Creation of a Digital Surface Model and Extraction of Coarse Woody Debris from Terrestrial Laser Scans in an Open Eucalypt Woodland

NASA Astrophysics Data System (ADS)

Muir, J.; Phinn, S. R.; Armston, J.; Scarth, P.; Eyre, T.

2014-12-01

Coarse woody debris (CWD) provides important habitat for many species and plays a vital role in nutrient cycling within an ecosystem. In addition, CWD makes an important contribution to forest biomass and fuel loads. Airborne or space based remote sensing instruments typically do not detect CWD beneath the forest canopy. Terrestrial laser scanning (TLS) provides a ground based method for three-dimensional (3-D) reconstruction of surface features and CWD. This research produced a 3-D reconstruction of the ground surface and automatically classified coarse woody debris from registered TLS scans. The outputs will be used to inform the development of a site-based index for the assessment of forest condition, and quantitative assessments of biomass and fuel loads. A survey grade terrestrial laser scanner (Riegl VZ400) was used to scan 13 positions, in an open eucalypt woodland site at Karawatha Forest Park, near Brisbane, Australia. Scans were registered, and a digital surface model (DSM) produced using an intensity threshold and an iterative morphological filter. The DSMs produced from single scans were compared to the registered multi-scan point cloud using standard error metrics including: Root Mean Squared Error (RMSE), Mean Squared Error (MSE), range, absolute error and signed error. In addition the DSM was compared to a Digital Elevation Model (DEM) produced from Airborne Laser Scanning (ALS). Coarse woody debris was subsequently classified from the DSM using laser pulse properties, including: width and amplitude, as well as point spatial relationships (e.g. nearest neighbour slope vectors). Validation of the coarse woody debris classification was completed using true-colour photographs co-registered to the TLS point cloud. The volume and length of the coarse woody debris was calculated from the classified point cloud. A representative network of TLS sites will allow for up-scaling to large area assessment using airborne or space based sensors to monitor forest condition, biomass and fuel loads.

Point clouds segmentation as base for as-built BIM creation

NASA Astrophysics Data System (ADS)

Macher, H.; Landes, T.; Grussenmeyer, P.

2015-08-01

In this paper, a three steps segmentation approach is proposed in order to create 3D models from point clouds acquired by TLS inside buildings. The three scales of segmentation are floors, rooms and planes composing the rooms. First, floor segmentation is performed based on analysis of point distribution along Z axis. Then, for each floor, room segmentation is achieved considering a slice of point cloud at ceiling level. Finally, planes are segmented for each room, and planes corresponding to ceilings and floors are identified. Results of each step are analysed and potential improvements are proposed. Based on segmented point clouds, the creation of as-built BIM is considered in a future work section. Not only the classification of planes into several categories is proposed, but the potential use of point clouds acquired outside buildings is also considered.

Visualizing lava flow interiors with LiDAR

NASA Astrophysics Data System (ADS)

Whelley, P.; Garry, W. B.; Young, K.; Kruse, S.; Esmaeili, S.; Bell, E.; Paylor, R.

2017-12-01

Lava tube caves provide unprecedented access to the shallow (meters to tens of meters) interiors of lava flows. Surveying tube geometry and morphology can illuminate lava flow thermal history and emplacement mechanics. In an expedition to Lava Beds National Monument, California, our team collected ultra-high-resolution (< 10 cm) topography from the interiors of four lava tubes using a terrestrial laser scanner (TLS). More than 78 GB of point data (latitude, longitude, elevation) of the surface and interiors of Hercules Leg, Skull, Valentine and, Indian Well Caves were collected. For example, our point cloud for 50 m of Valentine Cave contains 748 million points (interior: 478 million, exterior: 270 million) from 28 TLS scans. The tubes visited range in diameter from < 1 m to > 10 m, and from 1 m to < 20 m of overburden. The interior morphology of the tubes remain pristine (i.e., un-eroded) after more than 10,000 years. The TLS data illuminate fresh-looking lava tube flow features (e.g., lava-coils, pillars, benches, and ropes) and post-emplacement deformation features (e.g., fractures, lava-drips, molded ceilings, and drop-blocks). Furthermore, the data provide context for geochemical and geophysical observations made in conjunction with the TLS survey. Lava tube morphology, observable in the TLS data, informs each tube's emplacement history. Skull cave is the largest ( 20 m in diameter) requiring a comparatively high lava discharge rate and suggesting this cave formed by roofing over a lava channel. In contrast, Valentine, Hercules Leg, and Indian Well Caves are narrower, (1 to 4 m) and have many branches, some of which rejoin the "main passage", suggesting they formed by developing a network of pathways within the lava flow. We will showcase video fly-throughs for these lava tubes, plus manipulable point clouds. The interactive eLighning presentation will encourage hands-on exploration of these unique data. We will guide them on a tour of the underground to discover and compare different morphologies of lava tubes.

A Framework Based on Reference Data with Superordinate Accuracy for the Quality Analysis of Terrestrial Laser Scanning-Based Multi-Sensor-Systems

PubMed Central

Stenz, Ulrich; Neumann, Ingo

2017-01-01

Terrestrial laser scanning (TLS) is an efficient solution to collect large-scale data. The efficiency can be increased by combining TLS with additional sensors in a TLS-based multi-sensor-system (MSS). The uncertainty of scanned points is not homogenous and depends on many different influencing factors. These include the sensor properties, referencing, scan geometry (e.g., distance and angle of incidence), environmental conditions (e.g., atmospheric conditions) and the scanned object (e.g., material, color and reflectance, etc.). The paper presents methods, infrastructure and results for the validation of the suitability of TLS and TLS-based MSS. Main aspects are the backward modelling of the uncertainty on the basis of reference data (e.g., point clouds) with superordinate accuracy and the appropriation of a suitable environment/infrastructure (e.g., the calibration process of the targets for the registration of laser scanner and laser tracker data in a common coordinate system with high accuracy) In this context superordinate accuracy means that the accuracy of the acquired reference data is better by a factor of 10 than the data of the validated TLS and TLS-based MSS. These aspects play an important role in engineering geodesy, where the aimed accuracy lies in a range of a few mm or less. PMID:28812998

a New Approach for Subway Tunnel Deformation Monitoring: High-Resolution Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Li, J.; Wan, Y.; Gao, X.

2012-07-01

With the improvement of the accuracy and efficiency of laser scanning technology, high-resolution terrestrial laser scanning (TLS) technology can obtain high precise points-cloud and density distribution and can be applied to high-precision deformation monitoring of subway tunnels and high-speed railway bridges and other fields. In this paper, a new approach using a points-cloud segmentation method based on vectors of neighbor points and surface fitting method based on moving least squares was proposed and applied to subway tunnel deformation monitoring in Tianjin combined with a new high-resolution terrestrial laser scanner (Riegl VZ-400). There were three main procedures. Firstly, a points-cloud consisted of several scanning was registered by linearized iterative least squares approach to improve the accuracy of registration, and several control points were acquired by total stations (TS) and then adjusted. Secondly, the registered points-cloud was resampled and segmented based on vectors of neighbor points to select suitable points. Thirdly, the selected points were used to fit the subway tunnel surface with moving least squares algorithm. Then a series of parallel sections obtained from temporal series of fitting tunnel surfaces were compared to analysis the deformation. Finally, the results of the approach in z direction were compared with the fiber optical displacement sensor approach and the results in x, y directions were compared with TS respectively, and comparison results showed the accuracy errors of x, y, z directions were respectively about 1.5 mm, 2 mm, 1 mm. Therefore the new approach using high-resolution TLS can meet the demand of subway tunnel deformation monitoring.

Integrated Processing of High Resolution Topographic Data for Soil Erosion Assessment Considering Data Acquisition Schemes and Surface Properties

NASA Astrophysics Data System (ADS)

Eltner, A.; Schneider, D.; Maas, H.-G.

2016-06-01

Soil erosion is a decisive earth surface process strongly influencing the fertility of arable land. Several options exist to detect soil erosion at the scale of large field plots (here 600 m²), which comprise different advantages and disadvantages depending on the applied method. In this study, the benefits of unmanned aerial vehicle (UAV) photogrammetry and terrestrial laser scanning (TLS) are exploited to quantify soil surface changes. Beforehand data combination, TLS data is co-registered to the DEMs generated with UAV photogrammetry. TLS data is used to detect global as well as local errors in the DEMs calculated from UAV images. Additionally, TLS data is considered for vegetation filtering. Complimentary, DEMs from UAV photogrammetry are utilised to detect systematic TLS errors and to further filter TLS point clouds in regard to unfavourable scan geometry (i.e. incidence angle and footprint) on gentle hillslopes. In addition, surface roughness is integrated as an important parameter to evaluate TLS point reliability because of the increasing footprints and thus area of signal reflection with increasing distance to the scanning device. The developed fusion tool allows for the estimation of reliable data points from each data source, considering the data acquisition geometry and surface properties, to finally merge both data sets into a single soil surface model. Data fusion is performed for three different field campaigns at a Mediterranean field plot. Successive DEM evaluation reveals continuous decrease of soil surface roughness, reappearance of former wheel tracks and local soil particle relocation patterns.

Forest structure analysis combining laser scanning with digital airborne photogrammetry

NASA Astrophysics Data System (ADS)

Lissak, Candide; Onda, Yuichi; Kato, Hiroaki

2017-04-01

The interest of Light Detection and Ranging (LiDAR) for vegetation structure analysis has been demonstrated in several research context. Indeed, airborne or ground Lidar surveys can provide detailed three-dimensional data of the forest structure from understorey forest to the canopy. To characterize at different timescale the vegetation components in dense cedar forests we can combine several sources point clouds from Lidar survey and photogrammetry data. For our study, Terrestrial Laser Scanning (TLS-Leica ScanStation C10 processed with Cyclone software) have been lead in three forest areas (≈ 200m2 each zone) mainly composed of japanese cedar (Japonica cryptomeria), in the region of Fukushima (Japan). The study areas are characterized by various vegetation densities. For the 3 areas, Terrestrial laser scanning has been performed from several location points and several heights. Various floors shootings (ground, 4m, 6m and 18m high) were able with the use of a several meters high tower implanted to study the canopy evolution following the Fukushima Daiishi nuclear power plant accident. The combination of all scanners provides a very dense 3D point cloud of ground and canopy structure (average 300 000 000 points). For the Tochigi forest area, a first test of a low-cost Unmanned Aerial Vehicle (UAV) photogrammetry has been lead and calibrated by ground GPS measurements to determine the coordinates of points. TLS combined to UAV photogrammetry make it possible to obtain information on vertical and horizontal structure of the Tochigi forest. This combination of technologies will allow the forest structure mapping, morphometry analysis and the assessment of biomass volume evolution from multi-temporal point clouds. In our research, we used a low-cost UAV 3 Advanced (200 m2 cover, 1300 pictures...). Data processing were performed using PotoScan Pro software to obtain a very dense point clouds to combine to TLS data set. This low-cost UAV photogrammetry data has been successfully used to derive information on the canopy cover. The purpose of this poster is to present the usability of combined remote sensing methods for forest structure analysis and 3D model reconstitution for a trend analysis of the forest changes.

The Segmentation of Point Clouds with K-Means and ANN (artifical Neural Network)

NASA Astrophysics Data System (ADS)

Kuçak, R. A.; Özdemir, E.; Erol, S.

2017-05-01

Segmentation of point clouds is recently used in many Geomatics Engineering applications such as the building extraction in urban areas, Digital Terrain Model (DTM) generation and the road or urban furniture extraction. Segmentation is a process of dividing point clouds according to their special characteristic layers. The present paper discusses K-means and self-organizing map (SOM) which is a type of ANN (Artificial Neural Network) segmentation algorithm which treats the segmentation of point cloud. The point clouds which generate with photogrammetric method and Terrestrial Lidar System (TLS) were segmented according to surface normal, intensity and curvature. Thus, the results were evaluated. LIDAR (Light Detection and Ranging) and Photogrammetry are commonly used to obtain point clouds in many remote sensing and geodesy applications. By photogrammetric method or LIDAR method, it is possible to obtain point cloud from terrestrial or airborne systems. In this study, the measurements were made with a Leica C10 laser scanner in LIDAR method. In photogrammetric method, the point cloud was obtained from photographs taken from the ground with a 13 MP non-metric camera.

The effect of short ground vegetation on terrestrial laser scans at a local scale

NASA Astrophysics Data System (ADS)

Fan, Lei; Powrie, William; Smethurst, Joel; Atkinson, Peter M.; Einstein, Herbert

2014-09-01

Terrestrial laser scanning (TLS) can record a large amount of accurate topographical information with a high spatial accuracy over a relatively short period of time. These features suggest it is a useful tool for topographical survey and surface deformation detection. However, the use of TLS to survey a terrain surface is still challenging in the presence of dense ground vegetation. The bare ground surface may not be illuminated due to signal occlusion caused by vegetation. This paper investigates vegetation-induced elevation error in TLS surveys at a local scale and its spatial pattern. An open, relatively flat area vegetated with dense grass was surveyed repeatedly under several scan conditions. A total station was used to establish an accurate representation of the bare ground surface. Local-highest-point and local-lowest-point filters were applied to the point clouds acquired for deriving vegetation height and vegetation-induced elevation error, respectively. The effects of various factors (for example, vegetation height, edge effects, incidence angle, scan resolution and location) on the error caused by vegetation are discussed. The results are of use in the planning and interpretation of TLS surveys of vegetated areas.

Anti-aliasing filters for deriving high-accuracy DEMs from TLS data: A case study from Freeport, Texas

NASA Astrophysics Data System (ADS)

Xiong, L.; Wang, G.; Wessel, P.

2017-12-01

Terrestrial laser scanning (TLS), also known as ground-based Light Detection and Ranging (LiDAR), has been frequently applied to build bare-earth digital elevation models (DEMs) for high-accuracy geomorphology studies. The point clouds acquired from TLS often achieve a spatial resolution at fingerprint (e.g., 3cm×3cm) to handprint (e.g., 10cm×10cm) level. A downsampling process has to be applied to decimate the massive point clouds and obtain portable DEMs. It is well known that downsampling can result in aliasing that causes different signal components to become indistinguishable when the signal is reconstructed from the datasets with a lower sampling rate. Conventional DEMs are mainly the results of upsampling of sparse elevation measurements from land surveying, satellite remote sensing, and aerial photography. As a consequence, the effects of aliasing have not been fully investigated in the open literature of DEMs. This study aims to investigate the spatial aliasing problem and implement an anti-aliasing procedure of regridding dense TLS data. The TLS data collected in the beach and dune area near Freeport, Texas in the summer of 2015 are used for this study. The core idea of the anti-aliasing procedure is to apply a low-pass spatial filter prior to conducting downsampling. This article describes the successful use of a fourth-order Butterworth low-pass spatial filter employed in the Generic Mapping Tools (GMT) software package as anti-aliasing filters. The filter can be applied as an isotropic filter with a single cutoff wavelength or as an anisotropic filter with different cutoff wavelengths in the X and Y directions. The cutoff wavelength for the isotropic filter is recommended to be three times the grid size of the target DEM.

Anti-aliasing filters for deriving high-accuracy DEMs from TLS data: A case study from Freeport, Texas

NASA Astrophysics Data System (ADS)

Xiong, Lin.; Wang, Guoquan; Wessel, Paul

2017-03-01

Terrestrial laser scanning (TLS), also known as ground-based Light Detection and Ranging (LiDAR), has been frequently applied to build bare-earth digital elevation models (DEMs) for high-accuracy geomorphology studies. The point clouds acquired from TLS often achieve a spatial resolution at fingerprint (e.g., 3 cm×3 cm) to handprint (e.g., 10 cm×10 cm) level. A downsampling process has to be applied to decimate the massive point clouds and obtain manageable DEMs. It is well known that downsampling can result in aliasing that causes different signal components to become indistinguishable when the signal is reconstructed from the datasets with a lower sampling rate. Conventional DEMs are mainly the results of upsampling of sparse elevation measurements from land surveying, satellite remote sensing, and aerial photography. As a consequence, the effects of aliasing caused by downsampling have not been fully investigated in the open literature of DEMs. This study aims to investigate the spatial aliasing problem of regridding dense TLS data. The TLS data collected from the beach and dune area near Freeport, Texas in the summer of 2015 are used for this study. The core idea of the anti-aliasing procedure is to apply a low-pass spatial filter prior to conducting downsampling. This article describes the successful use of a fourth-order Butterworth low-pass spatial filter employed in the Generic Mapping Tools (GMT) software package as an anti-aliasing filter. The filter can be applied as an isotropic filter with a single cutoff wavelength or as an anisotropic filter with two different cutoff wavelengths in the X and Y directions. The cutoff wavelength for the isotropic filter is recommended to be three times the grid size of the target DEM.

Use of terrestrial laser scanning for the documentation of quaternary caves

NASA Astrophysics Data System (ADS)

Tyszkowski, Sebastian; Kramkowski, Mateusz; Wiśniewska, Daria; Urban, Jan

2016-04-01

Due to the nature of their occurrence and genesis, caves in the Polish Lowlands represent a peculiarity of geological heritage, unique on the European scale. They are developed in Quaternary deposits, mostly at the contact of slabs or irregular bodies of cemented glacial or glaciofluvial deposits: conglomerates and sandstones, with unconsolidated deposits, mostly sands, gravels and clays. So far, 20 such caves have been recorded in Polish Lowlands. Most caves are only several meters long, the largest one is over 60 m long. Regardless of their origins, the character of host rocks is the reason that processes leading to their formation are simultaneously the destroying processes. Thus, the studied caves, as well as other caves of this region, are unstable, gradually evolving objects. The changes taking place in them are continuous and intense enough, therefore the documentation of their shape with the greatest possible accuracy and resolution becomes crucial. Such possibility can provide the technique of laser scanning. In 2014 three caves, including one recently discovered, were scanned using the TLS. Measurements of caves and their surroundings were conducted in May and July 2014 with a scanner RIEGL VZ-4000. Point clouds from several scanner positions were combined using the module Multi Station Adjustment in the RiSCAN software. This module allows to connect point clouds from successive positions without any objects of reference. After the merger of point clouds from individual positions and their filtration, a collection of several million points was obtained. The number of points projected on the wall was over 20 000 per m2. The using of TLS enabled to present the morphometric features impossible to obtain using traditional methods. High density of the point clouds allows registering even small details on the cave walls, as well as monitoring leaching, falling, grinding and flaking processes taking place in them. Thus, the most important advantage of the TLS is the "visual protection" of these objects unstable in geological time-scale. This study is a contribution to the Virtual Institute of Integrated Climate and Landscape Evolution Analyses - ICLEA- of the Helmholtz Association, Grant No VH-VI-415

Application of terrestrial laser scanning to the development and updating of the base map

NASA Astrophysics Data System (ADS)

Klapa, Przemysław; Mitka, Bartosz

2017-06-01

The base map provides basic information about land to individuals, companies, developers, design engineers, organizations, and government agencies. Its contents include spatial location data for control network points, buildings, land lots, infrastructure facilities, and topographic features. As the primary map of the country, it must be developed in accordance with specific laws and regulations and be continuously updated. The base map is a data source used for the development and updating of derivative maps and other large scale cartographic materials such as thematic or topographic maps. Thanks to the advancement of science and technology, the quality of land surveys carried out by means of terrestrial laser scanning (TLS) matches that of traditional surveying methods in many respects. This paper discusses the potential application of output data from laser scanners (point clouds) to the development and updating of cartographic materials, taking Poland's base map as an example. A few research sites were chosen to present the method and the process of conducting a TLS land survey: a fragment of a residential area, a street, the surroundings of buildings, and an undeveloped area. The entire map that was drawn as a result of the survey was checked by comparing it to a map obtained from PODGiK (pol. Powiatowy Ośrodek Dokumentacji Geodezyjnej i Kartograficznej - Regional Centre for Geodetic and Cartographic Records) and by conducting a field inspection. An accuracy and quality analysis of the conducted fieldwork and deskwork yielded very good results, which provide solid grounds for predicating that cartographic materials based on a TLS point cloud are a reliable source of information about land. The contents of the map that had been created with the use of the obtained point cloud were very accurately located in space (x, y, z). The conducted accuracy analysis and the inspection of the performed works showed that high quality is characteristic of TLS surveys. The accuracy of determining the location of the various map contents has been estimated at 0.02-0.03 m. The map was developed in conformity with the applicable laws and regulations as well as with best practice requirements.

Application of Integrated Photogrammetric and Terrestrial Laser Scanning Data to Cultural Heritage Surveying

NASA Astrophysics Data System (ADS)

Klapa, Przemyslaw; Mitka, Bartosz; Zygmunt, Mariusz

2017-12-01

The terrestrial laser scanning technology has a wide spectrum of applications, from land surveying, civil engineering and architecture to archaeology. The technology is capable of obtaining, in a short time, accurate coordinates of points which represent the surface of objects. Scanning of buildings is therefore a process which ensures obtaining information on all structural elements a building. The result is a point cloud consisting of millions of elements which are a perfect source of information on the object and its surrounding. The photogrammetric techniques allow documenting an object in high resolution in the form of orthophoto plans, or are a basis to develop 2D documentation or obtain point clouds for objects and 3D modelling. Integration of photogrammetric data and TLS brings a new quality in surveying historic monuments. Historic monuments play an important cultural and historical role. Centuries-old buildings require constant renovation and preservation of their structural and visual invariability while maintaining safety of people who use them. The full process of surveying allows evaluating the actual condition of monuments and planning repairs and renovations. Huge sizes and specific types of historic monuments cause problems in obtaining reliable and full information on them. The TLS technology allows obtaining such information in a short time and is non-invasive. A point cloud is not only a basis for developing architectural and construction documentation or evaluation of actual condition of a building. It also is a real visualization of monuments and their entire environment. The saved image of object surface can be presented at any time and place. A cyclical TLS survey of historic monuments allows detecting structural changes and evaluating damage and changes that cause deformation of monument’s components. The paper presents application of integrated photogrammetric data and TLS illustrated on an example of historic monuments from southern Poland. The cartographic materials are a basis for determining the actual condition of monuments and performing repair works. The materials also supplement the archive of monuments by means of recording the actual image of a monument in a virtual space.

Automated Coarse Registration of Point Clouds in 3d Urban Scenes Using Voxel Based Plane Constraint

NASA Astrophysics Data System (ADS)

Xu, Y.; Boerner, R.; Yao, W.; Hoegner, L.; Stilla, U.

2017-09-01

For obtaining a full coverage of 3D scans in a large-scale urban area, the registration between point clouds acquired via terrestrial laser scanning (TLS) is normally mandatory. However, due to the complex urban environment, the automatic registration of different scans is still a challenging problem. In this work, we propose an automatic marker free method for fast and coarse registration between point clouds using the geometric constrains of planar patches under a voxel structure. Our proposed method consists of four major steps: the voxelization of the point cloud, the approximation of planar patches, the matching of corresponding patches, and the estimation of transformation parameters. In the voxelization step, the point cloud of each scan is organized with a 3D voxel structure, by which the entire point cloud is partitioned into small individual patches. In the following step, we represent points of each voxel with the approximated plane function, and select those patches resembling planar surfaces. Afterwards, for matching the corresponding patches, a RANSAC-based strategy is applied. Among all the planar patches of a scan, we randomly select a planar patches set of three planar surfaces, in order to build a coordinate frame via their normal vectors and their intersection points. The transformation parameters between scans are calculated from these two coordinate frames. The planar patches set with its transformation parameters owning the largest number of coplanar patches are identified as the optimal candidate set for estimating the correct transformation parameters. The experimental results using TLS datasets of different scenes reveal that our proposed method can be both effective and efficient for the coarse registration task. Especially, for the fast orientation between scans, our proposed method can achieve a registration error of less than around 2 degrees using the testing datasets, and much more efficient than the classical baseline methods.

Small catchments DEM creation using Unmanned Aerial Vehicles

NASA Astrophysics Data System (ADS)

Gafurov, A. M.

2018-01-01

Digital elevation models (DEM) are an important source of information on the terrain, allowing researchers to evaluate various exogenous processes. The higher the accuracy of DEM the better the level of the work possible. An important source of data for the construction of DEMs are point clouds obtained with terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAV). In this paper, we present the results of constructing a DEM on small catchments using UAVs. Estimation of the UAV DEM showed comparable accuracy with the TLS if real time kinematic Global Positioning System (RTK-GPS) ground control points (GCPs) and check points (CPs) were used. In this case, the main source of errors in the construction of DEMs are the errors in the referencing of survey results.

Point-based and model-based geolocation analysis of airborne laser scanning data

NASA Astrophysics Data System (ADS)

Sefercik, Umut Gunes; Buyuksalih, Gurcan; Jacobsen, Karsten; Alkan, Mehmet

2017-01-01

Airborne laser scanning (ALS) is one of the most effective remote sensing technologies providing precise three-dimensional (3-D) dense point clouds. A large-size ALS digital surface model (DSM) covering the whole Istanbul province was analyzed by point-based and model-based comprehensive statistical approaches. Point-based analysis was performed using checkpoints on flat areas. Model-based approaches were implemented in two steps as strip to strip comparing overlapping ALS DSMs individually in three subareas and comparing the merged ALS DSMs with terrestrial laser scanning (TLS) DSMs in four other subareas. In the model-based approach, the standard deviation of height and normalized median absolute deviation were used as the accuracy indicators combined with the dependency of terrain inclination. The results demonstrate that terrain roughness has a strong impact on the vertical accuracy of ALS DSMs. From the relative horizontal shifts determined and partially improved by merging the overlapping strips and comparison of the ALS, and the TLS, data were found not to be negligible. The analysis of ALS DSM in relation to TLS DSM allowed us to determine the characteristics of the DSM in detail.

Performance Evaluation of sUAS Equipped with Velodyne HDL-32E LiDAR Sensor

NASA Astrophysics Data System (ADS)

Jozkow, G.; Wieczorek, P.; Karpina, M.; Walicka, A.; Borkowski, A.

2017-08-01

The Velodyne HDL-32E laser scanner is used more frequently as main mapping sensor in small commercial UASs. However, there is still little information about the actual accuracy of point clouds collected with such UASs. This work evaluates empirically the accuracy of the point cloud collected with such UAS. Accuracy assessment was conducted in four aspects: impact of sensors on theoretical point cloud accuracy, trajectory reconstruction quality, and internal and absolute point cloud accuracies. Theoretical point cloud accuracy was evaluated by calculating 3D position error knowing errors of used sensors. The quality of trajectory reconstruction was assessed by comparing position and attitude differences from forward and reverse EKF solution. Internal and absolute accuracies were evaluated by fitting planes to 8 point cloud samples extracted for planar surfaces. In addition, the absolute accuracy was also determined by calculating point 3D distances between LiDAR UAS and reference TLS point clouds. Test data consisted of point clouds collected in two separate flights performed over the same area. Executed experiments showed that in tested UAS, the trajectory reconstruction, especially attitude, has significant impact on point cloud accuracy. Estimated absolute accuracy of point clouds collected during both test flights was better than 10 cm, thus investigated UAS fits mapping-grade category.

Combination of Tls Point Clouds and 3d Data from Kinect v2 Sensor to Complete Indoor Models

NASA Astrophysics Data System (ADS)

Lachat, E.; Landes, T.; Grussenmeyer, P.

2016-06-01

The combination of data coming from multiple sensors is more and more applied for remote sensing issues (multi-sensor imagery) but also in cultural heritage or robotics, since it often results in increased robustness and accuracy of the final data. In this paper, the reconstruction of building elements such as window frames or door jambs scanned thanks to a low cost 3D sensor (Kinect v2) is presented. Their combination within a global point cloud of an indoor scene acquired with a terrestrial laser scanner (TLS) is considered. If the added elements acquired with the Kinect sensor enable to reach a better level of detail of the final model, an adapted acquisition protocol may also provide several benefits as for example time gain. The paper aims at analyzing whether the two measurement techniques can be complementary in this context. The limitations encountered during the acquisition and reconstruction steps are also investigated.

Terrestrial Laser Scanning for Coastal Geomorphologic Research in Western Greece

NASA Astrophysics Data System (ADS)

Hoffmeister, D.; Tilly, N.; Curdt, C.; Aasen, H.; Ntageretzis, K.; Hadler, H.; Willershäuser, T.; Vött, A.; Bareth, G.

2012-07-01

We used terrestrial laser scanning (TLS) for (i) accurate volume estimations of dislocated boulders moved by high-energy impacts and for (ii) monitoring of annual coastal changes. In this contribution, we present three selected sites in Western Greece that were surveyed during a time span of four years (2008-2011). The Riegl LMS-Z420i laser scanner was used in combination with a precise DGPS system (Topcon HiPer Pro). Each scan position and a further target were recorded for georeferencing and merging of the point clouds. For the annual detection of changes, reference points for the base station of the DGPS system were marked. Our studies show that TLS is capable to accurately estimate volumes of boulders, which were dislocated and deposited inland from the littoral zone. The mass of each boulder was calculated from this 3D-reconstructed volume and according density data. The masses turned out to be considerably smaller than common estimated masses based on tape-measurements and according density approximations. The accurate mass data was incorporated into wave transport equations, which estimate wave velocities of high-energy impacts. As expected, these show smaller wave velocities, due to the incorporated smaller mass. Furthermore, TLS is capable to monitor annual changes on coastal areas. The changes are detected by comparing high resolution digital elevation models from every year. On a beach site, larger areas of sea-weed and sandy sediments are eroded. In contrast, bigger gravel with 30-50 cm diameter was accumulated. At the other area with bigger boulders and a different coastal configuration only slightly differences were detectable. In low-lying coastal areas and along recent beaches, post-processing of point clouds turned out to be more difficult, due to noise effects by water and shadowing effects. However, our studies show that the application of TLS in different littoral settings is an appropriate and promising tool. The combination of both instruments worked well and the annual positioning procedure with own survey point is precose for this purpose.

Weighing trees with lasers: advances, challenges and opportunities

PubMed Central

Boni Vicari, M.; Burt, A.; Calders, K.; Lewis, S. L.; Raumonen, P.; Wilkes, P.

2018-01-01

Terrestrial laser scanning (TLS) is providing exciting new ways to quantify tree and forest structure, particularly above-ground biomass (AGB). We show how TLS can address some of the key uncertainties and limitations of current approaches to estimating AGB based on empirical allometric scaling equations (ASEs) that underpin all large-scale estimates of AGB. TLS provides extremely detailed non-destructive measurements of tree form independent of tree size and shape. We show examples of three-dimensional (3D) TLS measurements from various tropical and temperate forests and describe how the resulting TLS point clouds can be used to produce quantitative 3D models of branch and trunk size, shape and distribution. These models can drastically improve estimates of AGB, provide new, improved large-scale ASEs, and deliver insights into a range of fundamental tree properties related to structure. Large quantities of detailed measurements of individual 3D tree structure also have the potential to open new and exciting avenues of research in areas where difficulties of measurement have until now prevented statistical approaches to detecting and understanding underlying patterns of scaling, form and function. We discuss these opportunities and some of the challenges that remain to be overcome to enable wider adoption of TLS methods. PMID:29503726

Building a LiDAR point cloud simulator: Testing algorithms for high resolution topographic change

NASA Astrophysics Data System (ADS)

Carrea, Dario; Abellán, Antonio; Derron, Marc-Henri; Jaboyedoff, Michel

2014-05-01

Terrestrial laser technique (TLS) is becoming a common tool in Geosciences, with clear applications ranging from the generation of a high resolution 3D models to the monitoring of unstable slopes and the quantification of morphological changes. Nevertheless, like every measurement techniques, TLS still has some limitations that are not clearly understood and affect the accuracy of the dataset (point cloud). A challenge in LiDAR research is to understand the influence of instrumental parameters on measurement errors during LiDAR acquisition. Indeed, different critical parameters interact with the scans quality at different ranges: the existence of shadow areas, the spatial resolution (point density), and the diameter of the laser beam, the incidence angle and the single point accuracy. The objective of this study is to test the main limitations of different algorithms usually applied on point cloud data treatment, from alignment to monitoring. To this end, we built in MATLAB(c) environment a LiDAR point cloud simulator able to recreate the multiple sources of errors related to instrumental settings that we normally observe in real datasets. In a first step we characterized the error from single laser pulse by modelling the influence of range and incidence angle on single point data accuracy. In a second step, we simulated the scanning part of the system in order to analyze the shifting and angular error effects. Other parameters have been added to the point cloud simulator, such as point spacing, acquisition window, etc., in order to create point clouds of simple and/or complex geometries. We tested the influence of point density and vitiating point of view on the Iterative Closest Point (ICP) alignment and also in some deformation tracking algorithm with same point cloud geometry, in order to determine alignment and deformation detection threshold. We also generated a series of high resolution point clouds in order to model small changes on different environments (erosion, landslide monitoring, etc) and we then tested the use of filtering techniques using 3D moving windows along the space and time, which considerably reduces data scattering due to the benefits of data redundancy. In conclusion, the simulator allowed us to improve our different algorithms and to understand how instrumental error affects final results. And also, improve the methodology of scans acquisition to find the best compromise between point density, positioning and acquisition time with the best accuracy possible to characterize the topographic change.

Marker-free registration of forest terrestrial laser scanner data pairs with embedded confidence metrics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Aardt, Jan; Romanczyk, Paul; van Leeuwen, Martin

Terrestrial laser scanning (TLS) has emerged as an effective tool for rapid comprehensive measurement of object structure. Registration of TLS data is an important prerequisite to overcome the limitations of occlusion. However, due to the high dissimilarity of point cloud data collected from disparate viewpoints in the forest environment, adequate marker-free registration approaches have not been developed. The majority of studies instead rely on the utilization of artificial tie points (e.g., reflective tooling balls) placed within a scene to aid in coordinate transformation. We present a technique for generating view-invariant feature descriptors that are intrinsic to the point cloud datamore » and, thus, enable blind marker-free registration in forest environments. To overcome the limitation of initial pose estimation, we employ a voting method to blindly determine the optimal pairwise transformation parameters, without an a priori estimate of the initial sensor pose. To provide embedded error metrics, we developed a set theory framework in which a circular transformation is traversed between disjoint tie point subsets. This provides an upper estimate of the Root Mean Square Error (RMSE) confidence associated with each pairwise transformation. Output RMSE errors are commensurate with the RMSE of input tie points locations. Thus, while the mean output RMSE=16.3cm, improved results could be achieved with a more precise laser scanning system. This study 1) quantifies the RMSE of the proposed marker-free registration approach, 2) assesses the validity of embedded confidence metrics using receiver operator characteristic (ROC) curves, and 3) informs optimal sample spacing considerations for TLS data collection in New England forests. Furthermore, while the implications for rapid, accurate, and precise forest inventory are obvious, the conceptual framework outlined here could potentially be extended to built environments.« less

Marker-free registration of forest terrestrial laser scanner data pairs with embedded confidence metrics

DOE PAGES

Van Aardt, Jan; Romanczyk, Paul; van Leeuwen, Martin; ...

2016-04-04

Terrestrial laser scanning (TLS) has emerged as an effective tool for rapid comprehensive measurement of object structure. Registration of TLS data is an important prerequisite to overcome the limitations of occlusion. However, due to the high dissimilarity of point cloud data collected from disparate viewpoints in the forest environment, adequate marker-free registration approaches have not been developed. The majority of studies instead rely on the utilization of artificial tie points (e.g., reflective tooling balls) placed within a scene to aid in coordinate transformation. We present a technique for generating view-invariant feature descriptors that are intrinsic to the point cloud datamore » and, thus, enable blind marker-free registration in forest environments. To overcome the limitation of initial pose estimation, we employ a voting method to blindly determine the optimal pairwise transformation parameters, without an a priori estimate of the initial sensor pose. To provide embedded error metrics, we developed a set theory framework in which a circular transformation is traversed between disjoint tie point subsets. This provides an upper estimate of the Root Mean Square Error (RMSE) confidence associated with each pairwise transformation. Output RMSE errors are commensurate with the RMSE of input tie points locations. Thus, while the mean output RMSE=16.3cm, improved results could be achieved with a more precise laser scanning system. This study 1) quantifies the RMSE of the proposed marker-free registration approach, 2) assesses the validity of embedded confidence metrics using receiver operator characteristic (ROC) curves, and 3) informs optimal sample spacing considerations for TLS data collection in New England forests. Furthermore, while the implications for rapid, accurate, and precise forest inventory are obvious, the conceptual framework outlined here could potentially be extended to built environments.« less

Integration of terrestrial laser scanner, ultrasonic and petrographical data in the diagnostic process on stone building materials

NASA Astrophysics Data System (ADS)

Casula, Giuseppe; Fais, Silvana; Giovanna Bianchi, Maria; Cuccuru, Francesco; Ligas, Paola

2015-04-01

The Terrestrial Laser Scanner (TLS) is a modern contactless non-destructive technique (NDT) useful to 3D-model complex-shaped objects with a few hours' field survey. A TLS survey produces very dense point clouds made up of coordinates of point and radiometric information given by the reflectivity parameter i.e. the ratio between the amount of energy emitted by the sensor and the energy reflected by the target object. Modern TLSs used in architecture are phase instruments where the phase difference obtained by comparing the emitted laser pulse with the reflected one is proportional to the sensor-target distance expressed as an integer multiple of the half laser wavelength. TLS data are processed by registering point clouds i.e. by referring them to the same reference frame and by aggregation after a fine registration procedure. The resulting aggregate point cloud can be compared with graphic primitives as single or multiple planes, cylinders or spheres, and the resulting residuals give a morphological map that affords information about the state of conservation of the building materials used in historical or modern buildings, in particular when compared with other NDT techniques. In spite of its great productivity, the TLS technique is limited in that it is unable to penetrate the investigated materials. For this reason both the 3D residuals map and the reflectivity map need to be correlated with the results of other NDT techniques such as the ultrasonic method, and a complex study of the composition of building materials is also necessary. The application of a methodology useful to evaluate the quality of stone building materials and locate altered or damaged zones is presented in this study based on the integrated application of three independent techniques, two non destructive such as the TLS and the ultrasonic techniques in the 24-54 kHz range, and a third to analyze the petrographical characteristics of the stone materials, mainly the texture, with optical and scanning electronic microscopy (SEM). A very interesting case study is presented on a carbonate stone door of great architectural and historical interest, well suited to a high definition survey . This architectural element is inside the "Palazzo di Città" museum in the historical center of the Town of Cagliari, Sardinia (Italy). The integrated application of TLS and in situ and laboratory ultrasonic techniques, enhanced by the knowledge of the petrographic characteristics of the rocks, improves the diagnostic process and affords reliable information on the state of conservation of the stones used to build it. The integrated use of the above non destructive techniques also provides suitable data for a possible restoration and future preservation. Acknowledgments: This work was financially supported by Sardinian Local Administration (RAS - LR 7,August 2007, n.7, Promotion of Scientific Research and Innovation in Sardinia - Italy, Responsible Scientist: S.Fais).

