability of another neighboring flash decreases and takes tens of seconds to recover. We find that this suppression effect is a function of flash type, stroke peak current, cloud-to-ground (CG) stroke multiplicity, and other lightning and geographical parameters. We find that the probabilities of subsequent flashes are more suppressed following oceanic lightning, or following flashes with higher peak currents and/or higher multiplicities (for CG flashes). Second, we use NLDN data to study the evolution of the strokes within a CG flash. A CG flash typically includes multiple return strokes, which can occur in the same channel or in multiple channels within a few kilometers. We cluster NLDN stroke data into flashes and produce the probability density function of subsequent strokes as a function of distance and time-delays relative to the previous stroke. Using this technique, we investigate processes which occur during the CG lightning flash with nanosecond to millisecond timescales. For instance, our results suggest that subsequent strokes that occur in a newly formed channel follow a pattern that propagates at a speed of ~200 km/s. We present our statistical techniques and discuss more thoroughly our work and results.

FOURIER ANALYSIS OF BLAZAR VARIABILITY: KLEIN–NISHINA EFFECTS AND THE JET SCATTERING ENVIRONMENT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Finke, Justin D.; Becker, Peter A., E-mail: justin.finke@nrl.navy.mil, E-mail: pbecker@gmu.edu

The strong variability of blazars can be characterized by power spectral densities (PSDs) and Fourier frequency-dependent time lags. In previous work, we created a new theoretical formalism for describing the PSDs and time lags produced via a combination of stochastic particle injection and emission via the synchrotron, synchrotron self-Compton, and external Compton (EC) processes. This formalism used the Thomson cross section and simple δ-function approximations to model the synchrotron and Compton emissivities. Here we expand upon this work, using the full Compton cross section and detailed and accurate emissivities. Our results indicate good agreement between the PSDs computed using themore » δ-function approximations and those computed using the accurate expressions, provided the observed photons are produced primarily by electrons with energies exceeding the lower limit of the injected particle population. Breaks are found in the PSDs at frequencies corresponding to the cooling timescales of the electrons primarily responsible for the observed emission, and the associated time lags are related to the difference in electron cooling timescales between the two energy channels, as expected. If the electron cooling timescales can be determined from the observed time lags and/or the observed EC PSDs, then one could in principle use the method developed here to determine the energy of the external seed photon source for EC, which is an important unsolved problem in blazar physics.« less

Formation Timescales of Amosphous Rims on Lunar Grains Derived from ARTEMIS Observations

NASA Technical Reports Server (NTRS)

Poppe, A. R.; Farrell, W. M.; Halekas, Jasper S.

2018-01-01

The weathering of airless bodies exposed to space is a fundamental process in the formation and evolution of planetary surfaces. At the Moon, space weathering induces a variety of physical, chemical, and optical changes including the formation of nanometer-sized amorphous rims on individual lunar grains. These rims are formed by vapor redeposition from micrometeoroid impacts and ion irradiation-induced amorphization of the crystalline matrix. For ion irradiation-induced rims, however, laboratory experiments of the depth and formation timescales of these rims stand in stark disagreement with observations of lunar soil grains. We use observations by the Acceleration, Reconnection, Turbulence, and Electrodynamics of the Moon's Interaction with the Sun (ARTEMIS) spacecraft in orbit around the Moon to compute the mean ion flux to the lunar surface between 10 eV and 5 MeV and convolve this flux with ion irradiation-induced vacancy production rates as a function of depth calculated using the Stopping Range of Ions in Matter model. By combining these results with laboratory measurements of the critical fluence for charged-particle amorphization in olivine, we can predict the formation timescale of amorphous rims as a function of depth in olivinic grains. This analysis resolves two outstanding issues: (1) the provenance of >100 nm amorphous rims on lunar grains and (2) the nature of the depth-age relationship for amorphous rims on lunar grains.

Formation Timescales of Amorphous Rims on Lunar Grains Derived From ARTEMIS Observations

NASA Astrophysics Data System (ADS)

Poppe, A. R.; Farrell, W. M.; Halekas, J. S.

2018-01-01

The weathering of airless bodies exposed to space is a fundamental process in the formation and evolution of planetary surfaces. At the Moon, space weathering induces a variety of physical, chemical, and optical changes including the formation of nanometer-sized amorphous rims on individual lunar grains. These rims are formed by vapor redeposition from micrometeoroid impacts and ion irradiation-induced amorphization of the crystalline matrix. For ion irradiation-induced rims, however, laboratory experiments of the depth and formation timescales of these rims stand in stark disagreement with observations of lunar soil grains. We use observations by the Acceleration, Reconnection, Turbulence, and Electrodynamics of the Moon's Interaction with the Sun (ARTEMIS) spacecraft in orbit around the Moon to compute the mean ion flux to the lunar surface between 10 eV and 5 MeV and convolve this flux with ion irradiation-induced vacancy production rates as a function of depth calculated using the Stopping Range of Ions in Matter model. By combining these results with laboratory measurements of the critical fluence for charged-particle amorphization in olivine, we can predict the formation timescale of amorphous rims as a function of depth in olivinic grains. This analysis resolves two outstanding issues: (1) the provenance of >100 nm amorphous rims on lunar grains and (2) the nature of the depth-age relationship for amorphous rims on lunar grains.

Critical conditions for rill initiation

Treesearch

C. Yao; T. Lei; W. J. Elliot; D. K. McCool; J. Zhao; S. Chen

2008-01-01

Quantifying critical conditions of rill formation can be useful for a better understanding of soil erosion processes. Current studies lack a consensus and related rationale on how to describe these conditions. This study was based on the concepts that (1) the shear stress available for erosion at any given point is a function of the runoff rate, the slope steepness,...

Infiltration and interrill erosion rates after a wildfire in western Montana, USA

USDA-ARS?s Scientific Manuscript database

The 2000 Valley Complex wildfire burned in steep montane forests with ash cap soils in western Montana, USA. The effects of high burn severity on forest soil hydrologic function was examined using rainfall simulations (100 mm h-1 for 1 h) on 0.5-m2 plots. Infiltration rates and sediment yields and c...

The Maximum Likelihood Solution for Inclination-only Data

NASA Astrophysics Data System (ADS)

Arason, P.; Levi, S.

2006-12-01

The arithmetic means of inclination-only data are known to introduce a shallowing bias. Several methods have been proposed to estimate unbiased means of the inclination along with measures of the precision. Most of the inclination-only methods were designed to maximize the likelihood function of the marginal Fisher distribution. However, the exact analytical form of the maximum likelihood function is fairly complicated, and all these methods require various assumptions and approximations that are inappropriate for many data sets. For some steep and dispersed data sets, the estimates provided by these methods are significantly displaced from the peak of the likelihood function to systematically shallower inclinations. The problem in locating the maximum of the likelihood function is partly due to difficulties in accurately evaluating the function for all values of interest. This is because some elements of the log-likelihood function increase exponentially as precision parameters increase, leading to numerical instabilities. In this study we succeeded in analytically cancelling exponential elements from the likelihood function, and we are now able to calculate its value for any location in the parameter space and for any inclination-only data set, with full accuracy. Furtermore, we can now calculate the partial derivatives of the likelihood function with desired accuracy. Locating the maximum likelihood without the assumptions required by previous methods is now straight forward. The information to separate the mean inclination from the precision parameter will be lost for very steep and dispersed data sets. It is worth noting that the likelihood function always has a maximum value. However, for some dispersed and steep data sets with few samples, the likelihood function takes its highest value on the boundary of the parameter space, i.e. at inclinations of +/- 90 degrees, but with relatively well defined dispersion. Our simulations indicate that this occurs quite frequently for certain data sets, and relatively small perturbations in the data will drive the maxima to the boundary. We interpret this to indicate that, for such data sets, the information needed to separate the mean inclination and the precision parameter is permanently lost. To assess the reliability and accuracy of our method we generated large number of random Fisher-distributed data sets and used seven methods to estimate the mean inclination and precision paramenter. These comparisons are described by Levi and Arason at the 2006 AGU Fall meeting. The results of the various methods is very favourable to our new robust maximum likelihood method, which, on average, is the most reliable, and the mean inclination estimates are the least biased toward shallow values. Further information on our inclination-only analysis can be obtained from: http://www.vedur.is/~arason/paleomag

Timescale of Destabilization of a Magma Ocean Cumulate

NASA Astrophysics Data System (ADS)

Morison, A.; Labrosse, S.; Deguen, R.; Alboussiere, T.

2017-12-01

A common scenario considered during the formation of terrestrial planets is the crystallization of a global magma ocean from the bottom-up. The crystallization of the surface magma ocean is expected to be rapid, on a timescale of the order of 1 Myr. This has lead several authors to assume convection in the solid part of the crystallizing mantle only sets out after the complete solidification of the surface magma ocean. Assuming fractionnal crystallization of this ocean, the magma (and resulting solid) is more and more enriched in FeO as the crystallization progresses. This leads to an unstable stratification and an overturn. After overturn, the resulting solid mantle would be strongly compositionally stratified. The present study tests the assumption that solid-state mantle overturn only occurs after complete crystallization of the surface magma ocean. We model convection in the solid part of the mantle only and parametrize the presence of a magma ocean with boundary conditions. Our model includes through these boundary conditions the possibility for matter to cross the boundary between the solid shell and the magma ocean by melting and freezing. We perfomed a linear stability analysis with respect to the temperature and compositional profiles obtained in a growing magma ocean cumulate to assess the destabilization timescale of such profiles as a function of the crystallized thickness. By comparing this timescale with a model of surface magma ocean crystallization, we deduce the time and crystallized thickness at which the convection timescale is comparable to the age of the solid crystallizing mantle. This time is found to be small ( 1 kyr) compared to the time needed to crystallize the entire surface magma ocean ( 1 Myr).

X-ray fluctuation timescale and Black Hole mass relation in AGN

NASA Astrophysics Data System (ADS)

Wandel, Amri; Malkan, Mathew

We analyze the fluctuations in the X-ray flux of 20 AGN (mainly Seyfert 1 galaxies) monitored by RXTE and XMM-Newton with a sampling frequency ranging from hours to years, using structure function (SF) analysis. We derive SFs over four orders of magnitude in the time domain (0.03-300 days). Most objects show a characteristic time scale, where the SF flattens or changes slope. For 10 objects with published power-spectral density (PSD) the break time scales in the SF and PSD are similar and show a good correlation. We also find a significant correlation between the SF timescale and the mass of the central black hole, determined for most objects by reverberation mapping.

Steep radio spectra in high-redshift radio galaxies

NASA Technical Reports Server (NTRS)

Krolik, Julian H.; Chen, Wan

1991-01-01

The generic spectrum of an optically thin synchrotron source steepens by 0.5 in spectral index from low frequencies to high whenever the source lifetime is greater than the energy-loss timescale for at least some of the radiating electrons. Three effects tend to decrease the frequency nu(b) of this spectral bend as the source redshift increases: (1) for fixed bend frequency nu* in the rest frame, nu(b) = nu*/(1 + z); (2) losses due to inverse Compton scattering the microwave background rise with redshift as (1 + z) exp 4, so that, for fixed residence time in the radiating region, the energy of the lowest energy electron that can cool falls rapidly with increasing redshift; and (3) if the magnetic field is proportional to the equipartition field and the emitting volume is fixed or slowly varying, flux-limited samples induce a selection effect favoring low nu* at high z because higher redshift sources require higher emissivity to be included in the sample, and hence have stronger implied fields and more rapid synchrotron losses. A combination of these effects may explain the trend observed in the 3CR sample for higher redshift radio galaxies to have steeper spectra, and the successful use of ultrasteep spectrum surveys to locate high-redshift galaxies.

Large Torque Variations in Two Soft Gamma Repeaters

NASA Technical Reports Server (NTRS)

Woods, Peter M.; Kouveliotou, Chryssa; Gogus, Ersin; Finger, Mark H.; Swank, Jean; Markwardt, Craig B.; Hurley, Kevin; vanderKlis, Michiel

2002-01-01

We have monitored the pulse frequencies of the two soft gamma repeaters SGR 1806-20 and SGR 1900+14 through the beginning of year 2001 using primarily Rossi X-Ray Timing Explorer Proportional Counter Array observations. In both sources, we observe large changes in the spin-down torque up to a factor of approximately 4, which persist for several months. Using long-baseline phase-connected timing solutions as well as the overall frequency histories, we construct torque noise power spectra for each SGR (Soft Gamma Repeater). The power spectrum of each source is very red (power-law slope is approximately -3.5). The torque noise power levels are consistent with some accreting systems on timescales of approximately 1 yr, yet the full power spectrum is much steeper in frequency than any known accreting source. To the best of our knowledge, torque noise power spectra with a comparably steep frequency dependence have been seen only in young, glitching radio pulsars (e.g., Vela). The observed changes in spin-down rate do not correlate with burst activity; therefore, the physical mechanisms behind each phenomenon are also likely unrelated. Within the context of the magnetar model, seismic activity can not account for both the bursts and the long-term torque changes unless the seismically active regions are decoupled from one another.

Rapid runoff via shallow throughflow and deeper preferential flow in a boreal catchment underlain by frozen silt (Alaska, USA)

USGS Publications Warehouse

Koch, Joshua C.; Ewing, Stephanie A.; Striegl, Robert G.; McKnight, Diane M.

2013-01-01

In high-latitude catchments where permafrost is present, runoff dynamics are complicated by seasonal active-layer thaw, which may cause a change in the dominant flowpaths as water increasingly contacts mineral soils of low hydraulic conductivity. A 2-year study, conducted in an upland catchment in Alaska (USA) underlain by frozen, well-sorted eolian silt, examined changes in infiltration and runoff with thaw. It was hypothesized that rapid runoff would be maintained by flow through shallow soils during the early summer and deeper preferential flow later in the summer. Seasonal changes in soil moisture, infiltration, and runoff magnitude, location, and chemistry suggest that transport is rapid, even when soils are thawed to their maximum extent. Between June and September, a shift occurred in the location of runoff, consistent with subsurface preferential flow in steep and wet areas. Uranium isotopes suggest that late summer runoff erodes permafrost, indicating that substantial rapid flow may occur along the frozen boundary. Together, throughflow and deep preferential flow may limit upland boreal catchment water and solute storage, and subsequently biogeochemical cycling on seasonal to annual timescales. Deep preferential flow may be important for stream incision, network drainage development, and the release of ancient carbon to ecosystems

Exploring the limits of the ``SNB'' multi-group diffusion nonlocal model

NASA Astrophysics Data System (ADS)

Brodrick, Jonathan; Ridgers, Christopher; Kingham, Robert

2014-10-01

A correct treatment of nonlocal transport in the presence of steep temperature gradients found in laser and inertial fusion plasmas has long been highly desirable over the use of an ad-hoc flux limiter. Therefore, an implementation of the ``SNB'' nonlocal model (G P Schurtz, P D Nicolaï & M Busquet, Phys. Plas. 7, 4238 (2000)) has been benchmarked against a fully-implicit kinetic code: IMPACT. A variety of scenarios, including relaxation of temperature sinusoids and Gaussians in addition to continuous laser heating have been investigated. Results highlight the effect of neglecting electron inertia (∂f1/∂ t) as well as question the feasibility of a nonlocal model that does not continuously track the evolution of the distribution function. Deviations from the Spitzer electric fields used in the model across steep gradients are also investigated. Regimes of validity for such a model are identified and discussed, and possible improvements to the model are suggested.

Scientist's Idealism Vs. User's Realism for Orthorectification of Full Radarsat-2/Compact RCM Polarimetric Data with DSM

NASA Astrophysics Data System (ADS)

Toutin, Thierry; Wang, Huili; Charbonneau, Francois; Schmitt, Carla

2013-08-01

This paper presented two methods for the orthorectification of full/compact polarimetric SAR data: the polarimetric processing is performed in the image space (scientist's idealism) or in the ground space (user's realism) before or after the geometric processing, respectively. Radarsat-2 (R2) fine-quad and simulated very high-resolution RCM data acquired with different look angles over a hilly relief study site were processed using accurate lidar digital surface model. Quantitative evaluations between the two methods as a function of different geometric and radiometric parameters were performed to evaluate the impact during the orthorectification. The results demonstrated that the ground-space method can be safely applied to polarimetric R2 SAR data with an exception with the steep look angles and steep terrain slopes. On the other hand, the ground-space method cannot be applied to simulated compact RCM data due to 17dB noise floor and oversampling.

Diffusion Profiles of Health Beneficial Components from Goji Berry (Lyceum barbarum) Marinated in Alcohol and Their Antioxidant Capacities as Affected by Alcohol Concentration and Steeping Time

PubMed Central

Song, Yang; Xu, Baojun

2013-01-01

The fruit (goji berry) of Lycium barbarum, a traditional Chinese medicine, has been widely used in health diets due to its potential role in the prevention of chronic diseases. One of the most popular applications of goji berry is to make goji wine in China by steeping goji berry in grain liquor. However, how the steeping process affects antioxidant capacities and phytochemicals of goji berry is not yet fully understood. Therefore, to provide scientific data for the utilization of goji berry in the nutraceutical industry, the diffusion rate of betaine, β-carotene, phenolic compounds in goji berry and their antioxidant capacities affected by alcohol concentration and steeping time were determined by UV-Visible spectrophotometer. The results showed that low alcohol concentration (15% or 25%) would promote the diffusion of betaine and increase antioxidant activity, while high concentration (55% or 65%) would generally increase the diffusion of flavonoids and reduce antioxidant activity. The steeping time had no significant effect on the diffusion of phenolic compounds and antioxidant activities. However, all goji berry wine steeped for 14 days with different alcohol concentrations exhibited the highest betaine concentration. Current findings provide useful information for the nutraceutical industries to choose proper steeping time and alcohol concentration to yield desired health promotion components from goji. PMID:28239094

The Occurrence of Ridge-and-Runnel Beach Morphology Associated with Deep-Water Wave Steepness on New York's Ocean Coast

NASA Astrophysics Data System (ADS)

Bokuniewicz, H.; Fallon, K.

2017-12-01

The occurrences of ridge-and-runnels were documented along the ocean shoreline of New York. These ephemeral beach morphologies represent the post-storm recovery period as sand eroded from the subaerial beach makes its way back on shore. Daily images from a camera in East Hampton, NY (40.964;-72.185) were examined to look for the occurrence and duration of ridge-and-runnel events between October 2010 to November 2012 and again from February 2014 to July 2016. Seventy-five ridge-and-runnel events were seen lasting between one to seven days, and representing about 16% of the time. Deep-water wave steepness has long been used as a parameter to determine beach erosion and accretion, because steep waves remove sand from the subaerial beach and deposit it as an offshore bar which remains until waves of low steepness return it. The time series of wave steepness (NOAA Buoy 44017) was found to be dominated by rapid increases to values of about 0.06 followed by gradual decays to about 0.012. Wave steepness is positively correlated to wind speed representing the passage of mesoscale weather systems. These cycles occurred about every five days; when ridge-and runnels occurred, they appeared, on average, 2.7 days after the peak in wave steepness.

Environmental impacts of forest road construction on mountainous terrain

PubMed Central

2013-01-01

Forest roads are the base infrastructure foundation of forestry operations. These roads entail a complex engineering effort because they can cause substantial environmental damage to forests and include a high-cost construction. This study was carried out in four sample sites of Giresun, Trabzon(2) and Artvin Forest Directorate, which is in the Black Sea region of Turkey. The areas have both steep terrain (30-50% gradient) and very steep terrain (51-80% gradient). Bulldozers and hydraulic excavators were determined to be the main machines for forest road construction, causing environmental damage and cross sections in mountainous areas. As a result of this study, the percent damage to forests was determined as follows: on steep terrain, 21% of trees were damaged by excavators and 33% of trees were damaged by bulldozers during forest road construction, and on very steep terrain, 27% of trees were damaged by excavators and 44% of trees were damaged by bulldozers during forest road construction. It was also determined that on steep terrain, when excavators were used, 12.23% less forest area was destroyed compared with when bulldozers were used and 16.13% less area was destroyed by excavators on very steep terrain. In order to reduce the environmental damage on the forest ecosystem, especially in steep terrains, hydraulic excavators should replace bulldozers in forest road construction activities. PMID:23497078

A year-long AGILE observation of Cygnus X-1 in hard spectral state

NASA Astrophysics Data System (ADS)

Del Monte, E.; Feroci, M.; Evangelista, Y.; Costa, E.; Donnarumma, I.; Lapshov, I.; Lazzarotto, F.; Pacciani, L.; Rapisarda, M.; Soffitta, P.; Argan, A.; Barbiellini, G.; Boffelli, F.; Bulgarelli, A.; Caraveo, P.; Cattaneo, P. W.; Chen, A.; D'Ammando, F.; Di Cocco, G.; Fuschino, F.; Galli, M.; Gianotti, F.; Giuliani, A.; Labanti, C.; Lipari, P.; Longo, F.; Marisaldi, M.; Mereghetti, S.; Moretti, E.; Morselli, A.; Pellizzoni, A.; Perotti, F.; Piano, G.; Picozza, P.; Pilia, M.; Prest, M.; Pucella, G.; Rappoldi, A.; Sabatini, S.; Striani, E.; Tavani, M.; Trifoglio, M.; Trois, A.; Vallazza, E.; Vercellone, S.; Vittorini, V.; Zambra, A.; Antonelli, L. A.; Cutini, S.; Pittori, C.; Preger, B.; Santolamazza, P.; Verrecchia, F.; Giommi, P.; Salotti, L.

2010-09-01

Context. Cygnus X-1 (Cyg X-1) is a high mass X-ray binary system, known to be a black hole candidate and one of the brightest sources in the X-ray sky, which shows both variability on all timescales and frequent flares. The source spends most of the time in a hard spectral state, dominated by a power-law emission, with occasional transitions to the soft and intermediate states, where a strong blackbody component emerges. Aims: We present the observation of Cyg X-1 in a hard spectral state performed during the AGILE science verification phase and observing cycle 1 in hard X-rays (with SuperAGILE) and gamma rays (with the gamma ray imaging detector) and lasting for about 160 days with a live time of ~6 Ms. Methods: We investigated the variability of Cyg X-1 in hard X-rays on different timescales, from ~300 s up to one day, and we applied different tools of timing analysis, such as the autocorrelation function, the first-order structure function, and the Lomb-Scargle periodogram, to our data (from SuperAGILE) and to the simultaneous data in soft X-rays (from RXTE/ASM). We concluded our investigation with a search for emission in the energy range above 100 MeV with the maximum likelihood technique. Results: In the hard X-ray band, the flux of Cyg X-1 shows its typical erratic fluctuations on all timescales with variations of about a factor of two that do not significantly affect the shape of the energy spectrum. From the first-order structure function, we find that the X-ray emission of Cyg X-1 is characterized by antipersistence (anticorrelation in the time series, with an increase in the emission likely followed by a decrease), indicative of a negative feedback mechanism at work. In the gamma ray data a statistically significant point-like source at the position of Cyg X-1 is not found, and the upper limit on the flux is 5 × 10-8 ph cm-2 s-1 over the whole observation (160 days). Finally we compared our upper limit in gamma rays with the expectation of various models of the Cyg X-1 emission, both of hadronic and leptonic origin, in the GeV-TeV band. Conclusions: The time history of Cyg X-1 in the hard X-ray band over 13 months (not continuous) is shown. Different analysis tools do not provide fully converging results of the characteristic timescales in the system, suggesting that the timescales found in the structure function are not intrinsic to the physics of the source. While Cyg X-1 is not detected in gamma rays, our upper limit is a factor of two lower than the EGRET one and is compatible with the extrapolation of the flux measured by COMPTEL in the same spectral state.

Radioactive waste management in France: safety demonstration fundamentals.

PubMed

Ouzounian, G; Voinis, S; Boissier, F

2012-01-01

The main challenge in development of the safety case for deep geological disposal is associated with the long periods of time over which high- and intermediate-level long-lived wastes remain hazardous. A wide range of events and processes may occur over hundreds of thousands of years. These events and processes are characterised by specific timescales. For example, the timescale for heat generation is much shorter than any geological timescale. Therefore, to reach a high level of reliability in the safety case, it is essential to have a thorough understanding of the sequence of events and processes likely to occur over the lifetime of the repository. It then becomes possible to assess the capability of the repository to fulfil its safety functions. However, due to the long periods of time and the complexity of the events and processes likely to occur, uncertainties related to all processes, data, and models need to be understood and addressed. Assessment is required over the lifetime of the radionuclides contained in the radioactive waste. Copyright © 2012. Published by Elsevier Ltd.

A Two-Timescale Response to Ozone Depletion: Importance of the Background State

NASA Astrophysics Data System (ADS)

Seviour, W.; Waugh, D.; Gnanadesikan, A.

2015-12-01

It has been recently suggested that the response of Southern Ocean sea-ice extent to stratospheric ozone depletion is time-dependent; that the ocean surface initially cools due to enhanced northward Ekman drift caused by a poleward shift in the eddy-driven jet, and then warms after some time due to upwelling of warm waters from below the mixed layer. It is therefore possible that ozone depletion could act to favor a short-term increase in sea-ice extent. However, many uncertainties remain in understanding this mechanism, with different models showing widely differing time-scales and magnitudes of the response. Here, we analyze an ensemble of coupled model simulations with a step-function ozone perturbation. The two-timescale response is present with an approximately 30 year initial cooling period. The response is further shown to be highly dependent upon the background ocean temperature and salinity stratification, which is influenced by both natural internal variability and the isopycnal eddy mixing parameterization. It is suggested that the majority of inter-model differences in the Southern Ocean response to ozone depletion is caused by differences in stratification.

Bedrock hillslopes to deltas: New insights into landscape mechanics

NASA Astrophysics Data System (ADS)

Lamb, M. P.

2012-12-01

A powerful record of environmental history on Earth and other planets is preserved in landscapes and sedimentary deposits formed by erosion, transport and deposition of sediment. To understand this record and predict future landscape change, we need mechanistic theories for transport processes and morphodynamics. Significant progress has been made to develop and test transport laws in some settings including soil-mantled landscapes and modest gradient alluvial channels where conventional hydraulic and sediment-transport theories apply. Fundamental opportunities exist, however, to explore the physical limits of existing theories and develop new theories at the frontier of our knowledge base. In this presentation, I will describe recent case studies from sediment-source areas to depositional sinks designed to test the limits of existing transport theories and identify transitions in dominant geomorphic processes by pushing to steeper slopes, greater discharges, and dynamic boundary conditions. First, field measurements, laboratory experiments and theory suggest that sediment transport on steep, rocky hillslopes is different than on soil mantled landscapes, and may be controlled by vegetation dams and sediment release following wildfire. Second, laboratory experiments show that grain stability is enhanced in steep mountain channels compared to moderate gradient channels due to the coincident change in the ratio of flow depth to grain size, until the threshold for mass failure is surpassed. Third, field observations and theory indicate that canyons can be cut by extreme floods at rates that exceed typical river-incision rates by many orders of magnitude due to the transition from abrasion to plucking and toppling of jointed rock, with implications for megafloods on Mars. Finally, numerical modeling, laboratory experiments, and field work show that coastal rivers are coupled to their offshore plumes, and that this coupling may determine the size of deltas. These case studies illustrate that relevant processes, from turbulence to tectonics, act over a wide range of spatial and temporal scales. A major future opportunity I see is to integrate topographic and geochronologic constraints on landscape kinematics with field and laboratory experiments on process dynamics to build mechanistic transport theories applicable across human and geomorphic timescales.

Deep 20-GHz survey of the Chandra Deep Field South and SDSS Stripe 82: source catalogue and spectral properties

NASA Astrophysics Data System (ADS)

Franzen, Thomas M. O.; Sadler, Elaine M.; Chhetri, Rajan; Ekers, Ronald D.; Mahony, Elizabeth K.; Murphy, Tara; Norris, Ray P.; Waldram, Elizabeth M.; Whittam, Imogen H.

2014-04-01

We present a source catalogue and first results from a deep, blind radio survey carried out at 20 GHz with the Australia Telescope Compact Array, with follow-up observations at 5.5, 9 and 18 GHz. The Australia Telescope 20 GHz (AT20G) deep pilot survey covers a total area of 5 deg2 in the Chandra Deep Field South and in Stripe 82 of the Sloan Digital Sky Survey. We estimate the survey to be 90 per cent complete above 2.5 mJy. Of the 85 sources detected, 55 per cent have steep spectra (α _{1.4}^{20} < -0.5) and 45 per cent have flat or inverted spectra (α _{1.4}^{20} ≥ -0.5). The steep-spectrum sources tend to have single power-law spectra between 1.4 and 18 GHz, while the spectral indices of the flat- or inverted-spectrum sources tend to steepen with frequency. Among the 18 inverted-spectrum (α _{1.4}^{20} ≥ 0.0) sources, 10 have clearly defined peaks in their spectra with α _{1.4}^{5.5} > 0.15 and α 9^{18} < -0.15. On a 3-yr time-scale, at least 10 sources varied by more than 15 per cent at 20 GHz, showing that variability is still common at the low flux densities probed by the AT20G-deep pilot survey. We find a strong and puzzling shift in the typical spectral index of the 15-20-GHz source population when combining data from the AT20G, Ninth Cambridge and Tenth Cambridge surveys: there is a shift towards a steeper-spectrum population when going from ˜1 Jy to ˜5 mJy, which is followed by a shift back towards a flatter-spectrum population below ˜5 mJy. The 5-GHz source-count model by Jackson & Wall, which only includes contributions from FRI and FRII sources, and star-forming galaxies, does not reproduce the observed flattening of the flat-spectrum counts below ˜5 mJy. It is therefore possible that another population of sources is contributing to this effect.

Lyapounov Functions of Closed Cone Fields: From Conley Theory to Time Functions

NASA Astrophysics Data System (ADS)

Bernard, Patrick; Suhr, Stefan

2018-03-01

We propose a theory "à la Conley" for cone fields using a notion of relaxed orbits based on cone enlargements, in the spirit of space time geometry. We work in the setting of closed (or equivalently semi-continuous) cone fields with singularities. This setting contains (for questions which are parametrization independent such as the existence of Lyapounov functions) the case of continuous vector-fields on manifolds, of differential inclusions, of Lorentzian metrics, and of continuous cone fields. We generalize to this setting the equivalence between stable causality and the existence of temporal functions. We also generalize the equivalence between global hyperbolicity and the existence of a steep temporal function.

Before the School Bell Rings: How a Before-School Physical Activity Program Improves Executive Functions

ERIC Educational Resources Information Center

Hall, Georgia; Poston, Kristen Fay; Harris, Stephanie

2015-01-01

Across the country, school administrators and educators struggle to find time for children to engage in physical activity while still giving them enough time in academic instruction. The steep rise in childhood obesity in the U.S. (National Center for Health Statistics, 2011; Ogden, Carroll, Kit, & Flegal, 2014) suggests that the concern is…

Infiltration and interrill erosion rates after a wildfire in western Montana, USA

Treesearch

Pete Robichaud; Joseph W. Wagenbrenner; Fredrick B. Pierson; Kenneth E. Spaeth; Louise E. Ashmun; Corey A. Moffet

2016-01-01

The 2000 Valley Complex wildfire burned in steep montane forests with ash cap soils in western Montana, USA. The effects of high soil burn severity on forest soil hydrologic function were examined using rainfall simulations (100mmh-1 for 1 h) on 0.5-m2 plots. Infiltration rates, sediment yields and sediment concentrations were compared among three treatments:...

Techniques for establishing vegetation for long-term erosion control on disturbed slopes in Alabama

Treesearch

M. Dougherty; A. Baharanyi; B. Guertal; J. Grace

2010-01-01

One year results from 21 outdoor erosion and sediment control plots constructed in 2008 on a 4:1 slope are presented. The study objectives were to evaluate; 1) the effects of incorporating lime and fertilizer on establishment of bermudagrass on steep slopes, 2) the differences in bermudagrass establishment as a function of temporary covers including wheat straw,...

SPIKE: AI scheduling techniques for Hubble Space Telescope

NASA Astrophysics Data System (ADS)

Johnston, Mark D.

1991-09-01

AI (Artificial Intelligence) scheduling techniques for HST are presented in the form of the viewgraphs. The following subject areas are covered: domain; HST constraint timescales; HTS scheduling; SPIKE overview; SPIKE architecture; constraint representation and reasoning; use of suitability functions by scheduling agent; SPIKE screen example; advantages of suitability function framework; limiting search and constraint propagation; scheduling search; stochastic search; repair methods; implementation; and status.

Psychometrically equivalent bisyllabic words for speech recognition threshold testing in Vietnamese.

PubMed

Harris, Richard W; McPherson, David L; Hanson, Claire M; Eggett, Dennis L

2017-08-01

This study identified, digitally recorded, edited and evaluated 89 bisyllabic Vietnamese words with the goal of identifying homogeneous words that could be used to measure the speech recognition threshold (SRT) in native talkers of Vietnamese. Native male and female talker productions of 89 Vietnamese bisyllabic words were recorded, edited and then presented at intensities ranging from -10 to 20 dBHL. Logistic regression was used to identify the best words for measuring the SRT. Forty-eight words were selected and digitally edited to have 50% intelligibility at a level equal to the mean pure-tone average (PTA) for normally hearing participants (5.2 dBHL). Twenty normally hearing native Vietnamese participants listened to and repeated bisyllabic Vietnamese words at intensities ranging from -10 to 20 dBHL. A total of 48 male and female talker recordings of bisyllabic words with steep psychometric functions (>9.0%/dB) were chosen for the final bisyllabic SRT list. Only words homogeneous with respect to threshold audibility with steep psychometric function slopes were chosen for the final list. Digital recordings of bisyllabic Vietnamese words are now available for use in measuring the SRT for patients whose native language is Vietnamese.

Cooperativity to increase Turing pattern space for synthetic biology.

PubMed

Diambra, Luis; Senthivel, Vivek Raj; Menendez, Diego Barcena; Isalan, Mark

2015-02-20

It is hard to bridge the gap between mathematical formulations and biological implementations of Turing patterns, yet this is necessary for both understanding and engineering these networks with synthetic biology approaches. Here, we model a reaction-diffusion system with two morphogens in a monostable regime, inspired by components that we recently described in a synthetic biology study in mammalian cells.1 The model employs a single promoter to express both the activator and inhibitor genes and produces Turing patterns over large regions of parameter space, using biologically interpretable Hill function reactions. We applied a stability analysis and identified rules for choosing biologically tunable parameter relationships to increase the likelihood of successful patterning. We show how to control Turing pattern sizes and time evolution by manipulating the values for production and degradation relationships. More importantly, our analysis predicts that steep dose-response functions arising from cooperativity are mandatory for Turing patterns. Greater steepness increases parameter space and even reduces the requirement for differential diffusion between activator and inhibitor. These results demonstrate some of the limitations of linear scenarios for reaction-diffusion systems and will help to guide projects to engineer synthetic Turing patterns.

Delineation of preventative landslide buffers along steep streamside slopes in northern California

Treesearch

Jason S. Woodward; David W. Lamphear; Matthew R. House

2012-01-01

Green Diamond Resource Co (GDRCo) applies tree retention buffers to steep slopes along fish bearing (Class I) and non-fish bearing (Class II) streams that are in addition to the standard riparian management zones associated with timber harvest plans. These Steep Streamside Slope (SSS) buffers were designed to reduce the amount of sediment delivering to watercourses as...

Ising model of cardiac thin filament activation with nearest-neighbor cooperative interactions

NASA Technical Reports Server (NTRS)

Rice, John Jeremy; Stolovitzky, Gustavo; Tu, Yuhai; de Tombe, Pieter P.; Bers, D. M. (Principal Investigator)

2003-01-01

We have developed a model of cardiac thin filament activation using an Ising model approach from equilibrium statistical physics. This model explicitly represents nearest-neighbor interactions between 26 troponin/tropomyosin units along a one-dimensional array that represents the cardiac thin filament. With transition rates chosen to match experimental data, the results show that the resulting force-pCa (F-pCa) relations are similar to Hill functions with asymmetries, as seen in experimental data. Specifically, Hill plots showing (log(F/(1-F)) vs. log [Ca]) reveal a steeper slope below the half activation point (Ca(50)) compared with above. Parameter variation studies show interplay of parameters that affect the apparent cooperativity and asymmetry in the F-pCa relations. The model also predicts that Ca binding is uncooperative for low [Ca], becomes steeper near Ca(50), and becomes uncooperative again at higher [Ca]. The steepness near Ca(50) mirrors the steep F-pCa as a result of thermodynamic considerations. The model also predicts that the correlation between troponin/tropomyosin units along the one-dimensional array quickly decays at high and low [Ca], but near Ca(50), high correlation occurs across the whole array. This work provides a simple model that can account for the steepness and shape of F-pCa relations that other models fail to reproduce.

Neutrophil migration under spatially-varying chemoattractant gradient profiles.

PubMed

Halilovic, Iris; Wu, Jiandong; Alexander, Murray; Lin, Francis

2015-01-01

Chemotaxis plays an important role in biological processes such as cancer metastasis, embryogenesis, wound healing, and immune response. Neutrophils are the frontline defenders against invasion of foreign microorganisms into our bodies. To achieve this important immune function, a neutrophil can sense minute chemoattractant concentration differences across its cell body and effectively migrate toward the chemoattractant source. Furthermore, it has been demonstrated in various studies that neutrophils are highly sensitive to changes in the surrounding chemoattractant environments, suggesting the role of a chemotactic memory for processing the complex spatiotemporal chemical guiding signals. Using a microfluidic device, in the present study we characterized neutrophil migration under spatially varying profiles of interleukine-8 gradients, which consist of three spatially ordered regions of a shallow gradient, a steep gradient and a nearly saturated gradient. This design allowed us to examine how neutrophils migrate under different chemoattractant gradient profiles, and how the migratory response is affected when the cell moves from one gradient profile to another in a single experiment. Our results show robust neutrophil chemotaxis in the shallow and steep gradient, but not the saturated gradient. Furthermore, neutrophils display a transition from chemotaxis to flowtaxis when they migrate across the steep gradient interface, and the relative efficiency of this transition depends on the cell's chemotaxis history. Finally, some neutrophils were observed to adjust their morphology to different gradient profiles.

Potential Risk Assessment of Mountain Torrent Disasters on Sloping Fields in China

NASA Astrophysics Data System (ADS)

GAO, X.

2017-12-01

China's sloping fields have the problems of low production and serious soil erosion, and mountain torrent disasters will bring more serious soil and water loss to traditional extensive exploitation of sloping field resources. In this paper, China's sloping fields were classified into three grades, such as slightly steep, steep and very steep grade. According to the geological hazards prevention and control regulation, the historical data of China's mountain torrent disasters were spatially interpolated and divided into five classes, such as extremely low, low, middle, high and extremely high level. And the risk level map of mountain torrents was finished in ArcGIS. By using overlaying analysis on sloping fields and risk level map, the potential risk regionalization map of sloping fields in various slope grades was obtained finally. The results shows that the very steep and steep sloping fields are mainly distributed in the first or second stage terraces in China. With the increase of hazard risk level, the area of sloping fields decreases rapidly and the sloping fields in extremely low and low risk levels of mountain torrents reach 98.9%. With the increase of slope grade, the area of sloping fields in various risk levels also declines sharply. The sloping fields take up approximately 60 65% and 26 30% in slightly steep and steep grade areas separately at different risk level. The risk regionalization map can provide effective information for returning farmland to forests or grassland and reducing water and soil erosion of sloping fields in the future.

Hydraulic properties for interrill erosion on steep slopes using a portable rainfall simulator

NASA Astrophysics Data System (ADS)

Shin, Seung Sook; Hwang, Yoonhee; Deog Park, Sang; Yun, Minu; Park, Sangyeon

2017-04-01

The hydraulic parameters for sheet flow on steep slopes have been not frequently measured because the shallow flow depth and slow flow velocity are difficult to measure. In this study hydraulic values of sheet flow were analyzed to evaluate interrill erosion on steep slopes. A portable rainfall simulator was used to conduct interrill erosion test. The kinetic energy of rainfall simulator was obtained by disdrometer being capable of measuring the drop size distribution and velocity of falling raindrops. The sheet flow velocity was determined by the taken time for a dye transferring fixed points using video images. Surface runoff discharge and sediment yield increased with increase of rainfall intensity and kinetic energy and slope steepness. Especially sediment yield was strongly correlated with sheet flow velocity. The maximum velocity of sheet flow was 2.3cm/s under rainfall intensity of 126.8mm/h and slope steepness of 53.2%. The sheet flow was laminar and subcritical flow as the flow Reynolds number and Froude number are respectively the ranges of 10 22 and 0.05 0.25. The roughness coefficient (Manning's n) for sheet flow on steep slopes was relatively large compared to them on the gentle slope. Keywords: Sheet flow velocity; Rainfall simulator; Interrill erosion; Steep slope This work was supported by the National Research Foundation of Korea(NRF) grant funded by the Korea government(MSIP) (No. 2015R1C1A2A01055469).

North-South precipitation patterns in western North America on interannual-to-decadal timescales

USGS Publications Warehouse

Dettinger, M.D.; Cayan, D.R.; Diaz, Henry F.; Meko, D.M.

1998-01-01

The overall amount of precipitation deposited along the West Coast and western cordillera of North America from 25??to 55??N varies from year to year, and superimposed on this domain-average variability are varying north-south contrasts on timescales from at least interannual to interdecadal. In order to better understand the north-south precipitation contrasts, their interannual and decadal variations are studied in terms of how much they affect overall precipitation amounts and how they are related to large-scale climatic patterns. Spatial empirical orthogonal functions (EOFs) and spatial moments (domain average, central latitude, and latitudinal spread) of zonally averaged precipitation anomalies along the westernmost parts of North America are analyzed, and each is correlated with global sea level pressure (SLP) and sea surface temperature series, on interannual (defined here as 3-7 yr) and decadal (>7 yr) timescales. The interannual band considered here corresponds to timescales that are particularly strong in tropical climate variations and thus is expected to contain much precipitation variability that is related to El Nino-Southern Oscillation; the decadal scale is defined so as to capture the whole range of long-term climatic variations affecting western North America. Zonal EOFs of the interannual and decadal filtered versions of the zonal-precipitation series are remarkably similar. At both timescales, two leading EOFs describe 1) a north-south seesaw of precipitation pivoting near 40??N and 2) variations in precipitation near 40??N, respectively. The amount of overall precipitation variability is only about 10% of the mean and is largely determined by precipitation variations around 40??-45??N and most consistently influenced by nearby circulation patterns; in this sense, domain-average precipitation is closely related to the second EOF. The central latitude and latitudinal spread of precipitation distributions are strongly influenced by precipitation variations in the southern parts of western North America and are closely related to the first EOF. Central latitude of precipitation moves south (north) with tropical warming (cooling) in association with midlatitude western Pacific SLP variations, on both interannual and decadal timescales. Regional patterns and zonal averages of precipitation-sensitive tree-ring series are used to corroborate these patterns and to extend them into the past and appear to share much long- and short-term information with the instrumentally based zonal precipitation EOFs and moments.The overall amount of precipitation deposited along the West Coast and western cordillera of North America from 25?? to 55 ??N varies from year to year, and superimposed on this domain-average variability are varying north-south contrasts on timescales from at least interannual to interdecadal. In order to better understand the north-south precipitation contrasts, their interannual and decadal variations are studied in terms of how much they affect overall precipitation amounts and how they are related to large-scale climatic patterns. Spatial empirical orthogonal functions (EOFs) and spatial moments (domain average, central latitude, and latitudinal spread) of zonally averaged precipitation anomalies along the westernmost parts of North America are analyzed, and each is correlated with global sea level pressure (SLP) and sea surface temperature series, on interannual (defined here as 3-7 yr) and decadal (>7 yr) timescales. The interannual band considered here corresponds to timescales that are particularly strong in tropical climate variations and thus is expected to contain much precipitation variability that is related to El Nino-Southern Oscillation; the decadal scale is defined so as to capture the whole range of long-term climatic variations affecting western North America. Zonal EOFs of the interannual and decadal filtered versions of the zonal-precipitation series are remarkably similar. At both tim

Proportionality between Doppler noise and integrated signal path electron density validated by differenced S-X range

NASA Technical Reports Server (NTRS)

Berman, A. L.

1977-01-01

Observations of Viking differenced S-band/X-band (S-X) range are shown to correlate strongly with Viking Doppler noise. A ratio of proportionality between downlink S-band plasma-induced range error and two-way Doppler noise is calculated. A new parameter (similar to the parameter epsilon which defines the ratio of local electron density fluctuations to mean electron density) is defined as a function of observed data sample interval (Tau) where the time-scale of the observations is 15 Tau. This parameter is interpreted to yield the ratio of net observed phase (or electron density) fluctuations to integrated electron density (in RMS meters/meter). Using this parameter and the thin phase-changing screen approximation, a value for the scale size L is calculated. To be consistent with Doppler noise observations, it is seen necessary for L to be proportional to closest approach distance a, and a strong function of the observed data sample interval, and hence the time-scale of the observations.

A hierarchy of timescales explains distinct effects of local inhibition of primary visual cortex and frontal eye fields

PubMed Central

Cocchi, Luca; Sale, Martin V; L Gollo, Leonardo; Bell, Peter T; Nguyen, Vinh T; Zalesky, Andrew; Breakspear, Michael; Mattingley, Jason B

2016-01-01

Within the primate visual system, areas at lower levels of the cortical hierarchy process basic visual features, whereas those at higher levels, such as the frontal eye fields (FEF), are thought to modulate sensory processes via feedback connections. Despite these functional exchanges during perception, there is little shared activity between early and late visual regions at rest. How interactions emerge between regions encompassing distinct levels of the visual hierarchy remains unknown. Here we combined neuroimaging, non-invasive cortical stimulation and computational modelling to characterize changes in functional interactions across widespread neural networks before and after local inhibition of primary visual cortex or FEF. We found that stimulation of early visual cortex selectively increased feedforward interactions with FEF and extrastriate visual areas, whereas identical stimulation of the FEF decreased feedback interactions with early visual areas. Computational modelling suggests that these opposing effects reflect a fast-slow timescale hierarchy from sensory to association areas. DOI: http://dx.doi.org/10.7554/eLife.15252.001 PMID:27596931

A hierarchy of timescales explains distinct effects of local inhibition of primary visual cortex and frontal eye fields.

PubMed

Cocchi, Luca; Sale, Martin V; L Gollo, Leonardo; Bell, Peter T; Nguyen, Vinh T; Zalesky, Andrew; Breakspear, Michael; Mattingley, Jason B

2016-09-06

Within the primate visual system, areas at lower levels of the cortical hierarchy process basic visual features, whereas those at higher levels, such as the frontal eye fields (FEF), are thought to modulate sensory processes via feedback connections. Despite these functional exchanges during perception, there is little shared activity between early and late visual regions at rest. How interactions emerge between regions encompassing distinct levels of the visual hierarchy remains unknown. Here we combined neuroimaging, non-invasive cortical stimulation and computational modelling to characterize changes in functional interactions across widespread neural networks before and after local inhibition of primary visual cortex or FEF. We found that stimulation of early visual cortex selectively increased feedforward interactions with FEF and extrastriate visual areas, whereas identical stimulation of the FEF decreased feedback interactions with early visual areas. Computational modelling suggests that these opposing effects reflect a fast-slow timescale hierarchy from sensory to association areas.

Comparison of single-ion molecular dynamics in common solvents

NASA Astrophysics Data System (ADS)

Muralidharan, A.; Pratt, L. R.; Chaudhari, M. I.; Rempe, S. B.

2018-06-01

Laying a basis for molecularly specific theory for the mobilities of ions in solutions of practical interest, we report a broad survey of velocity autocorrelation functions (VACFs) of Li+ and PF6- ions in water, ethylene carbonate, propylene carbonate, and acetonitrile solutions. We extract the memory function, γ(t), which characterizes the random forces governing the mobilities of ions. We provide comparisons controlling for the effects of electrolyte concentration and ion-pairing, van der Waals attractive interactions, and solvent molecular characteristics. For the heavier ion (PF6-), velocity relaxations are all similar: negative tail relaxations for the VACF and a clear second relaxation for γ (t ), observed previously also for other molecular ions and with n-pentanol as the solvent. For the light Li+ ion, short time-scale oscillatory behavior masks simple, longer time-scale relaxation of γ (t ). But the corresponding analysis of the solventberg Li+(H2O)4 does conform to the standard picture set by all the PF6- results.

Serotonergic neurons signal reward and punishment on multiple timescales

PubMed Central

Cohen, Jeremiah Y; Amoroso, Mackenzie W; Uchida, Naoshige

2015-01-01

Serotonin's function in the brain is unclear. One challenge in testing the numerous hypotheses about serotonin's function has been observing the activity of identified serotonergic neurons in animals engaged in behavioral tasks. We recorded the activity of dorsal raphe neurons while mice experienced a task in which rewards and punishments varied across blocks of trials. We ‘tagged’ serotonergic neurons with the light-sensitive protein channelrhodopsin-2 and identified them based on their responses to light. We found three main features of serotonergic neuron activity: (1) a large fraction of serotonergic neurons modulated their tonic firing rates over the course of minutes during reward vs punishment blocks; (2) most were phasically excited by punishments; and (3) a subset was phasically excited by reward-predicting cues. By contrast, dopaminergic neurons did not show firing rate changes across blocks of trials. These results suggest that serotonergic neurons signal information about reward and punishment on multiple timescales. DOI: http://dx.doi.org/10.7554/eLife.06346.001 PMID:25714923

Simulating pump-probe photoelectron and absorption spectroscopy on the attosecond timescale with time-dependent density functional theory.

PubMed

De Giovannini, Umberto; Brunetto, Gustavo; Castro, Alberto; Walkenhorst, Jessica; Rubio, Angel

2013-05-10

Molecular absorption and photoelectron spectra can be efficiently predicted with real-time time-dependent density functional theory. We show herein how these techniques can be easily extended to study time-resolved pump-probe experiments, in which a system response (absorption or electron emission) to a probe pulse is measured in an excited state. This simulation tool helps with the interpretation of fast-evolving attosecond time-resolved spectroscopic experiments, in which electronic motion must be followed at its natural timescale. We show how the extra degrees of freedom (pump-pulse duration, intensity, frequency, and time delay), which are absent in a conventional steady-state experiment, provide additional information about electronic structure and dynamics that improve characterization of a system. As an extension of this approach, time-dependent 2D spectroscopy can also be simulated, in principle, for large-scale structures and extended systems. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Microlensing of Relativistic Knots in the Quasar HE 1104-1805 AB

NASA Astrophysics Data System (ADS)

Schechter, Paul L.; Udalski, A.; Szymański, M.; Kubiak, M.; Pietrzyński, G.; Soszyński, I.; Woźniak, P.; Żebruń, K.; Szewczyk, O.; Wyrzykowski, Ł.

2003-02-01

We present 3 years of photometry of the ``Double Hamburger'' lensed quasar, HE 1104-1805 AB, obtained on 102 separate nights using the Optical Gravitational Lensing Experiment 1.3 m telescope. Both the A and B images show variations, but with substantial differences in the light curves at all time delays. At the 310 day delay reported by Wisotzki and collaborators, the difference light curve has an rms amplitude of 0.060 mag. The structure functions for the A and B images are quite different, with image A more than twice as variable as image B (a factor of 4 in structure function) on timescales of less than a month. Adopting microlensing as a working hypothesis for the uncorrelated variability, the short timescale argues for the relativistic motion of one or more components of the source. We argue that the small amplitude of the fluctuations is due to the finite size of the source with respect to the microlenses.

The enhancement of rapidly quenched galaxies in distant clusters at 0.5 < z < 1.0

NASA Astrophysics Data System (ADS)

Socolovsky, Miguel; Almaini, Omar; Hatch, Nina A.; Wild, Vivienne; Maltby, David T.; Hartley, William G.; Simpson, Chris

2018-05-01

We investigate the relationship between environment and galaxy evolution in the redshift range 0.5 < z < 1.0. Galaxy overdensities are selected using a friends-of-friends algorithm, applied to deep photometric data in the Ultra-Deep Survey field. A study of the resulting stellar mass functions reveals clear differences between cluster and field environments, with a strong excess of low-mass rapidly quenched galaxies in cluster environments compared to the field. Cluster environments also show a corresponding deficit of young, low-mass star-forming galaxies, which show a sharp radial decline towards cluster centres. By comparing mass functions and radial distributions, we conclude that young star-forming galaxies are rapidly quenched as they enter overdense environments, becoming post-starburst galaxies before joining the red sequence. Our results also point to the existence of two environmental quenching pathways operating in galaxy clusters, operating on different time-scales. Fast quenching acts on galaxies with high specific star formation rates, operating on time-scales shorter than the cluster dynamical time (<1 Gyr). In contrast, slow quenching affects galaxies with moderate specific star formation rates, regardless of their stellar mass, and acts on longer time-scales (≳ 1 Gyr). Of the cluster galaxies in the stellar mass range 9.0 < log (M/M⊙) < 10.5 quenched during this epoch, we find that 73 per cent were transformed through fast quenching, while the remaining 27 per cent followed the slow quenching route.