Stochastic Surface Mesh Reconstruction

NASA Astrophysics Data System (ADS)

Ozendi, M.; Akca, D.; Topan, H.

2018-05-01

A generic and practical methodology is presented for 3D surface mesh reconstruction from the terrestrial laser scanner (TLS) derived point clouds. It has two main steps. The first step deals with developing an anisotropic point error model, which is capable of computing the theoretical precisions of 3D coordinates of each individual point in the point cloud. The magnitude and direction of the errors are represented in the form of error ellipsoids. The following second step is focused on the stochastic surface mesh reconstruction. It exploits the previously determined error ellipsoids by computing a point-wise quality measure, which takes into account the semi-diagonal axis length of the error ellipsoid. The points only with the least errors are used in the surface triangulation. The remaining ones are automatically discarded.

Comparing RIEGL RiCOPTER UAV LiDAR Derived Canopy Height and DBH with Terrestrial LiDAR

PubMed Central

Bartholomeus, Harm M.; Kooistra, Lammert

2017-01-01

In recent years, LIght Detection And Ranging (LiDAR) and especially Terrestrial Laser Scanning (TLS) systems have shown the potential to revolutionise forest structural characterisation by providing unprecedented 3D data. However, manned Airborne Laser Scanning (ALS) requires costly campaigns and produces relatively low point density, while TLS is labour intense and time demanding. Unmanned Aerial Vehicle (UAV)-borne laser scanning can be the way in between. In this study, we present first results and experiences with the RIEGL RiCOPTER with VUX®-1UAV ALS system and compare it with the well tested RIEGL VZ-400 TLS system. We scanned the same forest plots with both systems over the course of two days. We derived Digital Terrain Models (DTMs), Digital Surface Models (DSMs) and finally Canopy Height Models (CHMs) from the resulting point clouds. ALS CHMs were on average 11.5 cm higher in five plots with different canopy conditions. This showed that TLS could not always detect the top of canopy. Moreover, we extracted trunk segments of 58 trees for ALS and TLS simultaneously, of which 39 could be used to model Diameter at Breast Height (DBH). ALS DBH showed a high agreement with TLS DBH with a correlation coefficient of 0.98 and root mean square error of 4.24 cm. We conclude that RiCOPTER has the potential to perform comparable to TLS for estimating forest canopy height and DBH under the studied forest conditions. Further research should be directed to testing UAV-borne LiDAR for explicit 3D modelling of whole trees to estimate tree volume and subsequently Above-Ground Biomass (AGB). PMID:29039755

Comparing RIEGL RiCOPTER UAV LiDAR Derived Canopy Height and DBH with Terrestrial LiDAR.

PubMed

Brede, Benjamin; Lau, Alvaro; Bartholomeus, Harm M; Kooistra, Lammert

2017-10-17

In recent years, LIght Detection And Ranging (LiDAR) and especially Terrestrial Laser Scanning (TLS) systems have shown the potential to revolutionise forest structural characterisation by providing unprecedented 3D data. However, manned Airborne Laser Scanning (ALS) requires costly campaigns and produces relatively low point density, while TLS is labour intense and time demanding. Unmanned Aerial Vehicle (UAV)-borne laser scanning can be the way in between. In this study, we present first results and experiences with the RIEGL RiCOPTER with VUX ® -1UAV ALS system and compare it with the well tested RIEGL VZ-400 TLS system. We scanned the same forest plots with both systems over the course of two days. We derived Digital Terrain Model (DTMs), Digital Surface Model (DSMs) and finally Canopy Height Model (CHMs) from the resulting point clouds. ALS CHMs were on average 11.5 c m higher in five plots with different canopy conditions. This showed that TLS could not always detect the top of canopy. Moreover, we extracted trunk segments of 58 trees for ALS and TLS simultaneously, of which 39 could be used to model Diameter at Breast Height (DBH). ALS DBH showed a high agreement with TLS DBH with a correlation coefficient of 0.98 and root mean square error of 4.24 c m . We conclude that RiCOPTER has the potential to perform comparable to TLS for estimating forest canopy height and DBH under the studied forest conditions. Further research should be directed to testing UAV-borne LiDAR for explicit 3D modelling of whole trees to estimate tree volume and subsequently Above-Ground Biomass (AGB).

On the surface roughness of a braidplain in an Alpine proglacial area

NASA Astrophysics Data System (ADS)

Baewert, H.; Morche, D.; Culha, C.

2014-12-01

Surface roughness is a crucial parameter of studies concerning (paleo) flood peak discharge estimation and related factors (cf. stream power). Usually, the analysis requires preliminary knowledge of grain size distribution of the study site. However, in some cases this is impractical, especially when investigating large areas, or even impossible due to inaccessibility. In addition, the particles in the channel are usually hidden by other particles or incorporated into finer sediment. Therefore, removing particles from the channel bottom is not suitable, because it falsifies the results. Here, the application of noninvasive terrestrial laser scanning (TLS) offers new possibilities. The indirect recording of the surface leads to a significant reduction of the workload. Furthermore, form roughness and burial/imbrication are taken into account. However, there are some disadvantages in using TLS. The resolution of the TLS data is a limiting factor when defining surface roughness, because coarseness at finer detail will not be captured at lower resolution (Baewert et al. 2014). There are numerous other factors, which may alter the results. We would like to further understand how the noise associated with TLS data alters the outcome and whether the interpolation method has an influence. This study focuses on the latter two issues. For this purpose, a braidplain in the forefield of the glacier Gepatschferner in Austria was surveyed using a terrestrial laser scanner. The images were taken from different angles and with different resolutions. Subsequently, the outliers are removed from the point cloud in order to investigate the influence of the noise. Thinning the point cloud is another method used to understand the effects of the point density. References Baewert, H., Bimböse, M., Bryk, A., Rascher, E., Schmidt, K.-H. & Morche, D. (2014): Roughness determination of coarse grained alpine river bed surfaces using Terrestrial Laser Scanning data. - Zeitschrift für Geomorphologie N.F. 58(1): 81-95. Doi: 10.1127/0372-8854/2013/S-00127 .

Utilizing the Iterative Closest Point (ICP) algorithm for enhanced registration of high resolution surface models - more than a simple black-box application

NASA Astrophysics Data System (ADS)

Stöcker, Claudia; Eltner, Anette

2016-04-01

Advances in computer vision and digital photogrammetry (i.e. structure from motion) allow for fast and flexible high resolution data supply. Within geoscience applications and especially in the field of small surface topography, high resolution digital terrain models and dense 3D point clouds are valuable data sources to capture actual states as well as for multi-temporal studies. However, there are still some limitations regarding robust registration and accuracy demands (e.g. systematic positional errors) which impede the comparison and/or combination of multi-sensor data products. Therefore, post-processing of 3D point clouds can heavily enhance data quality. In this matter the Iterative Closest Point (ICP) algorithm represents an alignment tool which iteratively minimizes distances of corresponding points within two datasets. Even though tool is widely used; it is often applied as a black-box application within 3D data post-processing for surface reconstruction. Aiming for precise and accurate combination of multi-sensor data sets, this study looks closely at different variants of the ICP algorithm including sub-steps of point selection, point matching, weighting, rejection, error metric and minimization. Therefore, an agricultural utilized field was investigated simultaneously by terrestrial laser scanning (TLS) and unmanned aerial vehicle (UAV) sensors two times (once covered with sparse vegetation and once bare soil). Due to different perspectives both data sets show diverse consistency in terms of shadowed areas and thus gaps so that data merging would provide consistent surface reconstruction. Although photogrammetric processing already included sub-cm accurate ground control surveys, UAV point cloud exhibits an offset towards TLS point cloud. In order to achieve the transformation matrix for fine registration of UAV point clouds, different ICP variants were tested. Statistical analyses of the results show that final success of registration and therefore data quality depends particularly on parameterization and choice of error metric, especially for erroneous data sets as in the case of sparse vegetation cover. At this, the point-to-point metric is more sensitive to data "noise" than the point-to-plane metric which results in considerably higher cloud-to-cloud distances. Concluding, in order to comply with accuracy demands of high resolution surface reconstruction and the aspect that ground control surveys can reach their limits both in time exposure and terrain accessibility ICP algorithm represents a great tool to refine rough initial alignment. Here different variants of registration modules allow for individual application according to the quality of the input data.

Methods and considerations to determine sphere center from terrestrial laser scanner point cloud data

NASA Astrophysics Data System (ADS)

Rachakonda, Prem; Muralikrishnan, Bala; Cournoyer, Luc; Cheok, Geraldine; Lee, Vincent; Shilling, Meghan; Sawyer, Daniel

2017-10-01

The Dimensional Metrology Group at the National Institute of Standards and Technology is performing research to support the development of documentary standards within the ASTM E57 committee. This committee is addressing the point-to-point performance evaluation of a subclass of 3D imaging systems called terrestrial laser scanners (TLSs), which are laser-based and use a spherical coordinate system. This paper discusses the usage of sphere targets for this effort, and methods to minimize the errors due to the determination of their centers. The key contributions of this paper include methods to segment sphere data from a TLS point cloud, and the study of some of the factors that influence the determination of sphere centers.

The Use of Computer Vision Algorithms for Automatic Orientation of Terrestrial Laser Scanning Data

NASA Astrophysics Data System (ADS)

Markiewicz, Jakub Stefan

2016-06-01

The paper presents analysis of the orientation of terrestrial laser scanning (TLS) data. In the proposed data processing methodology, point clouds are considered as panoramic images enriched by the depth map. Computer vision (CV) algorithms are used for orientation, which are applied for testing the correctness of the detection of tie points and time of computations, and for assessing difficulties in their implementation. The BRISK, FASRT, MSER, SIFT, SURF, ASIFT and CenSurE algorithms are used to search for key-points. The source data are point clouds acquired using a Z+F 5006h terrestrial laser scanner on the ruins of Iłża Castle, Poland. Algorithms allowing combination of the photogrammetric and CV approaches are also presented.

Rock face stability analysis and potential rockfall source detection in Yosemite Valley

NASA Astrophysics Data System (ADS)

Matasci, B.; Stock, G. M.; Jaboyedoff, M.; Oppikofer, T.; Pedrazzini, A.; Carrea, D.

2012-04-01

Rockfall hazard in Yosemite Valley is especially high owing to the great cliff heights (~1 km), the fracturing of the steep granitic cliffs, and the widespread occurrence of surface parallel sheeting or exfoliation joints. Between 1857 and 2011, 890 documented rockfalls and other slope movements caused 15 fatalities and at least 82 injuries. The first part of this study focused on realizing a structural study for Yosemite Valley at both regional (valley-wide) and local (rockfall source area) scales. The dominant joint sets were completely characterized by their orientation, persistence, spacing, roughness and opening. Spacing and trace length for each joint set were accurately measured on terrestrial laser scanning (TLS) point clouds with the software PolyWorks (InnovMetric). Based on this fundamental information the second part of the study aimed to detect the most important failure mechanisms leading to rockfalls. With the software Matterocking and the 1m cell size DEM, we calculated the number of possible failure mechanisms (wedge sliding, planar sliding, toppling) per cell, for several cliffs of the valley. Orientation, spacing and persistence measurements directly issued from field and TLS data were inserted in the Matterocking calculations. TLS point clouds are much more accurate than the 1m DEM and show the overhangs of the cliffs. Accordingly, with the software Coltop 3D we developed a methodology similar to the one used with Matterocking to identify on the TLS point clouds the areas of a cliff with the highest number of failure mechanisms. Exfoliation joints are included in this stability analysis in the same way as the other joint sets, with the only difference that their orientation is parallel to the local cliff orientation and thus variable. This means that, in two separate areas of a cliff, the exfoliation joint set is taken into account with different dip direction and dip, but its effect on the stability assessment is the same. Areas with a high density of possible failure mechanisms are shown to be more susceptible to rockfalls, demonstrating a link between high fracture density and rockfall susceptibility. This approach enables locating the most probable future rockfall sources and provides key elements needed to evaluate the potential volume and run-out distance of rockfall blocks. This information is used to improve rockfall hazard assessment in Yosemite Valley and elsewhere.

3-D Deformation Field Of The 2010 El Mayor-Cucapah (Mexico) Earthquake From Matching Before To After Aerial Lidar Point Clouds

NASA Astrophysics Data System (ADS)

Hinojosa-Corona, A.; Nissen, E.; Arrowsmith, R.; Krishnan, A. K.; Saripalli, S.; Oskin, M. E.; Arregui, S. M.; Limon, J. F.

2012-12-01

The Mw 7.2 El Mayor-Cucapah earthquake (EMCE) of 4 April 2010 generated a ~110 km long, NW-SE trending rupture, with normal and right-lateral slip in the order of 2-3m in the Sierra Cucapah, the northern half, where the surface rupture has the most outstanding expression. Vertical and horizontal surface displacements produced by the EMCE have been addressed separately by other authors with a variety of aerial and satellite remote sensing techniques. Slip variation along fault and post-seismic scarp erosion and diffusion have been estimated in other studies using terrestrial LiDAR (TLS) on segments of the rupture. To complement these other studies, we computed the 3D deformation field by comparing pre- to post-event point clouds from aerial LiDAR surveys. The pre-event LiDAR with lower point density (0.013-0.033 pts m-2) required filtering and post-processing before comparing with the denser (9-18 pts m-2) more accurate post event dataset. The 3-dimensional surface displacement field was determined using an adaptation of the Iterative Closest Point (ICP) algorithm, implemented in the open source Point Cloud Library (PCL). The LiDAR datasets are first split into a grid of windows, and for each one, ICP iteratively converges on the rigid body transformation (comprising a translation and a rotation) that best aligns the pre- to post-event points. Testing on synthetic datasets perturbed with displacements of known magnitude showed that windows with dimensions of 100-200m gave the best results for datasets with these densities. Here we present the deformation field with detailed displacements in segments of the surface rupture where its expression was recognized by ICP from the point cloud matching, mainly the scarcely vegetated Sierra Cucapah with the Borrego and Paso Superior fault segments the most outstanding, where we are able to compare our results with values measured in the field and results from TLS reported in other works. EMC simulated displacement field for a 2m right lateral normal (east block down) slip on the pre-event point cloud along the Borrego fault on Sierra Cucapah. Shaded DEM from post-event point cloud as backdrop.

Simulating Various Terrestrial and Uav LIDAR Scanning Configurations for Understory Forest Structure Modelling

NASA Astrophysics Data System (ADS)

Hämmerle, M.; Lukač, N.; Chen, K.-C.; Koma, Zs.; Wang, C.-K.; Anders, K.; Höfle, B.

2017-09-01

Information about the 3D structure of understory vegetation is of high relevance in forestry research and management (e.g., for complete biomass estimations). However, it has been hardly investigated systematically with state-of-the-art methods such as static terrestrial laser scanning (TLS) or laser scanning from unmanned aerial vehicle platforms (ULS). A prominent challenge for scanning forests is posed by occlusion, calling for proper TLS scan position or ULS flight line configurations in order to achieve an accurate representation of understory vegetation. The aim of our study is to examine the effect of TLS or ULS scanning strategies on (1) the height of individual understory trees and (2) understory canopy height raster models. We simulate full-waveform TLS and ULS point clouds of a virtual forest plot captured from various combinations of max. 12 TLS scan positions or 3 ULS flight lines. The accuracy of the respective datasets is evaluated with reference values given by the virtually scanned 3D triangle mesh tree models. TLS tree height underestimations range up to 1.84 m (15.30 % of tree height) for single TLS scan positions, but combining three scan positions reduces the underestimation to maximum 0.31 m (2.41 %). Combining ULS flight lines also results in improved tree height representation, with a maximum underestimation of 0.24 m (2.15 %). The presented simulation approach offers a complementary source of information for efficient planning of field campaigns aiming at understory vegetation modelling.

Geomorphological activity at a rock glacier front detected with a 3D density-based clustering algorithm

NASA Astrophysics Data System (ADS)

Micheletti, Natan; Tonini, Marj; Lane, Stuart N.

2017-02-01

Acquisition of high density point clouds using terrestrial laser scanners (TLSs) has become commonplace in geomorphic science. The derived point clouds are often interpolated onto regular grids and the grids compared to detect change (i.e. erosion and deposition/advancement movements). This procedure is necessary for some applications (e.g. digital terrain analysis), but it inevitably leads to a certain loss of potentially valuable information contained within the point clouds. In the present study, an alternative methodology for geomorphological analysis and feature detection from point clouds is proposed. It rests on the use of the Density-Based Spatial Clustering of Applications with Noise (DBSCAN), applied to TLS data for a rock glacier front slope in the Swiss Alps. The proposed methods allowed the detection and isolation of movements directly from point clouds which yield to accuracies in the following computation of volumes that depend only on the actual registered distance between points. We demonstrated that these values are more conservative than volumes computed with the traditional DEM comparison. The results are illustrated for the summer of 2015, a season of enhanced geomorphic activity associated with exceptionally high temperatures.

Individual Rocks Segmentation in Terrestrial Laser Scanning Point Cloud Using Iterative Dbscan Algorithm

NASA Astrophysics Data System (ADS)

Walicka, A.; Jóźków, G.; Borkowski, A.

2018-05-01

The fluvial transport is an important aspect of hydrological and geomorphologic studies. The knowledge about the movement parameters of different-size fractions is essential in many applications, such as the exploration of the watercourse changes, the calculation of the river bed parameters or the investigation of the frequency and the nature of the weather events. Traditional techniques used for the fluvial transport investigations do not provide any information about the long-term horizontal movement of the rocks. This information can be gained by means of terrestrial laser scanning (TLS). However, this is a complex issue consisting of several stages of data processing. In this study the methodology for individual rocks segmentation from TLS point cloud has been proposed, which is the first step for the semi-automatic algorithm for movement detection of individual rocks. The proposed algorithm is executed in two steps. Firstly, the point cloud is classified as rocks or background using only geometrical information. Secondly, the DBSCAN algorithm is executed iteratively on points classified as rocks until only one stone is detected in each segment. The number of rocks in each segment is determined using principal component analysis (PCA) and simple derivative method for peak detection. As a result, several segments that correspond to individual rocks are formed. Numerical tests were executed on two test samples. The results of the semi-automatic segmentation were compared to results acquired by manual segmentation. The proposed methodology enabled to successfully segment 76 % and 72 % of rocks in the test sample 1 and test sample 2, respectively.

Automatic registration of terrestrial point clouds based on panoramic reflectance images and efficient BaySAC

NASA Astrophysics Data System (ADS)

Kang, Zhizhong

2013-10-01

This paper presents a new approach to automatic registration of terrestrial laser scanning (TLS) point clouds utilizing a novel robust estimation method by an efficient BaySAC (BAYes SAmpling Consensus). The proposed method directly generates reflectance images from 3D point clouds, and then using SIFT algorithm extracts keypoints to identify corresponding image points. The 3D corresponding points, from which transformation parameters between point clouds are computed, are acquired by mapping the 2D ones onto the point cloud. To remove false accepted correspondences, we implement a conditional sampling method to select the n data points with the highest inlier probabilities as a hypothesis set and update the inlier probabilities of each data point using simplified Bayes' rule for the purpose of improving the computation efficiency. The prior probability is estimated by the verification of the distance invariance between correspondences. The proposed approach is tested on four data sets acquired by three different scanners. The results show that, comparing with the performance of RANSAC, BaySAC leads to less iterations and cheaper computation cost when the hypothesis set is contaminated with more outliers. The registration results also indicate that, the proposed algorithm can achieve high registration accuracy on all experimental datasets.

Exploring topographic methods for monitoring morphological changes in mountain channels of different size and slope

NASA Astrophysics Data System (ADS)

Theule, Joshua; Bertoldi, Gabriele; Comiti, Francesco; Macconi, Pierpaolo; Mazzorana, Bruno

2015-04-01

High resolution digital elevation models (DEM) can easily be obtained using either laser scanning technology or photogrammetry with structure from motion (SFM). The scale, resolution, and accuracy can vary according to how the data is acquired, such as by helicopter, drone, or extendable pole. In the Autonomous Province of Bozen-Bolzano (Northern Italy), we had the opportunity to compare several of these techniques at different scales in mountain streams ranging from low-gradient braided rivers to steep debris flow channels. The main objective is to develop protocols for efficient monitoring of morphologic changes in different parts of the river systems. For SFM methods, we used the software "Photoscan Professional" (Agisoft) to generate densified point clouds. Both artificial and natural targets were used to georeference them. In some cases, targets were not even necessary and point clouds could be aligned with older point clouds by using the iterative closest point algorithm in the freeware "CloudCompare". At the Mareit/Mareta River, a restored braided river, an airborne laser scan survey (2011) was compared to a SFM DEM derived from a helicopter photo survey (2014) carried out (by the Autonomous Province of Bolzano) at approximately 100 m above ground. Photogrammetry point clouds had an alignment error of 1.5 cm and had three times more data coverage than laser scanning. Indeed, the large spacing and clustering of 2011 ALS swaths led to areas of no data when a 10-cm grid is developed. In the Gadria basin, a debris flow monitoring catchment, we used a sediment retention basin to compare debris flow volumes resulting from i) a drone (by the "Mavtech" company) survey at 10 m above ground (with GoPro camera), ii) a 5-m pole-mounted camera (with Canon EOS 700D) and iii) a 3-m pole-mounted camera (with GoPro Hero Silver3+) to a iv) TLS survey. As the drone had limited load capacity (especially at high elevations) we used the lightweight GoPro Hero 3+, but due to the its low image quality and low survey elevations, more reference points were needed which became impractical. In contrast, the TLS survey was heavily influenced by the shadowing of the rough surfaces. Even though the pole-mounted camera is of lower technology, it has proven to be accurate (< 2cm RMSE) with better data coverage than the TLS due to the aerial perspective. Furthermore, the pole-mounted camera is the most field efficient due to the dependency of one person (little training required), little weather limitations, and a five times faster data acquisition than TLS surveys. A shorter pole with a GoPro camera allows faster and easier surveys but with the drawback of less precision and more noise. We easily obtained up to 6 DEMs of difference (DoD)within one year in active channel reaches and gullies in the Gadria catchment. This allowed to capture morphologic changes after important debris flow events, bedload transport, and bank erosion. DoDs also allowed us to monitor damages of structures due to erosional and depositional processes on alluvial fans. Our study highlights the importance of the bird's eye view which can be easily obtained by low cost SFM photogrammetry.

Using a terrestrial laser scanner to measure spatiotemporal surface moisture dynamics

NASA Astrophysics Data System (ADS)

Smit, Y.; Donker, J.; Ruessink, G.

2017-12-01

A terrestrial laser scanner (TLS) is an active remote sensing technique that utilizes the round trip time of an emitted laser beam to provide the range between the laser scanner and the backscattering object. It is routinely used for topographic mapping, forest measurements or 3D city models since it derives useful object representations by means of a dense three-dimensional (3D) point cloud. Here, we present a novel application using the returned intensity of the emitted beam to detect surface moisture with the RIEGL VZ-400. Because this TLS operates at a wavelength near a water absorption band (1550 nm), reflectance is an accurate parameter to measure surface moisture over its full range. Five days of intensive laser scanning were performed on a Dutch beach to illustrate the applicability of the TLS. Concurrent gravimetric surface moisture samples were collected to calibrate the relation between reflectance and surface moisture. Results reveal the reflectance output is a robust parameter to measure surface moisture from the thin upper layer over its full range from 0% to 25%. The obtained calibration curve of the presented TLS, describing the relationship between reflectance and surface moisture, has a root-mean-square error of 2.7% and a correlation coefficient squared of 0.85. This relation holds to about 60 m from the TLS. Within this distance the TLS typically produces O(10^6-10^7) data points, which we averaged into surface moisture maps with a 1 x 1 m resolution. This grid size largely removes small moisture disturbances induced by, for example, footprints or tire tracks, while retaining larger scale trends. Concluding, TLS (RIEGL-VZ 400) is a highly suited technique to accurately and robustly measure spatiotemporal surface moisture variations on a coastal beach with high spatial ( 1 x 1 m) and temporal ( 15-30min.) resolution.

Terrestrial and Aerial Laser Scanning Data Integration Using Wavelet Analysis for the Purpose of 3D Building Modeling

PubMed Central

Kedzierski, Michal; Fryskowska, Anna

2014-01-01

Visualization techniques have been greatly developed in the past few years. Three-dimensional models based on satellite and aerial imagery are now being enhanced by models generated using Aerial Laser Scanning (ALS) data. The most modern of such scanning systems have the ability to acquire over 50 points per square meter and to register a multiple echo, which allows the reconstruction of the terrain together with the terrain cover. However, ALS data accuracy is less than 10 cm and the data is often incomplete: there is no information about ground level (in most scanning systems), and often around the facade or structures which have been covered by other structures. However, Terrestrial Laser Scanning (TLS) not only acquires higher accuracy data (1–5 cm) but is also capable of registering those elements which are incomplete or not visible using ALS methods (facades, complicated structures, interiors, etc.). Therefore, to generate a complete 3D model of a building in high Level of Details, integration of TLS and ALS data is necessary. This paper presents the wavelet-based method of processing and integrating data from ALS and TLS. Methods of choosing tie points to combine point clouds in different datum will be analyzed. PMID:25004157

Terrestrial and aerial laser scanning data integration using wavelet analysis for the purpose of 3D building modeling.

PubMed

Kedzierski, Michal; Fryskowska, Anna

2014-07-07

Visualization techniques have been greatly developed in the past few years. Three-dimensional models based on satellite and aerial imagery are now being enhanced by models generated using Aerial Laser Scanning (ALS) data. The most modern of such scanning systems have the ability to acquire over 50 points per square meter and to register a multiple echo, which allows the reconstruction of the terrain together with the terrain cover. However, ALS data accuracy is less than 10 cm and the data is often incomplete: there is no information about ground level (in most scanning systems), and often around the facade or structures which have been covered by other structures. However, Terrestrial Laser Scanning (TLS) not only acquires higher accuracy data (1-5 cm) but is also capable of registering those elements which are incomplete or not visible using ALS methods (facades, complicated structures, interiors, etc.). Therefore, to generate a complete 3D model of a building in high Level of Details, integration of TLS and ALS data is necessary. This paper presents the wavelet-based method of processing and integrating data from ALS and TLS. Methods of choosing tie points to combine point clouds in different datum will be analyzed.

Terrestrial Laser Scanner (TLS) as a tool for the reconstruction of extreme wave event characteristics

NASA Astrophysics Data System (ADS)

Schneider, Bastian; Hoffmann, Gösta

2017-04-01

The shores of the Northern Indian Ocean were exposed to extreme wave inundation in the past. Two relevant hazards, storm surges triggered by tropical cyclones and tsunamis, are known to occur in the region but are rarely instrumentally recorded. Various sediment deposits along the coast are the only remnants of those past events. A profound understanding of return periods and magnitudes of past events is essential for developing land-use planning and risk mitigation measures in Oman and neighboring countries. A detailed investigation of these deposits, in this case primarily blocks and boulder trains but also fine grained sediments, provides insight on parameters such as wave height and inundation distance. These parameters can then be used for modeling inundation scenarios superimposed on modern infrastructure. We are investigating the spatial 3D-distribution of the extreme wave event sediments along the coastline through a high-precision survey of the event deposits using a Faro Focus 3D X330 TLS. A TLS is capable of recording high-detail and colored point clouds, which allows detailed measurements and has proved to be a powerful tool in geosciences. These multi-parameter point clouds in combination with dating results serve as a base for extreme wave event return period and magnitude estimations. Relevant parameters on large sediments are size, shape, volume, mass as well as relative arrangement, sorting and orientation. Furthermore, the TLS data is used to distinguish between the various boulder lithologies using a multi-scale supervised classification. Surface roughness as a result of weathering can serve as an indicator for exposure time of boulders and hint on various generations of extreme wave events. The distribution of the boulders relative to the site they were quarried from indicates on the flow direction of the waves and consequently might help to distinguish between storm and tsunami waves.

Random forest regression modelling for forest aboveground biomass estimation using RISAT-1 PolSAR and terrestrial LiDAR data

NASA Astrophysics Data System (ADS)

Mangla, Rohit; Kumar, Shashi; Nandy, Subrata

2016-05-01

SAR and LiDAR remote sensing have already shown the potential of active sensors for forest parameter retrieval. SAR sensor in its fully polarimetric mode has an advantage to retrieve scattering property of different component of forest structure and LiDAR has the capability to measure structural information with very high accuracy. This study was focused on retrieval of forest aboveground biomass (AGB) using Terrestrial Laser Scanner (TLS) based point clouds and scattering property of forest vegetation obtained from decomposition modelling of RISAT-1 fully polarimetric SAR data. TLS data was acquired for 14 plots of Timli forest range, Uttarakhand, India. The forest area is dominated by Sal trees and random sampling with plot size of 0.1 ha (31.62m*31.62m) was adopted for TLS and field data collection. RISAT-1 data was processed to retrieve SAR data based variables and TLS point clouds based 3D imaging was done to retrieve LiDAR based variables. Surface scattering, double-bounce scattering, volume scattering, helix and wire scattering were the SAR based variables retrieved from polarimetric decomposition. Tree heights and stem diameters were used as LiDAR based variables retrieved from single tree vertical height and least square circle fit methods respectively. All the variables obtained for forest plots were used as an input in a machine learning based Random Forest Regression Model, which was developed in this study for forest AGB estimation. Modelled output for forest AGB showed reliable accuracy (RMSE = 27.68 t/ha) and a good coefficient of determination (0.63) was obtained through the linear regression between modelled AGB and field-estimated AGB. The sensitivity analysis showed that the model was more sensitive for the major contributed variables (stem diameter and volume scattering) and these variables were measured from two different remote sensing techniques. This study strongly recommends the integration of SAR and LiDAR data for forest AGB estimation.

Multi-temporal terrestrial laser scanning for identifying rockslide modifications: potentialities and problems

NASA Astrophysics Data System (ADS)

Castagnetti, Cristina; Bertacchini, Eleonora; Capra, Alessandro; Rivola, Riccardo

2013-04-01

The heart of this research is to provide an efficient methodology for a reliable acquisition and interpretation of Terrestrial Laser Scanner (TLS) data in the application field of landslide monitoring. In particular, rockslides, which are characterized by vertical walls of rock and by a complex morphology, are of great concern in the study. In these cases the airborne laser scanning is not able to provide useful and reliable description and the terrestrial laser scanning might be the only possible choice to obtain a good and reliable description of the geomorphology or to identify the changes occurred over time. The last purpose is still a challenging task when long distances are involved because the accurate and punctual identification of displacements is not possible due to the laser beam divergence. The final purpose of the research is a proposal of a methodology which is based on TLS technology for identifying displacements and extracting geomorphological changes. The approach is clearly based on a multi-temporal analysis which is computed on several repetitions of TLS surveys performed on the area of interest. To achieve best results and optimize the processing strategy, different methods about point clouds alignment have been tested together with algorithms both for filtering and post-processing. The case study is the Collagna Landslide that is located in the North Appennines (Reggio Emilia, Italy) on the right flank of Biola torrent. The large scale composite landslide area is made both by a wide rock slide sector and a more limited earth slide sector that, after high precipitation rates, disrupted the National Road 63 in December 2008. An integrated monitoring system is installed since 2009 and comprises both point-based technologies such as extensometers, total station and global positioning system, and also area-based technologies such as airborne laser scanner, long-range TLS and ground-based radar. This choice allows to couple the advantages of both approaches. The research focuses on TLS surveys for trying to detect displacements which might be responsible for instability. Four point clouds acquired in the last two years allow to monitor the spatial displacements of the whole slope, especially focusing on the rockslide sector. It is worth to underline an important aspect which contributes to highlight the significance of the work: the mean scanning distance is about 1.3 km. Few examples exist in literature about the use of very long-range TLS for displacements investigation. By sequentially analyzing TLS surfaces, displacement maps have been obtained for the rockslide area. Confirmation have been achieved by comparing results with movements of reflectors sited on the entire slope and continuously measured by total station. Such validation strengthens the idea that TLS has serious potentialities to be successfully used for analyzing instability. Comparing surfaces is not easy at all, thus a discussion about the encountered problems will be taken into account: any significant detail about potentialities and difficulties of the alignment strategy and the processing procedure will be given together with details about the specific algorithm implemented for filtering displacements by taking into account actual geomorphological conditions.

Rapid, decimeter-resolution fault zone topography mapped with Structure from Motion

NASA Astrophysics Data System (ADS)

Johnson, K. L.; Nissen, E.; Saripalli, S.; Arrowsmith, R.; McGarey, P.; Scharer, K. M.; Williams, P. L.

2013-12-01

Recent advances in the generation of high-resolution topography have revolutionized our ability to detect subtle geomorphic features related to ground-rupturing earthquakes. Currently, the most popular topographic mapping methods are airborne Light Detection And Ranging (LiDAR) and terrestrial laser scanning (TLS). Though powerful, these laser scanning methods have some inherent drawbacks: airborne LiDAR is expensive and can be logistically complicated, while TLS is time consuming even for small field sites and suffers from patchy coverage due to its restricted field-of-view. An alternative mapping technique, called Structure from Motion (SfM), builds upon traditional photogrammetry to reproduce the topography and texture of a scene from photographs taken at varying viewpoints. The improved availability of cheap, unmanned aerial vehicles (UAVs) as camera platforms further expedites data collection by covering large areas efficiently with optimal camera angles. Here, we introduce a simple and affordable UAV- or balloon-based SfM mapping system which can produce dense point clouds and sub-decimeter resolution digital elevation models (DEMs) registered to geospatial coordinates using either the photograph's GPS tags or a few ground control points across the scene. The system is ideally suited for studying ruptures of prehistoric, historic, and modern earthquakes in areas of sparse or low-lying vegetation. We use two sites from southern California faults to illustrate. The first is the ~0.1 km2 Washington Street site, located on the Banning strand of the San Andreas fault near Thousand Palms. A high-resolution DEM with ~700 point/m2 was produced from 230 photos collected on a balloon platform flying at 50 m above the ground. The second site is the Galway Lake Road site, which spans a ~1 km strip of the 1992 Mw 7.3 Landers earthquake on the Emerson Fault. The 100 point/m2 DEM was produced from 267 photos taken with a balloon platform at a height of 60 m above the ground. We compare our SfM results to existing airborne LiDAR or TLS datasets. Each SfM survey required less than 2 hours for setup and data collection, an allotment much lower than that required for TLS data collection, given the size of the sites. Processing time is somewhat slower, but depends on the quality of the DEM desired and is almost fully automated. The SfM point cloud densities we present are comparable to TLS but exceed the density of most airborne LiDAR and the orthophotos (texture maps) from the SfM are valuable complements to the DEMs. The SfM topography illuminates features along the faults that can be used to measure offsets from past ruptures, offering the potential to enhance regional seismic hazard analyses.

An efficient global energy optimization approach for robust 3D plane segmentation of point clouds

NASA Astrophysics Data System (ADS)

Dong, Zhen; Yang, Bisheng; Hu, Pingbo; Scherer, Sebastian

2018-03-01

Automatic 3D plane segmentation is necessary for many applications including point cloud registration, building information model (BIM) reconstruction, simultaneous localization and mapping (SLAM), and point cloud compression. However, most of the existing 3D plane segmentation methods still suffer from low precision and recall, and inaccurate and incomplete boundaries, especially for low-quality point clouds collected by RGB-D sensors. To overcome these challenges, this paper formulates the plane segmentation problem as a global energy optimization because it is robust to high levels of noise and clutter. First, the proposed method divides the raw point cloud into multiscale supervoxels, and considers planar supervoxels and individual points corresponding to nonplanar supervoxels as basic units. Then, an efficient hybrid region growing algorithm is utilized to generate initial plane set by incrementally merging adjacent basic units with similar features. Next, the initial plane set is further enriched and refined in a mutually reinforcing manner under the framework of global energy optimization. Finally, the performances of the proposed method are evaluated with respect to six metrics (i.e., plane precision, plane recall, under-segmentation rate, over-segmentation rate, boundary precision, and boundary recall) on two benchmark datasets. Comprehensive experiments demonstrate that the proposed method obtained good performances both in high-quality TLS point clouds (i.e., http://SEMANTIC3D.NET)

Terrestrial laser scanning used to detect asymmetries in boat hulls

NASA Astrophysics Data System (ADS)

Roca-Pardiñas, Javier; López-Alvarez, Francisco; Ordóñez, Celestino; Menéndez, Agustín; Bernardo-Sánchez, Antonio

2012-01-01

We describe a methodology for identifying asymmetries in boat hull sections reconstructed from point clouds captured using a terrestrial laser scanner (TLS). A surface was first fit to the point cloud using a nonparametric regression method that permitted the construction of a continuous smooth surface. Asymmetries in cross-sections of the surface were identified using a bootstrap resampling technique that took into account uncertainty in the coordinates of the scanned points. Each reconstructed section was analyzed to check, for a given level of significance, that it was within the confidence interval for the theoretical symmetrical section. The method was applied to the study of asymmetries in a medium-sized yacht. Identified were differences of up to 5 cm between the real and theoretical sections in some parts of the hull.

Point Cloud Management Through the Realization of the Intelligent Cloud Viewer Software

NASA Astrophysics Data System (ADS)

Costantino, D.; Angelini, M. G.; Settembrini, F.

2017-05-01

The paper presents a software dedicated to the elaboration of point clouds, called Intelligent Cloud Viewer (ICV), made in-house by AESEI software (Spin-Off of Politecnico di Bari), allowing to view point cloud of several tens of millions of points, also on of "no" very high performance systems. The elaborations are carried out on the whole point cloud and managed by means of the display only part of it in order to speed up rendering. It is designed for 64-bit Windows and is fully written in C ++ and integrates different specialized modules for computer graphics (Open Inventor by SGI, Silicon Graphics Inc), maths (BLAS, EIGEN), computational geometry (CGAL, Computational Geometry Algorithms Library), registration and advanced algorithms for point clouds (PCL, Point Cloud Library), advanced data structures (BOOST, Basic Object Oriented Supporting Tools), etc. ICV incorporates a number of features such as, for example, cropping, transformation and georeferencing, matching, registration, decimation, sections, distances calculation between clouds, etc. It has been tested on photographic and TLS (Terrestrial Laser Scanner) data, obtaining satisfactory results. The potentialities of the software have been tested by carrying out the photogrammetric survey of the Castel del Monte which was already available in previous laser scanner survey made from the ground by the same authors. For the aerophotogrammetric survey has been adopted a flight height of approximately 1000ft AGL (Above Ground Level) and, overall, have been acquired over 800 photos in just over 15 minutes, with a covering not less than 80%, the planned speed of about 90 knots.

Integration of Point Clouds Dataset from Different Sensors

NASA Astrophysics Data System (ADS)

Abdullah, C. K. A. F. Che Ku; Baharuddin, N. Z. S.; Ariff, M. F. M.; Majid, Z.; Lau, C. L.; Yusoff, A. R.; Idris, K. M.; Aspuri, A.

2017-02-01

Laser Scanner technology become an option in the process of collecting data nowadays. It is composed of Airborne Laser Scanner (ALS) and Terrestrial Laser Scanner (TLS). ALS like Phoenix AL3-32 can provide accurate information from the viewpoint of rooftop while TLS as Leica C10 can provide complete data for building facade. However if both are integrated, it is able to produce more accurate data. The focus of this study is to integrate both types of data acquisition of ALS and TLS and determine the accuracy of the data obtained. The final results acquired will be used to generate models of three-dimensional (3D) buildings. The scope of this study is focusing on data acquisition of UTM Eco-home through laser scanning methods such as ALS which scanning on the roof and the TLS which scanning on building façade. Both device is used to ensure that no part of the building that are not scanned. In data integration process, both are registered by the selected points among the manmade features which are clearly visible in Cyclone 7.3 software. The accuracy of integrated data is determined based on the accuracy assessment which is carried out using man-made registration methods. The result of integration process can achieve below 0.04m. This integrated data then are used to generate a 3D model of UTM Eco-home building using SketchUp software. In conclusion, the combination of the data acquisition integration between ALS and TLS would produce the accurate integrated data and able to use for generate a 3D model of UTM eco-home. For visualization purposes, the 3D building model which generated is prepared in Level of Detail 3 (LOD3) which recommended by City Geographic Mark-Up Language (CityGML).

Cloud Forensics Issues

DTIC Science & Technology

2014-07-01

voluminous threat environment. Today we regularly construct seamless encrypted communications between machines through SSL or other TLS . These do not...return to the web application and the user, As a prerequisite to end-to-end communication an SSL , or other suitable TLS is set up between each of the...an TLS connection is established between the requestor and the service provider, within which a WS-Security package will be sent to the service

Relative range error evaluation of terrestrial laser scanners using a plate, a sphere, and a novel dual-sphere-plate target.

PubMed

Muralikrishnan, Bala; Rachakonda, Prem; Lee, Vincent; Shilling, Meghan; Sawyer, Daniel; Cheok, Geraldine; Cournoyer, Luc

2017-12-01

Terrestrial laser scanners (TLS) are a class of 3D imaging systems that produce a 3D point cloud by measuring the range and two angles to a point. The fundamental measurement of a TLS is range. Relative range error is one component of the overall range error of TLS and its estimation is therefore an important aspect in establishing metrological traceability of measurements performed using these systems. Target geometry is an important aspect to consider when realizing the relative range tests. The recently published ASTM E2938-15 mandates the use of a plate target for the relative range tests. While a plate target may reasonably be expected to produce distortion free data even at far distances, the target itself needs careful alignment at each of the relative range test positions. In this paper, we discuss relative range experiments performed using a plate target and then address the advantages and limitations of using a sphere target. We then present a novel dual-sphere-plate target that draws from the advantages of the sphere and the plate without the associated limitations. The spheres in the dual-sphere-plate target are used simply as fiducials to identify a point on the surface of the plate that is common to both the scanner and the reference instrument, thus overcoming the need to carefully align the target.

Open Pit Mine 3d Mapping by Tls and Digital Photogrammetry: 3d Model Update Thanks to a Slam Based Approach

NASA Astrophysics Data System (ADS)

Vassena, G.; Clerici, A.

2018-05-01

The state of the art of 3D surveying technologies, if correctly applied, allows to obtain 3D coloured models of large open pit mines using different technologies as terrestrial laser scanner (TLS), with images, combined with UAV based digital photogrammetry. GNSS and/or total station are also currently used to geo reference the model. The University of Brescia has been realised a project to map in 3D an open pit mine located in Botticino, a famous location of marble extraction close to Brescia in North Italy. Terrestrial Laser Scanner 3D point clouds combined with RGB images and digital photogrammetry from UAV have been used to map a large part of the cave. By rigorous and well know procedures a 3D point cloud and mesh model have been obtained using an easy and rigorous approach. After the description of the combined mapping process, the paper describes the innovative process proposed for the daily/weekly update of the model itself. To realize this task a SLAM technology approach is described, using an innovative approach based on an innovative instrument capable to run an automatic localization process and real time on the field change detection analysis.

Quantifying the Hydraulic Roughness of Vegetation using Physical Modelling and Through-Water Terrestrial Laser Scanning.

NASA Astrophysics Data System (ADS)

Vasilopoulos, G.; Leyland, J.; Nield, J. M.

2016-12-01

Plants function as large-scale, flexible obstacles that exert additional drag on water flows, affecting local scale turbulence and the structure of the boundary layer. Hence, vegetation plays a significant role controlling surface water flows and modulating geomorphic change. This makes it an important, but often under considered, component when undertaking flood or erosion control actions, or designing river restoration strategies. Vegetative drag varies depending on flow conditions and the associated vegetation structure and temporary reconfiguration of the plant. Whilst several approaches have been developed to describe this relationship, they have been limited due to the difficulty of accurately and precisely characterising the vegetation itself, especially when it is submerged in flow. In practice, vegetative drag is commonly expressed through bulk parameters that are typically derived from lookup tables. Terrestrial Laser Scanning (TLS) has the ability to capture the surface of in situ objects as 3D point clouds, at high resolution (mm), precision and accuracy, even when submerged in water. This allows for the development of workflows capable of quantifying vegetation structure in 3D from dense TLS point cloud data. A physical modelling experiment investigated the impact of a series of structurally variable plants on flow at three different velocities. Acoustic Doppler Velocimetry (ADV) was employed to measure the velocity field and the corresponding fluvial drag of the vegetation was estimated using a bulk roughness function calculated from precise measurements of the water surface slope. Simultaneously, through-water TLS was employed to capture snapshots of plant deformation and distinguish plant structure during flow, using a porosity approach. Although plant type is important, we find a good relationship between plant structure, drag and adjustments of the velocity field.

Monitoring of glacial and periglacial landforms using terrestrial laser scanning.The case of the Col des Gentianes moraine (Valais, Switzerland)

NASA Astrophysics Data System (ADS)

Mazotti, B.; Oppikofer, T.; Riff, F.; Lambiel, C.; Loye, A.; Jaboyedoff, M.

2009-04-01

Between 1977 and 1979, important civil engineering works were made on the moraine of "Col des Gentianes", which is situated 2894 meters above the sea level in the region of Mt-Fort, Valais, Switzerland. Two cableway station arrivals, a departure station to the Mt-Fort and a restaurant were built on. This moraine was formed during the last advance of the Tortin glacier during the Little Ice Age. Since 1980, the glacier has melted dramatically and the moraine is creeping. The moraine in front of the cableway departure station to the Mt-Fort sagged by 2 to 4 meters in 30 years. A large volume of ice is still present within the moraine and melting of the ice would make its stability even more precarious. Since 2007 the moraine is monitored by terrestrial laser scanning (TLS). Two TLS campaigns were made in July and October 2008 and compared to datasets acquired in 2007. The comparison of sequential TLS point clouds enabled the detection and quantification of movements in the moraine: (1) by computing oblique (shortest) or vertical differences, (2) by creating displacement vectors and (3) by profiles across the TLS point clouds. Between July and October 2008 the Tortin glacier melted by 1 to 2.5 m and the moraine creeped in direction of the glacier by 0.25 to 0.75 m. During the same period, a landslide zone has been clearly identified downslope of the cableway departure station to the Mt-Fort. Important movements between 1.5 to 5 meters were measured on this landslide through the creation of displacement vectors. This landslide scarp is delimited by 0.5 and 1 meter downward displacements in two month. Already in 2007, a less important landslide was identified and some ice had been observed in the scarp zone. The TLS permitted to analyze the distribution of these movements on the entire moraine and not only on few measurement points like given by D-GPS. The computed TLS displacement vectors are in good agreement with annual D-GPS measurements performed on this moraine. In this study, two types of movements have been identified: (1) Superficial movements, like the landslide, and (2) general creep movements. To explain these movements, two parameters are crucial: (1) The annual melting rate of the glacier below the moraine reached up to 4 m, which has certainly an impact on the stability of the moraine (important movements observed in the landslide zone). The glacier acted as a buttress stabilizing the moraine. The observed glacier retreat and shrinkage causes the destabilisation of the moraine and finally leads to the measured surface movements. (2) The degradation of permafrost (deduced from thermal profiles acquired in a borehole in the moraine), destabilizes the moraine and causes an increase of the creep displacements measured for the whole moraine. The acceleration of the movements is now actively monitored because they can influence the stability of man-made infrastructures. This study was also the opportunity to test the ability of TLS in monitoring of glacial and periglacial landforms like moraines.

Modelling Single Tree Structure with Terrestrial Laser Scanner

NASA Astrophysics Data System (ADS)

Yurtseven, H.; Akgül, M.; Gülci, S.

2017-11-01

Recent technological developments, which has reliable accuracy and quality for all engineering works, such as remote sensing tools have wide range use in forestry applications. Last decade, sustainable use and management opportunities of forest resources are favorite topics. Thus, precision of obtained data plays an important role in evaluation of current status of forests' value. The use of aerial and terrestrial laser technology has more reliable and effective models to advance the appropriate natural resource management. This study investigates the use of terrestrial laser scanner (TLS) technology in forestry, and also the methodological data processing stages for tree volume extraction is explained. Z+F Imager 5010C TLS system was used for measure single tree information such as tree height, diameter of breast height, branch volume and canopy closure. In this context more detailed and accurate data can be obtained than conventional inventory sampling in forestry by using TLS systems. However the accuracy of obtained data is up to the experiences of TLS operator in the field. Number of scan stations and its positions are other important factors to reduce noise effect and accurate 3D modelling. The results indicated that the use of point cloud data to extract tree information for forestry applications are promising methodology for precision forestry.

Mobile Laser Scanning along Dieppe coastal cliffs: reliability of the acquired point clouds applied to rockfall assessments

NASA Astrophysics Data System (ADS)

Michoud, Clément; Carrea, Dario; Augereau, Emmanuel; Cancouët, Romain; Costa, Stéphane; Davidson, Robert; Delacourt, Chirstophe; Derron, Marc-Henri; Jaboyedoff, Michel; Letortu, Pauline; Maquaire, Olivier

2013-04-01

Dieppe coastal cliffs, in Normandy, France, are mainly formed by sub-horizontal deposits of chalk and flintstone. Largely destabilized by an intense weathering and the Channel sea erosion, small and large rockfalls are regularly observed and contribute to retrogressive cliff processes. During autumn 2012, cliff and intertidal topographies have been acquired with a Terrestrial Laser Scanner (TLS) and a Mobile Laser Scanner (MLS), coupled with seafloor bathymetries realized with a multibeam echosounder (MBES). MLS is a recent development of laser scanning based on the same theoretical principles of aerial LiDAR, but using smaller, cheaper and portable devices. The MLS system, which is composed by an accurate dynamic positioning and orientation (INS) devices and a long range LiDAR, is mounted on a marine vessel; it is then possible to quickly acquire in motion georeferenced LiDAR point clouds with a resolution of about 15 cm. For example, it takes about 1 h to scan of shoreline of 2 km long. MLS is becoming a promising technique supporting erosion and rockfall assessments along the shores of lakes, fjords or seas. In this study, the MLS system used to acquire cliffs and intertidal areas of the Cap d'Ailly was composed by the INS Applanix POS-MV 320 V4 and the LiDAR Optech Ilirs LR. On the same day, three MLS scans with large overlaps (J1, J21 and J3) have been performed at ranges from 600 m at 4 knots (low tide) up to 200 m at 2.2 knots (up tide) with a calm sea at 2.5 Beaufort (small wavelets). Mean scan resolutions go from 26 cm for far scan (J1) to about 8.1 cm for close scan (J3). Moreover, one TLS point cloud on this test site has been acquired with a mean resolution of about 2.3 cm, using a Riegl LMS Z390i. In order to quantify the reliability of the methodology, comparisons between scans have been realized with the software Polyworks™, calculating shortest distances between points of one cloud and the interpolated surface of the reference point cloud. A MatLab™ routine was also written to extract interesting statistics. First, mean distances between points of the reference point clouds (J21) and its interpolated surface are about 0.35 cm with a standard deviation of 15 cm; errors introduced during the surface interpolation step, especially in vegetated areas, may explain those differences. Then, mean distances between J1's points (resp. J3) and the J21's reference surface are about 4 cm (resp. -17 cm) with a standard deviation of 53 cm (resp. 55 cm). After a best fit alignment of J1 and J3 on J21, mean distances between J1 (resp. J3) and the J21's reference surface decrease to about 0.15 cm (resp. 1.6 cm) with a standard deviation of 41 cm (resp. 21 cm). Finally, mean distances between the TLS point clouds and the J21's reference surface are about 3.2 cm with a standard deviation of 26 cm. In conclusion, MLS devices are able to quickly scan long shoreline with a resolution up to about 10 cm. The precision of the acquired data is relatively small enough to investigate on geomorphological features of coastal cliffs. The ability of the MLS technique to detect and monitor small and large rockfalls will be investigated thanks to new acquisitions of the Dieppe cliffs in a close future and enhanced adapted post-processing steps.

Multitemporal field-based plant height estimation using 3D point clouds generated from small unmanned aerial systems high-resolution imagery

NASA Astrophysics Data System (ADS)

Malambo, L.; Popescu, S. C.; Murray, S. C.; Putman, E.; Pugh, N. A.; Horne, D. W.; Richardson, G.; Sheridan, R.; Rooney, W. L.; Avant, R.; Vidrine, M.; McCutchen, B.; Baltensperger, D.; Bishop, M.

2018-02-01

Plant breeders and agronomists are increasingly interested in repeated plant height measurements over large experimental fields to study critical aspects of plant physiology, genetics and environmental conditions during plant growth. However, collecting such measurements using commonly used manual field measurements is inefficient. 3D point clouds generated from unmanned aerial systems (UAS) images using Structure from Motion (SfM) techniques offer a new option for efficiently deriving in-field crop height data. This study evaluated UAS/SfM for multitemporal 3D crop modelling and developed and assessed a methodology for estimating plant height data from point clouds generated using SfM. High-resolution images in visible spectrum were collected weekly across 12 dates from April (planting) to July (harvest) 2016 over 288 maize (Zea mays L.) and 460 sorghum (Sorghum bicolor L.) plots using a DJI Phantom 3 Professional UAS. The study compared SfM point clouds with terrestrial lidar (TLS) at two dates to evaluate the ability of SfM point clouds to accurately capture ground surfaces and crop canopies, both of which are critical for plant height estimation. Extended plant height comparisons were carried out between SfM plant height (the 90th, 95th, 99th percentiles and maximum height) per plot and field plant height measurements at six dates throughout the growing season to test the repeatability and consistency of SfM estimates. High correlations were observed between SfM and TLS data (R2 = 0.88-0.97, RMSE = 0.01-0.02 m and R2 = 0.60-0.77 RMSE = 0.12-0.16 m for the ground surface and canopy comparison, respectively). Extended height comparisons also showed strong correlations (R2 = 0.42-0.91, RMSE = 0.11-0.19 m for maize and R2 = 0.61-0.85, RMSE = 0.12-0.24 m for sorghum). In general, the 90th, 95th and 99th percentile height metrics had higher correlations to field measurements than the maximum metric though differences among them were not statistically significant. The accuracy of SfM plant height estimates fluctuated over the growing period, likely impacted by the changing reflectance regime due to plant development. Overall, these results show a potential path to reducing laborious manual height measurement and enhancing plant research programs through UAS and SfM.

Dealing with systematic laser scanner errors due to misalignment at area-based deformation analyses

NASA Astrophysics Data System (ADS)

Holst, Christoph; Medić, Tomislav; Kuhlmann, Heiner

2018-04-01

The ability to acquire rapid, dense and high quality 3D data has made terrestrial laser scanners (TLS) a desirable instrument for tasks demanding a high geometrical accuracy, such as geodetic deformation analyses. However, TLS measurements are influenced by systematic errors due to internal misalignments of the instrument. The resulting errors in the point cloud might exceed the magnitude of random errors. Hence, it is important to assure that the deformation analysis is not biased by these influences. In this study, we propose and evaluate several strategies for reducing the effect of TLS misalignments on deformation analyses. The strategies are based on the bundled in-situ self-calibration and on the exploitation of two-face measurements. The strategies are verified analyzing the deformation of the Onsala Space Observatory's radio telescope's main reflector. It is demonstrated that either two-face measurements as well as the in-situ calibration of the laser scanner in a bundle adjustment improve the results of deformation analysis. The best solution is gained by a combination of both strategies.

Damage Detection for Historical Architectures Based on Tls Intensity Data

NASA Astrophysics Data System (ADS)

Li, Q.; Cheng, X.

2018-04-01

TLS (Terrestrial Laser Scanner) has long been preferred in the cultural heritage field for 3D documentation of historical sites thanks to its ability to acquire the geometric information without any physical contact. Besides the geometric information, most TLS systems also record the intensity information, which is considered as an important measurement of the spectral property of the scanned surface. Recent studies have shown the potential of using intensity for damage detection. However, the original intensity is affected by scanning geometry such as range and incidence angle and other factors, thus making the results less accurate. Therefore, in this paper, we present a method to detect certain damage areas using the corrected intensity data. Firstly, two data-driven models have been developed to correct the range and incidence angle effect. Then the corrected intensity is used to generate 2D intensity images for classification. After the damage areas being detected, they are re-projected to the 3D point cloud for better visual representation and further investigation. The experiment results indicate the feasibility and validity of the corrected intensity for damage detection.

Permanent 3D laser scanning system for an active landslide in Gresten (Austria)

NASA Astrophysics Data System (ADS)

Canli, Ekrem; Höfle, Bernhard; Hämmerle, Martin; Benni, Thiebes; Glade, Thomas

2015-04-01

Terrestrial laser scanners (TLS) have widely been used for high spatial resolution data acquisition of topographic features and geomorphic analyses. Existing applications encompass different landslides including rockfall, translational or rotational landslides, debris flow, but also coastal cliff erosion, braided river evolution or river bank erosion. The main advantages of TLS are (a) the high spatial sampling density of XYZ-measurements (e.g. 1 point every 2-3 mm at 10 m distance), particularly in comparison with the low data density monitoring techniques such as GNSS or total stations, (b) the millimeter accuracy and precision of the range measurement to centimeter accuracy of the final DEM, and (c) the highly dense area-wide scanning that enables to look through vegetation and to measure bare ground. One of its main constraints is the temporal resolution of acquired data due to labor costs and time requirements for field campaigns. Thus, repetition measurements are generally performed only episodically. However, for an increased scientific understanding of the processes as well as for early warning purposes, we present a novel permanent 3D monitoring setup to increase the temporal resolution of TLS measurements. This accounts for different potential monitoring deliverables such as volumetric calculations, spatio-temporal movement patterns, predictions and even alerting. This system was installed at the active Salcher landslide in Gresten (Austria) that is situated in the transition zone of the Gresten Klippenbelt (Helvetic) and the Flyschzone (Penninic). The characteristic lithofacies are the Gresten Beds of Early Jurassic age that are covered by a sequence of marly and silty beds with intercalated sandy limestones. Permanent data acquisition can be implemented into our workflow with any long-range TLS system offering fully automated capturing. We utilize an Optech ILRIS-3D scanner. The time interval between two scans is currently set to 24 hours, but can be set as low as a full scan requires. The field of view (FoV) from the fixed scanner position covers most of the active landslide surface (with a maximum distance of 300 m). To initiate the scan acquisition, command line tools are run automatically on an attached notebook computer in the given time interval. The acquired 3D point cloud (including signal intensity recordings) are then sent to a server via automatic internet transfer. Each new point cloud is automatically compared with an initial 'zero' survey. Furthermore, highly detailed reference surveys are performed several times per year with the most recent Riegl VZ-6000 scanner from multiple scan positions in order to provide high quality independent ground truth. The change detection is carried out by fully automatic batch processing without the need for manual interaction. One of the applied change detection approaches is the M3C2 algorithm (Multiscale Model to Model Cloud Comparison) which is available as open source software. The field site in Gresten also contains different other monitoring systems such as inclinometers and piezometers that complement in the interpretation of the obtained TLS data. Future analysis will include the combination of surface movement with subsurface hydrology as well as with climatic data obtained from an on-site climatic station.

Application of Structure-from-Motion photogrammetry in laboratory flumes

NASA Astrophysics Data System (ADS)

Morgan, Jacob A.; Brogan, Daniel J.; Nelson, Peter A.

2017-01-01

Structure-from-Motion (SfM) photogrammetry has become widely used for topographic data collection in field and laboratory studies. However, the relative performance of SfM against other methods of topographic measurement in a laboratory flume environment has not been systematically evaluated, and there is a general lack of guidelines for SfM application in flume settings. As the use of SfM in laboratory flume settings becomes more widespread, it is increasingly critical to develop an understanding of how to acquire and process SfM data for a given flume size and sediment characteristics. In this study, we: (1) compare the resolution and accuracy of SfM topographic measurements to terrestrial laser scanning (TLS) measurements in laboratory flumes of varying physical dimensions containing sediments of varying grain sizes; (2) explore the effects of different image acquisition protocols and data processing methods on the resolution and accuracy of topographic data derived from SfM techniques; and (3) provide general guidance for image acquisition and processing for SfM applications in laboratory flumes. To investigate the effects of flume size, sediment size, and photo overlap on the density and accuracy of SfM data, we collected topographic data using both TLS and SfM in five flumes with widths ranging from 0.22 to 6.71 m, lengths ranging from 9.14 to 30.48 m, and median sediment sizes ranging from 0.2 to 31 mm. Acquisition time, image overlap, point density, elevation data, and computed roughness parameters were compared to evaluate the performance of SfM against TLS. We also collected images of a pan of gravel where we varied the distance and angle between the camera and sediment in order to explore how photo acquisition affects the ability to capture grain-scale microtopographic features in SfM-derived point clouds. A variety of image combinations and SfM software package settings were also investigated to determine optimal processing techniques. Results from this study suggest that SfM provides topographic data of similar accuracy to TLS, at higher resolution and lower cost. We found that about 100pixels per grain are required to resolve grain-scale topography. We suggest protocols for image acquisition and SfM software settings to achieve best results when using SfM in laboratory settings. In general, convergent imagery, taken from a higher angle, with at least several overlapping images for each desired point in the flume will result in an acceptable point cloud.

Virtual Reconstruction of Lost Architectures: from the Tls Survey to AR Visualization

NASA Astrophysics Data System (ADS)

Quattrini, R.; Pierdicca, R.; Frontoni, E.; Barcaglioni, R.

2016-06-01

The exploitation of high quality 3D models for dissemination of archaeological heritage is currently an investigated topic, although Mobile Augmented Reality platforms for historical architecture are not available, allowing to develop low-cost pipelines for effective contents. The paper presents a virtual anastylosis, starting from historical sources and from 3D model based on TLS survey. Several efforts and outputs in augmented or immersive environments, exploiting this reconstruction, are discussed. The work demonstrates the feasibility of a 3D reconstruction approach for complex architectural shapes starting from point clouds and its AR/VR exploitation, allowing the superimposition with archaeological evidences. Major contributions consist in the presentation and the discussion of a pipeline starting from the virtual model, to its simplification showing several outcomes, comparing also the supported data qualities and advantages/disadvantages due to MAR and VR limitations.

Assessment of a Static Multibeam Sonar Scanner for 3d Surveying in Confined Subaquatic Environments

NASA Astrophysics Data System (ADS)

Moisan, E.; Charbonnier, P.; Foucher, P.; Grussenmeyer, P.; Guillemin, S.; Samat, O.; Pagès, C.

2016-06-01

Mechanical Scanning Sonar (MSS) is a promising technology for surveying underwater environments. Such devices are comprised of a multibeam echosounder attached to a pan & tilt positioner, that allows sweeping the scene in a similar way as Terrestrial Laser Scanners (TLS). In this paper, we report on the experimental assessment of a recent MSS, namely, the BlueView BV5000, in a confined environment: lock number 50 on the Marne-Rhin canal (France). To this aim, we hung the system upside-down to scan the lock chamber from the surface, which allows surveying the scanning positions, up to an horizontal orientation. We propose a geometric method to estimate the remaining angle and register the scans in a coordinate system attached to the site. After reviewing the different errors that impair sonar data, we compare the resulting point cloud to a TLS model that was acquired the day before, while the lock was completely empty for maintenance. While the results exhibit a bias that can be partly explained by an imperfect setup, the maximum difference is less than 15 cm, and the standard deviation is about 3.5 cm. Visual inspection shows that coarse defects of the masonry, such as stone lacks or cavities, can be detected in the MSS point cloud, while smaller details, e.g. damaged joints, are harder to notice.

Comparison of Terrestrial Laser Scanning (TLS) and Structure from Motion (SfM) photogrammetry from unmanned aerial systems (UAS) for geomorphic change detection in beach-dune systems.

NASA Astrophysics Data System (ADS)

Heathfield, D.; Walker, I. J.; Grilliot, M. J.

2016-12-01

The recent emergence of terrestrial laser scanning (TLS) and unmanned aerial systems (UAS) as mapping platforms in geomorphology research has allowed for expedited acquisition of high spatial and temporal resolution, three-dimensional topographic datasets. TLS provides dense 3D `point cloud' datasets that require careful acquisition strategies and appreciable post-processing to produce accurate digital elevation models (DEMs). UAS provide overlapping nadir and oblique imagery that can be analysed using Structure from Motion (SfM) photogrammetry software to provide accurate, high-resolution orthophoto mosaics and accurate digital surface models (DSMs). Both methods yield centimeter to decimeter scale accuracy, depending on various hardware and field acquisition considerations (e.g., camera resolution, flight height, on-site GNSS control, etc.). Combined, the UAS-SfM workflow provides a comparable and more affordable solution to the more expensive TLS or aerial LiDAR methods. This paper compares and contrasts SfM and TLS survey methodologies and related workflow costs and benefits as used to quantify and examine seasonal beach-dune erosion and recovery processes at a site (Calvert Island) on British Columbia's central coast in western Canada. Seasonal SfM- and TLS-derived DEMs were used to quantify spatial patterns of surface elevation change, geomorphic responses, and related significant sediment volume changes. Cluster maps of positive (depositional) and negative (erosional) change are analysed to detect and interpret the geomorphic and sediment budget responses following an erosive water level event during winter 2016 season (Oct. 2015 - Apr. 2016). Vantage cameras also provided qualitative data on the frequency and magnitude of environmental drivers (e.g., tide, wave, wind forcing) of erosion and deposition events during the observation period. In addition, we evaluate the costs, time expenditures, and accuracy considerations for both SfM and TLS methodologies.

Accurate 3D point cloud comparison and volumetric change analysis of Terrestrial Laser Scan data in a hard rock coastal cliff environment

NASA Astrophysics Data System (ADS)

Earlie, C. S.; Masselink, G.; Russell, P.; Shail, R.; Kingston, K.

2013-12-01

Our understanding of the evolution of hard rock coastlines is limited due to the episodic nature and ';slow' rate at which changes occur. High-resolution surveying techniques, such as Terrestrial Laser Scanning (TLS), have just begun to be adopted as a method of obtaining detailed point cloud data to monitor topographical changes over short periods of time (weeks to months). However, the difficulties involved in comparing consecutive point cloud data sets in a complex three-dimensional plane, such as occlusion due to surface roughness and positioning of data capture point as a result of a consistently changing environment (a beach profile), mean that comparing data sets can lead to errors in the region of 10 - 20 cm. Meshing techniques are often used for point cloud data analysis for simple surfaces, but in surfaces such as rocky cliff faces, this technique has been found to be ineffective. Recession rates of hard rock coastlines in the UK are typically determined using aerial photography or airborne LiDAR data, yet the detail of the important changes occurring to the cliff face and toe are missed using such techniques. In this study we apply an algorithm (M3C2 - Multiscale Model to Model Cloud Comparison), initially developed for analysing fluvial morphological change, that directly compares point to point cloud data using surface normals that are consistent with surface roughness and measure the change that occurs along the normal direction (Lague et al., 2013). The surfaces changes are analysed using a set of user defined scales based on surface roughness and registration error. Once the correct parameters are defined, the volumetric cliff face changes are calculated by integrating the mean distance between the point clouds. The analysis has been undertaken at two hard rock sites identified for their active erosion located on the UK's south west peninsular at Porthleven in south west Cornwall and Godrevy in north Cornwall. Alongside TLS point cloud data, in-situ measurements of the nearshore wave climate, using a pressure transducer, offshore wave climate from a directional wavebuoy, and rainfall records from nearby weather stations were collected. Combining beach elevation information from the georeferenced point clouds with a continuous time series of wave climate provides an indication of the variation in wave energy delivered to the cliff face. The rates of retreat were found to agree with the existing rates that are currently used in shoreline management. The additional geotechnical detail afforded by applying the M3C2 method to a hard rock environment provides not only a means of obtaining volumetric changes with confidence, but also a clear illustration of the locations of failure on the cliff face. Monthly cliff scans help to narrow down the timings of failure under energetic wave conditions or periods of heavy rainfall. Volumetric changes and sensitive regions to failure established using this method allows us to capture episodic changes to the cliff face at a high resolution (1 - 2 cm) that are otherwise missed using lower resolution techniques typically used for shoreline management, and to understand in greater detail the geotechnical behaviour of hard rock cliffs and determine rates of erosion with greater accuracy.

Terrain Extraction by Integrating Terrestrial Laser Scanner Data and Spectral Information

NASA Astrophysics Data System (ADS)

Lau, C. L.; Halim, S.; Zulkepli, M.; Azwan, A. M.; Tang, W. L.; Chong, A. K.

2015-10-01

The extraction of true terrain points from unstructured laser point cloud data is an important process in order to produce an accurate digital terrain model (DTM). However, most of these spatial filtering methods just utilizing the geometrical data to discriminate the terrain points from nonterrain points. The point cloud filtering method also can be improved by using the spectral information available with some scanners. Therefore, the objective of this study is to investigate the effectiveness of using the three-channel (red, green and blue) of the colour image captured from built-in digital camera which is available in some Terrestrial Laser Scanner (TLS) for terrain extraction. In this study, the data acquisition was conducted at a mini replica landscape in Universiti Teknologi Malaysia (UTM), Skudai campus using Leica ScanStation C10. The spectral information of the coloured point clouds from selected sample classes are extracted for spectral analysis. The coloured point clouds which within the corresponding preset spectral threshold are identified as that specific feature point from the dataset. This process of terrain extraction is done through using developed Matlab coding. Result demonstrates that a higher spectral resolution passive image is required in order to improve the output. This is because low quality of the colour images captured by the sensor contributes to the low separability in spectral reflectance. In conclusion, this study shows that, spectral information is capable to be used as a parameter for terrain extraction.

Multiseasonal Tree Crown Structure Mapping with Point Clouds from OTS Quadrocopter Systems

NASA Astrophysics Data System (ADS)

Hese, S.; Behrendt, F.

2017-08-01

OTF (Off The Shelf) quadro copter systems provide a cost effective (below 2000 Euro), flexible and mobile platform for high resolution point cloud mapping. Various studies showed the full potential of these small and flexible platforms. Especially in very tight and complex 3D environments the automatic obstacle avoidance, low copter weight, long flight times and precise maneuvering are important advantages of these small OTS systems in comparison with larger octocopter systems. This study examines the potential of the DJI Phantom 4 pro series and the Phantom 3A series for within-stand and forest tree crown 3D point cloud mapping using both within stand oblique imaging in different altitude levels and data captured from a nadir perspective. On a test site in Brandenburg/Germany a beach crown was selected and measured with 3 different altitude levels in Point Of Interest (POI) mode with oblique data capturing and deriving one nadir mosaic created with 85/85 % overlap using Drone Deploy automatic mapping software. Three different flight campaigns were performed, one in September 2016 (leaf-on), one in March 2017 (leaf-off) and one in May 2017 (leaf-on) to derive point clouds from different crown structure and phenological situations - covering the leaf-on and leafoff status of the tree crown. After height correction, the point clouds where used with GPS geo referencing to calculate voxel based densities on 50 × 10 × 10 cm voxel definitions using a topological network of chessboard image objects in 0,5 m height steps in an object based image processing environment. Comparison between leaf-off and leaf-on status was done on volume pixel definitions comparing the attributed point densities per volume and plotting the resulting values as a function of distance to the crown center. In the leaf-off status SFM (structure from motion) algorithms clearly identified the central stem and also secondary branch systems. While the penetration into the crown structure is limited in the leaf-on status (the point cloud is a mainly a description of the interpolated crown surface) - the visibility of the internal crown structure in leaf-off status allows to map also the internal tree structure up to and stopping at the secondary branch level system. When combined the leaf-on and leaf-off point clouds generate a comprehensive tree crown structure description that allows a low cost and detailed 3D crown structure mapping and potentially precise biomass mapping and/or internal structural differentiation of deciduous tree species types. Compared to TLS (Terrestrial Laser Scanning) based measurements the costs are neglectable and in the range of 1500-2500 €. This suggests the approach for low cost but fine scale in-situ applications and/or projects where TLS measurements cannot be derived and for less dense forest stands where POI flights can be performed. This study used the in-copter GPS measurements for geo referencing. Better absolute geo referencing results will be obtained with DGPS reference points. The study however clearly demonstrates the potential of OTS very low cost copter systems and the image attributed GPS measurements of the copter for the automatic calculation of complex 3D point clouds in a multi temporal tree crown mapping context.

D Surveying and Geometric Assessment of a Gothic Nave Vaulting from Point Clouds

NASA Astrophysics Data System (ADS)

Costa-Jover, A.; Ginovart, J. Lluis i.; Coll-Pla, S.; López Piquer, M.; Samper-Sosa, A.; Moreno García, D.; Solís Lorenzo, A. M.