Sensitivity of Tropical Cyclone Spinup Time to the Initial Entropy Deficit

NASA Astrophysics Data System (ADS)

Tang, B.; Corbosiero, K. L.; Rios-Berrios, R.; Alland, J.; Berman, J.

2014-12-01

The development timescale of a tropical cyclone from genesis to the start of rapid intensification in an axisymmetric model is hypothesized to be a function of the initial entropy deficit. We run a set of idealized simulations in which the initial entropy deficit between the boundary layer and free troposphere varies from 0 to 100 J kg-1 K-1. The development timescale is measured by changes in the integrated kinetic energy of the low-level vortex. This timescale is inversely related to the mean mass flux during the tropical cyclone gestation period. The mean mass flux, in turn, is a function of the statistics of convective updrafts and downdrafts. Contour frequency by altitude diagrams show that entrainment of dry air into updrafts is predominately responsible for differences in the mass flux between the experiments, while downdrafts play a secondary role. Analyses of the potential and kinetic energy budgets indicate less efficient conversion of available potential energy to kinetic energy in the experiments with higher entropy deficits. Entrainment leads to the loss of buoyancy and the destruction of available potential energy. In the presence of strong downdrafts, there can even be a reversal of the conversion term. Weaker and more radially confined radial inflow results in less convergence of angular momentum in the experiments with higher entropy deficits. The result is a slower vortex spinup and a reduction in steady-state vortex size, despite similar steady-state maximum intensities among the experiments.

A coarse-grained computational model of the nuclear pore complex predicts Phe-Gly nucleoporin dynamics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pulupa, Joan; Rachh, Manas; Tomasini, Michael D.

The phenylalanine-glycine–repeat nucleoporins (FG-Nups), which occupy the lumen of the nuclear pore complex (NPC), are critical for transport between the nucleus and cytosol. Although NPCs differ in composition across species, they are largely conserved in organization and function. Transport through the pore is on the millisecond timescale. Here, to explore the dynamics of nucleoporins on this timescale, we use coarse-grained computational simulations. These simulations generate predictions that can be experimentally tested to distinguish between proposed mechanisms of transport. Our model reflects the conserved structure of the NPC, in which FG-Nup filaments extend into the lumen and anchor along the interiormore » of the channel. The lengths of the filaments in our model are based on the known characteristics of yeast FG-Nups. The FG-repeat sites also bind to each other, and we vary this association over several orders of magnitude and run 100-ms simulations for each value. The autocorrelation functions of the orientation of the simulated FG-Nups are compared with in vivo anisotropy data. We observe that FG-Nups reptate back and forth through the NPC at timescales commensurate with experimental measurements of the speed of cargo transport through the NPC. Our results are consistent with models of transport where FG-Nup filaments are free to move across the central channel of the NPC, possibly informing how cargo might transverse the NPC.« less

Time-dependent shock acceleration of particles. Effect of the time-dependent injection, with application to supernova remnants

NASA Astrophysics Data System (ADS)

Petruk, O.; Kopytko, B.

2016-11-01

Three approaches are considered to solve the equation which describes the time-dependent diffusive shock acceleration of test particles at the non-relativistic shocks. At first, the solution of Drury for the particle distribution function at the shock is generalized to any relation between the acceleration time-scales upstream and downstream and for the time-dependent injection efficiency. Three alternative solutions for the spatial dependence of the distribution function are derived. Then, the two other approaches to solve the time-dependent equation are presented, one of which does not require the Laplace transform. At the end, our more general solution is discussed, with a particular attention to the time-dependent injection in supernova remnants. It is shown that, comparing to the case with the dominant upstream acceleration time-scale, the maximum momentum of accelerated particles shifts towards the smaller momenta with increase of the downstream acceleration time-scale. The time-dependent injection affects the shape of the particle spectrum. In particular, (I) the power-law index is not solely determined by the shock compression, in contrast to the stationary solution; (II) the larger the injection efficiency during the first decades after the supernova explosion, the harder the particle spectrum around the high-energy cutoff at the later times. This is important, in particular, for interpretation of the radio and gamma-ray observations of supernova remnants, as demonstrated on a number of examples.

Computational Validation of a Two-Dimensional Semi-Empirical Model for Inductive Coupling in a Conical Pulsed Inductive Plasma Thruster

NASA Technical Reports Server (NTRS)

Hallock, Ashley K.; Polzin, Kurt A.

2011-01-01

A two-dimensional semi-empirical model of pulsed inductive thrust efficiency is developed to predict the effect of such a geometry on thrust efficiency. The model includes electromagnetic and gas-dynamic forces but excludes energy conversion from radial motion to axial motion, with the intention of characterizing thrust efficiency loss mechanisms that result from a conical versus a at inductive coil geometry. The range of conical pulsed inductive thruster geometries to which this model can be applied is explored with the use of finite element analysis. A semi-empirical relation for inductance as a function of current sheet radial and axial position is the limiting feature of the model, restricting the applicability as a function of half cone angle to a range from ten degrees to about 60 degrees. The model is nondimensionalized, yielding a set of dimensionless performance scaling parameters. Results of the model indicate that radial current sheet motion changes the axial dynamic impedance parameter at which thrust efficiency is maximized. This shift indicates that when radial current sheet motion is permitted in the model longer characteristic circuit timescales are more efficient, which can be attributed to a lower current sheet axial velocity as the plasma more rapidly decouples from the coil through radial motion. Thrust efficiency is shown to increase monotonically for decreasing values of the radial dynamic impedance parameter. This trend indicates that to maximize the radial decoupling timescale should be long compared to the characteristic circuit timescale.

A coarse-grained computational model of the nuclear pore complex predicts Phe-Gly nucleoporin dynamics

DOE PAGES

Pulupa, Joan; Rachh, Manas; Tomasini, Michael D.; ...

2017-09-08

The phenylalanine-glycine–repeat nucleoporins (FG-Nups), which occupy the lumen of the nuclear pore complex (NPC), are critical for transport between the nucleus and cytosol. Although NPCs differ in composition across species, they are largely conserved in organization and function. Transport through the pore is on the millisecond timescale. Here, to explore the dynamics of nucleoporins on this timescale, we use coarse-grained computational simulations. These simulations generate predictions that can be experimentally tested to distinguish between proposed mechanisms of transport. Our model reflects the conserved structure of the NPC, in which FG-Nup filaments extend into the lumen and anchor along the interiormore » of the channel. The lengths of the filaments in our model are based on the known characteristics of yeast FG-Nups. The FG-repeat sites also bind to each other, and we vary this association over several orders of magnitude and run 100-ms simulations for each value. The autocorrelation functions of the orientation of the simulated FG-Nups are compared with in vivo anisotropy data. We observe that FG-Nups reptate back and forth through the NPC at timescales commensurate with experimental measurements of the speed of cargo transport through the NPC. Our results are consistent with models of transport where FG-Nup filaments are free to move across the central channel of the NPC, possibly informing how cargo might transverse the NPC.« less

Response of integrate-and-fire neurons to noisy inputs filtered by synapses with arbitrary timescales: firing rate and correlations.

PubMed

Moreno-Bote, Rubén; Parga, Néstor

2010-06-01

Delivery of neurotransmitter produces on a synapse a current that flows through the membrane and gets transmitted into the soma of the neuron, where it is integrated. The decay time of the current depends on the synaptic receptor's type and ranges from a few (e.g., AMPA receptors) to a few hundred milliseconds (e.g., NMDA receptors). The role of the variety of synaptic timescales, several of them coexisting in the same neuron, is at present not understood. A prime question to answer is which is the effect of temporal filtering at different timescales of the incoming spike trains on the neuron's response. Here, based on our previous work on linear synaptic filtering, we build a general theory for the stationary firing response of integrate-and-fire (IF) neurons receiving stochastic inputs filtered by one, two, or multiple synaptic channels, each characterized by an arbitrary timescale. The formalism applies to arbitrary IF model neurons and arbitrary forms of input noise (i.e., not required to be gaussian or to have small amplitude), as well as to any form of synaptic filtering (linear or nonlinear). The theory determines with exact analytical expressions the firing rate of an IF neuron for long synaptic time constants using the adiabatic approach. The correlated spiking (cross-correlations function) of two neurons receiving common as well as independent sources of noise is also described. The theory is illustrated using leaky, quadratic, and noise-thresholded IF neurons. Although the adiabatic approach is exact when at least one of the synaptic timescales is long, it provides a good prediction of the firing rate even when the timescales of the synapses are comparable to that of the leak of the neuron; it is not required that the synaptic time constants are longer than the mean interspike intervals or that the noise has small variance. The distribution of the potential for general IF neurons is also characterized. Our results provide powerful analytical tools that can allow a quantitative description of the dynamics of neuronal networks with realistic synaptic dynamics.

Characterizing and understanding the climatic determinism of high- to low-frequency variations in precipitation in northwestern France using a coupled wavelet multiresolution/statistical downscaling approach

NASA Astrophysics Data System (ADS)

Massei, Nicolas; Dieppois, Bastien; Hannah, David; Lavers, David; Fossa, Manuel; Laignel, Benoit; Debret, Maxime

2017-04-01

Geophysical signals oscillate over several time-scales that explain different amount of their overall variability and may be related to different physical processes. Characterizing and understanding such variabilities in hydrological variations and investigating their determinism is one important issue in a context of climate change, as these variabilities can be occasionally superimposed to long-term trend possibly due to climate change. It is also important to refine our understanding of time-scale dependent linkages between large-scale climatic variations and hydrological responses on the regional or local-scale. Here we investigate such links by conducting a wavelet multiresolution statistical dowscaling approach of precipitation in northwestern France (Seine river catchment) over 1950-2016 using sea level pressure (SLP) and sea surface temperature (SST) as indicators of atmospheric and oceanic circulations, respectively. Previous results demonstrated that including multiresolution decomposition in a statistical downscaling model (within a so-called multiresolution ESD model) using SLP as large-scale predictor greatly improved simulation of low-frequency, i.e. interannual to interdecadal, fluctuations observed in precipitation. Building on these results, continuous wavelet transform of simulated precipiation using multiresolution ESD confirmed the good performance of the model to better explain variability at all time-scales. A sensitivity analysis of the model to the choice of the scale and wavelet function used was also tested. It appeared that whatever the wavelet used, the model performed similarly. The spatial patterns of SLP found as the best predictors for all time-scales, which resulted from the wavelet decomposition, revealed different structures according to time-scale, showing possible different determinisms. More particularly, some low-frequency components ( 3.2-yr and 19.3-yr) showed a much wide-spread spatial extentsion across the Atlantic. Moreover, in accordance with other previous studies, the wavelet components detected in SLP and precipitation on interannual to interdecadal time-scales could be interpreted in terms of influence of the Gulf-Stream oceanic front on atmospheric circulation. Current works are now conducted including SST over the Atlantic in order to get further insights into this mechanism.

Force spectroscopy of biomolecular folding and binding: theory meets experiment

NASA Astrophysics Data System (ADS)

Dudko, Olga

2015-03-01

Conformational transitions in biological macromolecules usually serve as the mechanism that brings biomolecules into their working shape and enables their biological function. Single-molecule force spectroscopy probes conformational transitions by applying force to individual macromolecules and recording their response, or ``mechanical fingerprints,'' in the form of force-extension curves. However, how can we decode these fingerprints so that they reveal the kinetic barriers and the associated timescales of a biological process? I will present an analytical theory of the mechanical fingerprints of macromolecules. The theory is suitable for decoding such fingerprints to extract the barriers and timescales. The application of the theory will be illustrated through recent studies on protein-DNA interactions and the receptor-ligand complexes involved in blood clot formation.

Evidence of Dynamic Crustal Deformation in Tohoku, Japan, From Time-Varying Receiver Functions

NASA Astrophysics Data System (ADS)

Porritt, R. W.; Yoshioka, S.

2017-10-01

Temporal variation of crustal structure is key to our understanding of Earth processes on human timescales. Often, we expect that the most significant structural variations are caused by strong ground shaking associated with large earthquakes, and recent studies seem to confirm this. Here we test the possibility of using P receiver functions (PRF) to isolate structural variations over time. Synthetic receiver function tests indicate that structural variation could produce PRF changes on the same order of magnitude as random noise or contamination by local earthquakes. Nonetheless, we find significant variability in observed receiver functions over time at several stations located in northeastern Honshu. Immediately following the Tohoku-oki earthquake, we observe high PRF variation clustering spatially, especially in two regions near the beginning and end of the rupture plane. Due to the depth sensitivity of PRF and the timescales over which this variability is observed, we infer this effect is primarily due to fluid migration in volcanic regions and shear stress/strength reorganization. While the noise levels in PRF are high for this type of analysis, by sampling small data sets, the computational cost is lower than other methods, such as ambient noise, thereby making PRF a useful tool for estimating temporal variations in crustal structure.

The Steep Nekhoroshev's Theorem

NASA Astrophysics Data System (ADS)

Guzzo, M.; Chierchia, L.; Benettin, G.

2016-03-01

Revising Nekhoroshev's geometry of resonances, we provide a fully constructive and quantitative proof of Nekhoroshev's theorem for steep Hamiltonian systems proving, in particular, that the exponential stability exponent can be taken to be {1/(2nα_1\\cdotsα_{n-2}}) ({α_i}'s being Nekhoroshev's steepness indices and {n ≥ 3} the number of degrees of freedom). On the base of a heuristic argument, we conjecture that the new stability exponent is optimal.

Characteristics of the Roof Behaviors and Mine Pressure Manifestations During the Mining of Steep Coal Seam

NASA Astrophysics Data System (ADS)

Hong-Sheng, Tu; Shi-Hao, Tu; Cun, Zhang; Lei, Zhang; Xiao-Gang, Zhang

2017-12-01

A steep seam similar simulation system was developed based on the geological conditions of a steep coal seam in the Xintie Coal Mine. Basing on similar simulation, together with theoretical analysis and field measurement, an in-depth study was conducted to characterize the fracture and stability of the roof of steep working face and calculate the width of the region backfilled with gangue in the goaf. The results showed that, as mining progressed, the immediate roof of the steep face fell upon the goaf and backfilled its lower part due to gravity. As a result, the roof in the lower part had higher stability than the roof in the upper part of the working face. The deformation and fracture of main roof mainly occurred in the upper part of the working face; the fractured main roof then formed a "voussoir beam" structure in the strata's dip direction, which was subjected to the slip- and deformation-induced instability. The stability analysis indicated that, when the dip angle increased, the rock masses had greater capacity to withstand slip-induced instability but smaller capacity to withstand deformation-induced instability. Finally, the field measurement of the forces exerted on the hydraulic supports proved the characteristics of the roof's behaviors during the mining of a steep seam.

Topographic controls on pyroclastic density current dynamics: Insight from 18 May 1980 deposits at Mount St. Helens, Washington (USA)

NASA Astrophysics Data System (ADS)

Brand, Brittany D.; Bendaña, Sylvana; Self, Stephen; Pollock, Nicholas

2016-07-01

Our ability to interpret the deposits of pyroclastic density currents (PDCs) is critical for understanding the transport and depositional processes that control PDC dynamics. This paper focuses on the influence of slope on flow dynamics and criticality as recorded in PDC deposits from the 18 May 1980 eruption of Mt. St. Helens (USA). PDC deposits are found along the steep flanks (10°-30°) and across the pumice plain ( 5°) up to 8 km north of the volcano. Granulometry, componentry and descriptions of depositional characteristics (e.g., bedform morphology) are recorded with distance from source. The pumice plain deposits are primarily thick (3-12 m), massive and poorly-sorted, and represent deposition from a series of concentrated PDCs. By contrast, the steep flank deposits are stratified to cross-stratified, suggesting deposition from PDCs where turbulence strongly influenced transport and depositional processes. We propose that acceleration of the concentrated PDCs along the steep flanks resulted in thinning of the concentrated, basal region of the current(s). Enhanced entrainment of ambient air, and autofluidization from upward fluxes of air from substrate interstices and plunging breakers across rugged, irregular topography further inflated the currents to the point that the overriding turbulent region strongly influenced transport and depositional mechanisms. Acceleration in combination with partial confinement in slot canyons and high surface roughness would also increase basal shear stress, further promoting shear and traction transport in the basal region of the current. Conditions along the steep flank resulted in supercritical flow, as recorded by regressive bedforms, which gradually transitioned to subcritical flow downstream as the concentrated basal region thickness increased as a function of decreasing slope and flow energy. We also find that (1) PDCs were erosive into the underlying granular substrate along high slopes (> 25°) where currents were partially confined in steep slot canyons, suggesting that basal shear stress is an important control on erosive capacity, and (2) bedform amplitude, wavelength and the presence of regressive bedforms increase with increasing slope and proximity to source along the steep flank, suggesting a link between bedform morphology, flow velocity, and flow criticality. While our results indicate that slope and irregular topography strongly influence PDC dynamics, criticality and erosive capacity, the influence of these conditions on ultimate flow runout distance is unclear. The work here also highlights the issue that relationships between the controls on bedform size and morphology in density stratified flows remain poorly constrained, limiting our ability to extract important information about the currents that produced them. These final two points warrant further exploration through the combination of field, experimental and numerical approaches.

Testing the Validity of Local Flux Laws in an Experimental Eroding Landscape

NASA Astrophysics Data System (ADS)

Sweeney, K. E.; Roering, J. J.; Ellis, C.

2015-12-01

Linking sediment transport to landscape evolution is fundamental to interpreting climate and tectonic signals from topography and sedimentary deposits. Most geomorphic process laws consist of simple continuum relationships between sediment flux and local topography. However, recent work has shown that nonlocal formulations, whereby sediment flux depends on upslope conditions, are more accurate descriptions of sediment motion, particularly in steep topography. Discriminating between local and nonlocal processes in natural landscapes is complicated by the scarcity of high-resolution topographic data and by the difficulty of measuring sediment flux. To test the validity of local formulations of sediment transport, we use an experimental erosive landscape that combines disturbance-driven, diffusive sediment transport and surface runoff. We conducted our experiments in the eXperimental Landscape Model at St. Anthony Falls Laboratory a 0.5 x 0.5 m test flume filled with crystalline silica (D50 = 30μ) mixed with water to increase cohesion and preclude surface infiltration. Topography is measured with a sheet laser scanner; total sediment flux is tracked with a series of load cells. We simulate uplift (relative baselevel fall) by dropping two parallel weirs at the edges of the experiment. Diffusive sediment transport in our experiments is driven by rainsplash from a constant head drip tank fitted with 625 blunt needles of fixed diameter; sediment is mobilized both through drop impact and the subsequent runoff of the drops. To drive advective transport, we produce surface runoff via a ring of misters that produce droplets that are too small to disturb the sediment surface on impact. Using the results from five experiments that systematically vary the time of drip box rainfall relative to misting rainfall, we calculate local erosion in our experiments by differencing successive time-slices of topography and test whether these patterns are related to local topographic metrics. By examining these patterns over different timescales, we are able to assess whether there is a signature of nonlocal transport in long-term topographic evolution or if, instead, local formulations are appropriate over timescales much greater than individual transport events.

Thermal preconditioning of mountain permafrost towards instability

NASA Astrophysics Data System (ADS)

Hauck, Christian; Etzelmüller, Bernd; Hilbich, Christin; Isaksen, Ketil; Mollaret, Coline; Pellet, Cécile; Westermann, Sebastian

2017-04-01

Warming permafrost has been detected worldwide in recent years and is projected to continue during the next century as shown in many modelling studies from the polar and mountain regions. In mountain regions, this can lead to potentially hazardous impacts on short time-scales by an increased tendency for slope instabilities. However, the time scale of permafrost thaw and the role of the ice content for determining the strength and rate of permafrost warming and degradation (= development of talik) are still unclear, especially in highly heterogeneous terrain. Observations of permafrost temperatures near the freezing point show complex inter-annual responses to climate forcing due to latent heat effects during thawing and the influence of the snow-cover, which is formed and modulated by highly non-linear processes itself. These effects are complicated by 3-dimensional hydrological processes and interactions between snow melt, infiltration and drainage which may also play an important role in the triggering of mass movements in steep permafrost slopes. In this contribution we demonstrate for the first time a preconditioning effect within near-surface layers in mountain permafrost that causes non-linear degradation and accelerates permafrost thaw. We hypothesise that an extreme regional or global temperature anomaly, such as the Central European summers 2003 and 2015 or the Northern European summers 2006 and 2014, will enhance permafrost degradation if the active layer and the top of the permafrost layer are already preconditioned, i.e. have reduced latent heat content. This preconditioning can already be effectuated by a singular warm year, leading to exceptionally strong melting of the ground ice in the near-surface layers. On sloping terrain and in a context of quasi-continuous atmospheric warming, this ice-loss can be considered as irreversible, as a large part of the melted water will drain/evaporate during the process, and the build-up of an equivalent amount of ice in following cold years does not happen on similar time-scales as the melting. Joint thermal and geophysical observations from permafrost sites in the Swiss Alps and Scandinavia suggest that the above process applies mostly to sites with low to intermediate ice contents, where singular anomalies can lead to sustained ice loss even at larger depths.

Inhibition linearizes firing rate responses in human motor units: implications for the role of persistent inward currents.

PubMed

Revill, Ann L; Fuglevand, Andrew J

2017-01-01

Motor neurons are the output neurons of the central nervous system and are responsible for controlling muscle contraction. When initially activated during voluntary contraction, firing rates of motor neurons increase steeply but then level out at modest rates. Activation of an intrinsic source of excitatory current at recruitment onset may underlie the initial steep increase in firing rate in motor neurons. We attempted to disable this intrinsic excitatory current by artificially activating an inhibitory reflex. When motor neuron activity was recorded while the inhibitory reflex was engaged, firing rates no longer increased steeply, suggesting that the intrinsic excitatory current was probably responsible for the initial sharp rise in motor neuron firing rate. During graded isometric contractions, motor unit (MU) firing rates increase steeply upon recruitment but then level off at modest rates even though muscle force continues to increase. The mechanisms underlying such firing behaviour are not known although activation of persistent inward currents (PICs) might be involved. PICs are intrinsic, voltage-dependent currents that activate strongly when motor neurons (MNs) are first recruited. Such activation might cause a sharp escalation in depolarizing current and underlie the steep initial rise in MU firing rate. Because PICs can be disabled with synaptic inhibition, we hypothesized that artificial activation of an inhibitory pathway might curb this initial steep rise in firing rate. To test this, human subjects performed slow triangular ramp contractions of the ankle dorsiflexors in the absence and presence of tonic synaptic inhibition delivered to tibialis anterior (TA) MNs by sural nerve stimulation. Firing rate profiles (expressed as a function of contraction force) of TA MUs recorded during these tasks were compared for control and stimulation conditions. Under control conditions, during the ascending phase of the triangular contractions, 93% of the firing rate profiles were best fitted by rising exponential functions. With stimulation, however, firing rate profiles were best fitted with linear functions or with less steeply rising exponentials. Firing rate profiles for the descending phases of the contractions were best fitted with linear functions for both control and stimulation conditions. These results seem consistent with the idea that PICs contribute to non-linear firing rate profiles during ascending but not descending phases of contractions. © 2016 The Authors. The Journal of Physiology © 2016 The Physiological Society.

Installation Restoration Program Preliminary Assessment Bear Creek Radio Relay Station, Alaska

DTIC Science & Technology

1989-04-01

Cryachrepts, very gravelly, hilly to steep - Histic Pergelic Cryaquepts, loamy, nearly to rolling association. This association is extensive on hilly...loam. On steep slopes, these soils are only 20 to 40 inches deep over bedrock. 3 Histic Pergelic Cryaquepts, loamy, nearly level to rolling, make up 25...usually 10 to 20 inches below the peaty surface. 3 Histic Pergelic Cryaquepts, very gravelly, hilly to steep, compose 10 percent of this association. These

Turbulence Simulation of Laboratory Wind-Wave Interaction in High Winds and Upscaling to Ocean Conditions

DTIC Science & Technology

2016-12-22

investigated air-sea fluxes characterized by strong air flow separation over a very steep wave field. We first investigated propagating steep wave...mechanisms for flow separation over rigid surfaces compared with unsteady surfaces with a boundary slip velocity. We investigated passive scalar fluxes. In...turbulent flow over steep stationary roughness, the primary mechanism for momentum flux is via pressure drag resulting from flow separation. However

Universal entanglement timescale for Rényi entropies

NASA Astrophysics Data System (ADS)

Cresswell, Jesse C.

2018-02-01

Recently it was shown that the growth of entanglement in an initially separable state, as measured by the purity of subsystems, can be characterized by a timescale that takes a universal form for any Hamiltonian. We show that the same timescale governs the growth of entanglement for all Rényi entropies. Since the family of Rényi entropies completely characterizes the entanglement of a pure bipartite state, our timescale is a universal feature of bipartite entanglement. The timescale depends only on the interaction Hamiltonian and the initial state.

Environmental factors controlling forest evapotranspiration and surface conductance on a multi-temporal scale in growing seasons of a Siberian larch forest

NASA Astrophysics Data System (ADS)

Yoshida, Megumi; Ohta, Takeshi; Kotani, Ayumi; Maximov, Trofim

2010-12-01

SummaryThe water and energy fluxes in forests fluctuate on different temporal scales, reflecting the impact of environmental factors. We examined the temporal fluctuation of the turbulent fluxes, surface conductance ( Gs), and four environmental factors (photosynthetic photon flux density [ Q], vapour pressure deficit [ D], air temperature [ T], and volumetric soil water content [ θ]) in a Siberian larch forest, using wavelet power spectra. The responses of the latent heat flux ( λE) and Gs to the environmental factors were analysed using the wavelet scale-wise correlation coefficient (SWCC) on multiple temporal scales. The observation site is characterised by underlying permafrost and a relatively short growing season. Analysis was conducted from May to September in each of 8 years during 1998-2007. The relationships between Gs and the environmental factors were evaluated with restrictive functions of a Jarvis-type surface conductance model because Gs usually has non-linear relationships to ambient factors. According to the power spectra of each factor, the largest variation was seen on a diurnal timescale for λE, the sensible heat flux ( H), Gs, and Q, whereas D and T fluctuated from diurnal to inter-seasonal timescales, and θ varied significantly over periods longer than the inter-seasonal timescales. The SWCC indicated that λE and Gs respond differently to the same ambient factors due to their respective processes; namely, λE is affected by both atmospheric demand and land surface regulation, whereas Gs is affected only by the latter. λE correlated well with Q at all timescales, as well as with D and T on intra-seasonal to interannual scales and with θ on inter-seasonal to interannual timescales. The SWCC of Gs and Q showed two peaks, on diurnal and inter-seasonal to interannual timescales, reflecting the physiological processes of plants, and D affected Gs only on an intra-seasonal timescale, which is related to meteorological changes. T and θ regulated Gs only on inter-seasonal to interannual scales. These SWCC results for D and θ roughly match previous findings in Siberia. The SWCC also suggested that the recent extremely high soil water has damaged the ecosystem of the eastern Siberian forest. Neither λE nor Gs followed the high θ in the last few years, although the richer soil moisture enhanced them on a long-term temporal scale under the usual soil moisture condition in Siberia.

Time Evolution of the Giant Molecular Cloud Mass Functions across Galactic Disks

NASA Astrophysics Data System (ADS)

Kobayashi, Masato I. N.; Inutsuka, Shu-Ichiro; Kobayashi, Hiroshi; Hasegawa, Kenji

2017-01-01

We formulate and conduct the time-integration of time evolution equation for the giant molecular cloud mass function (GMCMF) including the cloud-cloud collision (CCC) effect. Our results show that the CCC effect is only limited in the massive-end of the GMCMF and indicate that future high resolution and sensitivity radio observations may constrain giant molecular cloud (GMC) timescales by observing the GMCMF slope in the lower mass regime.

Bridging the Timescales of Single-Cell and Population Dynamics

NASA Astrophysics Data System (ADS)

Jafarpour, Farshid; Wright, Charles S.; Gudjonson, Herman; Riebling, Jedidiah; Dawson, Emma; Lo, Klevin; Fiebig, Aretha; Crosson, Sean; Dinner, Aaron R.; Iyer-Biswas, Srividya

2018-04-01

How are granular details of stochastic growth and division of individual cells reflected in smooth deterministic growth of population numbers? We provide an integrated, multiscale perspective of microbial growth dynamics by formulating a data-validated theoretical framework that accounts for observables at both single-cell and population scales. We derive exact analytical complete time-dependent solutions to cell-age distributions and population growth rates as functionals of the underlying interdivision time distributions, for symmetric and asymmetric cell division. These results provide insights into the surprising implications of stochastic single-cell dynamics for population growth. Using our results for asymmetric division, we deduce the time to transition from the reproductively quiescent (swarmer) to the replication-competent (stalked) stage of the Caulobacter crescentus life cycle. Remarkably, population numbers can spontaneously oscillate with time. We elucidate the physics leading to these population oscillations. For C. crescentus cells, we show that a simple measurement of the population growth rate, for a given growth condition, is sufficient to characterize the condition-specific cellular unit of time and, thus, yields the mean (single-cell) growth and division timescales, fluctuations in cell division times, the cell-age distribution, and the quiescence timescale.

Watching hydrogen-bond dynamics in a β-turn by transient two-dimensional infrared spectroscopy

NASA Astrophysics Data System (ADS)

Kolano, Christoph; Helbing, Jan; Kozinski, Mariusz; Sander, Wolfram; Hamm, Peter

2006-11-01

X-ray crystallography and nuclear magnetic resonance measurements provide us with atomically resolved structures of an ever-growing number of biomolecules. These static structural snapshots are important to our understanding of biomolecular function, but real biomolecules are dynamic entities that often exploit conformational changes and transient molecular interactions to perform their tasks. Nuclear magnetic resonance methods can follow such structural changes, but only on millisecond timescales under non-equilibrium conditions. Time-resolved X-ray crystallography has recently been used to monitor the photodissociation of CO from myoglobin on a subnanosecond timescale, yet remains challenging to apply more widely. In contrast, two-dimensional infrared spectroscopy, which maps vibrational coupling between molecular groups and hence their relative positions and orientations, is now routinely used to study equilibrium processes on picosecond timescales. Here we show that the extension of this method into the non-equilibrium regime allows us to observe in real time in a short peptide the weakening of an intramolecular hydrogen bond and concomitant opening of a β-turn. We find that the rate of this process is two orders of magnitude faster than the `folding speed limit' established for contact formation between protein side chains.

A Two-Timescale Response of the Southern Ocean to Ozone Depletion: Importance of the Background State

NASA Astrophysics Data System (ADS)

Seviour, W.; Waugh, D.; Gnanadesikan, A.

2016-02-01

It has been recently suggested that the response of Southern Ocean sea-ice extent to stratospheric ozone depletion is time-dependent; that the ocean surface initially cools due to enhanced northward Ekman drift caused by a poleward shift in the eddy-driven jet, and then warms after some time due to upwelling of warm waters from below the mixed layer. It is therefore possible that ozone depletion could act to favor a short-term increase in sea-ice extent. However, many uncertainties remain in understanding this mechanism, with different models showing widely differing time-scales and magnitudes of the response. Here, we analyze an ensemble of coupled model simulations with a step-function ozone perturbation. The two-timescale response is present with an approximately 30 year initial cooling period. The response is further shown to be highly dependent upon the background ocean temperature and salinity stratification, which is influenced by both natural internal variability and the isopycnal eddy mixing parameterization. It is suggested that the majority of inter-model differences in the Southern Ocean response to ozone depletion are caused by differences in stratification.

The luminosity function for different morphological types in the CfA Redshift Survey

NASA Technical Reports Server (NTRS)

Marzke, Ronald O.; Geller, Margaret J.; Huchra, John P.; Corwin, Harold G., Jr.

1994-01-01

We derive the luminosity function for different morphological types in the original CfA Redshift Survey (CfA1) and in the first two slices of the CfA Redshift Survey Extension (CfA2). CfA1 is a complete sample containing 2397 galaxies distributed over 2.7 steradians with m(sub z) less than or equal 14.5. The first two complete slices of CfA2 contain 1862 galaxies distributed over 0.42 steradians with m(sub z)=15.5. The shapes of the E-S0 and spiral luminosity functions (LF) are indistinguishable. We do not confirm the steeply decreasing faint end in the E-S0 luminosity function found by Loveday et al. for an independent sample in the southern hemisphere. We demonstrate that incomplete classification in deep redshift surveys can lead to underestimates of the faint end of the elliptical luminosity function and could be partially responsible for the difference between the CfA survey and other local field surveys. The faint end of the LF for the Magellanic spirals and irregulars is very steep. The Sm-Im luminosity function is well fit by a Schechter function with M*=-18.79, alpha=-1.87, and phi*=0.6x10(exp -3) for M(sub z) less than or equal to -13. These galaxies are largely responsible for the excess at the faint end of the general CfA luminosity function. The abundance of intrinsically faint, blue galaxies nearby affects the interpretation of deep number counts. The dwarf population increases the expected counts at B=25 in a no-evolution, q(sub 0)=0.05 model by a factor of two over standard no-evolution estimates. These dwarfs change the expected median redshift in deep redshift surveys by less than 10 percent . Thus the steep Sm-Im LF may contribute to the reconciliation of deep number counts with deep redshift surveys.

Rainfall and sheet power model for interrill erosion in steep slope

NASA Astrophysics Data System (ADS)

Shin, Seung Sook; Deog Park, Sand; Nam, Myeong Jun

2015-04-01

The two-phase process of interrill erosion consist of the splash and detachment of individual particles from soil mass by impact of raindrops and the transport by erosive running water. Most experimental results showed that the effect of interaction between rainfall impact and surface runoff increases soil erosion in low or gentle slope. Especially, the combination of rain splash and sheet flow is the dominant runoff and erosion mechanism occurring on most steep hillslopes. In this study, a rainfall simulation was conducted to evaluate interrill erosion in steep slope with cover or non-cover. The kinetic energy of raindrops of rainfall simulator was measured by disdrometer used to measure the drop size distribution and velocity of falling raindrops and showed about 0.563 rate of that calculated from empirical equation between rainfall kinetic energy and rainfall intensity. Surface and subsurface runoff and sediment yield depended on rainfall intensity, gradient of slope, and existence of cover. Sediment from steep plots under rainfall simulator is greatly reduced by existence of the strip cover that the kinetic energy of raindrop approximates to zero. Soil erosion in steep slope with non-cover was nearly 4.93 times of that measured in plots with strip cover although runoff was only 1.82 times. The equation of a rainfall and sheet power was used to evaluate sediment yields in steep slope with cover or non-cover. The power model successfully explained physical processes for interrill erosion that combination of raindrop impact and sheet flow increases greatly soil erosion in steep slope. This research was supported by Basic Science Research Program through the National Research Foundation of Korea(NRF) funded by the Ministry of Education, Science and Technology(No. 2013R1A1A3011962).

Building a Bridge to Deep Time: Sedimentary Systems Across Timescales

NASA Astrophysics Data System (ADS)

Romans, B.; Castelltort, S.; Covault, J. A.; Walsh, J. P.

2013-12-01

It is increasingly important to understand the complex and interdependent processes associated with sediment production, transport, and deposition at timescales relevant to civilization (annual to millennial). However, predicting the response of sedimentary systems to global environmental change across a range of timescales remains a significant challenge. For example, a significant increase in global average temperature at the Paleocene-Eocene boundary (55.8 Ma) is interpreted to have occurred over millennial timescales; however, the specific response of sedimentary systems (e.g., timing and magnitude of sediment flux variability in river systems) to that forcing is debated. Thus, using such environmental perturbations recorded in sedimentary archives as analogs for ongoing/future global change requires improved approaches to bridging across time. Additionally, the ability to bridge timescales is critical for addressing other questions about sedimentary system behavior, including signal propagation and signal versus ';noise' in the record. The geologic record provides information that can be used to develop a comprehensive understanding of process-response behavior at multiple timescales. The geomorphic ';snapshot' of present-day erosional and depositional landscapes can be examined to reconstruct the history of processes that created the observable configurations. Direct measurement and monitoring of active processes are used to constrain conceptual and numerical models and develop sedimentary system theory. But real-time observations of active Earth-surface processes are limited to the very recent, and how such processes integrate over longer timescales to transform into strata remains unknown. At longer timescales (>106 yr), the stratigraphic record is the only vestige of ancient sedimentary systems. Stratigraphic successions contain a complex record of sediment deposition and preservation, as well as the detrital material that originated in long since denuded orogenic belts. Moreover, as the timescale of the duration of the process-response behavior and/or system age increase, additional aspects must be considered (e.g., significant tectonic regime change, rare but significant events, non-periodic global change, etc.). In this presentation we discuss several examples of sedimentary system analysis at different timescales with the goal of highlighting various approaches at one timescale and how they can (or cannot) be applied for questions at different timescales. Examples include: (1) brief review of decadal to centennial sediment budgets; (2) land-to-sea sediment budget reconstructions from southern California at millennial to multi-millennial timescales, and (3) sedimentary system response to climatic and tectonic forcings at ≥105 yr timescales.

Vegetation of steep slopes in the shrub-steppe region of south-central Washington

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sauer, R H; Rickard, W H

1977-01-01

This paper presents data and conclusions concerning the vegetation and soils of steep natural slopes of arid regions. Cover by species and soil physical and chemical properties were taken from 10 canyons along the Columbia River north of Pasco, Washington. Vegetative cover was significantly different and averaged 25 percent on the south-facing and 72 percent on the north-facing slopes. The mean number of species were significantly different. Four species were restricted to the south slopes, 10 were restricted to the north slopes, and 23 were common to both. Poa sandbergii and Agropyron spicatum, native perennial grasses, dominated the north-facing slopesmore » and Bromus tectorum, an alien annual grass, dominated the south-facing slopes. Soils were shallower and rockier on the south-facing slopes. Even though vegetative cover and number of species were different, the similar number of dominant species suggest community functions are nonetheless similar in these contrasting environments.« less

Humans Can Adopt Optimal Discounting Strategy under Real-Time Constraints

PubMed Central

Schweighofer, N; Shishida, K; Han, C. E; Okamoto, Y; Tanaka, S. C; Yamawaki, S; Doya, K

2006-01-01

Critical to our many daily choices between larger delayed rewards, and smaller more immediate rewards, are the shape and the steepness of the function that discounts rewards with time. Although research in artificial intelligence favors exponential discounting in uncertain environments, studies with humans and animals have consistently shown hyperbolic discounting. We investigated how humans perform in a reward decision task with temporal constraints, in which each choice affects the time remaining for later trials, and in which the delays vary at each trial. We demonstrated that most of our subjects adopted exponential discounting in this experiment. Further, we confirmed analytically that exponential discounting, with a decay rate comparable to that used by our subjects, maximized the total reward gain in our task. Our results suggest that the particular shape and steepness of temporal discounting is determined by the task that the subject is facing, and question the notion of hyperbolic reward discounting as a universal principle. PMID:17096592

Temperature Induced Syllable Breaking Unveils Nonlinearly Interacting Timescales in Birdsong Motor Pathway

PubMed Central

Goldin, Matías A.; Alonso, Leandro M.; Alliende, Jorge A.; Goller, Franz; Mindlin, Gabriel B.

2013-01-01

The nature of telencephalic control over premotor and motor circuits is debated. Hypotheses range from complete usurping of downstream circuitry to highly interactive mechanisms of control. We show theoretically and experimentally, that telencephalic song motor control in canaries is consistent with a highly interactive strategy. As predicted from a theoretical model of respiratory control, mild cooling of a forebrain nucleus (HVC) led to song stretching, but further cooling caused progressive restructuring of song, consistent with the hypothesis that respiratory gestures are subharmonic responses to a timescale present in the output of HVC. This interaction between a life-sustaining motor function (respiration) and telencephalic song motor control suggests a more general mechanism of how nonlinear integration of evolutionarily new brain structures into existing circuitry gives rise to diverse, new behavior. PMID:23818988

Temperature induced syllable breaking unveils nonlinearly interacting timescales in birdsong motor pathway.

PubMed

Goldin, Matías A; Alonso, Leandro M; Alliende, Jorge A; Goller, Franz; Mindlin, Gabriel B

2013-01-01

The nature of telencephalic control over premotor and motor circuits is debated. Hypotheses range from complete usurping of downstream circuitry to highly interactive mechanisms of control. We show theoretically and experimentally, that telencephalic song motor control in canaries is consistent with a highly interactive strategy. As predicted from a theoretical model of respiratory control, mild cooling of a forebrain nucleus (HVC) led to song stretching, but further cooling caused progressive restructuring of song, consistent with the hypothesis that respiratory gestures are subharmonic responses to a timescale present in the output of HVC. This interaction between a life-sustaining motor function (respiration) and telencephalic song motor control suggests a more general mechanism of how nonlinear integration of evolutionarily new brain structures into existing circuitry gives rise to diverse, new behavior.

The different maturation of the corticospinal tract and corticoreticular pathway in normal brain development: diffusion tensor imaging study

PubMed Central

Yeo, Sang Seok; Jang, Sung Ho; Son, Su Min

2014-01-01

Background and Purpose: The corticospinal tract (CST) and corticoreticular pathway (CRP) are known to be important neural tracts for motor development. However, little is known about the difference in maturation of the CST and CRP. In this study, using diffusion tensor imaging (DTI), we investigated maturation of the CST and CRP in typically developed children and normal healthy adults. Methods: We recruited 75 normal healthy subjects for this study. DTI was performed using 1.5-T, and the CST and CRP were reconstructed using DTI-Studio software. Values of fractional anisotropy (FA) and fiber volume (FV) of the CST and CRP were measured. Results: In the current study, the threshold points for CST and CRP maturation were different in normal brain development. Change in FA value of the CST showed a steep increase until 7 years of age and then a gradual increase until adulthood, however, the CRP showed a steep increase only until 2 years of age and then a very gradual increase or plateau until adulthood. In terms of FV, the CST showed a steep increase until 12 years and then a gradual increase until adulthood, in contrast, the CRP showed gradual increase of FV across whole age range (0–25 years). Conclusion: The difference in maturation process between CST and CRP appears to be related to different periods of fine and gross motor development. This radiologic information can provide a scientific basis for understanding development in motor function. PMID:25309378

Inactivation of tannins in milled sorghum grain through steeping in dilute NaOH solution.

PubMed

Adetunji, Adeoluwa I; Duodu, Kwaku G; Taylor, John R N

2015-05-15

Steeping milled sorghum in up to 0.4% NaOH was investigated as a method of tannin inactivation. NaOH steeping substantially reduced assayable total phenols and tannins in both Type III and Type II sorghums and with Type III sorghum caused a 60-80% reduction in α-amylase inhibition compared to a 20% reduction by water steeping. NaOH treatment also reduced starch liquefaction time and increased free amino nitrogen. Type II tannin sorghum did not inhibit α-amylase and consequently the NaOH treatment had no effect. HPLC and LC-MS of the tannin extracts indicated a general trend of increasing proanthocyanidin/procyanidin size with increasing NaOH concentration and steeping time, coupled with a reduction in total area of peaks resolved. These show that the NaOH treatment forms highly polymerised tannin compounds, too large to assay and to interact with the α-amylase. NaOH pre-treatment of Type III sorghums could enable their utilisation in bioethanol production. Copyright © 2014 Elsevier Ltd. All rights reserved.

A method for the estimation of the significance of cross-correlations in unevenly sampled red-noise time series

NASA Astrophysics Data System (ADS)

Max-Moerbeck, W.; Richards, J. L.; Hovatta, T.; Pavlidou, V.; Pearson, T. J.; Readhead, A. C. S.

2014-11-01

We present a practical implementation of a Monte Carlo method to estimate the significance of cross-correlations in unevenly sampled time series of data, whose statistical properties are modelled with a simple power-law power spectral density. This implementation builds on published methods; we introduce a number of improvements in the normalization of the cross-correlation function estimate and a bootstrap method for estimating the significance of the cross-correlations. A closely related matter is the estimation of a model for the light curves, which is critical for the significance estimates. We present a graphical and quantitative demonstration that uses simulations to show how common it is to get high cross-correlations for unrelated light curves with steep power spectral densities. This demonstration highlights the dangers of interpreting them as signs of a physical connection. We show that by using interpolation and the Hanning sampling window function we are able to reduce the effects of red-noise leakage and to recover steep simple power-law power spectral densities. We also introduce the use of a Neyman construction for the estimation of the errors in the power-law index of the power spectral density. This method provides a consistent way to estimate the significance of cross-correlations in unevenly sampled time series of data.

Simple steep-axis marking technique using a corneal analyzer.

PubMed

Ng, Alex L K; Chan, Tommy C Y; Jhanji, Vishal; Cheng, George P M

2017-02-01

We describe a simple steep-axis marking technique that uses a corneal analyzer (OPD III scan) during arcuate keratotomy in femtosecond laser-assisted cataract surgery. The technique requires a single reference mark at the limbus, which does not have to be on the horizontal axis. Using the corneal analyzer, the angle between the steep axis and the reference line between the reference mark and the center of the cornea can be determined. The angle from the reference mark is used intraoperatively to locate the steep axis. This eliminates the potential error from different head positions during keratometry measurement and during traditional marking under the slitlamp. The marking technique can also be applied to toric intraocular lens implantation during cataract surgery. Copyright © 2017 ASCRS and ESCRS. Published by Elsevier Inc. All rights reserved.

Rapid Crystallization of the Bishop Magma

NASA Astrophysics Data System (ADS)

Gualda, G. A.; Anderson, A. T.; Sutton, S. R.

2007-12-01

Substantial effort has been made to understand the longevity of rhyolitic magmas, and particular attention has been paid to the systems in the Long Valley area (California). Recent geochronological data suggest discrete magma bodies that existed for hundreds of thousands of years. Zircon crystallization ages for the Bishop Tuff span 100-200 ka, and were interpreted to reflect slow crystallization of a liquid-rich magma. Here we use the diffusional relaxation of Ti zoning in quartz to investigate the longevity of the Bishop magma. We have used such an approach to show the short timescales of crystallization of Ti-rich rims on quartz from early- erupted Bishop Tuff. We have now recognized Ti-rich cores in quartz that can be used to derive the timescales of their crystallization. We studied four samples of the early-erupted Bishop. Hand-picked crystals were mounted on glass slides and polished. Cathodoluminescence (CL) images were obtained using the electron microprobe at the University of Chicago. Ti zoning was documented using the GeoSoilEnviroCARS x-ray microprobe at the Advanced Photon Source (Argonne National Lab). Quartz crystals in all 4 samples include up to 3 Ti-bearing zones: a central core (50-100 μm in diameter, ca. 50 ppm Ti), a volumetrically predominant interior (~40 ppm Ti), and in some crystals a 50-100 μm thick rim (50 ppm Ti). Maximum estimates of core residence times were calculated using a 1D diffusion model, as the time needed to smooth an infinitely steep profile to fit the observed profile. Surprisingly, even for the largest crystals studied - ca. 2 mm in diameter - core residence times are less than 1 ka. Calculated growth rates imply that even cm-sized crystals crystallized in less than 10 ka. Crystal size distribution data show that crystals larger than 3 mm are exceedingly rare, such that the important inference is that the bulk of the crystallization of the early-erupted Bishop magma occurred in only a few thousand years. This timescale is 2 orders of magnitude smaller than the shortest durations derived from geochronology. In the current paradigm, this implies that the Bishop magma existed virtually free of crystals for 100-200 ka. Occasional recharge of the system could cause resorption of crystals. The challenge, however, is to explain how a large- volume, liquid- and volatile-rich system, was prevented from erupting for over 100 ka. The trouble is such that it puts into question the whole concept of a long-lived, liquid-rich magma body. Evidence has accumulated to show that the Bishop magma was stratified and did not convect during crystallization, the stratification was established prior to phenocryst crystallization, and crystal migration did not significantly perturb the stratification. All these are simpler to explain if liquid-rich magma only existed for a short period of time, and we estimate the time as being on the order of 1 ka. The geospeedometric timescale inferred can be reconciled with the geochronological evidence if we interpret zircon crystallization ages as reflecting episodic growth in response to waxing and waning of a mushy body, rather than continuous crystallization from liquid-rich magma in a long-lived, large-volume magma body. We speculate that only after 100-200 ka did favorable conditions emerge and allowed for the generation of a large volume of liquid-rich magma. Once such a body of magma was established, it progressed rather quickly towards eruption.

Small-scale impacts as potential trigger for landslides on small Solar system bodies

NASA Astrophysics Data System (ADS)

Hofmann, Marc; Sierks, Holger; Blum, Jürgen

2017-07-01

We conducted a set of experiments to investigate whether millimetre-sized impactors impinging on a granular material at several m s-1 are able to trigger avalanches on small, atmosphereless planetary bodies. These experiments were carried out at the Zentrum für angewandte Raumfahrttechnologie und Mikrogravitation (ZARM) drop tower facility in Bremen, Germany to facilitate a reduced gravity environment. Additional data were gathered at Earth gravity levels in the laboratory. As sample materials we used a ground Howardites, Eucrites and Diogenites (HED) meteorite and the Johnson Space Center (JSC) Mars-1 Martian soil simulant. We found that this type of small-scale impact can trigger avalanches with a moderate probability, if the target material is tilted to an angle close to the angle of repose. We additionally simulated a small-scale impact using the discrete element method code esys-particle. These simulations show that energy transfer from impactor to the target material is most efficient at low- and moderate-impactor inclinations and the transferred energy is retained in particles close to the surface due to a rapid dissipation of energy in lower material layers driven by inelastic collisions. Through Monte Carlo simulations we estimate the time-scale on which small-scale impacts with the observed characteristics will trigger avalanches covering all steep slopes on the surface of a small planetary body to be of the order 105 yr.

A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation.

PubMed

Wang, Minglei; Jiang, Ying-Ying; Kim, Kyung Mo; Qu, Ge; Ji, Hong-Fang; Mittenthal, Jay E; Zhang, Hong-Yu; Caetano-Anollés, Gustavo

2011-01-01

The standard molecular clock describes a constant rate of molecular evolution and provides a powerful framework for evolutionary timescales. Here, we describe the existence and implications of a molecular clock of folds, a universal recurrence in the discovery of new structures in the world of proteins. Using a phylogenomic structural census in hundreds of proteomes, we build phylogenies and time lines of domains at fold and fold superfamily levels of structural complexity. These time lines correlate approximately linearly with geological timescales and were here used to date two crucial events in life history, planet oxygenation and organism diversification. We first dissected the structures and functions of enzymes in simulated metabolic networks. The placement of anaerobic and aerobic enzymes in the time line revealed that aerobic metabolism emerged about 2.9 billion years (giga-annum; Ga) ago and expanded during a period of about 400 My, reaching what is known as the Great Oxidation Event. During this period, enzymes recruited old and new folds for oxygen-mediated enzymatic activities. Remarkably, the first fold lost by a superkingdom disappeared in Archaea 2.6 Ga ago, within the span of oxygen rise, suggesting that oxygen also triggered diversification of life. The implications of a molecular clock of folds are many and important for the neutral theory of molecular evolution and for understanding the growth and diversity of the protein world. The clock also extends the standard concept that was specific to molecules and their timescales and turns it into a universal timescale-generating tool.

Scale dependant compensational stacking of channelized sedimentary deposits

NASA Astrophysics Data System (ADS)

Wang, Y.; Straub, K. M.; Hajek, E. A.

2010-12-01

Compensational stacking, the tendency for sediment transport system to preferentially fill topographic lows, thus smoothing out topographic relief is a concept used in the interpretation of the stratigraphic record. Recently, a metric was developed to quantify the strength of compensation in sedimentary basins by comparing observed stacking patterns to what would be expected from simple, uncorrelated stacking. This method uses the rate of decay of spatial variability in sedimentation between picked depositional horizons with increasing vertical stratigraphic averaging distance. We explore how this metric varies as a function of stratigraphic scale using data from physical experiments, stratigraphy exposed in outcrops and numerical models. In an experiment conducted at Tulane University’s Sediment Dynamics Laboratory, the topography of a channelized delta formed by weakly cohesive sediment was monitored along flow-perpendicular transects at a high temporal resolution relative to channel kinematics. Over the course of this experiment a uniform relative subsidence pattern, designed to isolate autogenic processes, resulted in the construction of a stratigraphic package that is 25 times as thick as the depth of the experimental channels. We observe a scale-dependence on the compensational stacking of deposits set by the system’s avulsion time-scale. Above the avulsion time-scale deposits stack purely compensationally, but below this time-scale deposits stack somewhere between randomly and deterministically. The well-exposed Ferris Formation (Cretaceous/Paleogene, Hanna Basin, Wyoming, USA) also shows scale-dependant stratigraphic organization which appears to be set by an avulsion time-scale. Finally, we utilize simple object-based models to illustrate how channel avulsions influence compensation in alluvial basins.

Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR

PubMed Central

Fenwick, R. Bryn; van den Bedem, Henry; Fraser, James S.; Wright, Peter E.

2014-01-01

Detailed descriptions of atomic coordinates and motions are required for an understanding of protein dynamics and their relation to molecular recognition, catalytic function, and allostery. Historically, NMR relaxation measurements have played a dominant role in the determination of the amplitudes and timescales (picosecond–nanosecond) of bond vector fluctuations, whereas high-resolution X-ray diffraction experiments can reveal the presence of and provide atomic coordinates for multiple, weakly populated substates in the protein conformational ensemble. Here we report a hybrid NMR and X-ray crystallography analysis that provides a more complete dynamic picture and a more quantitative description of the timescale and amplitude of fluctuations in atomic coordinates than is obtainable from the individual methods alone. Order parameters (S2) were calculated from single-conformer and multiconformer models fitted to room temperature and cryogenic X-ray diffraction data for dihydrofolate reductase. Backbone and side-chain order parameters derived from NMR relaxation experiments are in excellent agreement with those calculated from the room-temperature single-conformer and multiconformer models, showing that the picosecond timescale motions observed in solution occur also in the crystalline state. These motions are quenched in the crystal at cryogenic temperatures. The combination of NMR and X-ray crystallography in iterative refinement promises to provide an atomic resolution description of the alternate conformational substates that are sampled through picosecond to nanosecond timescale fluctuations of the protein structure. The method also provides insights into the structural heterogeneity of nonmethyl side chains, aromatic residues, and ligands, which are less commonly analyzed by NMR relaxation measurements. PMID:24474795

X-Ray Intraday Variability of Five TeV Blazars with NuSTAR

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pandey, Ashwani; Gupta, Alok C.; Wiita, Paul J., E-mail: ashwanitapan@gmail.com, E-mail: acgupta30@gmail.com, E-mail: wiitap@tcnj.edu

We have examined 40 Nuclear Spectroscopic Telescope Array ( NuSTAR ) light curves (LCs) of five TeV emitting high synchrotron peaked blazars: 1ES 0229+200, Mrk 421, Mrk 501, 1ES 1959+650, and PKS 2155−304. Four of the blazars showed intraday variability in the NuSTAR energy range of 3–79 keV. Using an autocorrelation function analysis we searched for intraday variability timescales in these LCs and found indications of several between 2.5 and 32.8 ks in eight LCs of Mrk 421, a timescale around 8.0 ks for one LC of Mrk 501, and timescales of 29.6 and 57.4 ks in two LCs ofmore » PKS 2155-304. The other two blazars’ LCs do not show any evidence for intraday variability timescales shorter than the lengths of those observations; however, the data were both sparser and noisier for them. We found positive correlations with zero lag between soft (3–10 keV) and hard (10–79 keV) bands for most of the LCs, indicating that their emissions originate from the same electron population. We examined spectral variability using a hardness ratio analysis and noticed a general “harder-when-brighter” behavior. The 22 LCs of Mrk 421 observed between 2012 July and 2013 April show that this source was in a quiescent state for an extended period of time and then underwent an unprecedented double-peaked outburst while monitored on a daily basis during 2013 April 10–16. We briefly discuss models capable of explaining these blazar emissions.« less

BL-Lacs in X-Ray Outburst

NASA Technical Reports Server (NTRS)

Remillard, Ronald A.; Urry, C. Megan; Aharonian, Felix; Pian, Elena; Sambruna, Rita; Coppi, Paolo

2000-01-01

We conducted a multifrequency campaign for the TeV blazar Markarian 421 in 1998 April. The campaign started from a pronounced high-amplitude flare recorded by BeppoSAX and Whipple; the Advanced Satellite for Cosmology and Astrophysics (ASCA) observation started three days later. In the X-ray data, we detected multiple flares, occurring on timescales of about one day. ASCA data clearly reveal spectral variability. The comparison of the data from ASCA, the Extreme Ultraviolet Explorer, and the Rossi X-Ray Timing Explorer indicates that the variability amplitudes in the low-energy synchrotron component are larger at higher photon energies. In TeV and gamma-rays, large intraday variations-which were correlated with the X-ray flux-were observed when results from three Cerenkov telescopes were combined. The rms variability of TeV and gamma-rays was similar to that observed in hard X-rays, above ten keV. The X-ray light curve reveals flares that are almost symmetric for most cases, implying that the dominant timescale is the light crossing time through the emitting region. The structure function analysis based on the continuous X-ray light curve of seven days indicates that the characteristic timescale is approx. 0.5 days. The analysis of ASCA light curves in various energy bands appears to show both soft (positive) and hard (negative) lags. These may not be real, as systematic effects could also produce these lags, which are all much smaller than an orbit. If the lags of both signs are real, these imply that the particle acceleration and X-ray cooling timescales are similar.

Signal-independent timescale analysis (SITA) and its application for neural coding during reaching and walking.

PubMed

Zacksenhouse, Miriam; Lebedev, Mikhail A; Nicolelis, Miguel A L

2014-01-01

What are the relevant timescales of neural encoding in the brain? This question is commonly investigated with respect to well-defined stimuli or actions. However, neurons often encode multiple signals, including hidden or internal, which are not experimentally controlled, and thus excluded from such analysis. Here we consider all rate modulations as the signal, and define the rate-modulations signal-to-noise ratio (RM-SNR) as the ratio between the variance of the rate and the variance of the neuronal noise. As the bin-width increases, RM-SNR increases while the update rate decreases. This tradeoff is captured by the ratio of RM-SNR to bin-width, and its variations with the bin-width reveal the timescales of neural activity. Theoretical analysis and simulations elucidate how the interactions between the recovery properties of the unit and the spectral content of the encoded signals shape this ratio and determine the timescales of neural coding. The resulting signal-independent timescale analysis (SITA) is applied to investigate timescales of neural activity recorded from the motor cortex of monkeys during: (i) reaching experiments with Brain-Machine Interface (BMI), and (ii) locomotion experiments at different speeds. Interestingly, the timescales during BMI experiments did not change significantly with the control mode or training. During locomotion, the analysis identified units whose timescale varied consistently with the experimentally controlled speed of walking, though the specific timescale reflected also the recovery properties of the unit. Thus, the proposed method, SITA, characterizes the timescales of neural encoding and how they are affected by the motor task, while accounting for all rate modulations.

A model function of the global bomb tritium distribution in precipitation, 1960-1986

NASA Astrophysics Data System (ADS)

Doney, Scott C.; Glover, David M.; Jenkins, William J.

1992-04-01

The paper presents a model function for predicting the annual mean concentration of the decay-corrected bomb tritium in precipitation over the time period 1960-1986. The model was developed using the World Meteorological Organization/International Atomic Energy Agency data for tritium precipitation. The resulting tritium function is global in scope and includes both marine and continental data. Estimates were obtained of the seasonal cycle of tritium in precipitation, which may be useful for studying atmospheric transport and oceanic processes, such as convection and subduction that occur on seasonal timescales.

On equatorially symmetric and antisymmetric geomagnetic secular variation timescales

NASA Astrophysics Data System (ADS)

Amit, Hagay; Coutelier, Maélie; Christensen, Ulrich R.

2018-03-01

It has been suggested that the secular variation (SV) timescales of the geomagnetic field vary as 1 / ℓ (where ℓ is the spherical harmonic degree), except for the dipole. Here we propose that the same scaling law applies for SV timescales defined for different symmetry classes of the geomagnetic field and SV. We decompose the field and its SV into symmetric and antisymmetric parts and show in geomagnetic field models and numerical dynamo simulations that the corresponding SV timescales also vary as 1 / ℓ , again except for the dipole. The time-average antisymmetric/symmetric SV timescales are larger/smaller than the total, respectively. The difference in SV timescales between these two symmetry classes is probably due to different degrees of alignment of the core flow with different magnetic field structures at the core-mantle boundary. The symmetric dipole SV timescale in the recent geomagnetic field and in long-term time-averages from numerical dynamos is below the extrapolated 1 / ℓ curve, whereas before ∼ 1965 the geomagnetic dipole tilt was rather steady and the symmetric dipole SV timescale exceeded the extrapolated 1 / ℓ curve. We hypothesize that the period of nearly steady geomagnetic dipole tilt between 1810-1965 was anomalous for the geodynamo. Overall, the deviation of the dipole SV timescales from the 1 / ℓ curves may indicate that magnetic diffusion contributes to the dipole SV more than it does for higher degrees.

Probing AGN Accretion Physics through AGN Variability: Insights from Kepler

NASA Astrophysics Data System (ADS)

Kasliwal, Vishal Pramod

Active Galactic Nuclei (AGN) exhibit large luminosity variations over the entire electromagnetic spectrum on timescales ranging from hours to years. The variations in luminosity are devoid of any periodic character and appear stochastic. While complex correlations exist between the variability observed in different parts of the electromagnetic spectrum, no frequency band appears to be completely dominant, suggesting that the physical processes producing the variability are exceedingly rich and complex. In the absence of a clear theoretical explanation of the variability, phenomenological models are used to study AGN variability. The stochastic behavior of AGN variability makes formulating such models difficult and connecting them to the underlying physics exceedingly hard. We study AGN light curves serendipitously observed by the NASA Kepler planet-finding mission. Compared to previous ground-based observations, Kepler offers higher precision and a smaller sampling interval resulting in potentially higher quality light curves. Using structure functions, we demonstrate that (1) the simplest statistical model of AGN variability, the damped random walk (DRW), is insufficient to characterize the observed behavior of AGN light curves; and (2) variability begins to occur in AGN on time-scales as short as hours. Of the 20 light curves studied by us, only 3-8 may be consistent with the DRW. The structure functions of the AGN in our sample exhibit complex behavior with pronounced dips on time-scales of 10-100 d suggesting that AGN variability can be very complex and merits further analysis. We examine the accuracy of the Kepler pipeline-generated light curves and find that the publicly available light curves may require re-processing to reduce contamination from field sources. We show that while the re-processing changes the exact PSD power law slopes inferred by us, it is unlikely to change the conclusion of our structure function study-Kepler AGN light curves indicate that the DRW is insufficient to characterize AGN variability. We provide a new approach to probing accretion physics with variability by decomposing observed light curves into a set of impulses that drive diffusive processes using C-ARMA models. Applying our approach to Kepler data, we demonstrate how the time-scales reported in the literature can be interpreted in the context of the growth and decay time-scales for flux perturbations and tentatively identify the flux perturbation driving process with accretion disk turbulence on length-scales much longer than the characteristic eddy size. Our analysis technique is applicable to (1) studying the connection between AGN sub-type and variability properties; (2) probing the origins of variability by studying the multi-wavelength behavior of AGN; (3) testing numerical simulations of accretion flows with the goal of creating a library of the variability properties of different accretion mechanisms; (4) hunting for changes in the behavior of the accretion flow by block-analyzing observed light curves; and (5) constraining the sampling requirements of future surveys of AGN variability.

Adaptive Equilibrium Regulation: A Balancing Act in Two Timescales

PubMed Central

Boker, Steven M.

2015-01-01

An equilibrium involves a balancing of forces. Just as one maintains upright posture in standing or walking, many self-regulatory and interpersonal behaviors can be framed as a balancing act between an ever changing environment and within-person processes. The emerging balance between person and environment, the equilibria, are dynamic and adaptive in response to development and learning. A distinction is made between equilibrium achieved solely due to a short timescale balancing of forces and a longer timescale preferred equilibrium which we define as a state towards which the system slowly adapts. Together, these are developed into a framework that this article calls Adaptive Equilibrium Regulation (ÆR), which separates a regulatory process into two timescales: a faster regulation that automatically balances forces and a slower timescale adaptation process that reconfigures the fast regulation so as to move the system towards its preferred equilibrium when an environmental force persists over the longer timescale. This way of thinking leads to novel models for the interplay between multiple timescales of behavior, learning, and development. PMID:27066197

Six-Degree-of-Freedom Trajectory Optimization Utilizing a Two-Timescale Collocation Architecture

NASA Technical Reports Server (NTRS)

Desai, Prasun N.; Conway, Bruce A.

2005-01-01

Six-degree-of-freedom (6DOF) trajectory optimization of a reentry vehicle is solved using a two-timescale collocation methodology. This class of 6DOF trajectory problems are characterized by two distinct timescales in their governing equations, where a subset of the states have high-frequency dynamics (the rotational equations of motion) while the remaining states (the translational equations of motion) vary comparatively slowly. With conventional collocation methods, the 6DOF problem size becomes extraordinarily large and difficult to solve. Utilizing the two-timescale collocation architecture, the problem size is reduced significantly. The converged solution shows a realistic landing profile and captures the appropriate high-frequency rotational dynamics. A large reduction in the overall problem size (by 55%) is attained with the two-timescale architecture as compared to the conventional single-timescale collocation method. Consequently, optimum 6DOF trajectory problems can now be solved efficiently using collocation, which was not previously possible for a system with two distinct timescales in the governing states.

Drawing from Memory: Hand-Eye Coordination at Multiple Scales

PubMed Central

Spivey, Michael J.

2013-01-01

Eyes move to gather visual information for the purpose of guiding behavior. This guidance takes the form of perceptual-motor interactions on short timescales for behaviors like locomotion and hand-eye coordination. More complex behaviors require perceptual-motor interactions on longer timescales mediated by memory, such as navigation, or designing and building artifacts. In the present study, the task of sketching images of natural scenes from memory was used to examine and compare perceptual-motor interactions on shorter and longer timescales. Eye and pen trajectories were found to be coordinated in time on shorter timescales during drawing, and also on longer timescales spanning study and drawing periods. The latter type of coordination was found by developing a purely spatial analysis that yielded measures of similarity between images, eye trajectories, and pen trajectories. These results challenge the notion that coordination only unfolds on short timescales. Rather, the task of drawing from memory evokes perceptual-motor encodings of visual images that preserve coarse-grained spatial information over relatively long timescales as well. PMID:23554894

Conditional dissipation of scalars in homogeneous turbulence: Closure for MMC modelling

NASA Astrophysics Data System (ADS)

Wandel, Andrew P.

2013-08-01

While the mean and unconditional variance are to be predicted well by any reasonable turbulent combustion model, these are generally not sufficient for the accurate modelling of complex phenomena such as extinction/reignition. An additional criterion has been recently introduced: accurate modelling of the dissipation timescales associated with fluctuations of scalars about their conditional mean (conditional dissipation timescales). Analysis of Direct Numerical Simulation (DNS) results for a passive scalar shows that the conditional dissipation timescale is of the order of the integral timescale and smaller than the unconditional dissipation timescale. A model is proposed: the conditional dissipation timescale is proportional to the integral timescale. This model is used in Multiple Mapping Conditioning (MMC) modelling for a passive scalar case and a reactive scalar case, comparing to DNS results for both. The results show that this model improves the accuracy of MMC predictions so as to match the DNS results more closely using a relatively-coarse spatial resolution compared to other turbulent combustion models.

Functional Dynamics of Hexameric Helicase Probed by Hydrogen Exchange and Simulation

PubMed Central

Radou, Gaël; Dreyer, Frauke N.; Tuma, Roman; Paci, Emanuele

2014-01-01

The biological function of large macromolecular assemblies depends on their structure and their dynamics over a broad range of timescales; for this reason, it is a significant challenge to investigate these assemblies using conventional experimental techniques. One of the most promising experimental techniques is hydrogen-deuterium exchange detected by mass spectrometry. Here, we describe to our knowledge a new computational method for quantitative interpretation of deuterium exchange kinetics and apply it to a hexameric viral helicase P4 that unwinds and translocates RNA into a virus capsid at the expense of ATP hydrolysis. Room-temperature dynamics probed by a hundred nanoseconds of all-atom molecular dynamics simulations is sufficient to predict the exchange kinetics of most sequence fragments and provide a residue-level interpretation of the low-resolution experimental results. The strategy presented here is also a valuable tool to validate experimental data, e.g., assignments, and to probe mechanisms that cannot be observed by x-ray crystallography, or that occur over timescales longer than those that can be realistically simulated, such as the opening of the hexameric ring. PMID:25140434

Beyond negative valence: 2-week administration of a serotonergic antidepressant enhances both reward and effort learning signals.

PubMed

Scholl, Jacqueline; Kolling, Nils; Nelissen, Natalie; Browning, Michael; Rushworth, Matthew F S; Harmer, Catherine J

2017-02-01

To make good decisions, humans need to learn about and integrate different sources of appetitive and aversive information. While serotonin has been linked to value-based decision-making, its role in learning is less clear, with acute manipulations often producing inconsistent results. Here, we show that when the effects of a selective serotonin reuptake inhibitor (SSRI, citalopram) are studied over longer timescales, learning is robustly improved. We measured brain activity with functional magnetic resonance imaging (fMRI) in volunteers as they performed a concurrent appetitive (money) and aversive (effort) learning task. We found that 2 weeks of citalopram enhanced reward and effort learning signals in a widespread network of brain regions, including ventromedial prefrontal and anterior cingulate cortex. At a behavioral level, this was accompanied by more robust reward learning. This suggests that serotonin can modulate the ability to learn via a mechanism that is independent of stimulus valence. Such effects may partly underlie SSRIs' impact in treating psychological illnesses. Our results highlight both a specific function in learning for serotonin and the importance of studying its role across longer timescales.

Dynamic neutron scattering from conformational dynamics. I. Theory and Markov models

NASA Astrophysics Data System (ADS)

Lindner, Benjamin; Yi, Zheng; Prinz, Jan-Hendrik; Smith, Jeremy C.; Noé, Frank

2013-11-01

The dynamics of complex molecules can be directly probed by inelastic neutron scattering experiments. However, many of the underlying dynamical processes may exist on similar timescales, which makes it difficult to assign processes seen experimentally to specific structural rearrangements. Here, we show how Markov models can be used to connect structural changes observed in molecular dynamics simulation directly to the relaxation processes probed by scattering experiments. For this, a conformational dynamics theory of dynamical neutron and X-ray scattering is developed, following our previous approach for computing dynamical fingerprints of time-correlation functions [F. Noé, S. Doose, I. Daidone, M. Löllmann, J. Chodera, M. Sauer, and J. Smith, Proc. Natl. Acad. Sci. U.S.A. 108, 4822 (2011)]. Markov modeling is used to approximate the relaxation processes and timescales of the molecule via the eigenvectors and eigenvalues of a transition matrix between conformational substates. This procedure allows the establishment of a complete set of exponential decay functions and a full decomposition into the individual contributions, i.e., the contribution of every atom and dynamical process to each experimental relaxation process.

Large-scale geomorphology: Classical concepts reconciled and integrated with contemporary ideas via a surface processes model

NASA Astrophysics Data System (ADS)

Kooi, Henk; Beaumont, Christopher

1996-02-01

Linear systems analysis is used to investigate the response of a surface processes model (SPM) to tectonic forcing. The SPM calculates subcontinental scale denudational landscape evolution on geological timescales (1 to hundreds of million years) as the result of simultaneous hillslope transport, modeled by diffusion, and fluvial transport, modeled by advection and reaction. The tectonically forced SPM accommodates the large-scale behavior envisaged in classical and contemporary conceptual geomorphic models and provides a framework for their integration and unification. The following three model scales are considered: micro-, meso-, and macroscale. The concepts of dynamic equilibrium and grade are quantified at the microscale for segments of uniform gradient subject to tectonic uplift. At the larger meso- and macroscales (which represent individual interfluves and landscapes including a number of drainage basins, respectively) the system response to tectonic forcing is linear for uplift geometries that are symmetric with respect to baselevel and which impose a fully integrated drainage to baselevel. For these linear models the response time and the transfer function as a function of scale characterize the model behavior. Numerical experiments show that the styles of landscape evolution depend critically on the timescales of the tectonic processes in relation to the response time of the landscape. When tectonic timescales are much longer than the landscape response time, the resulting dynamic equilibrium landscapes correspond to those envisaged by Hack (1960). When tectonic timescales are of the same order as the landscape response time and when tectonic variations take the form of pulses (much shorter than the response time), evolving landscapes conform to the Penck type (1972) and to the Davis (1889, 1899) and King (1953, 1962) type frameworks, respectively. The behavior of the SPM highlights the importance of phase shifts or delays of the landform response and sediment yield in relation to the tectonic forcing. Finally, nonlinear behavior resulting from more general uplift geometries is discussed. A number of model experiments illustrate the importance of "fundamental form," which is an expression of the conformity of antecedent topography with the current tectonic regime. Lack of conformity leads to models that exhibit internal thresholds and a complex response.

The Structural Basis of IKs Ion-Channel Activation: Mechanistic Insights from Molecular Simulations.

PubMed

Ramasubramanian, Smiruthi; Rudy, Yoram

2018-06-05

Relating ion channel (iCh) structural dynamics to physiological function remains a challenge. Current experimental and computational techniques have limited ability to explore this relationship in atomistic detail over physiological timescales. A framework associating iCh structure to function is necessary for elucidating normal and disease mechanisms. We formulated a modeling schema that overcomes the limitations of current methods through applications of artificial intelligence machine learning. Using this approach, we studied molecular processes that underlie human IKs voltage-mediated gating. IKs malfunction underlies many debilitating and life-threatening diseases. Molecular components of IKs that underlie its electrophysiological function include KCNQ1 (a pore-forming tetramer) and KCNE1 (an auxiliary subunit). Simulations, using the IKs structure-function model, reproduced experimentally recorded saturation of gating-charge displacement at positive membrane voltages, two-step voltage sensor (VS) movement shown by fluorescence, iCh gating statistics, and current-voltage relationship. Mechanistic insights include the following: 1) pore energy profile determines iCh subconductance; 2) the entire protein structure, not limited to the pore, contributes to pore energy and channel subconductance; 3) interactions with KCNE1 result in two distinct VS movements, causing gating-charge saturation at positive membrane voltages and current activation delay; and 4) flexible coupling between VS and pore permits pore opening at lower VS positions, resulting in sequential gating. The new modeling approach is applicable to atomistic scale studies of other proteins on timescales of physiological function. Copyright © 2018 Biophysical Society. Published by Elsevier Inc. All rights reserved.

10 CFR 960.5-2-7 - Transportation.

Code of Federal Regulations, 2011 CFR

2011-01-01

... of sharp curves or steep grades and are not likely to be affected by landslides or rock slides. (v... highways and railroads such that steep grades, sharp switchbacks, rivers, lakes, landslides, rock slides...

Does the HI Mass Function Vary with Environment?

NASA Astrophysics Data System (ADS)

Minchin, Robert F.

2017-01-01

Based on analysis of a large dataset from the ALFALFA survey, Jones et al. (2016) recently claimed that the slope of the HI mass function is constant across different galactic environments, defined by their density. They point out that this finding is “perplexing” given that many previous studies have found that the HI mass functions of groups of galaxies have flat slopes, while the general field has a relatively steep slope. I argue that the analysis of Jones et al., and similar analyses in the past, is flawed as they examine the HI mass function of the galaxies found in environments with a given density, summed across the survey, not the HI mass function actually present in the individual structures at that density. If the position of the knee in the HI mass function were to vary between these structures, then the slope of the HI mass function found by summing across all of the structures with a given density would be steeper than the slope actually found in the individual structures. For example, if a survey were to contain three groups of galaxies, all with flat HI mass functions, but with the ‘knee’, at the mass of the largest galaxy in the group, at 108, 109 and 1010 solar masses, then the summed HI mass function would appear to have a knee at 1010 solar masses and a steep slope below this, rather than the flat slope that is actually present in the individual environments. It is not possible, therefore, to say from the analysis of Jones et al. that there is no dependence of the HI mass function on environment. This scenario explains the “seemingly contradictory findings” of Jones et al. and the earlier studies of individual groups as being due to differences in what is being studies, without having to invoke methodological errors in the derivation of the HI mass function.The Arecibo Observatory is operated by SRI International under a cooperative agreement with the National Science Foundation (AST-1100968), and in alliance with Ana G. Méndez-Universidad Metropolitana, and the Universities Space Research Association.

A steep peripheral ring in irregular cornea topography, real or an instrument error?

PubMed

Galindo-Ferreiro, Alicia; Galvez-Ruiz, Alberto; Schellini, Silvana A; Galindo-Alonso, Julio

2016-01-01

To demonstrate that the steep peripheral ring (red zone) on corneal topography after myopic laser in situ keratomileusis (LASIK) could possibly due to instrument error and not always to a real increase in corneal curvature. A spherical model for the corneal surface and modifying topography software was used to analyze the cause of an error due to instrument design. This study involved modification of the software of a commercially available topographer. A small modification of the topography image results in a red zone on the corneal topography color map. Corneal modeling indicates that the red zone could be an artifact due to an instrument-induced error. The steep curvature changes after LASIK, signified by the red zone, could be also an error due to the plotting algorithms of the corneal topographer, besides a steep curvature change.

Does perceived steepness deter stair climbing when an alternative is available?

PubMed

Eves, Frank F; Thorpe, Susannah K S; Lewis, Amanda; Taylor-Covill, Guy A H

2014-06-01

Perception of hill slant is exaggerated in explicit awareness. Proffitt (Perspectives on Psychological Science 1:110-122, 2006) argued that explicit perception of the slant of a climb allows individuals to plan locomotion in keeping with their available locomotor resources, yet no behavioral evidence supports this contention. Pedestrians in a built environment can often avoid climbing stairs, the man-made equivalent of steep hills, by choosing an adjacent escalator. Stair climbing is avoided more by women, the old, and the overweight than by their comparators. Two studies tested perceived steepness of the stairs as a cue that promotes this avoidance. In the first study, participants estimated the steepness of a staircase in a train station (n = 269). Sex, age, height, and weight were recorded. Women, older individuals, and those who were heavier and shorter reported the staircase as steeper than did their comparison groups. In a follow-up study in a shopping mall, pedestrians were recruited from those who chose the stairs and those who avoided them, with the samples stratified for sex, age, and weight status. Participants (n = 229) estimated the steepness of a life-sized image of the stairs they had just encountered, presented on the wall of a vacant shop in the mall. Pedestrians who avoided stair climbing by choosing the escalator reported the stairs as steeper even when demographic differences were controlled. Perceived steepness may to be a contextual cue that pedestrians use to avoid stair climbing when an alternative is available.

Improve projections of changes in southern African summer rainfall through comprehensive multi-timescale empirical statistical downscaling

NASA Astrophysics Data System (ADS)

Dieppois, B.; Pohl, B.; Eden, J.; Crétat, J.; Rouault, M.; Keenlyside, N.; New, M. G.

2017-12-01

The water management community has hitherto neglected or underestimated many of the uncertainties in climate impact scenarios, in particular, uncertainties associated with decadal climate variability. Uncertainty in the state-of-the-art global climate models (GCMs) is time-scale-dependant, e.g. stronger at decadal than at interannual timescales, in response to the different parameterizations and to internal climate variability. In addition, non-stationarity in statistical downscaling is widely recognized as a key problem, in which time-scale dependency of predictors plays an important role. As with global climate modelling, therefore, the selection of downscaling methods must proceed with caution to avoid unintended consequences of over-correcting the noise in GCMs (e.g. interpreting internal climate variability as a model bias). GCM outputs from the Coupled Model Intercomparison Project 5 (CMIP5) have therefore first been selected based on their ability to reproduce southern African summer rainfall variability and their teleconnections with Pacific sea-surface temperature across the dominant timescales. In observations, southern African summer rainfall has recently been shown to exhibit significant periodicities at the interannual timescale (2-8 years), quasi-decadal (8-13 years) and inter-decadal (15-28 years) timescales, which can be interpret as the signature of ENSO, the IPO, and the PDO over the region. Most of CMIP5 GCMs underestimate southern African summer rainfall variability and their teleconnections with Pacific SSTs at these three timescales. In addition, according to a more in-depth analysis of historical and pi-control runs, this bias is might result from internal climate variability in some of the CMIP5 GCMs, suggesting potential for bias-corrected prediction based empirical statistical downscaling. A multi-timescale regression based downscaling procedure, which determines the predictors across the different timescales, has thus been used to simulate southern African summer rainfall. This multi-timescale procedure shows much better skills in simulating decadal timescales of variability compared to commonly used statistical downscaling approaches.

The Analytical Limits of Modeling Short Diffusion Timescales

NASA Astrophysics Data System (ADS)

Bradshaw, R. W.; Kent, A. J.

2016-12-01

Chemical and isotopic zoning in minerals is widely used to constrain the timescales of magmatic processes such as magma mixing and crystal residence, etc. via diffusion modeling. Forward modeling of diffusion relies on fitting diffusion profiles to measured compositional gradients. However, an individual measurement is essentially an average composition for a segment of the gradient defined by the spatial resolution of the analysis. Thus there is the potential for the analytical spatial resolution to limit the timescales that can be determined for an element of given diffusivity, particularly where the scale of the gradient approaches that of the measurement. Here we use a probabilistic modeling approach to investigate the effect of analytical spatial resolution on estimated timescales from diffusion modeling. Our method investigates how accurately the age of a synthetic diffusion profile can be obtained by modeling an "unknown" profile derived from discrete sampling of the synthetic compositional gradient at a given spatial resolution. We also include the effects of analytical uncertainty and the position of measurements relative to the diffusion gradient. We apply this method to the spatial resolutions of common microanalytical techniques (LA-ICP-MS, SIMS, EMP, NanoSIMS). Our results confirm that for a given diffusivity, higher spatial resolution gives access to shorter timescales, and that each analytical spacing has a minimum timescale, below which it overestimates the timescale. For example, for Ba diffusion in plagioclase at 750 °C timescales are accurate (within 20%) above 10, 100, 2,600, and 71,000 years at 0.3, 1, 5, and 25 mm spatial resolution, respectively. For Sr diffusion in plagioclase at 750 °C, timescales are accurate above 0.02, 0.2, 4, and 120 years at the same spatial resolutions. Our results highlight the importance of selecting appropriate analytical techniques to estimate accurate diffusion-based timescales.

Comparing global-scale topographic and climatic metrics to long-term erosion rates using ArcSwath, an efficient new ArcGIS tool for swath profile analysis

NASA Astrophysics Data System (ADS)

Blomqvist, Niclas; Whipp, David

2016-04-01

The topography of the Earth's surface is the result of the interaction of tectonics, erosion and climate. Thus, topography should contain a record of these processes that can be extracted by topographic analysis. The question considered in this study is whether the spatial variations in erosion that have sculpted the modern topography are representative of the long-term erosion rates in mountainous regions. We compare long-term erosion rates derived from low-temperature thermochronometry to erosional proxies calculated from topographic and climatic data analysis. The study has been performed on a global scale including six orogens: The Himalaya, Andes, Taiwan, Olympic Mountains, Southern Alps in New Zealand and European Alps. The data was analyzed using a new swath profile analysis tool for ArcGIS called ArcSwath (https://github.com/HUGG/ArcSwath) to determine the correlations between the long-term erosion rates and modern elevations, slope angles, relief in 2.5-km- and 5-km-diameter circles, erosion potential, normalized channel steepness index ksn, and annual rainfall. ArcSwath uses a Python script that has been incorporated into an ArcMap 10.2 add-in tool, extracting swath profiles in about ten seconds compared to earlier workflows that could take more than an hour. In ArcMap, UTM-projected point or raster files can be used for creating swath profiles. Point data are projected onto the swath and the statistical parameters (minimum, mean and maximum of the values across the swath) are calculated for the raster data. Both can be immediately plotted using the Python matplotlib library, or plotted externally using the csv-file that is produced by ArcSwath. When raster and point data are plotted together, it is easier to make comparisons and see correlations between the selected data. An unambiguous correlation between the topographic or climatic metrics and long-term erosion rates was not found. Fitting of linear regression lines to the topographic/ climatic metric data and the long-term erosion rates shows that 86 of 288 plots (30%) have "good" R2 values (> 0.35) and 135 of 288 (47%) have an "acceptable" R2 value (> 0.2). The "good" and "acceptable" values have been selected on the basis of visual fit to the regression line. The majority of the plots with a "good" correlation value have positive correlations, while 11/86 plots have negative slopes for the regression lines. Interestingly, two topographic profile shapes were clear in swath profiles: Concave-up (e.g., the central-western Himalaya and the northern Bolivian Andes) and concave-down or straight (e.g., the eastern Himalayas and the southern Bolivian Andes). On the orogen scale, the concave-up shape is often related to relatively high precipitation and erosion rates on the slopes of steep topography. The concave-down/straight profiles seem to occur in association of low rainfall and/or erosion rates. Though we cannot say with confidence, the lack of a clear correlation between long-term erosion rates and climate or topography may be due to the difference in their respective timescales as climate can vary over shorter timescales than 105-107 years. In that case, variations between fluvial and glacial erosion may have overprinted the erosional effects of one another.

Steep Turn On/Off Green Tunnel Transistors

DTIC Science & Technology

2010-12-17

S. Cristoloveanu, D. Mariolle, D. Fraboulet, S. Deleonibus, “Lateral interband tunneling transistor in silicon-on-insulator," Applied Physics...concept of time dependant perturbation theory and Fermi’s Golden Rule (shown in Eq. (2.1) to calculate the transition rate of carriers tunneling into...E     (2.2) This equation shows that the functional form for the band-to-band tunneling rate has an exponential dependence on electric field

Radio astronomy aspects of the NASA SETI Sky Survey

NASA Technical Reports Server (NTRS)

Klein, Michael J.

1986-01-01

The application of SETI data to radio astronomy is studied. The number of continuum radio sources in the 1-10 GHz region to be counted and cataloged is predicted. The radio luminosity functions for steep and flat spectrum sources at 2, 8, and 22 GHz are derived using the model of Peacock and Gull (1981). The relation between source number and flux density is analyzed and the sensitivity of the system is evaluated.

Use of corn steep liquor as an economical nitrogen source for biosuccinic acid production by Actinobacillus succinogenes

NASA Astrophysics Data System (ADS)

Tan, J. P.; Jahim, J. M.; Wu, T. Y.; Harun, S.; Mumtaz, T.

2016-06-01

Expensive raw materials are the driving force that leads to the shifting of the petroleum-based succinic acid production into bio-based succinic acid production by microorganisms. Cost of fermentation medium is among the main factors contributing to the total production cost of bio-succinic acid. After carbon source, nitrogen source is the second largest component of the fermentation medium, the cost of which has been overlooked for the past years. The current study aimed at replacing yeast extract- a costly nitrogen source with corn steep liquor for economical production of bio-succinic acid by Actinobacillus succinogenes 130Z. In this study, a final succinic acid concentration of 20.6 g/L was obtained from the use of corn steep liquor as the nitrogen source, which was comparable with the use of yeast extract as the nitrogen source that had a final succinate concentration of 21.4 g/l. In terms of economical wise, corn steep liquor was priced at 200 /ton, which was one fifth of the cost of yeast extract at 1000 /ton. Therefore, corn steep liquor can be considered as a potential nitrogen source in biochemical industries instead of the costly yeast extract.

Effect of steeping temperature on antioxidant and inhibitory activities of green tea extracts against α-amylase, α-glucosidase and intestinal glucose uptake.

PubMed

Liu, Shuyuan; Ai, Zeyi; Qu, Fengfeng; Chen, Yuqiong; Ni, Dejiang

2017-11-01

The objective of the present study was to evaluate the effect of steeping temperature on the biological activities of green tea, including the 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical-scavenging capacity, α-glucosidase and α-amylase inhibitory activities, and glucose uptake inhibitory activity in Caco-2 cells. Results showed that, with increasing extraction temperature, the polyphenol content increased, which contributed to enhance antioxidant activity and inhibitory effects on α-glucosidase and α-amylase. Green tea steeped at 100°C showed the highest DPPH radical-scavenging activity and inhibitory effects on α-glucosidase and α-amylase activities with EC 50 or IC 50 values of 6.15μg/mL, 0.09mg/mL, and 6.31mg/mL, respectively. However, the inhibitory potential on glucose uptake did not show an upward trend with increasing extraction temperature. Green tea steeped at 60°C had significantly stronger glucose uptake inhibitory activity (p<0.05). The integrated data suggested that steeping temperature should be considered when evaluating the biological activities of green tea. Copyright © 2017 Elsevier Ltd. All rights reserved.

UNCOVERING THE INTRINSIC VARIABILITY OF GAMMA-RAY BURSTS

NASA Astrophysics Data System (ADS)

Golkhou, V. Zach; Butler, Nathaniel R

2014-08-01

We develop a robust technique to determine the minimum variability timescale for gamma-ray burst (GRB) light curves, utilizing Haar wavelets. Our approach averages over the data for a given GRB, providing an aggregate measure of signal variation while also retaining sensitivity to narrow pulses within complicated time series. In contrast to previous studies using wavelets, which simply define the minimum timescale in reference to the measurement noise floor, our approach identifies the signature of temporally smooth features in the wavelet scaleogram and then additionally identifies a break in the scaleogram on longer timescales as a signature of a true, temporally unsmooth light curve feature or features. We apply our technique to the large sample of Swift GRB gamma-ray light curves and for the first time—due to the presence of a large number of GRBs with measured redshift—determine the distribution of minimum variability timescales in the source frame. We find a median minimum timescale for long-duration GRBs in the source frame of Δtmin = 0.5 s, with the shortest timescale found being on the order of 10 ms. This short timescale suggests a compact central engine (3000 km). We discuss further implications for the GRB fireball model and present a tantalizing correlation between the minimum timescale and redshift, which may in part be due to cosmological time dilation.

Recent studies on nanosecond-timescale pressurized gas discharges

DOE PAGES

Yatom, S.; Shlapakovski, A.; Beilin, L.; ...

2016-10-05

The results of recent experimental and numerical studies of nanosecond high-voltage discharges in pressurized gases are reviewed. The discharges were ignited in a diode filled by different gases within a wide range of pressures by an applied pulsed voltage or by a laser pulse in the gas-filled charged resonant microwave cavity. Fast-framing imaging of light emission, optical emission spectroscopy, X-ray foil spectrometry and coherent anti-Stokes Raman scattering were used to study temporal and spatial evolution of the discharge plasma density and temperature, energy distribution function of runaway electrons and dynamics of the electric field in the plasma channel. The resultsmore » obtained allow a deeper understanding of discharge dynamical properties in the nanosecond timescale, which is important for various applications of these types of discharges in pressurized gases.« less

Incomplete Thermalization from Trap-Induced Integrability Breaking: Lessons from Classical Hard Rods

NASA Astrophysics Data System (ADS)

Cao, Xiangyu; Bulchandani, Vir B.; Moore, Joel E.

2018-04-01

We study a one-dimensional gas of hard rods trapped in a harmonic potential, which breaks integrability of the hard-rod interaction in a nonuniform way. We explore the consequences of such broken integrability for the dynamics of a large number of particles and find three distinct regimes: initial, chaotic, and stationary. The initial regime is captured by an evolution equation for the phase-space distribution function. For any finite number of particles, this hydrodynamics breaks down and the dynamics becomes chaotic after a characteristic timescale determined by the interparticle distance and scattering length. The system fails to thermalize over the timescale studied (1 04 natural units), but the time-averaged ensemble is a stationary state of the hydrodynamic evolution. We close by discussing logical extensions of the results to similar systems of quantum particles.

Structure and dynamics of GeoCyp: a thermophilic cyclophilin with a novel substrate binding mechanism that functions efficiently at low temperatures

DOE Office of Scientific and Technical Information (OSTI.GOV)

Holliday, Michael; Camilloni, Carlo; Armstrong, Geoffrey S.

2015-05-26

Thermophilic proteins have found extensive use in research and industrial applications due to their high stability and functionality at elevated temperatures while simultaneously providing valuable insight into our understanding of protein folding, stability, dynamics, and function. Cyclophilins, a ubiquitously expressed family of peptidyl-prolyl isomerases with a range of biological functions and disease associations, have been utilized both for conferring stress tolerances and in exploring the link between conformational dynamics and enzymatic function. To date, however, no active thermophilic cyclophilin has been fully biophysically characterized. Here, we determine the structure of a thermophilic cyclophilin (GeoCyp) from Geobacillus kaustophilus, characterize its dynamicmore » motions over several timescales using an array of methodologies that include chemical shift-based methods and relaxation experiments over a range of temperatures, and measure catalytic activity over a range of temperatures in order to compare structure, dynamics, and function to a mesophilic counterpart, human Cyclophilin A (CypA). Unlike most thermophile/mesophile pairs, GeoCyp catalysis is not substantially impaired at low temperatures as compared to CypA, retaining ~70% of the activity of its mesophilic counterpart. Examination of substrate-bound ensembles reveals a mechanism by which the two cyclophilins may have adapted to their environments through altering dynamic loop motions and a critical residue that acts as a clamp to regulate substrate binding differentially in CypA and GeoCyp. Despite subtle differences in conformational movements, dynamics over fast (ps-ns) and slow (μs) timescales are largely conserved between the two proteins.« less

The Ursa Major cluster of galaxies - III. Optical observations of dwarf galaxies and the luminosity function down to MR=-11

NASA Astrophysics Data System (ADS)

Trentham, Neil; Tully, R. Brent; Verheijen, Marc A. W.

2001-07-01

Results are presented of a deep optical survey of the Ursa Major cluster, a spiral-rich cluster of galaxies at a distance of 18.6Mpc which contains about 30 per cent of the light but only 5 per cent of the mass of the nearby Virgo cluster. Fields around known cluster members and a pattern of blind fields along the major and minor axes of the cluster were studied with mosaic CCD cameras on the Canada-France-Hawaii Telescope. The dynamical crossing time for the Ursa Major cluster is only slightly less than a Hubble time. Most galaxies in the local Universe exist in similar moderate-density environments. The Ursa Major cluster is therefore a good place to study the statistical properties of dwarf galaxies, since this structure is at an evolutionary stage representative of typical environments, yet has enough galaxies that reasonable counting statistics can be accumulated. The main observational results of our survey are as follows. (i) The galaxy luminosity function is flat, with a logarithmic slope α=-1.1 for -17

Steep cut slope composting : field trials and evaluation.

DOT National Transportation Integrated Search

2011-04-01

Three different depths of compost and five compost retention techniques were tested to determine : their efficacy and cost effectiveness for increasing the establishment of native grass seedings and decreasing : erosion on steep roadside cut slopes i...

Compost for steep slope erosion.

DOT National Transportation Integrated Search

2008-06-01

This study was initiated to develop guidelines for maintenance erosion control measures for steep slopes. The study focused on evaluating and monitoring KY-31 fescue germination rates using two media treatments 1) 100 percent by weight compost and 2)...

Dynamics of hemispheric specialization and integration in the context of motor control.

PubMed

Serrien, Deborah J; Ivry, Richard B; Swinnen, Stephan P

2006-02-01

Behavioural and neurophysiological evidence convincingly establish that the left hemisphere is dominant for motor skills that are carried out with either hand or those that require bimanual coordination. As well as this prioritization, we argue that specialized functions of the right hemisphere are also indispensable for the realization of goal-directed behaviour. As such, lateralization of motor function is a dynamic and multifaceted process that emerges across different timescales and is contingent on task- and performer-related determinants.

Lagrangian Timescales of Southern Ocean Upwelling in a Hierarchy of Model Resolutions

NASA Astrophysics Data System (ADS)

Drake, Henri F.; Morrison, Adele K.; Griffies, Stephen M.; Sarmiento, Jorge L.; Weijer, Wilbert; Gray, Alison R.

2018-01-01

In this paper we study upwelling pathways and timescales of Circumpolar Deep Water (CDW) in a hierarchy of models using a Lagrangian particle tracking method. Lagrangian timescales of CDW upwelling decrease from 87 years to 31 years to 17 years as the ocean resolution is refined from 1° to 0.25° to 0.1°. We attribute some of the differences in timescale to the strength of the eddy fields, as demonstrated by temporally degrading high-resolution model velocity fields. Consistent with the timescale dependence, we find that an average Lagrangian particle completes 3.2 circumpolar loops in the 1° model in comparison to 0.9 loops in the 0.1° model. These differences suggest that advective timescales and thus interbasin merging of upwelling CDW may be overestimated by coarse-resolution models, potentially affecting the skill of centennial scale climate change projections.

Using plant functional traits to restore Hawaiian rainforest

Treesearch

Rebecca Ostertag; Laura Warman; Susan Cordell; Peter M. Vitousek

2015-01-01

Ecosystem restoration efforts are carried out by a variety of individuals and organizations with an equally varied set of goals, priorities, resources and time-scales. Once restoration of a degraded landscape or community is recognized as necessary, choosing which species to include in a restoration programme can be a difficult and value-laden process (Fry, Power &...

Femtosecond activation of magnetoelectricity

NASA Astrophysics Data System (ADS)

Bossini, D.; Konishi, K.; Toyoda, S.; Arima, T.; Yumoto, J.; Kuwata-Gonokami, M.

2018-04-01

In magnetoelectric and multiferroic materials, the magnetic degree of freedom can be controlled by electric field, and vice versa. A significant amount of research has been devoted to exploiting this effect for magnetoelectric data storage and manipulation devices driven by d.c. electric fields1-4. Aiming at ever-faster schemes of magnetoelectric manipulation, a promising alternative approach offers similar control on a femtosecond timescale, relying on laser pulses4-6 to control both the charge7,8 and the magnetic9,10 order of solids. Here we photo-induce magnetoelectricity and multiferroicity in CuB2O4 on a sub-picosecond timescale. This process is triggered by the resonant optical generation of the highest-energy magnetic excitations—magnons with wavevectors near the edges of the Brillouin zone. The most striking consequence of the photo-excitation is that the absorption of light becomes non-reciprocal, which means that the material exhibits a different transparency for two opposite directions of propagation of light. The photo-induced magnetoelectricity does not show any decay on the picosecond timescale. Our findings uncover a path for ultrafast manipulations of the intrinsic coupling between charges and spins in multiferroics4, which may reveal unexplored magnetic configurations and unravel new functionalities in terms of femtosecond optical control of magnetism.

Not All Larvae Stay Close to Home: Insights into Marine Population Connectivity with a Focus on the Brown Surgeonfish (Acanthurus nigrofuscus)

PubMed Central

Eble, Jeff A.; Rocha, Luiz A.; Craig, Matthew T.; Bowen, Brian W.

2014-01-01

Recent reports of localized larval recruitment in predominately small-range fishes are countered by studies that show high genetic connectivity across large oceanic distances. This discrepancy may result from the different timescales over which genetic and demographic processes operate or rather may indicate regular long-distance dispersal in some species. Here, we contribute an analysis of mtDNA cytochrome b diversity in the widely distributed Brown Surgeonfish (Acanthurus nigrofuscus; N = 560), which revealed significant genetic structure only at the extremes of the range (ΦCT = 0.452; P < .001). Collections from Hawaii to the Eastern Indian Ocean comprise one large, undifferentiated population. This pattern of limited genetic subdivision across reefs of the central Indo-Pacific has been observed in a number of large-range reef fishes. Conversely, small-range fishes are often deeply structured over the same area. These findings demonstrate population connectivity differences among species at biogeographic and evolutionary timescales, which likely translates into differences in dispersal ability at ecological and demographic timescales. While interspecific differences in population connectivity complicate the design of management strategies, the integration of multiscale connectivity patterns into marine resource planning will help ensure long-term ecosystem stability by preserving functionally diverse communities. PMID:25505914

Picosecond sulfur K-edge X-ray absorption spectroscopy with applications to excited state proton transfer

DOE PAGES

Van Kuiken, Benjamin E.; Ross, Matthew R.; Strader, Matthew L.; ...

2017-05-08

Picosecond X-ray absorption (XA) spectroscopy at the S K-edge (~2.4 keV) is demonstrated and used to monitor excited state dynamics in a small organosulfur molecule (2-Thiopyridone, 2TP) following optical excitation. Multiple studies have reported that the thione (2TP) is converted into the thiol (2-Mercaptopyridine, 2MP) following photoexcitation. However, the timescale and photochemical pathway of this reaction remain uncertain. In this work, time-resolved XA spectroscopy at the S K-edge is used to monitor the formation and decay of two transient species following 400nm excitation of 2TP dissolved in acetonitrile. The first transient species forms within the instrument response time (70 ps)more » and decays within 6 ns. The second transient species forms on a timescale of ~400 ps and decays on a 15 ns timescale. Time-dependent density functional theory is used to identify the first and second transient species as the lowestlying triplet states of 2TP and 2MP, respectively. This study demonstrates transient S K-edge XA spectroscopy as a sensitive and viable probe of time-evolving charge dynamics near sulfur sites in small molecules with future applications towards studying complex biological and material systems.« less

Interactions between rate processes with different timescales explain counterintuitive foraging patterns of arctic wintering eiders

PubMed Central

Heath, Joel P.; Gilchrist, H. Grant; Ydenberg, Ronald C.

2010-01-01

To maximize fitness, animals must respond to a variety of processes that operate at different rates or timescales. Appropriate decisions could therefore involve complex interactions among these processes. For example, eiders wintering in the arctic sea ice must consider locomotion and physiology of diving for benthic invertebrates, digestive processing rate and a nonlinear decrease in profitability of diving as currents increase over the tidal cycle. Using a multi-scale dynamic modelling approach and continuous field observations of individuals, we demonstrate that the strategy that maximizes long-term energy gain involves resting during the most profitable foraging period (slack currents). These counterintuitive foraging patterns are an adaptive trade-off between multiple overlapping rate processes and cannot be explained by classical rate-maximizing optimization theory, which only considers a single timescale and predicts a constant rate of foraging. By reducing foraging and instead digesting during slack currents, eiders structure their activity in order to maximize long-term energetic gain over an entire tide cycle. This study reveals how counterintuitive patterns and a complex functional response can result from a simple trade-off among several overlapping rate processes, emphasizing the necessity of a multi-scale approach for understanding adaptive routines in the wild and evaluating mechanisms in ecological time series. PMID:20504814

Wind-Friendly Flexible Ramping Product Design in Multi-Timescale Power System Operations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cui, Mingjian; Zhang, Jie; Wu, Hongyu

With increasing wind power penetration in the electricity grid, system operators are recognizing the need for additional flexibility, and some are implementing new ramping products as a type of ancillary service. However, wind is generally thought of as causing the need for ramping services, not as being a potential source for the service. In this paper, a multi-timescale unit commitment and economic dispatch model is developed to consider the wind power ramping product (WPRP). An optimized swinging door algorithm with dynamic programming is applied to identify and forecast wind power ramps (WPRs). Designed as positive characteristics of WPRs, the WPRPmore » is then integrated into the multi-timescale dispatch model that considers new objective functions, ramping capacity limits, active power limits, and flexible ramping requirements. Numerical simulations on the modified IEEE 118-bus system show the potential effectiveness of WPRP in increasing the economic efficiency of power system operations with high levels of wind power penetration. It is found that WPRP not only reduces the production cost by using less ramping reserves scheduled by conventional generators, but also possibly enhances the reliability of power system operations. Moreover, wind power forecasts play an important role in providing high-quality WPRP service.« less

On the photoresponse of several novel functionalized oligoacene and anthradithiophene derivatives

NASA Astrophysics Data System (ADS)

Day, Jonathan

The results of an investigation into carrier dynamics in several novel functionalized and solution-processable pentacene and anthradithiophene derivatives are reported. Measurements were made of real-time photoresponse of polycrystalline thin films of these materials to ultrafast laser pulses, on picosecond to microsecond time-scales, as well as measurements of dark current and current under steady illumination. This data was taken over varied field-strength, light intensity and temperature. The results support a model for carrier generation and transport with the following features. Carrier photo-generation is assisted weakly, if it is assisted at all, thermally or by applied fields. Carriers are initially (picosecond to nanosecond time-scales) in extended states and transport is "bandlike." Carriers then relax into more localized states, transported via thermally assisted hopping (nanosecond to second time-scales). This model was supported by further experiments with the electric behavior of films prepared from a pure anthradithophene derivative, doped with either the buckminsterfullerene C60 or with other molecular dopants. These results also show that samples with traps of known density and depth can be prepared, as a means of manipulating transport dynamics. The electronic and photo-electronic behaviors of films with self-anodized aluminum and of films with gold electrodes were compared, and a model of the particular energy profile and dynamics which exist at the different interfaces between the films and the different contacts was developed. This model views the metal-organic-metal system as an anode-to-anode Schottky strucure, whose I-V relation is shaped both by the nature of the interface dynamics for different metal contacts, and by the different distributions of space-charge in the thin film between different electrodes.

Gyrokinetic neoclassical study of the bootstrap current in the tokamak edge pedestal with fully non-linear Coulomb collisions

DOE PAGES

Hager, Robert; Chang, C. S.

2016-04-08

As a follow-up on the drift-kinetic study of the non-local bootstrap current in the steep edge pedestal of tokamak plasma by Koh et al. [Phys. Plasmas 19, 072505 (2012)], a gyrokinetic neoclassical study is performed with gyrokinetic ions and drift-kinetic electrons. Besides the gyrokinetic improvement of ion physics from the drift-kinetic treatment, a fully non-linear Fokker-Planck collision operator—that conserves mass, momentum, and energy—is used instead of Koh et al.'s linearized collision operator in consideration of the possibility that the ion distribution function is non-Maxwellian in the steep pedestal. An inaccuracy in Koh et al.'s result is found in the steepmore » edge pedestal that originated from a small error in the collisional momentum conservation. The present study concludes that (1) the bootstrap current in the steep edge pedestal is generally smaller than what has been predicted from the small banana-width (local) approximation [e.g., Sauter et al., Phys. Plasmas 6, 2834 (1999) and Belli et al., Plasma Phys. Controlled Fusion 50, 095010 (2008)], (2) the plasma flow evaluated from the local approximation can significantly deviate from the non-local results, and (3) the bootstrap current in the edge pedestal, where the passing particle region is small, can be dominantly carried by the trapped particles in a broad trapped boundary layer. In conclusion, a new analytic formula based on numerous gyrokinetic simulations using various magnetic equilibria and plasma profiles with self-consistent Grad-Shafranov solutions is constructed.« less

Gyrokinetic neoclassical study of the bootstrap current in the tokamak edge pedestal with fully non-linear Coulomb collisions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hager, Robert; Chang, C. S.

As a follow-up on the drift-kinetic study of the non-local bootstrap current in the steep edge pedestal of tokamak plasma by Koh et al. [Phys. Plasmas 19, 072505 (2012)], a gyrokinetic neoclassical study is performed with gyrokinetic ions and drift-kinetic electrons. Besides the gyrokinetic improvement of ion physics from the drift-kinetic treatment, a fully non-linear Fokker-Planck collision operator—that conserves mass, momentum, and energy—is used instead of Koh et al.'s linearized collision operator in consideration of the possibility that the ion distribution function is non-Maxwellian in the steep pedestal. An inaccuracy in Koh et al.'s result is found in the steepmore » edge pedestal that originated from a small error in the collisional momentum conservation. The present study concludes that (1) the bootstrap current in the steep edge pedestal is generally smaller than what has been predicted from the small banana-width (local) approximation [e.g., Sauter et al., Phys. Plasmas 6, 2834 (1999) and Belli et al., Plasma Phys. Controlled Fusion 50, 095010 (2008)], (2) the plasma flow evaluated from the local approximation can significantly deviate from the non-local results, and (3) the bootstrap current in the edge pedestal, where the passing particle region is small, can be dominantly carried by the trapped particles in a broad trapped boundary layer. In conclusion, a new analytic formula based on numerous gyrokinetic simulations using various magnetic equilibria and plasma profiles with self-consistent Grad-Shafranov solutions is constructed.« less

Gyrokinetic neoclassical study of the bootstrap current in the tokamak edge pedestal with fully non-linear Coulomb collisions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hager, Robert, E-mail: rhager@pppl.gov; Chang, C. S., E-mail: cschang@pppl.gov

As a follow-up on the drift-kinetic study of the non-local bootstrap current in the steep edge pedestal of tokamak plasma by Koh et al. [Phys. Plasmas 19, 072505 (2012)], a gyrokinetic neoclassical study is performed with gyrokinetic ions and drift-kinetic electrons. Besides the gyrokinetic improvement of ion physics from the drift-kinetic treatment, a fully non-linear Fokker-Planck collision operator—that conserves mass, momentum, and energy—is used instead of Koh et al.'s linearized collision operator in consideration of the possibility that the ion distribution function is non-Maxwellian in the steep pedestal. An inaccuracy in Koh et al.'s result is found in the steepmore » edge pedestal that originated from a small error in the collisional momentum conservation. The present study concludes that (1) the bootstrap current in the steep edge pedestal is generally smaller than what has been predicted from the small banana-width (local) approximation [e.g., Sauter et al., Phys. Plasmas 6, 2834 (1999) and Belli et al., Plasma Phys. Controlled Fusion 50, 095010 (2008)], (2) the plasma flow evaluated from the local approximation can significantly deviate from the non-local results, and (3) the bootstrap current in the edge pedestal, where the passing particle region is small, can be dominantly carried by the trapped particles in a broad trapped boundary layer. A new analytic formula based on numerous gyrokinetic simulations using various magnetic equilibria and plasma profiles with self-consistent Grad-Shafranov solutions is constructed.« less

Bottom morphology in the Song Hau distributary channel, Mekong River Delta, Vietnam

NASA Astrophysics Data System (ADS)

Allison, Mead A.; Dallon Weathers, H.; Meselhe, Ehab A.

2017-09-01

Field studies in the Song Hau distributary of the Mekong Delta in Vietnam conducted at high (Sept.-Oct 2014) and low (March 2015) Mekong River discharge are utilized to examine channel bottom morphology and links with sediment transport in the system. Multibeam bathymetric mapping surveys over the entire channel complex in the lower 80 km of the distributary channel, and over 12- to 24-h tidal periods at six transect locations in the reach are used to characterize bottom type and change on seasonal and tidal timescales, supplemented by bottom sampling. The results of this study indicate that the largest proportion of channel floor (up to 80% of the total area) is composed of substratum outcrops of relict sediment units deposited during the progradation of the delta in the last 3.5 ka. These take the form of outcrops that are either (1) steep-sided, tabular channel floor, (2) steep-sided sidewall, or (3) relatively flat channel floor. Flatter outcrops of channel floor substratum are identified by the presence of sedimentary furrows (<0.5 m deep) incised into the channel bottom that are exposed at high discharge and oriented along channel and laterally continuous for kilometers. These furrows are persistent in location and extent across tidal cycles and appear to be incised into relict units, sometimes with a thin surficial layer of modern sediment observable in bottom grabs. The extent of substratum exposure, greater than that observed previously in low tidal energy systems like the Mississippi River, may relate both to a relatively low sand supply from the catchment, and/or to an efficient transfer of both sand and mud through this tidally energetic channel. Sand bottom areas forming dunes, comprise about 19% of the channel floor over the study area and are generally less than a few meters thick except on bar extensions of mid-channel islands. Both sandy and substratum areas are mantled by soft muds 0.25-1 m thick during low discharge in the estuarine section of the study area. This mud mantling appears to be a key control on bottom sourcing of sand to suspension. An understanding of channel bottom morphology, particularly mobility and erodibility of sediments, is valuable for setting up morphodynamic models of channel evolution that can be used to test system response to anthropogenic alterations in the catchment and rising sea levels.

Spatial variations in fluvial incision across the eastern margin of Tibet reveal locus of deformation in the deep crust

NASA Astrophysics Data System (ADS)

Kirby, Eric

2017-04-01

The manifestation of coupling among climate, erosion and tectonics along steep topographic margins of orogenic plateaus is strongly dependent on the processes driving crustal thickening. Along the eastern margin of the Tibetan Plateau, a long-standing and vigorous debate persists over whether mountain building occurred largely along upper-crustal faults or was the consequence of distributed thickening in the lower crust. Here I revisit this debate and show how surface deformation recorded by geomorphology over millennial timescales (10^4-105 yr) can yield insight into the role the deep crust along plateau margins. In contrast to the intensively studied Longmen Shan, the topographic margin of the Tibetan Plateau north of the Sichuan Basin follows the north-south Min Shan and cuts orthogonally across the structural grain of the Mesozoic West Qinling orogen. The lack of a direct association of topography with upper crustal faults affords an opportunity to evaluate the patterns of differential rock uplift from geomorphology. First, I employ an empirical calibration of river profile steepness (channel gradient normalized for drainage basin area) and erosion rate from cosmogenic 10Be concentrations in modern sediment. Application to the channels draining the plateau margin reveals a locus of high (300-500 m/Myr) erosion rate coincident with the Min Shan. Second, I present new results of surveying and dating of fluvial terraces developed along the Bailong Jiang, one of the major rivers draining across the plateau margin. A preliminary chronology of terrace formation and abandonment based on radiocarbon and OSL dating of fluvial deposits reveals systematic spatial gradients in fluvial incision, with highest incision rates (1000-2000 m/Myr) localized along the axis of the Min Shan and decreasing toward both the foreland and the plateau. This locus of incision has apparently been sustained through multiple generations of terrace formation and abandonment since at least 80 ka and thus is interpreted to reflect sustained differential rock uplift along this axis. The wavelength of the region of highest incision rates is 80 km and requires either 1) a deeply buried tip of a blind fault, or 2) thickening in the deep crust. We argue that terrace deformation and associated rock uplift likely reflects flow and thickening of deep Tibetan crust against the foreland of the West Qinling.

What can we learn from "internal plateaus"? The peculiar afterglow of GRB 070110

NASA Astrophysics Data System (ADS)

Beniamini, P.; Mochkovitch, R.

2017-09-01

Context. The origin of the prompt emission of gamma-ray bursts is highly debated. Proposed scenarios involve various dissipation processes (shocks, magnetic reconnection, and inelastic collisions) above or below the photosphere of an ultra-relativistic outflow. Aims: We search for observational features that could help to favour one scenario over the others by constraining the dissipation radius, the magnetization of the outflow, or by indicating the presence of shocks. Bursts showing peculiar behaviours can emphasize the role of a specific physical ingredient, which becomes more apparent under certain circumstances. Methods: We study GRB 070110, which exhibited several remarkable features during its early afterglow; I.e. a very flat plateau terminated by an extremely steep drop and immediately followed by a bump. We modelled the plateau as the photospheric emission from a long-lasting outflow of moderate Lorentz factor (Γ 20), which lags behind an ultra-relativistic (Γ > 100) ejecta that is responsible for the prompt emission. We computed the dissipation of energy in the forward and reverse shocks resulting from the deceleration of this ejecta by the external medium (uniform or stellar wind). Results: We find that photospheric emission from the long-lasting outflow can account for the plateau properties (luminosity and spectrum) assuming that some dissipation takes place in the flow. The geometrical timescale at the photospheric radius is so short that the observed decline at the end of the plateau likely corresponds to the actual shutdown of the activity in the central engine. The bump that follows results from the power dissipated in the reverse shock, which develops when the material making the plateau catches up with the initially fast shell in front, after the fast shell has decelerated. Conclusions: The proposed interpretation suggests that the prompt phase results from dissipation above the photosphere while the plateau has a photospheric origin. If the bump is produced by the reverse shock, it implies an upper limit (σ ≲ 0.1) on the magnetization of the low Γ material making the plateau. A plateau that is terminated by a drop as steep as in GRB 070110 was not observed in any other long burst. It could mean that persistent outflows are very uncommon or that the plateau luminosity or the energy of the emitted photons are generally much lower because the outflow remains mostly adiabatic or has a Lorentz factor below 10.

Spatial variations in fluvial incision across the eastern margin of Tibet reveal locus of thickening in the deep crust

NASA Astrophysics Data System (ADS)

Kirby, Eric; Zhang, Huiping; Chen, Jie

2016-04-01

The manifestation of coupling among climate, erosion and tectonics along steep topographic margins of orogenic plateaus is strongly dependent on the processes driving crustal thickening. Along the eastern margin of the Tibetan Plateau, a long-standing an vigorous debate persists over whether mountain building occurred largely along upper-crustal faults or was the consequence of distributed thickening in the lower crust. Here we revisit this debate and show how surface deformation recorded by geomorphology over millennial timescales (104-105 yr) can yield insight into the role the deep crust along plateau margins. In contrast to the intensively studied Longmen Shan, the topographic margin of the Tibetan Plateau north of the Sichuan Basin follows the north-south Min Shan and cuts orthogonally across the structural grain of the Mesozoic West Qinling orogen. The lack of a direct association of topography with upper crustal faults affords an opportunity to evaluate the patterns of differential rock uplift from geomorphology. First, we employ an empirical calibration of river profile steepness (channel gradient normalized for drainage basin area) and erosion rate from cosmogenic 10Be concentrations in modern sediment. Application to the channels draining the plateau margin reveals a locus of high (300-500 m/Myr) erosion rate coincident with the Min Shan. Second, we present new results of surveying and dating of fluvial terraces developed along the Bailong Jiang, one of the major rivers draining across the plateau margin. A preliminary chronology of terrace tread deposits based on radiocarbon and OSL samples reveals systematic spatial gradients in fluvial incision, with highest incision rates (1000-2000 m/Myr) localized along the axis of the Min Shan and decreasing toward both the foreland and the plateau. This locus of incision has apparently been sustained through multiple generations of terrace formation and abandonment since ca. 80ka and thus is interpreted to reflect sustained differential rock uplift along this axis. The wavelength of the region of highest incision rates is ˜80 km and requires either 1) a deeply buried tip of a blind fault, or 2) thickening in the deep crust. We argue that terrace deformation and associated rock uplift likely reflects flow and thickening of deep Tibetan crust against the foreland of the West Qinling.

Mantle transition zone input to kimberlite magmatism near a subduction zone: Origin of anomalous Nd-Hf isotope systematics at Lac de Gras, Canada

NASA Astrophysics Data System (ADS)

Tappe, Sebastian; Graham Pearson, D.; Kjarsgaard, Bruce A.; Nowell, Geoff; Dowall, David

2013-06-01

Late Cretaceous-Eocene kimberlites from the Lac de Gras area, central Slave craton, show the most extreme Nd-Hf isotope decoupling observed for kimberlites worldwide. They are characterized by a narrow range of moderately enriched Nd isotope compositions (ɛNd(i)=-0.4 to -3.5) that contrasts strongly with their moderately depleted to highly enriched ɛHf(i) values (+3.9 to -9.9). Although digestion of cratonic mantle material in proto-kimberlite melt can theoretically produce steep arrays in Nd-Hf isotope space, the amount of contaminant required to explain the Lac de Gras data is unrealistic. Instead, it is more plausible that mixing of compositionally discrete melt components within an isotopically variable source region is responsible for the steep Nd-Hf isotope array. As development of strongly negative ΔɛHf requires isotopic aging of a precursor material with Sm/Nd≫Lu/Hf for billion-year timescales, a number of models have been proposed where ancient MORB crust trapped in the mantle transition zone is the ultimate source of the extreme Hf isotope signature. However, we provide a conceptual modification and demonstrate that OIB-type domains within ancient subducted oceanic lithosphere can produce much stronger negative ΔɛHf during long-term isolation. Provided that these OIB-type domains have lower melting points compared with associated MORB crust, they are among the first material to melt within the transition zone during thermal perturbations. The resulting hydrous alkali silicate melts react strongly with depleted peridotite at the top of the transition zone and transfer negative ΔɛHf signatures to less dense materials, which can be more easily entrained within upward flowing mantle. Once these entrained refertilized domains rise above 300 km depth, they may become involved in CO2- and H2O-fluxed redox melting of upper mantle peridotite beneath a thick cratonic lid. We argue that incorporation of ancient transition zone material, which includes ultradeep diamonds, into the convecting upper mantle source region of Lac de Gras kimberlites was due to vigorous mantle return flow. This occurred in direct response to fast and complex subduction along the western margin of North America during the Late Cretaceous.

Differential Changes with Age in Multiscale Entropy of Electromyography Signals from Leg Muscles during Treadmill Walking

PubMed Central

Kang, Hyun Gu; Dingwell, Jonathan B.

2016-01-01

Age-related gait changes may be due to the loss of complexity in the neuromuscular system. This theory is disputed due to inconsistent results from single-scale analyses. Also, behavioral adaptations may confound these changes. We examined whether EMG dynamics during gait is less complex in older adults over a range of timescales using the multiscale entropy method, and whether slower walking attenuates this effect. Surface EMG was measured from the left vastus lateralis (VL), biceps femoris (BF), gastrocnemius (GA), and tibialis anterior (TA) in 17 young and 18 older adults as they walked on a treadmill for 5 minutes at 0.8x-1.2x of preferred speed. Sample entropy (SE) and the complexity index (CI) of the EMG signals were calculated after successive coarse-graining to extract dynamics at timescales of 27 to 270 Hz, with m = 2 and r = 0.15 SD. SE and CI were lower across the timescales in older adults in VL and BF, but higher in GA (all p<0.001); these results held for VL and GA even after accounting for longer EMG burst durations in older adults. CI was higher during slower walking speed in VL and BF (p<0.001). Results were mostly similar for m = 3 and r = 0.01–0.35. Smaller r was more sensitive to age-related differences. The decrease in complexity with aging in the timescales studied was limited to proximal muscles, particularly VL. The increase in GA may be driven by other factors. Walking slower may reflect a behavioral adaptation that allows the nervous system to function with greater complexity. PMID:27570974

Decadal-timescale estuarine geomorphic change under future scenarios of climate and sediment supply

USGS Publications Warehouse

Ganju, N.K.; Schoellhamer, D.H.

2010-01-01

Future estuarine geomorphic change, in response to climate change, sea-level rise, and watershed sediment supply, may govern ecological function, navigation, and water quality. We estimated geomorphic changes in Suisun Bay, CA, under four scenarios using a tidal-timescale hydrodynamic/sediment transport model. Computational expense and data needs were reduced using the morphological hydrograph concept and the morphological acceleration factor. The four scenarios included (1) present-day conditions; (2) sea-level rise and freshwater flow changes of 2030; (3) sea-level rise and decreased watershed sediment supply of 2030; and (4) sea-level rise, freshwater flow changes, and decreased watershed sediment supply of 2030. Sea-level rise increased water levels thereby reducing wave-induced bottom shear stress and sediment redistribution during the wind-wave season. Decreased watershed sediment supply reduced net deposition within the estuary, while minor changes in freshwater flow timing and magnitude induced the smallest overall effect. In all future scenarios, net deposition in the entire estuary and in the shallowest areas did not keep pace with sea-level rise, suggesting that intertidal and wetland areas may struggle to maintain elevation. Tidal-timescale simulations using future conditions were also used to infer changes in optical depth: though sea-level rise acts to decrease mean light irradiance, decreased suspended-sediment concentrations increase irradiance, yielding small changes in optical depth. The modeling results also assisted with the development of a dimensionless estuarine geomorphic number representing the ratio of potential sediment import forces to sediment export forces; we found the number to be linearly related to relative geomorphic change in Suisun Bay. The methods implemented here are widely applicable to evaluating future scenarios of estuarine change over decadal timescales. ?? The Author(s) 2009.

Network Bursting Dynamics in Excitatory Cortical Neuron Cultures Results from the Combination of Different Adaptive Mechanism

PubMed Central

Masquelier, Timothée; Deco, Gustavo

2013-01-01

In the brain, synchronization among cells of an assembly is a common phenomenon, and thought to be functionally relevant. Here we used an in vitro experimental model of cell assemblies, cortical cultures, combined with numerical simulations of a spiking neural network (SNN) to investigate how and why spontaneous synchronization occurs. In order to deal with excitation only, we pharmacologically blocked GABAAergic transmission using bicuculline. Synchronous events in cortical cultures tend to involve almost every cell and to display relatively constant durations. We have thus named these “network spikes” (NS). The inter-NS-intervals (INSIs) proved to be a more interesting phenomenon. In most cortical cultures NSs typically come in series or bursts (“bursts of NSs”, BNS), with short (∼1 s) INSIs and separated by long silent intervals (tens of s), which leads to bimodal INSI distributions. This suggests that a facilitating mechanism is at work, presumably short-term synaptic facilitation, as well as two fatigue mechanisms: one with a short timescale, presumably short-term synaptic depression, and another one with a longer timescale, presumably cellular adaptation. We thus incorporated these three mechanisms into the SNN, which, indeed, produced realistic BNSs. Next, we systematically varied the recurrent excitation for various adaptation timescales. Strong excitability led to frequent, quasi-periodic BNSs (CV∼0), and weak excitability led to rare BNSs, approaching a Poisson process (CV∼1). Experimental cultures appear to operate within an intermediate weakly-synchronized regime (CV∼0.5), with an adaptation timescale in the 2–8 s range, and well described by a Poisson-with-refractory-period model. Taken together, our results demonstrate that the INSI statistics are indeed informative: they allowed us to infer the mechanisms at work, and many parameters that we cannot access experimentally. PMID:24146781

When every drop counts: Analysis of Droughts in Brazil for the 1901-2013 period.

PubMed

Awange, Joseph L; Mpelasoka, Freddie; Goncalves, Rodrigo M

2016-10-01

To provide information useful in policy formulation and management of drought impacts in Brazil, in this study, a sequence of drought events based on monthly rainfall of 1901-2013 on ~25 km x 25 km grid are derived at 4 timescales that include short-timescales (3-month and 6-month) and medium to long-timescales (12-month and 24-month). Subsequently, probability of drought occurrences, intensity, duration and areal-extent are calculated. The probabilities of occurrence of severe and extreme droughts at short-timescales are 1 in 12 and 1 in 66 years, respectively, all over the country. At medium to long-timescales, the probability of severe droughts is about 1 in 20 years in northern Brazil, and 1 in 10 years in the south. The probabilities of extreme droughts are 1 in 9 and 1 in 12 years over northern Brazil and in the south, respectively. In general, no evidence of significant (α =0.05) trend is detected in drought frequency, intensity, and duration over the last 11 decades (since 1901) at all the 4 timescales. The drought areal-extent show increasing trends of 3.4%/decade over Brazil for both 3-month and 6-month timescales. However, the trend increases for the 12-month and 24-month timescales are relatively smaller, i.e., 2.4%/decade and 0.5%/decade, respectively. Copyright © 2016 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sun, Yu-Han; Wang, Jun-Xian; Chen, Xiao-Yang

Quasars are variable on timescales from days to years in UV/optical and generally appear bluer while they brighten. The physics behind the variations in fluxes and colors remains unclear. Using Sloan Digital Sky Survey g- and r-band photometric monitoring data for quasars in Stripe 82, we find that although the flux variation amplitude increases with timescale, the color variability exhibits the opposite behavior. The color variability of quasars is prominent at timescales as short as ∼10 days, but gradually reduces toward timescales up to years. In other words, the variable emission at shorter timescales is bluer than that at longermore » timescales. This timescale dependence is clearly and consistently detected at all redshifts from z = 0 to 3.5; thus, it cannot be due to contamination to broadband photometry from emission lines that do not respond to fast continuum variations. The discovery directly rules out the possibility that simply attributes the color variability to contamination from a non-variable redder component such as the host galaxy. It cannot be interpreted as changes in global accretion rate either. The thermal accretion disk fluctuation model is favored in the sense that fluctuations in the inner, hotter region of the disk are responsible for short-term variations, while longer-term and stronger variations are expected from the larger and cooler disk region. An interesting implication is that one can use quasar variations at different timescales to probe disk emission at different radii.« less

An Investigation of the Posterior Component of Occlusal Force

DTIC Science & Technology

1994-05-01

of the hemostat allowed subjects to consistently orient the bite force transducer parallel to the occIusal plane , thus allowing the bite force to be...the anterior component of occlusal force was influenced by the steepness of the occlusal plane . Southard et al (1989) was the first to quantify the...young adult males yielded higher mean maximum bite forces at 20 mm opening and at 40 mm opening. The authors suggested that orientation and function of

Near-Channel Versus Watershed Controls on Sediment Rating Curves

NASA Astrophysics Data System (ADS)

Vaughan, Angus A.; Belmont, Patrick; Hawkins, Charles P.; Wilcock, Peter

2017-10-01

Predicting riverine suspended sediment flux is a fundamental problem in geomorphology, with important implications for water quality, land and water resource management, and aquatic ecosystem health. To advance understanding, we evaluated environmental and landscape factors that influence sediment rating curves (SRCs). We generated SRCs with recent total suspended solids (TSSs) and discharge data from 45 gages on 36 rivers throughout the state of Minnesota, USA. Watersheds range from 32 to 14,600 km2 and represent distinct settings regarding topography, land cover, and geologic history. Rivers exhibited three distinct SRC shapes: simple power functions, threshold power functions, and peaked or negative-slope functions. We computed SRC exponents and coefficients (describing the steepness of the relation and the TSS concentration at median flows, respectively). In addition to quantifying watershed topography, climate/hydrology, geology, soil type, and land cover, we used lidar topography to characterize the near-channel environment upstream of gages. We used random forest models to analyze relations between SRC parameters and attributes of the watershed and the near-channel environment. The models correctly classify 78% of SRC shapes and explain 37%-60% of variance in SRC parameters. We find that SRC steepness (exponent) is strongly related to near-channel morphological characteristics including near-channel relief, channel gradient, and presence of lakes along the local channel network, but not to land use. In contrast, land use influences TSS concentrations at moderate and low flow. These findings suggest that the near-channel environment controls changes in TSS as flows increase, whereas land use drives median and low flow TSS conditions.

Steep cut slope composting : field trials and evaluation : project summary report.

DOT National Transportation Integrated Search

2011-04-01

This project is a continuation of earlier work performed by Montana State University (Jennings et al. 2007) evaluating compost application on, and incorporation into, soils on steep cut slopes for the Montana Department of Transportation (MDT). The e...

Statistics of peak overpressure and shock steepness for linear and nonlinear N-wave propagation in a kinematic turbulence.

PubMed

Yuldashev, Petr V; Ollivier, Sébastien; Karzova, Maria M; Khokhlova, Vera A; Blanc-Benon, Philippe

2017-12-01

Linear and nonlinear propagation of high amplitude acoustic pulses through a turbulent layer in air is investigated using a two-dimensional KZK-type (Khokhlov-Zabolotskaya-Kuznetsov) equation. Initial waves are symmetrical N-waves with shock fronts of finite width. A modified von Kármán spectrum model is used to generate random wind velocity fluctuations associated with the turbulence. Physical parameters in simulations correspond to previous laboratory scale experiments where N-waves with 1.4 cm wavelength propagated through a turbulence layer with the outer scale of about 16 cm. Mean value and standard deviation of peak overpressure and shock steepness, as well as cumulative probabilities to observe amplified peak overpressure and shock steepness, are analyzed. Nonlinear propagation effects are shown to enhance pressure level in random foci for moderate initial amplitudes of N-waves thus increasing the probability to observe highly peaked waveforms. Saturation of the pressure level is observed for stronger nonlinear effects. It is shown that in the linear propagation regime, the turbulence mainly leads to the smearing of shock fronts, thus decreasing the probability to observe high values of steepness, whereas nonlinear effects dramatically increase the probability to observe steep shocks.

The assessment of environmentally sensitive forest road construction in Calabrian pine forest areas of Turkey.

PubMed

Tunay, Metin

2006-07-01

Forest road construction by bulldozers in Calabrian Pine (Pinus brutia Ten.) forests on mountainous terrain of Turkey causes considerable damage to the environment and the forest standing alongside the road. This situation obliges a study of environmentally sound road construction in Turkey. This study was carried out in 4 sample sites of Antalya Forest Directorate in steep (34-50% gradient) and very steep terrain (51-70% gradient) conditions with bulldozer and excavator machine and direct damages to forest during road construction was determined, including forest area losses and damages to downhill trees in mountainous areas. It was determined that in steep terrain when excavators were used, less forest area (22.16%) was destroyed compared to bulldozers and 26.54% less area in very steep terrain. The proportion of damage on trees where bulldozer worked was nearly twofold higher than excavator was used. The results of this research show that the environmentally sensitive techniques applied for the road construction projects are considerably superior to the traditional use of bulldozers on steep slopes. The environmentally sound forest road construction by use of excavator must be considered an appropriate and reliable solution for mountainous terrain where areas of sensitive forest ecosystems are to be opened up.

Evolution of Timescales from Astronomy to Physical Metrology

DTIC Science & Technology

2011-07-20

2000 [7] recommended the use of the ‘non-rotating origin’ both in the Geocentric Celestial Reference System (GCRS) and the International Terrestrial...timescale defined in a geocentric reference frame with the SI second as realized on the rotating geoid as the scale unit’ [30, 31]. This meant that it was...of the new timescale for apparent geocentric ephemerides, will be 1977 January 1d.0003725 (1d 00h 00m 32.184s) exactly. (b) The unit of this timescale

A steep-slope transistor based on abrupt electronic phase transition

NASA Astrophysics Data System (ADS)

Shukla, Nikhil; Thathachary, Arun V.; Agrawal, Ashish; Paik, Hanjong; Aziz, Ahmedullah; Schlom, Darrell G.; Gupta, Sumeet Kumar; Engel-Herbert, Roman; Datta, Suman

2015-08-01

Collective interactions in functional materials can enable novel macroscopic properties like insulator-to-metal transitions. While implementing such materials into field-effect-transistor technology can potentially augment current state-of-the-art devices by providing unique routes to overcome their conventional limits, attempts to harness the insulator-to-metal transition for high-performance transistors have experienced little success. Here, we demonstrate a pathway for harnessing the abrupt resistivity transformation across the insulator-to-metal transition in vanadium dioxide (VO2), to design a hybrid-phase-transition field-effect transistor that exhibits gate controlled steep (`sub-kT/q') and reversible switching at room temperature. The transistor design, wherein VO2 is implemented in series with the field-effect transistor's source rather than into the channel, exploits negative differential resistance induced across the VO2 to create an internal amplifier that facilitates enhanced performance over a conventional field-effect transistor. Our approach enables low-voltage complementary n-type and p-type transistor operation as demonstrated here, and is applicable to other insulator-to-metal transition materials, offering tantalizing possibilities for energy-efficient logic and memory applications.

A steep-slope transistor based on abrupt electronic phase transition.

PubMed

Shukla, Nikhil; Thathachary, Arun V; Agrawal, Ashish; Paik, Hanjong; Aziz, Ahmedullah; Schlom, Darrell G; Gupta, Sumeet Kumar; Engel-Herbert, Roman; Datta, Suman

2015-08-07

Collective interactions in functional materials can enable novel macroscopic properties like insulator-to-metal transitions. While implementing such materials into field-effect-transistor technology can potentially augment current state-of-the-art devices by providing unique routes to overcome their conventional limits, attempts to harness the insulator-to-metal transition for high-performance transistors have experienced little success. Here, we demonstrate a pathway for harnessing the abrupt resistivity transformation across the insulator-to-metal transition in vanadium dioxide (VO2), to design a hybrid-phase-transition field-effect transistor that exhibits gate controlled steep ('sub-kT/q') and reversible switching at room temperature. The transistor design, wherein VO2 is implemented in series with the field-effect transistor's source rather than into the channel, exploits negative differential resistance induced across the VO2 to create an internal amplifier that facilitates enhanced performance over a conventional field-effect transistor. Our approach enables low-voltage complementary n-type and p-type transistor operation as demonstrated here, and is applicable to other insulator-to-metal transition materials, offering tantalizing possibilities for energy-efficient logic and memory applications.

Strained silicon based complementary tunnel-FETs: Steep slope switches for energy efficient electronics

NASA Astrophysics Data System (ADS)

Knoll, L.; Richter, S.; Nichau, A.; Trellenkamp, S.; Schäfer, A.; Wirths, S.; Blaeser, S.; Buca, D.; Bourdelle, K. K.; Zhao, Q.-T.; Mantl, S.

2014-08-01

Electrical characteristics of silicon nanowire tunnel field effect transistors (TFETs) are presented and benchmarked versus other concepts. Particular emphasis is placed on the band to band tunneling (BTBT) junctions, the functional core of the device. Dopant segregation from ion implanted ultrathin silicide contacts is proved as a viable method to achieve steep tunneling junctions. This reduces defect generation by direct implantation into the junction and thus minimizes the risk of trap assisted tunneling. The method is applied to strained silicon, specifically to nanowire array transistors, enabling the realization of n-type and p-type TFETs with fairly high currents and complementary TFET inverters with sharp transitions and good static gain, even at very low drain voltages of VDD = 0.2 V. These achievements suggest a considerable potential of TFETs for ultralow power applications. Gate-all-around Si nanowire array p-type TFETs have been fabricated to demonstrate the impact of electrostatic control on the device performance. A high on-current of 78 μA/μm at VD = VG = 1.1 V is obtained.

Morphological dynamics of mitochondria--a special emphasis on cardiac muscle cells.

PubMed

Hom, Jennifer; Sheu, Shey-Shing

2009-06-01

Mitochondria play a critical role in cellular energy metabolism, Ca(2+) homeostasis, reactive oxygen species generation, apoptosis, aging, and development. Many recent publications have shown that a continuous balance of fusion and fission of these organelles is important in maintaining their proper function. Therefore, there is a steep correlation between the form and function of mitochondria. Many major proteins involved in mitochondrial fusion and fission have been identified in different cell types, including heart. However, the functional role of mitochondrial dynamics in the heart remains, for the most part, unexplored. In this review we will cover the recent field of mitochondrial dynamics and its physiological and pathological implications, with a particular emphasis on the experimental and theoretical basis of mitochondrial dynamics in the heart.

Discovery of a Similar to 5 Day Characteristic Timescale in the Kepler Power Spectrum of Zw 229-15

NASA Technical Reports Server (NTRS)

Edelson, R.; Vaughan, S.; Malkan, M.; Kelly, B. C.; Smith, K. L.; Boyd, P. T.; Mushotzky, R.

2014-01-01

We present time series analyses of the full Kepler dataset of Zw 229- 15. This Kepler light curve- with a baseline greater than three years, composed of virtually continuous, evenly sampled 30-minute measurements - is unprecedented in its quality and precision. We utilize two methods of power spectral analysis to investigate the optical variability and search for evidence of a bend frequency associated with a characteristic optical variability timescale. Each method yields similar results. The first interpolates across data gaps to use the standard Fourier periodogram. The second, using the CARMA-based time-domain modeling technique of Kelly et al., does not need evenly-sampled data. Both methods find excess power at high frequencies that may be due to Kepler instrumental effects. More importantly both also show strong bends (delta alpha is approx. 2) at timescales of approx. 5 days, a feature similar to those seen in the X-ray PSDs of AGN but never before in the optical. This observed approx. 5 day timescale may be associated with one of several physical processes potentially responsible for the variability. A plausible association could be made with light -crossing, dynamical or thermal timescales, depending on the assumed value of the accretion disk size and on unobserved disk parameters such as alpha and H¬R. This timescale is not consistent with the viscous timescale, which would be years in a approx. 10(exp7) solar mass AGN such as Zw 229- 15. However there must be a second bend on long (& 1 year) timescales, and that feature could be associated with the viscous timescale.

Complex networks of functional connectivity in a wetland reconnected to its floodplain

USGS Publications Warehouse

Larsen, Laurel G.; Newman, Susan; Saunders, Colin; Harvey, Judson

2017-01-01

Disturbances such as fire or flood, in addition to changing the local magnitude of ecological, hydrological, or biogeochemical processes, can also change their functional connectivity—how those processes interact in space. Complex networks offer promise for quantifying functional connectivity in watersheds. The approach resolves connections between nodes in space based on statistical similarities in perturbation signals (derived from solute time series) and is sensitive to a wider range of timescales than traditional mass-balance modeling. We use this approach to test hypotheses about how fire and flood impact ecological and biogeochemical dynamics in a wetland (Everglades, FL, USA) that was reconnected to its floodplain. Reintroduction of flow pulses after decades of separation by levees fundamentally reconfigured functional connectivity networks. The most pronounced expansion was that of the calcium network, which reflects periphyton dynamics and may represent an indirect influence of elevated nutrients, despite the comparatively smaller observed expansion of phosphorus networks. With respect to several solutes, periphyton acted as a “biotic filter,” shifting perturbations in water-quality signals to different timescales through slow but persistent transformations of the biotic community. The complex-networks approach also revealed portions of the landscape that operate in fundamentally different regimes with respect to dissolved oxygen, separated by a threshold in flow velocity of 1.2 cm/s, and suggested that complete removal of canals may be needed to restore connectivity with respect to biogeochemical processes. Fire reconfigured functional connectivity networks in a manner that reflected localized burn severity, but had a larger effect on the magnitude of solute concentrations.

Molecular dynamics simulations of viral RNA polymerases link conserved and correlated motions of functional elements to fidelity

PubMed Central

Moustafa, Ibrahim M.; Shen, Hujun; Morton, Brandon; Colina, Coray M.; Cameron, Craig E.

2011-01-01

The viral RNA-dependent RNA polymerase (RdRp) is essential for multiplication of all RNA viruses. The sequence diversity of an RNA virus population contributes to its ability to infect the host. This diversity emanates from errors made by the RdRp during RNA synthesis. The physical basis for RdRp fidelity is unclear but is linked to conformational changes occurring during the nucleotide-addition cycle. To understand RdRp dynamics that might influence RdRp function, we have analyzed all-atom molecular dynamics (MD) simulations on the nanosecond timescale of four RdRps from the picornavirus family that exhibit 30–74% sequence identity. Principal component analysis showed that the major motions observed during the simulations derived from conserved structural motifs and regions of known function. Dynamics of residues participating in the same biochemical property, for example RNA binding, nucleotide binding or catalysis, were correlated even when spatially distant on the RdRp structure. The conserved and correlated dynamics of functional, structural elements suggest co-evolution of dynamics with structure and function of the RdRp. Crystal structures of all picornavirus RdRps exhibit a template-nascent RNA duplex channel too small to fully accommodate duplex RNA. Simulations revealed opening and closing motions of the RNA and NTP channels, which might be relevant to NTP entry, PPi exit and translocation. A role for nanosecond timescale dynamics in RdRp fidelity is supported by altered dynamics of the high-fidelity G64S derivative of PV RdRp relative to wild-type enzyme. PMID:21575642

Complex networks of functional connectivity in a wetland reconnected to its floodplain

NASA Astrophysics Data System (ADS)

Larsen, Laurel G.; Newman, Susan; Saunders, Colin; Harvey, Judson W.

2017-07-01

Disturbances such as fire or flood, in addition to changing the local magnitude of ecological, hydrological, or biogeochemical processes, can also change their functional connectivity—how those processes interact in space. Complex networks offer promise for quantifying functional connectivity in watersheds. The approach resolves connections between nodes in space based on statistical similarities in perturbation signals (derived from solute time series) and is sensitive to a wider range of timescales than traditional mass-balance modeling. We use this approach to test hypotheses about how fire and flood impact ecological and biogeochemical dynamics in a wetland (Everglades, FL, USA) that was reconnected to its floodplain. Reintroduction of flow pulses after decades of separation by levees fundamentally reconfigured functional connectivity networks. The most pronounced expansion was that of the calcium network, which reflects periphyton dynamics and may represent an indirect influence of elevated nutrients, despite the comparatively smaller observed expansion of phosphorus networks. With respect to several solutes, periphyton acted as a "biotic filter," shifting perturbations in water-quality signals to different timescales through slow but persistent transformations of the biotic community. The complex-networks approach also revealed portions of the landscape that operate in fundamentally different regimes with respect to dissolved oxygen, separated by a threshold in flow velocity of 1.2 cm/s, and suggested that complete removal of canals may be needed to restore connectivity with respect to biogeochemical processes. Fire reconfigured functional connectivity networks in a manner that reflected localized burn severity, but had a larger effect on the magnitude of solute concentrations.

Stochastic dynamics of genetic broadcasting networks

NASA Astrophysics Data System (ADS)

Potoyan, Davit; Wolynes, Peter

The complex genetic programs of eukaryotic cells are often regulated by key transcription factors occupying or clearing out of a large number of genomic locations. Orchestrating the residence times of these factors is therefore important for the well organized functioning of a large network. The classic models of genetic switches sidestep this timing issue by assuming the binding of transcription factors to be governed entirely by thermodynamic protein-DNA affinities. Here we show that relying on passive thermodynamics and random release times can lead to a ''time-scale crisis'' of master genes that broadcast their signals to large number of binding sites. We demonstrate that this ''time-scale crisis'' can be resolved by actively regulating residence times through molecular stripping. We illustrate these ideas by studying the stochastic dynamics of the genetic network of the central eukaryotic master regulator NFκB which broadcasts its signals to many downstream genes that regulate immune response, apoptosis etc.

Elastically driven intermittent microscopic dynamics in soft solids

NASA Astrophysics Data System (ADS)

Bouzid, Mehdi; Colombo, Jader; Barbosa, Lucas Vieira; Del Gado, Emanuela

2017-06-01

Soft solids with tunable mechanical response are at the core of new material technologies, but a crucial limit for applications is their progressive aging over time, which dramatically affects their functionalities. The generally accepted paradigm is that such aging is gradual and its origin is in slower than exponential microscopic dynamics, akin to the ones in supercooled liquids or glasses. Nevertheless, time- and space-resolved measurements have provided contrasting evidence: dynamics faster than exponential, intermittency and abrupt structural changes. Here we use 3D computer simulations of a microscopic model to reveal that the timescales governing stress relaxation, respectively, through thermal fluctuations and elastic recovery are key for the aging dynamics. When thermal fluctuations are too weak, stress heterogeneities frozen-in upon solidification can still partially relax through elastically driven fluctuations. Such fluctuations are intermittent, because of strong correlations that persist over the timescale of experiments or simulations, leading to faster than exponential dynamics.

Self-peeling of impacting droplets

NASA Astrophysics Data System (ADS)

de Ruiter, Jolet; Soto, Dan; Varanasi, Kripa K.

2018-01-01

Whether an impacting droplet sticks or not to a solid surface has been conventionally controlled by functionalizing the target surface or by using additives in the drop. Here we report on an unexpected self-peeling phenomenon that can happen even on smooth untreated surfaces by taking advantage of the solidification of the impacting drop and the thermal properties of the substrate. We control this phenomenon by tuning the coupling of the short-timescale fluid dynamics--leading to interfacial defects upon local freezing--and the longer-timescale thermo-mechanical stresses--leading to global deformation. We establish a regime map that predicts whether a molten metal drop impacting onto a colder substrate will bounce, stick or self-peel. In many applications, avoiding adhesion of impacting droplets around designated target surfaces can be as crucial as bonding onto them to minimize waste or cleaning. These insights have broad applicability in processes ranging from thermal spraying and additive manufacturing to extreme ultraviolet lithography.

Simplification of reversible Markov chains by removal of states with low equilibrium occupancy.

PubMed

Ullah, Ghanim; Bruno, William J; Pearson, John E

2012-10-21

We present a practical method for simplifying Markov chains on a potentially large state space when detailed balance holds. A simple and transparent technique is introduced to remove states with low equilibrium occupancy. The resulting system has fewer parameters. The resulting effective rates between the remaining nodes give dynamics identical to the original system's except on very fast timescales. This procedure amounts to using separation of timescales to neglect small capacitance nodes in a network of resistors and capacitors. We illustrate the technique by simplifying various reaction networks, including transforming an acyclic four-node network to a three-node cyclic network. For a reaction step in which a ligand binds, the law of mass action implies a forward rate proportional to ligand concentration. The effective rates in the simplified network are found to be rational functions of ligand concentration. Copyright © 2012 Elsevier Ltd. All rights reserved.

Exploring RNA structure and dynamics through enhanced sampling simulations.

PubMed

Mlýnský, Vojtěch; Bussi, Giovanni

2018-04-01

RNA function is intimately related to its structural dynamics. Molecular dynamics simulations are useful for exploring biomolecular flexibility but are severely limited by the accessible timescale. Enhanced sampling methods allow this timescale to be effectively extended in order to probe biologically relevant conformational changes and chemical reactions. Here, we review the role of enhanced sampling techniques in the study of RNA systems. We discuss the challenges and promises associated with the application of these methods to force-field validation, exploration of conformational landscapes and ion/ligand-RNA interactions, as well as catalytic pathways. Important technical aspects of these methods, such as the choice of the biased collective variables and the analysis of multi-replica simulations, are examined in detail. Finally, a perspective on the role of these methods in the characterization of RNA dynamics is provided. Copyright © 2018 Elsevier Ltd. All rights reserved.

The dynamics of single protein molecules is non-equilibrium and self-similar over thirteen decades in time

NASA Astrophysics Data System (ADS)

Hu, Xiaohu; Hong, Liang; Dean Smith, Micholas; Neusius, Thomas; Cheng, Xiaolin; Smith, Jeremy C.

2016-02-01

Internal motions of proteins are essential to their function. The time dependence of protein structural fluctuations is highly complex, manifesting subdiffusive, non-exponential behaviour with effective relaxation times existing over many decades in time, from ps up to ~102 s (refs ,,,). Here, using molecular dynamics simulations, we show that, on timescales from 10-12 to 10-5 s, motions in single proteins are self-similar, non-equilibrium and exhibit ageing. The characteristic relaxation time for a distance fluctuation, such as inter-domain motion, is observation-time-dependent, increasing in a simple, power-law fashion, arising from the fractal nature of the topology and geometry of the energy landscape explored. Diffusion over the energy landscape follows a non-ergodic continuous time random walk. Comparison with single-molecule experiments suggests that the non-equilibrium self-similar dynamical behaviour persists up to timescales approaching the in vivo lifespan of individual protein molecules.

Not even wrong: A philosophical, historical and ultimately a scientific inquiry into the Schmidt Law

NASA Astrophysics Data System (ADS)

Madore, Barry F.; Carlson, Erika K.

2017-03-01

We introduce a novel approach to interpreting the well-known spatial correlation of gas densities with on-going star formation. Treated as a closed-loop process involving two physically distinct phases the data can be subdivided into regions that are active and those that are quiescent. The active regions can be distinguished by the presence of high-mass, short-lived, but recently-formed OB stars; the quiescent regions are marked by an absence of these stars and they are considered to be recovering from the last star-formation event and are re-collapsing. The relative (areal) frequencies of those two phases are directly proportional to the relative timescales. For four Local Group galaxies, NGC 6822, the Large & Small Magellanic Clouds, and M33, the cloud assembly/collapse timescales are all found to be monotonically decreasing power-law functions of density, with as yet to be explained differences.

Disorder-assisted quantum transport in suboptimal decoherence regimes

PubMed Central

Novo, Leonardo; Mohseni, Masoud; Omar, Yasser

2016-01-01

We investigate quantum transport in binary tree structures and in hypercubes for the disordered Frenkel-exciton Hamiltonian under pure dephasing noise. We compute the energy transport efficiency as a function of disorder and dephasing rates. We demonstrate that dephasing improves transport efficiency not only in the disordered case, but also in the ordered one. The maximal transport efficiency is obtained when the dephasing timescale matches the hopping timescale, which represent new examples of the Goldilocks principle at the quantum scale. Remarkably, we find that in weak dephasing regimes, away from optimal levels of environmental fluctuations, the average effect of increasing disorder is to improve the transport efficiency until an optimal value for disorder is reached. Our results suggest that rational design of the site energies statistical distributions could lead to better performances in transport systems at nanoscale when their natural environments are far from the optimal dephasing regime. PMID:26726133

Beyond mechanistic interaction: value-based constraints on meaning in language.

PubMed

Rączaszek-Leonardi, Joanna; Nomikou, Iris

2015-01-01

According to situated, embodied, and distributed approaches to cognition, language is a crucial means for structuring social interactions. Recent approaches that emphasize this coordinative function treat language as a system of replicable constraints on individual and interactive dynamics. In this paper, we argue that the integration of the replicable-constraints approach to language with the ecological view on values allows for a deeper insight into processes of meaning creation in interaction. Such a synthesis of these frameworks draws attention to important sources of structuring interactions beyond the sheer efficiency of a collective system in its current task situation. Most importantly, the workings of linguistic constraints will be shown as embedded in more general fields of values, which are realized on multiple timescales. Because the ontogenetic timescale offers a convenient window into the emergence of linguistic constraints, we present illustrations of concrete mechanisms through which values may become embodied in language use in development.

Reconstructing disturbances and their biogeochemical consequences over multiple timescales

USGS Publications Warehouse

McLauchlan, Kendra K.; Higuera, Philip E.; Gavin, Daniel G.; Perakis, Steven S.; Mack, Michelle C.; Alexander, Heather; Battles, John; Biondi, Franco; Buma, Brian; Colombaroli, Daniele; Enders, Sara K.; Engstrom, Daniel R.; Hu, Feng Sheng; Marlon, Jennifer R.; Marshall, John; McGlone, Matt; Morris, Jesse L.; Nave, Lucas E.; Shuman, Bryan; Smithwick, Erica A.H.; Urrego, Dunia H.; Wardle, David A.; Williams, Christopher J.; Williams, Joseph J.

2014-01-01

Ongoing changes in disturbance regimes are predicted to cause acute changes in ecosystem structure and function in the coming decades, but many aspects of these predictions are uncertain. A key challenge is to improve the predictability of postdisturbance biogeochemical trajectories at the ecosystem level. Ecosystem ecologists and paleoecologists have generated complementary data sets about disturbance (type, severity, frequency) and ecosystem response (net primary productivity, nutrient cycling) spanning decadal to millennial timescales. Here, we take the first steps toward a full integration of these data sets by reviewing how disturbances are reconstructed using dendrochronological and sedimentary archives and by summarizing the conceptual frameworks for carbon, nitrogen, and hydrologic responses to disturbances. Key research priorities include further development of paleoecological techniques that reconstruct both disturbances and terrestrial ecosystem dynamics. In addition, mechanistic detail from disturbance experiments, long-term observations, and chronosequences can help increase the understanding of ecosystem resilience.

Improved numerical modelling of morphodynamics of rivers with steep banks

USDA-ARS?s Scientific Manuscript database

The flow and sediment transport processes near steep streambanks, which are commonly found in meandering, braided, and anastomosing stream systems, exhibit complex patterns. The interactions between bed and bank morphologic adjustment, and their governing processes are still not well understood. Inc...

Felling and bunching small timber on steep slopes.

Treesearch

Rodger A. Arola; Edwin S. Miyata; John A. Sturos; Helmuth M. Steinhilb

1981-01-01

Discusses the results of a field test of the unique Menzi Muck machine for felling and bunching small trees on steep slopes. Includes the analysis of a detailed time study to determine the productivity, costs, and economic feasibility of this unusual machine.

Interrill soil erosion processes on steep slopes

USDA-ARS?s Scientific Manuscript database

To date interrill erosion processes and regimes are not fully understood. The objectives are to 1) identify the erosion regimes and limiting processes between detachment and transport on steep slopes, 2) characterize the interactive effects between rainfall intensity and flow depth on sediment trans...

Defining and measuring the mean residence time of lateral surface transient storage zones in small streams

Treesearch

T.R. Jackson; R. Haggerty; S.V. Apte; A. Coleman; K.J. Drost

2012-01-01

Surface transient storage (STS) has functional significance in stream ecosystems because it increases solute interaction with sediments. After volume, mean residence time is the most important metric of STS, but it is unclear how this can be measured accurately or related to other timescales and field-measureable parameters. We studied mean residence time of lateral...

Toward a predictive model for the failure of elastomer seals.

NASA Astrophysics Data System (ADS)

Molinari, Nicola; Khawaja, Musab; Sutton, Adrian; Mostofi, Arash; Baker Hughes Collaboration

Nitrile butadiene rubber (NBR) and hydrogenated-NBR (HNBR) are widely used elastomers, especially as seals in oil and gas industry. During exposure to the extreme temperatures and pressures typical of well-hole conditions, ingress of gases causes degradation of performance, including mechanical failure. Using computer simulations, we investigate this problem at two different length- and time-scales. First, starting with our model of NBR based on the OPLS all-atom force-field, we develop a chemically-inspired description of HNBR, where C=C double bonds are saturated with either hydrogen or intramolecular cross-links, mimicking the hydrogenation of NBR to form HNBR. We validate against trends for the mass density and glass transition temperature for HNBR as a function of cross-link density, and for NBR as a function of the fraction of acrylonitrile in the copolymer. Second, a coarse-grained approach is taken in order to study mechanical behaviour and to overcome the length- and time-scale limitations inherent to the all-atom model. The effect of nanoparticle fillers added to the elastomer matrix is investigated. Our initial focus is on understanding the mechanical properties at the elevated temperatures and pressures experienced in well-hole conditions. Baker Hughes.

Toward a predictive model for elastomer seals

NASA Astrophysics Data System (ADS)

Molinari, Nicola; Khawaja, Musab; Sutton, Adrian; Mostofi, Arash

Nitrile butadiene rubber (NBR) and hydrogenated-NBR (HNBR) are widely used elastomers, especially as seals in oil and gas applications. During exposure to well-hole conditions, ingress of gases causes degradation of performance, including mechanical failure. We use computer simulations to investigate this problem at two different length and time-scales. First, we study the solubility of gases in the elastomer using a chemically-inspired description of HNBR based on the OPLS all-atom force-field. Starting with a model of NBR, C=C double bonds are saturated with either hydrogen or intramolecular cross-links, mimicking the hydrogenation of NBR to form HNBR. We validate against trends for the mass density and glass transition temperature for HNBR as a function of cross-link density, and for NBR as a function of the fraction of acrylonitrile in the copolymer. Second, we study mechanical behaviour using a coarse-grained model that overcomes some of the length and time-scale limitations of an all-atom approach. Nanoparticle fillers added to the elastomer matrix to enhance mechanical response are also included. Our initial focus is on understanding the mechanical properties at the elevated temperatures and pressures experienced in well-hole conditions.