2017-02-01

The development of massive data captures techniques (MDC) in recent years, such as the Terrestrial laser Scanner (TLS), raises the possibility of developing new assessment procedures for architectural heritage. The 3D models that it is able to obtain is a great potential tool, both for conservation purposes and for historical and architectural studies. The paper proposes a simple, non-invasive methodology for the assessment of masonry vaults from point clouds which makes it possible to obtain relevant data about the formal anomalies. The methodology is tested in Tortosa's Gothic Cathedral's vaults, where the geometrical differences between vaults, a priori equal, are identified and related with the partially known construction phases. The procedure can be easily used on any other vaulted construction of any kind, but is especially useful to deal with the complex geometry of Gothic masonry vaults.

Detection of morphological changes in cliff face surrounding a waterfall using terrestrial laser scanning and unmanned aerial system

NASA Astrophysics Data System (ADS)

Hayakawa, Yuichi S.; Obanawa, Hiroyuki

2015-04-01

Waterfall or bedrock knickpoint appears as an erosional front in bedrock rivers forming deep v-shaped valley downstream. Following the rapid fluvial erosion of waterfall, rockfalls and gravita-tional collapses often occur in surrounding steep cliffs. Although morphological changes of such steep cliffs are sometimes visually observed, quantitative and precise measurements of their spatio-temporal distribution have been limited due to the difficulties in direct access to such cliffs if with classical measurement methods. However, for the clarification of geomorphological processes oc-curring in the cliffs, multi-temporal mapping of the cliff face at a high resolution is necessary. Re-mote sensing approaches are therefore suitable for the topographic measurements and detection of changes in such inaccessible cliffs. To achieve accurate topographic mapping of cliffs around a wa-terfall, here we perform multi-temporal terrestrial laser scanning (TLS), as well as structure-from-motion multi-view stereo (SfM-MVS) photogrammetry based on unmanned aerial system (UAS). The study site is Kegon Falls in central Japan, having a vertical drop of surface water from top of its overhanging cliff, as well as groundwater outflows from its lower portions. The bedrock is composed of alternate layers of andesite lava and conglomerates. Minor rockfalls in the cliffs are often ob-served by local people. The latest major rockfall occurred in 1986, causing ca. 8-m upstream propa-gation of the waterfall lip. This provides a good opportunity to examine the changes in the surround-ing cliffs following the waterfall recession. Multi-time point clouds were obtained by TLS measure-ment over years, and the three-dimensional changes of the rock surface were detected, uncovering the locus of small rockfalls and gully developments. Erosion seems particularly frequent in relatively weak the conglomerates layer, whereas small rockfalls seems to have occurred in the andesite layers. Also, shadows in the TLS point clouds are effectively filled by complementary data of UAS-based SfM-MVS photogrammetry, which can improve the mapping quality of the cliff morphology. The point clouds are also projected on a vertical plane to generate a digital elevation model (DEM). Cross-sectional profiles extracted from the DEM show the presence of a distinct, 5-10-m depression at the mid of the cliff (bottom of the upper andesite layer), which appears to have been formed by freeze-thaw and/or wet-dry weathering following the waterfall recession in 1986.

Terrestrial laser scanning point clouds time series for the monitoring of slope movements: displacement measurement using image correlation and 3D feature tracking

NASA Astrophysics Data System (ADS)

Bornemann, Pierrick; Jean-Philippe, Malet; André, Stumpf; Anne, Puissant; Julien, Travelletti

2016-04-01

Dense multi-temporal point clouds acquired with terrestrial laser scanning (TLS) have proved useful for the study of structure and kinematics of slope movements. Most of the existing deformation analysis methods rely on the use of interpolated data. Approaches that use multiscale image correlation provide a precise and robust estimation of the observed movements; however, for non-rigid motion patterns, these methods tend to underestimate all the components of the movement. Further, for rugged surface topography, interpolated data introduce a bias and a loss of information in some local places where the point cloud information is not sufficiently dense. Those limits can be overcome by using deformation analysis exploiting directly the original 3D point clouds assuming some hypotheses on the deformation (e.g. the classic ICP algorithm requires an initial guess by the user of the expected displacement patterns). The objective of this work is therefore to propose a deformation analysis method applied to a series of 20 3D point clouds covering the period October 2007 - October 2015 at the Super-Sauze landslide (South East French Alps). The dense point clouds have been acquired with a terrestrial long-range Optech ILRIS-3D laser scanning device from the same base station. The time series are analyzed using two approaches: 1) a method of correlation of gradient images, and 2) a method of feature tracking in the raw 3D point clouds. The estimated surface displacements are then compared with GNSS surveys on reference targets. Preliminary results tend to show that the image correlation method provides a good estimation of the displacement fields at first order, but shows limitations such as the inability to track some deformation patterns, and the use of a perspective projection that does not maintain original angles and distances in the correlated images. Results obtained with 3D point clouds comparison algorithms (C2C, ICP, M3C2) bring additional information on the displacement fields. Displacement fields derived from both approaches are then combined and provide a better understanding of the landslide kinematics.

A Lightweight Protocol for Secure Video Streaming

PubMed Central

Morkevicius, Nerijus; Bagdonas, Kazimieras

2018-01-01

The Internet of Things (IoT) introduces many new challenges which cannot be solved using traditional cloud and host computing models. A new architecture known as fog computing is emerging to address these technological and security gaps. Traditional security paradigms focused on providing perimeter-based protections and client/server point to point protocols (e.g., Transport Layer Security (TLS)) are no longer the best choices for addressing new security challenges in fog computing end devices, where energy and computational resources are limited. In this paper, we present a lightweight secure streaming protocol for the fog computing “Fog Node-End Device” layer. This protocol is lightweight, connectionless, supports broadcast and multicast operations, and is able to provide data source authentication, data integrity, and confidentiality. The protocol is based on simple and energy efficient cryptographic methods, such as Hash Message Authentication Codes (HMAC) and symmetrical ciphers, and uses modified User Datagram Protocol (UDP) packets to embed authentication data into streaming data. Data redundancy could be added to improve reliability in lossy networks. The experimental results summarized in this paper confirm that the proposed method efficiently uses energy and computational resources and at the same time provides security properties on par with the Datagram TLS (DTLS) standard. PMID:29757988

A Lightweight Protocol for Secure Video Streaming.

PubMed

Venčkauskas, Algimantas; Morkevicius, Nerijus; Bagdonas, Kazimieras; Damaševičius, Robertas; Maskeliūnas, Rytis

2018-05-14

The Internet of Things (IoT) introduces many new challenges which cannot be solved using traditional cloud and host computing models. A new architecture known as fog computing is emerging to address these technological and security gaps. Traditional security paradigms focused on providing perimeter-based protections and client/server point to point protocols (e.g., Transport Layer Security (TLS)) are no longer the best choices for addressing new security challenges in fog computing end devices, where energy and computational resources are limited. In this paper, we present a lightweight secure streaming protocol for the fog computing "Fog Node-End Device" layer. This protocol is lightweight, connectionless, supports broadcast and multicast operations, and is able to provide data source authentication, data integrity, and confidentiality. The protocol is based on simple and energy efficient cryptographic methods, such as Hash Message Authentication Codes (HMAC) and symmetrical ciphers, and uses modified User Datagram Protocol (UDP) packets to embed authentication data into streaming data. Data redundancy could be added to improve reliability in lossy networks. The experimental results summarized in this paper confirm that the proposed method efficiently uses energy and computational resources and at the same time provides security properties on par with the Datagram TLS (DTLS) standard.

First Experiences with the Trimble SX10 Scanning Total Station for Building Facade Survey

NASA Astrophysics Data System (ADS)

Lachat, E.; Landes, T.; Grussenmeyer, P.

2017-02-01

The use of Terrestrial Laser Scanner (TLS) tends to become a solution in many research areas related to large scale surveying. Meanwhile, the technological advances combined with the investigation of user needs have brought to the design of innovative devices known as scanning total stations. Such instruments merge in a unique hardware both scanning and surveying facilities. Even if their scanning rate is often reduced compared to conventional TLS, they make it possible to directly georeference laser scanning projects and to complete them with measurements of individual points of interest. The recent Trimble SX10 which was launched on the market in early October 2016 has been tested and some experiences carried out with it are reported in this paper. The analyses mainly focus on the survey of a building facade. Next to laser scanning survey, a photogrammetry campaign using an Unmanned Aerial Vehicle (UAV) has been carried out. These different datasets are used to assess the Trimble SX10 issued point clouds through a set of comparisons. Since georeferencing is possible either directly or indirectly using this device, data processed both ways are also compared to conclude about the more reliable method.

Automatic Registration of Terrestrial Laser Scanner Point Clouds Using Natural Planar Surfaces

NASA Astrophysics Data System (ADS)

Theiler, P. W.; Schindler, K.

2012-07-01

Terrestrial laser scanners have become a standard piece of surveying equipment, used in diverse fields like geomatics, manufacturing and medicine. However, the processing of today's large point clouds is time-consuming, cumbersome and not automated enough. A basic step of post-processing is the registration of scans from different viewpoints. At present this is still done using artificial targets or tie points, mostly by manual clicking. The aim of this registration step is a coarse alignment, which can then be improved with the existing algorithm for fine registration. The focus of this paper is to provide such a coarse registration in a fully automatic fashion, and without placing any target objects in the scene. The basic idea is to use virtual tie points generated by intersecting planar surfaces in the scene. Such planes are detected in the data with RANSAC and optimally fitted using least squares estimation. Due to the huge amount of recorded points, planes can be determined very accurately, resulting in well-defined tie points. Given two sets of potential tie points recovered in two different scans, registration is performed by searching for the assignment which preserves the geometric configuration of the largest possible subset of all tie points. Since exhaustive search over all possible assignments is intractable even for moderate numbers of points, the search is guided by matching individual pairs of tie points with the help of a novel descriptor based on the properties of a point's parent planes. Experiments show that the proposed method is able to successfully coarse register TLS point clouds without the need for artificial targets.

Examination of the Potential of Structure-from-Motion (SfM) Photogrammetry and Terrestrial Laser Scanning (TLS) for Rapid Nondestructive Field Measurement of Grass Biomass

NASA Astrophysics Data System (ADS)

Cooper, S. D.; Roy, D. P.; Sathyachandran, S. K.

2016-12-01

Quantifying the above ground biomass of grasslands is needed for a number of applications including monitoring grass productivity, wildlife habitat, carbon storage, and fuel bed characteristics. Destructive biomass measurements, although highly accurate, are time consuming and are not easily undertaken on a repeat basis or over large areas. A number of non-destructive techniques have been developed that relate vegetation structural properties to above ground biomass. Conventionally, the disc pasture meter is used for rapid grass biomass estimation and uses the settling height of a disk placed on the grass and allometry. Structure-from-Motion (SfM) photogrammetry and Terrestrial Laser Scanning (TLS) are two technologies that have the potential to yield highly precise three-dimensional (3D) structural measurements of vegetation quite rapidly. Recent advances in computing and data acquisition technologies have led to the successful application of TLS and SfM in woody biomass estimation, but application in grassland systems remains largely untested. The Canopy Biomass Lidar (CBL) is one such advance and is a highly portable and relatively inexpensive TLS unit allowing for rapid and widespread data collection. We investigated the efficacy of a CBL unit as well as SfM in allometric estimation of grassland biomass from volumetric measurements derived from these two technologies, both separately and through the merging of the two independently generated 3D point clouds. The results are compared to biomass estimation from a pasture disc meter. Best use practices for grassland applications of these technologies are also presented.

Outcrop-scale fracture trace identification using surface roughness derived from a high-density point cloud

NASA Astrophysics Data System (ADS)

Okyay, U.; Glennie, C. L.; Khan, S.

2017-12-01

Owing to the advent of terrestrial laser scanners (TLS), high-density point cloud data has become increasingly available to the geoscience research community. Research groups have started producing their own point clouds for various applications, gradually shifting their emphasis from obtaining the data towards extracting more and meaningful information from the point clouds. Extracting fracture properties from three-dimensional data in a (semi-)automated manner has been an active area of research in geosciences. Several studies have developed various processing algorithms for extracting only planar surfaces. In comparison, (semi-)automated identification of fracture traces at the outcrop scale, which could be used for mapping fracture distribution have not been investigated frequently. Understanding the spatial distribution and configuration of natural fractures is of particular importance, as they directly influence fluid-flow through the host rock. Surface roughness, typically defined as the deviation of a natural surface from a reference datum, has become an important metric in geoscience research, especially with the increasing density and accuracy of point clouds. In the study presented herein, a surface roughness model was employed to identify fracture traces and their distribution on an ophiolite outcrop in Oman. Surface roughness calculations were performed using orthogonal distance regression over various grid intervals. The results demonstrated that surface roughness could identify outcrop-scale fracture traces from which fracture distribution and density maps can be generated. However, considering outcrop conditions and properties and the purpose of the application, the definition of an adequate grid interval for surface roughness model and selection of threshold values for distribution maps are not straightforward and require user intervention and interpretation.

Mass movements of lowland areas in long range TLS and ALS monitoring

NASA Astrophysics Data System (ADS)

Tyszkowski, Sebastian

2015-04-01

The development of geodynamic processes in lowland areas remains an interesting issue for geomorphology and geology as well as civil engineering. Landslides, slumps, slope washes, rills and gully erosion are considered both geomorphological processes and natural hazards. In order to know precisely their origin and development, it is crucial to determine the rate and direction of their change. Previously such studies used geodesy and photogrammetry but the recent progress in the LiDAR technology allows collecting the data in a wider range and comparable or higher precision than most of geodetic methods. Airborne Laser Scanning (ALS) is also a good tool, but high costs and low frequency of the surveys make it difficult to trace the dynamics of the studied phenomena and processes. Nevertheless, this method enables gathering information from large areas, which is useful for the preliminary identification of the research issues and nomination of the areas for subsequent case studies. It is, however, more common to use Terrestrial Laser Scanning (TLS) for the detailed studies of morphology and its change. This method provides mobility and high accuracy, and enables frequent measurements. The problem in the analysis of many geoprocesses lies in the limited range of this method. This study concerns the Lower Vistula Valley located in northern Poland. It presents the results of measurements of landslides located in the escarpment zone of a big river valley. The object of the studies is mass movements developing within the quaternary deposits on the valley slopes. These processes were monitored in previous years with the traditional survey methods, mainly based on the geodesy field observations (benchmark) as well as the analyses of historical maps and archives. The ALS method used during the study enabled gathering the data on the valley with the density of 8 points per sq m, which provided the background for the consecutive monitoring study. In the surveys a terrestrial scanner Riegl VZ-4000 was applied. This TLS scanner has a very long range of up to 4000 m. The TLS scan positions were located from 0.5 km to 2-3 km from the research objects (depending on the position), on the opposite river bank or valley side. A point cloud of three to four scan positions was made for each landslide. The scans were performed at a maximum resolution of 0.002°. During the merging of each point cloud the Riegl Multi Station Adjustment tool was used for the automatic fine adjustment and alignment. The scan positions and georeferences were registered using the global coordinates with an integrated RTK GPS receiver. After three campaigns based on the collected data from the ALS and TLS scanning and previous filtration a digital terrain model was created. The obtained model was compared in the GIS software in order to assess the changes in the terrain morphology resulting from the geodynamic processes. This study was supported by the Virtual Institute of Integrated Climate and Landscape Evolution (ICLEA) of the Helmholtz Association.

A 3D clustering approach for point clouds to detect and quantify changes at a rock glacier front

NASA Astrophysics Data System (ADS)

Micheletti, Natan; Tonini, Marj; Lane, Stuart N.

2016-04-01

Terrestrial Laser Scanners (TLS) are extensively used in geomorphology to remotely-sense landforms and surfaces of any type and to derive digital elevation models (DEMs). Modern devices are able to collect many millions of points, so that working on the resulting dataset is often troublesome in terms of computational efforts. Indeed, it is not unusual that raw point clouds are filtered prior to DEM creation, so that only a subset of points is retained and the interpolation process becomes less of a burden. Whilst this procedure is in many cases necessary, it implicates a considerable loss of valuable information. First, and even without eliminating points, the common interpolation of points to a regular grid causes a loss of potentially useful detail. Second, it inevitably causes the transition from 3D information to only 2.5D data where each (x,y) pair must have a unique z-value. Vector-based DEMs (e.g. triangulated irregular networks) partially mitigate these issues, but still require a set of parameters to be set and a considerable burden in terms of calculation and storage. Because of the reasons above, being able to perform geomorphological research directly on point clouds would be profitable. Here, we propose an approach to identify erosion and deposition patterns on a very active rock glacier front in the Swiss Alps to monitor sediment dynamics. The general aim is to set up a semiautomatic method to isolate mass movements using 3D-feature identification directly from LiDAR data. An ultra-long range LiDAR RIEGL VZ-6000 scanner was employed to acquire point clouds during three consecutive summers. In order to isolate single clusters of erosion and deposition we applied the Density-Based Scan Algorithm with Noise (DBSCAN), previously successfully employed by Tonini and Abellan (2014) in a similar case for rockfall detection. DBSCAN requires two input parameters, strongly influencing the number, shape and size of the detected clusters: the minimum number of points (i) at a maximum distance (ii) around each core-point. Under this condition, seed points are said to be density-reachable by a core point delimiting a cluster around it. A chain of intermediate seed-points can connect contiguous clusters allowing clusters of arbitrary shape to be defined. The novelty of the proposed approach consists in the implementation of the DBSCAN 3D-module, where the xyz-coordinates identify each point and the density of points within a sphere is considered. This allows detecting volumetric features with a higher accuracy, depending only on actual sampling resolution. The approach is truly 3D and exploits all TLS measurements without the need of interpolation or data reduction. Using this method, enhanced geomorphological activity during the summer of 2015 in respect to the previous two years was observed. We attribute this result to the exceptionally high temperatures of that summer, which we deem responsible for accelerating the melting process at the rock glacier front and probably also increasing creep velocities. References: - Tonini, M. and Abellan, A. (2014). Rockfall detection from terrestrial LiDAR point clouds: A clustering approach using R. Journal of Spatial Information Sciences. Number 8, pp95-110 - Hennig, C. Package fpc: Flexible procedures for clustering. https://cran.r-project.org/web/packages/fpc/index.html, 2015. Accessed 2016-01-12.

Stability of Molasse: TLS for structural analysis in the valley of Gotteron-Fribourg, Switzerland

NASA Astrophysics Data System (ADS)

Ben Hammouda, Mariam; Jaboyedoff, Michel; Derron, Marc Henri; Bouaziz, Samir; Mazotti, Benoit

2016-04-01

The marine molasses of Fribourg (Switzerland) is an area where the cliff collapses and rockfalls are quite frequent and difficult to predict due to this particular lithology, a poorly consolidated greywacke. Because of some recent rockfall events, the situation became critical especially in the valley of Gotteron where a big block has slightly moved down and might destroy a house in case of rupture. The cliff made of jointed sandstone and thin layers of clay and siltstone presents many fractures, joints and massive cross bedding surfaces which increases the possibility of slab failure. This paper presents a detailed structural analysis of the cliff and the identification of the potential failure mechanisms. The methodology is about combining field observation and terrestrial LiDAR scanning point cloud in order to assess the stability of potential slope instabilities of molasses. Three LiDAR scans were done i) to extract discontinuity families depending to the dip and the dip direction of joints and ii) to run kinematic tests in order to identify responsible sets for each potential failure mechanisms. Raw point clouds were processed using IMAlign module of Polyworks and CloudCompare software. The structural analysis based on COLTOP 3D (Jaboyedoff et al. 2007) allowed the identification of four discontinuity sets that were not measured in the field. Two different failure mechanisms have been identified as critical: i) planar sliding which is the main responsible mechanism of the present fallen block and ii) wedge sliding. The planar sliding is defined by the discontinuity sets J1 and J5 with a direction parallel to the slope and with a steep dip angle. The wedges, defined by couples of discontinuity sets, contribute to increase cracks' opening and to the detachment of slabs. The use of TLS combined with field survey provides us a first interpretation of instabilities and a very promising structural analysis.

Integration of Geodata in Documenting Castle Ruins

NASA Astrophysics Data System (ADS)

Delis, P.; Wojtkowska, M.; Nerc, P.; Ewiak, I.; Lada, A.

2016-06-01

Textured three dimensional models are currently the one of the standard methods of representing the results of photogrammetric works. A realistic 3D model combines the geometrical relations between the structure's elements with realistic textures of each of its elements. Data used to create 3D models of structures can be derived from many different sources. The most commonly used tool for documentation purposes, is a digital camera and nowadays terrestrial laser scanning (TLS). Integration of data acquired from different sources allows modelling and visualization of 3D models historical structures. Additional aspect of data integration is possibility of complementing of missing points for example in point clouds. The paper shows the possibility of integrating data from terrestrial laser scanning with digital imagery and an analysis of the accuracy of the presented methods. The paper describes results obtained from raw data consisting of a point cloud measured using terrestrial laser scanning acquired from a Leica ScanStation2 and digital imagery taken using a Kodak DCS Pro 14N camera. The studied structure is the ruins of the Ilza castle in Poland.

Estimating small-scale roughness of a rock joint using TLS data

NASA Astrophysics Data System (ADS)

Bitenc, Maja; Kieffer, D. Scott; Khoshelham, Kourosh

2016-04-01

Roughness of a rock joint is an important parameter influencing rock mass stability. Besides the surface amplitude, also the roughness direction- and scale-dependency should be observed (i.e. 3D roughness). Up to now most of roughness measurements and parameters rely on point or profile data obtained on small samples, mostly in a laboratory. State-of-the-art remote sensing technologies supply 3D measurements of an in-situ rock surface and therefore enable a 3D roughness parameterization. Detailed morphology of a remote large-scale vertical structure can be best observed by Terrestrial Laser Scanning (TLS). In a short time and from distances of a few hundred meters, TLS provides relatively dense and precise point cloud. Sturzenegger and Stead [2009] showed that the TLS technology and careful fieldwork allow the extraction of first-order roughness profiles, i.e. the surface irregularities with a wavelength greater than about 10 cm. Our goal is to find the lower limit; this is, to define the smallest discernible detail, and appropriate measuring and processing steps to extract this detail from the TLS data. The smallest observable roughness amplitude depends on the TLS data precision, which is limited mostly by an inherent range error (noise). An influence of the TLS noise on the rock joint roughness was analyzed using highly precise reference data acquired by Advanced TOpometric Sensor (ATOS) on a 20x30 cm rock joint sample. ATOS data were interpolated into 1 mm grid, to which five levels (0.5, 1, 1.5, 2, 2.5 mm) of normally distributed noise were added. The 3D surfaces entered direction-dependent roughness parameter computation after Grasselli [2001]. Average roughness of noisy surfaces logarithmically increase with the noise level and is already doubled for 1 mm noise. Performing Monte Carlo simulation roughness parameter noise sensitivity was investigated. Distribution of roughness differences (roughness of noisy surfaces minus roughness of reference ATOS surface) is approximately normal. Standard deviation of differences on average slightly increases with the noise level, but is strongly dependent on the analysis direction. As proved by different researches within the field of signal, image and also TLS data processing, noise can be, to a certain extent, removed by a post-processing step called denoising. In this research, four denoising methods, namely discrete WT (DWT) and stationary WT (SWT), and classic NLM (NLM) and probabilistic NLM (PNLM), were used on noisy ATOS data. Results were compared based on the (i) height and (ii) roughness differences between denoised surfaces and reference ATOS surface, (iii) the peak signal-to-noise ratio (PSNR) and (iv) the visual check of denoised surface. Increased PSNRs and reduced roughness differences prove the importance of the TLS data denoising procedure. In case of SWT, NLM and PNLM the surface is mostly over smoothed, whereas in case of DWT some noise remains. References: - Grasselli, G. (2001). Shear strength of rock joints based on quantified surface description. École Polytechnique Fédérale de Lausanne. Lausanne, EPFL. - Sturzenegger, M. and D. Stead (2009). "Close-range terrestrial digital photogrammetry and terrestrial laser scanning for discontinuity characterization on rock cuts." Engineering Geology 106(3-4): 163-182.

Application of terrestrial photogrammetry for the mass balance calculation on Montasio Occidentale Glacier (Julian Alps, Italy)

NASA Astrophysics Data System (ADS)

Piermattei, Livia; Carturan, Luca; Calligaro, Simone; Blasone, Giacomo; Guarnieri, Alberto; Tarolli, Paolo; Dalla Fontana, Giancarlo; Vettore, Antonio

2014-05-01

Digital elevation models (DEMs) of glaciated terrain are commonly used to measure changes in geometry and hence infer the mass balance of glaciers. Different tools and methods exist to obtain information about the 3D geometry of terrain. Recent improvements on the quality and performance of digital cameras for close-range photogrammetry, and the development of automatic digital photogrammetric processing makes the 'structure from motion' photogrammetric technique (SfM) competitive for high quality 3D models production, compared to efficient but also expensive and logistically-demanding survey technologies such as airborn and terrestrial laser scanner (TLS). The purpose of this work is to test the SfM approach, using a consumer-grade SLR camera and the low-cost computer vision-based software package Agisoft Photoscan (Agisoft LLC), to monitor the mass balance of Montasio Occidentale glacier, a 0.07km2, low-altitude, debris-covered glacier located in the Eastern Italian Alps. The quality of the 3D models produced by the SfM process has been assessed by comparison with digital terrain models obtained through TLS surveys carried out at the same dates. TLS technique has indeed proved to be very effective in determining the volume change of this glacier in the last years. Our results shows that the photogrammetric approach can produce point cloud densities comparable to those derived from TLS measurements. Furthermore, the horizontal and vertical accuracies are also of the same order of magnitude as for TLS (centimetric to decimetric). The effect of different landscape characteristics (e.g. distance from the camera or terrain gradient) and of different substrata (rock, debris, ice, snow and firn) was also evaluated in terms of SfM reconstruction's accuracy vs. TLS. Given the good results obtained on the Montasio Occidentale glacier, it can be concluded that the terrestrial photogrammetry, with the advantageous features of portability, ease of use and above all low costs, allows to obtain high-resolution DEMs which enable good mass balance estimations on glaciers with similar characteristics.

Drone based structural mapping at Holuhraun indicates fault reactivation and complexity

NASA Astrophysics Data System (ADS)

Mueller, Daniel; Walter, Thomas R.; Steinke, Bastian; Witt, Tanja; Schoepa, Anne; Duerig, Tobi; Gudmundsson, Magnus T.

2016-04-01

Accompanied by an intense seismic swarm in August 2014, a dike laterally formed, starting under Icelands Vatnajökull glacier, propagating over a distance of more than 45 km within only two weeks, leading to the largest eruption by volume since the 1783-84 Laki eruption. Along its propagation path, the dike caused intense surface displacements up to meters. Based on seismicity, GPS and InSAR, the propagation has already been analysed and described as segmented lateral dike growth. We now focus on few smaller regions of the dike. We consider the Terrasar-X tandem digital elevation map and aerial photos and find localized zones where structural fissures formed and curved. At these localized, regions we performed a field campaign in summer 2015, applying the close range remote sensing techniques Structure from Motion (SfM) and Terrestrial Laser Scanning (TLS). Over 4 TLS scan were collected, along with over 5,000 aerial images. Point clouds from SfM and TLS are merged and compared, and local structural lineaments analysed. As a result, we obtained an unprecedentedly high-resolution digital elevation map. With this map, we analyse the structural expression of the fissure eruption at the surface and improve understanding on the conditions that influenced the magma propagation path. We elaborate scenarios that lead to complexities of the surface structures and the link to the underlying dike intrusion.

Combination of UAV and terrestrial photogrammetry to assess rapid glacier evolution and map glacier hazards

NASA Astrophysics Data System (ADS)

Fugazza, Davide; Scaioni, Marco; Corti, Manuel; D'Agata, Carlo; Azzoni, Roberto Sergio; Cernuschi, Massimo; Smiraglia, Claudio; Diolaiuti, Guglielmina Adele

2018-04-01

Tourists and hikers visiting glaciers all year round face hazards such as sudden terminus collapses, typical of such a dynamically evolving environment. In this study, we analyzed the potential of different survey techniques to analyze hazards of the Forni Glacier, an important geosite located in Stelvio Park (Italian Alps). We carried out surveys in the 2016 ablation season and compared point clouds generated from an unmanned aerial vehicle (UAV) survey, close-range photogrammetry and terrestrial laser scanning (TLS). To investigate the evolution of glacier hazards and evaluate the glacier thinning rate, we also used UAV data collected in 2014 and a digital elevation model (DEM) created from an aerial photogrammetric survey of 2007. We found that the integration between terrestrial and UAV photogrammetry is ideal for mapping hazards related to the glacier collapse, while TLS is affected by occlusions and is logistically complex in glacial terrain. Photogrammetric techniques can therefore replace TLS for glacier studies and UAV-based DEMs hold potential for becoming a standard tool in the investigation of glacier thickness changes. Based on our data sets, an increase in the size of collapses was found over the study period, and the glacier thinning rates went from 4.55 ± 0.24 m a-1 between 2007 and 2014 to 5.20 ± 1.11 m a-1 between 2014 and 2016.

Landslide monitoring using terrestrial laser scanner and robotic total station in Rancabali, West Java (Indonesia)

NASA Astrophysics Data System (ADS)

Gumilar, Irwan; Fattah, Alif; Abidin, Hasanuddin Z.; Sadarviana, Vera; Putri, Nabila S. E.; Kristianto

2017-07-01

West Java is one of the provinces in Indonesia which is prone to landslide. Over the past few years, landslides in this area have resulted in a large number of victims. One of the areas in West Java with the highest risk of landslide occurrence is Rancabali Ciwidey. In general, the morphology around the landslide location is steep hills, with the slope > 30° and the altitude between 1550 - 1865 m above sea level. Several indications of ground movements can be seen in the form of slumps and cracks on the village roads and tea plantation, as well as slanting trees and electricity poles. The ground movement monitoring in this area is necessary for disaster mitigation. Several methods that can be used to monitor the landslide are using Terrestrial Laser Scanner (TLS) and robotic total station. This research aims is monitoring the landslide using these methods. The methodology used in this research is by obtaining the scanning data using TLS C-10 and Robotic total station MS05 measurements to obtain the coordinates of monitoring point clouds and prism. The TLS software that we used are Cyclone 8.1 and Maptek I-Site. For robotic total station, the software that we used is MSP software. These method hopefully can be used for early warning system of landslide in Rancabali area.

Only Image Based for the 3d Metric Survey of Gothic Structures by Using Frame Cameras and Panoramic Cameras

NASA Astrophysics Data System (ADS)

Pérez Ramos, A.; Robleda Prieto, G.

2016-06-01

Indoor Gothic apse provides a complex environment for virtualization using imaging techniques due to its light conditions and architecture. Light entering throw large windows in combination with the apse shape makes difficult to find proper conditions to photo capture for reconstruction purposes. Thus, documentation techniques based on images are usually replaced by scanning techniques inside churches. Nevertheless, the need to use Terrestrial Laser Scanning (TLS) for indoor virtualization means a significant increase in the final surveying cost. So, in most cases, scanning techniques are used to generate dense point clouds. However, many Terrestrial Laser Scanner (TLS) internal cameras are not able to provide colour images or cannot reach the image quality that can be obtained using an external camera. Therefore, external quality images are often used to build high resolution textures of these models. This paper aims to solve the problem posted by virtualizing indoor Gothic churches, making that task more affordable using exclusively techniques base on images. It reviews a previous proposed methodology using a DSRL camera with 18-135 lens commonly used for close range photogrammetry and add another one using a HDR 360° camera with four lenses that makes the task easier and faster in comparison with the previous one. Fieldwork and office-work are simplified. The proposed methodology provides photographs in such a good conditions for building point clouds and textured meshes. Furthermore, the same imaging resources can be used to generate more deliverables without extra time consuming in the field, for instance, immersive virtual tours. In order to verify the usefulness of the method, it has been decided to apply it to the apse since it is considered one of the most complex elements of Gothic churches and it could be extended to the whole building.

Is the timed loaded standing test a valid measure of back muscle endurance in people with vertebral osteoporosis?

PubMed

Newman, M; Newman, R; Hughes, T; Vadher, K; Barker, K L

2018-04-01

Timed loaded standing (TLS) is a suggested measure of back muscle endurance for people with vertebral osteoporosis. Surface electromyography revealed back muscles work harder and fatigue during TLS. The test end-point and total time were associated with back fatigue. The findings help demonstrate the concurrent validity of the TLS test. The TLS test is suggested as a measure of back muscle endurance for patients with vertebral osteoporosis. However, to date, no study has demonstrated that TLS does measure back extensor or erector spinae (ES) muscle endurance. We used surface electromyography (sEMG) to investigate the performance of the thoracic ES muscles during TLS. Thirty-six people with vertebral osteoporosis with a mean age of 71.6 (range 45-86) years participated. sEMG recordings were made of the ES at T3 and T12 bilaterally during quiet standing (QS) and TLS. The relative (%) change in sEMG amplitude between conditions was compared. Fatigue was evaluated by analysing the change in median frequency (MF) of the sEMG signal during TLS, and the correlation between maximal TLS time and rate of MF decline was examined. Activity in the ES increased significantly during TLS at all electrode locations. During TLS, the MF declined at a mean rate of -24.2% per minute (95% C.I. -26.5 to -21.9%). The MF slope and test time were strongly correlated (r 2  = 0.71), and at test end, the final MF dropped to an average 89% (95% C.I. 85 to 93%) of initial MF. Twenty-eight participants (78%) reported fatigue was the main reason for stopping, and for eight (22%), it was pain. This study demonstrates that TLS challenges the ES muscles in the thoracic region and results in ES fatigue. Endurance time and the point at which the TLS test ends are strongly related to ES fatigue.

Using terrestrial laser scanning for differential measurement of interannual rock glacier movement in the Argentine Dry Andes

NASA Astrophysics Data System (ADS)

Kane, Renato R.

Argentina has recently implemented laws to protect glaciers and buried ice in the Andes to improve the sustainability of scarce, long-term water resources. Therefore, all glaciers and buried ice terrains must be located and avoided in any commercial alterations of the landscape. Buried ice in this remote and often dangerous terrain typically is located via the use of remote-sensing techniques. This thesis applies one such technique, Light Detection and Ranging (LiDAR) in the form of Terrestrial Laser Scanning (TLS), to detect rock glacier movement that is indicative of flowing, buried ice not visible in near surface excavations. TLS surveys were completed at two locales, Los Azules and El Altar, in both AD 2013 and AD 2014 on landscapes where buried ice is suspected to have produced the current surface forms. Multiple TLS scans were co-registered with the use of benchmarks, both between scans and between years, which introduced quantifiable positional errors. Digital Elevation Models (DEMs) were derived from the point cloud data by standardizing the spacing of the points in the horizontal direction, creating 0.1 m by 0.1 m cells with elevation as the cell value. The DEMs for each year were subtracted from each other to yield a change in elevation. The surface roughness of the rock glaciers (vertical variability within each cell) was empirically determined and evaluated as a threshold for results. Both sites showed sub-decimeter interannual movements, and the direction of their movement is typical of forms with buried ice. The results of the study were validated using independent GPS data showing annual movement rates. Despite the downslope movement of these rock glaciers, the volume of ice contained within them remains unclear, and further study is required to assess the volume of water contained.

Characterizing effects of wind erosion on soil microtopography in a semiarid grassland using terrestrial laser scanning

NASA Astrophysics Data System (ADS)

Li, J.; Washington-Allen, R. A.; Okin, G. S.

2010-12-01

Aeolian processes play important roles in microtopography and associated soil-plant interactions in arid and semiarid landscapes. Most previous research has focused on scales larger than plant-interspaces and the dynamics of “fertile islands” associated with individual shrubs. Arid and semiarid ecosystems are notoriously heterogeneous in both microtopography and soil nutrients, and investigations of soil topography and plant-soil interactions at much finer scales (e.g., a few millimeters) are difficult using traditional point based sampling methods. Terrestrial laser scanners (TLS) are novel tools for which techniques can be developed to accurately characterize micro-scale topography with a spot diameter of 4.5 mm, and 2 mm ranging accuracy at 50 kHz. In this study, we employed a portable TLS (a Leica ScanStation 2) to digitally capture the 3-dimensional soil microtopography in a Chihuahuan desert grassland located in southern New Mexico. Soil surface on this site had been exposed to enhanced wind erosion since the spring of 2004. A control plot, located adjacent to the wind erosion plot, was also scanned to provide soil microtopography bench mark. A nearest neighbor interpolation was used on the elevation point clouds to yield bare ground, vegetation, and combined digital surface models for both plots. Additionally, measures of height and foliage diversity, vegetation and bare ground cover, and surface roughness were calculated. The results from this field study clearly demonstrate that TLS can provide insights on changes in microtopography affected by aeolian processes. Moreover, within the known distribution of soil nutrients, the 3D surface model of the soil microtopography provided unprecedented detail on the distribution of “mini” fertile islands associated with topography that were not revealed by studies at plant-interspace scale.