Beyond negative valence: 2-week administration of a serotonergic antidepressant enhances both reward and effort learning signals

PubMed Central

Kolling, Nils; Nelissen, Natalie; Browning, Michael; Rushworth, Matthew F. S.; Harmer, Catherine J.

2017-01-01

To make good decisions, humans need to learn about and integrate different sources of appetitive and aversive information. While serotonin has been linked to value-based decision-making, its role in learning is less clear, with acute manipulations often producing inconsistent results. Here, we show that when the effects of a selective serotonin reuptake inhibitor (SSRI, citalopram) are studied over longer timescales, learning is robustly improved. We measured brain activity with functional magnetic resonance imaging (fMRI) in volunteers as they performed a concurrent appetitive (money) and aversive (effort) learning task. We found that 2 weeks of citalopram enhanced reward and effort learning signals in a widespread network of brain regions, including ventromedial prefrontal and anterior cingulate cortex. At a behavioral level, this was accompanied by more robust reward learning. This suggests that serotonin can modulate the ability to learn via a mechanism that is independent of stimulus valence. Such effects may partly underlie SSRIs’ impact in treating psychological illnesses. Our results highlight both a specific function in learning for serotonin and the importance of studying its role across longer timescales. PMID:28207733

Communication: Two-step explosion processes of highly charged fullerene cations C{sub 60}{sup q+} (q = 20–60)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yamazaki, Kaoru; Nakamura, Takashi; Kanno, Manabu

2014-09-28

To establish the fundamental understanding of the fragmentation dynamics of highly positive charged nano- and bio-materials, we carried out on-the-fly classical trajectory calculations on the fragmentation dynamics of C{sub 60}{sup q+} (q = 20–60). We used the UB3LYP/3-21G level of density functional theory and the self-consistent charge density-functional based tight-binding theory. For q ≥ 20, we found that a two-step explosion mechanism governs the fragmentation dynamics: C{sub 60}{sup q+} first ejects singly and multiply charged fast atomic cations C{sup z+} (z ≥ 1) via Coulomb explosions on a timescale of 10 fs to stabilize the remaining core cluster. Thermal evaporationsmore » of slow atomic and molecular fragments from the core cluster subsequently occur on a timescale of 100 fs to 1 ps. Increasing the charge q makes the fragments smaller. This two-step mechanism governs the fragmentation dynamics in the most likely case that the initial kinetic energy accumulated upon ionization to C{sub 60}{sup q+} by ion impact or X-ray free electron laser is larger than 100 eV.« less

The Galaxy mass function up to z =4 in the GOODS-MUSIC sample: into the epoch of formation of massive galaxies

NASA Astrophysics Data System (ADS)

Fontana, A.; Salimbeni, S.; Grazian, A.; Giallongo, E.; Pentericci, L.; Nonino, M.; Fontanot, F.; Menci, N.; Monaco, P.; Cristiani, S.; Vanzella, E.; de Santis, C.; Gallozzi, S.

2006-12-01

Aims.The goal of this work is to measure the evolution of the Galaxy Stellar Mass Function and of the resulting Stellar Mass Density up to redshift ≃4, in order to study the assembly of massive galaxies in the high redshift Universe. Methods: .We have used the GOODS-MUSIC catalog, containing 3000 Ks-selected galaxies with multi-wavelength coverage extending from the U band to the Spitzer 8 μm band, of which 27% have spectroscopic redshifts and the remaining fraction have accurate photometric redshifts. On this sample we have applied a standard fitting procedure to measure stellar masses. We compute the Galaxy Stellar Mass Function and the resulting Stellar Mass Density up to redshift ≃4, taking into proper account the biases and incompleteness effects. Results: .Within the well known trend of global decline of the Stellar Mass Density with redshift, we show that the decline of the more massive galaxies may be described by an exponential timescale of ≃6 Gyr up to z≃ 1.5, and proceeds much faster thereafter, with an exponential timescale of ≃0.6 Gyr. We also show that there is some evidence for a differential evolution of the Galaxy Stellar Mass Function, with low mass galaxies evolving faster than more massive ones up to z≃ 1{-}1.5 and that the Galaxy Stellar Mass Function remains remarkably flat (i.e. with a slope close to the local one) up to z≃ 1{-}1.3. Conclusions: .The observed behaviour of the Galaxy Stellar Mass Function is consistent with a scenario where about 50% of present-day massive galaxies formed at a vigorous rate in the epoch between redshift 4 and 1.5, followed by a milder evolution until the present-day epoch.

Effective superelevation for large trucks on sharp curves and steep grades

DOT National Transportation Integrated Search

2002-10-01

This project was undertaken to identify the particular problems faced by trucks on sharp curves on steep grades, such as rebuilt switchback curves on mountainous two-lane, two-way roads and the high speed downgrade curves found on West Virginia's lim...

30 CFR 785.15 - Steep slope mining.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 30 Mineral Resources 3 2010-07-01 2010-07-01 false Steep slope mining. 785.15 Section 785.15 Mineral Resources OFFICE OF SURFACE MINING RECLAMATION AND ENFORCEMENT, DEPARTMENT OF THE INTERIOR SURFACE COAL MINING AND RECLAMATION OPERATIONS PERMITS AND COAL EXPLORATION SYSTEMS UNDER REGULATORY PROGRAMS...

30 CFR 785.15 - Steep slope mining.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 30 Mineral Resources 3 2011-07-01 2011-07-01 false Steep slope mining. 785.15 Section 785.15 Mineral Resources OFFICE OF SURFACE MINING RECLAMATION AND ENFORCEMENT, DEPARTMENT OF THE INTERIOR SURFACE COAL MINING AND RECLAMATION OPERATIONS PERMITS AND COAL EXPLORATION SYSTEMS UNDER REGULATORY PROGRAMS...

When what we need influences what we see: choice of energetic replenishment is linked with perceived steepness.

PubMed

Taylor-Covill, Guy A H; Eves, Frank F

2014-06-01

The apparent steepness of the locomotor challenge presented by hills and staircases is overestimated in explicit awareness. Experimental evidence suggests the visual system may rescale our conscious experience of steepness in line with available energy resources. Skeptics of this "embodied" view argue that such findings reflect experimental demand. This article tested whether perceived steepness was related to resource choices in the built environment. Travelers in a station estimated the slant angle of a 6.45 m staircase (23.4°) either before (N = 302) or after (N = 109) choosing from a selection of consumable items containing differing levels of energetic resources. Participants unknowingly allocated themselves to a quasi-experimental group based on the energetic resources provided by the item they chose. Consistent with a resource based model, individuals that chose items with a greater energy density, or more rapidly available energy, estimated the staircase as steeper than those opting for items that provided less energetic resources. PsycINFO Database Record (c) 2014 APA, all rights reserved.

The stratigraphy of the Steep Rock Group, N.W. Ontario, with evidence of a major unconformity

NASA Technical Reports Server (NTRS)

Wilks, M. E.; Nisbet, E. G.

1986-01-01

The Steep Rock Group is exposed 6 km north of Atikokan, 200 km west of Thunder Bay. It is situated on the southern margin of the Wabigoon Belt of the Archaean Superior Province, N. W. Ontario. Reinvestigation of the geology of the Group has shown that the Group lies unconformably on the Tonalite Complex to the east. This unconformity has been previously suspected, from regional and ine mapping but no conclusive outcrop evidence for its existence has as yet been published. The strike of the group, comprised of Basal Conglomerate, Carbonate Member, Ore Zone and Ashrock is generally north-northwest dipping steeply to the southwest. Of the 7 contacts between the Steep Rock Group and the Tonalite Complex, 3 expose the unconformity (The Headland, S. Roberts Pit, Trueman Point), and 4 are faulted. These three outcrops demonstrate unequivocally that the Steep Rock group was laid down unconformably on the underlying Tonalite Complex, which is circa 3 Ga old.

Distinguishing between tectonic and lithologic controls on bedrock channel longitudinal profiles using cosmogenic 10Be erosion rates and channel steepness index

USGS Publications Warehouse

Cyr, Andrew J.; Granger, Darryl E.; Olivetti, Valerio; Molin, Paola

2014-01-01

Knickpoints in fluvial channel longitudinal profiles and channel steepness index values derived from digital elevation data can be used to detect tectonic structures and infer spatial patterns of uplift. However, changes in lithologic resistance to channel incision can also influence the morphology of longitudinal profiles. We compare the spatial patterns of both channel steepness index and cosmogenic 10Be-determined erosion rates from four landscapes in Italy, where the geology and tectonics are well constrained, to four theoretical predictions of channel morphologies, which can be interpreted as the result of primarily tectonic or lithologic controls. These data indicate that longitudinal profile forms controlled by unsteady or nonuniform tectonics can be distinguished from those controlled by nonuniform lithologic resistance. In each landscape the distribution of channel steepness index and erosion rates is consistent with model predictions and demonstrates that cosmogenic nuclide methods can be applied to distinguish between these two controlling factors.

Kasner solutions, climbing scalars and big-bang singularity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Condeescu, Cezar; Dudas, Emilian, E-mail: cezar.condeescu@roma2.infn.it, E-mail: emilian.dudas@cpht.polytechnique.fr

We elaborate on a recently discovered phenomenon where a scalar field close to big-bang is forced to climb a steep potential by its dynamics. We analyze the phenomenon in more general terms by writing the leading order equations of motion near the singularity. We formulate the conditions for climbing to exist in the case of several scalars and after inclusion of higher-derivative corrections and we apply our results to some models of moduli stabilization. We analyze an example with steep stabilizing potential and notice again a related critical behavior: for a potential steepness above a critical value, going backwards towardsmore » big-bang, the scalar undergoes wilder oscillations, with the steep potential pushing it back at every passage and not allowing the scalar to escape to infinity. Whereas it was pointed out earlier that there are possible implications of the climbing phase to CMB, we point out here another potential application, to the issue of initial conditions in inflation.« less

Bedload fluctuations in a steep macro-rough channel

NASA Astrophysics Data System (ADS)

Ghilardi, Tamara; Franca, Mário J.; Schleiss, Anton J.

2014-05-01

It is known that bedload fluctuates over time in steep rivers with wide grain size distributions, even when conditions of constant sediment feed and water discharge are met. Bedload fluctuations are periodic and related to fluctuations in the flow velocity and channel bed morphology. In cascade morphologies, the presence of large relatively immobile boulders has a strong impact on flow conditions and sediment transport; their influence on bedload fluctuations is considered in this research. Sediment transport fluctuations were investigated in a set of 38 laboratory experiments carried out on a steep tilting flume, under several conditions of constant sediment and water discharge, for three different slopes (S=6.7%, 9.9%, and 13%). The impact of the diameter and spatial density of randomly placed boulders was studied for several flow conditions. Along with the sediment transport and bulk mean flow velocity, the boulder protrusion, boulder surface, and number of hydraulic jumps, which are indicators of the channel morphology, were measured regularly during the experiments. Periodic bedload pulses are clearly visible in the data collected during the experiments, along with well correlated fluctuations in the flow velocity and bed morphology parameters. Well-behaved cyclic oscillations in the auto-correlation and cross-correlation functions confirm the periodicity of the observed fluctuations and show that the durations of these cycles are similar, although not necessarily in phase. A detailed analysis of data time series and image acquired during the tests show a link between bedload pulses and different bed states, boulder protrusion, and surface grain size distributions. A feedback system exists among channel morphology, flow kinematics and sediment transport. A phase analysis for the observed variables, based on the identification of bedload cycles in the instantaneous signal, is performed. The link between the phases of bedload and each of the morphological parameters show a hysteretic path. The relation between the phase-averaged bedload and the phase-averaged flow velocity show a considerable lesser degree of hysteresis. Comparing the phase averaged bedload of the experiments, it is observed that the shape of bedload cycles is the same for all tested hydraulic conditions. The cycles present a long duration low sediment transport event and a shorter peak transport event. This indicates that long periods of sediment aggradations alternate with short erosion periods, even under constant hydraulic conditions. The bedload pulses may be characterized by their amplitude and period as a function of various boulder spatial densities and diameters. We show that for higher stream power, the fluctuations decrease, both in cycle duration and in amplitude. The presence of boulders increases the stream power needed to transport a given amount of sediment, thus decreasing fluctuations. KEY WORDS: Bedload fluctuations; Morphological changes; Sediment transport; Boulders; Steep channel.

Confirmation of a Steep Luminosity Function for Ly alpha Emitters at z 5.7: a Major Component of Reionization

NASA Technical Reports Server (NTRS)

Dressler, Alan; Henry, Alaina L.; Martin, Crystal L.; Sawicki, Marcin; McCarthy, Patrick; Villaneuva, Edward

2014-01-01

We report the first direct and robust measurement of the faint-end slope of the Ly-alpha emitter (LAE) luminosity function at z = 5.7. Candidate LAEs from a low-spectral-resolution blind search with IMACS on Magellan- Baade were targeted at higher resolution to distinguish high redshift LAEs from foreground galaxies. All but 2 of our 42 single-emission-line systems are fainter than F = 2.0×10(exp-17) ergs s(exp-1) cm(exp-2), making these the faintest emission-lines observed for a z = 5.7 sample with known completeness, an essential property for determining the faint end slope of the LAE luminosity function. We find 13 LAEs as compared to 29 foreground galaxies, in very good agreement with the modeled foreground counts predicted in Dressler et al. (2011a) that had been used to estimate a faint-end slope of alpha = -2.0 for the LAE luminosity function. A 32% LAE fraction, LAE/(LAE+foreground) within the flux interval F = 2-20 × 10(exp-18) ergs s(exp-1) cm(exp-2) constrains the faint end slope of the luminosity function to -1.95 greater than alpha greater than -2.35 (1 delta). We show how this steep LF should provide, to the limit of our observations, more than 20% of the flux necessary to maintain ionization at z = 5.7, with a factor-of-ten extrapolation in flux reaching more than 55%. We suggest that this bodes well for a comparable contribution by similar, low-mass star forming galaxies at higher-redshift - within the reionization epoch at z greater than approximately 7, only 250 Myr earlier - and that such systems provide a substantial, if not dominant, contribution to the late-stage reionization of the IGM.

Three-dimensional geometry and tectonostratigraphy of the Pennine zone, Central Alps, Switzerland and Northern Italy

NASA Astrophysics Data System (ADS)

Maxelon, Michael; Mancktelow, Neil S.

2005-08-01

Continental collision during Alpine orogenesis entailed a polyphase deformation history (D 1-D 5) in the Pennine zone of the Central Alps. The regional tectonostratigraphy was basically developed during D 1 and D 2, characterised by isoclinal, typically north-closing recumbent anticlines, separated by pinched-in synclines, on the scale of tens of kilometres. Later deformation phases (D 3 and D 4) warped the stack into wavy to open folds. Exhumation of this zone resulted locally in later vertical shortening and folding of already steep fabrics (D 5). Three-dimensional models of the nappe pile were constructed, based on geostatistical assessment of the regional foliation field and considering the abundant structural field data. These models indicate the existence of five principal tectonostratigraphic levels developed during D 1 and thus equivalent to nappe units s. str.: the Gotthard, the Leventina-Antigorio, the Maggia-Simano (and probably the Monte Leone as well as the Composite Lepontine Series), Lebendun-Soja and Adula-Cima Lunga levels. All these tectonic units formed part of the passive continental margin of Europe prior to the onset of the Alpine orogenesis. Individual isoclinal post-nappe folds reflect relative displacements on the order of 40 km or more. The most prominent D 2 post-nappe structure is the Wandfluhhorn Fold, structurally equivalent to the northern closure of the Leventina-Lucomagno Antiform. The Lebendun and Monte Leone folds are of similar magnitudes and also affect the whole nappe pile, whereas the smaller Mogno and Molare synforms only refold the Maggia-Simano nappe internally. Principal D 3 and D 4 structures are the tight Mergoscia Synform directly north of the Insubric Fault between Bellinzona and Locarno (Southern Steep Belt), the Maggia Steep Zone, forming the steep western limb of the Campo Tencia Synform and subdividing the Lepontine dome into the Simplon and Ticino subdomes, the Chiéra Synform steepening the dominant foliation in the north (Northern Steep Belt) and the Vanzone and Claro Antiforms steepening the dominant foliation in the south (Southern Steep Belt). The current geometry of the Northern and Southern Steep Belts reflects an interplay between D 4 and D 3, involving both fold interference and reactivation/tightening.

Antarctic Peninsula Tidewater Glacier Dynamics

NASA Astrophysics Data System (ADS)

Pettit, E. C.; Scambos, T. A.; Haran, T. M.; Wellner, J. S.; Domack, E. W.; Vernet, M.

2015-12-01

The northern Antarctic Peninsula (nAP, north of 66°S) is a north-south trending mountain range extending transverse across the prevailing westerly winds of the Southern Ocean resulting in an extreme west-to-east precipitation gradient. Snowfall on the west side of the AP is one to two orders of magnitude higher than the east side. This gradient drives short, steep, fast-flowing glaciers into narrow fjords on the west side, while longer lower-sloping glaciers flow down the east side into broader fjord valleys. This pattern in ice dynamics affects ice-ocean interaction on timescales of decades to centuries, and shapes the subglacial topography and submarine bathymetry on timescales of glacial cycles. In our study, we calculate ice flux for the western and eastern nAP using a drainage model that incorporates the modern ice surface topography, the RACMO-2 precipitation estimate, and recent estimates of ice thinning. Our results, coupled with observed rates of ice velocity from InSAR (I. Joughin, personal communication) and Landsat 8 -derived flow rates (this study), provide an estimate of ice thickness and fjord depth in grounded-ice areas for the largest outlet glaciers. East-side glaciers either still terminate in or have recently terminated in ice shelves. Sedimentary evidence from the inner fjords of the western glaciers indicates they had ice shelves during LIA time, and may still have transient floating ice tongues (tabular berg calvings are observed). Although direct oceanographic evidence is limited, the high accumulation rate and rapid ice flux implies cold basal ice for the western nAP glaciers and therefore weak subglacial discharge relative to eastern nAP glaciers and or other tidewater fjord systems such as in Alaska. Finally, despite lower accumulation rates on the east side, the large elongate drainage basins result in a greater ice flux funneled through fewer deeper glaciers. Due to the relation between ice flux and erosion, these east-side glaciers have longer and deeper fjords than the west-side glaciers. These distinct differences between the glaciers of the west and east side of the AP exert a primary control on the differing ice-ocean interactions, grounding-line retreat, and subglacial erosion rates, and provide context to understand rates of nAP ice mass loss.

Structure of the Extended Emission in the Infrared Celestial Background,

DTIC Science & Technology

1986-09-30

the energy cascade to smaller sizes due to turbulence. Such a steep function would predict little energy in microfilaments at the resolution of a meter...Neugebauer, H.H. Aumann, N. Boggess, J.P. Emerson, J.R. Fuck , B.T. Soifer and R.G. Walker, "IRAS Observations of the Diffuse Infrared Background", Astrophys. J...Astrcphys., Vol. 100, 116, 1981. " 80. Little , S.J. and S.D. Price, "Infrared Mapping of the Galactic Plane. IV. The Galactic Center", Astron. J., Vol

Constraints on the formation and properties of a Martian lobate debris apron: Insights from high-resolution topography, SHARAD radar data, and a numerical ice flow model

NASA Astrophysics Data System (ADS)

Parsons, Reid; Holt, John

2016-03-01

Lobate debris aprons (LDAs) are midlatitude deposits of debris-covered ice formed during one or more periods of glaciation during the Amazonian period. However, little is known about the climate conditions that led to LDA formation. We explore a hypothesis in which a single, extended period of precipitation of ice on the steep slopes of Euripus Mons (45°S, 105°E—east of the Hellas Basin) produced a flowing ice deposit which was protected from subsequent ablation to produce the LDA found at this location. We test this hypothesis with a numerical ice flow model using an ice rheology based on low-temperature ice deformation experiments. The model simulates ice accumulation and flow for the northern and southern lobes of the Euripus Mons LDA using basal topography constrained by data from the Shallow Radar (SHARAD) and a range of ice viscosities (determined by ice temperature and ice grain size). Simulations for the northern lobe of the Euripus LDA produce good fits to the surface topography. Assuming an LDA age of ˜60 Myr and an expected temperature range of 200 to 204 K (for various obliquities) gives an ice grain size of ≈2 mm. Simulations of the southern section produce poor fits to surface topography and result in much faster flow timescales unless multiple ice deposition events or higher ice viscosities are considered.

Rise of the central Andean coast by earthquakes straddling the Moho

NASA Astrophysics Data System (ADS)

Melnick, Daniel

2016-05-01

Surface movements during the largest subduction zone earthquakes commonly drown coastlines. Yet, on geological timescales, coastlines above subduction zones uplift. Here I use a morphometric analysis combined with a numerical model of landscape evolution to estimate uplift rates along the central Andean rasa--a low-relief coastal surface bounded by a steep cliff formed by wave erosion. I find that the rasa has experienced steady uplift of 0.13 +/- 0.04 mm per year along a stretch of more than 2,000 km in length, during the Quaternary. These long-term uplift rates do not correlate with Global Positioning System (GPS) measurements of interseismic movements over the decadal scale, which implies that permanent uplift is not predominantly accumulated during the interseismic period. Instead, the rate of rasa uplift correlates with slip during earthquakes straddling the crust-mantle transition, the Moho. Such deeper earthquakes with magnitude 7 to 8 that occurred between 1995 and 2012 resulted in decimetres of coastal uplift. Slip during these earthquakes is located below the locked portion of the plate interface, and therefore may translate into permanent deformation of the overlying plate, where it causes uplift of the coastline. Thus, lower parts of the plate boundary are stably segmented over hundreds to millions of years. I suggest the coastline marks the surface expression of the transition between the shallow, locked seismogenic domain and the deeper, conditionally stable domain where modest earthquakes build up topography.

Geomorphic process fingerprints in submarine canyons

USGS Publications Warehouse

Brothers, Daniel S.; ten Brink, Uri S.; Andrews, Brian D.; Chaytor, Jason D.; Twichell, David C.

2013-01-01

Submarine canyons are common features of continental margins worldwide. They are conduits that funnel vast quantities of sediment from the continents to the deep sea. Though it is known that submarine canyons form primarily from erosion induced by submarine sediment flows, we currently lack quantitative, empirically based expressions that describe the morphology of submarine canyon networks. Multibeam bathymetry data along the entire passive US Atlantic margin (USAM) and along the active central California margin near Monterey Bay provide an opportunity to examine the fine-scale morphology of 171 slope-sourced canyons. Log–log regression analyses of canyon thalweg gradient (S) versus up-canyon catchment area (A) are used to examine linkages between morphological domains and the generation and evolution of submarine sediment flows. For example, canyon reaches of the upper continental slope are characterized by steep, linear and/or convex longitudinal profiles, whereas reaches farther down canyon have distinctly concave longitudinal profiles. The transition between these geomorphic domains is inferred to represent the downslope transformation of debris flows into erosive, canyon-flushing turbidity flows. Over geologic timescales this process appears to leave behind a predictable geomorphic fingerprint that is dependent on the catchment area of the canyon head. Catchment area, in turn, may be a proxy for the volume of sediment released during geomorphically significant failures along the upper continental slope. Focused studies of slope-sourced submarine canyons may provide new insights into the relationships between fine-scale canyon morphology and down-canyon changes in sediment flow dynamics.

Very Large Array Multiband Monitoring Observations of M31*

NASA Astrophysics Data System (ADS)

Yang, Yang; Li, Zhiyuan; Sjouwerman, Loránt O.; Yuan, Feng; Shen, Zhi-Qiang

2017-08-01

The Andromeda galaxy (M31) hosts one of the nearest and most quiescent supermassive black holes, which provides a rare, but promising opportunity for studying the physics of black hole accretion at the lowest state. We have conducted a multifrequency, multi-epoch observing campaign, using the Karl G. Jansky Very Large Array (VLA) in its extended configurations in 2011-2012, to advance our knowledge of the still poorly known radio properties of M31*. For the first time, we detect M31* at 10, 15, and 20 GHz and measure its spectral index, α ≈ -0.45 ± 0.08 (S ν ∝ ν α ), over the frequency range of 5-20 GHz. The relatively steep spectrum suggests that the observed radio flux is dominated by the optically thin part of a putative jet, which is located at no more than a few thousand Schwarzschild radii from the black hole. On the other hand, our sensitive radio images show little evidence for an extended component, perhaps except for several parsec-scale “plumes,” the nature of which remains unclear. Our data also reveal significant (a few tens of percent) flux variation of M31* at 6 GHz, on timescales of hours to days. Furthermore, a curious decrease of the mean flux density, by ˜50%, is found between VLA observations taken during 2002-2005 and our new observations, which might be associated with a substantial increase in the mean X-ray flux of M31* starting in 2006.

Along strike variation of active fault arrays and their effect on landscape morphology of the northwestern Himalaya

NASA Astrophysics Data System (ADS)

Nennewitz, Markus; Thiede, Rasmus; Bookhagen, Bodo

2017-04-01

The location and magnitude of the active deformation of the Himalaya has been debated for decades, but several aspects remain unknown. For instance, the spatial distribution of the deformation and the shortening that ultimately sustains Himalayan topography and the activity of major fault zones are not well constrained neither for the present day and nor for Holocene and Quarternary timescales. Because of these weakly constrained factors, many previous studies have assumed that the structural setting and the fault geometry of the Himalaya is continuous along strike and similar to fault geometries of central Nepal. Thus, the sub-surface structural information from central Nepal have been projected along strike, but have not been verified at other locations. In this study we use digital topographic analysis of the NW Himalaya. We obtained catchment-averaged, normalized steepness indexes of longitudinal river profiles with drainage basins ranging between 5 and 250km2 and analyzed the relative change in their spatial distribution both along and across strike. More specific, we analyzed the relative changes of basins located in the footwall and in the hanging wall of major fault zones. Under the assumption that along strike changes in the normalized steepness index are primarily controlled by the activity of thrust segments, we revealed new insights in the tectonic deformation and uplift pattern. Our results show three different segments along the northwest Himalaya, which are located, from east to west, in Garwhal, Chamba and Kashmir Himalaya. These have formed independent orogenic segments characterized by significant changes in their structural architecture and fault geometry. Moreover, their topographic changes indicate strong variations on fault displacement rates across first-order fault zones. With the help of along- and across-strike profiles, we were able to identify fault segments of pronounced fault activity across MFT, MBT, and the PT2 and identify the location of along strike changes which are interpreted as their segment boundaries. In addition to the steepness indices we use the accumulation of elevation data as a proxy for the strain that has been accumulated over a specific distance. Thus, despite the changes in topography, structural setting, and kinematics along the NW Himalaya we observe that the topography of the orogen is in good agreement with recently measured convergence rates obtained from GPS campaigns. These data suggest reduced crustal shortening towards the northwest. Deformation in the Central Himalaya has been explained either by in-sequence thrusting along the MFT that localize the entire Holocene shortening or a combination of this with out-of-sequence thrusting in the vicinity of the PT2. In contrast to these conceptual models, we propose that the segmented NW Himalaya is a product of the synchronous activity of different fault segments, accommodating the crustal shortening along three independently deforming organic segments. The lateral discontinuity of these segments is responsible for the accommodation of the variation in the deformation and the maintenance of the topography of the Himalaya in NW India.

Hyperpolarized functional magnetic resonance of murine skeletal muscle enabled by multiple tracer-paradigm synchronizations.

PubMed

Leftin, Avigdor; Roussel, Tangi; Frydman, Lucio

2014-01-01

Measuring metabolism's time- and space-dependent responses upon stimulation lies at the core of functional magnetic resonance imaging. While focusing on water's sole resonance, further insight could arise from monitoring the temporal responses arising from the metabolites themselves, in what is known as functional magnetic resonance spectroscopy. Performing these measurements in real time, however, is severely challenged by the short functional timescales and low concentrations of natural metabolites. Dissolution dynamic nuclear polarization is an emerging technique that can potentially alleviate this, as it provides a massive sensitivity enhancement allowing one to probe low-concentration tracers and products in a single-scan. Still, conventional implementations of this hyperpolarization approach are not immediately amenable to the repeated acquisitions needed in real-time functional settings. This work proposes a strategy for functional magnetic resonance of hyperpolarized metabolites that bypasses this limitation, and enables the observation of real-time metabolic changes through the synchronization of stimuli-triggered, multiple-bolus injections of the metabolic tracer 13C1-pyruvate. This new approach is demonstrated with paradigms tailored to reveal in vivo thresholds of murine hind-limb skeletal muscle activation, involving the conversion of 13C1-pyruvate to 13C1-lactate and 13C1-alanine. These functional hind-limb studies revealed that graded skeletal muscle stimulation causes commensurate increases in glycolytic metabolism in a frequency- and amplitude-dependent fashion, that can be monitored on the seconds/minutes timescale using dissolution dynamic nuclear polarization. Spectroscopic imaging further allowed the in vivo visualization of uptake, transformation and distribution of the tracer and products, in fast-twitch glycolytic and in slow-twitch oxidative muscle fiber groups. While these studies open vistas in time and sensitivity for metabolic functional magnetic resonance studies in muscle, the simplicity of our approach makes this technique amenable to a wide range of functional metabolic tracer studies.

Nonadiabatic Dynamics in Single-Electron Tunneling Devices with Time-Dependent Density-Functional Theory

NASA Astrophysics Data System (ADS)

Dittmann, Niklas; Splettstoesser, Janine; Helbig, Nicole

2018-04-01

We simulate the dynamics of a single-electron source, modeled as a quantum dot with on-site Coulomb interaction and tunnel coupling to an adjacent lead in time-dependent density-functional theory. Based on this system, we develop a time-nonlocal exchange-correlation potential by exploiting analogies with quantum-transport theory. The time nonlocality manifests itself in a dynamical potential step. We explicitly link the time evolution of the dynamical step to physical relaxation timescales of the electron dynamics. Finally, we discuss prospects for simulations of larger mesoscopic systems.

Nonadiabatic Dynamics in Single-Electron Tunneling Devices with Time-Dependent Density-Functional Theory.

PubMed

Dittmann, Niklas; Splettstoesser, Janine; Helbig, Nicole

2018-04-13

We simulate the dynamics of a single-electron source, modeled as a quantum dot with on-site Coulomb interaction and tunnel coupling to an adjacent lead in time-dependent density-functional theory. Based on this system, we develop a time-nonlocal exchange-correlation potential by exploiting analogies with quantum-transport theory. The time nonlocality manifests itself in a dynamical potential step. We explicitly link the time evolution of the dynamical step to physical relaxation timescales of the electron dynamics. Finally, we discuss prospects for simulations of larger mesoscopic systems.

Measurement of Posterior Corneal Astigmatism by the IOLMaster 700.

PubMed

LaHood, Benjamin R; Goggin, Michael

2018-05-01

To provide the first description of posterior corneal astigmatism as measured by the IOLMaster 700 (Carl Zeiss Meditec, Jena, Germany) and assess how its characteristics compare to previous measurements from other devices. A total of 1,098 routine IOLMaster 700 biometric measurements were analyzed to provide magnitudes and orientation of steep and flat axes of anterior and posterior corneal astigmatism. Subgroup analysis was conducted to assess correlation of posterior corneal astigmatism characteristics to anterior corneal astigmatism and describe the distribution of posterior corneal astigmatism with age. Mean posterior corneal astigmatism was 0.24 ± 0.15 diopters (D). The steep axis of posterior corneal astigmatism was vertically oriented in 73.32% of measurements. Correlation between the magnitude of anterior and posterior corneal astigmatism was greatest when the steep axis of the anterior corneal astigmatism was oriented vertically (r = 0.68, P < .0001). Vertical orientation of the steep axis of anterior corneal astigmatism became less common as age increased, whereas for posterior corneal astigmatism it remained by far the most common orientation. This first description of posterior corneal astigmatism measurement by the IOLMaster 700 found the average magnitude of posterior corneal astigmatism and proportion of vertical orientation of steep axis was lower than previous estimates. The IOLMaster 700 appears capable of providing enhanced biometric measurement for individualized surgical planning. [J Refract Surg. 2018;34(5):331-336.]. Copyright 2018, SLACK Incorporated.

Germination conditions affect physicochemical properties of germinated brown rice flour.

PubMed

Charoenthaikij, Phantipha; Jangchud, Kamolwan; Jangchud, Anuvat; Piyachomkwan, Kuakoon; Tungtrakul, Patcharee; Prinyawiwatkul, Witoon

2009-01-01

Germinated brown rice has been reported to be nutritious due to increased free gamma-aminobutyric acid (GABA). The physicochemical properties of brown rice (BR) and glutinous brown rice (GNBR) after germination as affected by different steeping times (24, 36, 48, and 72 h depending on the rice variety) and pHs of steeping water (3, 5, 7, and as-is) were determined and compared to those of the nongerminated one (control). As the steeping time increased or pH of steeping water decreased, germinated brown rice flours (GBRF) from both BR and GNBR had greater reducing sugar, free GABA and alpha-amylase activity; while the total starch and viscosity were lower than their respective controls. GBRFs from both BR and GNBR prepared after 24-h steeping time at pH 3 contained a high content of free GABA at 32.70 and 30.69 mg/100 g flour, respectively. The peak viscosity of GBRF obtained from both BR and GNBR (7.42 to 228.22 and 4.42 to 58.67 RVU, respectively) was significantly lower than that of their controls (255.46 and 190.17 RVU, respectively). The principal component analysis indicated that the important variables for discriminating among GBRFs, explained by the first 2 components at 89.82% of total explained variance, were the pasting profiles, alpha-amylase activity, and free GABA.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Edelson, R.; Smith, K. L.; Mushotzky, R.

We present time series analyses of the full Kepler data set of Zw 229–15. This Kepler light curve—with a baseline greater than 3 yr, composed of virtually continuous, evenly sampled 30 minute measurements—is unprecedented in its quality and precision. We utilize two methods of power spectral analysis to investigate the optical variability and search for evidence of a bend frequency associated with a characteristic optical variability timescale. Each method yields similar results. The first interpolates across data gaps to use the standard Fourier periodogram. The second, using the CARMA-based time-domain modeling technique of Kelly et al., does not need evenlymore » sampled data. Both methods find excess power at high frequencies that may be due to Kepler instrumental effects. More importantly, both also show strong bends (Δα ∼ 2) at timescales of ∼5 days, a feature similar to those seen in the X-ray power spectral densities of active galactic nuclei (AGNs) but never before in the optical. This observed ∼5 day timescale may be associated with one of several physical processes potentially responsible for the variability. A plausible association could be made with light-crossing dynamical or thermal timescales depending on the assumed value of the accretion disk size and on unobserved disk parameters such as α and H/R. This timescale is not consistent with the viscous timescale, which would be years in a ∼10{sup 7} M {sub ☉} AGN such as Zw 229–15. However, there must be a second bend on long (≳ 1 yr) timescales and that feature could be associated with the viscous timescale.« less

Mixing in Sessile Drops Merging on a Surface

NASA Astrophysics Data System (ADS)

Anna, Shelley; Zhang, Ying; Oberdick, Samuel; Garoff, Stephen

2011-11-01

We investigate the mixing of two sessile drops that merge on a surface. The drops consist of low viscosity glycerol-water mixtures deposited on a silicone elastomer surface with contact angle near 90°. We observe the shape of the drops and the location of their intersection by placing a fluorescent dye in one drop and using a laser light sheet to image a plane perpendicular to the surface. The initial healing of the meniscus bridge between the merging drops, and the damping of capillary waves appearing on their surfaces occur on timescales comparable to the inertio-capillary relaxation time. However, the interface between the two fluids remains sharp, broadening diffusively over several minutes. The shape of the merged drops and the boundary between them also continues to evolve on a timescale of minutes. This later motion is controlled by gravity, capillary pressure, and viscous stresses. Images of the 3D drop shape indicate that small contact line motions are correlated to the slow relaxation. Although the two drops contain identical liquids except for the presence of the dye, the shape of the interface consistently evolves asymmetrically, assuming a characteristic crescent shape. We note that very tiny surface tension gradients can produce an asymmetric flow like the one observed here. We characterize the long timescale flow as a function of the drop sizes, and we use numerical simulations to aid in elucidating the essential physics.

AGN feedback and the origin of the α enhancement in early-type galaxies - insights from the GAEA model

NASA Astrophysics Data System (ADS)

De Lucia, Gabriella; Fontanot, Fabio; Hirschmann, Michaela

2017-03-01

We take advantage of our recently published model for GAlaxy Evolution and Assembly (GAEA) to study the origin of the observed correlation between [α/Fe] and galaxy stellar mass. In particular, we analyse the role of radio-mode active galactic nuclei (AGN) feedback, which recent work has identified as a crucial ingredient to reproduce observations. In GAEA, this process introduces the observed trend of star formation histories extending over shorter time-scales for more massive galaxies, but does not provide a sufficient condition to reproduce the observed α enhancements of massive galaxies. In the framework of our model, this is possible only by assuming that any residual star formation is truncated for galaxies more massive than 1010.5 M⊙. This results, however, in even shorter star formation time-scales for the most massive galaxies, which translate in total stellar metallicities significantly lower than observed. Our results demonstrate that (I) trends of [α/Fe] ratios cannot be simply converted into relative time-scale indicators; and (II) AGN feedback cannot explain alone the positive correlation between [α/Fe] and galaxy mass/velocity dispersion. Reproducing simultaneously the mass-metallicity relation and the α enhancements observed pose a challenge for hierarchical models, unless more exotic solutions are adopted such as metal-rich winds or a variable initial mass function.

Persistence and memory timescales in root-zone soil moisture dynamics

Treesearch

Khaled Ghannam; Taro Nakai; Athanasios Paschalis; Andrew C. Oishi; Ayumi Kotani; Yasunori Igarashi; Tomo' omi Kumagai; Gabriel G. Katul

2016-01-01

The memory timescale that characterizes root-zone soil moisture remains the dominant measure in seasonal forecasts of land-climate interactions. This memory is a quasi-deterministic timescale associated with the losses (e.g., evapotranspiration) from the soil column and is often interpreted as persistence in soil moisture states. Persistence, however,...

The Arctic Predictability and Prediction on Seasonal-to-Interannual TimEscales (APPOSITE) data set

NASA Astrophysics Data System (ADS)

Day, J. J.; Tietsche, S.; Collins, M.; Goessling, H. F.; Guemas, V.; Guillory, A.; Hurlin, W. J.; Ishii, M.; Keeley, S. P. E.; Matei, D.; Msadek, R.; Sigmond, M.; Tatebe, H.; Hawkins, E.

2015-10-01

Recent decades have seen significant developments in seasonal-to-interannual timescale climate prediction capabilities. However, until recently the potential of such systems to predict Arctic climate had not been assessed. This paper describes a multi-model predictability experiment which was run as part of the Arctic Predictability and Prediction On Seasonal to Inter-annual Timescales (APPOSITE) project. The main goal of APPOSITE was to quantify the timescales on which Arctic climate is predictable. In order to achieve this, a coordinated set of idealised initial-value predictability experiments, with seven general circulation models, was conducted. This was the first model intercomparison project designed to quantify the predictability of Arctic climate on seasonal to inter-annual timescales. Here we present a description of the archived data set (which is available at the British Atmospheric Data Centre) and an update of the project's results. Although designed to address Arctic predictability, this data set could also be used to assess the predictability of other regions and modes of climate variability on these timescales, such as the El Niño Southern Oscillation.

The transition from intermittent to continuous bed-load transport arises from merger of "bursty" transport events

NASA Astrophysics Data System (ADS)

Lee, D. B.; Jerolmack, D. J.

2017-12-01

Bed-load transport is notoriously unpredictable, in part due to stochastic fluctuations in grain entrainment and deposition. A general statistical mechanical framework has been proposed by Furbish and colleagues to formally derive average bed-load flux from grain-scale motion, and its application requires an intimate understanding of the probabilistic motion of individual grains. Recent work by Ancey et al. suggests that, near threshold, particles are entrained collectively. If so, understanding the scales of correlation is a necessary step to complete the probabilistic framework describing bed-load flux. We perform a series of experiments in a steep-sloped channel that directly quantifies fluctuations in grain motion as a function of the feed rate of particles (marbles). As the feed rate is increased, the necessary averaging time is decreased (i.e. transport grows less variable in time). Collective grain motion is defined as spatially clustered movement of several grains at once. We find that entrainment of particles is generally collective, but that these entrained particles deposit independently of each other. The size distribution of collective motion events follows an exponential decay that is consistent across sediment feed rates. To first order, changing feed rate does not change the kinematics of mobile grains, just the frequency of motion. For transport within a given region of the bed, we show that the total displacement of all entrained grains is proportional to the kinetic energy deposited into the bed by impacting grains. Individual grain-bed impacts are the likely cause of both collective and individual grain entrainment. The picture that emerges is similar to generic avalanching dynamics in sandpiles: "avalanches" (collective entrainment events) of a characteristic size relax with a characteristic timescale regardless of feed rate, but the frequency of avalanches increases in proportion to the feed rate. At high enough feed rates the avalanches merge, leading to progressively smoother and continuous transport. As most bed-load transport occurs in the intermittent regime, the length scale of collective entrainment should be considered a fundamental addition to a probabilistic framework that hopes to infer flux from grain motion.

On Geomagnetism and Paleomagnetism

NASA Technical Reports Server (NTRS)

Voorhies, Coerte V.

1998-01-01

A statistical description of Earth's broad scale, core-source magnetic field has been developed and tested. The description features an expected, or mean, spatial magnetic power spectrum that is neither "flat" nor "while" at any depth, but is akin to spectra advanced by Stevenson and McLeod. This multipole spectrum describes the magnetic energy range; it is not steep enough for Gubbins' magnetic dissipation range. Natural variations of core multipole powers about their mean values are to be expected over geologic time and are described via trial probability distribution functions that neither require nor prohibit magnetic isotropy. The description is thus applicable to core-source dipole and low degree non-dipole fields despite axial dipole anisotropy. The description is combined with main field models of modem satellite and surface geomagnetic measurements to make testable predictions of: (1) the radius of Earth's core, (2) mean paleomagnetic field intensity, and (3) the mean rates and durations of both dipole power excursions and durable axial dipole reversals. The predicted core radius is 0.7% above the 3480 km seismologic value. The predicted root mean square paleointensity (35.6 mu T) and mean Virtual Axial Dipole Moment (about 6.2 lx 1022 Am(exp 2)) are within the range of various mean paleointensity estimates. The predicted mean rate of dipole power excursions, as defined by an absolute dipole moment <20% of the 1980 value, is 9.04/Myr and 14% less than obtained by analysis of a 4 Myr paleointensity record. The predicted mean rate of durable axial dipole reversals (2.26/Myr) is 2.3% more than established by the polarity time-scale for the past 84 Myr. The predicted mean duration of axial dipole reversals (5533 yr) is indistinguishable from an observational value. The accuracy of these predictions demonstrates the power and utility of the description, which is thought to merit further development and testing. It is suggested that strong stable stratification of Earth's uppermost outer core leads to a geologically long interval of no dipole reversals and a very nearly axisymmetric field outside the core. Statistical descriptions of other planetary magnetic fields are outlined.

How multi-partner endosymbioses function.

PubMed

Douglas, Angela E

2016-12-01

Various animals are associated with specific endosymbiotic microorganisms that provide the host with essential nutrients or confer protection against natural enemies. Genomic analyses of the many endosymbioses that are found in plant sap-feeding hemipteran insects have revealed independent acquisitions - and occasional replacements - of endosymbionts, such that many of these endosymbioses involve two or more microbial partners. In this Review, I discuss how partitioning of the genetic capacity for metabolic function between different endosymbionts has sustained nutritional function in multi-partner endosymbioses, and how the phenotypic traits of these endosymbionts can be shaped by co-evolutionary interactions with both co-occurring microbial taxa and the host, which often operate over long evolutionary timescales.

Contour Planting: A Strategy to Reduce Soil Erosion on Steep Slopes

USDA-ARS?s Scientific Manuscript database

Practices that combine GPS-based guidance for terrain contouring and tillage for runoff detention have potential to increase water infiltration and reduce runoff. The objective of this study was to investigate contour planting as a means to reduce soil erosion on steep slopes of the Columbia Platea...

Light sheet microscopy reveals more gradual light attenuation in light green versus dark green soybean leaves

USDA-ARS?s Scientific Manuscript database

Light wavelengths preferentially absorbed by chlorophyll (chl) often display steep absorption gradients. This oversaturates photosynthesis in upper chloroplasts and deprives lower chloroplasts of blue and red light, causing a steep gradient in carbon fixation. Reducing chl content could create a mor...

Dynamic correlations at different time-scales with empirical mode decomposition

NASA Astrophysics Data System (ADS)

Nava, Noemi; Di Matteo, T.; Aste, Tomaso

2018-07-01

We introduce a simple approach which combines Empirical Mode Decomposition (EMD) and Pearson's cross-correlations over rolling windows to quantify dynamic dependency at different time scales. The EMD is a tool to separate time series into implicit components which oscillate at different time-scales. We apply this decomposition to intraday time series of the following three financial indices: the S&P 500 (USA), the IPC (Mexico) and the VIX (volatility index USA), obtaining time-varying multidimensional cross-correlations at different time-scales. The correlations computed over a rolling window are compared across the three indices, across the components at different time-scales and across different time lags. We uncover a rich heterogeneity of interactions, which depends on the time-scale and has important lead-lag relations that could have practical use for portfolio management, risk estimation and investment decisions.

The sensitivity of the atmospheric branch of the global water cycle to temperature fluctuations at synoptic to decadal time-scales in different satellite- and model-based products

NASA Astrophysics Data System (ADS)

Nogueira, Miguel

2018-02-01

Spectral analysis of global-mean precipitation, P, evaporation, E, precipitable water, W, and surface temperature, Ts, revealed significant variability from sub-daily to multi-decadal time-scales, superposed on high-amplitude diurnal and yearly peaks. Two distinct regimes emerged from a transition in the spectral exponents, β. The weather regime covering time-scales < 10 days with β ≥ 1; and the macroweather regime extending from a few months to a few decades with 0 <β <1. Additionally, the spectra showed a generally good statistical agreement amongst several different model- and satellite-based datasets. Detrended cross-correlation analysis (DCCA) revealed three important results which are robust across all datasets: (1) Clausius-Clapeyron (C-C) relationship is the dominant mechanism of W non-periodic variability at multi-year time-scales; (2) C-C is not the dominant control of W, P or E non-periodic variability at time-scales below about 6 months, where the weather regime is approached and other mechanisms become important; (3) C-C is not a dominant control for P or E over land throughout the entire time-scale range considered. Furthermore, it is suggested that the atmosphere and oceans start to act as a single coupled system at time-scales > 1-2 years, while at time-scales < 6 months they are not the dominant drivers of each other. For global-ocean and full-globe averages, ρDCCA showed large spread of the C-C importance for P and E variability amongst different datasets at multi-year time-scales, ranging from negligible (< 0.3) to high ( 0.6-0.8) values. Hence, state-of-the-art climate datasets have significant uncertainties in the representation of macroweather precipitation and evaporation variability and its governing mechanisms.

A statistical forecast model using the time-scale decomposition technique to predict rainfall during flood period over the middle and lower reaches of the Yangtze River Valley

NASA Astrophysics Data System (ADS)

Hu, Yijia; Zhong, Zhong; Zhu, Yimin; Ha, Yao

2018-04-01

In this paper, a statistical forecast model using the time-scale decomposition method is established to do the seasonal prediction of the rainfall during flood period (FPR) over the middle and lower reaches of the Yangtze River Valley (MLYRV). This method decomposites the rainfall over the MLYRV into three time-scale components, namely, the interannual component with the period less than 8 years, the interdecadal component with the period from 8 to 30 years, and the interdecadal component with the period larger than 30 years. Then, the predictors are selected for the three time-scale components of FPR through the correlation analysis. At last, a statistical forecast model is established using the multiple linear regression technique to predict the three time-scale components of the FPR, respectively. The results show that this forecast model can capture the interannual and interdecadal variation of FPR. The hindcast of FPR during 14 years from 2001 to 2014 shows that the FPR can be predicted successfully in 11 out of the 14 years. This forecast model performs better than the model using traditional scheme without time-scale decomposition. Therefore, the statistical forecast model using the time-scale decomposition technique has good skills and application value in the operational prediction of FPR over the MLYRV.

Time-scale invariance as an emergent property in a perceptron with realistic, noisy neurons

PubMed Central

Buhusi, Catalin V.; Oprisan, Sorinel A.

2013-01-01

In most species, interval timing is time-scale invariant: errors in time estimation scale up linearly with the estimated duration. In mammals, time-scale invariance is ubiquitous over behavioral, lesion, and pharmacological manipulations. For example, dopaminergic drugs induce an immediate, whereas cholinergic drugs induce a gradual, scalar change in timing. Behavioral theories posit that time-scale invariance derives from particular computations, rules, or coding schemes. In contrast, we discuss a simple neural circuit, the perceptron, whose output neurons fire in a clockwise fashion (interval timing) based on the pattern of coincidental activation of its input neurons. We show numerically that time-scale invariance emerges spontaneously in a perceptron with realistic neurons, in the presence of noise. Under the assumption that dopaminergic drugs modulate the firing of input neurons, and that cholinergic drugs modulate the memory representation of the criterion time, we show that a perceptron with realistic neurons reproduces the pharmacological clock and memory patterns, and their time-scale invariance, in the presence of noise. These results suggest that rather than being a signature of higher-order cognitive processes or specific computations related to timing, time-scale invariance may spontaneously emerge in a massively-connected brain from the intrinsic noise of neurons and circuits, thus providing the simplest explanation for the ubiquity of scale invariance of interval timing. PMID:23518297

Morphological Dynamics of Mitochondria – A Special Emphasis on Cardiac Muscle Cells

PubMed Central

Hom, Jennifer; Sheu, Shey-Shing

2010-01-01

Mitochondria play a critical role in cellular energy metabolism, Ca2+ homeostasis, reactive oxygen species generation, apoptosis, aging, and development. Many recent publications have shown that a continuous balance of fusion and fission of these organelles is important in maintaining their proper function. Therefore, there is a steep correlation between the form and function of mitochondria. Many major proteins involved in mitochondrial fusion and fission have been identified in different cell types, including heart. However, the functional role of mitochondrial dynamics in the heart remains, for the most part, unexplored. In this review we will cover the recent field of mitochondrial dynamics and its physiological and pathological implications, with a particular emphasis on the experimental and theoretical basis of mitochondrial dynamics in the heart. PMID:19281816

Eleven years of monitoring the Seyfert 1 Mrk 335 with Swift: Characterizing the X-ray and UV/optical variability

NASA Astrophysics Data System (ADS)

Gallo, L. C.; Blue, D. M.; Grupe, D.; Komossa, S.; Wilkins, D. R.

2018-05-01

The narrow-line Seyfert 1 galaxy (NLS1) Mrk 335 has been continuously monitored with Swift since May 2007 when it fell into a long-lasting, X-ray low-flux interval. Results from the nearly 11 years of monitoring are presented here. Structure functions are used to measure the UV-optical and X-ray power spectra. The X-ray structure function measured between 10 - 100 days is consistent with the flat, low-frequency part of the power spectrum measured previously in Mrk 335. The UV-optical structure functions of Mrk 335 are comparable with those of other Seyfert 1 galaxies and of Mrk 335 itself when it was in a normal bright state. There is no indication that the current X-ray low-flux state is attributed to changes in the accretion disc structure of Mrk 335. The characteristic timescales measured in the structure functions can be attributed to thermal (for the UV) and dynamic (for the optical) timescales in a standard accretion disc. The high-quality UVW2 (˜1800 Å in the source frame) structure function appears to have two breaks and two different slopes between 10 - 160 days. Correlations between the X-ray and other bands are not highly significant when considering the entire 11-year light curves, but more significant behaviour is present when considering segments of the light curves. A correlation between the X-ray and UVW2 in 2014 (Year-8) may be predominately caused by an giant X-ray flare that was interpreted as jet-like emission. In 2008 (Year-2), possible lags between the UVW2 emission and other UV-optical waveband may be consistent with reprocessing of X-ray or UV emission in the accretion disc.

Adaptive microfluidic gradient generator for quantitative chemotaxis experiments.