Investigation of a Combined Surveying and Scanning Device: The Trimble SX10 Scanning Total Station

PubMed Central

Lachat, Elise; Landes, Tania; Grussenmeyer, Pierre

2017-01-01

Surveying fields from geosciences to infrastructure monitoring make use of a wide range of instruments for accurate 3D geometry acquisition. In many cases, the Terrestrial Laser Scanner (TLS) tends to become an optimal alternative to total station measurements thanks to the high point acquisition rate it offers, but also to ever deeper data processing software functionalities. Nevertheless, traditional surveying techniques are valuable in some kinds of projects. Nowadays, a few modern total stations combine their conventional capabilities with those of a laser scanner in a unique device. The recent Trimble SX10 scanning total station is a survey instrument merging high-speed 3D scanning and the capabilities of an image-assisted total station. In this paper this new instrument is introduced and first compared to state-of-the-art image-assisted total stations. The paper also addresses the topic of various laser scanning projects and the delivered point clouds are compared with those of other TLS. Directly and indirectly georeferenced projects have been carried out and are investigated in this paper, and a polygonal traverse is performed through a building. Comparisons with the results delivered by well-established survey instruments show the reliability of the Trimble SX10 for geodetic work as well as for scanning projects. PMID:28362319

Integrating Airborne and Terrestrial Laser Scanning data to monitor active landsliding

NASA Astrophysics Data System (ADS)

Székely, B.; Molnár, G.; Roncat, A.; Lehner, H.; Gaisecker, Th.; Drexel, P.

2009-04-01

Active slope processes often endanger various built-up objects and, as a consequence, sometimes human lives as well. Data acquision on the status and evolution of such slopes, especially those that had already affected by landsliding, therefore is a primary target for engineering geomorphic research. The method of laser scanning provides an appropriate data collection technique with the requested accuracy. Data from repeated Airborne Laser Scanning (ALS) campaigns are suitable to be analysed for the slow, incipient movements of the slope. The problem of this surveying technique is that repetition time is strongly dependent on the financial resources of the monitoring project, and often the requested recurrence of flight campaigns cannot be achieved. A possible solution to densify the data acquisition in time is the application of Terrestrial Laser Scanning (TLS) and intergration of its data with ALS data sets. TLS has the advantage of flexibility and shorter observation distances compared to ALS. This technique needs special considerations and tedious processing since the geometric setting of the data acquision considerably differ in TLS and ALS. Furthermore, obstacles in the landscape may partly hamper the data acqusition which rarely the case in ALS. Our case study area is a several-decade-long active landsliding in Doren (Federal State Vorarlberg, Austria) that as it develops, it is about to endangers houses of the locality. The site is especially suitable for the project, because multi-temporal data sets (from ALS flight campaigns in 2003, 2006 and 2007, respectively) of this area are available. The data integration is carried out in the form of production of point clouds (sensed from various points of the valley sides) and we compared the results with the results of the previous ALS campaigns. With the planned repetition of the TLS measurements new and detailed insights can be achieved concerning the evolution of the incipient and on-going slow motions. This project has been supported by the Austrian Academy of Sciences (ÖAW) within the framework of scheme "Geophysics of the Earth's crust", Riegl GmbH generously provided a full-waveform terrestrial laser scanning device.

Analysis of the Three-Dimensional Vector FAÇADE Model Created from Photogrammetric Data

NASA Astrophysics Data System (ADS)

Kamnev, I. S.; Seredovich, V. A.

2017-12-01

The results of the accuracy assessment analysis for creation of a three-dimensional vector model of building façade are described. In the framework of the analysis, analytical comparison of three-dimensional vector façade models created by photogrammetric and terrestrial laser scanning data has been done. The three-dimensional model built from TLS point clouds was taken as the reference one. In the course of the experiment, the three-dimensional model to be analyzed was superimposed on the reference one, the coordinates were measured and deviations between the same model points were determined. The accuracy estimation of the three-dimensional model obtained by using non-metric digital camera images was carried out. Identified façade surface areas with the maximum deviations were revealed.

Afterslip-dominated surface rupture in the M6.0 South Napa Earthquake as constrained by structure-from-motion analysis and terrestrial laser scanning

NASA Astrophysics Data System (ADS)

DeLong, S. B.; Pickering, A.; Scharer, K. M.; Hudnut, K. W.; Lienkaemper, J. J.

2014-12-01

Near-fault surface deformation associated with the August 24, 2014 M6.0 South Napa earthquake included both coseismic and post-seismic slip. Initial synthesis of field observations and initial measurement and modeling of afterslip from traditional survey methods indicate that coseismic slip was minimal (<10 cm) within 8 km northward from the epicenter but post-seismic slip, in places, approached 40 cm. We collected reconnaissance photographs using professional-grade SLR cameras from a helicopter within 12 hours after the earthquake, and a more systematic collection of air photos the day after the earthquake. We also collected terrestrial laser scanner (TLS) data two days (on August 26) and twenty-two days (on September 22) after the earthquake along a 0.5 km length of the main fault trace, just south of State Highway 12. This study site is 6 km north of the southern end of the 15 km long surface rupture and 5 km south of the highest measured co-seismic slip. We used structure-from-motion (SfM) methods to mosaic, orthorectify, and generate dense point clouds from the photos. SfM data corroborates survey-based ground observations of limited (~5 cm or less) coseismic slip along the fault trace between CA State Highway 12 and Withers Road, on discontinuous left-stepping en echelon ruptures. By August 26, the surface rupture became nearly continuous, and cultural features extracted from the TLS point clouds indicate horizontal slip magnitudes between 15 and 27 cm, increasing northward. By September 22, slip magnitudes had increased to between 26 and 46 cm. The lower slip magnitudes are to the south at Withers Road, and the general trend is increased slip to the north, but there is more slip variability along the fault trace in the September 15 data. From August 26 to September 15, the west side of the fault trace uplifted between 0.5 and 5 cm relative to east side. Increased relief on the surface rupture itself indicated a slight compressional component of the deformation. These results confirm that post-event air photos can be useful for rapid 3D mapping, and that the unparalleled accuracy of TLS data can be used to quantify even very subtle deformation patterns in three dimensions and document changes through time.

Use of a new ultra-long-range terrestrial LiDAR system to monitor the mass balance of very small glaciers in the Swiss Alps

NASA Astrophysics Data System (ADS)

Fischer, M.; Huss, M.; Hoelzle, M.

2015-12-01

Measuring glacier mass balance is important as it directly reflects the climatic forcing on the glacier surface. Today, repeated comparison of digital elevation models (DEMs) is a popular and widely used approach to derive surface elevation, volume and mass changes for a large number of glaciers. In high-mountain environments, airborne laser scanning (ALS) techniques currently provide the most accurate and highest resolution DEMs on the catchment scale, allowing the computation of glacier changes on an annual or even semi-annual basis. For monitoring individual glaciers though, terrestrial laser scanning (TLS) is easier and more cost-efficiently applied on the seasonal timescale compared to ALS. Since most recently, the application of the latest generation of ultra-long-range near infrared TLS systems allows the acquisition of surface elevation information over snow and ice of unprecedented quality and over larger zones than with previous near infrared TLS devices. Although very small glaciers represent the majority in number in most mountain ranges on Earth, their response to climatic changes is still not fully understood and field measurements are sparse. Therefore, a programme was set up in 2012 to monitor both the seasonal and annual surface mass balance of six very small glaciers across the Swiss Alps using the direct glaciological method. As often nearly the entire surface is visible from one single location, TLS is a highly promising technique to generate repeated high-resolution DEMs as well as to derive seasonal geodetic mass balances of very small ice masses. In this study, we present seasonal surface elevation, volume and geodetic mass changes for five very small glaciers in Switzerland (Glacier de Prapio, Glacier du Sex Rouge, St. Annafirn, Schwarzbachfirn and Pizolgletscher) derived from the comparison of seasonally repeated high-resolution DEMs acquired since autumn 2013 with the new ultra-long-range TLS device Riegl VZ-6000. We show the different processing steps necessary to derive geodetic glacier changes from the raw data (the TLS point clouds), comment on the accuracy of our results and compare them to very dense in-situ measurements, and thus investigate the potential of our approach to circumvent laborious and time consuming glaciological mass balance measurements of very small glaciers.

Image Capture with Synchronized Multiple-Cameras for Extraction of Accurate Geometries

NASA Astrophysics Data System (ADS)

Koehl, M.; Delacourt, T.; Boutry, C.

2016-06-01

This paper presents a project of recording and modelling tunnels, traffic circles and roads from multiple sensors. The aim is the representation and the accurate 3D modelling of a selection of road infrastructures as dense point clouds in order to extract profiles and metrics from it. Indeed, these models will be used for the sizing of infrastructures in order to simulate exceptional convoy truck routes. The objective is to extract directly from the point clouds the heights, widths and lengths of bridges and tunnels, the diameter of gyrating and to highlight potential obstacles for a convoy. Light, mobile and fast acquisition approaches based on images and videos from a set of synchronized sensors have been tested in order to obtain useable point clouds. The presented solution is based on a combination of multiple low-cost cameras designed on an on-boarded device allowing dynamic captures. The experimental device containing GoPro Hero4 cameras has been set up and used for tests in static or mobile acquisitions. That way, various configurations have been tested by using multiple synchronized cameras. These configurations are discussed in order to highlight the best operational configuration according to the shape of the acquired objects. As the precise calibration of each sensor and its optics are major factors in the process of creation of accurate dense point clouds, and in order to reach the best quality available from such cameras, the estimation of the internal parameters of fisheye lenses of the cameras has been processed. Reference measures were also realized by using a 3D TLS (Faro Focus 3D) to allow the accuracy assessment.

Monitoring of Progressive Damage in Buildings Using Laser Scan Data

NASA Astrophysics Data System (ADS)

Puente, I.; Lindenbergh, R.; Van Natijne, A.; Esposito, R.; Schipper, R.

2018-05-01

Vulnerability of buildings to natural and man-induced hazards has become a main concern for our society. Ensuring their serviceability, safety and sustainability is of vital importance and the main reason for setting up monitoring systems to detect damages at an early stage. In this work, a method is presented for detecting changes from laser scan data, where no registration between different epochs is needed. To show the potential of the method, a case study of a laboratory test carried out at the Stevin laboratory of Delft University of Technology was selected. The case study was a quasi-static cyclic pushover test on a two-story high unreinforced masonry structure designed to simulate damage evolution caused by cyclic loading. During the various phases, we analysed the behaviour of the masonry walls by monitoring the deformation of each masonry unit. First a plane is fitted to the selected wall point cloud, consisting of one single terrestrial laser scan, using Principal Component Analysis (PCA). Second, the segmentation of individual elements is performed. Then deformations with respect to this plane model, for each epoch and specific element, are determined by computing their corresponding rotation and cloud-to-plane distances. The validation of the changes detected within this approach is done by comparison with traditional deformation analysis based on co-registered TLS point clouds between two or more epochs of building measurements. Initial results show that the sketched methodology is indeed able to detect changes at the mm level while avoiding 3D point cloud registration, which is a main issue in computer vision and remote sensing.

FLORENCE: a randomized, double-blind, phase III pivotal study of febuxostat versus allopurinol for the prevention of tumor lysis syndrome (TLS) in patients with hematologic malignancies at intermediate to high TLS risk.

PubMed

Spina, M; Nagy, Z; Ribera, J M; Federico, M; Aurer, I; Jordan, K; Borsaru, G; Pristupa, A S; Bosi, A; Grosicki, S; Glushko, N L; Ristic, D; Jakucs, J; Montesinos, P; Mayer, J; Rego, E M; Baldini, S; Scartoni, S; Capriati, A; Maggi, C A; Simonelli, C

2015-10-01

Serum uric acid (sUA) control is of key relevance in tumor lysis syndrome (TLS) prevention as it correlates with both TLS and renal event risk. We sought to determine whether febuxostat fixed dose achieves a better sUA control than allopurinol while preserving renal function in TLS prevention. Patients with hematologic malignancies at intermediate to high TLS risk grade were randomized to receive febuxostat or allopurinol, starting 2 days before induction chemotherapy, for 7-9 days. Study treatment was blinded, whereas daily dose (low/standard/high containing allopurinol 200/300/600 mg, respectively, or fixed febuxostat 120 mg) depended on the investigator's choice. The co-primary end points, sUA area under curve (AUC sUA1-8) and serum creatinine change, were assessed from baseline to day 8 and analyzed through analysis of covariance with two-sided overall significance level of 5%. Secondary end points included treatment responder rate, laboratory and clinical TLS incidence and safety. A total of 346 patients (82.1% intermediate TLS risk; 82.7% assigned to standard dose) were randomized. Mean AUC sUA1-8 was 514.0 ± 225.71 versus 708.0 ± 234.42 mgxh/dl (P < 0.0001) in favor of febuxostat. Mean serum creatinine change was -0.83 ± 26.98% and -4.92 ± 16.70% for febuxostat and allopurinol, respectively (P = 0.0903). No differences among secondary efficacy end points were detected. Drug-related adverse events occurred in 6.4% of patients in both arms. In the largest adult trial carried out in TLS prevention, febuxostat achieved a significant superior sUA control with one fixed dose in comparison to allopurinol with comparable renal function preservation and safety profile. NCT01724528. © The Author 2015. Published by Oxford University Press on behalf of the European Society for Medical Oncology. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Detection of precursory deformation using a TLS. Application to spatial prediction of rockfalls.

NASA Astrophysics Data System (ADS)

Abellán, Antonio; Vilaplana, Joan Manuel; Calvet, Jaume; Rodriguez, Xavier

2010-05-01

Different applications on the use of Terrestrial Laser Scanner (TLS) on rock slopes are undergoing rapid development, mainly in the characterization of 3D discontinuities and the monitoring of rock slopes. The emphasis of this research is on detection of precursory deformation and its application to spatial prediction of rockfalls. The pilot study area corresponds to the main scarp of an old slide located at Puigcercós (Catalonia, Spain). 3D temporal variations of the terrain were analyzed by comparing sequential TLS datasets. Five areas characterized by centimetric precursory deformations were detected in the study area. Of these deformations, (a) growing deformation across three areas culminated in a rockfall occurrence; and (b) another growing deformation across two areas was detected, making a subsequent rockfall likely. The areas with precursory deformations detected in Puigcercós showed the following characteristics: (a) a sub-vertical fracture delimiting the moving part from the rest of the slope; (b) an increase in the horizontal displacement upwards, typical of a toppling failure mechanism (Muller 1968; Goodman and Bray, 1976). In addition, decimetric-scale rockfalls were observed in the upper part of the moving areas, which is consistent with the observations of Rosser et al., (2007). TLS ILRIS 3D technical characteristics are as follows: high accuracy (7.2 mm at a range of 50 meters), high angular resolution (e.g. 1 point every few cm), fast data acquisition: 2,500 points/second; broad coverage; high maximum range on natural slopes: ~600m. The single point distances between the surface of reference and the successive data point clouds were computed using a conventional methodology (data vs. reference comparison). The direction of comparison was defined as the normal vector of the rock face at its central part. We focused in the study of the small scale displacements towards the origin of coordinates, which reflect the pre-failure deformation on part of the slope. A nearest neighbour (NN) filtering technique was applied to the RAW datasets (Abellán et al., 2009), enabling the accurate detection of centimetric displacements. The parameters of the precursory deformation correlated with the failure mechanism, lithology and volume of the rockfall: higher values of length and duration of the precursory deformation were found in the toppling failure mechanism, ductile materials and rockfalls that involved considerable volumes. These results are consistent with observations in the literature regarding rockfalls of higher magnitude and lower frequency (e.g.: Zvelebil and Moser, 2001; Crosta and Agliardi, 2004; Hungr et al., 2007). It is also important to mention that no precursory indicators were detected prior to each rockfall that occurred in the study areas. This could simply be due to infrequent data acquisition or insufficient instrument accuracy. The application of TLS for the spatial prediction of rockfalls should be validated through: (a) the continuation of the TLS monitoring campaign at the areas which currently show ongoing deformation; (b) the selection of new case studies at different geomorphological sites with different lithologies; and (c) the selection of new case studies with different failure mechanisms (e.g. fall, slide). These tasks are of paramount importance to understand the pre-failure behaviour of rockfalls and to implement these findings in an early warning system.

Disclosure of Temporary Exposures as Permanent Website Applications through the Patrimonial Survey

NASA Astrophysics Data System (ADS)

Corso, Juan; Garcia-Almirall, Pilar; López, Daniel; Casals, Jordi

2017-10-01

In a context of web application in the field of the dissemination of cultural heritage, this article advances in a methodology for the optimization of points clouds obtained through the technology of Laser Scanner (TLS). Identifying the potential of TLS surveys as interactive models that allow the cultural heritage to be perpetuated over time. This point cloud optimization is developed with free software, focusing its exploitation on an interactive web application, which has made it possible to convert two temporary museum exhibitions into permanent exhibitions in virtual format. Developed in conjunction with the Museu d’Història de la Ciutat de Barcelona. The case study focuses on the Palau Reial Major, Gothic style, formed by the chapel of Santa Àgata (built in 1302, on the Roman wall) and Saló del Tinell (built between 1359 and 1370, on the Roman remains). Located in the Plaça del Rei, in the old town of Barcelona. In this application is very important the visual impact, it requires to represent a faithful model of the interior of the building, from the point of view of color and lighting, avoiding the transparencies of the model through a dense cloud of dots, without occlusions, this requires a great quantity of positions. This implies a clear methodology, using different techniques such as photographic proyection, given the complexity of lighting of the building, as much for the artificial lighting as for the lighting of the stained glass. In this process, there were 84 positions that provide greater density of points, which are optimized with free programs. The temporary exhibitions of the case studies, elaborated by the MUHBA in the Saló del Tinell are: “Indianas, 1736-1847. The origins of industrial Barcelona” exposed from May 19, 2012 to March 3, 2013 and “El Món del 1714” exposed from December 20 to September 28, 2014. Both are based on a tour with showcases and exhibitors where different objects of a museum character are shown, such as looms, cloths, dresses, books, among others, accompanied by panels with texts and images that contain the information that each exhibition shows. Virtual applications allow such temporary exposures to become an interactive model, in which information can be permanently consulted. A virtual tour where the user can interact with the information panels and observe in detail the different objects of the exhibition. The results of this work manage to generate a powerful mechanism of diffusion and approximation to the society of the cultural heritage that, otherwise, as a whole as exhibition would disappear.

A LiDAR Survey of an Exposed Magma Plumbing System in the San Rafael Desert, Utah

NASA Astrophysics Data System (ADS)

Richardson, J. A.; Kinman, S.; Connor, L.; Connor, C.; Wetmore, P. H.

2013-12-01

Fields of dozens to hundreds of volcanoes are a common occurrence on Earth and are created due to distributed-style volcanism often referred to as "monogenetic." These volcanic fields represent a significant hazard on both local and regional scales. While it is important to understand the physical states of active volcanic fields, it is difficult or impossible to directly observe active magma emplacement. Because of this, observing an exposed magmatic plumbing system may enable further efforts to describe active volcanic fields. The magmatic plumbing system of a Pliocene-aged monogenetic volcanic field is currently exposed as a sill and dike swarm in the San Rafael Desert of Central Utah. Alkali diabase and shonkinitic sills and dikes in this region intruded into Mesozoic sedimentary units of the Colorado Plateau and now make up the most erosion resistant units, forming mesas, ridges, and small peaks associated with sills, dikes, and plug-like bodies respectively. Diez et al. (Lithosphere, 2009) and Kiyosugi et al. (Geology, 2012) provide evidence that each cylindrical plug-like body represents a conduit that once fed one volcano. The approximate original depth of the currently exposed swarm is estimated to be 0.8 km. Volcanic and sedimentary materials may be discriminated at very high resolution with the use of Light Detection and Ranging (LiDAR). LiDAR produces a three dimensional point cloud, where each point has an associated return intensity. High resolution, bare earth digital elevation models (DEMs) can be produced after vegetation is identified and removed from the dataset. The return intensity at each point can enable classification as either sedimentary or volcanic rock. A Terrestrial LiDAR Survey (TLS) has been carried out to map a large hill with at least one volcanic conduit at its core. This survey implements a RIEGL VZ-400 3D Laser Scanner, which successfully maps solid objects in line-of-sight and within 600 meters. The laser used has a near infrared wavelength. The scanner is set up at 11 scan positions around the conduit edifice, enabling the creation of a 3D point cloud for the edifice and surrounding surface geology. Vegetation is then removed and the point cloud is georeferenced to create a bare earth DEM. Points are assigned RGB color values using calibrated photographs taken coincident to the laser scanning. With the processed LiDAR point cloud, volcanic and sedimentary materials may be discriminated by return intensity and RGB color values. We find that intrusive material returns a demonstrably lower intensity signal than the lighter sedimentary units. Along with field mapping during the TLS, this information can provide high resolution detail of the local magma plumbing system. Exposed dikes, sills, and conduits mapped by this survey are extrapolated into a 3D space from the top of the edifice the base election of the survey to provide a first-order estimate of the final intrusive volume of the now eroded volcanic field in this location.

The Use of Terrestrial Laser Scanning for Determining the Driver’s Field of Vision

PubMed Central

Zemánek, Tomáš; Cibulka, Miloš; Skoupil, Jaromír

2017-01-01

Terrestrial laser scanning (TLS) is currently one of the most progressively developed methods in obtaining information about objects and phenomena. This paper assesses the TLS possibilities in determining the driver’s field of vision in operating agricultural and forest machines with movable and immovable components in comparison to the method of using two light point sources for the creation of shade images according to ISO (International Organization for Standardization) 5721-1. Using the TLS method represents a minimum time saving of 55% or more, according to the project complexity. The values of shading ascertained by using the shadow cast method by the point light sources are generally overestimated and more distorted for small cabin structural components. The disadvantage of the TLS method is the scanner’s sensitivity to a soiled or scratched cabin windscreen and to the glass transparency impaired by heavy tinting. PMID:28902177

Automating slope monitoring in mines with terrestrial lidar scanners

NASA Astrophysics Data System (ADS)

Conforti, Dario

2014-05-01

Static terrestrial laser scanners (TLS) have been an important component of slope monitoring for some time, and many solutions for monitoring the progress of a slide have been devised over the years. However, all of these solutions have required users to operate the lidar equipment in the field, creating a high cost in time and resources, especially if the surveys must be performed very frequently. This paper presents a new solution for monitoring slides, developed using a TLS and an automated data acquisition, processing and analysis system. In this solution, a TLS is permanently mounted within sight of the target surface and connected to a control computer. The control software on the computer automatically triggers surveys according to a user-defined schedule, parses data into point clouds, and compares data against a baseline. The software can base the comparison against either the original survey of the site or the most recent survey, depending on whether the operator needs to measure the total or recent movement of the slide. If the displacement exceeds a user-defined safety threshold, the control computer transmits alerts via SMS text messaging and/or email, including graphs and tables describing the nature and size of the displacement. The solution can also be configured to trigger the external visual/audio alarm systems. If the survey areas contain high-traffic areas such as roads, the operator can mark them for exclusion in the comparison to prevent false alarms. To improve usability and safety, the control computer can connect to a local intranet and allow remote access through the software's web portal. This enables operators to perform most tasks with the TLS from their office, including reviewing displacement reports, downloading survey data, and adjusting the scan schedule. This solution has proved invaluable in automatically detecting and alerting users to potential danger within the monitored areas while lowering the cost and work required for monitoring. An explanation of the entire system and a post-acquisition data demonstration will be presented.

Detection of seasonal erosion processes at the scale of an elementary black marl gully from time series of Hi-Resolution DEMs

NASA Astrophysics Data System (ADS)

Bechet, J.; Duc, J.; Loye, A.; Jaboyedoff, M.; Mathys, N.; Malet, J.-P.; Klotz, S.; Le Bouteiller, C.; Rudaz, B.; Travelletti, J.

2015-12-01

The Roubine catchment located in the experimental research station of Draix-Bléone (south French Alps) is situated in Callovo-Oxfordian black marls, a lithology particularly prone to weathering processes. Since 30 years, this small watershed (0.13 ha) has been monitored for analysing hillslope erosion processes at the scale of elementary gullies. Since 2007, a monitoring of surface changes has been performed by comparing of high-resolution digital elevation models (HR-DEMs) produced from Terrestrial Laser Scanner (TLS). The objectives are (1) to detect and (2) to quantify the sediment production and the evolution of the gully morphology in terms of sediment availability/transport capacity vs. rainfall and runoff generation. Time series of TLS observations have been acquired periodically based on the seasonal runoff activity with a very high point cloud density ensuring a resolution of the DEM at the centimetre scale. The topographic changes over a time span of 4 years are analysed. Quantitative analyses of the seasonal erosion activity and of the sediment fluxes contributing to the recharge of tributary gullies and rills are presented. According to the transport capacity generated by runoff, loose regolith soil sources are eroded at different periods of the year. These are forming transient deposits in the main reach when routed downstream, evolving from a transport-limited to a supply-limited regime through the year. The monitoring allows a better understanding of the seasonal pattern of erosion processes for black marls badland-type slopes and illustrates the mode of sediment production and the temporal storage/entrainment in similar slopes. The observed surface changes caused by erosion (ablation/deposition) are quantified for the complete TLS time-series, and sediment budget maps are presented for each season. Comparisons of the TLS sediment budget map with the in situ sediment monitoring (limnigraph and sedigraph) in the stream are discussed. Intense and long duration rainfall events are the triggering factor of the major erosive events.

Geomorphological processes in a semiarid badland area using new technologies: TLS, terrestrial and aerial SfM photogrammetry

NASA Astrophysics Data System (ADS)

Ferrer, Victor; Errea, Paz; Alonso, Esteban; Gómez-Gutiérrez, Álvaro; Nadal-Romero, Estela

2017-04-01

We used three different methods Terrestrial Laser Scanner (TLS), terrestrial Structure from Motion photogrammetry (SfM) and aerial SfM photogrammetry with an Unmanned Aerial Vehicle (UAV) to analyse geomorphological processes in a semiarid badland landscape. Los Aguarales badlands, located in the Ebro Depression (Spain), occur in the Holocene sediment accumulated in a wide valley infilled with silt and clay. The morphology of Los Aguarales badlands is complex, making the geomorphological interpretation a difficult task. Los Aguarales badlands are characterized by the sequence of incision and piping processes developing an abrupt and complex landscape. Three different representative and small study sites were selected to carry out a detailed analysis of the geomorphological processes. Moreover, the capability of the three methods to produce high resolution point clouds was evaluated. The obtained topographical changes were very low during the first 6 months (March-October 2016). Measured topographical changes, with TLS and terrestrial SfM, were very low, and these values fall within the range of the acquisition error of the devices used (2-6 cm). The preliminary results indicated the possibilities of a multiscale approach using new technologies to study geomorphological and erosion processes, although long-term studies will be necessary to obtain erosion rates in this semiarid badland area. Acknowledgement This research was supported by ESPAS and eTERA 3D projects (CGL2015- 65569-R and CGL2014-54822-R, funded by the MINECO-FEDER). Estela Nadal-Romero is the recipient of a Ramón y Cajal postdoctoral contract (Spanish Ministry of Economy and Competitiveness).

Quantifying streambank erosion: a comparative study using an unmanned aerial system (UAS) and a terrestrial laser scanner

NASA Astrophysics Data System (ADS)

Rizzo, D.; Hamshaw, S. D.; Dewoolkar, M.; ONeil-Dunne, J.; Frolik, J.; Bryce, T. G.; Waldron, A. Y.

2015-12-01

Streambank erosion is a common non-point source contributing to suspended sediment and nutrient loading of waterways, and recently has been estimated to account for 30-80% of sediment loading into receiving waters. There is interest in developing reliable methods to quantify bank erosion in watersheds, so effective management strategies can be devised. However, current methods can be either cost prohibitive or unreliable. Direct measurement approaches (surveys and erosion pins) are labor intensive and yield site-specific measurements that are limited for extrapolation to larger scales. Similar issues arise with analytical methods such as slope stability analysis, which require material parameters that are resource intensive to determine. Newer approaches such as use of aerial LiDAR data have proved effective for watershed level assessment, but come with long turnaround times and high cost. Terrestrial laser scanning (TLS) is also effective and offers high accuracy, however collection over large areas is impractical and post-processing is labor intensive. New technology in the form of unmanned aerial systems (UAS) has the potential to significantly enhance the ability to monitor channel migration and quantify bank erosion at variable scales. In this study, 20 km of the Mad and Winooski Rivers in Vermont were flown using a senseFly eBee UAS. Flights were made in spring and fall 2015 in leaf-off conditions with selected portions also flown after large storms in the summer. Change in bank profiles between spring and fall flights provide a comprehensive estimate of bank erosion along the study reaches. Six sites with varying bank heights, erosion sensitivity, and vegetation conditions were selected for simultaneous surveying using a TLS. Point cloud data from both the TLS and UAS were compared to assess the accuracy of the UAS for capturing the bank profile. Changes in bank cross-sections and in volumes calculated from 3D digital surface models were used to compare the UAS and TLS methods. Ascertaining the accuracy of UAS in measuring streambank profiles will determine the appropriateness of the technology for long-term monitoring of bank erosion. The ability for rapid deployment, covering large areas, and fast post-processing allow for more comprehensive monitoring of streambank erosion in river systems.

Tree STEM and Canopy Biomass Estimates from Terrestrial Laser Scanning Data

NASA Astrophysics Data System (ADS)

Olofsson, K.; Holmgren, J.

2017-10-01

In this study an automatic method for estimating both the tree stem and the tree canopy biomass is presented. The point cloud tree extraction techniques operate on TLS data and models the biomass using the estimated stem and canopy volume as independent variables. The regression model fit error is of the order of less than 5 kg, which gives a relative model error of about 5 % for the stem estimate and 10-15 % for the spruce and pine canopy biomass estimates. The canopy biomass estimate was improved by separating the models by tree species which indicates that the method is allometry dependent and that the regression models need to be recomputed for different areas with different climate and different vegetation.

Use of terrestrial laser scanning (TLS) for monitoring and modelling of geomorphic processes and phenomena at a small and medium spatial scale in Polar environment (Scott River — Spitsbergen)

NASA Astrophysics Data System (ADS)

Kociuba, Waldemar; Kubisz, Waldemar; Zagórski, Piotr

2014-05-01

The application of Terrestrial Laser Scanning (TLS) for precise modelling of land relief and quantitative estimation of spatial and temporal transformations can contribute to better understanding of catchment-forming processes. Experimental field measurements utilising the 3D laser scanning technology were carried out within the Scott River catchment located in the NW part of the Wedel Jarlsberg Land (Spitsbergen). The measurements concerned the glacier-free part of the Scott River valley floor with a length of 3.5 km and width from 0.3 to 1.5 km and were conducted with a state-of-the-art medium-range stationary laser scanner, a Leica Scan Station C10. A complex set of measurements of the valley floor were carried out from 86 measurement sites interrelated by the application of 82 common 'target points'. During scanning, from 5 to 19 million measurements were performed at each of the sites, and a point-cloud constituting a 'model space' was obtained. By merging individual 'model spaces', a Digital Surface Model (DSM) of the Scott River valley was obtained, with a co-registration error not exceeding ± 9 mm. The accuracy of the model permitted precise measurements of dimensions of landforms of varied scales on the main valley floor and slopes and in selected sub-catchments. The analyses verified the efficiency of the measurement system in Polar meteorological conditions of Spitsbergen in mid-summer.

Tls Field Data Based Intensity Correction for Forest Environments

NASA Astrophysics Data System (ADS)

Heinzel, J.; Huber, M. O.

2016-06-01

Terrestrial laser scanning (TLS) is increasingly used for forestry applications. Besides the three dimensional point coordinates, the 'intensity' of the reflected signal plays an important role in forestry and vegetation studies. The benefit of the signal intensity is caused by the wavelength of the laser that is within the near infrared (NIR) for most scanners. The NIR is highly indicative for various vegetation characteristics. However, the intensity as recorded by most terrestrial scanners is distorted by both external and scanner specific factors. Since details about system internal alteration of the signal are often unknown to the user, model driven approaches are impractical. On the other hand, existing data driven calibration procedures require laborious acquisition of separate reference datasets or areas of homogenous reflection characteristics from the field data. In order to fill this gap, the present study introduces an approach to correct unwanted intensity variations directly from the point cloud of the field data. The focus is on the variation over range and sensor specific distortions. Instead of an absolute calibration of the values, a relative correction within the dataset is sufficient for most forestry applications. Finally, a method similar to time series detrending is presented with the only pre-condition of a relative equal distribution of forest objects and materials over range. Our test data covers 50 terrestrial scans captured with a FARO Focus 3D S120 scanner using a laser wavelength of 905 nm. Practical tests demonstrate that our correction method removes range and scanner based alterations of the intensity.

A defect in homologous recombination leads to increased translesion synthesis in E. coli

PubMed Central

Naiman, Karel; Pagès, Vincent; Fuchs, Robert P.

2016-01-01

DNA damage tolerance pathways allow cells to duplicate their genomes despite the presence of replication blocking lesions. Cells possess two major tolerance strategies, namely translesion synthesis (TLS) and homology directed gap repair (HDGR). TLS pathways involve specialized DNA polymerases that are able to synthesize past DNA lesions with an intrinsic risk of causing point mutations. In contrast, HDGR pathways are essentially error-free as they rely on the recovery of missing information from the sister chromatid by RecA-mediated homologous recombination. We have investigated the genetic control of pathway choice between TLS and HDGR in vivo in Escherichia coli. In a strain with wild type RecA activity, the extent of TLS across replication blocking lesions is generally low while HDGR is used extensively. Interestingly, recA alleles that are partially impaired in D-loop formation confer a decrease in HDGR and a concomitant increase in TLS. Thus, partial defect of RecA's capacity to invade the homologous sister chromatid increases the lifetime of the ssDNA.RecA filament, i.e. the ‘SOS signal’. This increase favors TLS by increasing both the TLS polymerase concentration and the lifetime of the TLS substrate, before it becomes sequestered by homologous recombination. In conclusion, the pathway choice between error-prone TLS and error-free HDGR is controlled by the efficiency of homologous recombination. PMID:27257075

Thermal monitoring of a granitic exfoliation sheet and cliff in Yosemite Valley, California (USA)

NASA Astrophysics Data System (ADS)

Guerin, Antoine; Matasci, Battista; Collins, Brian D.; Stock, Greg M.; Derron, Marc-Henri; Jaboyedoff, Michel

2015-04-01

In recent years, new remote sensing techniques such as Terrestrial Laser Scanner (TLS) and Infrared Thermography (IRT) have been used in parallel for rock weathering and weakness detection in slope stability analysis. Nevertheless, the effects of thermal stresses on rock face deformation are still poorly quantified, especially for steep and inaccessible cliffs. To better understand how daily temperature fluctuations influence the behavior of exfoliation joints (i.e., fractures separating exfoliation sheets), we monitored a granitic exfoliation sheet in detail using TLS and IRT over a several day period and also compiled a single TLS-IRT thermal panorama of a larger nearby granitic cliff composed of hundreds to thousands of similar exfoliation sheets. The exfoliation sheet had been previously instrumented for 3.5 years beginning in May 2010 using crackmeters and temperature sensors (Collins and Stock, 2010 and 2012), thereby providing an important baseline to compare our IRT measurements. For several consecutive days, a series of infrared thermal images (collected every 20 min.) of the exfoliation flake (19 m by 4 m by 0.1 m) was taken with a long range IRISYS IRI 4040 thermal imager, as well as several ground-based LiDAR scans, collected at 4 mm point spacing. These pictures were draped on the TLS triangular meshes to quantify the lateral propagation of temperature during the warming and cooling periods. The evolution of vertical and horizontal temperature profiles was also investigated. Results show that the sheet edge undergoes the most significant temperature changes and that warming takes place from the inside part to the border of the flake; conversely cooling takes place from the outside-inwards. Furthermore, the comparison of point clouds indicates a maximum crack aperture of over 1 cm occurring in the afternoon (12:00 to 15:00), when temperatures are at their maximum. The thermal panoramic image of the cliff (600 m wide by 300 m tall) was created using over 100 stitched pictures and also draped on a TLS mesh to generate a 3D color model. This model shows the apparent temperatures measured according to position and surface orientation of the cliff. This rock wall has many recent rockfall scars with lighter colored rock surface; these scars appear as spots of lower temperature surrounded by warmer areas and may undergo increased stress related to the thermal variations. However, these first results must be verified by further testing using calibrated models to distinguish the effects of emissivity and thermal radiation. Subsequently, we plan to fix the thermal camera on a GigaPan EPIC Pro device to take sequences of panoramas during rock cooling and heating and to perform additional investigation on air and water propagation in fractured zones.

High resolution shallow co-seismic and post-seismic slip from the 2016 central Italy earthquake sequence captured using terrestrial laser scanning, structure from motion and low-cost near-field GNSS

NASA Astrophysics Data System (ADS)

Wedmore, L. N. J.; Gregory, L. C.; McCaffrey, K. J. W.; Wilkinson, M.; Walters, R. J.