PubMed

Anielski, Alexander; Pfannes, Eva K B; Beta, Carsten

2017-03-01

Chemotactic motion in a chemical gradient is an essential cellular function that controls many processes in the living world. For a better understanding and more detailed modelling of the underlying mechanisms of chemotaxis, quantitative investigations in controlled environments are needed. We developed a setup that allows us to separately address the dependencies of the chemotactic motion on the average background concentration and on the gradient steepness of the chemoattractant. In particular, both the background concentration and the gradient steepness can be kept constant at the position of the cell while it moves along in the gradient direction. This is achieved by generating a well-defined chemoattractant gradient using flow photolysis. In this approach, the chemoattractant is released by a light-induced reaction from a caged precursor in a microfluidic flow chamber upstream of the cell. The flow photolysis approach is combined with an automated real-time cell tracker that determines changes in the cell position and triggers movement of the microscope stage such that the cell motion is compensated and the cell remains at the same position in the gradient profile. The gradient profile can be either determined experimentally using a caged fluorescent dye or may be alternatively determined by numerical solutions of the corresponding physical model. To demonstrate the function of this adaptive microfluidic gradient generator, we compare the chemotactic motion of Dictyostelium discoideum cells in a static gradient and in a gradient that adapts to the position of the moving cell.

The Dependence of Cloud-SST Feedback on Circulation Regime and Timescale

NASA Astrophysics Data System (ADS)

Middlemas, E.; Clement, A. C.; Medeiros, B.

2017-12-01

Studies suggest cloud radiative feedback amplifies internal variability of Pacific sea surface temperature (SST) on interannual-and-longer timescales, though only a few modeling studies have tested the quantitative importance of this feedback (Bellomo et al. 2014b, Brown et al. 2016, Radel et al. 2016 Burgman et al. 2017). We prescribe clouds from a previous control run in the radiation module in Community Atmospheric Model (CAM5-slab), a method called "cloud-locking". By comparing this run to a control run, in which cloud radiative forcing can feedback on the climate system, we isolate the effect of cloud radiative forcing on SST variability. Cloud-locking prevents clouds from radiatively interacting with atmospheric circulation, water vapor, and SST, while maintaining a similar mean state to the control. On all timescales, cloud radiative forcing's influence on SST variance is modulated by the circulation regime. Cloud radiative forcing amplifies SST variance in subsiding regimes and dampens SST variance in convecting regimes. In this particular model, a tug of war between latent heat flux and cloud radiative forcing determines the variance of SST, and the winner depends on the timescale. On decadal-and-longer timescales, cloud radiative forcing plays a relatively larger role than on interannual-and-shorter timescales, while latent heat flux plays a smaller role. On longer timescales, the absence of cloud radiative feedback changes SST variance in a zonally asymmetric pattern in the Pacific Ocean that resembles an IPO-like pattern. We also present an analysis of cloud feedback's role on Pacific SST variability among preindustrial control CMIP5 models to test the model robustness of our results. Our results suggest that circulation plays a crucial role in cloud-SST feedbacks across the globe and cloud radiative feedbacks cannot be ignored when studying SST variability on decadal-and-longer timescales.

Wavelet-based variability of Yellow River discharge at 500-, 100-, and 50-year timescales

NASA Astrophysics Data System (ADS)

Su, Lu; Miao, Chiyuan; Duan, Qingyun

2017-04-01

Water scarcity in the Yellow River, China, has become increasingly severe over the past half century. In this paper, wavelet transform analysis was used to detect the variability of observed and reconstructed streamflow in the Yellow River at 500-, 100-, and 50-year timescales. The periodicity of the streamflow series and the co-varying relationships between streamflow and atmospheric circulation indices / sunspot number were assessed via the continuous wavelet transform (CWT) and the wavelet coherence transform (WTC). The CWT results showed intermittent oscillations in streamflow with increasing periodicities of 1-6 years at all timescales. Significant multidecadal and century-scale periodicities were identified in the 500-year streamflow series. The WTC results showed intermittent interannual covariance of streamflow with atmospheric circulation indices and sunspots. At the 50-year timescale, there were significant decadal oscillations between streamflow and the Arctic Oscillation (AO) and the Pacific Decadal Oscillation (PDO), and bidecadal oscillations with the PDO. At the 100-year timescale, there were significant decadal oscillations between streamflow and Niño 3.4, the AO, and sunspots. At the 500-year timescale, streamflow in the middle reaches of the Yellow River showed prominent covariance with the AO with an approximately 32-year periodicity, and with sunspots with an approximately 80-year periodicity. Atmospheric circulation indices modulate streamflow by affecting temperature and precipitation. Sunspots impact streamflow variability by influencing atmospheric circulation, resulting in abundant precipitation. In general, for both the CWT and the WTC results, the periodicities were spatially continuous, with a few gradual changes from upstream to downstream resulting from the varied topography and runoff. At the temporal scale, the periodicities were generally continuous over short timescales and discontinuous over longer timescales.

Wavelet-based Variability of Yellow River Discharge at 500-, 100-, and 50-Year Timescales

NASA Astrophysics Data System (ADS)

Su, L.

2017-12-01

Water scarcity in the Yellow River, China, has become increasingly severe over the past half century. In this paper, wavelet transform analysis was used to detect the variability of natural, observed, and reconstructed streamflow in the Yellow River at 500-, 100-, and 50-year timescales. The periodicity of the streamflow series and the co-varying relationships between streamflow and atmospheric circulation indices/sunspot number were assessed by means of continuous wavelet transform (CWT) and wavelet transform coherence (WTC) analyses. The CWT results showed intermittent oscillations in streamflow with increasing periodicities of 1-6 years at all timescales. Significant multidecadal and century-scale periodicities were identified in the 500-year streamflow series. The WTC results showed intermittent interannual covariance of streamflow with atmospheric circulation indices and sunspots. At the 50-year timescale, there were significant decadal oscillations between streamflow and the Arctic Oscillation (AO) and the Pacific Decadal Oscillation (PDO), and bidecadal oscillations with the PDO. At the 100-year timescale, there were significant decadal oscillations between streamflow and Niño 3.4, the AO, and sunspots. At the 500-year timescale, streamflow in the middle reaches of the Yellow River showed prominent covariance with the AO with an approximately 32-year periodicity, and with sunspots with an approximately 80-year periodicity. Atmospheric circulation indices modulate streamflow by affecting temperature and precipitation. Sunspots impact streamflow variability by influencing atmospheric circulation, resulting in abundant precipitation. In general, for both the CWT and the WTC results, the periodicities were spatially continuous, with a few gradual changes from upstream to downstream resulting from the varied topography and runoff. At the temporal scale, the periodicities were generally continuous over short timescales and discontinuous over longer timescales.

Computer-based tools for assessing micro-longitudinal patterns of cognitive function in older adults.

PubMed

Brown, Laura J E; Adlam, Tim; Hwang, Faustina; Khadra, Hassan; Maclean, Linda M; Rudd, Bridey; Smith, Tom; Timon, Claire; Williams, Elizabeth A; Astell, Arlene J

2016-08-01

Patterns of cognitive change over micro-longitudinal timescales (i.e., ranging from hours to days) are associated with a wide range of age-related health and functional outcomes. However, practical issues of conducting high-frequency assessments make investigations of micro-longitudinal cognition costly and burdensome to run. One way of addressing this is to develop cognitive assessments that can be performed by older adults, in their own homes, without a researcher being present. Here, we address the question of whether reliable and valid cognitive data can be collected over micro-longitudinal timescales using unsupervised cognitive tests.In study 1, 48 older adults completed two touchscreen cognitive tests, on three occasions, in controlled conditions, alongside a battery of standard tests of cognitive functions. In study 2, 40 older adults completed the same two computerized tasks on multiple occasions, over three separate week-long periods, in their own homes, without a researcher present. Here, the tasks were incorporated into a wider touchscreen system (Novel Assessment of Nutrition and Ageing (NANA)) developed to assess multiple domains of health and behavior. Standard tests of cognitive function were also administered prior to participants using the NANA system.Performance on the two "NANA" cognitive tasks showed convergent validity with, and similar levels of reliability to, the standard cognitive battery in both studies. Completion and accuracy rates were also very high. These results show that reliable and valid cognitive data can be collected from older adults using unsupervised computerized tests, thus affording new opportunities for the investigation of cognitive.

The forest ecosystem of southeast Alaska: 5. Soil mass movement.

Treesearch

Douglas N. Swanston

1974-01-01

Research in southeast Alaska has identified soil mass movement as the dominant erosion process, with debris avalanches and debris flows the most frequent events on characteristically steep, forested slopes. Periodically high soil water levels and steep slopes are controlling factors. Bedrock structure and the rooting characteristics of trees and other vegetation exert...

Does WEPP meet the specificity of soil erosion in steep mountain regions?

USDA-ARS?s Scientific Manuscript database

We chose the USDA-ARS-WEPP model (Water Erosion Prediction Project) to describe the soil erosion in the Urseren valley (Central Switzerland) as it seems to be one of the most promising models for steep mountain environments. Crucial model parameters were determined in the field (slope, plant species...

It's time to look at yarding problems on steep slopes.

Treesearch

Robert H. Ruth

1960-01-01

In many parts of the Pacific Northwest, logging operations are moving into rugged terrain as access roads probe deeper into the back country. Because of this trend, it's time to look more carefully at steep slopes and decide on the best possible management practices consistent with maximum protection against erosion.

Riparian hydraulic gradient and stream-groundwater exchange dynamics in steep headwater valleys

Treesearch

T.J. Voltz; M.N. Gooseff; A.S. Ward; K. Singha; M. Fitzgerald; T. Wagener

2013-01-01

Patterns of riparian hydraulic gradients and stream-groundwater exchange in headwater catchments provide the hydrologic context for important ecological processes. Although the controls are relatively well understood, their dynamics during periods of hydrologic change is not. We investigate riparian hydraulic gradients over three different time scales in two steep,...

Slope, Rate of Change, and Steepness: Do Students Understand These Concepts?

ERIC Educational Resources Information Center

Teuscher, Dawn; Reys, Robert E.

2010-01-01

How do mathematics teachers introduce the concepts of slope, rate of change, and steepness in their classrooms? Do students understand these concepts as interchangeable or regard them as three different ideas? In this article, the authors report the results of a study of high school Advanced Placement (AP) Calculus students who displayed…

The Use of Ultrashort Picosecond Laser Pulses to Generate Quantum Optical Properties of Single Molecules in Biophysics

NASA Astrophysics Data System (ADS)

Ly, Sonny

Generation of quantum optical states from ultrashort laser-molecule interactions have led to fascinating discoveries in physics and chemistry. In recent years, these interactions have been extended to probe phenomena in single molecule biophysics. Photons emitted from a single fluorescent molecule contains important properties about how the molecule behave and function in that particular environment. Analysis of the second order coherence function through fluorescence correlation spectroscopy plays a pivotal role in quantum optics. At very short nanosecond timescales, the coherence function predicts photon antibunching, a purely quantum optical phenomena which states that a single molecule can only emit one photon at a time. Photon antibunching is the only direct proof of single molecule emission. From the nanosecond to microsecond timescale, the coherence function gives information about rotational diffusion coefficients, and at longer millisecond timescales, gives information regarding the translational diffusion coefficients. In addition, energy transfer between molecules from dipole-dipole interaction results in FRET, a highly sensitive method to probe conformational dynamics at nanometer distances. Here I apply the quantum optical techniques of photon antibunching, fluorescence correlation spectroscopy and FRET to probe how lipid nanodiscs form and function at the single molecule level. Lipid nanodiscs are particles that contain two apolipoprotein (apo) A-I circumventing a lipid bilayer in a belt conformation. From a technological point of view, nanodiscs mimics a patch of cell membrane that have recently been used to reconstitute a variety of membrane proteins including cytochrome P450 and bacteriorhodopsin. They are also potential drug transport vehicles due to its small and stable 10nm diameter size. Biologically, nanodiscs resemble to high degree, high density lipoproteins (HDL) in our body and provides a model platform to study lipid-protein interactions and their dynamic formation to lipoprotein particles without having to extract from human blood plasma. Although HDL has been studied extensively within the last thirty years, many questions still remain regarding the structure of apoA-I, the protein associated exclusively with it. Despite our ability to detect and image these nanodiscs by blotting, atomic force microscopy (AFM), or electron microscopy (EM), many basic properties such as their specific hydrated shape in solution, or the precise conformation of the apolipoproteins surrounding the particles are still unknown. The dynamic interactions of apoA-I with lipids are also rather poorly understood on a fundamental level, and are only characterized in bulk (biochemical blotting) or stationary methods (AFM, EM), making it impossible to study individual steps with high spatial or temporal resolution.

[Use of flour from sunflower oil cake in the biosynthesis of antigungal antibiotics].

PubMed

Sukharevich, V M; Shvetsova, N N; Prodan, S I; Malkov, M A

1977-04-01

The possibility of replacing soybean meal and corn-steep liquor by food wastes of the oilpress industry and the meal of the sunflower oil cake in particular is discussed as applied to the fermentation media for production of antifungal antibiotics, such as levorin, mycoheptin, amphotericin. The studies showed that replacement of soybean meal by sunflower oil cake meal with simultaneous increasing of the amount of carbohydrates in the medium increased the levorin levels by 60--70 per cent as compared to the media used at present. When soybean meal and corn-steep liquor were simultaneously replaced by sunflower oil cake meal in amounts of 3--4 per cent the levels of mycoheptin in the fermentation broth increased by 30--65 per cent respectively. Replacement of soybean meal and corn-steep liquor by 3 per cent of sunflow oil cake meal in the medium used presently increased the amphotericin levels by 27 percent as compared to the control. Therefore, sunflower oil cake meal is a substitute of full value for soybean meal and corn-steep liquor in the fermentation media for production of antifungal antibiotics.

The timescales of global surface-ocean connectivity.

PubMed

Jönsson, Bror F; Watson, James R

2016-04-19

Planktonic communities are shaped through a balance of local evolutionary adaptation and ecological succession driven in large part by migration. The timescales over which these processes operate are still largely unresolved. Here we use Lagrangian particle tracking and network theory to quantify the timescale over which surface currents connect different regions of the global ocean. We find that the fastest path between two patches--each randomly located anywhere in the surface ocean--is, on average, less than a decade. These results suggest that marine planktonic communities may keep pace with climate change--increasing temperatures, ocean acidification and changes in stratification over decadal timescales--through the advection of resilient types.

Engineering dynamical control of cell fate switching using synthetic phospho-regulons

PubMed Central

Gordley, Russell M.; Williams, Reid E.; Bashor, Caleb J.; Toettcher, Jared E.; Yan, Shude; Lim, Wendell A.

2016-01-01

Many cells can sense and respond to time-varying stimuli, selectively triggering changes in cell fate only in response to inputs of a particular duration or frequency. A common motif in dynamically controlled cells is a dual-timescale regulatory network: although long-term fate decisions are ultimately controlled by a slow-timescale switch (e.g., gene expression), input signals are first processed by a fast-timescale signaling layer, which is hypothesized to filter what dynamic information is efficiently relayed downstream. Directly testing the design principles of how dual-timescale circuits control dynamic sensing, however, has been challenging, because most synthetic biology methods have focused solely on rewiring transcriptional circuits, which operate at a single slow timescale. Here, we report the development of a modular approach for flexibly engineering phosphorylation circuits using designed phospho-regulon motifs. By then linking rapid phospho-feedback with slower downstream transcription-based bistable switches, we can construct synthetic dual-timescale circuits in yeast in which the triggering dynamics and the end-state properties of the ON state can be selectively tuned. These phospho-regulon tools thus open up the possibility to engineer cells with customized dynamical control. PMID:27821768

Examining the Interplay of Processes Across Multiple Time-Scales: Illustration With the Intraindividual Study of Affect, Health, and Interpersonal Behavior (iSAHIB).

PubMed

Ram, Nilam; Conroy, David E; Pincus, Aaron L; Lorek, Amy; Rebar, Amanda; Roche, Michael J; Coccia, Michael; Morack, Jennifer; Feldman, Josh; Gerstorf, Denis

Human development is characterized by the complex interplay of processes that manifest at multiple levels of analysis and time-scales. We introduce the Intraindividual Study of Affect, Health and Interpersonal Behavior (iSAHIB) as a model for how multiple time-scale study designs facilitate more precise articulation of developmental theory. Combining age heterogeneity, longitudinal panel, daily diary, and experience sampling protocols, the study made use of smartphone and web-based technologies to obtain intensive longitudinal data from 150 persons age 18-89 years as they completed three 21-day measurement bursts ( t = 426 bursts, t = 8,557 days) wherein they provided reports on their social interactions ( t = 64,112) as they went about their daily lives. We illustrate how multiple time-scales of data can be used to articulate bioecological models of development and the interplay among more 'distal' processes that manifest at 'slower' time-scales (e.g., age-related differences and burst-to-burst changes in mental health) and more 'proximal' processes that manifest at 'faster' time-scales (e.g., changes in context that progress in accordance with the weekly calendar and family influence processes).

The contribution of local and transport processes to phytoplankton biomass variability over different timescales in the Upper James River, Virginia

NASA Astrophysics Data System (ADS)

Qin, Qubin; Shen, Jian

2017-09-01

Although both local processes (photosynthesis, respiration, grazing, and settling), and transport processes (advective transport and diffusive transport) significantly affect local phytoplankton dynamics, it is difficult to separate their contributions and to investigate the relative importance of each process to the local variability of phytoplankton biomass over different timescales. A method of using the transport rate is introduced to quantify the contribution of transport processes. By combining the time-varying transport rate and high-frequency observed chlorophyll a data, we can explicitly examine the impact of local and transport processes on phytoplankton biomass over a range of timescales from hourly to annually. For the Upper James River, results show that the relative importance of local and transport processes differs on different timescales. Local processes dominate phytoplankton variability on daily to weekly timescales, whereas the contribution of transport processes increases on seasonal to annual timescales and reaches equilibrium with local processes. With the use of the transport rate and high-frequency chlorophyll a data, a method similar to the open water oxygen method for metabolism is also presented to estimate phytoplankton primary production.

Influence of Terraced area DEM Resolution on RUSLE LS Factor

NASA Astrophysics Data System (ADS)

Zhang, Hongming; Baartman, Jantiene E. M.; Yang, Xiaomei; Gai, Lingtong; Geissen, Viollette

2017-04-01

Topography has a large impact on the erosion of soil by water. Slope steepness and slope length are combined (the LS factor) in the universal soil-loss equation (USLE) and its revised version (RUSLE) for predicting soil erosion. The LS factor is usually extracted from a digital elevation model (DEM). The grid size of the DEM will thus influence the LS factor and the subsequent calculation of soil loss. Terracing is considered as a support practice factor (P) in the USLE/RUSLE equations, which is multiplied with the other USLE/RUSLE factors. However, as terraces change the slope length and steepness, they also affect the LS factor. The effect of DEM grid size on the LS factor has not been investigated for a terraced area. We obtained a high-resolution DEM by unmanned aerial vehicles (UAVs) photogrammetry, from which the slope steepness, slope length, and LS factor were extracted. The changes in these parameters at various DEM resolutions were then analysed. The DEM produced detailed LS-factor maps, particularly for low LS factors. High (small valleys, gullies, and terrace ridges) and low (flats and terrace fields) spatial frequencies were both sensitive to changes in resolution, so the areas of higher and lower slope steepness both decreased with increasing grid size. Average slope steepness decreased and average slope length increased with grid size. Slope length, however, had a larger effect than slope steepness on the LS factor as the grid size varied. The LS factor increased when the grid size increased from 0.5 to 30-m and increased significantly at grid sizes >5-m. The LS factor was increasingly overestimated as grid size decreased. The LS factor decreased from grid sizes of 30 to 100-m, because the details of the terraced terrain were gradually lost, but the factor was still overestimated.

Egalitarian despots: hierarchy steepness, reciprocity and the grooming-trade model in wild chimpanzees, Pan troglodytes.

PubMed

Kaburu, Stefano S K; Newton-Fisher, Nicholas E

2015-01-01

Biological market theory models the action of natural selection as a marketplace in which animals are viewed as traders with commodities to offer and exchange. Studies of female Old World monkeys have suggested that grooming might be employed as a commodity to be reciprocated or traded for alternative services, yet previous tests of this grooming-trade model in wild adult male chimpanzees have yielded mixed results. Here we provide the strongest test of the model to date for male chimpanzees: we use data drawn from two social groups (communities) of chimpanzees from different populations and give explicit consideration to variation in dominance hierarchy steepness, as such variation results in differing conditions for biological markets. First, analysis of data from published accounts of other chimpanzee communities, together with our own data, showed that hierarchy steepness varied considerably within and across communities and that the number of adult males in a community aged 20-30 years predicted hierarchy steepness. The two communities in which we tested predictions of the grooming-trade model lay at opposite extremes of this distribution. Second, in accord with the grooming-trade model, we found evidence that male chimpanzees trade grooming for agonistic support where hierarchies are steep (despotic) and consequent effective support is a rank-related commodity, but not where hierarchies are shallow (egalitarian). However, we also found that grooming was reciprocated regardless of hierarchy steepness. Our findings also hint at the possibility of agonistic competition, or at least exclusion, in relation to grooming opportunities compromising the free market envisioned by biological market theory. Our results build on previous findings across chimpanzee communities to emphasize the importance of reciprocal grooming exchanges among adult male chimpanzees, which can be understood in a biological markets framework if grooming by or with particular individuals is a valuable commodity.

Egalitarian despots: hierarchy steepness, reciprocity and the grooming-trade model in wild chimpanzees, Pan troglodytes

PubMed Central

Kaburu, Stefano S. K.; Newton-Fisher, Nicholas E.

2014-01-01

Biological market theory models the action of natural selection as a marketplace in which animals are viewed as traders with commodities to offer and exchange. Studies of female Old World monkeys have suggested that grooming might be employed as a commodity to be reciprocated or traded for alternative services, yet previous tests of this grooming-trade model in wild adult male chimpanzees have yielded mixed results. Here we provide the strongest test of the model to date for male chimpanzees: we use data drawn from two social groups (communities) of chimpanzees from different populations and give explicit consideration to variation in dominance hierarchy steepness, as such variation results in differing conditions for biological markets. First, analysis of data from published accounts of other chimpanzee communities, together with our own data, showed that hierarchy steepness varied considerably within and across communities and that the number of adult males in a community aged 20–30 years predicted hierarchy steepness. The two communities in which we tested predictions of the grooming-trade model lay at opposite extremes of this distribution. Second, in accord with the grooming-trade model, we found evidence that male chimpanzees trade grooming for agonistic support where hierarchies are steep (despotic) and consequent effective support is a rank-related commodity, but not where hierarchies are shallow (egalitarian). However, we also found that grooming was reciprocated regardless of hierarchy steepness. Our findings also hint at the possibility of agonistic competition, or at least exclusion, in relation to grooming opportunities compromising the free market envisioned by biological market theory. Our results build on previous findings across chimpanzee communities to emphasize the importance of reciprocal grooming exchanges among adult male chimpanzees, which can be understood in a biological markets framework if grooming by or with particular individuals is a valuable commodity. PMID:25580017

Effect of corn bran and steep inclusion in finishing diets on diet digestibility, cattle performance, and nutrient mass balance.

PubMed

Sayer, K M; Buckner, C D; Erickson, G E; Klopfenstein, T J; Macken, C N; Loy, T W

2013-08-01

One metabolism trial and 2 finishing trials were conducted to evaluate the effects of adding corn bran and steep liquor (steep) in replacement of dry-rolled corn (DRC) on diet digestibility, cattle performance, and nutrient mass balance in open feedlot pens. The metabolism trial (Exp. 1) used 8 ruminally cannulated heifers in a 4 × 4 Latin square design and the 2 finishing trials used 128 steer calves fed for 167 d (Exp. 2) and 256 yearling steers fed for 126 d (Exp. 3). Dietary treatments for all trials included a DRC-based control (CON), 30% corn bran (30/0), 30% corn bran plus 15% steep (30/15), and 45% corn bran plus 15% steep (45/15), in which by-products replaced DRC and molasses in the diet (DM basis). Diets were not isonitrogenous or isoenergetic. In the metabolism trial, feeding the by-product diets produced greater rumen pH (5.95) than CON (5.76; P < 0.01). Total tract DM and OM digestibility were greater for heifers fed CON than the by-product diets (P < 0.01). Dry matter and NDF ruminal disappearance (%/h) of corn bran were numerically less for cattle fed the CON diet than the by-product diets (2.36 vs. 2.84 and 0.72 vs. 1.66, respectively). In the performance trials, steers fed the by-product diets consumed more DM (P = 0.06) and G:F was either similar for all diets in Exp. 2 (P = 0.56) or less for cattle fed 30/0 than the other diets in Exp. 3 (P = 0.05). Percent N loss was reduced in Exp. 2 by including corn bran in diets compared with CON (P < 0.01). However, in Exp. 3, no differences in percent N loss were detected among treatments (P = 0.16), but more N was removed in the manure from pens where steers were fed by-products (P = 0.01). Although steep did not improve diet digestibility, it was beneficial in maintaining cattle performance in the feedlot studies. Feeding corn bran in combination with steep increased manure N removed and N in compost, but decreased percent N lost during the winter months only.

Effects of Sediment Patches on Sediment Transport Predictions in Steep Mountain Channels

NASA Astrophysics Data System (ADS)

Monsalve Sepulveda, A.; Yager, E.

2013-12-01

Bed surface patches occur in most gravel-bedded rivers and in steep streams can be divided between relatively immobile boulders and more mobile patches of cobbles and gravel. This spatial variability in grain size, roughness and sorting impact bed load transport by altering the relative local mobility of different grain sizes and creating complex local flow fields. Large boulders also bear a significant part of the total shear stress and we hypothesize that the remaining shear stress on a given mobile patch is a distribution of values that depend on the local topography, patch type and location relative to the large roughness elements and thalweg. Current sediment transport equations do not account for the variation in roughness, local flow and grain size distributions on and between patches and often use an area-weighted approach to obtain a representative grain size distribution and reach-averaged shear stress. Such equations also do not distinguish between active (patches where at least one grain size is in motion) and inactive patches or include the difference in mobility between patch classes as result of spatial shear stress distributions. To understand the effects of sediment patches on sediment transport in steep channels, we calculated the shear stress distributions over a range of patch classes in a 10% gradient step-pool stream. We surveyed the bed with a high density resolution (every 5 cm in horizontal and vertical directions over a 40 m long reach) using a total station and terrestrial LiDAR, mapped and classified patches by their grain size distributions, and measured water surface elevations and mean velocities for low to moderate flow events. Using these data we calibrated a quasi-three dimensional model (FaSTMECH) to obtain shear stress distributions over each patch for a range of flow discharges. We modified Parker's (1990) equations to use the calculated shear stress distribution, measured grain sizes, and a specific hiding function for each patch class, and then added the bedload fluxes for each patch to calculate the reach-averaged sediment transport rate. Sediment mobility in patches was highly dependent on the patch's class and location relative to the thalweg and large roughness elements. Compared to deterministic formulations, the use of distributions of shear stress improved predictions of bedload transport in steep mountain channels.

Are grain packing and flow turbulence the keys to predicting bedload transport in steep streams? (Invited)

NASA Astrophysics Data System (ADS)

Yager, E.; Monsalve Sepulveda, A.; Smith, H. J.; Badoux, A.

2013-12-01

Bedload transport rates in steep mountain channels are often over-predicted by orders of magnitude, which has been attributed to a range of processes from grain jamming, roughness drag, changes in fluid turbulence and a limited upstream sediment supply. We hypothesize that such poor predictions occur in part because the grain-scale mechanics (turbulence, particle arrangements) of sediment transport are not well understood or incorporated into simplified reach-averaged calculations. To better quantify how turbulence impacts sediment movement, we measured detailed flow velocities and forces at the onset of motion of a single test grain with a fixed pocket geometry in laboratory flume experiments. Of all measured parameters (e.g. flow velocity, shear stress), the local fluid drag force had the highest statistical correlation with grain motion. Use of flow velocity or shear stress to estimate sediment transport may therefore result in erroneous predictions given their relatively low correlation to the onset of sediment motion. To further understand the role of grain arrangement on bedload transport, we measured in situ grain resisting forces to motion (using a force sensor) for a range of grain sizes and patch classes in the Erlenbach torrent, Switzerland (10% gradient). Such forces varied by over two orders of magnitude for a given grain weight and were statistically greater than those calculated using empirical equations for the friction angle. In addition, when normalized by the grain weight, the resisting forces declined with higher grain protrusion above the surrounding bed sediment. Therefore, resisting forces from grain packing and interlocking are substantial and depend on the amount of grain burial. The onset of motion may be considerably under-estimated when calculated solely from measured grain sizes and friction angles. These packing forces may partly explain why critical Shields stresses are higher in steep channels. Such flow and grain parameters also spatially vary in steep streams because of boulder steps and patches of different grain size distributions. To determine if this spatial variation is important for bedload transport, we incorporated probability density functions of flow turbulence and patch grain size distributions into a simple bedload transport equation. Predicted bedload fluxes were significantly improved when distributions of these parameters, rather than single reach-averaged values, were used.

Ultrafast and slow charge recombination dynamics of diketopyrrolopyrrole-NiO dye sensitized solar cells.

PubMed

Zhang, Lei; Favereau, Ludovic; Farré, Yoann; Mijangos, Edgar; Pellegrin, Yann; Blart, Errol; Odobel, Fabrice; Hammarström, Leif

2016-07-21

In a photophysical study, two diketopyrrolopyrrole (DPP)-based sensitizers functionalized with 4-thiophenecarboxylic acid as an anchoring group and a bromo (DPPBr) or dicyanovinyl (DPPCN2) group, and a dyad consisting of a DPP unit linked to a naphthalenediimide group (DPP-NDI), were investigated both in solution and grafted on mesoporous NiO films. Femtosecond transient absorption measurements indicate that ultrafast hole injection occurred predominantly on a timescale of ∼200 fs, whereas the subsequent charge recombination occurred on a surprisingly wide range of timescales, from tens of ps to tens of μs; this kinetic heterogeneity is much greater than is typically observed for dye-sensitized TiO2 or ZnO. Also, in contrast to what is typically observed for dye-sensitized TiO2, there was no significant dependence on the excitation power of the recombination kinetics, which can be explained by the hole density being comparatively higher near the valence band of NiO before excitation. The additional acceptor group in DPP-NDI provided a rapid electron shift and stabilized charge separation up to the μs timescale. This enabled efficient (∼95%) regeneration of NDI by a Co(III)(dtb)3 electrolyte (dtb = 4,4'-di-tert-butyl-2,2'-bipyridine), according to transient absorption measurements. The regeneration of DPPBr and DPPCN2 by Co(III)(dtb)3 was instead inefficient, as most recombination for these dyes occurred on the sub-ns timescale. The transient spectroscopy data thus corroborated the trend of the published photovoltaic properties of dye-sensitized solar cells (DSSCs) based on these dyes on mesoporous NiO, and show the potential of a design strategy with a secondary acceptor bound to the dye. The study identifies rapid initial recombination between the dye and NiO as the main obstacle to obtaining high efficiencies in NiO-based DSSCs; these recombination components may be overlooked when studies are conducted using only methods with ns resolution or slower.

Multi-timescale data assimilation for atmosphere–ocean state estimates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Steiger, Nathan; Hakim, Gregory

2016-06-24

Paleoclimate proxy data span seasonal to millennial timescales, and Earth's climate system has both high- and low-frequency components. Yet it is currently unclear how best to incorporate multiple timescales of proxy data into a single reconstruction framework and to also capture both high- and low-frequency components of reconstructed variables. Here we present a data assimilation approach that can explicitly incorporate proxy data at arbitrary timescales. The principal advantage of using such an approach is that it allows much more proxy data to inform a climate reconstruction, though there can be additional benefits. Through a series of offline data-assimilation-based pseudoproxy experiments,more » we find that atmosphere–ocean states are most skillfully reconstructed by incorporating proxies across multiple timescales compared to using proxies at short (annual) or long (~ decadal) timescales alone. Additionally, reconstructions that incorporate long-timescale pseudoproxies improve the low-frequency components of the reconstructions relative to using only high-resolution pseudoproxies. We argue that this is because time averaging high-resolution observations improves their covariance relationship with the slowly varying components of the coupled-climate system, which the data assimilation algorithm can exploit. These results are consistent across the climate models considered, despite the model variables having very different spectral characteristics. Furthermore, our results also suggest that it may be possible to reconstruct features of the oceanic meridional overturning circulation based on atmospheric surface temperature proxies, though here we find such reconstructions lack spectral power over a broad range of frequencies.« less

A method to identify aperiodic disturbances in the ionosphere

NASA Astrophysics Data System (ADS)

Wang, J.-S.; Chen, Z.; Huang, C.-M.

2014-05-01

In this paper, variations in the ionospheric F2 layer's critical frequency are decomposed into their periodic and aperiodic components. The latter include disturbances caused both by geophysical impacts on the ionosphere and random noise. The spectral whitening method (SWM), a signal-processing technique used in statistical estimation and/or detection, was used to identify aperiodic components in the ionosphere. The whitening algorithm adopted herein is used to divide the Fourier transform of the observed data series by a real envelope function. As a result, periodic components are suppressed and aperiodic components emerge as the dominant contributors. Application to a synthetic data set based on significant simulated periodic features of ionospheric observations containing artificial (and, hence, controllable) disturbances was used to validate the SWM for identification of aperiodic components. Although the random noise was somewhat enhanced by post-processing, the artificial disturbances could still be clearly identified. The SWM was then applied to real ionospheric observations. It was found to be more sensitive than the often-used monthly median method to identify geomagnetic effects. In addition, disturbances detected by the SWM were characterized by a Gaussian-type probability density function over all timescales, which further simplifies statistical analysis and suggests that the disturbances thus identified can be compared regardless of timescale.

Cosmological Evolution of Massive Black Holes: Effects of Eddington Ratio Distribution and Quasar Lifetime

NASA Astrophysics Data System (ADS)

Cao, Xinwu

2010-12-01

A power-law time-dependent light curve for active galactic nuclei (AGNs) is expected by the self-regulated black hole growth scenario, in which the feedback of AGNs expels gas and shut down accretion. This is also supported by the observed power-law Eddington ratio distribution of AGNs. At high redshifts, the AGN life timescale is comparable with (or even shorter than) the age of the universe, which sets a constraint on the minimal Eddington ratio for AGNs on the assumption of a power-law AGN light curve. The black hole mass function (BHMF) of AGN relics is calculated by integrating the continuity equation of massive black hole number density on the assumption of the growth of massive black holes being dominated by mass accretion with a power-law Eddington ratio distribution for AGNs. The derived BHMF of AGN relics at z = 0 can fit the measured local mass function of the massive black holes in galaxies quite well, provided the radiative efficiency ~0.1 and a suitable power-law index for the Eddington ratio distribution are adopted. In our calculations of the black hole evolution, the duty cycle of AGN should be less than unity, which requires the quasar life timescale τQ >~ 5 × 108 years.

Comment on "Scaling regimes and linear/nonlinear responses of last millennium climate to volcanic and solar forcing" by S. Lovejoy and C. Varotsos (2016)

NASA Astrophysics Data System (ADS)

Rypdal, Kristoffer; Rypdal, Martin

2016-07-01

Lovejoy and Varotsos (2016) (L&V) analyse the temperature response to solar, volcanic, and solar plus volcanic forcing in the Zebiak-Cane (ZC) model, and to solar and solar plus volcanic forcing in the Goddard Institute for Space Studies (GISS) E2-R model. By using a simple wavelet filtering technique they conclude that the responses in the ZC model combine subadditively on timescales from 50 to 1000 years. Nonlinear response on shorter timescales is claimed by analysis of intermittencies in the forcing and the temperature signal for both models. The analysis of additivity in the ZC model suffers from a confusing presentation of results based on an invalid approximation, and from ignoring the effect of internal variability. We present tests without this approximation which are not able to detect nonlinearity in the response, even without accounting for internal variability. We also demonstrate that internal variability will appear as subadditivity if it is not accounted for. L&V's analysis of intermittencies is based on a mathematical result stating that the intermittencies of forcing and response are the same if the response is linear. We argue that there are at least three different factors that may invalidate the application of this result for these data. It is valid only for a power-law response function; it assumes power-law scaling of structure functions of forcing as well as temperature signal; and the internal variability, which is strong at least on the short timescales, will exert an influence on temperature intermittence which is independent of the forcing. We demonstrate by a synthetic example that the differences in intermittencies observed by L&V easily can be accounted for by these effects under the assumption of a linear response. Our conclusion is that the analysis performed by L&V does not present valid evidence for a detectable nonlinear response in the global temperature in these climate models.

Expression Differentiation Is Constrained to Low-Expression Proteins over Ecological Timescales

PubMed Central

Margres, Mark J.; Wray, Kenneth P.; Seavy, Margaret; McGivern, James J.; Herrera, Nathanael D.; Rokyta, Darin R.

2016-01-01

Protein expression level is one of the strongest predictors of protein sequence evolutionary rate, with high-expression protein sequences evolving at slower rates than low-expression protein sequences largely because of constraints on protein folding and function. Expression evolutionary rates also have been shown to be negatively correlated with expression level across human and mouse orthologs over relatively long divergence times (i.e., ∼100 million years). Long-term evolutionary patterns, however, often cannot be extrapolated to microevolutionary processes (and vice versa), and whether this relationship holds for traits evolving under directional selection within a single species over ecological timescales (i.e., <5000 years) is unknown and not necessarily expected. Expression is a metabolically costly process, and the expression level of a particular protein is predicted to be a tradeoff between the benefit of its function and the costs of its expression. Selection should drive the expression level of all proteins close to values that maximize fitness, particularly for high-expression proteins because of the increased energetic cost of production. Therefore, stabilizing selection may reduce the amount of standing expression variation for high-expression proteins, and in combination with physiological constraints that may place an upper bound on the range of beneficial expression variation, these constraints could severely limit the availability of beneficial expression variants. To determine whether rapid-expression evolution was restricted to low-expression proteins owing to these constraints on highly expressed proteins over ecological timescales, we compared venom protein expression levels across mainland and island populations for three species of pit vipers. We detected significant differentiation in protein expression levels in two of the three species and found that rapid-expression differentiation was restricted to low-expression proteins. Our results suggest that various constraints on high-expression proteins reduce the availability of beneficial expression variants relative to low-expression proteins, enabling low-expression proteins to evolve and potentially lead to more rapid adaptation. PMID:26546003

Accurately Mapping M31's Microlensing Population

NASA Astrophysics Data System (ADS)

Crotts, Arlin

2004-07-01

We propose to augment an existing microlensing survey of M31 with source identifications provided by a modest amount of ACS {and WFPC2 parallel} observations to yield an accurate measurement of the masses responsible for microlensing in M31, and presumably much of its dark matter. The main benefit of these data is the determination of the physical {or "einstein"} timescale of each microlensing event, rather than an effective {"FWHM"} timescale, allowing masses to be determined more than twice as accurately as without HST data. The einstein timescale is the ratio of the lensing cross-sectional radius and relative velocities. Velocities are known from kinematics, and the cross-section is directly proportional to the {unknown} lensing mass. We cannot easily measure these quantities without knowing the amplification, hence the baseline magnitude, which requires the resolution of HST to find the source star. This makes a crucial difference because M31 lens m ass determinations can be more accurate than those towards the Magellanic Clouds through our Galaxy's halo {for the same number of microlensing events} due to the better constrained geometry in the M31 microlensing situation. Furthermore, our larger survey, just completed, should yield at least 100 M31 microlensing events, more than any Magellanic survey. A small amount of ACS+WFPC2 imaging will deliver the potential of this large database {about 350 nights}. For the whole survey {and a delta-function mass distribution} the mass error should approach only about 15%, or about 6% error in slope for a power-law distribution. These results will better allow us to pinpoint the lens halo fraction, and the shape of the halo lens spatial distribution, and allow generalization/comparison of the nature of halo dark matter in spiral galaxies. In addition, we will be able to establish the baseline magnitude for about 50, 000 variable stars, as well as measure an unprecedentedly deta iled color-magnitude diagram and luminosity function over much of M31.

Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation.

PubMed

Smolin, N; Biehl, R; Kneller, G R; Richter, D; Smith, J C

2012-03-07

Protein function often requires large-scale domain motion. An exciting new development in the experimental characterization of domain motions in proteins is the application of neutron spin-echo spectroscopy (NSE). NSE directly probes coherent (i.e., pair correlated) scattering on the ~1-100 ns timescale. Here, we report on all-atom molecular-dynamics (MD) simulation of a protein, phosphoglycerate kinase, from which we calculate small-angle neutron scattering (SANS) and NSE scattering properties. The simulation-derived and experimental-solution SANS results are in excellent agreement. The contributions of translational and rotational whole-molecule diffusion to the simulation-derived NSE and potential problems in their estimation are examined. Principal component analysis identifies types of domain motion that dominate the internal motion's contribution to the NSE signal, with the largest being classic hinge bending. The associated free-energy profiles are quasiharmonic and the frictional properties correspond to highly overdamped motion. The amplitudes of the motions derived by MD are smaller than those derived from the experimental analysis, and possible reasons for this difference are discussed. The MD results confirm that a significant component of the NSE arises from internal dynamics. They also demonstrate that the combination of NSE with MD is potentially useful for determining the forms, potentials of mean force, and time dependence of functional domain motions in proteins. Copyright © 2012 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Functional Domain Motions in Proteins on the ∼1–100 ns Timescale: Comparison of Neutron Spin-Echo Spectroscopy of Phosphoglycerate Kinase with Molecular-Dynamics Simulation

PubMed Central

Smolin, N.; Biehl, R.; Kneller, G.R.; Richter, D.; Smith, J.C.

2012-01-01

Protein function often requires large-scale domain motion. An exciting new development in the experimental characterization of domain motions in proteins is the application of neutron spin-echo spectroscopy (NSE). NSE directly probes coherent (i.e., pair correlated) scattering on the ∼1–100 ns timescale. Here, we report on all-atom molecular-dynamics (MD) simulation of a protein, phosphoglycerate kinase, from which we calculate small-angle neutron scattering (SANS) and NSE scattering properties. The simulation-derived and experimental-solution SANS results are in excellent agreement. The contributions of translational and rotational whole-molecule diffusion to the simulation-derived NSE and potential problems in their estimation are examined. Principal component analysis identifies types of domain motion that dominate the internal motion's contribution to the NSE signal, with the largest being classic hinge bending. The associated free-energy profiles are quasiharmonic and the frictional properties correspond to highly overdamped motion. The amplitudes of the motions derived by MD are smaller than those derived from the experimental analysis, and possible reasons for this difference are discussed. The MD results confirm that a significant component of the NSE arises from internal dynamics. They also demonstrate that the combination of NSE with MD is potentially useful for determining the forms, potentials of mean force, and time dependence of functional domain motions in proteins. PMID:22404933

Directly measuring single-molecule heterogeneity using force spectroscopy

PubMed Central

Hinczewski, Michael; Thirumalai, D.

2016-01-01

One of the most intriguing results of single-molecule experiments on proteins and nucleic acids is the discovery of functional heterogeneity: the observation that complex cellular machines exhibit multiple, biologically active conformations. The structural differences between these conformations may be subtle, but each distinct state can be remarkably long-lived, with interconversions between states occurring only at macroscopic timescales, fractions of a second or longer. Although we now have proof of functional heterogeneity in a handful of systems—enzymes, motors, adhesion complexes—identifying and measuring it remains a formidable challenge. Here, we show that evidence of this phenomenon is more widespread than previously known, encoded in data collected from some of the most well-established single-molecule techniques: atomic force microscopy or optical tweezer pulling experiments. We present a theoretical procedure for analyzing distributions of rupture/unfolding forces recorded at different pulling speeds. This results in a single parameter, quantifying the degree of heterogeneity, and also leads to bounds on the equilibration and conformational interconversion timescales. Surveying 10 published datasets, we find heterogeneity in 5 of them, all with interconversion rates slower than 10 s−1. Moreover, we identify two systems where additional data at realizable pulling velocities is likely to find a theoretically predicted, but so far unobserved crossover regime between heterogeneous and nonheterogeneous behavior. The significance of this regime is that it will allow far more precise estimates of the slow conformational switching times, one of the least understood aspects of functional heterogeneity. PMID:27317744

Movements of nonnative brook trout in relation to stream channel slope

Treesearch

Susan B. Adams; Christopher A. Frissell; Bruce E. Rieman

2000-01-01

Abstract.We provide new insights on the ability of naturalized brook trout Salvelinus fontinalis to ascend steep, headwater streams in the western USA. We tested hypotheses that upstream movements by brook trout are limited or absent in reaches of steep streams and are more prevalent and longer in gradually sloping streams. We compared brook trout...

Using Technology in Teacher Preparation: Two Mature Teacher Educators Negotiate the Steep Learning Curve

ERIC Educational Resources Information Center

Monroe, Eula; Tolman, Marvin

2004-01-01

This paper chronicles the ventures of two mature faculty members who continue to negotiate their own steep learning curves in helping teacher education students use current technology. It describes the scaffolding provided within the university setting for the faculty members' growth. Included are elements supported by a PT3 grant that have…

Hardwood silviculture and skyline yarding on steep slopes: economic and environmental impacts

Treesearch

John E. Baumgras; Chris B. LeDoux

1995-01-01

Ameliorating the visual and environmental impact associated with harvesting hardwoods on steep slopes will require the efficient use of skyline yarding along with silvicultural alternatives to clearcutting. In evaluating the effects of these alternatives on harvesting revenue, results of field studies and computer simulations were used to estimate costs and revenue for...

Ride-on lawnmowers warnings: slope measurements and safety-by-separation.

PubMed

Karnes, Edward W; Leonard, S David; Lenorovitz, David R

2012-01-01

Various single-rider open vehicles, such as lawnmowers, are susceptible to overturning on slopes that are too steep for them. Warnings have included separation from the vehicles and avoiding slopes that are too steep. A recommended maximum slope is commonly 15 degrees. However, many individuals cannot evaluate slopes just by sight. Some mower manufacturers have warned about too steep slopes and have provided slope gauges for users to determine the slopes in natural settings. This article evaluated the usefulness of such gauges for users who might be expected to need to evaluate slopes and the efficacy of a separation procedure for avoiding injuries. It was concluded that neither of these were likely to be successful and suggestions are made for alternative approaches.

Effects of low frequency ultrasonic treatment on the maturation of steeped greengage wine.

PubMed

Zheng, Xinhua; Zhang, Min; Fang, Zhongxiang; Liu, Yaping

2014-11-01

To accelerate wine maturation, low frequency ultrasonic waves of 28 kHz and 45 kHz were used to treat the steeped greengage wine. The contents of total acid, total ester, fusel oils and the wine chromaticity were determined before and after the ultrasonic treatment. The volatile compounds were analysed by GC-MS method, and the sensory quality was evaluated by panelist. The results indicated that ultrasonic treatment of the steeped greengage wine at 45 kHz 360 W for 30 min was effective to accelerate the aging process, where the fusel oils and alcohol compounds were significantly reduced and acid and ester compounds were significantly increased. Copyright © 2014 Elsevier Ltd. All rights reserved.

Natural periodicities and Northern Hemisphere-Southern Hemisphere connection of temperature changes during the last glacial period: EPICA and NGRIP data sets revisited

NASA Astrophysics Data System (ADS)

Alberti, Tommaso; Lepreti, Fabio; Vecchio, Antonio; Bevacqua, Emanuele; Capparelli, Vincenzo; Carbone, Vincenzo

2015-04-01

We investigate both the European Project for Ice Coring in Antarctica Dronning Maud Land (EDML) and North Greenland Ice-Core Project (NGRIP) δ18O data sets to study both the time evolution of the so-called Dansgaard-Oeschger events and the dynamics at longer timescales during the last glacial period, considering the interval 20 - 120 kyr B.P., since this is the interval in which significant temperature changes, that are the focus of the present work, are observed. To identify the main periodicities and their amplitudes, we applied the Empirical Mode Decomposition (EMD), a technique designed to investigate non-stationary data, by which both the δ18O time series are decomposed into a finite number m of oscillating intrinsic mode functions (IMFs) as 18 mΣ-1 δ O = Cj(t)+ rm(t) j=0 (1) where Cj(t) are the IMFs and rm(t) is a residue which provides the mean trend. We extract the proper modes of both the data sets confirming that natural cycles of abrupt climate changes exist and their occurrence cannot be due to random fluctuations in time. It is shown that the time behavior at the typical timescales of Dansgaard-Oeschger events is captured through signal reconstructions obtained by summing five EMD modes for NGRIP and four EMD modes for EDML. The reconstructions obtained by summing the successive modes can be used to describe the climate evolution at longer timescales, characterized by intervals in which Dansgaard-Oeschger events happen and intervals when these are not observed. Using EMD signal reconstructions and a simple model based on the one-dimensional Langevin equation, it is argued that the occurrence of a Dansgaard-Oeschger event can be described as an excitation of the climate system within the same state, while the longer timescale behavior appears to be due to transitions between different climate states. Finally, on the basis of a cross correlation analysis performed to investigate the North-South asynchrony, it is found that the clearest correlation occurs between the long-scale reconstructions at a lag of ≃ 3.05 kyr, which supports the view according to which the Antarctic climate changes lead that of Greenland, but on a longer time-scale than previously reported. The novelty introduced by this work is represented by the fact that we use EMD reconstructions to investigate the climate dynamics at different timescales and to highlight the behaviour of the climate system in order to describe transitions between two different stable states. We also suggest that the results of correlation analysis could be explained in the framework of seesaw models but building up a model which take into account our EMD filtered long timescales series. The results presented could be also useful for theoretical modeling of the climate evolution in order to study which kind of mechanisms are involved and to clarify the role of the ocean into coupling mechanism between the two hemispheres.

Natural periodicities and Northern Hemisphere-Southern Hemisphere connection of temperature changes during the last glacial period: EPICA and NGRIP data sets revisited

NASA Astrophysics Data System (ADS)

Alberti, Tommaso; Lepreti, Fabio; Vecchio, Antonio; Carbone, Vincenzo

2016-04-01

We investigate both the European Project for Ice Coring in Antarctica Dronning Maud Land (EDML) and North Greenland Ice-Core Project (NGRIP) δ18O data sets to study both the time evolution of the so-called Dansgaard-Oeschger events and the dynamics at longer timescales during the last glacial period, considering the interval 20 - 120 kyr B.P., since this is the interval in which significant temperature changes, that are the focus of the present work, are observed. To identify the main periodicities and their amplitudes, we applied the Empirical Mode Decomposition (EMD), a technique designed to investigate non-stationary data, by which both the δ18O time series are decomposed into a finite number m of oscillating intrinsic mode functions (IMFs) as 18 m∑-1 δ O = Cj(t)+ rm(t) j=0 (1) where Cj(t) are the IMFs and rm(t) is a residue which provides the mean trend. We extract the proper modes of both the data sets confirming that natural cycles of abrupt climate changes exist and their occurrence cannot be due to random fluctuations in time. It is shown that the time behavior at the typical timescales of Dansgaard-Oeschger events is captured through signal reconstructions obtained by summing five EMD modes for NGRIP and four EMD modes for EDML. The reconstructions obtained by summing the successive modes can be used to describe the climate evolution at longer timescales, characterized by intervals in which Dansgaard-Oeschger events happen and intervals when these are not observed. Using EMD signal reconstructions and a simple model based on the one-dimensional Langevin equation, it is argued that the occurrence of a Dansgaard-Oeschger event can be described as an excitation of the climate system within the same state, while the longer timescale behavior appears to be due to transitions between different climate states. Finally, on the basis of a cross correlation analysis performed to investigate the North-South asynchrony, it is found that the clearest correlation occurs between the long-scale reconstructions at a lag of ≃ 3.05 kyr, which supports the view according to which the Antarctic climate changes lead that of Greenland, but on a longer time-scale than previously reported. The novelty introduced by this work is represented by the fact that we use EMD reconstructions to investigate the climate dynamics at different timescales and to highlight the behaviour of the climate system in order to describe transitions between two different stable states. We also suggest that the results of correlation analysis could be explained in the framework of seesaw models but building up a model which take into account our EMD filtered long timescales series. The results presented could be also useful for theoretical modeling of the climate evolution in order to study which kind of mechanisms are involved and to clarify the role of the ocean into coupling mechanism between the two hemispheres.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khajenabi, Fazeleh, E-mail: f.khajenabi@gu.ac.ir

We investigate the orbital motion of cold clouds in the broad-line region of active galactic nuclei subject to the gravity of a black hole, a force due to a non-isotropic central source, and a drag force proportional to the velocity square. The intercloud is described using the standard solutions for the advection-dominated accretion flows. The orbit of a cloud decays because of the drag force, but the typical timescale of clouds falling onto the central black hole is shorter compared to the linear drag case. This timescale is calculated when a cloud moves through a static or rotating intercloud. Wemore » show that when the drag force is a quadratic function of the velocity, irrespective of the initial conditions and other input parameters, clouds will generally fall onto the central region much faster than the age of whole system, and since cold clouds present in most of the broad-line regions, we suggest that mechanisms for the continuous creation of the clouds must operate in these systems.« less

The dynamics of single protein molecules is non-equilibrium and self-similar over thirteen decades in time

DOE PAGES

Hu, Xiaohu; Hong, Liang; Smith, Micholas Dean; ...