2017-12-01

Coseismic fault slip in the shallow crust is poorly constrained by many of the conventional tools used to record deformation during earthquakes. GNSS stations are often distributed too far from faults and radar images tend to decorrelate across earthquake surface ruptures. As a result, our understanding of near-field fault slip, shallow slip deficits, and off-fault deformation is limited. We present evidence from the 2016 central Italy earthquake sequence, during which we captured shallow coseismic and post-seismic slip using a combination of terrestrial laser scanning (TLS), structure-from-motion (SfM), and near-field low-cost GNSS recording at 1Hz. Three Mw>6 earthquakes on the 24th August, 26th and 30th October all involved slip on the Mt Vettore-Mt Bove fault system. We collected TLS and SfM point clouds across three separate segments of this system. Each segment experienced a different record of slip during the earthquake sequence; all three ruptured in the largest event (Mw 6.6. on October 30th) but two segments also ruptured during either the 24th August or the 26th October earthquakes. Following the Mw 6.6 earthquake, the faults were repeatedly surveyed using TLS, with the first scan collected c. 5 hours following the earthquake. This represents the first known instance where shallow co-seismic slip has been recorded by pre- and post-event terrestrial laser scanning. Displacement continuously measured across GNSS pairs at 1 Hz demonstrates that permanent near field displacement developed across the fault in the immediate seconds following the initiation of the rupture. However, a discrepancy between on-fault field measurements of surface displacement and the GNSS recorded displacement over 1km long baselines hints at a more complex rupture processes and the possibility of high slip gradients in the shallow subsurface. Displacement measured by differential TLS confirms the presence of these shallow slip deficits but suggests that shallow slip gradient may be controlled by the pattern and timing of slip in the preceding earthquakes. Postseismic afterslip captured by repeated TLS surveys hints at more complicated temporal evolution of nearfield afterslip than is currently predicted by logarithmic models for this process.

Capturing and modelling high-complex alluvial topography with UAS-borne laser scanning

NASA Astrophysics Data System (ADS)

Mandlburger, Gottfried; Wieser, Martin; Pfennigbauer, Martin

2015-04-01

Due to fluvial activity alluvial forests are zones of highest complexity and relief energy. Alluvial forests are dominated by new and pristine channels in consequence of current and historic flood events. Apart from topographic features, the vegetation structure is typically very complex featuring, both, dense under story as well as high trees. Furthermore, deadwood and debris carried from upstream during periods of high discharge within the river channel are deposited in these areas. Therefore, precise modelling of the micro relief of alluvial forests using standard tools like Airborne Laser Scanning (ALS) is hardly feasible. Terrestrial Laser Scanning (TLS), in turn, is very time consuming for capturing larger areas as many scan positions are necessary for obtaining complete coverage due to view occlusions in the forest. In the recent past, the technological development of Unmanned Arial Systems (UAS) has reached a level that light-weight survey-grade laser scanners can be operated from these platforms. For capturing alluvial topography this could bridge the gap between ALS and TLS in terms of providing a very detailed description of the topography and the vegetation structure due to the achievable very high point density of >100 points per m2. In our contribution we demonstrate the feasibility to apply UAS-borne laser scanning for capturing and modelling the complex topography of the study area Neubacher Au, an alluvial forest at the pre-alpine River Pielach (Lower Austria). The area was captured with Riegl's VUX-1 compact time-of-flight laser scanner mounted on a RiCopter (X-8 array octocopter). The scanner features an effective scan rate of 500 kHz and was flown in 50-100 m above ground. At this flying height the laser footprint is 25-50 mm allowing mapping of very small surface details. Furthermore, online waveform processing of the backscattered laser energy enables the retrieval of multiple targets for single laser shots resulting in a dense point cloud of, both, the ground surface and the alluvial vegetation. From the acquired point cloud the following products could be derived: (i) a very high resolution Digital Terrain Model (10 cm raster), (ii) a high resolution model of the water surface of the River Pielach (especially useful for validation of topo-bathymetry LiDAR data) and (iii) a detailed description of the complex vegetation structure.

Acupuncture sensation during ultrasound guided acupuncture needling

PubMed Central

Park, Jongbae J.; Akazawa, Margeaux; Ahn, Jaeki; Beckman-Harned, Selena; Lin, Feng-Chang; Lee, Kwangjae; Fine, Jason; Davis, Robert T; Langevin, Helene

2014-01-01

Background Although acupuncture sensation (also known as de qi) is a cornerstone of traditional acupuncture therapy, most research has accepted the traditional method of defining acupuncture sensation only through subjective patient reports rather than on any quantifiable physiological basis. Purpose To preliminarily investigate the frequency of key sensations experienced while needling to specific, quantifiable tissue levels (TLs) guided by ultrasound (US) imaging. Methods Five participants received needling at two acupuncture points and two control points at four TLs. US scans were used to determine when each TL was reached. Each volunteer completed 32 sets of modified Southampton Needle Sensation Questionnaires. Part one of the study tested sensations experienced at each TL and part two compared the effect of oscillation alone versus oscillation + rotation. Results In all volunteers, the frequency of pricking, sharp sensations was significantly greater in shallower TLs than deeper (p=0.007); the frequency of sensations described as deep, dull and heavy, as spreading, and as electric shocks was significantly greater in deeper TLs than shallower (p=0.002). Sensations experienced did not significantly differ between real and control points within each of three TLs (p>0.05) except TL 4 (p=0.006). The introduction of needle rotation significantly increased deep, dull, heavy sensations, but not pricking and sharp sensations; within each level, the spectrum of sensation experienced during both oscillation + rotation and oscillation alone did not significantly differ between acupuncture and control points. Conclusion The preliminary study indicates a strong connection between acupuncture sensation and both tissue depth and needle rotation. Furthermore, the new methodology has been proven feasible. A further study with an objective measurement is warranted. PMID:21642648

Morphological Changes Along a Dike Landside Slope Sampled by 4d High Resolution Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Herrero-Huertaa, Mónica; Lindenbergh, Roderik; Ponsioen, Luc; van Damme, Myron

2016-06-01

Emergence of light detection and ranging (LiDAR) technology provides new tools for geomorphologic studies improving spatial and temporal resolution of data sampling hydrogeological instability phenomena. Specifically, terrestrial laser scanning (TLS) collects high resolution 3D point clouds allowing more accurate monitoring of erosion rates and processes, and thus, quantify the geomorphologic change on vertical landforms like dike landside slopes. Even so, TLS captures observations rapidly and automatically but unselectively. In this research, we demonstrate the potential of TLS for morphological change detection, profile creation and time series analysis in an emergency simulation for characterizing and monitoring slope movements in a dike. The experiment was performed near Schellebelle (Belgium) in November 2015, using a Leica Scan Station C10. Wave overtopping and overflow over a dike were simulated whereby the loading conditions were incrementally increased and 14 successful scans were performed. The aim of the present study is to analyse short-term morphological dynamic processes and the spatial distribution of erosion and deposition areas along a dike landside slope. As a result, we are able to quantify the eroded material coming from the impact on the terrain induced by wave overtopping which caused the dike failure in a few minutes in normal storm scenarios (Q = 25 l/s/m) as 1.24 m3. As this shows that the amount of erosion is measurable using close range techniques; the amount and rate of erosion could be monitored to predict dike collapse in emergency situation. The results confirm the feasibility of the proposed methodology, providing scalability to a comprehensive analysis over a large extension of a dike (tens of meters).

From Tls Survey to 3d Solid Modeling for Documentation of Built Heritage: the Case Study of Porta Savonarola in Padua

NASA Astrophysics Data System (ADS)

Guarnieri, A.; Fissore, F.; Masiero, A.; Vettore, A.

2017-08-01

It is a matter of fact that 3D visualisation and proper documentation of cultural objects helps to preserve the history and memories of historic buildings, archaeological sites and cultural landscapes, and supports economic growth by stimulating cultural tourism. Preservation, visualisation and recreation of valuable historical and architectural objects and places has always been a serious challenge for specialists in the field. Today, the rapid developments in the fields of close-range photogrammetry, terrestrial laser scanning (TLS) and computer vision (CV) enable to carry out highly accurate 3D models so as to be extremely effective and intuitive for users who have stringent requirements and high expectations. In this note we present the results of the survey and 3D modeling of an ancient gate, Porta Savonarola, located within the remains of the medieval town walls surrounding the historical city center of Padua, Italy. The work has been undertaken within the framework of the project "Walls Multimedia Museum" (WMM) promoted by the local private association "Padua Walls Committee". The goal of the project was to develop a prototype of an "extended" virtual museum, spreaded along most interesting locations of the town walls. The survey of the ancient gate was performed with a Leica C10 and P20 terrestrial laser scanners. Once the acquired scans were properly merged together, a solid model was generated from the global point cloud, and plans and elevations were extracted from it for restoration purposes. A short multimedia video was also created for the "Walls Multimedia Museum", showing both the outer and inner part of the gate. In the paper we will discuss all the steps and challenges addressed to provide the 3D solid model of Porta Savonarola from the TLS data.

2011 Tohoku tsunami video and TLS based measurements: hydrographs, currents, inundation flow velocities, and ship tracks

NASA Astrophysics Data System (ADS)

Fritz, H. M.; Phillips, D. A.; Okayasu, A.; Shimozono, T.; Liu, H.; Takeda, S.; Mohammed, F.; Skanavis, V.; Synolakis, C. E.; Takahashi, T.

2012-12-01

The March 11, 2011, magnitude Mw 9.0 earthquake off the coast of the Tohoku region caused catastrophic damage and loss of life in Japan. The mid-afternoon tsunami arrival combined with survivors equipped with cameras on top of vertical evacuation buildings provided spontaneous spatially and temporally resolved inundation recordings. This report focuses on the surveys at 9 tsunami eyewitness video recording locations in Myako, Kamaishi, Kesennuma and Yoriisohama along Japan's Sanriku coast and the subsequent video image calibration, processing, tsunami hydrograph and flow velocity analysis. Selected tsunami video recording sites were explored, eyewitnesses interviewed and some ground control points recorded during the initial tsunami reconnaissance in April, 2011. A follow-up survey in June, 2011 focused on terrestrial laser scanning (TLS) at locations with high quality eyewitness videos. We acquired precise topographic data using TLS at the video sites producing a 3-dimensional "point cloud" dataset. A camera mounted on the Riegl VZ-400 scanner yields photorealistic 3D images. Integrated GPS measurements allow accurate georeferencing. The original video recordings were recovered from eyewitnesses and the Japanese Coast Guard (JCG). The analysis of the tsunami videos follows an adapted four step procedure originally developed for the analysis of 2004 Indian Ocean tsunami videos at Banda Aceh, Indonesia (Fritz et al., 2006). The first step requires the calibration of the sector of view present in the eyewitness video recording based on ground control points measured in the LiDAR data. In a second step the video image motion induced by the panning of the video camera was determined from subsequent images by particle image velocimetry (PIV) applied to fixed objects. The third step involves the transformation of the raw tsunami video images from image coordinates to world coordinates with a direct linear transformation (DLT) procedure. Finally, the instantaneous tsunami surface current and flooding velocity vector maps are determined by applying the digital PIV analysis method to the rectified tsunami video images with floating debris clusters. Tsunami currents up to 11 m/s per second were measured in Kesennuma Bay making navigation impossible. Tsunami hydrographs are derived from the videos based on water surface elevations at surface piercing objects identified in the acquired topographic TLS data. Apart from a dominant tsunami crest the hydrograph at Kamaishi also reveals a subsequent draw down to -10m exposing the harbor bottom. In some cases ship moorings resist the main tsunami crest only to be broken by the extreme draw down and setting vessels a drift for hours. Further we discuss the complex effects of coastal structures on inundation and outflow hydrographs and flow velocities.;

True 3D kinematic analysis for slope instability assessment in the Siq of Petra (Jordan), from high resolution TLS

NASA Astrophysics Data System (ADS)

Gigli, Giovanni; Margottini, Claudio; Spizzichino, Daniele; Ruther, Heinz; Casagli, Nicola

2016-04-01

Most classifications of mass movements in rock slopes use relatively simple, idealized geometries for the basal sliding surface, like planar sliding, wedge sliding, toppling or columnar failures. For small volumes, the real sliding surface can be often well described by such simple geometries. Extended and complex rock surfaces, however, can exhibit a large number of mass movements, also showing various kind of kinematisms. As a consequence, the real situation in large rock surfaces with a complicate geometry is generally very complex and a site depending analysis, such as fieldwork and compass, cannot be comprehensive of the real situation. Since the outstanding development of terrestrial laser scanner (TLS) in recent years, rock slopes can now be investigated and mapped through high resolution point clouds, reaching the resolution of few mm's and accuracy less than a cm in most advanced instruments, even from remote surveying. The availability of slope surface digital data can offer a unique chance to determine potential kinematisms in a wide distributed area for all the investigated geomorphological processes. More in detail the proposed method is based on the definition of least squares fitting planes on clusters of points extracted by moving a sampling cube on the point cloud. If the associated standard deviation is below a defined threshold, the cluster is considered valid. By applying geometric criteria it is possible to join all the clusters lying on the same surface; in this way discontinuity planes can be reconstructed, rock mass geometrical properties are calculated and, finally, potential kinematisms established. The Siq of Petra (Jordan), is a 1.2 km naturally formed gorge, with an irregular horizontal shape and a complex vertical slope, that represents the main entrance to Nabatean archaeological site. In the Siq, discontinuities of various type (bedding, joints, faults), mainly related to geomorphological evolution of the slope, lateral stress released, stratigraphic setting and tectonic activity can be recognized. As a consequence, rock-falls have been occurring, even recently, with unstable rock mass volumes ranging from 0.1 m3 up to over some hundreds m3. Slope instability, acceleration of crack deformation and consequent increasing of rock-fall hazard conditions, could threaten the safety of tourist as well as the integrity of the heritage. 3D surface model coming from Terrestrial Laser Scanner acquisitions was developed almost all over the site of Petra, including the Siq. Comprehensively, a point cloud of five billion points was generated making the site of Petra likely the largest scanned archaeological site in the word. As far as the Siq, the scanner was positioned on the path floor at intervals of not more than 10 meters from each station. The total number of scans in the Siq was 220 with an average point cloud interval of approximately 3 cm. Subsequently, for the definition of the main rockfall source areas, a spatial kinematic analysis for the whole Siq has been performed, by using discontinuity orientation data extracted from the point cloud by means of the software Diana. Orientation, number of sets, spacing/frequency, persistence, block size and scale dependent roughness was obtained combining fieldwork and automatic analysis. This kind of analysis is able to establish where a particular instability mechanism is kinematically feasible, given the geometry of the slope, the orientation of discontinuities and shear strength of the rock. The final outcome of this project was a detail landslide kinematic index map, reporting main potential instability mechanisms for a given area. The kinematic index was finally calibrated for each instability mechanism (plane failure; wedge failure; block toppling; flexural toppling) surveyed in the site. The latter is including the collapse occurred in May 2015, likely not producing any victim, in a sector clearly identified by the susceptibility maps produced by the analysis.

Effect of geometrical features various objects on the data quality obtained with measured by TLS

NASA Astrophysics Data System (ADS)

Pawłowicz, J. A.

2017-08-01

Collecting data on different building structures using Terrestrial Laser Scanning (TLS) has become in recent years a very popular due to minimize the time required to complete the task as compared to traditional methods. Technical parameters of 3D scanning devices (digitizers) are increasingly being improved, and the accuracy of the data collected allows you to play not only the geometry of an existing object in a digital image, but also enables the assessment of his condition. This is possible thanks to the digitalization of existing objects e.g., a 3D laser scanner, with which is obtained a digital data base is presented in the form of a cloud of points and by using reverse engineering. Measurements using laser scanners depends to a large extent, on the quality of the returning beam reflected from the target surface, towards the receiver. High impact on the strength and quality of the beam returning to the geometric features of the object. These properties may contribute to the emergence of some, sometimes even serious errors during scanning of various shapes. The study defined the effect of the laser beam distortion during the measurement objects with the same material but with different geometrical features on their three-dimensional imaging obtained from measurements made using TLS. We present the problem of data quality, dependent on the deflection of the beam intensity and shape of the object selected examples. The knowledge of these problems allows to obtain valuable data necessary for the implementation of digitization and the visualization of virtually any building structure made of any materials. The studies has been proven that the increase in the density of scanning does not affect the values of mean square error. The increase in the angle of incidence of the beam onto a flat surface, however, causes a decrease in the intensity of scattered radiation that reaches the receiver. The article presents an analysis of the laser beam reflected from broken at different angles surface. Scan quality was assessed using check the density of the number of points on the test object’s surface.

RIS4E at Kilauea's December 1974 Flow: Lava Flow Texture LiDAR Signatures

NASA Astrophysics Data System (ADS)

Whelley, P.; Garry, W. B.; Scheidt, S. P.; Bleacher, J. E.; Hamilton, C.

2015-12-01

High-resolution point clouds and digital terrain models (DTMs) are used to investigate lava textures on the Big Island of Hawaii. Lava texture (e.g., ´áā and pāhoehoe) depends significantly on eruption conditions, and it is therefore instructive, if accurately determined. In places where field investigations are prohibitive (e.g., on other planets and remote regions of Earth) lava texture must be assessed from remote sensing data. A reliable method for doing so remains elusive. The December 1974 flow from Kilauea, in the Kau desert, presents an excellent field site to develop techniques for identifying lava texture. The eruption is young and the textures are well preserved. We present results comparing properties of lava textures observed in Terrestrial Laser Scanning (TLS) data. The authors collected the TLS data during May 2014 and June 2015 field seasons. Scans are a quantitative representation of what a geologist, or robotic system, sees "on the ground" and provides "ground truth" for airborne or orbital remote sensing analysis by enabling key parameters of lava morphology to be quantified. While individual scans have a heterogeneous point density, multiple scans are merged such that sub-cm lava textures can be quantified. Results indicate that TLS-derived surface roughness (i.e., de-trended RMS roughness) is useful for differentiating lava textures and assists volcanologic interpretations. As many lava types are quite rough, it is not simply roughness that is the most advantageous parameter for differentiating lava textures; rather co-occurrence patterns in surface roughness are used. Gradually forming textures (e.g., pāhoehoe) are elevated in statistics that measure smoothness (e.g., homogeneity) while lava with disrupted crusts (e.g., slabby and platy flow) have more random distributions of roughness (i.e., high entropy). A similar technique will be used to analyze high-resolution DTMs of martian lava flows using High Resolution Imaging Science Experiment DTMs. This work will lead to faster and more reliable volcanic mapping efforts for planetary exploration as well as terrestrial geohazards.

Not All Trees Sleep the Same—High Temporal Resolution Terrestrial Laser Scanning Shows Differences in Nocturnal Plant Movement

PubMed Central

Zlinszky, András; Molnár, Bence; Barfod, Anders S.

2017-01-01

Circadian leaf movements are widely known in plants, but nocturnal movement of tree branches were only recently discovered by using terrestrial laser scanning (TLS), a high resolution three-dimensional surveying technique. TLS uses a pulsed laser emitted in a regular scan pattern for rapid measurement of distances to the targets, thus producing three dimensional point cloud models of sub-centimeter resolution and accuracy in a few minutes. Here, we aim to gain an overview of the variability of circadian movement of small trees across different taxonomic groups, growth forms and leaf anatomies. We surveyed a series of 18 full scans over a 12-h night period to measure nocturnal changes in shape simultaneously for an experimental setup of 22 plants representing different species. Resulting point clouds were evaluated by comparing changes in height percentiles of laser scanning points belonging to the canopy. Changes in crown shape were observed for all studied trees, but clearly distinguishable sleep movements are apparently rare. Ambient light conditions were continuously dark between sunset (7:30 p.m.) and sunrise (6:00 a.m.), but most changes in movement direction occurred during this period, thus most of the recorded changes in crown shape were probably not controlled by ambient light. The highest movement amplitudes, for periodic circadian movement around 2 cm were observed for Aesculus and Acer, compared to non-periodic continuous change in shape of 5 cm for Gleditschia and 2 cm for Fargesia. In several species we detected 2–4 h cycles of minor crown movement of 0.5–1 cm, which is close to the limit of our measurement accuracy. We present a conceptual framework for interpreting observed changes as a combination of circadian rhythm with a period close to 12 h, short-term oscillation repeated every 2–4 h, aperiodic continuous movement in one direction and measurement noise which we assume to be random. Observed movement patterns are interpreted within this framework, and connections with morphology and taxonomy are proposed. We confirm the existence of overnight “sleep” movement for some trees, but conclude that circadian movement is a variable phenomenon in plants, probably controlled by a complex combination of anatomical, physiological, and morphological factors. PMID:29104583

Utilizing remote sensing data for modeling water and heat regimes of the Black Earth Region territory of the European Russia

NASA Astrophysics Data System (ADS)

Muzylev, Eugene; Startseva, Zoya; Uspensky, Alexander; Volkova, Elena; Uspensky, Sergey

2014-05-01

At present physical-mathematical modeling processes of water and heat exchange between vegetation covered land surfaces and atmosphere is the most appropriate method to describe peculiarities of water and heat regime formation for large territories. The developed model of such processes (Land Surface Model, LSM) is intended for calculation evaporation, transpiration by vegetation, soil water content and other water and heat regime characteristics, as well as distributions of the soil temperature and humidity in depth utilizing remote sensing data from satellites on land surface and meteorological conditions. The model parameters and input variables are the soil and vegetation characteristics and the meteorological characteristics, correspondingly. Their values have been determined from ground-based observations or satellite-based measurements by radiometers AVHRR/NOAA, MODIS/EOS Terra and Aqua, SEVIRI/Meteosat-9, -10. The case study has been carried out for the part of the agricultural Central Black Earth region with coordinates 49.5 deg. - 54 deg. N, 31 deg. - 43 deg. E and a total area of 227,300 km2 located in the steppe-forest zone of the European Russia for years 2009-2012 vegetation seasons. From AVHRR data there have been derived the estimates of three types of land surface temperature (LST): land surface skin temperature Tsg, air-foliage temperature Ta and efficient radiation temperature Ts.eff, emissivity E, normalized vegetation index NDVI, vegetation cover fraction B, leaf area index LAI, cloudiness and precipitation. From MODIS data the estimates of LST Tls, E, NDVI and LAI have been obtained. The SEVIRI data have been used to build the estimates of Tls, Ta, E, LAI and precipitation. Previously developed method and technology of above AVHRR-derived estimates have been improved and adapted to the study area. To check the reliability of the Ts.eff and Ta estimations for named seasons the error statistics of their definitions has been analyzed through comparison with data of observations at agricultural meteorological stations of the study region. The mentioned MODIS-based remote sensing products for the same vegetation seasons have been built using data downloaded from the website LP DAAC (NASA). Reliability of the MODIS-derived Tls estimates have been confirmed by results of comparison with similar estimates from synchronous AVHRR, SEVIRI and ground-based data. To retrieve Tls and E from SEVIRI data at daylight and nighttime there have been developed the method and technology of thematic processing these data in IR channels NN 9, 10 (10.8 and 12.0 nm) at three successive times under cloud-free conditions without using exact values of E. This technology has been also adapted to the study area. Analysis of reliability of Tls estimation have been carried out through comparing with synchronous SEVIRI-derived Tls estimates obtained at Land Surface Analysis Satellite Applications Facility (LSA SAF, Lisbon, Portugal) and MODIS-derived Tls estimates. When the first comparison daily - or monthly-averaged values of RMS deviation have not been exceeded 2 deg. C for various dates and months during years 2009-2012 vegetation seasons. RMS deviation of Tls(SEVIRI) from Tls(MODIS) has been in the range of 1.0-3.0 deg. C. The method and technology have been also developed and tested to define Ta values from SEVIRI data at daylight and nighttime. This method is based on using satellite-derived estimates of Tls and regression relationship between Tls and ground-measured values of Ta. Comparison of satellite-based Ta estimates with data of synchronous standard term ground-based observations at the network of meteorological stations of the study area for summer periods of 2009-2012 has given RMS deviation values in the range of 1.8-3.0 deg. C. Formed archive of satellite products has been also supplemented with array of LAI estimates retrieved from SEVIRI data at LSA SAF for the study area and growing seasons 2011-2012. The possibility is shown to use the developed Multi Threshold Method (MTM) for generating the AVHRR- and SEVIRI-based estimates of daily and monthly precipitation amounts for the region of interest The MTM provides the cloud detection and identification of cloud types, estimation of the maximum liquid water content and cloud layer water content, allocation of precipitation zones and determination of instantaneous maximum of precipitation intensities in the pixel range around the clock throughout the year independently of the land surface type. In developing procedures of utilizing satellite estimates of precipitation during the vegetation season in the model there have been built up algorithms and programs of transition from estimating the rainfall intensity to assessment of their daily values. The comparison of the daily, monthly and seasonal AVHRR- and SEVIRI-derived precipitation sums with similar values retrieved from network ground-based observations using weighting interpolation procedure have been carried out. Agreement of all three evaluations is satisfactory. To assimilate remote sensing products into the model the special techniques have been developed including: 1) replacement of ground-measured model parameters LAI and B by their satellite-derived estimates. The possibility of such replacement has been confirmed through various comparisons of: a) LAI behavior for ground- and satellite-derived values; b) modeled values of Ts and Tf , satellite-based estimates of Ts.eff, Tls and Ta and ground-based measurements of LST; c) modeled and measured values of soil water content W and evapotranspiration Ev; 2) utilization of satellite-derived values of LSTs Ts.eff, Tls and Ta, and estimates of precipitation as the input model variables instead of the respective ground-measured temperatures and rainfall when assessing the accuracy of soil water content, evapotranspiration and soil temperature calculations; 3) accounting for the spatial variability of satellite-based LAI, B, LST and precipitation estimates by entering their area-distributed values into the model. For years 2009-2012 vegetation seasons there have been calculated the characteristics of the water and heat regimes of the region under investigation utilizing satellite estimates of vegetation characteristics, LST and precipitation in the model. The calculation results have shown that the discrepancies of evapotranspiration and soil water content values are within acceptable limits.

Fast and Robust STEM Reconstruction in Complex Environments Using Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Wang, D.; Hollaus, M.; Puttonen, E.; Pfeifer, N.

2016-06-01

Terrestrial Laser Scanning (TLS) is an effective tool in forest research and management. However, accurate estimation of tree parameters still remains challenging in complex forests. In this paper, we present a novel algorithm for stem modeling in complex environments. This method does not require accurate delineation of stem points from the original point cloud. The stem reconstruction features a self-adaptive cylinder growing scheme. This algorithm is tested for a landslide region in the federal state of Vorarlberg, Austria. The algorithm results are compared with field reference data, which show that our algorithm is able to accurately retrieve the diameter at breast height (DBH) with a root mean square error (RMSE) of ~1.9 cm. This algorithm is further facilitated by applying an advanced sampling technique. Different sampling rates are applied and tested. It is found that a sampling rate of 7.5% is already able to retain the stem fitting quality and simultaneously reduce the computation time significantly by ~88%.

Comparison of Single and Multi-Scale Method for Leaf and Wood Points Classification from Terrestrial Laser Scanning Data

NASA Astrophysics Data System (ADS)

Wei, Hongqiang; Zhou, Guiyun; Zhou, Junjie

2018-04-01

The classification of leaf and wood points is an essential preprocessing step for extracting inventory measurements and canopy characterization of trees from the terrestrial laser scanning (TLS) data. The geometry-based approach is one of the widely used classification method. In the geometry-based method, it is common practice to extract salient features at one single scale before the features are used for classification. It remains unclear how different scale(s) used affect the classification accuracy and efficiency. To assess the scale effect on the classification accuracy and efficiency, we extracted the single-scale and multi-scale salient features from the point clouds of two oak trees of different sizes and conducted the classification on leaf and wood. Our experimental results show that the balanced accuracy of the multi-scale method is higher than the average balanced accuracy of the single-scale method by about 10 % for both trees. The average speed-up ratio of single scale classifiers over multi-scale classifier for each tree is higher than 30.

Methodological considerations of terrestrial laser scanning for vegetation monitoring in the sagebrush steppe

USGS Publications Warehouse

Anderson, Kyle E.; Glenn, Nancy; Spaete, Lucas; Shinneman, Douglas; Pilliod, David S.; Arkle, Robert; McIlroy, Susan; Derryberry, DeWayne R.

2017-01-01

Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor’s line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner’s line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.

Methodological considerations of terrestrial laser scanning for vegetation monitoring in the sagebrush steppe.

PubMed

Anderson, Kyle E; Glenn, Nancy F; Spaete, Lucas P; Shinneman, Douglas J; Pilliod, David S; Arkle, Robert S; McIlroy, Susan K; Derryberry, DeWayne R

2017-10-23

Terrestrial laser scanning (TLS) provides fast collection of high-definition structural information, making it a valuable field instrument to many monitoring applications. A weakness of TLS collections, especially in vegetation, is the occurrence of unsampled regions in point clouds where the sensor's line-of-sight is blocked by intervening material. This problem, referred to as occlusion, may be mitigated by scanning target areas from several positions, increasing the chance that any given area will fall within the scanner's line-of-sight from at least one position. Because TLS collections are often employed in remote regions where the scope of sampling is limited by logistical factors such as time and battery power, it is important to design field protocols which maximize efficiency and support increased quantity and quality of the data collected. This study informs researchers and practitioners seeking to optimize TLS sampling methods for vegetation monitoring in dryland ecosystems through three analyses. First, we quantify the 2D extent of occluded regions based on the range from single scan positions. Second, we measure the efficacy of additional scan positions on the reduction of 2D occluded regions (area) using progressive configurations of scan positions in 1 ha plots. Third, we test the reproducibility of 3D sampling yielded by a 5-scan/ha sampling methodology using redundant sets of scans. Analyses were performed using measurements at analysis scales of 5 to 50 cm across the 1-ha plots, and we considered plots in grass and shrub-dominated communities separately. In grass-dominated plots, a center-scan configuration and 5 cm pixel size sampled at least 90% of the area up to 18 m away from the scanner. In shrub-dominated plots, sampling at least 90% of the area was only achieved within a distance of 12 m. We found that 3 and 5 scans/ha are needed to sample at least ~ 70% of the total area (1 ha) in the grass and shrub-dominated plots, respectively, using 5 cm pixels to measure sampling presence-absence. The reproducibility of 3D sampling provided by a 5 position scan layout across 1-ha plots was 50% (shrub) and 70% (grass) using a 5-cm voxel size, whereas at the 50-cm voxel scale, reproducibility of sampling was nearly 100% for all plot types. Future studies applying TLS in similar dryland environments for vegetation monitoring may use our results as a guide to efficiently achieve sampling coverage and reproducibility in datasets.

Rockfall monitoring by Terrestrial Laser Scanning - case study of the basaltic rock face at Castellfollit de la Roca (Catalonia, Spain)

NASA Astrophysics Data System (ADS)

Abellán, A.; Vilaplana, J. M.; Calvet, J.; García-Sellés, D.; Asensio, E.

2011-03-01

This case study deals with a rock face monitoring in urban areas using a Terrestrial Laser Scanner. The pilot study area is an almost vertical, fifty meter high cliff, on top of which the village of Castellfollit de la Roca is located. Rockfall activity is currently causing a retreat of the rock face, which may endanger the houses located at its edge. TLS datasets consist of high density 3-D point clouds acquired from five stations, nine times in a time span of 22 months (from March 2006 to January 2008). The change detection, i.e. rockfalls, was performed through a sequential comparison of datasets. Two types of mass movement were detected in the monitoring period: (a) detachment of single basaltic columns, with magnitudes below 1.5 m3 and (b) detachment of groups of columns, with magnitudes of 1.5 to 150 m3. Furthermore, the historical record revealed (c) the occurrence of slab failures with magnitudes higher than 150 m3. Displacements of a likely slab failure were measured, suggesting an apparent stationary stage. Even failures are clearly episodic, our results, together with the study of the historical record, enabled us to estimate a mean detachment of material from 46 to 91.5 m3 year-1. The application of TLS considerably improved our understanding of rockfall phenomena in the study area.

2011 Tohoku tsunami hydrographs, currents, flow velocities and ship tracks based on video and TLS measurements

NASA Astrophysics Data System (ADS)

Fritz, Hermann M.; Phillips, David A.; Okayasu, Akio; Shimozono, Takenori; Liu, Haijiang; Takeda, Seiichi; Mohammed, Fahad; Skanavis, Vassilis; Synolakis, Costas E.; Takahashi, Tomoyuki

2013-04-01

The March 11, 2011, magnitude Mw 9.0 earthquake off the Tohoku coast of Japan caused catastrophic damage and loss of life to a tsunami aware population. The mid-afternoon tsunami arrival combined with survivors equipped with cameras on top of vertical evacuation buildings provided fragmented spatially and temporally resolved inundation recordings. This report focuses on the surveys at 9 tsunami eyewitness video recording locations in Myako, Kamaishi, Kesennuma and Yoriisohama along Japan's Sanriku coast and the subsequent video image calibration, processing, tsunami hydrograph and flow velocity analysis. Selected tsunami video recording sites were explored, eyewitnesses interviewed and some ground control points recorded during the initial tsunami reconnaissance in April, 2011. A follow-up survey in June, 2011 focused on terrestrial laser scanning (TLS) at locations with high quality eyewitness videos. We acquired precise topographic data using TLS at the video sites producing a 3-dimensional "point cloud" dataset. A camera mounted on the Riegl VZ-400 scanner yields photorealistic 3D images. Integrated GPS measurements allow accurate georeferencing. The original video recordings were recovered from eyewitnesses and the Japanese Coast Guard (JCG). The analysis of the tsunami videos follows an adapted four step procedure originally developed for the analysis of 2004 Indian Ocean tsunami videos at Banda Aceh, Indonesia (Fritz et al., 2006). The first step requires the calibration of the sector of view present in the eyewitness video recording based on ground control points measured in the LiDAR data. In a second step the video image motion induced by the panning of the video camera was determined from subsequent images by particle image velocimetry (PIV) applied to fixed objects. The third step involves the transformation of the raw tsunami video images from image coordinates to world coordinates with a direct linear transformation (DLT) procedure. Finally, the instantaneous tsunami surface current and flooding velocity vector maps are determined by applying the digital PIV analysis method to the rectified tsunami video images with floating debris clusters. Tsunami currents up to 11 m/s were measured in Kesennuma Bay making navigation impossible (Fritz et al., 2012). Tsunami hydrographs are derived from the videos based on water surface elevations at surface piercing objects identified in the acquired topographic TLS data. Apart from a dominant tsunami crest the hydrograph at Kamaishi also reveals a subsequent draw down to minus 10m exposing the harbor bottom. In some cases ship moorings resist the main tsunami crest only to be broken by the extreme draw down and setting vessels a drift for hours. Further we discuss the complex effects of coastal structures on inundation and outflow hydrographs and flow velocities. Lastly a perspective on the recovery and reconstruction process is provided based on numerous revisits of identical sites between April 2011 and July 2012.

Monitoring gully change: A comparison of airborne and terrestrial laser scanning using a case study from Aratula, Queensland

NASA Astrophysics Data System (ADS)

Goodwin, Nicholas R.; Armston, John D.; Muir, Jasmine; Stiller, Issac

2017-04-01

Airborne laser scanning (ALS) and terrestrial laser scanning (TLS) technologies capture spatially detailed estimates of surface topography and when collected multi-temporally can be used to assess geomorphic change. The sensitivity and repeatability of ALS measurements to characterise geomorphic change in topographically complex environments such as gullies; however, remains an area lacking quantitative research. In this study, we captured coincident ALS and TLS datasets to assess their ability and synergies to detect geomorphic change for a gully located in Aratula, southeast Queensland, Australia. We initially used the higher spatial density and ranging accuracy of TLS to provide an assessment of the Digital Elevation Models (DEM) derived from ALS within a gully environment. Results indicated mean residual errors of 0.13 and 0.09 m along with standard deviation (SD) of residual errors of 0.20 and 0.16 m using pixel sizes of 0.5 and 1.0 m, respectively. The positive mean residual errors confirm that TLS data consistently detected deeper sections of the gully than ALS. We also compared the repeatability of ALS and TLS for characterising gully morphology. This indicated that the sensitivity to detect change using ALS is substantially lower than TLS, as expected, and that the ALS survey characteristics influence the ability to detect change. Notably, we found that using one ALS transect (mean density of 5 points / m2) as opposed to three transects increased the SD of residual error by approximately 30%. The supplied classification of ALS ground points was also demonstrated to misclassify gully features as non-ground, with minimum elevation filtering found to provide a more accurate DEM of the gully. The number and placement of terrestrial laser scans were also found to influence the derived DEMs. Furthermore, we applied change detection using two ALS data captures over a four year period and four TLS field surveys over an eight month period. This demonstrated that ALS can detect large scale erosional changes with head cutting of gully branches migrating approximately 10 m upslope. In comparison, TLS captured smaller scale intra-annual erosional patterns largely undetectable by the ALS dataset with a large rainfall event coinciding with the highest volumetric change (net change > 46 m3). Overall, these findings reaffirm the importance of quantifying DEM errors and demonstrate that ALS is unlikely to detect subtle geomorphic changes (< 0.45 m) potentially missing significant sediment change. TLS was able to detect more subtle intra-annual changes but was limited in its spatial coverage. This suggests TLS and ALS surveys are complementary technologies and when used together can provide a more detailed understanding of gully processes at different temporal and spatial scales, provided the inherent errors are taken into account.