2015-11-23

Here, internal motions of proteins are essential to their function. The time dependence of protein structural fluctuations is highly complex, manifesting subdiffusive, non-exponential behavior with effective relaxation times existing over many decades in time, from ps up to ~10 2s (refs 1-4). Here, using molecular dynamics simulations, we show that, on timescales from 10 –12 to 10 –5s, motions in single proteins are self-similar, non-equilibrium and exhibit ageing. The characteristic relaxation time for a distance fluctuation, such as inter-domain motion, is observation-time-dependent, increasing in a simple, power-law fashion, arising from the fractal nature of the topology and geometry of themore » energy landscape explored. Diffusion over the energy landscape follows a non-ergodic continuous time random walk. Comparison with single-molecule experiments suggests that the non-equilibrium self-similar dynamical behavior persists up to timescales approaching the in vivo lifespan of individual protein molecules.« less

Optical properties of transiently-excited semiconductor hyperbolic metamaterials

DOE PAGES

Campione, Salvatore; Luk, Ting S.; Liu, Sheng; ...

2015-10-02

Ultrafast optical excitation of photocarriers has the potential to transform undoped semiconductor superlattices into semiconductor hyperbolic metamaterials (SHMs). In this paper, we investigate the optical properties associated with such ultrafast topological transitions. We first show reflectance, transmittance, and absorption under TE and TM plane wave incidence. In the unpumped state, the superlattice exhibits a frequency region with high reflectance (>80%) and a region with low reflectance (<1%) for both TE and TM polarizations over a wide range of incidence angles. In contrast, in the photopumped state, the reflectance for both frequencies and polarizations is very low (<1%) for a similarmore » range of angles. Interestingly, this system can function as an all-optical reflection switch on ultrafast timescales. Furthermore, for TM incidence and close to the epsilon-near-zero point of the longitudinal permittivity, directional perfect absorption on ultrafast timescales may also be achieved. Lastly, we discuss the onset of negative refraction in the photopumped state.« less

Coordinated Acetylcholine Release in Prefrontal Cortex and Hippocampus Is Associated with Arousal and Reward on Distinct Timescales.

PubMed

Teles-Grilo Ruivo, Leonor M; Baker, Keeley L; Conway, Michael W; Kinsley, Peter J; Gilmour, Gary; Phillips, Keith G; Isaac, John T R; Lowry, John P; Mellor, Jack R

2017-01-24

Cholinergic neurotransmission throughout the neocortex and hippocampus regulates arousal, learning, and attention. However, owing to the poorly characterized timing and location of acetylcholine release, its detailed behavioral functions remain unclear. Using electrochemical biosensors chronically implanted in mice, we made continuous measurements of the spatiotemporal dynamics of acetylcholine release across multiple behavioral states. We found that tonic levels of acetylcholine release were coordinated between the prefrontal cortex and hippocampus and maximal during training on a rewarded working memory task. Tonic release also increased during REM sleep but was contingent on subsequent wakefulness. In contrast, coordinated phasic acetylcholine release occurred only during the memory task and was strongly localized to reward delivery areas without being contingent on trial outcome. These results show that coordinated acetylcholine release between the prefrontal cortex and hippocampus is associated with reward and arousal on distinct timescales, providing dual mechanisms to support learned behavior acquisition during cognitive task performance. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Stochastic dynamics of genetic broadcasting networks

NASA Astrophysics Data System (ADS)

Potoyan, Davit A.; Wolynes, Peter G.

2017-11-01

The complex genetic programs of eukaryotic cells are often regulated by key transcription factors occupying or clearing out of a large number of genomic locations. Orchestrating the residence times of these factors is therefore important for the well organized functioning of a large network. The classic models of genetic switches sidestep this timing issue by assuming the binding of transcription factors to be governed entirely by thermodynamic protein-DNA affinities. Here we show that relying on passive thermodynamics and random release times can lead to a "time-scale crisis" for master genes that broadcast their signals to a large number of binding sites. We demonstrate that this time-scale crisis for clearance in a large broadcasting network can be resolved by actively regulating residence times through molecular stripping. We illustrate these ideas by studying a model of the stochastic dynamics of the genetic network of the central eukaryotic master regulator NFκ B which broadcasts its signals to many downstream genes that regulate immune response, apoptosis, etc.

Catch and Release of Cytokines Mediated by Tumor Phosphatidylserine Converts Transient Exposure into Long-Lived Inflammation.

PubMed

Oyler-Yaniv, Jennifer; Oyler-Yaniv, Alon; Shakiba, Mojdeh; Min, Nina K; Chen, Ying-Han; Cheng, Sheue-Yann; Krichevsky, Oleg; Altan-Bonnet, Nihal; Altan-Bonnet, Grégoire

2017-06-01

Immune cells constantly survey the host for pathogens or tumors and secrete cytokines to alert surrounding cells of these threats. In vivo, activated immune cells secrete cytokines for several hours, yet an acute immune reaction occurs over days. Given these divergent timescales, we addressed how cytokine-responsive cells translate brief cytokine exposure into phenotypic changes that persist over long timescales. We studied melanoma cell responses to transient exposure to the cytokine interferon γ (IFNγ) by combining a systems-scale analysis of gene expression dynamics with computational modeling and experiments. We discovered that IFNγ is captured by phosphatidylserine (PS) on the surface of viable cells both in vitro and in vivo then slowly released to drive long-term transcription of cytokine-response genes. This mechanism introduces an additional function for PS in dynamically regulating inflammation across diverse cancer and primary cell types and has potential to usher in new immunotherapies targeting PS and inflammatory pathways. Published by Elsevier Inc.

Scaling relationships for nonadiabatic energy relaxation times in warm dense matter: toward understanding the equation of state.

PubMed

Pradhan, Ekadashi; Magyar, Rudolph J; Akimov, Alexey V

2016-11-30

Understanding the dynamics of electron-ion energy transfer in warm dense (WD) matter is important to the measurement of equation of state (EOS) properties and for understanding the energy balance in dynamic simulations. In this work, we present a comprehensive investigation of nonadiabatic electron relaxation and thermal excitation dynamics in aluminum under high pressure and temperature. Using quantum-classical trajectory surface hopping approaches, we examine the role of nonadiabatic couplings and electronic decoherence in electron-nuclear energy transfer in WD aluminum. The computed timescales range from 400 fs to 4.0 ps and are consistent with existing experimental studies. We have derived general scaling relationships between macroscopic parameters of WD systems such as temperature or mass density and the timescales of energy redistribution between quantum and classical degrees of freedom. The scaling laws are supported by computational results. We show that electronic decoherence plays essential role and can change the functional dependencies qualitatively. The established scaling relationships can be of use in modelling of WD matter.

Non-radiative relaxation of photoexcited chlorophylls: Theoretical and experimental study

DOE PAGES

Bricker, William P.; Shenai, Prathamesh M.; Ghosh, Avishek; ...

2015-09-08

Nonradiative relaxation of high-energy excited states to the lowest excited state in chlorophylls marks the first step in the process of photosynthesis. We perform ultrafast transient absorption spectroscopy measurements, that reveal this internal conversion dynamics to be slightly slower in chlorophyll B than in chlorophyll A. With modeling this process, non-adiabatic excited state molecular dynamics simulations uncovers a critical role played by the different side groups in the two molecules in governing the intramolecular redistribution of excited state wavefunction, leading, in turn, to different time-scales. Even given smaller electron-vibrational couplings compared to common organic conjugated chromophores, these molecules are ablemore » to efficiently dissipate about 1 eV of electronic energy into heat on the timescale of around 200 fs. This is achieved via selective participation of specific atomic groups and complex global migration of the wavefunction from the outer to inner ring, which may have important implications for biological light-harvesting function.« less

Pump dependence of the dynamics of quantum dot based waveguide absorbers

NASA Astrophysics Data System (ADS)

Viktorov, Evgeny A.; Erneux, Thomas; Piwonski, Tomasz; Pulka, Jaroslaw; Huyet, Guillaume; Houlihan, John

2012-06-01

The nonlinear two stage recovery of quantum dot based reverse-biased waveguide absorbers is investigated experimentally and analytically as a function of the initial ground state occupation probability of the dot. The latter is controlled experimentally by the pump pulse power. The slow stage of the recovery is exponential and its basic timescale is independent of pump power. The fast stage of the recovery is a logistic function which we analyze in detail. The relative strength of slow to fast components is highlighted and the importance of higher order absorption processes at the highest pump level is demonstrated.

Future possibilities in the prevention of breast cancer: Luteinizing hormone-releasing hormone agonists

PubMed Central

Spicer, Darcy V; Pike, Malcolm C

2000-01-01

The cyclic production of estrogen and progesterone by the premenopausal ovary accounts for the steep rise in breast cancer risk in premenopausal women. These hormones are breast cell mitogens. By reducing exposure to these ovarian hormones, agonists of luteinizing hormone-releasing hormone (LHRH) given to suppress ovarian function may prove useful in cancer prevention. To prevent deleterious effects of hypoestrogenemia, the addition of low-dose hormone replacement to the LHRH agonist appears necessary. Pilot data with such an approach indicates it is feasible and reduces mammographic densities. PMID:11250719

A Boundary-Layer Scaling Analysis Comparing Complex And Flat Terrain

NASA Astrophysics Data System (ADS)

Fitton, George; Tchiguirinskaia, Ioulia; Scherzter, Daniel; Lovejoy, Shaun

2013-04-01

A comparison of two boundary-layer (at approximately 50m) wind datasets shows the existence of reproducible scaling behaviour in two very topographically different sites. The first test site was in Corsica, an island in the South of France, subject to both orographic and convective effects due to its mountainous terrain and close proximity to the sea respectively. The data recorded in Corsica consisted of 10Hz sonic anemometer velocities measured over a six-month period. The second site consists of measurements from the Growian experiment. The testing site for this experiment was also in close proximity to the sea, however, the surrounding terrain is very flat. The data in this experiment was recorded using propellor anemometers at 2.5Hz. Note the resolution of the sonics was better, however, we found in both cases, using spectral methods, that the quality of the data was unusable below frequencies of one second. The scales that we will discuss therefore are from one second to fourteen hours. In both cases three scaling subranges are observed. Starting from the lower frequencies, both datasets have a spectral exponent of approximately two from six hours to fourteen hours. Our first scaling analyses were only done on the Corsica dataset and thus we proposed that this change in scaling was due to the orography. The steep slope of the hill on which the mast was positioned was causing the wind's orientation to be directed vertically. This implied that the vertical shears of the horizontal wind may scale as Bogiano-Obhukov's 11/5 power law. Further analysis on the second (Growian) dataset resulted in the same behaviour over the same time-scales. Since the Growian experiment was performed over nearly homogenous terrain our first hypothesis is questionable. Alternatively we propose that for frequencies above six hours Taylor's hypothesis is no longer valid. This implies that in order to observe the scaling properties of structures with eddy turnover times larger than six hours direct measurements in space are necessary. In again both cases, for time-scales less than six hours up to an hour we observed a scaling power law that resembled something between Kolmogorov's 5/3s and a -1 energy production power law (a spectral exponent of 1.3). Finally from one hour to a second, two very different scaling behaviours occurred. For the Corsica dataset we observe a (close to) purely Kolmogorov 5/3s scaling subrange suggesting surface-layer mixing is the dominant process. For the Growian dataset we observe a scaling subrange that is close to Bolgiano-Obhukov's 11/5s suggesting temperature plays a dominant role. Additionally, for the Growian dataset we found that temperature is an active scaler for time-scales above an hour unlike for the Cosica dataset. This suggests that orographic effects may suppress convective forces over the large scales resulting in different small scale shear profiles in the cascade process. Given we can reproduce this scaling behaviour within a multifractal framework it will be of great interest to stochastically simulate the corresponding vector fields for the two situations in order to properly understand the physical meaning of our observations.

Mechanism of transient force augmentation varying with two distinct timescales for interacting vortex rings

NASA Astrophysics Data System (ADS)

Fu, Zhidong; Qin, Suyang; Liu, Hong

2014-01-01

The dynamics of dual vortex ring flows is studied experimentally and numerically in a model system that consists of a piston-cylinder apparatus. The flows are generated by double identical strokes which have the velocity profile characterized by the sinusoidal function of half the period. By calculating the total wake impulse in two strokes in the experiments, it is found that the average propulsive force increases by 50% in the second stroke for the sufficiently small stroke length, compared with the first stroke. In the numerical simulations, two types of transient force augmentation are revealed, there being the transient force augmentation for the small stroke lengths and the absolute transient force augmentation for the large stroke lengths. The relative transient force augmentation increases to 78% for L/D = 1, while the absolute transient force augmentation for L/D = 4 is twice as much as that for L/D = 1. Further investigation demonstrates that the force augmentation is attributed to the interaction between vortex rings, which induces transport of vortex impulse and more evident fluid entrainment. The critical situation of vortex ring separation is defined and indicated, with vortex spacing falling in a narrow gap when the stroke lengths vary. A new model is proposed concerning the limiting process of impulse, further suggesting that apart from vortex formation timescale, vortex spacing should be interpreted as an independent timescale to reflect the dynamics of vortex interaction.

Development of compositional and contextual communicable congruence in robots by using dynamic neural network models.

PubMed

Park, Gibeom; Tani, Jun

2015-12-01

The current study presents neurorobotics experiments on acquisition of skills for "communicable congruence" with human via learning. A dynamic neural network model which is characterized by its multiple timescale dynamics property was utilized as a neuromorphic model for controlling a humanoid robot. In the experimental task, the humanoid robot was trained to generate specific sequential movement patterns as responding to various sequences of imperative gesture patterns demonstrated by the human subjects by following predefined compositional semantic rules. The experimental results showed that (1) the adopted MTRNN can achieve generalization by learning in the lower feature perception level by using a limited set of tutoring patterns, (2) the MTRNN can learn to extract compositional semantic rules with generalization in its higher level characterized by slow timescale dynamics, (3) the MTRNN can develop another type of cognitive capability for controlling the internal contextual processes as situated to on-going task sequences without being provided with cues for explicitly indicating task segmentation points. The analysis on the dynamic property developed in the MTRNN via learning indicated that the aforementioned cognitive mechanisms were achieved by self-organization of adequate functional hierarchy by utilizing the constraint of the multiple timescale property and the topological connectivity imposed on the network configuration. These results of the current research could contribute to developments of socially intelligent robots endowed with cognitive communicative competency similar to that of human. Copyright © 2015 Elsevier Ltd. All rights reserved.

Size limits for rounding of volcanic ash particles heated by lightning

PubMed Central

Vasseur, Jérémie; Llewellin, Edward W.; Genareau, Kimberly; Cimarelli, Corrado; Dingwell, Donald B.

2017-01-01

Abstract Volcanic ash particles can be remelted by the high temperatures induced in volcanic lightning discharges. The molten particles can round under surface tension then quench to produce glass spheres. Melting and rounding timescales for volcanic materials are strongly dependent on heating duration and peak temperature and are shorter for small particles than for large particles. Therefore, the size distribution of glass spheres recovered from ash deposits potentially record the short duration, high‐temperature conditions of volcanic lightning discharges, which are hard to measure directly. We use a 1‐D numerical solution to the heat equation to determine the timescales of heating and cooling of volcanic particles during and after rapid heating and compare these with the capillary timescale for rounding an angular particle. We define dimensionless parameters—capillary, Fourier, Stark, Biot, and Peclet numbers—to characterize the competition between heat transfer within the particle, heat transfer at the particle rim, and capillary motion, for particles of different sizes. We apply this framework to the lightning case and constrain a maximum size for ash particles susceptible to surface tension‐driven rounding, as a function of lightning temperature and duration, and ash properties. The size limit agrees well with maximum sizes of glass spheres found in volcanic ash that has been subjected to lightning or experimental discharges, demonstrating that the approach that we develop can be used to obtain a first‐order estimate of lightning conditions in volcanic plumes. PMID:28781929

IONIZATION EQUILIBRIUM TIMESCALES IN COLLISIONAL PLASMAS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, Randall K.; Hughes, John P., E-mail: rsmith@cfa.harvard.ed, E-mail: jph@physics.rutgers.ed

2010-07-20

Astrophysical shocks or bursts from a photoionizing source can disturb the typical collisional plasma found in galactic interstellar media or the intergalactic medium. The spectrum emitted by this plasma contains diagnostics that have been used to determine the time since the disturbing event, although this determination becomes uncertain as the elements in the plasma return to ionization equilibrium. A general solution for the equilibrium timescale for each element arises from the elegant eigenvector method of solution to the problem of a non-equilibrium plasma described by Masai and Hughes and Helfand. In general, the ionization evolution of an element Z inmore » a constant electron temperature plasma is given by a coupled set of Z + 1 first-order differential equations. However, they can be recast as Z uncoupled first-order differential equations using an eigenvector basis for the system. The solution is then Z separate exponential functions, with the time constants given by the eigenvalues of the rate matrix. The smallest of these eigenvalues gives the scale of the slowest return to equilibrium independent of the initial conditions, while conversely the largest eigenvalue is the scale of the fastest change in the ion population. These results hold for an ionizing plasma, a recombining plasma, or even a plasma with random initial conditions, and will allow users of these diagnostics to determine directly if their best-fit result significantly limits the timescale since a disturbance or is so close to equilibrium as to include an arbitrarily long time.« less

Size limits for rounding of volcanic ash particles heated by lightning.

PubMed

Wadsworth, Fabian B; Vasseur, Jérémie; Llewellin, Edward W; Genareau, Kimberly; Cimarelli, Corrado; Dingwell, Donald B

2017-03-01

Volcanic ash particles can be remelted by the high temperatures induced in volcanic lightning discharges. The molten particles can round under surface tension then quench to produce glass spheres. Melting and rounding timescales for volcanic materials are strongly dependent on heating duration and peak temperature and are shorter for small particles than for large particles. Therefore, the size distribution of glass spheres recovered from ash deposits potentially record the short duration, high-temperature conditions of volcanic lightning discharges, which are hard to measure directly. We use a 1-D numerical solution to the heat equation to determine the timescales of heating and cooling of volcanic particles during and after rapid heating and compare these with the capillary timescale for rounding an angular particle. We define dimensionless parameters-capillary, Fourier, Stark, Biot, and Peclet numbers-to characterize the competition between heat transfer within the particle, heat transfer at the particle rim, and capillary motion, for particles of different sizes. We apply this framework to the lightning case and constrain a maximum size for ash particles susceptible to surface tension-driven rounding, as a function of lightning temperature and duration, and ash properties. The size limit agrees well with maximum sizes of glass spheres found in volcanic ash that has been subjected to lightning or experimental discharges, demonstrating that the approach that we develop can be used to obtain a first-order estimate of lightning conditions in volcanic plumes.

Size limits for rounding of volcanic ash particles heated by lightning

NASA Astrophysics Data System (ADS)

Wadsworth, Fabian B.; Vasseur, Jérémie; Llewellin, Edward W.; Genareau, Kimberly; Cimarelli, Corrado; Dingwell, Donald B.

2017-03-01

Volcanic ash particles can be remelted by the high temperatures induced in volcanic lightning discharges. The molten particles can round under surface tension then quench to produce glass spheres. Melting and rounding timescales for volcanic materials are strongly dependent on heating duration and peak temperature and are shorter for small particles than for large particles. Therefore, the size distribution of glass spheres recovered from ash deposits potentially record the short duration, high-temperature conditions of volcanic lightning discharges, which are hard to measure directly. We use a 1-D numerical solution to the heat equation to determine the timescales of heating and cooling of volcanic particles during and after rapid heating and compare these with the capillary timescale for rounding an angular particle. We define dimensionless parameters—capillary, Fourier, Stark, Biot, and Peclet numbers—to characterize the competition between heat transfer within the particle, heat transfer at the particle rim, and capillary motion, for particles of different sizes. We apply this framework to the lightning case and constrain a maximum size for ash particles susceptible to surface tension-driven rounding, as a function of lightning temperature and duration, and ash properties. The size limit agrees well with maximum sizes of glass spheres found in volcanic ash that has been subjected to lightning or experimental discharges, demonstrating that the approach that we develop can be used to obtain a first-order estimate of lightning conditions in volcanic plumes.

The UV Luminosity Function at 6 < z < 10 from the Hubble Frontier Fields

NASA Astrophysics Data System (ADS)

Livermore, Rachael C.; Finkelstein, Steven L.; Lotz, Jennifer M.

2017-01-01

The Hubble Frontier Fields program has obtained deep optical and near-infrared Hubble Space Telescope imaging of six galaxy clusters and associated parallel fields. The depth of the imaging (m_AB ~ 29) means we can identify faint galaxies at z > 6, and those in the cluster fields also benefit from magnification due to strong gravitational lensing that allows us to reach intrinsic absolute magnitudes of M_UV ~ -12.5 at z ~ 6. Here, we present the UV luminosity functions at 6 < z < 10 from the complete Hubble Frontier Fields data, revealing a steep faint-end slope that extends to the limits of the data. The lack of any apparent turnover in the luminosity functions means that faint galaxies in the early Universe may have provided sufficient ionizing radiation to sustain reionization.

Timescale Halo: Average-Speed Targets Elicit More Positive and Less Negative Attributions than Slow or Fast Targets

PubMed Central

Hernandez, Ivan; Preston, Jesse Lee; Hepler, Justin

2014-01-01

Research on the timescale bias has found that observers perceive more capacity for mind in targets moving at an average speed, relative to slow or fast moving targets. The present research revisited the timescale bias as a type of halo effect, where normal-speed people elicit positive evaluations and abnormal-speed (slow and fast) people elicit negative evaluations. In two studies, participants viewed videos of people walking at a slow, average, or fast speed. We find evidence for a timescale halo effect: people walking at an average-speed were attributed more positive mental traits, but fewer negative mental traits, relative to slow or fast moving people. These effects held across both cognitive and emotional dimensions of mind and were mediated by overall positive/negative ratings of the person. These results suggest that, rather than eliciting greater perceptions of general mind, the timescale bias may reflect a generalized positivity toward average speed people relative to slow or fast moving people. PMID:24421882

Mobility of large woody debris (LWD) jams in a low gradient channel

NASA Astrophysics Data System (ADS)

Curran, Joanna C.

2010-04-01

Mobility of large woody debris (LWD) in low gradient channels is an important but often overlooked transport process. The majority of studies on LWD have focused on its role in geomorphic and ecologic river processes. When jams extend across the width of the channel, they have the potential to retain sediment and alter the channel profile. When jams obstruct only a portion of the channel, they can re-direct flow, altering patterns of scour and deposition. The boundary complexity created by LWD has a recognized role in riverine ecosystems which has led to programs of replacing LWD in-channel corridors where it was previously removed. Although LWD jams are common in rivers around the world, they have been studied most intensely in steep, forested channel reaches where they are often found to be stable channel features. It is not fully known how much of the information on LWD from steep forested channels will transfer to other channel types. Whereas it may be reasonable to assume that the ecological benefits of LWD are similar in low gradient channels, research has shown that a much higher rate of LWD transport occurs in low gradient channels, with jams mobilized on timescales of 10 0-10 2 years. This study evaluates the distribution and mobility of LWD over 72 km of the San Antonio River, a low gradient channel in southeast Texas. LWD jam locations were identified for 2003 and 2007 using a combination of aerial photography and field mapping. Each jam was cataloged according to its location in the channel cross-section and the amount of channel area blocked. During the four-year period, all the LWD jams were mobilized, including those jams extending across the channel width. Although easily mobilized, 34 jams re-form in the same locations, creating 34 channel locations with persistent LWD jams. Data from the San Antonio River are applied to two models developed to predict LWD mobility and transport distances to assess the applicability of each model to a low gradient channel. The locations of stable (or recurring) LWD jams were matched to model results where predicted LWD transport distances were equal to measured LWD jam spacing. Model results showed good agreement with the mean and median spacing of LWD jams when given input parameters specific to the channel and wood species. The ability to predict where LWD jams will persist over time in a low gradient channel has application in watershed management. Persistent LWD jams can exert a greater influence on channel morphology and may require active management.

Hindcasting of decadal‐timescale estuarine bathymetric change with a tidal‐timescale model

USGS Publications Warehouse

Ganju, Neil K.; Schoellhamer, David H.; Jaffe, Bruce E.

2009-01-01

Hindcasting decadal-timescale bathymetric change in estuaries is prone to error due to limited data for initial conditions, boundary forcing, and calibration; computational limitations further hinder efforts. We developed and calibrated a tidal-timescale model to bathymetric change in Suisun Bay, California, over the 1867–1887 period. A general, multiple-timescale calibration ensured robustness over all timescales; two input reduction methods, the morphological hydrograph and the morphological acceleration factor, were applied at the decadal timescale. The model was calibrated to net bathymetric change in the entire basin; average error for bathymetric change over individual depth ranges was 37%. On a model cell-by-cell basis, performance for spatial amplitude correlation was poor over the majority of the domain, though spatial phase correlation was better, with 61% of the domain correctly indicated as erosional or depositional. Poor agreement was likely caused by the specification of initial bed composition, which was unknown during the 1867–1887 period. Cross-sectional bathymetric change between channels and flats, driven primarily by wind wave resuspension, was modeled with higher skill than longitudinal change, which is driven in part by gravitational circulation. The accelerated response of depth may have prevented gravitational circulation from being represented properly. As performance criteria became more stringent in a spatial sense, the error of the model increased. While these methods are useful for estimating basin-scale sedimentation changes, they may not be suitable for predicting specific locations of erosion or deposition. They do, however, provide a foundation for realistic estuarine geomorphic modeling applications.

Potential and timescales for oxygen depletion in coastal upwelling systems: A box-model analysis

NASA Astrophysics Data System (ADS)

Harrison, C. S.; Hales, B.; Siedlecki, S.; Samelson, R. M.

2016-05-01

A simple box model is used to examine oxygen depletion in an idealized ocean-margin upwelling system. Near-bottom oxygen depletion is controlled by a competition between flushing with oxygenated offshore source waters and respiration of particulate organic matter produced near the surface and retained near the bottom. Upwelling-supplied nutrients are consumed in the surface box, and some surface particles sink to the bottom where they respire, consuming oxygen. Steady states characterize the potential for hypoxic near-bottom oxygen depletion; this potential is greatest for faster sinking rates, and largely independent of production timescales except in that faster production allows faster sinking. Timescales for oxygen depletion depend on upwelling and productivity differently, however, as oxygen depletion can only be reached in meaningfully short times when productivity is rapid. Hypoxia thus requires fast production, to capture upwelled nutrients, and fast sinking, to deliver the respiration potential to model bottom waters. Combining timescales allows generalizations about tendencies toward hypoxia. If timescales of sinking are comparable to or smaller than the sum of those for respiration and flushing, the steady state will generally be hypoxic, and results indicate optimal timescales and conditions exist to generate hypoxia. For example, the timescale for approach to hypoxia lengthens with stronger upwelling, since surface particle and nutrient are shunted off-shelf, in turn reducing subsurface respiration and oxygen depletion. This suggests that if upwelling winds intensify with climate change the increased forcing could offer mitigation of coastal hypoxia, even as the oxygen levels in upwelled source waters decline.

Collective dynamic dipole moment and orientation fluctuations, cooperative hydrogen bond relaxations, and their connections to dielectric relaxation in ionic acetamide deep eutectics: Microscopic insight from simulations

NASA Astrophysics Data System (ADS)

Das, Suman; Biswas, Ranjit; Mukherjee, Biswaroop

2016-08-01

The paper reports a detailed simulation study on collective reorientational relaxation, cooperative hydrogen bond (H-bond) fluctuations, and their connections to dielectric relaxation (DR) in deep eutectic solvents made of acetamide and three uni-univalent electrolytes, lithium nitrate (LiNO3), lithium bromide (LiBr), and lithium perchlorate (LiClO4). Because cooperative H-bond fluctuations and ion migration complicate the straightforward interpretation of measured DR timescales in terms of molecular dipolar rotations for these conducting media which support extensive intra- and inter-species H-bonding, one needs to separate out the individual components from the overall relaxation for examining the microscopic origin of various timescales. The present study does so and finds that reorientation of ion-complexed acetamide molecules generates relaxation timescales that are in sub-nanosecond to nanosecond range. This explains in molecular terms the nanosecond timescales reported by recent giga-Hertz DR measurements. Interestingly, the simulated survival timescale for the acetamide-Li+ complex has been found to be a few tens of nanosecond, suggesting such a cation-complexed species may be responsible for a similar timescale reported by mega-Hertz DR measurements of acetamide/potassium thiocyanate deep eutectics near room temperature. The issue of collective versus single particle relaxation is discussed, and jump waiting time distributions are determined. Dependence on anion-identity in each of the cases has been examined. In short, the present study demonstrates that assumption of nano-sized domain formation is not required for explaining the DR detected nanosecond and longer timescales in these media.

Partitioning controls on Amazon forest photosynthesis between environmental and biotic factors at hourly to interannual timescales

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Jin; Guan, Kaiyu; Hayek, Matthew

Gross ecosystem productivity (GEP) in tropical forests varies both with the environment and with biotic changes in photosynthetic infrastructure, but our understanding of the relative effects of these factors across timescales is limited. Here, we used a statistical model to partition the variability of seven years of eddy covariance-derived GEP in a central Amazon evergreen forest into two main causes: variation in environmental drivers (solar radiation, diffuse light fraction, and vapor pressure deficit) that interact with model parameters that govern photosynthesis and biotic variation in canopy photosynthetic light-use efficiency associated with changes in the parameters themselves. Our fitted model wasmore » able to explain most of the variability in GEP at hourly (R 2 = 0.77) to interannual (R 2 = 0.80) timescales. At hourly timescales, we found that 75% of observed GEP variability could be attributed to environmental variability. When aggregating GEP to the longer timescales (daily, monthly, and yearly), however, environmental variation explained progressively less GEP variability: At monthly timescales, it explained only 3%, much less than biotic variation in canopy photosynthetic light-use efficiency, which accounted for 63%. These results challenge modeling approaches that assume GEP is primarily controlled by the environment at both short and long timescales. Our approach distinguishing biotic from environmental variability can help to resolve debates about environmental limitations to tropical forest photosynthesis. For example, we found that biotically regulated canopy photosynthetic light-use efficiency (associated with leaf phenology) increased with sunlight during dry seasons (consistent with light but not water limitation of canopy development) but that realized GEP was nonetheless lower relative to its potential efficiency during dry than wet seasons (consistent with water limitation of photosynthesis in given assemblages of leaves). Lastly, this work highlights the importance of accounting for differential regulation of GEP at different timescales and of identifying the underlying feedbacks and adaptive mechanisms.« less

Partitioning controls on Amazon forest photosynthesis between environmental and biotic factors at hourly to interannual timescales

DOE PAGES

Wu, Jin; Guan, Kaiyu; Hayek, Matthew; ...

2016-09-19

Gross ecosystem productivity (GEP) in tropical forests varies both with the environment and with biotic changes in photosynthetic infrastructure, but our understanding of the relative effects of these factors across timescales is limited. Here, we used a statistical model to partition the variability of seven years of eddy covariance-derived GEP in a central Amazon evergreen forest into two main causes: variation in environmental drivers (solar radiation, diffuse light fraction, and vapor pressure deficit) that interact with model parameters that govern photosynthesis and biotic variation in canopy photosynthetic light-use efficiency associated with changes in the parameters themselves. Our fitted model wasmore » able to explain most of the variability in GEP at hourly (R 2 = 0.77) to interannual (R 2 = 0.80) timescales. At hourly timescales, we found that 75% of observed GEP variability could be attributed to environmental variability. When aggregating GEP to the longer timescales (daily, monthly, and yearly), however, environmental variation explained progressively less GEP variability: At monthly timescales, it explained only 3%, much less than biotic variation in canopy photosynthetic light-use efficiency, which accounted for 63%. These results challenge modeling approaches that assume GEP is primarily controlled by the environment at both short and long timescales. Our approach distinguishing biotic from environmental variability can help to resolve debates about environmental limitations to tropical forest photosynthesis. For example, we found that biotically regulated canopy photosynthetic light-use efficiency (associated with leaf phenology) increased with sunlight during dry seasons (consistent with light but not water limitation of canopy development) but that realized GEP was nonetheless lower relative to its potential efficiency during dry than wet seasons (consistent with water limitation of photosynthesis in given assemblages of leaves). Lastly, this work highlights the importance of accounting for differential regulation of GEP at different timescales and of identifying the underlying feedbacks and adaptive mechanisms.« less

Partitioning controls on Amazon forest photosynthesis between environmental and biotic factors at hourly to interannual timescales.

PubMed

Wu, Jin; Guan, Kaiyu; Hayek, Matthew; Restrepo-Coupe, Natalia; Wiedemann, Kenia T; Xu, Xiangtao; Wehr, Richard; Christoffersen, Bradley O; Miao, Guofang; da Silva, Rodrigo; de Araujo, Alessandro C; Oliviera, Raimundo C; Camargo, Plinio B; Monson, Russell K; Huete, Alfredo R; Saleska, Scott R

2017-03-01

Gross ecosystem productivity (GEP) in tropical forests varies both with the environment and with biotic changes in photosynthetic infrastructure, but our understanding of the relative effects of these factors across timescales is limited. Here, we used a statistical model to partition the variability of seven years of eddy covariance-derived GEP in a central Amazon evergreen forest into two main causes: variation in environmental drivers (solar radiation, diffuse light fraction, and vapor pressure deficit) that interact with model parameters that govern photosynthesis and biotic variation in canopy photosynthetic light-use efficiency associated with changes in the parameters themselves. Our fitted model was able to explain most of the variability in GEP at hourly (R 2  = 0.77) to interannual (R 2  = 0.80) timescales. At hourly timescales, we found that 75% of observed GEP variability could be attributed to environmental variability. When aggregating GEP to the longer timescales (daily, monthly, and yearly), however, environmental variation explained progressively less GEP variability: At monthly timescales, it explained only 3%, much less than biotic variation in canopy photosynthetic light-use efficiency, which accounted for 63%. These results challenge modeling approaches that assume GEP is primarily controlled by the environment at both short and long timescales. Our approach distinguishing biotic from environmental variability can help to resolve debates about environmental limitations to tropical forest photosynthesis. For example, we found that biotically regulated canopy photosynthetic light-use efficiency (associated with leaf phenology) increased with sunlight during dry seasons (consistent with light but not water limitation of canopy development) but that realized GEP was nonetheless lower relative to its potential efficiency during dry than wet seasons (consistent with water limitation of photosynthesis in given assemblages of leaves). This work highlights the importance of accounting for differential regulation of GEP at different timescales and of identifying the underlying feedbacks and adaptive mechanisms. © 2016 John Wiley & Sons Ltd.

Rill and gully formation following the 2010 Schultz Fire

Treesearch

Daniel G. Neary; Karen A. Koestner; Ann Youberg; Peter E. Koestner

2011-01-01

The Schultz Fire burned 6,100 ha on the eastern slopes of the San Francisco Peaks across moderate to very steep ponderosa pine and mixed conifer watersheds. There was widespread occurrence of high severity fire, with several watersheds classified as over 50% high severity. This resulted in moderate to severe water repellency in most soils, especially those on steep...

A sediment transport model for incision of gullies on steep topography

Treesearch

Erkan Istanbulluoglu; David G. Tarboton; Robert T. Pack; Charles H. Luce

2003-01-01

We have conducted surveys of gullies that developed in a small, steep watershed in the Idaho Batholith after a severe wildfire followed by intense precipitation. We measured gully length and cross sections to estimate the volumes of sediment loss due to gully formation. These volume estimates are assumed to provide an estimate of sediment transport capacity at each...

Productivity and cost estimators for conventional ground-based skidding on steep terrain using preplanned skid roads

Treesearch

Michael D. Erickson; Curt C. Hassler; Chris B. LeDoux

1991-01-01

Continuous time and motion study techniques were used to develop productivity and cost estimators for the skidding component of ground-based logging systems, operating on steep terrain using preplanned skid roads. Comparisons of productivity and costs were analyzed for an overland random access skidding method, verses a skidding method utilizing a network of preplanned...

Water resources of the River Rouge basin southeastern Michigan

USGS Publications Warehouse

Knutilla, R.L.

1971-01-01

The River Rouge basin is characterized by moderately hilly topography to the northwest graduating to a relatively level land surface to the south east.Stream gradients near the northwestern basin divide are relatively steep; but many become more steep in reaches where they cross beach lines of former glacial lakes. In the lower reaches of the River Rouge gradients lessen.

F-16 MMC Strafe in Mountainous Terrain

DTIC Science & Technology

2016-04-01

19 Figure 10. Steep fast (480 KIAS ) high-angle strafe...a fast (480 KIAS in this example) approach varies from the recovery radius (4000 feet in this case) and down track range prior to recovery initiation...Steep fast (480 KIAS ) high-angle strafe Alternate Analysis The F-16 community, to some extent, has adopted high-angle strafe as the de facto strafe

Hill functions for stochastic gene regulatory networks from master equations with split nodes and time-scale separation

NASA Astrophysics Data System (ADS)

Lipan, Ovidiu; Ferwerda, Cameron

2018-02-01

The deterministic Hill function depends only on the average values of molecule numbers. To account for the fluctuations in the molecule numbers, the argument of the Hill function needs to contain the means, the standard deviations, and the correlations. Here we present a method that allows for stochastic Hill functions to be constructed from the dynamical evolution of stochastic biocircuits with specific topologies. These stochastic Hill functions are presented in a closed analytical form so that they can be easily incorporated in models for large genetic regulatory networks. Using a repressive biocircuit as an example, we show by Monte Carlo simulations that the traditional deterministic Hill function inaccurately predicts time of repression by an order of two magnitudes. However, the stochastic Hill function was able to capture the fluctuations and thus accurately predicted the time of repression.

From Sequence and Forces to Structure, Function and Evolution of Intrinsically Disordered Proteins

PubMed Central

Forman-Kay, Julie D.; Mittag, Tanja

2015-01-01

Intrinsically disordered proteins (IDPs), which lack persistent structure, are a challenge to structural biology due to the inapplicability of standard methods for characterization of folded proteins as well as their deviation from the dominant structure/function paradigm. Their widespread presence and involvement in biological function, however, has spurred the growing acceptance of the importance of IDPs and the development of new tools for studying their structure, dynamics and function. The interplay of folded and disordered domains or regions for function and the existence of a continuum of protein states with respect to conformational energetics, motional timescales and compactness is shaping a unified understanding of structure-dynamics-disorder/function relationships. On the 20th anniversary of this journal, Structure, we provide a historical perspective on the investigation of IDPs and summarize the sequence features and physical forces that underlie their unique structural, functional and evolutionary properties. PMID:24010708

From sequence and forces to structure, function, and evolution of intrinsically disordered proteins.

PubMed

Forman-Kay, Julie D; Mittag, Tanja

2013-09-03

Intrinsically disordered proteins (IDPs), which lack persistent structure, are a challenge to structural biology due to the inapplicability of standard methods for characterization of folded proteins as well as their deviation from the dominant structure/function paradigm. Their widespread presence and involvement in biological function, however, has spurred the growing acceptance of the importance of IDPs and the development of new tools for studying their structure, dynamics, and function. The interplay of folded and disordered domains or regions for function and the existence of a continuum of protein states with respect to conformational energetics, motional timescales, and compactness are shaping a unified understanding of structure-dynamics-disorder/function relationships. In the 20(th) anniversary of Structure, we provide a historical perspective on the investigation of IDPs and summarize the sequence features and physical forces that underlie their unique structural, functional, and evolutionary properties. Copyright © 2013 Elsevier Ltd. All rights reserved.

Green infrastructure in high-rise residential development on steep slopes in city of Vladivostok

NASA Astrophysics Data System (ADS)

Kopeva, Alla; Ivanova, Olga; Khrapko, Olga

2018-03-01

The purpose of this study is to identify the facilities of green infrastructure that are able to improve living conditions in an urban environment in high-rise residential apartments buildings on steep slopes in the city of Vladivostok. Based on the analysis of theoretical sources and practices that can be observed in the world, green infrastructure facilities have been identified. These facilities meet the criteria of the sustainable development concept, and can be used in the city of Vladivostok. They include green roofs, green walls, and greening of disturbed slopes. All the existing high-rise apartments buildings situated on steep slopes in the city of Vladivostok, have been studied. It is concluded that green infrastructure is necessary to be used in new projects connected with designing and constructing of residential apartments buildings on steep slopes, as well as when upgrading the projects that have already been implemented. That will help to regulate the ecological characteristics of the sites. The results of the research can become a basis for increasing the sustainability of the habitat, and will facilitate the adoption of decisions in the field of urban design and planning.

The impact of steeping, germination and hydrothermal processing of wheat (Triticum aestivum L.) grains on phytate hydrolysis and the distribution, speciation and bio-accessibility of iron and zinc elements.

PubMed

Lemmens, Elien; De Brier, Niels; Spiers, Kathryn M; Ryan, Chris; Garrevoet, Jan; Falkenberg, Gerald; Goos, Peter; Smolders, Erik; Delcour, Jan A

2018-10-30

Chelation of iron and zinc in wheat as phytates lowers their bio-accessibility. Steeping and germination (15 °C, 120 h) lowered phytate content from 0.96% to only 0.81% of initial dry matter. A multifactorial experiment in which (steeped/germinated) wheat was subjected to different time (2-24 h), temperature (20-80 °C) and pH (2.0-8.0) conditions showed that hydrothermal processing of germinated (15 °C, 120 h) wheat at 50 °C and pH 3.8 for 24 h reduced phytate content by 95%. X-ray absorption near-edge structure imaging showed that it indeed abolished chelation of iron to phytate. It also proved that iron was oxidized during steeping, germination and hydrothermal processing. It was further shown that zinc and iron bio-accessibility were respectively 3 and 5% in wheat and 27 and 37% in hydrothermally processed wheat. Thus, hydrothermal processing of (germinated) wheat paves the way for increasing elemental bio-accessibility in whole grain-based products. Copyright © 2018 Elsevier Ltd. All rights reserved.

Geometrical effects of conventional and digital prosthodontic planning wax-ups on lateral occlusal contact number, contact area, and steepness.

PubMed

Abduo, Jaafar

2017-01-01

This study evaluated and compared the effect of conventional and digital wax-ups on three lateral occlusion variables: contact number, contact area, and steepness. Dental casts of 10 patients with Angle Class I relationship were included in the study. All patients required fixed prosthodontic treatment that would affect lateral occlusion. The casts of all patients received conventional and digital wax-ups. For pretreatment, conventional wax-up, and digital wax-up casts, contact number, contact area, and occlusion steepness were measured at four lateral positions, that is, at excursions of 0.5, 1.0, 2.0, and 3.0 mm from maximal intercuspation. Lateral occlusion scheme variables were affected by use of diagnostic wax-ups. For all types of casts, contact number decreased as excursion increased. The two types of wax-ups had similar contact number patterns, and contact number was significantly greater for these casts than for pretreatment casts in the earlier stages of excursion. Similarly, contact area gradually decreased with increasing excursion in the pretreatment and conventional and digital wax-up casts. There was only a minimal decrease in occlusion steepness as excursion increased. However, lateral occlusion was generally steeper for digital wax-up casts.

Lidar-Based Rock-Fall Hazard Characterization of Cliffs

USGS Publications Warehouse

Collins, Brian D.; Greg M.Stock,

2017-01-01

Rock falls from cliffs and other steep slopes present numerous challenges for detailed geological characterization. In steep terrain, rock-fall source areas are both dangerous and difficult to access, severely limiting the ability to make detailed structural and volumetric measurements necessary for hazard assessment. Airborne and terrestrial lidar survey methods can provide high-resolution data needed for volumetric, structural, and deformation analyses of rock falls, potentially making these analyses straightforward and routine. However, specific methods to collect, process, and analyze lidar data of steep cliffs are needed to maximize analytical accuracy and efficiency. This paper presents observations showing how lidar data sets should be collected, filtered, registered, and georeferenced to tailor their use in rock fall characterization. Additional observations concerning surface model construction, volumetric calculations, and deformation analysis are also provided.

Sensitivity Challenge of Steep Transistors

NASA Astrophysics Data System (ADS)

Ilatikhameneh, Hesameddin; Ameen, Tarek A.; Chen, ChinYi; Klimeck, Gerhard; Rahman, Rajib

2018-04-01

Steep transistors are crucial in lowering power consumption of the integrated circuits. However, the difficulties in achieving steepness beyond the Boltzmann limit experimentally have hindered the fundamental challenges in application of these devices in integrated circuits. From a sensitivity perspective, an ideal switch should have a high sensitivity to the gate voltage and lower sensitivity to the device design parameters like oxide and body thicknesses. In this work, conventional tunnel-FET (TFET) and negative capacitance FET are shown to suffer from high sensitivity to device design parameters using full-band atomistic quantum transport simulations and analytical analysis. Although Dielectric Engineered (DE-) TFETs based on 2D materials show smaller sensitivity compared with the conventional TFETs, they have leakage issue. To mitigate this challenge, a novel DE-TFET design has been proposed and studied.

Trait-based Modeling Reveals How Plankton Biodiversity-Ecosystem Function (BEF) Relationships Depend on Environmental Variability

NASA Astrophysics Data System (ADS)

Smith, S. L.; Chen, B.; Vallina, S. M.

2017-12-01

Biodiversity-Ecosystem Function (BEF) relationships, which are most commonly quantified in terms of productivity or total biomass yield, are known to depend on the timescale of the experiment or field study, both for terrestrial plants and phytoplankton, which have each been widely studied as model ecosystems. Although many BEF relationships are positive (i.e., increasing biodiversity enhances function), in some cases there is an optimal intermediate diversity level (i.e., a uni-modal relationship), and in other cases productivity decreases with certain measures of biodiversity. These differences in BEF relationships cannot be reconciled merely by differences in the timescale of experiments. We will present results from simulation experiments applying recently developed trait-based models of phytoplankton communities and ecosystems, using the `adaptive dynamics' framework to represent continuous distributions of size and other key functional traits. Controlled simulation experiments were conducted with different levels of phytoplankton size-diversity, which through trait-size correlations implicitly represents functional-diversity. One recent study applied a theoretical box model for idealized simulations at different frequencies of disturbance. This revealed how the shapes of BEF relationships depend systematically on the frequency of disturbance and associated nutrient supply. We will also present more recent results obtained using a trait-based plankton ecosystem model embedded in a three-dimensional ocean model applied to the North Pacific. This reveals essentially the same pattern in a spatially explicit model with more realistic environmental forcing. In the relatively more variable subarctic, productivity tends to increase with the size (and hence functional) diversity of phytoplankton, whereas productivity tends to decrease slightly with increasing size-diversity in the relatively calm subtropics. Continuous trait-based models can capture essential features of BEF relationships, while requiring far fewer calculations compared to typical plankton diversity models that explicitly simulate a great many idealized species.

Effects of large deep-seated landslides on hillslope morphology, western Southern Alps, New Zealand

NASA Astrophysics Data System (ADS)

Korup, Oliver

2006-03-01

Morphometric analysis and air photo interpretation highlight geomorphic imprints of large landslides (i.e., affecting ≥1 km2) on hillslopes in the western Southern Alps (WSA), New Zealand. Large landslides attain kilometer-scale runout, affect >50% of total basin relief, and in 70% are slope clearing, and thus relief limiting. Landslide terrain shows lower mean local relief, relief variability, slope angles, steepness, and concavity than surrounding terrain. Measuring mean slope angle smoothes out local landslide morphology, masking any relationship between large landslides and possible threshold hillslopes. Large failures also occurred on low-gradient slopes, indicating persistent low-frequency/high-magnitude hillslope adjustment independent of fluvial bedrock incision. At the basin and hillslope scale, slope-area plots partly constrain the effects of landslides on geomorphic process regimes. Landslide imprints gradually blend with relief characteristics at orogen scale (102 km), while being sensitive to length scales of slope failure, topography, sampling, and digital elevation model resolution. This limits means of automated detection, and underlines the importance of local morphologic contrasts for detecting large landslides in the WSA. Landslide controls on low-order drainage include divide lowering and shifting, formation of headwater basins and hanging valleys, and stream piracy. Volumes typically mobilized, yet still stored in numerous deposits despite high denudation rates, are >107 m3, and theoretically equal to 102 years of basin-wide debris production from historic shallow landslides; lack of absolute ages precludes further estimates. Deposit size and mature forest cover indicate residence times of 101-104 years. On these timescales, large landslides require further attention in landscape evolution models of tectonically active orogens.

Progenitor-dependent Explosion Dynamics in Self-consistent, Axisymmetric Simulations of Neutrino-driven Core-collapse Supernovae

NASA Astrophysics Data System (ADS)

Summa, Alexander; Hanke, Florian; Janka, Hans-Thomas; Melson, Tobias; Marek, Andreas; Müller, Bernhard

2016-07-01

We present self-consistent, axisymmetric core-collapse supernova simulations performed with the Prometheus-Vertex code for 18 pre-supernova models in the range of 11-28 M ⊙, including progenitors recently investigated by other groups. All models develop explosions, but depending on the progenitor structure, they can be divided into two classes. With a steep density decline at the Si/Si-O interface, the arrival of this interface at the shock front leads to a sudden drop of the mass-accretion rate, triggering a rapid approach to explosion. With a more gradually decreasing accretion rate, it takes longer for the neutrino heating to overcome the accretion ram pressure and explosions set in later. Early explosions are facilitated by high mass-accretion rates after bounce and correspondingly high neutrino luminosities combined with a pronounced drop of the accretion rate and ram pressure at the Si/Si-O interface. Because of rapidly shrinking neutron star radii and receding shock fronts after the passage through their maxima, our models exhibit short advection timescales, which favor the efficient growth of the standing accretion-shock instability. The latter plays a supportive role at least for the initiation of the re-expansion of the stalled shock before runaway. Taking into account the effects of turbulent pressure in the gain layer, we derive a generalized condition for the critical neutrino luminosity that captures the explosion behavior of all models very well. We validate the robustness of our findings by testing the influence of stochasticity, numerical resolution, and approximations in some aspects of the microphysics.

PROGENITOR-DEPENDENT EXPLOSION DYNAMICS IN SELF-CONSISTENT, AXISYMMETRIC SIMULATIONS OF NEUTRINO-DRIVEN CORE-COLLAPSE SUPERNOVAE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Summa, Alexander; Hanke, Florian; Janka, Hans-Thomas

We present self-consistent, axisymmetric core-collapse supernova simulations performed with the Prometheus-Vertex code for 18 pre-supernova models in the range of 11–28 M {sub ⊙}, including progenitors recently investigated by other groups. All models develop explosions, but depending on the progenitor structure, they can be divided into two classes. With a steep density decline at the Si/Si–O interface, the arrival of this interface at the shock front leads to a sudden drop of the mass-accretion rate, triggering a rapid approach to explosion. With a more gradually decreasing accretion rate, it takes longer for the neutrino heating to overcome the accretion rammore » pressure and explosions set in later. Early explosions are facilitated by high mass-accretion rates after bounce and correspondingly high neutrino luminosities combined with a pronounced drop of the accretion rate and ram pressure at the Si/Si–O interface. Because of rapidly shrinking neutron star radii and receding shock fronts after the passage through their maxima, our models exhibit short advection timescales, which favor the efficient growth of the standing accretion-shock instability. The latter plays a supportive role at least for the initiation of the re-expansion of the stalled shock before runaway. Taking into account the effects of turbulent pressure in the gain layer, we derive a generalized condition for the critical neutrino luminosity that captures the explosion behavior of all models very well. We validate the robustness of our findings by testing the influence of stochasticity, numerical resolution, and approximations in some aspects of the microphysics.« less

A decade of volcanic construction and destruction at the summit of NW Rota-1 seamount: 2004-2014

NASA Astrophysics Data System (ADS)

Schnur, Susan R.; Chadwick, William W.; Embley, Robert W.; Ferrini, Vicki L.; de Ronde, Cornel E. J.; Cashman, Katharine V.; Deardorff, Nicholas D.; Merle, Susan G.; Dziak, Robert P.; Haxel, Joe H.; Matsumoto, Haru

2017-03-01

Arc volcanoes are important to our understanding of submarine volcanism because at some sites frequent eruptions cause them to grow and collapse on human timescales. This makes it possible to document volcanic processes. Active submarine eruptions have been observed at the summit of NW Rota-1 in the Mariana Arc. We use remotely operated vehicle videography and repeat high-resolution bathymetric surveys to construct geologic maps of the summit of NW Rota-1 in 2009 and 2010 and relate them to the geologic evolution of the summit area over a 10 year period (2004-2014). We find that 2009 and 2010 were characterized by different eruptive styles, which affected the type and distribution of eruptive deposits at the summit. Year 2009 was characterized by ultraslow extrusion and autobrecciation of lava at a single eruptive vent, producing a large cone of blocky lava debris. In 2010, higher-energy explosive eruptions occurred at multiple closely spaced vents, producing a thin blanket of pebble-sized tephra overlying lava flow outcrops. A landslide that occurred between 2009 and 2010 had a major effect on lithofacies distribution by removing the debris cone and other unconsolidated deposits, revealing steep massive flow cliffs. This relatively rapid alternation between construction and destruction forms one end of a seamount growth and mass wasting spectrum. Intraplate seamounts, which tend to grow larger than arc volcanoes, experience collapse events that are orders of magnitude larger and much less frequent than those occurring at subduction zone settings. Our results highlight the interrelated cyclicity of eruptive activity and mass wasting at submarine arc volcanoes.

Very Large Array Multiband Monitoring Observations of M31*

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yang, Yang; Li, Zhiyuan; Sjouwerman, Loránt O.

The Andromeda galaxy (M31) hosts one of the nearest and most quiescent supermassive black holes, which provides a rare, but promising opportunity for studying the physics of black hole accretion at the lowest state. We have conducted a multifrequency, multi-epoch observing campaign, using the Karl G. Jansky Very Large Array (VLA) in its extended configurations in 2011–2012, to advance our knowledge of the still poorly known radio properties of M31*. For the first time, we detect M31* at 10, 15, and 20 GHz and measure its spectral index, α ≈ −0.45 ± 0.08 (S{sub ν} ∝ ν {sup α}), overmore » the frequency range of 5–20 GHz. The relatively steep spectrum suggests that the observed radio flux is dominated by the optically thin part of a putative jet, which is located at no more than a few thousand Schwarzschild radii from the black hole. On the other hand, our sensitive radio images show little evidence for an extended component, perhaps except for several parsec-scale “plumes,” the nature of which remains unclear. Our data also reveal significant (a few tens of percent) flux variation of M31* at 6 GHz, on timescales of hours to days. Furthermore, a curious decrease of the mean flux density, by ∼50%, is found between VLA observations taken during 2002–2005 and our new observations, which might be associated with a substantial increase in the mean X-ray flux of M31* starting in 2006.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antonini, Fabio, E-mail: antonini@cita.utoronto.ca

We use N-body simulations as well as analytical techniques to study the long-term dynamical evolution of stellar black holes (BHs) at the Galactic center (GC) and to put constraints on their number and mass distribution. Starting from models that have not yet achieved a state of collisional equilibrium, we find that timescales associated with cusp regrowth can be longer than the Hubble time. Our results cast doubts on standard models that postulate high densities of BHs near the GC and motivate studies that start from initial conditions that correspond to well-defined physical models. For the first time, we consider themore » distribution of BHs in a dissipationless model for the formation of the Milky Way nuclear cluster (NC), in which massive stellar clusters merge to form a compact nucleus. We simulate the consecutive merger of ∼10 clusters containing an inner dense sub-cluster of BHs. After the formed NC is evolved for ∼5 Gyr, the BHs do form a steep central cusp, while the stellar distribution maintains properties that resemble those of the GC NC. Finally, we investigate the effect of BH perturbations on the motion of the GC S-stars as a means of constraining the number of the perturbers. We find that reproducing the quasi-thermal character of the S-star orbital eccentricities requires ≳ 1000 BHs within 0.1 pc of Sgr A*. A dissipationless formation scenario for the GC NC is consistent with this lower limit and therefore could reconcile the need for high central densities of BHs (to explain the S-stars orbits) with the 'missing-cusp' problem of the GC giant star population.« less

Discovery of large conical stromatolites in Lake Untersee, Antarctica.

PubMed

Andersen, D T; Sumner, D Y; Hawes, I; Webster-Brown, J; McKay, C P

2011-05-01

Lake Untersee is one of the largest (11.4 km(2)) and deepest (>160 m) freshwater lakes in East Antarctica. Located at 71°S the lake has a perennial ice cover, a water column that, with the exception of a small anoxic basin in the southwest of the lake, is well mixed, supersaturated with dissolved oxygen, alkaline (pH 10.4) and exceedingly clear. The floor of the lake is covered with photosynthetic microbial mats to depths of at least 100 m. These mats are primarily composed of filamentous cyanophytes and form two distinct macroscopic structures, one of which--cm-scale cuspate pinnacles dominated by Leptolyngbya spp.--is common in Antarctica, but the second--laminated, conical stromatolites that rise up to 0.5 m above the lake floor, dominated by Phormidium spp.--has not previously been reported in any modern environment. The laminae that form the conical stromatolites are 0.2-0.8 mm in thickness consisting of fine clays and organic material; carbon dating implies that laminations may occur on near decadal timescales. The uniformly steep sides (59.6 ± 2.5°) and the regular laminar structure of the cones suggest that they may provide a modern analog for growth of some of the oldest well-described Archean stromatolites. Mechanisms underlying the formation of these stromatolites are as yet unclear, but their growth is distinct from that of the cuspate pinnacles. The sympatric occurrence of pinnacles and cones related to microbial communities with distinct cyanobacterial compositions suggest that specific microbial behaviors underpin the morphological differences in the structures. © 2011 Blackwell Publishing Ltd.

Erosion and channel changes due to extreme flooding in the Fourmile Creek catchment, Colorado

NASA Astrophysics Data System (ADS)

Wicherski, Will; Dethier, David P.; Ouimet, William B.

2017-10-01

Infrequent, large magnitude geomorphic events generate quantifiable change on geologically short timescales and are crucial to understanding landscape evolution. Airborne lidar surveys and field measurements were used to investigate floodplain erosion and deposition along a 19.5 km reach of Fourmile Creek, Colorado that was devastated by severe flooding in 2013 that followed a 2010 wildfire. > 350 mm of rain fell on the Fourmile catchment from September 9-15, 2013, generating discharge that exceeded bankfull for > 120 h at the Orodell gage, with local unit stream power > 300 W m- 2 throughout the study reach. Debris flows occurred on steep hillslopes and tributary channels in the most intensely burned areas. Lidar difference measurements and field studies highlight zones of local deposition along the study reach, but demonstrate overall net erosion of 0.25 m for the 19.5 km reach of Fourmile floodplain, mainly by channel widening. Tributary junctions where debris-flow sediment entered the floodplain and local decreases in unit stream power controlled some zones of deposition. Overall, mass balance calculations show that a total sediment loss of 91,000-161,000 m3 from the Fourmile Creek floodplain and hillslopes, which is broadly consistent with channel sediment flux estimates of 71,000-111,000 m3. Measurements from the Fourmile catchment demonstrate that floodplain erosion was a major source of sediment in the 2013 flood and demonstrate that infrequent events marked by long-duration flooding and high total energy expenditure can account for a large fraction of total sediment transport in mountain streams.

ALMA Images of the Host Cloud of the Intermediate-mass Black Hole Candidate CO‑0.40–0.22*: No Evidence for Cloud–Black Hole Interaction, but Evidence for a Cloud–Cloud Collision

NASA Astrophysics Data System (ADS)

Tanaka, Kunihiko

2018-06-01

This paper reports a reanalysis of archival ALMA data of the high velocity(-width) compact cloud CO‑0.40–0.22, which has recently been hypothesized to host an intermediate-mass black hole (IMBH). If beam-smearing effects, difference in beam sizes among frequency bands, and Doppler shift due to the motion of the Earth are considered accurately, none of the features reported as evidence for an IMBH in previous studies are confirmed in the reanalyzed ALMA images. Instead, through analysis of the position–velocity structure of the HCN J = 3–2 data cube, we have found kinematics typical of a cloud–cloud collision (CCC), namely, two distinct velocity components bridged by broad emission features with elevated temperatures and/or densities. One velocity component has a straight filamentary shape with approximately constant centroid velocities along its length but with a steep, V-shaped velocity gradient across its width. This contradicts the IMBH scenario but is consistent with a collision between two dissimilar-sized clouds. From a non-LTE analysis of the multitransition methanol lines, the volume density of the post-shock gas has been measured to be ≳106 cm‑3, indicating that the CCC shock can compress gas in a short timescale to densities typical of star-forming regions. Evidence for star formation has not been found, possibly because the cloud is in an early phase of CCC-triggered star formation or because the collision is nonproductive.

The near steady state landscape of western Namibia

NASA Astrophysics Data System (ADS)

Matmon, A.; Enzel, Y.; Vainer, S.; Grodek, T.; Mushkin, A.; Aster Team

2018-07-01

Quantitative geomorphic field studies and modeling efforts have focused on the margins of southwestern Africa as an example for landscape evolution in prolonged aridity conditions and tectonic quiescence of passive margins. These efforts concluded that this region is a prime example of a steady state landscape, in which relief changes extremely slowly. Using cosmogenic isotopes, these studies suggested overall landscape exhumation rates of 5-10 m Ma-1 over the past 105-106 yrs. Slightly slower rates on flat-lying exposed bedrock surfaces and faster exhumation rates along the Namibian Great Escarpment as well as on steep slopes of granitic inselbergs, such as the Gross Spitzkoppe are also documented. Here we explore the state of "steady state" in central Namibia. Concentrations of 10Be were measured in bedrock and sediment samples collected throughout the watershed of the Ugab River ( 29,000 km2), which drains the highlands of central Namibia and flows to the Atlantic Ocean. Samples were collected from the main stem of the ephemeral Ugab River, from the slopes and streams draining the Brandberg, which is the largest inselberg in the Namib, and from smaller inselbergs around it. We also sampled several other formerly large, but currently subdued, inselbergs such as the Messum Crater. 10Be concentrations in sediment transported along the axial Ugab River indicate that its drainage basin erodes uniformly at 5-6 m Ma-1 and sediment transport from its headwaters source to the ocean is rapid. 10Be concentrations measured in sediment transported in ephemeral streams draining the Brandberg indicate its erosion at 4 m Ma-1. However, slower rates of 1-3 m Ma-1 were measured for bedrock samples collected from (a) flat lying bedrock surfaces within the Brandberg, (b) top of small tors that rise only a few meters above their surroundings, and (c) exhumed and denuded large magmatic complexes such as the Messum Crater. Furthermore, we found that bedrock buried under grus in the hyperarid zone of Namib (<100 mm yr-1) erodes at similar rates as the exposed bedrock. This difference between the rate of bedrock erosion and the overall average erosion rate of drainage basins has been previously attributed to the contribution of sediment weathered from underneath transported sediment and soil on the pediments. Our results do not fully support this explanation. Results from this and earlier studies point to two possible sources of relatively low dosed (i.e. more rapidly eroding) sediment: (a) the steep slopes and cliffs of the large inselbergs and the Great Escarpment, and (b) rock buried under soil in the upper, semi-arid, parts of the drainage systems, where soil and vegetation can promote weathering of plagioclase and biotite and the disintegration of granitic bedrock. We therefore suggest that the "steady state" landscape along the Namibian passive margin be viewed as follows: The entire landscape erodes slowly, generally at 5 m Ma-1 and this maintains the view of steady state. Small differences in erosion rates between the landscape elements result in very slow and only small changes in relief over time scales ≥106 yrs. We find that the large inselbergs and the Great Escarpment erode primarily by retreat of steep slopes and cliffs within the drainage basins while preserving relief over considerable timescales. In the wetter upper reaches of the Namibian drainage systems, erosion of buried rock is most likely increased by the vegetation-covered soil.

Intrinsic disorder as a generalizable strategy for the rational design of highly responsive, allosterically cooperative receptors.

PubMed

Simon, Anna J; Vallée-Bélisle, Alexis; Ricci, Francesco; Plaxco, Kevin W

2014-10-21

Control over the sensitivity with which biomolecular receptors respond to small changes in the concentration of their target ligand is critical for the proper function of many cellular processes. Such control could likewise be of utility in artificial biotechnologies, such as biosensors, genetic logic gates, and "smart" materials, in which highly responsive behavior is of value. In nature, the control of molecular responsiveness is often achieved using "Hill-type" cooperativity, a mechanism in which sequential binding events on a multivalent receptor are coupled such that the first enhances the affinity of the next, producing a steep, higher-order dependence on target concentration. Here, we use an intrinsic-disorder-based mechanism that can be implemented without requiring detailed structural knowledge to rationally introduce this potentially useful property into several normally noncooperative biomolecules. To do so, we fabricate a tandem repeat of the receptor that is destabilized (unfolded) via the introduction of a long, unstructured loop. The first binding event requires the energetically unfavorable closing of this loop, reducing its affinity relative to that of the second binding event, which, in contrast occurs at a preformed site. Using this approach, we have rationally introduced cooperativity into three unrelated DNA aptamers, achieving in the best of these a Hill coefficient experimentally indistinguishable from the theoretically expected maximum. The extent of cooperativity and thus the steepness of the binding transition are, moreover, well modeled as simple functions of the energetic cost of binding-induced folding, speaking to the quantitative nature of this design strategy.

Denitrification-Efficiencies of Alternate Carbon Sources

DTIC Science & Technology

1984-07-01

carbon source evaluated, while sweet whey, corn steep liquor , acid whey and soluble potato solids followed in order of decreasing efficiency. Three of...denitrification and total organic carbon removal with ’I. sweet whey 11 3. Percent denitrification and total organic carbon removal with corn steep liquor ...and total organic carbon removal with hydrolyzed sludge 18 10. Percent denitrification and total organic carbon removal with fish stick 19 11

Application of Remotely Piloted Vehicle (RPV) in monitoring and detecting watershed land use change and problem areas

Treesearch

Long-Ming Huang

2000-01-01

Improper cultivation of steep mountainous areas in Taiwan contributes to serious erosion and landslides. Regular patrol, detection, and administration of these problem areas has been an extremely difficult due to the steep and dangerous terrain of many of the forested watersheds in Taiwan. A remotely piloted vehicle (RPV) has been developed for various civil and...

On which timescales do gas transfer velocities control North Atlantic CO2 flux variability?

NASA Astrophysics Data System (ADS)

Couldrey, Matthew; Oliver, Kevin; Yool, Andrew; Halloran, Paul; Achterberg, Eric

2016-04-01

The North Atlantic is an important basin for the global ocean's uptake of anthropogenic and natural carbon dioxide (CO2), but the mechanisms controlling this carbon flux are not fully understood. The air-sea flux of CO2, F, is the product of a gas transfer velocity, k, the air-sea CO2concentration gradient, ΔpCO2, and the temperature and salinity-dependent solubility coefficient, α. k is difficult to constrain, representing the dominant uncertainty in F on short (instantaneous to interannual) timescales. Previous work shows that in the North Atlantic, ΔpCO2and k both contribute significantly to interannual F variability, but that k is unimportant for multidecadal variability. On some timescale between interannual and multidecadal, gas transfer velocity variability and its associated uncertainty become negligible. Here, we quantify this critical timescale for the first time. Using an ocean model, we determine the importance of k, ΔpCO2and α on a range of timescales. On interannual and shorter timescales, both ΔpCO2and k are important controls on F. In contrast, pentadal to multidecadal North Atlantic flux variability is driven almost entirely by ΔpCO2; k contributes less than 25%. Finally, we explore how accurately one can estimate North Atlantic F without a knowledge of non-seasonal k variability, finding it possible for interannual and longer timescales. These findings suggest that continued efforts to better constrain gas transfer velocities are necessary to quantify interannual variability in the North Atlantic carbon sink. However, uncertainty in k variability is unlikely to limit the accuracy of estimates of longer term flux variability.

On which timescales do gas transfer velocities control North Atlantic CO2 flux variability?

NASA Astrophysics Data System (ADS)

Couldrey, Matthew P.; Oliver, Kevin I. C.; Yool, Andrew; Halloran, Paul R.; Achterberg, Eric P.

2016-05-01

The North Atlantic is an important basin for the global ocean's uptake of anthropogenic and natural carbon dioxide (CO2), but the mechanisms controlling this carbon flux are not fully understood. The air-sea flux of CO2, F, is the product of a gas transfer velocity, k, the air-sea CO2 concentration gradient, ΔpCO2, and the temperature- and salinity-dependent solubility coefficient, α. k is difficult to constrain, representing the dominant uncertainty in F on short (instantaneous to interannual) timescales. Previous work shows that in the North Atlantic, ΔpCO2 and k both contribute significantly to interannual F variability but that k is unimportant for multidecadal variability. On some timescale between interannual and multidecadal, gas transfer velocity variability and its associated uncertainty become negligible. Here we quantify this critical timescale for the first time. Using an ocean model, we determine the importance of k, ΔpCO2, and α on a range of timescales. On interannual and shorter timescales, both ΔpCO2 and k are important controls on F. In contrast, pentadal to multidecadal North Atlantic flux variability is driven almost entirely by ΔpCO2; k contributes less than 25%. Finally, we explore how accurately one can estimate North Atlantic F without a knowledge of nonseasonal k variability, finding it possible for interannual and longer timescales. These findings suggest that continued efforts to better constrain gas transfer velocities are necessary to quantify interannual variability in the North Atlantic carbon sink. However, uncertainty in k variability is unlikely to limit the accuracy of estimates of longer-term flux variability.

On which timescales do gas transfer velocities control North Atlantic CO2 flux variability?

NASA Astrophysics Data System (ADS)

Couldrey, M.; Oliver, K. I. C.; Yool, A.; Halloran, P. R.; Achterberg, E. P.

2016-02-01

The North Atlantic is an important basin for the global ocean's uptake of anthropogenic and natural carbon dioxide (CO2), but the mechanisms controlling this carbon flux are not fully understood. The air-sea flux of CO2, F, is the product of a gas transfer velocity, k, the air-sea CO2 concentration gradient, ΔpCO2, and the temperature and salinity-dependent solubility coefficient, α. k is difficult to constrain, representing the dominant uncertainty in F on short (instantaneous to interannual) timescales. Previous work shows that in the North Atlantic, ΔpCO2 and k both contribute significantly to interannual F variability, but that k is unimportant for multidecadal variability. On some timescale between interannual and multidecadal, gas transfer velocity variability and its associated uncertainty become negligible. Here, we quantify this critical timescale for the first time. Using an ocean model, we determine the importance of k, ΔpCO2 and α on a range of timescales. On interannual and shorter timescales, both ΔpCO2 and k are important controls on F. In contrast, pentadal to multidecadal North Atlantic flux variability is driven almost entirely by ΔpCO2; k contributes less than 25%. Finally, we explore how accurately one can estimate North Atlantic F without a knowledge of non-seasonal k variability, finding it possible for interannual and longer timescales. These findings suggest that continued efforts to better constrain gas transfer velocities are necessary to quantify interannual variability in the North Atlantic carbon sink. However, uncertainty in k variability is unlikely to limit the accuracy of estimates of longer term flux variability.

Collective dynamic dipole moment and orientation fluctuations, cooperative hydrogen bond relaxations, and their connections to dielectric relaxation in ionic acetamide deep eutectics: Microscopic insight from simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Das, Suman; Biswas, Ranjit, E-mail: ranjit@bose.res.in, E-mail: biswaroop.mukherjee@gmail.com; Thematic Unit for Excellence – Computational Materials Science, S. N. Bose National Centre for Basic Sciences, Block-JD, Sector-III, Salt Lake, Kolkata 700098

The paper reports a detailed simulation study on collective reorientational relaxation, cooperative hydrogen bond (H-bond) fluctuations, and their connections to dielectric relaxation (DR) in deep eutectic solvents made of acetamide and three uni-univalent electrolytes, lithium nitrate (LiNO{sub 3}), lithium bromide (LiBr), and lithium perchlorate (LiClO{sub 4}). Because cooperative H-bond fluctuations and ion migration complicate the straightforward interpretation of measured DR timescales in terms of molecular dipolar rotations for these conducting media which support extensive intra- and inter-species H-bonding, one needs to separate out the individual components from the overall relaxation for examining the microscopic origin of various timescales. The presentmore » study does so and finds that reorientation of ion-complexed acetamide molecules generates relaxation timescales that are in sub-nanosecond to nanosecond range. This explains in molecular terms the nanosecond timescales reported by recent giga-Hertz DR measurements. Interestingly, the simulated survival timescale for the acetamide-Li{sup +} complex has been found to be a few tens of nanosecond, suggesting such a cation-complexed species may be responsible for a similar timescale reported by mega-Hertz DR measurements of acetamide/potassium thiocyanate deep eutectics near room temperature. The issue of collective versus single particle relaxation is discussed, and jump waiting time distributions are determined. Dependence on anion-identity in each of the cases has been examined. In short, the present study demonstrates that assumption of nano-sized domain formation is not required for explaining the DR detected nanosecond and longer timescales in these media.« less

Statistical link between external climate forcings and modes of ocean variability

NASA Astrophysics Data System (ADS)

Malik, Abdul; Brönnimann, Stefan; Perona, Paolo

2017-07-01

In this study we investigate statistical link between external climate forcings and modes of ocean variability on inter-annual (3-year) to centennial (100-year) timescales using de-trended semi-partial-cross-correlation analysis technique. To investigate this link we employ observations (AD 1854-1999), climate proxies (AD 1600-1999), and coupled Atmosphere-Ocean-Chemistry Climate Model simulations with SOCOL-MPIOM (AD 1600-1999). We find robust statistical evidence that Atlantic multi-decadal oscillation (AMO) has intrinsic positive correlation with solar activity in all datasets employed. The strength of the relationship between AMO and solar activity is modulated by volcanic eruptions and complex interaction among modes of ocean variability. The observational dataset reveals that El Niño southern oscillation (ENSO) has statistically significant negative intrinsic correlation with solar activity on decadal to multi-decadal timescales (16-27-year) whereas there is no evidence of a link on a typical ENSO timescale (2-7-year). In the observational dataset, the volcanic eruptions do not have a link with AMO on a typical AMO timescale (55-80-year) however the long-term datasets (proxies and SOCOL-MPIOM output) show that volcanic eruptions have intrinsic negative correlation with AMO on inter-annual to multi-decadal timescales. The Pacific decadal oscillation has no link with solar activity, however, it has positive intrinsic correlation with volcanic eruptions on multi-decadal timescales (47-54-year) in reconstruction and decadal to multi-decadal timescales (16-32-year) in climate model simulations. We also find evidence of a link between volcanic eruptions and ENSO, however, the sign of relationship is not consistent between observations/proxies and climate model simulations.

The Arctic Predictability and Prediction on Seasonal-to-Interannual TimEscales (APPOSITE) data set version 1

NASA Astrophysics Data System (ADS)

Day, Jonathan J.; Tietsche, Steffen; Collins, Mat; Goessling, Helge F.; Guemas, Virginie; Guillory, Anabelle; Hurlin, William J.; Ishii, Masayoshi; Keeley, Sarah P. E.; Matei, Daniela; Msadek, Rym; Sigmond, Michael; Tatebe, Hiroaki; Hawkins, Ed

2016-06-01

Recent decades have seen significant developments in climate prediction capabilities at seasonal-to-interannual timescales. However, until recently the potential of such systems to predict Arctic climate had rarely been assessed. This paper describes a multi-model predictability experiment which was run as part of the Arctic Predictability and Prediction On Seasonal to Interannual Timescales (APPOSITE) project. The main goal of APPOSITE was to quantify the timescales on which Arctic climate is predictable. In order to achieve this, a coordinated set of idealised initial-value predictability experiments, with seven general circulation models, was conducted. This was the first model intercomparison project designed to quantify the predictability of Arctic climate on seasonal to interannual timescales. Here we present a description of the archived data set (which is available at the British Atmospheric Data Centre), an assessment of Arctic sea ice extent and volume predictability estimates in these models, and an investigation into to what extent predictability is dependent on the initial state. The inclusion of additional models expands the range of sea ice volume and extent predictability estimates, demonstrating that there is model diversity in the potential to make seasonal-to-interannual timescale predictions. We also investigate whether sea ice forecasts started from extreme high and low sea ice initial states exhibit higher levels of potential predictability than forecasts started from close to the models' mean state, and find that the result depends on the metric. Although designed to address Arctic predictability, we describe the archived data here so that others can use this data set to assess the predictability of other regions and modes of climate variability on these timescales, such as the El Niño-Southern Oscillation.

Young Surface of Pluto’s Sputnik Planitia Caused by Viscous Relaxation

NASA Astrophysics Data System (ADS)

Wei, Qiang; Hu, Yongyun; Liu, Yonggang; Lin, Douglas N. C.; Yang, Jun; Showman, Adam P.

2018-03-01

One of the most prominent features of Pluto observed by the New Horizon mission is the absence of craters on Sputnik Planitia (SP). Vigorous thermal convection could renew the SP surface with sufficient depth at a timescale of ∼500,000 years. Here we present numerical simulations demonstrating that craters can be removed much more quickly across all of SP by viscous relaxation of nitrogen (N2) ice. The timescale of relaxation is in years if the N2 layer is 4 km thick and the viscosity is as determined in the lab, and will increase to 104 years if the viscosity is 104 times larger than the measured value. For such high viscosity, the thermal convection will have a timescale of greater than 106 years if it happens at all, so that the relaxation timescale is still more than 2 orders of magnitude shorter. The relaxation timescale decreases with increasing thickness and temperature of the ice layer. The existence of pits on SP can be explained by the surface enhancement of viscosity. Such enhancement does not have significant influence on the relaxation timescale of craters with diameters greater than a few kilometers. Therefore, although convection is required to explain the polygon shapes, it may have a lesser role in the absence of craters on SP. The viscous relaxation mechanism can readily explain the nondetection of both craters and polygon shapes on the southeast SP.

New quasar survey with WIRO: The light curves of quasars over ~15 year timescales

NASA Astrophysics Data System (ADS)

Griffith, Emily; Bassett, Neil; Deam, Sophie; Dixon, Don; Harvey, William; Lee, Daniel; Lyke, Bradley; Haze Nunez, Evan; Parziale, Ryan; Witherspoon, Catherine; Myers, Adam D.; Findlay, Joseph; Kobulnicky, Henry A.; Dale, Daniel A.

2017-01-01

Quasars, a type of active galactic nuclei (AGN), are known to vary in brightness on 10 day to 7 year timescales. While it has been proposed that this variability is caused by instability in the accretion disk, Poisson processes, or microlensing, the exact cause remains mysterious. Understanding the physical mechanisms that drive quasar variability will require imaging of quasars over a wide range of timescales. In particular, the observations required to constrain longer timescales can be difficult to conduct. This summer ~1000 quasars in Stripe 82 were observed in ugriz wavelength bands using WIRO, the University of Wyoming’s 2.3-meter telescope. Using these images, earlier data from the Sloan Digital Sky Survey's observations of Stripe 82, as well as various data reduction methods, the quasars’ magnitude can be studied on our extended 3 day to 15 year timescale. Here, we present the light curves of ~1000 quasars in ugriz bands as observed over the last 15 years. Thiswork is supported by the National Science Foundation under REU grant AST 1560461.

Metal Accretion onto White Dwarfs. I. The Approximate Approach Based on Estimates of Diffusion Timescales

NASA Astrophysics Data System (ADS)

Fontaine, G.; Brassard, P.; Dufour, P.; Tremblay, P.-E.

2015-06-01

The accretion-diffusion picture is the model par excellence for describing the presence of planetary debris polluting the atmospheres of relatively cool white dwarfs. Some important insights into the process may be derived using an approximate approach which combines static stellar models with estimates of diffusion timescales at the base of the outer convection zone or, in its absence, at the photosphere. Until recently, and to our knowledge, values of diffusion timescales in white dwarfs have all been obtained on the basis of the same physics as that developed initially by Paquette et al., including their diffusion coefficients and thermal diffusion coefficients. In view of the recent exciting discoveries of a plethora of metals (including some never seen before) polluting the atmospheres of an increasing number of cool white dwarfs, we felt that a new look at the estimates of settling timescales would be worthwhile. We thus provide improved estimates of diffusion timescales for all 27 elements from Li to Cu in the periodic table in a wide range of the surface gravity-effective temperature domain and for both DA and non-DA stars.

Using biological markets principles to examine patterns of grooming exchange in Macaca thibetana.

PubMed

Balasubramaniam, K N; Berman, C M; Ogawa, H; Li, J

2011-12-01

Biological markets principles offer testable hypotheses to explain variation in grooming exchange patterns among nonhuman primates. They predict that when within-group contest competition (WGC) is high and dominance hierarchies steep, grooming interchange with other "commodity" behaviors (such as agonistic support) should prevail. In contrast, when WGC is low and gradients shallow, market theory predicts that grooming reciprocity should prevail. We tested these predictions in a wild, provisioned Tibetan macaque (Macaca thibetana) group across six time periods during which the group had been subjected to varying degrees of range restriction. Data on female-female aggression, grooming, and support were collected using all-occurrences and focal animal sampling techniques, and analyzed using ANCOVA methods and correlation analyses. We found that hierarchical steepness varied significantly across periods, but did not correlate with two indirect indicators of WGC (group size and range restriction) in predicted directions. Contrary to expectations, we found a negative correlation between steepness and group size, perhaps because the responses of group members to external risks (i.e. prolonged and unavoidable exposure to humans) may have overshadowed the effects of WGC. As predicted, grooming reciprocity was significant in each period and negatively correlated with steepness, even after we controlled group size, kinship, rank differences, and proximity. In contrast, there was no evidence for grooming interchange with agonistic support or for a positive relationship between interchange and steepness. We hypothesize that stressful conditions and/or the presence of stable hierarchies during each period may have led to a greater market demand for grooming than support. We suggest that future studies testing these predictions consider more direct measures of WGC and commodities in addition to support, such as feeding tolerance and access to infants. © 2011 Wiley Periodicals, Inc.

[Effects of carbon and nitrogen sources on 5-keto-gluconic acid production].

PubMed

Tan, Zhilei; Wang, Hongcui; Wei, Yuqiao; Li, Yanyan; Zhong, Cheng; Jia, Shiru

2014-01-01

Gluconobacter oxydans is known to oxidize glucose to gluconic acid (GA), and subsequently, to 2-keto-gluconic acid (2KGA) and 5-keto-gluconic acid (5KGA), while 5KGA can be converted to L-(+)-tartaric acid. In order to increase the production of 5KGA, Gluconobacter oxydans HGI-1 that converts GA to 5KGA exclusively was chosen in this study, and effects of carbon sources (lactose, maltose, sucrose, amylum and glucose) and nitrogen sources (yeast extract, fish meal, corn steep liquor, soybean meal and cotton-seed meal) on 5KGA production were investigated. Results of experiment in 500 mL shake-flask show that the highest yield of 5KGA (98.20 g/L) was obtained using 100 g/L glucose as carbon source. 5KGA reached 100.20 g/L, 109.10 g/L, 99.83 g/L with yeast extract, fish meal and corn steep liquor as nitrogen source respectively, among which the optimal nitrogen source was fish meal. The yield of 5KGA by corn steep liquor is slightly lower than that by yeast extract. For the economic reason, corn steep liquor was selected as nitrogen source and scaled up to 5 L stirred-tank fermentor, and the final concentration of 5KGA reached 93.80 g/L, with its maximum volumetric productivity of 3.48 g/(L x h) and average volumetric productivity of 1.56 g/(L x h). The result obtained in this study showed that carbon and nitrogen sourses for large-scale production of 5KGA by Gluconobacter oxydans HGI-1 were glucose and corn steep liquor, respectively, and the available glucose almost completely (85.93%) into 5KGA.

Steepness of Slopes at the Luna-Glob Landing Sites: Estimating by the Shaded Area Percentage in the LROC NAC Images

NASA Astrophysics Data System (ADS)

Krasilnikov, S. S.; Basilevsky, A. T.; Ivanov, M. A.; Abdrakhimov, A. M.; Kokhanov, A. A.

2018-03-01

The paper presents estimates of the occurrence probability of slopes, whose steep surfaces could be dangerous for the landing of the Luna-Glob descent probe ( Luna-25) given the baseline of the span between the landing pads ( 3.5 m), for five potential landing ellipses. As a rule, digital terrain models built from stereo pairs of high-resolution images (here, the images taken by the Narrow Angle Camera onboard the Lunar Reconnaissance Orbiter (LROC NAC)) are used in such cases. However, the planned landing sites are at high latitudes (67°-74° S), which makes it impossible to build digital terrain models, since the difference in the observation angle of the overlapping images is insufficient at these latitudes. Because of this, to estimate the steepness of slopes, we considered the interrelation between the shaded area percentage in the image and the Sun angle over horizon at the moment of imaging. For five proposed landing ellipses, the LROC NAC images (175 images in total) with a resolution from 0.4 to 1.2 m/pixel were analyzed. From the results of the measurements in each of the ellipses, the dependence of the shaded area percentage on the solar angle were built, which was converted to the occurrence probability of slopes. For this, the data on the Apollo 16 landing region ware used, which is covered by both the LROC NAC images and the digital terrain model with high resolution. As a result, the occurrence probability of slopes with different steepness has been estimated on the baseline of 3.5 m for five landing ellipses according to the steepness categories of <7°, 7°-10°, 10°-15°, 15°-20°, and >20°.

Geospatial assessment of tourism impact on land environment of Dehradun, Uttarakhand, India.

PubMed

Dey, Jaydip; Sakhre, Saurabh; Gupta, Vikash; Vijay, Ritesh; Pathak, Sunil; Biniwale, Rajesh; Kumar, Rakesh

2018-03-01

India's tourism industry has emerged as a leading industry with a potential to grow further in the next few decades. Dehradun, one of the famous tourist places in India located in the state of Uttarakhand, attracts tourist from all over the country and abroad. The surge in tourist number paved the way for new infrastructure projects like roads, buildings, and hotels, which in turn affects the topography of the mountainous region. In this study, remote sensing and GIS techniques have been used to assess the impact of tourism on the land environment of Dehradun. Satellite images of the years 1972, 2000, and 2016 were analyzed using object-based image analysis (OBIA) to derive land use and land cover (LULC) and ASTER-DEM (Digital Elevation Model) was used to determine the topography of the study area. LULC classification includes built-up, vegetation, forest, scrub, agriculture, plantation, and water body. The slope of the region was categorized as gentle, moderate, strong, extreme, steep, and very steep. To assess the sprawl of built-up on high terrain land, built-up class of LULC was overlaid on slope classes. The overlay analysis reveals that due to increase in tourism, the land use in terms of the built-up area has been extended from gentle slope to very steep slope. The haphazard construction on the extreme, steep, and very steep slope is prone to landslide and other natural disasters. For this, landslide susceptibility maps have also been generated using multicriteria evaluation (MCE) techniques to prevent haphazard construction and to assist in further planning of Dehradun City. This study suggests that a proper developmental plan of the city is essential which follows the principles of optimum use of land and sustainable tourism.

Cell Blebbing in Confined Microfluidic Environments

PubMed Central

Ibo, Markela; Srivastava, Vasudha; Robinson, Douglas N.; Gagnon, Zachary R.

2016-01-01

Migrating cells can extend their leading edge by forming myosin-driven blebs and F-actin-driven pseudopods. When coerced to migrate in resistive environments, Dictyostelium cells switch from using predominately pseudopods to blebs. Bleb formation has been shown to be chemotactic and can be influenced by the direction of the chemotactic gradient. In this study, we determine the blebbing responses of developed cells of Dictyostelium discoideum to cAMP gradients of varying steepness produced in microfluidic channels with different confining heights, ranging between 1.7 μm and 3.8 μm. We show that microfluidic confinement height, gradient steepness, buffer osmolarity and Myosin II activity are important factors in determining whether cells migrate with blebs or with pseudopods. Dictyostelium cells were observed migrating within the confines of microfluidic gradient channels. When the cAMP gradient steepness is increased from 0.7 nM/μm to 20 nM/μm, cells switch from moving with a mixture of blebs and pseudopods to moving only using blebs when chemotaxing in channels with confinement heights less than 2.4 μm. Furthermore, the size of the blebs increases with gradient steepness and correlates with increases in myosin-II localization at the cell cortex. Reduction of intracellular pressure by high osmolarity buffer or inhibition of myosin-II by blebbistatin leads to a decrease in bleb formation and bleb size. Together, our data reveal that the protrusion type formed by migrating cells can be influenced by the channel height and the steepness of the cAMP gradient, and suggests that a combination of confinement-induced myosin-II localization and cAMP-regulated cortical contraction leads to increased intracellular fluid pressure and bleb formation. PMID:27706201

Bacterial Diversity and Mycotoxin Reduction During Maize Fermentation (Steeping) for Ogi Production

PubMed Central

Okeke, Chiamaka A.; Ezekiel, Chibundu N.; Nwangburuka, Cyril C.; Sulyok, Michael; Ezeamagu, Cajethan O.; Adeleke, Rasheed A.; Dike, Stanley K.; Krska, Rudolf

2015-01-01

Bacterial diversity and community structure of two maize varieties (white and yellow) during fermentation/steeping for ogi production, and the influence of spontaneous fermentation on mycotoxin reduction in the gruel were studied. A total of 142 bacterial isolates obtained at 24–96 h intervals were preliminarily identified by conventional microbiological methods while 60 selected isolates were clustered into 39 OTUs consisting of 15 species, 10 genera, and 3 phyla by 16S rRNA sequence analysis. Lactic acid bacteria constituted about 63% of all isolated bacteria and the genus Pediococcus dominated (white maize = 84.8%; yellow maize = 74.4%). Pediococcus acidilactici and Lactobacillus paraplantarum were found at all steeping intervals of white and yellow maize, respectively, while P. claussenii was present only at the climax stage of steeping white maize. In both maize varieties, P. pentosaceus was found at 24–72 h. Mycotoxin concentrations (μg/kg) in the unsteeped grains were: white maize (aflatoxin B1 = 0.60; citrinin = 85.8; cyclopiazonic acid = 23.5; fumonisins (B1/B2/B3) = 68.4–483; zearalenone = 3.3) and yellow maize (aflatoxins (B1/B2/M1) = 22.7–513; citrinin = 16,800; cyclopiazonic acid = 247; fumonisins (B1/B2/B3) = 252–1,586; zearalenone = 205). Mycotoxins in both maize varieties were significantly (p < 0.05) reduced across steeping periods. This study reports for the first time: (a) the association of L. paraplantarum, P. acidilactici, and P. claussenii with ogi production from maize, (b) citrinin occurrence in Nigerian maize and ogi, and (c) aflatoxin M1, citrinin and cyclopiazonic acid degradation/loss due to fermentation in traditional cereal-based fermented food. PMID:26697001

Evolution of optimal Hill coefficients in nonlinear public goods games.

PubMed

Archetti, Marco; Scheuring, István

2016-10-07

In evolutionary game theory, the effect of public goods like diffusible molecules has been modelled using linear, concave, sigmoid and step functions. The observation that biological systems are often sigmoid input-output functions, as described by the Hill equation, suggests that a sigmoid function is more realistic. The Michaelis-Menten model of enzyme kinetics, however, predicts a concave function, and while mechanistic explanations of sigmoid kinetics exist, we lack an adaptive explanation: what is the evolutionary advantage of a sigmoid benefit function? We analyse public goods games in which the shape of the benefit function can evolve, in order to determine the optimal and evolutionarily stable Hill coefficients. We find that, while the dynamics depends on whether output is controlled at the level of the individual or the population, intermediate or high Hill coefficients often evolve, leading to sigmoid input-output functions that for some parameters are so steep to resemble a step function (an on-off switch). Our results suggest that, even when the shape of the benefit function is unknown, biological public goods should be modelled using a sigmoid or step function rather than a linear or concave function. Copyright © 2016 Elsevier Ltd. All rights reserved.

A Two-Timescale Discretization Scheme for Collocation

NASA Technical Reports Server (NTRS)

Desai, Prasun; Conway, Bruce A.

2004-01-01

The development of a two-timescale discretization scheme for collocation is presented. This scheme allows a larger discretization to be utilized for smoothly varying state variables and a second finer discretization to be utilized for state variables having higher frequency dynamics. As such. the discretization scheme can be tailored to the dynamics of the particular state variables. In so doing. the size of the overall Nonlinear Programming (NLP) problem can be reduced significantly. Two two-timescale discretization architecture schemes are described. Comparison of results between the two-timescale method and conventional collocation show very good agreement. Differences of less than 0.5 percent are observed. Consequently. a significant reduction (by two-thirds) in the number of NLP parameters and iterations required for convergence can be achieved without sacrificing solution accuracy.

Analytical calculation on the determination of steep side wall angles from far field measurements

NASA Astrophysics Data System (ADS)

Cisotto, Luca; Pereira, Silvania F.; Urbach, H. Paul

2018-06-01

In the semiconductor industry, the performance and capabilities of the lithographic process are evaluated by measuring specific structures. These structures are often gratings of which the shape is described by a few parameters such as period, middle critical dimension, height, and side wall angle (SWA). Upon direct measurement or retrieval of these parameters, the determination of the SWA suffers from considerable inaccuracies. Although the scattering effects that steep SWAs have on the illumination can be obtained with rigorous numerical simulations, analytical models constitute a very useful tool to get insights into the problem we are treating. In this paper, we develop an approach based on analytical calculations to describe the scattering of a cliff and a ridge with steep SWAs. We also propose a detection system to determine the SWAs of the structures.

Tunnel field-effect transistor charge-trapping memory with steep subthreshold slope and large memory window

NASA Astrophysics Data System (ADS)

Kino, Hisashi; Fukushima, Takafumi; Tanaka, Tetsu

2018-04-01

Charge-trapping memory requires the increase of bit density per cell and a larger memory window for lower-power operation. A tunnel field-effect transistor (TFET) can achieve to increase the bit density per cell owing to its steep subthreshold slope. In addition, a TFET structure has an asymmetric structure, which is promising for achieving a larger memory window. A TFET with the N-type gate shows a higher electric field between the P-type source and the N-type gate edge than the conventional FET structure. This high electric field enables large amounts of charges to be injected into the charge storage layer. In this study, we fabricated silicon-oxide-nitride-oxide-semiconductor (SONOS) memory devices with the TFET structure and observed a steep subthreshold slope and a larger memory window.

Broad timescale forcing and geomorphic mediation of tidal marsh flow and temperature dynamics

USGS Publications Warehouse

Enwright, Christopher; Culberson, Steven; Burau, Jon R.

2013-01-01

Tidal marsh functions are driven by interactions between tides, landscape morphology, and emergent vegetation. Less often considered are the diurnal pattern of tide extremes and seasonal variation of solar insolation in the mix of tidal marsh driver interactions. This work demonstrates how high-frequency hydroperiod and water temperature variability emerges from disparate timescale interactions between tidal marsh morphology, tidal harmonics, and meteorology in the San Francisco Estuary. We compare the tidal and residual flow and temperature response of neighboring tidal sloughs, one possessing natural tidal marsh morphology, and one that is modified for water control. We show that the natural tidal marsh is tuned to lunar phase and produces tidal and fortnight water temperature variability through interacting tide, meteorology, and geomorphic linkages. In contrast, temperature variability is dampened in the modified slough where overbank marsh plain connection is severed by levees. Despite geomorphic differences, a key finding is that both sloughs are heat sinks in summer by latent heat flux-driven residual upstream water advection and sensible and long-wave heat transfer. The precession of a 335-year tidal harmonic assures that these dynamics will shift in the future. Water temperature regulation appears to be a key function of natural tidal sloughs that depends critically on geomorphic mediation. We investigate approaches to untangling the relative influence of sun versus tide on residual water and temperature transport as a function of system morphology. The findings of this study likely have ecological consequences and suggest physical process metrics for tidal marsh restoration performance.

On the impact of neutron star binaries' natal-kick distribution on the Galactic r-process enrichment

NASA Astrophysics Data System (ADS)

Safarzadeh, Mohammadtaher; Côté, Benoit

2017-11-01

We study the impact of the neutron star binaries' (NSBs) natal-kick distribution on the galactic r-process enrichment. We model the growth of a Milky Way type halo based on N-body simulation results and its star formation history based on multi-epoch abundance matching techniques. We consider that the NSBs that merge well beyond the galaxy's effective radius (>2 × Reff) do not contribute to the galactic r-process enrichment. Assuming a power-law delay-time distribution (DTD) function (∝t-1) with tmin = 30 Myr for binaries' coalescence time-scales and an exponential profile for their natal-kick distribution with an average value of 180 km s-1, we show that up to ˜ 40 per cent of all formed NSBs do not contribute to the r-process enrichment by z = 0, either because they merge far from the galaxy at a given redshift (up to ˜ 25 per cent) or have not yet merged by today (˜ 15 per cent). Our result is largely insensitive to the details of the DTD function. Assuming a constant coalescence time-scale of 100 Myr well approximates the adopted DTD although with 30 per cent of the NSBs ending up not contributing to the r-process enrichment. Our results, although rather dependent on the adopted natal-kick distribution, represent the first step towards estimating the impact of natal kicks and DTD functions on the r-process enrichment of galaxies that would need to be incorporated in the hydrodynamical simulations.

Characterizing RNA Dynamics at Atomic Resolution Using Solution-state NMR Spectroscopy

PubMed Central

Bothe, Jameson R.; Nikolova, Evgenia N.; Eichhorn, Catherine D.; Chugh, Jeetender; Hansen, Alexandar L.; Al-Hashimi, Hashim M.

2012-01-01

Many recently discovered non-coding RNAs do not fold into a single native conformation, but rather, sample many different conformations along their free energy landscape to carry out their biological function. Unprecedented insights into the RNA dynamic structure landscape are provided by solution-state NMR techniques that measure the structural, kinetic, and thermodynamic characteristics of motions spanning picosecond to second timescales at atomic resolution. From these studies a basic description of the RNA dynamic structure landscape is emerging, bringing new insights into how RNA structures change to carry out their function as well as applications in RNA-targeted drug discovery and RNA bioengineering. PMID:22036746

Effects of gravel on infiltration, runoff, and sediment yield in landslide deposit slope in Wenchuan earthquake area, China.

PubMed

Li, Tianyang; He, Binghui; Chen, Zhanpeng; Zhang, Yi; Liang, Chuan; Wang, Renxin

2016-06-01

Amounts of landslide deposits were triggered by the Wenchuan earthquake with magnitude 8.0 on May 12, 2008. The landslide deposits were composed of soil and rock fragments, which play important roles in hydrological and erosion processes in the steep slope of landslide deposits. The mixtures of soil and gravels are common in the top layers of landslide deposits, and its processes are obviously different with the soil without gravels. Based on the data of field investigation, a series of simulated scouring flow experiments with four proportion of gravel (0, 25, 33.3, and 50 %) and three scouring flow rates (4, 8, 12 L/min) under two steep slopes (67.5, 72.7 %) were conducted sequentially to know the effects of proportion of gravel on infiltration capacity, runoff generation, and sediment production in the steep slope of landslide deposit. Results indicated that gravel had promoted or reduced effects on infiltration capacity which could affect further the cumulative runoff volume and cumulative sediment mass increase or decrease. The cumulative infiltration volume in 25 % proportion of gravel was less than those in 0, 33.3, and 50 % proportion of gravel. The cumulative runoff volume was in an order of 25 > 0 > 33.3 > 50 % while cumulative sediment mass ranked as 25 > 33.3 > 0 > 50 % with different proportions of gravel. A significant power relationship was found between scouring time and cumulative runoff volume as well as cumulative sediment mass. The relationship between average soil and water loss rate and proportion of gravel was able to express by quadratic function, with a high degree of reliability. The results have important implications for soil and water conservation and modeling in landslide deposit but also provide useful information for the similar conditions.

Nixtamalized flour from quality protein maize (Zea mays L). optimization of alkaline processing.

PubMed

Milán-Carrillo, J; Gutiérrez-Dorado, R; Cuevas-Rodríguez, E O; Garzón-Tiznado, J A; Reyes-Moreno, C

2004-01-01

Quality of maize proteins is poor, they are deficient in the essential amino acids lysine and tryptophan. Recently, in Mexico were successfully developed nutritionally improved 26 new hybrids and cultivars called quality protein maize (QPM) which contain greater amounts of lysine and tryptophan. Alkaline cooking of maize with lime (nixtamalization) is the first step for producing several maize products (masa, tortillas, flours, snacks). Processors adjust nixtamalization variables based on experience. The objective of this work was to determine the best combination of nixtamalization process variables for producing nixtamalized maize flour (NMF) from QPM V-537 variety. Nixtamalization conditions were selected from factorial combinations of process variables: nixtamalization time (NT, 20-85 min), lime concentration (LC, 3.3-6.7 g Ca(OH)2/l, in distilled water), and steep time (ST, 8-16 hours). Nixtamalization temperature and ratio of grain to cooking medium were 85 degrees C and 1:3 (w/v), respectively. At the end of each cooking treatment the steeping started for the required time. Steeping was finished by draining the cooking liquor (nejayote). Nixtamal (alkaline-cooked maize kernels) was washed with running tap water. Wet nixtamal was dried (24 hours, 55 degrees C) and milled to pass through 80-US mesh screen to obtain NMF. Response surface methodology (RSM) was applied as optimization technique, over four response variables: In vitro protein digestibility (PD), total color difference (deltaE), water absorption index (WAI), and pH. Predictive models for response variables were developed as a function of process variables. Conventional graphical method was applied to obtain maximum PD, WAI and minimum deltaE, pH. Contour plots of each of the response variables were utilized applying superposition surface methodology, to obtain three contour plots for observation and selection of best combination of NT (31 min), LC (5.4 g Ca(OH)2/l), and ST (8.1 hours) for producing optimized NMF from QPM.

Global collocation methods for approximation and the solution of partial differential equations

NASA Technical Reports Server (NTRS)

Solomonoff, A.; Turkel, E.

1986-01-01

Polynomial interpolation methods are applied both to the approximation of functions and to the numerical solutions of hyperbolic and elliptic partial differential equations. The derivative matrix for a general sequence of the collocation points is constructed. The approximate derivative is then found by a matrix times vector multiply. The effects of several factors on the performance of these methods including the effect of different collocation points are then explored. The resolution of the schemes for both smooth functions and functions with steep gradients or discontinuities in some derivative are also studied. The accuracy when the gradients occur both near the center of the region and in the vicinity of the boundary is investigated. The importance of the aliasing limit on the resolution of the approximation is investigated in detail. Also examined is the effect of boundary treatment on the stability and accuracy of the scheme.

Aerobic metabolism underlies complexity and capacity

PubMed Central

Koch, Lauren G; Britton, Steven L

2008-01-01

The evolution of biological complexity beyond single-celled organisms was linked temporally with the development of an oxygen atmosphere. Functionally, this linkage can be attributed to oxygen ranking high in both abundance and electronegativity amongst the stable elements of the universe. That is, reduction of oxygen provides for close to the largest possible transfer of energy for each electron transfer reaction. This suggests the general hypothesis that the steep thermodynamic gradient of an oxygen environment was permissive for the development of multicellular complexity. A corollary of this hypothesis is that aerobic metabolism underwrites complex biological function mechanistically at all levels of organization. The strong contemporary functional association of aerobic metabolism with both physical capacity and health is presumably a product of the integral role of oxygen in our evolutionary history. Here we provide arguments from thermodynamics, evolution, metabolic network analysis, clinical observations and animal models that are in accord with the centrality of oxygen in biology. PMID:17947307

Linkages Between Multiscale Global Sea Surface Temperature Change and Precipitation Variabilities in the US

NASA Technical Reports Server (NTRS)

Lau, K. M.; Weng, Heng-Yi

1999-01-01

A growing number of evidence indicates that there are coherent patterns of variability in sea surface temperature (SST) anomaly not only at interannual timescales, but also at decadal-to-inter-decadal timescale and beyond. The multi-scale variabilities of SST anomaly have shown great impacts on climate. In this work, we analyze multiple timescales contained in the globally averaged SST anomaly with and their possible relationship with the summer and winter rainfall in the United States over the past four decades.

Time-Scale Modification of Complex Acoustic Signals in Noise

DTIC Science & Technology

1994-02-04

of a response from a closing stapler . 15 6 Short-time processing of long waveforms. 16 7 Time-scale expansion (x 2) of sequence of transients using...filter bank/overlap- add. 17 8 Time-scale expansion (x2) of a closing stapler using filter bank/overlap-add. 18 9 Composite subband time-scale...INTRODUCTION Short-duration complex sounds, as from the closing of a stapler or the tapping of a drum stick, often consist of a series of brief