Wetland Microtopographic Structure is Revealed with Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Diamond, J.; Stovall, A. E.; Mclaughlin, D. L.; Slesak, R.

2017-12-01

Wetland microtopographic structure and its function has been the subject of research for decades, and several investigations suggest that microtopography is generated by autogenic ecohydrologic processes. But due to the difficulty of capturing the true spatial variability of wetland microtopography, many of the hypotheses for self-organization have remained elusive to test. We employ a novel method of Terrestrial Laser Scanning (TLS) that reveals an unprecedented high-resolution (<0.5 cm) glimpse at the true spatial structure of wetland microtopography in 10 black ash (Fraxinus nigra) stands of northern Minnesota, USA. Here we present the first efforts to synthesize this information and show that TLS provides a good representation of real microtopographic structure, where TLS accurately measured hummock height, but occlusion of low points led to a slight negative bias. We further show that TLS can accurately locate microtopographic high points (hummocks), as well as estimate their height and area. Using these new data, we estimate distributions in both microtopographic elevation and hummock area in each wetland and relate these to monitored hydrologic regime; in doing so, we test hypotheses linking emergent microtopographic patterns to putative hydrologic controls. Finally, we discuss future efforts to enumerate consequent influences of microtopography on wetland systems (soil properties and vegetation composition).

Spatial bedrock erosion distribution in a natural gorge

NASA Astrophysics Data System (ADS)

Beer, A. R.; Turowski, J. M.; Kirchner, J. W.

2015-12-01

Quantitative analysis of morphological evolution both in terrestrial and planetary landscapes is of increasing interest in the geosciences. In mountainous regions, bedrock channel formation as a consequence of the interaction of uplift and erosion processes is fundamental for the entire surface evolution. Hence, the accurate description of bedrock channel development is important for landscape modelling. To verify existing concepts developed in the lab and to analyse how in situ channel erosion rates depend on the interrelations of discharge, sediment transport and topography, there is a need of highly resolved topographic field data. We analyse bedrock erosion over two years in a bedrock gorge downstream of the Gorner glacier above the town of Zermatt, Switzerland. At the study site, the Gornera stream cuts through a roche moutonnée in serpentine rock of 25m length, 5m width and 8m depth. We surveyed bedrock erosion rates using repeat terrestrial laser scanning (TLS) with an average point spacing of 5mm. Bedrock erosion rates in direction of the individual surface normals were studied directly on the scanned point clouds applying the M3C2 algorithm (Lague et al., 2013, ISPRS). The surveyed erosion patterns were compared to a simple stream erosivity visualisation obtained from painted bedrock sections at the study location. Spatially distributed erosion rates on bedrock surfaces based on millions of scan points allow deduction of millimeter-scale mean annual values of lateral erosion, incision and downstream erosion on protruding streambed surfaces. The erosion rate on a specific surface point is shown to depend on the position of this surface point in the channel's cross section, its height above the streambed and its spatial orientation to the streamflow. Abrasion by impacting bedload was likely the spatially dominant erosion process, as confirmed by the observed patterns along the painted bedrock sections. However, a single plucking event accounted for the half of the total eroded material. Our results demonstrate the practicability of TLS for highly resolved spatio-temporal erosion monitoring in the field and quantitatively confirm concepts of spatially varying erosion rates based current thinking. Furthermore, we introduce an easy-to-apply method for qualitative spatial erosion detection by paint.

Application of terrestrial laser scanner on tidal flat morphology at a typhoon event timescale

NASA Astrophysics Data System (ADS)

Xie, Weiming; He, Qing; Zhang, Keqi; Guo, Leicheng; Wang, Xianye; Shen, Jian; Cui, Zheng

2017-09-01

Quantification of tidal flat morphological changes at varying timescales is critical from a management point of view. High-resolution tidal flat morphology data, including those for mudflats and salt-marshes, are rare due to monitoring difficulty by traditional methods. Recent advances in Terrestrial Laser Scanner (TLS) technology allow rapid acquisition of high-resolution and large-scale morphological data, but it remains problematic for its application on salt-marshes due to the presence of dense vegetation. In this study, we applied a TLS system to retrieve high-accuracy digital elevation models in a tidal flat of the Yangtze Estuary by using a robust and accurate Progressive Morphological filter (PM) to separate ground and non-ground points. Validations against GPS-supported RTK measurements suggested remarkable performance. In this case the average estimation error was about 0.3 cm, while the Root Mean Square Error (RMSE) was 2.0 cm. We conducted three TLS surveys on the same field including salt-marshes and mudflats at the time points 5 days before, 3 days after, and 45 days after a typhoon event. The retrieved data showed that the mudflats suffered from profound erosion while the salt-marshes slightly accreted during the typhoon period. The average elevation change of the total area was about - 4 cm (- 0.28 cm per day). However, both the mudflats and salt-marshes deposited in the post-typhoon period and the accretion over salt-marshes occurred at a higher rate than that during the typhoon. The elevation of the total area increased by 15.9 cm (0.37 cm per day), suggesting fast recovery under calm conditions. Quantification of the erosion and deposition rates was aided by the high quality TLS data. This study shows the effectiveness of TLS in quantifying morphological changes of tidal flats at an event (and post-event) timescale. The data and analysis also provide sound evidence on vegetation impact in stimulating salt-marsh development and restoration, shedding lights on bio-morphological interactions.

High-resolution Terrestrial Laser Scanning (TLS) on cushion peatlands - a case study from the Peruvian Andes

NASA Astrophysics Data System (ADS)

Forbriger, M.; Höfle, B.; Siart, C.; Schittek, K.; Bubenzer, O.

2012-04-01

So-called cushion peatlands located in the high mountain areas of the Peruvian Andes are unique ecotopes, which are of major importance for both palaeoenvironmental reconstructions and permanent water supply of the valley oases in the presently hyperarid Peruvian desert. In this context, a case study was performed on the Cerro Llamoca peatland (southern Peru, province Lucanas, 14° S) in the uppermost reaches of the Rió Grande catchment area (4000-4450 m a.s.l.) within the framework of the BMBF-funded project 'Andean Transect - Climate Sensitivity of pre-Columbian Man-Environment-Systems' and serves as a basis for a long-term, multitemporal observation study. As small-scale geomorphologic investigations require high-resolution elevation data, which is still not available for this remote study site, and local microrelief is characterised by features not visible from aerial view (e.g. channel cuttings within the peatland), terrestrial laser scanning (TLS) was applied. Data acquisition was carried out with one of the latest 'time-of-flight'-scanners (Riegl VZ-400). A total of 46 positions was recorded to capture the whole area of interest leading to more 370 million single laser points within an area of approximately 1,8 km2. Registration of scan positions was performed by means of GPS measurements, coarse registration and the iterative closest point (ICP) algorithm provided by the plugin Multi-Station Adjustment within the RiSCAN PRO software (Riegl). The large amount of output data required the use of special LiDAR software for further processing and digital elevation raster generation (OPALS software). The defined target raster resolution was set to values between 0.1 and 2 m depending on the average point density. It is important to have access to the original point cloud including additional laser point attributes (e.g. signal amplitude and echo width) for digital terrain model generation (i.e. terrain point filtering) and geomorphologic mapping by means of segmentation and object-based classification. Furthermore, multitemporal investigation of the study area requires co-registration of the datasets of the different epochs to each other, which is best performed using the original point cloud. This guarantees high accuracy of elevation change estimation and, thus, volume change assessment. Geomorphologic microscale features can be analyzed in, by now, inaccessible details and therefore also short term events with only little impact can be investigated. The outcomes demonstrate the great suitability of terrestrial laser scanning for fast and high-precision mapping, particularly in isolated terrains at high altitudes like the Peruvian Altiplano. Future investigations will focus on data fusion of surface and subsurface data derived from geophysical measurements. In combination with vibra coring, chronometric dating and geochemical analysis palaeoenvironmental 3D reconstructions over time are possible. With regard to recent water storage capacity, new approximations can be carried out. Additionally, the determination of erosion and degradation rates will be possible at high resolutions.

Characterizing the geomorphic setting of precariously balanced rocks using terrestrial laser scanning technology

NASA Astrophysics Data System (ADS)

Haddad, D. E.; Arrowsmith, R.

2009-12-01

Terrestrial laser scanning (TLS) technology is rapidly becoming an effective three-dimensional imaging tool. Precariously balanced rocks are a subset of spheroidally weathered boulders. They are balanced on bedrock pedestals and are formed in upland drainage basins and pediments of exhumed plutons. Precarious rocks are used as negative evidence of earthquake-driven extreme ground motions. Field surveys of PBRs are coupled with cosmogenic radionuclide (CRN) surface exposure dating techniques to determine their exhumation rates. These rates are used in statistical simulations to estimate the magnitudes and recurrences of earthquake-generated extreme ground shaking as a means to physically validate seismic hazard analyses. However, the geomorphic setting of PBRs in the landscape is poorly constrained when interpreting their exhumation rates from CRN surface exposure dates. Are PBRs located on steep or gentle hillslopes? Are they located near drainages or hillslope crests? What geomorphic processes control the spatial distribution of PBRs in a landscape, and where do these processes dominate? Because the fundamental hillslope transport laws are largely controlled by local hillslope gradient and contributing area, the location of a PBR is controlled by the geomorphic agents and their rates acting on it. Our latest efforts involve using a combination of TLS and airborne laser swath mapping (ALSM) to characterize the geomorphic situation of PBRs. We used a Riegl LPM 800i (LPM 321) terrestrial laser scanner to scan a ~1.5 m tall by ~1 m wide precariously balanced rock in the Granite Dells, central Arizona. The PBR was scanned from six positions, and the scans were aligned to a point cloud totaling 3.4M points. We also scanned a ~50 m by ~150 m area covering PBR hillslopes from five scan positions. The resulting 5.5M points were used to create a digital terrain model of precarious rocks and their hillslopes. Our TLS- and ALSM-generated surface models and DEMs provide a unique opportunity to understand the roles of hillslope-scale geomorphic processes in the PBR life cycle. Initial results show that the studied PBRs are located near hillslope crests ~33 m above the nearest drainages and on slopes >17°. No PBRs were found on gentle slopes adjacent to channels, suggesting that hillslope crests are conducive to preserving PBRs. Understanding these landscape morphometrics for precarious rock zones is critical to building our confidence in interpreting PBR exhumation rates from CRN dating techniques, thus improving the evaluation of seismic hazard analyses.

On the Quality of Point-Clouds Derived from Sfm-Photogrammetry Applied to UAS Imagery

NASA Astrophysics Data System (ADS)

Carbonneau, P.; James, T.

2014-12-01

Structure from Motion photogrammetry (SfM-photogrammetry) recently appeared in environmental sciences as an impressive tool allowing for the creation of topographic data from unstructured imagery. Several authors have tested the performance of SfM-photogrammetry vs that of TLS or dGPS. Whilst the initial results were very promising, there is currently a growing awareness that systematic deformations occur in DEMs and point-clouds derived from SfM-photogrammetry. Notably, some authors have identified a systematic doming manifest as an increasing error vs distance to the model centre. Simulation studies have confirmed that this error is due to errors in the calibration of camera distortions. This work aims to further investigate these effects in the presence of real data. We start with a dataset of 220 images acquired from a sUAS. After obtaining an initial self-calibration of the camera lens with Agisoft Photoscan, our method consists in applying systematic perturbations to 2 key lens parameters: Focal length and the k1 distortion parameter. For each perturbation, a point-cloud was produced and compared to LiDAR data. After deriving the mean and standard deviation of the error residuals (ɛ), a 2nd order polynomial surface was fitted to the errors point-cloud and the peak ɛ defined as the mathematical extrema of this surface. The results are presented in figure 1. This figure shows that lens perturbations can induce a range of errors with systematic behaviours. Peak ɛ is primarily controlled by K1 with a secondary control exerted by the focal length. These results allow us to state that: To limit the peak ɛ to 10cm, the K1 parameter must be calibrated to within 0.00025 and the focal length to within 2.5 pixels (≈10 µm). This level of calibration accuracy can only be achieved with proper design of image acquisition and control network geometry. Our main point is therefore that SfM is not a bypass to a rigorous and well-informed photogrammetric approach. Users of SfM-photogrammetry will still require basic training and knowledge in the fundamentals of photogrammetry. This is especially true for applications where very small topographic changes need to be detected or where gradient-sensitive processes need to be modelled.

Do High Dynamic Range threatments improve the results of Structure from Motion approaches in Geomorphology?

NASA Astrophysics Data System (ADS)

Gómez-Gutiérrez, Álvaro; Juan de Sanjosé-Blasco, José; Schnabel, Susanne; de Matías-Bejarano, Javier; Pulido-Fernández, Manuel; Berenguer-Sempere, Fernando

2015-04-01

In this work, the hypothesis of improving 3D models obtained with Structure from Motion (SfM) approaches using images pre-processed by High Dynamic Range (HDR) techniques is tested. Photographs of the Veleta Rock Glacier in Spain were captured with different exposure values (EV0, EV+1 and EV-1), two focal lengths (35 and 100 mm) and under different weather conditions for the years 2008, 2009, 2011, 2012 and 2014. HDR images were produced using the different EV steps within Fusion F.1 software. Point clouds were generated using commercial and free available SfM software: Agisoft Photoscan and 123D Catch. Models Obtained using pre-processed images and non-preprocessed images were compared in a 3D environment with a benchmark 3D model obtained by means of a Terrestrial Laser Scanner (TLS). A total of 40 point clouds were produced, georeferenced and compared. Results indicated that for Agisoft Photoscan software differences in the accuracy between models obtained with pre-processed and non-preprocessed images were not significant from a statistical viewpoint. However, in the case of the free available software 123D Catch, models obtained using images pre-processed by HDR techniques presented a higher point density and were more accurate. This tendency was observed along the 5 studied years and under different capture conditions. More work should be done in the near future to corroborate whether the results of similar software packages can be improved by HDR techniques (e.g. ARC3D, Bundler and PMVS2, CMP SfM, Photosynth and VisualSFM).

High-Resolution Characterization of Intertidal Geomorphology by TLS

NASA Astrophysics Data System (ADS)

Guarnieri, A.; Vettore, A.; Marani, M.

2007-12-01

Observational fluvial geomorphology has greatly benefited in the last decades from the wide availability of digital terrain data obtained by orthophotos and by means of accurate airborne laser scanner data (LiDAR). On the contrary, the spatially-distributed study of the geomorphology of intertidal areas, such as tidal flats and marshes, remains problematic owing to the small relief characterizing such environments, often of the order of a few tens of centimetres, i.e. comparable to the accuracy of state-of-the-art LiDAR data. Here we present the results of Terrestrial Laser Scanner (TLS) acquisitions performed within a tidal marsh in the Venice lagoon. The survey was performed using a Leica HDS 3000 TLS, characterized by a large Field of View (360 deg H x 270 deg V), a low beam divergence (< 6 mm at 50 m) and a nominal accuracy of 6 mm at 50 m. The acquisition was performed at low tide to avoid interferences due to water on the marsh surface and, to minimize shadowing effects due to the tilting of the laser beam (especially in the channel network), the scanner was mounted on a custom-built tripod 3 m above the marsh surface. The area of the marsh, about 100m x 150m, was fully surveyed by just 2 scans. A total amount of about 3 million points was acquired, with an average measurement density of 200 points/m2. In order to reconstruct the geometry of the marsh, the two scans were co-registered using 8 reflective targets as matching points. Such targets were placed within the area of interest and surveyed with high accuracy (2 mm), while their position in the Italian national grid was determined with a double-frequency GPS receiver, in order to georeference the point clouds within an absolute framework. Post-processing of the very high resolution data obtained shows that the laser returns coming from the low vegetation present (about 0.5-1.0 m high) can be satisfactorily separated from those coming from the marsh surface, allowing the construction of a DSM and a DTM. This is important e.g. in eco-geomorphic studies of intertidal environments, where conventional LiDAR technologies cannot easily separate first and last laser returns (because of the low vegetation height) and thus provide models of the surface as well as of the terrain. Furthermore, the DTM is shown to provide unprecedented characterizations of marsh morphology, e.g. regarding the cross-sectional properties of small-scale tidal creeks (widths of the order of 10 cm), previously observable only through conventional topographic surveys, thus not allowing a fully spatially-distributed description of their morphology.

Morphological and structural changes at the Merapi lava dome monitored in 2012-15 using unmanned aerial vehicles (UAVs)

NASA Astrophysics Data System (ADS)

Darmawan, Herlan; Walter, Thomas R.; Brotopuspito, Kirbani Sri; Subandriyo; I Gusti Made Agung Nandaka

2018-01-01

Dome-building volcanoes undergo rapid and profound topographic changes that are important to quantify for the purposes of hazard assessment. However, as hazardous lava domes often develop on high-altitude volcanoes that exhibit steep-sided topography, it is challenging to obtain direct field access and thus to analyze these morphological and structural changes. Merapi Volcano in Indonesia is a type example of such a volcano, as soon after its 2010 eruption, a new lava dome developed. This dome was partially destroyed during six distinct steam-driven explosions that occurred between 2012 and 2014. Here, we investigate the topographic and structural changes associated with these six steam-driven explosions by comparing close-range photogrammetric data obtained before and after these explosions. To accomplish this, we performed two UAV campaigns in 2012 and 2015. By applying the Structure from Motion (SfM) technique, we are able to construct three-dimensional point clouds, assess their quality by comparing them to a terrestrial laser scanning (TLS) dataset, and generate high-resolution Digital Elevation Models (DEMs) and photomosaics. The comparison of these two DEMs and photomosaics reveals changes in topography and the appearance of fractures. In the 2012 dataset, we find a dense fracture network striking to the NNW-SSE. In the post-eruptive 2015 dataset, we see that this NNW-SSE fracture trend is much more strongly expressed; we also detect the formation of aligned and elongated explosion craters, which are associated with the removal of over 200,000 m3 of dome material, most of which ( 70%) was deposited outside the crater region. Therefore, this study suggests that the locations of the steam-driven explosions at Merapi Volcano were controlled by the reactivation of preexisting structures. Moreover, some of the newly developed and reactivated fractures delineate a block on the southern slope of the dome, which could become structurally unstable and potentially lead to rock avalanche hazards. This study therefore demonstrates the significance of characterizing structural fingerprints during the development of lava domes and exemplifies the value of topographic and fracture mapping, which is becoming increasingly feasible when using UAVs, even on high and steep stratovolcanoes. Fig. S2. The density of TLS point cloud dataset.

Combining the 3D model generated from point clouds and thermography to identify the defects presented on the facades of a building

NASA Astrophysics Data System (ADS)

Huang, Yishuo; Chiang, Chih-Hung; Hsu, Keng-Tsang

2018-03-01

Defects presented on the facades of a building do have profound impacts on extending the life cycle of the building. How to identify the defects is a crucial issue; destructive and non-destructive methods are usually employed to identify the defects presented on a building. Destructive methods always cause the permanent damages for the examined objects; on the other hand, non-destructive testing (NDT) methods have been widely applied to detect those defects presented on exterior layers of a building. However, NDT methods cannot provide efficient and reliable information for identifying the defects because of the huge examination areas. Infrared thermography is often applied to quantitative energy performance measurements for building envelopes. Defects on the exterior layer of buildings may be caused by several factors: ventilation losses, conduction losses, thermal bridging, defective services, moisture condensation, moisture ingress, and structure defects. Analyzing the collected thermal images can be quite difficult when the spatial variations of surface temperature are small. In this paper the authors employ image segmentation to cluster those pixels with similar surface temperatures such that the processed thermal images can be composed of limited groups. The surface temperature distribution in each segmented group is homogenous. In doing so, the regional boundaries of the segmented regions can be identified and extracted. A terrestrial laser scanner (TLS) is widely used to collect the point clouds of a building, and those point clouds are applied to reconstruct the 3D model of the building. A mapping model is constructed such that the segmented thermal images can be projected onto the 2D image of the specified 3D building. In this paper, the administrative building in Chaoyang University campus is used as an example. The experimental results not only provide the defect information but also offer their corresponding spatial locations in the 3D model.

Measuring spatial and temporal variation in surface moisture on a coastal beach with a near-infrared terrestrial laser scanner

NASA Astrophysics Data System (ADS)

Smit, Yvonne; Ruessink, Gerben; Brakenhoff, Laura B.; Donker, Jasper J. A.

2018-04-01

Wind-alone predictions of aeolian sand deposition on the most seaward coastal dune ridge often exceed measured deposition substantially. Surface moisture is a major factor limiting aeolian transport on sandy beaches, but existing measurement techniques cannot adequately characterize the spatial and temporal distribution of surface moisture content. Here, we present a new method for detecting surface moisture at high temporal and spatial resolution using a near-infrared terrestrial laser scanner (TLS), the RIEGL VZ-400. Because this TLS operates at a wavelength (1550 nm) near a water absorption band, TLS reflectance is an accurate parameter to measure surface moisture over its full range. Five days of intensive laser scanning were performed on a Dutch beach to illustrate the applicability of the TLS. Gravimetric surface moisture samples were used to calibrate the relation between reflectance and surface moisture. Results reveal a robust negative relation for the full range of possible surface moisture contents (0%-25%), with a correlation-coefficient squared of 0.85 and a root-mean-square error of 2.7%. This relation holds between 20 and 60 m from the TLS. Within this distance the TLS typically produces O (106-107) data points, which we averaged into surface moisture maps with a 1 × 1 m resolution. This grid size largely removes small reflectance disturbances induced by, for example, footprints or tire tracks, while retaining larger scale moisture trends.

The Integration of TLS and Continuous GPS to Study Landslide Deformation: A Case Study at the El Yunque National Forest, Puerto Rico

NASA Astrophysics Data System (ADS)

Phillips, D. A.; Wang, G.; Joyce, J.; Rivera, F. O.; Galan, G.; Meertens, C. M.

2010-12-01

Terrestrial Laser Scanning (TLS) and Global Positioning System (GPS) technologies provide comprehensive information of landslide deformation in the both spatial and temporal domains, which are critical to study the dynamics and kinematics of landslides. TLS allows the generation of a precise 3D model of a landslide surface by deriving spatial deformation from consecutive TLS campaigns. Continuous GPS (CGPS) monitoring allows the generation of the displacement time series of single points. Integrated TLS and CGPS datasets were collected at the base of a 500-600 meter long landslide on a steep mountain slope in the El Yunque National Rainforest in Puerto Rico. Major movements of this landslide in 2004 and 2005 caused the closing of one of three remaining access roads to the national forest. A retaining wall was constructed to restrain the landslide and allow the road reopen. Prior to termination of the wall a significant portion of the northwest end of the wall failed. This portion was repaired but prior to final termination in August 2009 significant soil displacements behind the failed section thwarted final grading efforts. Geologic investigation indicated that the landslide extended much further upslope than indicated and involved bedrock as well as overlying residual soils. Striations along flank escarpments indicated displacement of the entire landslide to the northwest but active displacement could only be certified in the lower most portions behind the retaining wall. The northwest portion of the wall continued to show flexural deformation until it finally burst in July 2010. The size and displacement magnitude of the presently moving mass has become a major focus of investigation. To precisely identify the present boundaries and displacement magnitude of the lower portions of the landslide, we performed two TLS campaigns at the landslide site in May and August 2010. A continuous GPS array consisting of 3 stations was also installed at the site, one of which was located outside of the landslide as a stable reference point. Topcon GB-1000 dual frequency receivers and PG-A1 antennas were used to collect the GPS data. GPS data were processed using Topcon software. A Riegl VZ-400 laser scanner, provided by UNAVCO, was used to collect the TLS data. This scanner provides high resolution, high-speed data acquisition using a narrow infrared laser beam and a fast scanning mechanism. Centimeter-level scans from 12 scan positions were performed during each TLS campaign. TLS data acquisition and global registration were performed using RIEGL RiSCAN-PRO software. The Generic Mapping Tools (GMT, http://gmt.soest.hawaii.edu), a software package widely utilized in the geophysical community, was used for data post processing and map plotting. Our TLS and GPS results have clearly identified the boundaries, the rate and direction of displacement, and the volume change of the lower portions of presently sliding mass. Rainfall data from a local USGS weather station were also integrated to this study. Our results indicate close correlation between landslide movements and rainfall.

Characterising Vegetation Structural and Functional Differences Across Australian Ecosystems From a Network of Terrestrial Laser Scanning Survey Sites and Airborne and Satellite Image Archives

NASA Astrophysics Data System (ADS)

Phinn, S. R.; Armston, J.; Scarth, P.; Johansen, K.; Schaefer, M.; Suarez, L.; Soto-Berelov, M.; Muir, J.; Woodgate, W.; Jones, S.; Held, A. A.

2015-12-01

Vegetation structural information is critical for environmental monitoring, management and compliance assessment. In this context we refer to vegetation structural properties as vertical, horizontal and volumetric dimensions, including: canopy height; amount and distribution of vegetation by height; foliage projective cover (FPC); leaf area index (LAI); and above ground biomass. Our aim was to determine if there were significant differences between vegetation structural properties across 11 ecosystem types in Australia as measured by terrestrial laser scanner (TLS) structure metrics. The ecosystems sampled included: mesophyll vineforest, wet-dry tropical savannah, mallee woodland, subtropical eucalypt forest, mulga woodland/grassland, wet eucalypt forest, dry eucalypt forest, tall and wet eucalypt forest, and desert grassland/shrublands. Canopy height, plant area-height profiles and LAI were calculated from consistently processed TLS data using Australia's Terrestrial Ecosystem Research Network's (TERN) Supersites by the TERN AusCover remote sensing field teams from 2012-2015. The Supersites were sampled using standardised field protocols within a core set of 1 ha plots as part of a 5 km x 5 km uniform area using a RIEGL-VZ400 waveform recording TLS. Four to seven scans were completed per plot, with one centre point and then at 25 m away from the centre point along transect lines at 0o, 60o and 240o. Individual foliage profiles were sensitive to spatial variation in the distribution of plant materials. Significant differences were visible between each of the vegetation communities assessed when aggregated to plot and ecosystem type scales. Several of the communities exhibited simple profiles with either grass and shrubs (e.g. desert grassland) or grass and trees (e.g. mallee woodland). Others had multiple vegetation forms at different heights, contributing to the profile (e.g. wet eucalypt forest). The TLS data provide significantly more detail about the relative vertical and horizontal distribution of plant materials. TLS data are providing a step change in satellite image based vegetation mapping, and refining our knowledge of vegetation structure and its phenological variability. Open access plot scale TLS measurements are available through the TERN Auscover data portal.

Collection, processing and error analysis of Terrestrial Laser Scanning data from fluvial gravel surfaces

NASA Astrophysics Data System (ADS)

Hodge, R.; Brasington, J.; Richards, K.

2009-04-01

The ability to collect 3D elevation data at mm-resolution from in-situ natural surfaces, such as fluvial and coastal sediments, rock surfaces, soils and dunes, is beneficial for a range of geomorphological and geological research. From these data the properties of the surface can be measured, and Digital Terrain Models (DTM) can be constructed. Terrestrial Laser Scanning (TLS) can collect quickly such 3D data with mm-precision and mm-spacing. This paper presents a methodology for the collection and processing of such TLS data, and considers how the errors in this TLS data can be quantified. TLS has been used to collect elevation data from fluvial gravel surfaces. Data were collected from areas of approximately 1 m2, with median grain sizes ranging from 18 to 63 mm. Errors are inherent in such data as a result of the precision of the TLS, and the interaction of factors including laser footprint, surface topography, surface reflectivity and scanning geometry. The methodology for the collection and processing of TLS data from complex surfaces like these fluvial sediments aims to minimise the occurrence of, and remove, such errors. The methodology incorporates taking scans from multiple scanner locations, averaging repeat scans, and applying a series of filters to remove erroneous points. Analysis of 2.5D DTMs interpolated from the processed data has identified geomorphic properties of the gravel surfaces, including the distribution of surface elevations, preferential grain orientation and grain imbrication. However, validation of the data and interpolated DTMs is limited by the availability of techniques capable of collecting independent elevation data of comparable quality. Instead, two alternative approaches to data validation are presented. The first consists of careful internal validation to optimise filter parameter values during data processing combined with a series of laboratory experiments. In the experiments, TLS data were collected from a sphere and planes with different reflectivities to measure the accuracy and precision of TLS data of these geometrically simple objects. Whilst this first approach allows the maximum precision of TLS data from complex surfaces to be estimated, it cannot quantify the distribution of errors within the TLS data and across the interpolated DTMs. The second approach enables this by simulating the collection of TLS data from complex surfaces of a known geometry. This simulated scanning has been verified through systematic comparison with laboratory TLS data. Two types of surface geometry have been investigated: simulated regular arrays of uniform spheres used to analyse the effect of sphere size; and irregular beds of spheres with the same grain size distribution as the fluvial gravels, which provide a comparable complex geometry to the field sediment surfaces. A series of simulated scans of these surfaces has enabled the magnitude and spatial distribution of errors in the interpolated DTMs to be quantified, as well as demonstrating the utility of the different processing stages in removing errors from TLS data. As well as demonstrating the application of simulated scanning as a technique to quantify errors, these results can be used to estimate errors in comparable TLS data.

Terrestrial Laser Scanning Applications in Paleoseismology (Invited)

NASA Astrophysics Data System (ADS)

Arrowsmith, R.; Haddad, D. E.; Akciz, S. O.; Oldow, J. S.; Mauer, J.; Rhodes, D. D.

2009-12-01

Essential information about past earthquakes includes their locations, ages, and magnitudes. Documentation requires high accuracy three-dimensional measurements. We present three examples of recent earthquake geology research using terrestrial laser scanning (TLS): 1) the stratigraphic record and age of earthquakes along the south-central San Andreas Fault at Bidart, 2) geomorphic modification of surface rupture from the 1992 M7.3 Landers, California earthquake, and 3) negative indications of strong ground motion from precariously balanced rocks (PBRs) in an area of relative low seismicity in central Arizona. Sedimentary structures and earthquake-related features exposed in excavations are documented with mosaic photography, a time consuming process. Even carefully prepared mosaics have geometric errors due to edge matching, camera distortion, and non-planar walls. Instead of using photomosaics, we recently scanned the walls of 1-m wide trenches with short range TLS. We projected the resulting point cloud colored by photography acquired by the scanner to vertical planes representing the walls. With only a small overlap between adjacent co-registered scans, the orthophotos have sufficient resolution and superior geometric accuracy compared to the photomosaics. We have monitored the erosional modifications of a prominent ~1-m high fault scarp that formed in the 1992 Landers earthquake. Our repeated observations include photography and topographic survey. In 2008, we scanned the site and co-registered the scans and the prior surveys to document the geometry of the fault scarp. By subtracting the current topography from surface models based on prior surveys, we measured the erosion along the scarp. The largest changes are in the narrow knick channels that cross the scarp at the lower end of 104 m2 drainage basins. The knickpoints are a few 10s of cm wide, ~1 m deep, and a few m long. Separated abruptly from the knickpoint moving upstream, a ~10 m reach of the channel is incised 10-20 cm. PBRs are balanced on bedrock pedestals and formed in upland drainage basins and pediments. They are often used as negative evidence of earthquake-driven ground motions. TLS data provide detailed 3 dimensional geometry of the boulders from which their sensitivity to ground motions can be computed and for which approximate fragility estimation methods can be calibrated. The TLS data also define the surrounding topography and geomorphic context for the PBRs. Those we studied in the Granite Dells near Prescott Arizona are located near hillslope crests ~33 m above the nearest drainage and on hillslope gradients >17°. None were found on gentle slopes adjacent to channels, suggesting that hillslope crests are conducive to developing precarious rocks.

Quantifying, Analysing and Modeling Rockfall Activity in two Different Alpine Catchments using Terrestrial Laserscanning

NASA Astrophysics Data System (ADS)

Haas, F.; Heckmann, T.; Wichmann, V.; Becht, M.

2011-12-01

Rockfall processes play a major role as a natural hazard, especially if the rock faces are located close to infrastructure. However these processes cause also the retreat of the steep rock faces by weathering and the growth of the corresponding talus cones by routing debris down the talus cones. That's why this process plays also an important role for the geomorphic system and the sediment budget of high mountain catchments. The presented investigation deals with the use of TLS for quantification and for analysis of rockfall activity in two study areas located in the Alps. The rockfaces of both catchments and the corresponding talus cones were scanned twice a year from different distances. Figure 1 shows an example for the spatial distribution of surface changes at a rockface in the Northern Dolomites between 2008 and 2010. The measured surface changes at this location yields to a mean rockwall retreat of 0.04 cm/a. But high resolution TLS data are not only applicable to quantify rockfall activity they can also be used to characterize the surface properties of the corresponding talus cones and the runout distances of bigger boulders and this can lead to a better process understanding. Therefore the surface roughness of talus cones in both catchments was characterized from the TLS point clouds by a GIS approach. The resulting detailed maps of the surface conditions on the talus cones were used to improve an existing process model which is able to model runout distances on the talus cones using distributed friction parameters. Beside this the investigations showed, that also the shape of the boulders has an influence on the runout distance. That's why the interrelationships between rock fragment morphology and runout distance of over 600 single boulders were analysed at the site of a large rockfall event. The submitted poster will show the results of the quantification of the rockfall activity and additionally it will show the results of the analyses of the talus cones and of the large rockfall event and applying these results to an existing rockfall model.

Annual low-cost monitoring of a coastal site in Greece by an unmanned aerial vehicle

NASA Astrophysics Data System (ADS)

Hoffmeister, Dirk; Bareth, Georg

2016-04-01

Coastal areas are under permanent change and are also the result of past processes. These processes are for example sediment transport, accumulation and erosion by normal and extreme waves (storms or tsunamis). As about 23% of the World's population lives within a 100 km distance of coasts, knowledge about coastal processes is important, in particular for possible changes in the nearby future. The past devastating tsunami events demonstrated profoundly the high vulnerability of coastal areas. In order to estimate the different effects, coastal monitoring approaches are of interest. Several different methods exist in order to determine changes in the sedimentary budget and coastline configuration. In order to estimate constant annual changes, we have applied terrestrial laser scanning (TLS) in an annual monitoring approach (2009-2011). In 2014, we changed to an approach based on dense imaging and structure-from-motion, applying an unmanned aerial vehicle (UAV) in order to conduct an annual monitoring of a coastal site in western Greece. Therefore, a GoPro Hero 3+ and a Canon PowerShot S110 mounted on a DJI-Phantom 2 were used. All surveys were conducted in a manually structured image acquisition with a huge overlap. Ground control points (GCP) were measured by tachymetric surveying. This successful approach was repeated again in 2015 with the Canon camera. The measurements of 2014 were controlled by an additional TLS survey, which revealed the high accuracy and more suitable coverage for the UAV-based data. Likewise, the large picture datasets were artificially reduced in order to estimate the most efficient number of images for dense point cloud processing. In addition, also the number of GCPs was decreased for one dataset. Overall, high-resolution digital elevation models with a ground resolution of 10 mm and an equal accuracy were achieved with this low-cost equipment. The data reveals the slight changes on this selected site.

On the utilization of novel spectral laser scanning for three-dimensional classification of vegetation elements.

PubMed

Li, Zhan; Schaefer, Michael; Strahler, Alan; Schaaf, Crystal; Jupp, David

2018-04-06

The Dual-Wavelength Echidna Lidar (DWEL), a full waveform terrestrial laser scanner (TLS), has been used to scan a variety of forested and agricultural environments. From these scanning campaigns, we summarize the benefits and challenges given by DWEL's novel coaxial dual-wavelength scanning technology, particularly for the three-dimensional (3D) classification of vegetation elements. Simultaneous scanning at both 1064 nm and 1548 nm by DWEL instruments provides a new spectral dimension to TLS data that joins the 3D spatial dimension of lidar as an information source. Our point cloud classification algorithm explores the utilization of both spectral and spatial attributes of individual points from DWEL scans and highlights the strengths and weaknesses of each attribute domain. The spectral and spatial attributes for vegetation element classification each perform better in different parts of vegetation (canopy interior, fine branches, coarse trunks, etc.) and under different vegetation conditions (dead or live, leaf-on or leaf-off, water content, etc.). These environmental characteristics of vegetation, convolved with the lidar instrument specifications and lidar data quality, result in the actual capabilities of spectral and spatial attributes to classify vegetation elements in 3D space. The spectral and spatial information domains thus complement each other in the classification process. The joint use of both not only enhances the classification accuracy but also reduces its variance across the multiple vegetation types we have examined, highlighting the value of the DWEL as a new source of 3D spectral information. Wider deployment of the DWEL instruments is in practice currently held back by challenges in instrument development and the demands of data processing required by coaxial dual- or multi-wavelength scanning. But the simultaneous 3D acquisition of both spectral and spatial features, offered by new multispectral scanning instruments such as the DWEL, opens doors to study biophysical and biochemical properties of forested and agricultural ecosystems at more detailed scales.

The Kilauea 1974 Flow: Quantitative Morphometry of Lava Flows using Low Altitude Aerial Image Data using a Kite-based Platform in the Field

NASA Astrophysics Data System (ADS)

Scheidt, S. P.; Whelley, P.; Hamilton, C.; Bleacher, J. E.; Garry, W. B.

2015-12-01

The December 31, 1974 lava flow from Kilauea Caldera, Hawaii within the Hawaii Volcanoes National Park was selected for field campaigns as a terrestrial analog for Mars in support of NASA Planetary Geology and Geophysics (PGG) research and the Remote, In Situ and Synchrotron Studies for Science and Exploration (RIS4E) node of the Solar System Exploration Research Virtual Institute (SSERVI) program). The lava flow was a rapidly emplaced unit that was strongly influenced by existing topography, which favored the formation of a tributary lava flow system. The unit includes a diverse range of surface textures (e.g., pāhoehoe, ´áā, and transitional lavas), and structural features (e.g., streamlined islands, pits, and interactions with older tumuli). However, these features are generally below the threshold of visibility within previously acquired airborne and spacecraft data. In this study, we have generated unique, high-resolution digital images using low-altitude Kite Aerial Photography (KAP) system during field campaigns in 2014 and 2015 (National Park Service permit #HAVO-2012-SCI-0025). The kite-based mapping platform (nadir-viewing) and a radio-controlled gimbal (allowing pointing) provided similar data as from an unmanned aerial vehicle (UAV), but with longer flight time, larger total data volumes per sortie, and fewer regulatory challenges and cost. Images acquired from KAP and UAVs are used to create orthomosaics and DEMs using Multi-View Stereo-Photogrammetry (MVSP) software. The 3-Dimensional point clouds are extremely dense, resulting in a grid resolution of < 2 cm. Airborne Light Detection and Ranging (LiDAR) / Terrestrial Laser Scanning (TLS) data have been collected for these areas and provide a basis of comparison or "ground truth" for the photogrammetric data. Our results show a good comparison with LiDAR/TLS data, each offering their own unique advantages and potential for data fusion.

Control Measurements of Crane Rails Performed by Terrestrial Laser Scanning

PubMed Central

Kregar, Klemen; Možina, Jan; Ambrožič, Tomaž; Kogoj, Dušan; Marjetič, Aleš; Štebe, Gašper; Savšek, Simona

2017-01-01

This article presents a method for measuring the geometry of crane rails with terrestrial laser scanning (TLS). Two sets of crane rails were divided into segments, their planes were adjusted, and the characteristic rail lines were defined. We used their profiles to define the positional and altitude deviations of the rails, the span and height difference between the two rails, and we also verified that they complied with the Eurocode 3 standard. We tested the method on crane rails at the hydroelectric power plant in Krško and the thermal power plant in Brestanica. We used two scanning techniques: “pure” TLS (Riegel VZ-400) and “hybrid” TLS (Leica MS50) scanning. This article’s original contribution lies in the detailed presentation of the computations used to define the characteristic lines of the rails without using the numeric procedures from existing software packages. We also analysed the influence of segment length and point density on the rail geometry results, and compared the two laser scanning techniques. We also compared the results obtained by terrestrial laser scanning with the results obtained from the classic polar method, which served as a reference point for its precision. PMID:28726755

Evaluating the Impact of Sea Level Rise and Coastal Flooding on NASA Centers and Facilities by Implementing Terrestrial Laser Scanning Surveys to Improve Coastal Digital Elevation and Inundation Models

NASA Astrophysics Data System (ADS)

Bell, L. J.; Nerem, R. S.; Williams, K.; Meertens, C.; Lestak, L.; Masters, D.

2014-12-01

Sea level is rising in response to climate change. Currently the global mean rate is a little over 3 mm/year, but it is expected to accelerate significantly over this century. This will have a profound impact on coastal populations and infrastructure, including NASA centers and facilities. A detailed study proposed by the University of Colorado's Center for Astrodynamics Research on the impact of sea level rise on several of NASA's most vulnerable facilities was recently funded by NASA. Individual surveys at several high-risk NASA centers were conducted and used as case studies for a broader investigation that needs to be done for coastal infrastructure around the country. The first two years of this study included implementing and conducting a terrestrial laser scanning (TLS) and GPS survey at Kennedy Space Center, Cape Canaveral, Florida, Wallops Flight Facility, Wallops Island, Virginia, Langley Research Center, Hampton, Virginia, and Ames Research Center, Moffett Field, California. We are currently using airborne LiDAR (Light Detection and Ranging) data and TLS (Terrestrial Laser Scanning) data to construct detailed digital elevation models (DEMs) of the facilities that we have assessed. The TLS data acquired at each center provides a very dense point cloud that is being used to improve the detail and accuracy of the digital elevation models currently available. We are also using GPS data we acquired at each center to assess the rate of vertical land movement at the facilities and to tie the DEM to tide gauges and other reference points. With completed, detailed DEMs of the topography and facilities at each center, a series of simple inundation models will then be applied to each area. We will use satellite altimeter data from TOPEX, Jason-1, and Jason-2 to assess the sea level changes observed near these NASA facilities over the last 20 years along with sea level projections from global climate models (GCMs) and semi-empirical projections to make detailed maps of sea level inundation through and up to the years 2050 and 2100 for varying amounts of sea level rise. We will also work with other selected investigators to assess the effects of tidal variations and storm surge when coupled with changes in mean sea level, as storm surge is likely when initial damage due to sea level rise will occur.

Arginine methylation of translocated in liposarcoma (TLS) inhibits its binding to long noncoding RNA, abrogating TLS-mediated repression of CBP/p300 activity.

PubMed

Cui, Wei; Yoneda, Ryoma; Ueda, Naomi; Kurokawa, Riki

2018-05-21

Translocated in liposarcoma (TLS) is an RNA-binding protein and a transcription-regulatory sensor of DNA damage. TLS binds promoter-associated noncoding RNA (pncRNA) and inhibits histone acetyltransferase (HAT) activity of CREB-binding protein (CBP)/E1A-binding protein P300 (p300) on the cyclin D1 (CCND1) gene. Although post-translational modifications of TLS, such as arginine methylation, are known to regulate TLS's nucleocytoplasmic shuttling and assembly in stress granules, its interactions with RNAs remain poorly characterized. Herein, using various biochemical assays, we confirmed the earlier observations that TLS is methylated by protein arginine methyltransferase 1 (PRMT1) in vitro. The arginine methylation of TLS disrupted binding to pncRNA and also prevented binding of TLS to and inhibition of CBP/p300. This result indicated that arginine methylation of TLS abrogates both binding to pncRNA and TLS-mediated inhibition of CBP/p300 HAT activities. We also report that an arginine residue within the Arg-Gly-Gly domain of TLS, Arg-476, serves as the major determinant for binding to pncRNA. Either methylation or mutation of Arg-476 of TLS significantly decreased pncRNA binding and thereby prevented a pncRNA-induced allosteric alteration in TLS that is required for its interaction with CBP/p300. Moreover, unlike wildtype TLS, an R476A TLS mutant did not inhibit CCND1 promoter activity in luciferase reporter assays. Taken together, we propose the hypothesis that arginine methylation of TLS regulates both TLS-nucleic acid and TLS-protein interactions and thereby participates in transcriptional regulation. Published under license by The American Society for Biochemistry and Molecular Biology, Inc.

Ground-based LiDAR application to characterize sea cliff instability processes along a densely populated coastline in Southern Italy

NASA Astrophysics Data System (ADS)

Esposito, Giuseppe; Semaan, Fouad; Salvini, Riccardo; Troise, Claudia; Somma, Renato; Matano, Fabio; Sacchi, Marco

2017-04-01

Sea cliff retreatment along the coastline of the Campi Flegrei volcanic area (Southern Italy) is becoming a threat for public and private structures due to the massive urbanization occurred in the last few decades. In this area, geological features of the outcropping rocks represent one of the most important factors conditioning the sea cliff retreatment. In fact, pyroclastic deposits formed by pumices, scoria, ashes and lapilli are arranged in weakly to moderately welded layers of variable thicknesses, resulting very erodible and prone to landslide processes. Available methods to evaluate topographic changes and retreat rates of sea cliffs include a variety of geomatic techniques, like terrestrial and aerial photogrammetry and LiDAR (Light Detection And Ranging). By means of such techniques, it is in fact possible to obtain high resolution topography of sea cliffs and perform multi-temporal change detection analysis. In this contribution, we present an application of Terrestrial Laser Scanning (TLS or ground-based LiDAR) aimed to identify and quantify instability processes acting along the Torrefumo coastal cliff, in the Campi Flegrei area. Specifically, we acquired a series of 3D point clouds on the years 2013 and 2016, and compared them through a cloud-to-cloud distance computation. Furthermore, a statistical analysis was applied to the change detection results. In this way, an inventory of the cliff failures occurred along the Torrefumo cliff in the 2013-2016 time span was created, as well as the spatial and volumetric distribution of these failures was evaluated. The volumetric analysis shows that large collapses occurred rarely, whereas the spatial analysis shows that the majority of failures occurred in the middle and upper parts of the cliff face. Results also show that both rock fall and surficial erosion processes contribute to the cliff retreatment, acting in turn according to the geological properties of the involved pyroclastic deposits. The presented TLS approach proves to be a cost and time efficient method for characterizing the geomorphic changes involving the sea cliff surfaces over a short-time period (i.e. monthly or yearly). The accuracy of the acquired data allows the characterization of a full range of failures to be located and quantified with a level of detail not reachable using traditional techniques. Results obtained in this research will be used in future applications to assess hazard conditions affecting the anthropic structures built close to the cliff top.

Multi-temporal Terrestrial Laser Scanner monitoring of coastal instability processes at Coroglio cliff

NASA Astrophysics Data System (ADS)

Caputo, Teresa; Somma, Renato; Marino, Ermanno; Matano, Fabio; Troise, Claudia; De Natale, Giuseppe

2016-04-01

The Coroglio cliff is a morphological evolution of the caldera rim of Neapolitan Yellow Tuff (NYT) in Campi Flegrei caldera (CFc) with an elevation of 150 m a.s.l. and a length of about 200 m. The lithology consists of NYT, extremely lithified, overlaid by less lithified recent products of the Phlegrean volcanism., These materials are highly erodible and, due to proximity to the sea, the sea wave and wind actions cause very strong erosion process. In the recent years Terrestrial Laser Scanner (TLS) technique is used for environmental monitoring purposes through the creation of high resolution Digital Surface Model (DSM) and Digital Terrain Model (DTM). This method allows the reconstruction, by means of a dense cloud of points, of a 3D model for the entire investigated area. The scans need to be performed from different points of view in order to ensure a good coverage of the area, because a widespread problem is the occurrence of shaded areas. In our study we used a long-range laser scanner model RIEGL VZ1000®. Numerous surveys (April 2013, June 2014, February 2015) have been performed for monitoring coastal cliff morphological evolution. An additional survey was executed in March 2015, shortly after a landslide occurrence. To validate the multi-temporal monitoring of the laser scanner, a "quick" comparison of the acquired point clouds has been carried out using an algorithm cloud-to-cloud, in order to identify 3D changes. Then 2.5D raster images of the different scans has been performed in GIS environment, also in order to allow a map overlay of the produced thematic layer, both raster and vector data (geology, contour map, orthophoto, and so on). The comparison of multi-temporal data have evidenced interesting geomorphological processes on the cliff. It was observed a very intense (about 6 m) local moving back at the base of the cliff, mainly due to the sea wave action during storms, while in cliff sectors characterized by less compact lithologies widespread small (> 50 cm wide) erosion forms have been recognized. Finally, the upper part of the cliff, characterized by loose pyroclastic deposits covered by vegetation, resulted affected by small collapses, which can involve the public gardens of Virgiliano Park, located at the top of the cliff.

Water storage capacity of the natural river valley - how sedge communities influence it. Case study of Upper Biebrza Basin (Poland) based on ALS and TLS data

NASA Astrophysics Data System (ADS)

Brach, Marcin; Chormański, Jarosław

2014-05-01

The exact determination of water storage capacity in river valley is an important issue for hydrologists, ecologist and flood modellers. In case of natural river valley, the dense and complexity vegetation of the natural ecosystems can influence the proper identification of the water storage. Methods considered to be sufficient in other cases (urbanized, agricultural) may not produce correct results. Sedge communities in natural river valleys form characteristic tussocks, built from the species roots, other organic material and silt or mud. They are formed due to partial flooding during the inundation, so the plants can survive in hard, anaerobic conditions. They can growth even up to 0.5 meters, which is not so visible due to very dense vegetation in the valleys. These tussocks form a microtopography or a river valley. Currently, the most commonly used technology to register the terrain topography is an Airborne Laser Scanning (ALS), but in the case of the tussocks and the dense vegetation it generates high errors on elevation in the areas of the sedges (Carex appropinquata). This study concerns the Upper Biebrza Valley which is located in the northeastern Poland. For purpose of our work we used Terrestrial Laser Scanner (TLS) technology to determine microtopography of selected fields. Before measurements, the green part of the sedge was cut in selected measurements fields. It make possible to register only tussocks shape. Next, step was collection of the airborne ALS data of the valley with density of 8 points/sq m. The experimental field was divided on two sub-fields: one was cut and scanned using TLS before ALS collection, while the second after. Data collected as ALS and the TLS were then compared. The accuracy of the ALS data depends on the land cover of an area, while TLS accuracy is around 2 millimeters (when georeferenced it depends on the accuracy of reference points - in our case it was made using GPS RTK which gave us accuracy of few centimeters). The analysis shown that differences between ALS measurements and TLS on leaf free area is on average of 5 centimeters, while on areas which were not mowed it grows up to 0,5 m. Thanks to this studies we were able to determine water storage possibilities of valley while considering the tussocks shape.

Terrestrial Laser Scanner for assessing rockfall susceptibility in the Cilento rocky coast (Southern Italy)

NASA Astrophysics Data System (ADS)

Sorrentino, Valerio; Matasci, Battista; Abellan, Antonio; Jaboyedoff, Michel; Marino, Ermanno; Pignalosa, Antonio; Santo, Antonio

2016-04-01

Rockfalls and other types of landslides are the dominant processes causing a retreat of sea cliffs. The coastal areas constitute an important tourist attraction and a large number of people rest beneath the cliffs on a daily basis, considerably increasing the risk associated to rockfalls. We present an approach to assess rockfall susceptibility at the cliff scale based on terrestrial laser scanner (TLS) point clouds. The test area is a coastal cliff situated in the southern part of the Cilento (Centola Municipality, Campania Region), in which a natural arch was formed. This cliff is constituted by heavy fractured carbonate rock mass with a strong structural control. In June 2015 TLS data were acquired with long-range scanner RIEGL VZ1000®. The structural analysis of the cliff was performed in the field and using Coltop 3D software on the point cloud. As a result, 10 discontinuity sets (joint, faults and bedding planes) were individuated and the different characteristics such as orientation, spacing and persistence were measured. The kinematically unstable areas were highlighted using a script that computes an index of susceptibility to rockfalls based on the spatial distribution of failure mechanisms. The susceptibility index computation is based on the average surface that every joint set (or combinations of two joint sets in the case of wedge failure) forms on the topography according to its spacing, trace length, and incidence angle. This susceptibility index also depends on the steepness of the joint set (or of the intersection line in the case of wedge failure). As a result the most important discontinuity sets in terms of potential planar failure, wedge failure and toppling were individuated and an assessment of rockfall susceptibility at the cliff scale was achieved. Results show that the kinematically feasible failures are not equally distributed along the cliff but concentrated on certain areas. The most susceptible areas for planar failure are related to the discontinuity set K10 (71/097), whereas for toppling the highest susceptibility is reached with K1 (60/218). Concerning wedge failure, the combination of K10 and K1 yields the highest susceptibility values. It shows also clustering with higher density which is probably related to regional structures. More detailed investigations of the rockfall susceptibility and failure mechanisms will be performed during the forthcoming months. The relationship with regional structures will be also investigated in more detail. Perspectives also include using the methodology on the other side of the natural arch in order to provide a global susceptibility assessment of the area.

An efficient temporal logic for robotic task planning

NASA Technical Reports Server (NTRS)

Becker, Jeffrey M.

1989-01-01

Computations required for temporal reasoning can be prohibitively expensive if fully general representations are used. Overly simple representations, such as totally ordered sequence of time points, are inadequate for use in a nonlinear task planning system. A middle ground is identified which is general enough to support a capable nonlinear task planner, but specialized enough that the system can support online task planning in real time. A Temporal Logic System (TLS) was developed during the Intelligent Task Automation (ITA) project to support robotic task planning. TLS is also used within the ITA system to support plan execution, monitoring, and exception handling.

Recent advances in analysis and prediction of Rock Falls, Rock Slides, and Rock Avalanches using 3D point clouds

NASA Astrophysics Data System (ADS)

Abellan, A.; Carrea, D.; Jaboyedoff, M.; Riquelme, A.; Tomas, R.; Royan, M. J.; Vilaplana, J. M.; Gauvin, N.

2014-12-01

The acquisition of dense terrain information using well-established 3D techniques (e.g. LiDAR, photogrammetry) and the use of new mobile platforms (e.g. Unmanned Aerial Vehicles) together with the increasingly efficient post-processing workflows for image treatment (e.g. Structure From Motion) are opening up new possibilities for analysing, modeling and predicting rock slope failures. Examples of applications at different scales ranging from the monitoring of small changes at unprecedented level of detail (e.g. sub millimeter-scale deformation under lab-scale conditions) to the detection of slope deformation at regional scale. In this communication we will show the main accomplishments of the Swiss National Foundation project "Characterizing and analysing 3D temporal slope evolution" carried out at Risk Analysis group (Univ. of Lausanne) in close collaboration with the RISKNAT and INTERES groups (Univ. of Barcelona and Univ. of Alicante, respectively). We have recently developed a series of innovative approaches for rock slope analysis using 3D point clouds, some examples include: the development of semi-automatic methodologies for the identification and extraction of rock-slope features such as discontinuities, type of material, rockfalls occurrence and deformation. Moreover, we have been improving our knowledge in progressive rupture characterization thanks to several algorithms, some examples include the computing of 3D deformation, the use of filtering techniques on permanently based TLS, the use of rock slope failure analogies at different scales (laboratory simulations, monitoring at glacier's front, etc.), the modelling of the influence of external forces such as precipitation on the acceleration of the deformation rate, etc. We have also been interested on the analysis of rock slope deformation prior to the occurrence of fragmental rockfalls and the interaction of this deformation with the spatial location of future events. In spite of these recent advances, a great challenge still remains in the development of new algorithms for more accurate techniques for 3D point cloud treatment (e.g. filtering, segmentation, etc.) aiming to improve rock slope characterization and monitoring, a series of exciting research findings are expected in the forthcoming years.

Quantitative geometric description of fracture systems in an andesite lava flow using terrestrial laser scanner data

NASA Astrophysics Data System (ADS)

Massiot, Cécile; Nicol, Andrew; Townend, John; McNamara, David D.; Garcia-Sellés, David; Conway, Chris E.; Archibald, Garth

2017-07-01

Permeability hosted in andesitic lava flows is dominantly controlled by fracture systems, with geometries that are often poorly constrained. This paper explores the fracture system geometry of an andesitic lava flow formed during its emplacement and cooling over gentle paleo-topography, on the active Ruapehu volcano, New Zealand. The fracture system comprises column-forming and platy fractures within the blocky interior of the lava flow, bounded by autobreccias partially observed at the base and top of the outcrop. We use a terrestrial laser scanner (TLS) dataset to extract column-forming fractures directly from the point-cloud shape over an outcrop area of ∼3090 m2. Fracture processing is validated using manual scanlines and high-resolution panoramic photographs. Column-forming fractures are either steeply or gently dipping with no preferred strike orientation. Geometric analysis of fractures derived from the TLS, in combination with virtual scanlines and trace maps, reveals that: (1) steeply dipping column-forming fracture lengths follow a scale-dependent exponential or log-normal distribution rather than a scale-independent power-law; (2) fracture intensities (combining density and size) vary throughout the blocky zone but have similar mean values up and along the lava flow; and (3) the areal fracture intensity is higher in the autobreccia than in the blocky zone. The inter-connected fracture network has a connected porosity of ∼0.5 % that promote fluid flow vertically and laterally within the blocky zone, and is partially connected to the autobreccias. Autobreccias may act either as lateral permeability connections or barriers in reservoirs, depending on burial and alteration history. A discrete fracture network model generated from these geometrical parameters yields a highly connected fracture network, consistent with outcrop observations.

Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning

USGS Publications Warehouse

Anderson, Kyle E.; Glenn, Nancy F.; Spaete, Lucas P.; Shinneman, Douglas; Pilliod, David S.; Arkle, Robert; McIlroy, Susan; Derryberry, DeWayne R.

2018-01-01

Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature vegetation across large plots. We collected high-definition TLS scans of 26 1-ha plots in desert grasslands and big sagebrush shrublands in southwest Idaho, USA. We used the Random Forests machine learning algorithm to develop decision tree models predicting the biomass and canopy cover of several vegetation classes from statistical descriptors of the aboveground heights of TLS points. Manual measurements of vegetation characteristics collected within each plot served as training and validation data. Models based on five or fewer TLS descriptors of vegetation heights were developed to predict the canopy cover fraction of shrubs (R2 = 0.77, RMSE = 7%), annual grasses (R2 = 0.70, RMSE = 21%), perennial grasses (R2 = 0.36, RMSE = 12%), forbs (R2 = 0.52, RMSE = 6%), bare earth or litter (R2 = 0.49, RMSE = 19%), and the biomass of shrubs (R2 = 0.71, RMSE = 175 g) and herbaceous vegetation (R2 = 0.61, RMSE = 99 g) (all values reported are out-of-bag). Our models explained much of the variability between predictions and manual measurements, and yet we expect that future applications could produce even better results by reducing some of the methodological sources of error that we encountered. Our work demonstrates how TLS can be used efficiently to extend manual measurement of vegetation characteristics from small to large plots in grasslands and shrublands, with potential application to other similarly structured ecosystems. Our method shows that vegetation structural characteristics can be modeled without classifying and delineating individual plants, a challenging and time-consuming step common in previous methods applying TLS to vegetation inventory. Improving application of TLS to studies of shrub-steppe ecosystems will serve immediate management needs by enhancing vegetation inventories, environmental modeling studies, and the ability to train broader datasets collected from air and space.

FUS/TLS acts as an aggregation-dependent modifier of polyglutamine disease model mice.

PubMed

Kino, Yoshihiro; Washizu, Chika; Kurosawa, Masaru; Yamada, Mizuki; Doi, Hiroshi; Takumi, Toru; Adachi, Hiroaki; Katsuno, Masahisa; Sobue, Gen; Hicks, Geoffrey G; Hattori, Nobutaka; Shimogori, Tomomi; Nukina, Nobuyuki

2016-10-14

FUS/TLS is an RNA/DNA-binding protein associated with neurodegenerative diseases including amyotrophic lateral sclerosis and frontotemporal lobar degeneration. Previously, we found that a prion-like domain in the N-terminus of FUS/TLS mediates co-aggregation between FUS/TLS and mutant huntingtin, the gene product of Huntington's disease (HD). Here, we show that heterozygous knockout of FUS/TLS worsened the phenotypes of model mice of (HD, but not spinal and bulbar muscular atrophy (SBMA). This difference was correlated with the degree of pathological association between disease proteins and FUS/TLS. Co-aggregation between FUS/TLS and mutant huntingtin resulted in the depletion of free FUS/TLS protein in HD mice that was detected as a monomer in SDS-PAGE analysis. Recently, we found that FUS/TLS paralogs, TAF15 and EWS, were up-regulated in homozygous FUS/TLS knockout mice. These two proteins were up-regulated in both HD and FUS/TLS heterozygote mice, and were further elevated in HD-TLS +/- double mutant mice, consistent with the functional impairment of FUS/TLS. These results suggest that FUS/TLS sequestration by co-aggregation is a rate-limiting factor of disease phenotypes of HD and that inclusions may have an adverse aspect, rather than being simply benign or protective. In addition, our results highlight inclusions as repositories of potential modifiers of neurodegeneration.

Fracture analysis of an Eocene reservoir in Eastern Tunisia by coupling Terrestrial Laser Scanning with GigaPan Technology and seismic attribute

NASA Astrophysics Data System (ADS)

Mastouri, Raja; Guerin, Antoine; Marchant, Robin; Derron, Marc-Henri; Boulares, Achref; Lazzez, Marzouk; Marillier, François; Jaboyedoff, Michel; Bouaziz, Samir

2015-04-01

It is usually not possible to study in situ fractures and faults of oil reservoirs. Then outcropping reservoir analogues are used instead. For this purpose, Terrestrial Laser Scanning (TLS) has been increasingly used for some years in the petroleum sector. The formations El Garia and Reineche make the Eocene oil reservoir of Eastern Tunisia. The fracturing of these formations has been analyzed on the surface by TLS on a reservoir analogue outcrop and in the depth by 3D seismic data. TLS datasets provide clear information on fracture geometry distribution (spacing and persistence), connectivity and joint orientation. These results were then compared to structures observed in depth with seismic data. The reservoir analogues are the Ousselat cliff (formation El Garia) and the Damous quarry (formation Reineche). Those two sites are made of marine limestone rich in large foraminifers, gastropods and nummulites. Fieldwork, TLS acquisitions and high-resolution GigaPan panoramas were put together to create digital outcrop models. A total of 9 scans at 3 different survey positions were carried out. Firstly, the data processing (cleaning, alignment and georeferencing of the raw point clouds) was carried out using the Polyworks software. Secondly, we draped Gigapixel pictures on the triangular mesh generated with 3DReshaper to produce relief shading. This process produces a photorealistic model that gives a 3D representation of the outcrop. Finally, Coltop3D was used to identify the different sets of discontinuities and to measure their orientations. Furthermore, we used some 3D seismic attribute data to interpret approximately 60 fractures and faults at the top of the Eocene reservoir. The Coltop3D analysis of the Ousselat cliff shows 5 sets of joints and fractures, with different dips and dip directions. They all strike in directions NW-SE, NNE-SSW, NE-SW and ENE-WSW. Using the photorealistic model, we measured approximately 120 fracture spacings ranging from 1.75m to 10m. For Reineche formation outcrop, the structural analog indicates 8 sets of joints and fractures. In Total, we measured 150 fracture spacings. The most part of fracture spacings range from 0.05m to 1m. The results show that many joints of the quarry rocks are interconnected with other small-scale fractures. The comparison between the stereonets obtained by Coltop3D and the seismic attributes indicated that fractures striking NW-SE to NNW-SSE and NE-SW to NNE-SSW are represented in all surveys position. The majority of the faults and fractures observed in TLS data and 3D seismic data can be explained by a combination of extension and shear. Moreover, in this study, we found that there is no correlation between fractures density or fracture distribution and lithology. Finally, the density and the geometry of the fractures have been also interpreted at the outcrop level and in depth, this comparison allows to better characterize the relationship between permeability, secondary porosity and fracture density of the Eocene reservoir.

Geo-Mechanical Characterization of Carbonate Rock Masses by Means of Laser Scanner Technique

NASA Astrophysics Data System (ADS)

Palma, Biagio; Parise, Mario; Ruocco, Anna

2017-12-01

Knowledge of the geometrical and structural setting of rock masses is crucial to evaluate the stability and to design the most suitable stabilization works. In this work we use the Terrestrial Laser Scanning (TLS) at the site of the Grave of the Castellana Caves, a famous show cave in southern Italy. The Grave is the natural access to the cave system, produced by collapse of the vault, due to upward progression of instabilities in the carbonate rock masses. It is about 55-m high, bell-shaped, with maximum width of 120 m. Aim of the work is the characterization of carbonate rock masses from the structural and geo-mechanical standpoints through the use of innovative survey techniques. TLS survey provides a product consisting of millions of geo-referenced points, to be managed in space, to become a suitable database for the morphological and geological-structural analysis. Studying by means of TLS a rock face, partly inaccessible or located in very complex environments, allows to investigate slopes in their overall areal extent, thus offering advantages both as regards safety of the workers and time needed for the survey. In addition to TLS, the traditional approach was also followed by performing scanlines surveys along the rims of the Grave, following the ISRM recommendations for characterization of discontinuity in rock masses. A quantitative comparison among the data obtained by TLS technique and those deriving from the classical geo-mechanical survey is eventually presented, to discuss potentiality of drawbacks of the different techniques used for surveying the rock masses.

Modeling water and heat balance components of large territory for vegetation season using information from polar-orbital and geostationary meteorological satellites

NASA Astrophysics Data System (ADS)

Muzylev, Eugene; Startseva, Zoya; Uspensky, Alexander; Volkova, Elena; Kukharsky, Alexander; Uspensky, Sergey

2015-04-01

To date, physical-mathematical modeling processes of land surface-atmosphere interaction is considered to be the most appropriate tool for obtaining reliable estimates of water and heat balance components of large territories. The model of these processes (Land Surface Model, LSM) developed for vegetation period is destined for simulating soil water content W, evapotranspiration Ev, vertical latent LE and heat fluxes from land surface as well as vertically distributed soil temperature and moisture, soil surface Tg and foliage Tf temperatures, and land surface skin temperature (LST) Ts. The model is suitable for utilizing remote sensing data on land surface and meteorological conditions. In the study these data have been obtained from measurements by scanning radiometers AVHRR/NOAA, MODIS/EOS Terra and Aqua, SEVIRI/geostationary satellites Meteosat-9, -10 (MSG-2, -3). The heterogeneity of the land surface and meteorological conditions has been taken into account in the model by using soil and vegetation characteristics as parameters and meteorological characteristics as input variables. Values of these characteristics have been determined from ground observations and remote sensing information. So, AVHRR data have been used to build the estimates of effective land surface temperature (LST) Ts.eff and emissivity E, vegetation-air temperature (temperature at the vegetation level) Ta, normalized vegetation index NDVI, vegetation cover fraction B, the leaf area index LAI, and precipitation. From MODIS data the values of LST Tls, Å, NDVI, LAI have been derived. From SEVIRI data there have been retrieved Tls, E, Ta, NDVI, LAI and precipitation. All named retrievals covered the vast territory of the part of the agricultural Central Black Earth Region located in the steppe-forest zone of European Russia. This territory with coordinates 49°30'-54°N, 31°-43°E and a total area of 227,300 km2 has been chosen for investigation. It has been carried out for years 2009-2013 vegetation seasons. To provide the retrieval of Ts.eff, E, Ta, NDVI, B, and LAI the previously developed technologies of AVHRR data processing have been refined and adapted to the region of interest. The updated linear regression estimators for Ts.eff and Tà have been built using representative training samples compiled for above vegetation seasons. The updated software package has been applied for AVHRR data processing to generate estimates of named values. To verify the accuracy of these estimates the error statistics of Ts.eff and Ta derivation has been investigated for various days of named seasons using comparison with in-situ ground-based measurements. On the base of special technology and Internet resources the remote sensing products Tls, E, NDVI, LAI derived from MODIS data and covering the study area have been extracted from LP DAAC web-site for the same vegetation seasons. The reliability of the MODIS-derived Tls estimates has been confirmed via comparison with analogous and collocated ground-, AVHRR-, and SEVIRI-based ones. The prepared remote sensing dataset has also included the SEVIRI-derived estimates of Tls, E, NDVI, Ta at daylight and night-time and daily estimates of LAI. The Tls estimates has been built utilizing the method and technology developed for the retrieval of Tls and E from 15 minutes time interval SEVIRI data in IR channels 10.8 and 12.0 µm (classified as 100% cloud-free and covering the area of interest) at three successive times without accurate a priori knowledge of E. Comparison of the SEVIRI-based Tls retrievals with independent collocated Tls estimates generated at the Land Surface Analysis Satellite Applications Facility (LSA SAF, Lisbon, Portugal) has given daily- or monthly-averaged values of RMS deviation in the range of 2°C for various dates and months during the mentioned vegetation seasons which is quite acceptable result. The reliability of the SEVIRI-based Tls estimates for the study area has been also confirmed by comparing with AVHRR- and MODIS-derived LST estimates for the same seasons. The SEVIRI-derived values of Ta considered as the temperature of the vegetation cover has been obtained using Tls estimates and a previously found multiple linear regression relationship between Tls and Ta formulated accounting for solar zenith angle and land elevation. A comparison with ground-based collocated Ta observations has given RMS errors of 2.5°C and lower. It can be treated as a proof of the proposed technique's functionality. SEVIRI-derived LAI estimates have been retrieved at LSA SAF from measurements by this sensor in channels 0.6, 0.8, and 1.6 μm under cloud-free conditions at that when using data in the channel 1.6 μm the accuracy of these estimates has increased. In the study the AVHRR- and SEVIRI-derived estimates of daily and monthly precipitation sums for the territory under investigation for the years 2009 - 2013 vegetation seasons have been also used. These estimates have been obtained by the improved integrated Multi Threshold Method (MTM) providing detection and identification of cloud types around the clock throughout the year as well as identification of precipitation zones and determination of instantaneous precipitation maximum intensity within the pixel using the measurement data in different channels of named sensors as predictors. Validation of the MTM has been performed by comparing the daily and monthly precipitation sums with appropriate values resulted from ground-based observations at the meteorological stations of the region. The probability of detecting precipitation zones from satellite data corresponding to the actual ones has been amounted to 70-80%. AVHRR- and SEVIRI-derived daily and monthly precipitation sums have been in reasonable agreement with each other and with results of ground-based observations although they are smoother than the last values. Discrepancies have been noted only for local maxima for which satellite-based estimates of precipitation have been much less than ground-based ones. It may be due to the different spatial scales of areal satellite-derived and point ground-based estimates. To utilize satellite-derived vegetation and meteorological characteristics in the model the special procedures have been developed including: - replacement of ground-based LAI and B estimates used as model parameters by their satellite-derived estimates from AVHRR, MODIS and SEVIRI data. Correctness of such replacement has been confirmed by comparing the time behavior of LAI over the period of vegetation as well as modeled and measured values of evapotranspiration Ev and soil moisture content W; - entering AVHRR-, MODIS- and SEVIRI-derived estimates of Ts.eff Tls, and Ta into the model as input variables instead of ground-measured values with verification of adequacy of model operation under such a change through comparison of the calculated and measured values of W and Ev; - inputing satellite-derived estimates of precipitation during vegetation period retrieved from AVHRR and SEVIRI data using the MTM into the model as input variables. When developing given procedure algorithms and programs have been created to transit from assessment of the rainfall intensity to evaluation of its daily values. The implementation of such a transition requires controlling correctness of the estimates built at each time step. This control includes comparison of areal distributions of three-hour, daily and monthly precipitation amounts obtained from satellite data and calculated by interpolation of standard network observation data; - taking into account spatial heterogeneity of fields of satellite AVHRR-, MODIS- and SEVIRI-derived estimates of LAI, B, LST and precipitation. This has involved the development of algorithms and software for entering the values of all named characteristics into the model in each computational grid node. Values of evapotranspiration E, soil water content W, vertical latent and sensible heat fluxes and other water and heat balance components as well as land surface temperature and moisture area-distributed over the territory of interest have been resulted from the model calculations for the years 2009-2013 vegetation seasons. These calculations have been carried out utilizing satellite-derived estimates of the vegetation characteristics, LST and precipitation. E and W calculation errors have not exceeded the standard values.

Measuring the spatial variation in surface moisture on a coastal beach with an infra-red terrestrial laser scanner

NASA Astrophysics Data System (ADS)

Smit, Yvonne; Donker, Jasper; Ruessink, Gerben

2016-04-01

Coastal sand dunes provide essential protection against marine flooding. Consequently, dune erosion during severe storms has been studied intensively, resulting in well-developed erosion models for use in scientific and applied projects. Nowadays there is growing awareness that similarly advanced knowledge on dune recovery and growth is needed to predict future dune development. For this reason, aeolian sand transport from the beach into the dunes has to be investigated thoroughly. Surface moisture is a major factor limiting aeolian transport on sandy beaches. By increasing the velocity threshold for sediment entrainment, pick-up rates reduce and the fetch length increases. Conventional measurement techniques cannot adequately characterize the spatial and temporal distribution of surface moisture content required to study the effects on aeolian transport. Here we present a new method for detecting surface moisture at high temporal and spatial resolution using the RIEGL VZ-400 terrestrial laser scanner (TLS). Because this TLS operates at a wavelength near a water absorption band (1550 nm), TLS reflectance is an accurate parameter to measure surface soil moisture over its full range. Three days of intensive laser scanning were performed on a Dutch beach to illustrate the applicability of the TLS. Gravimetric soil moisture samples were used to calibrate the relation between reflectance and surface moisture. Results reveal a robust negative relation for the full range of possible surface moisture contents (0% - 25%). This relation holds to about 80 m from the TLS. Within this distance the TLS typically produces O(106-107) data points, which we averaged into soil moisture maps with a 0.25x0.25 m resolution. This grid size largely removes small moisture disturbances induced by, for example, footprints or tire tracks, while retaining larger scale trends. As the next step in our research, we will analyze the obtained maps to determine which processes affect the spatial and temporal surface-moisture variability.

The efficacy of febuxostat 10 mg for the prevention of hyperuricemia associated with tumor lysis syndrome (TLS) in Japanese patients with non-Hodgkin's lymphoma
.

PubMed

Yasu, Takeo; Kobayashi, Shunsuke; Horii, Mai; Kurokawa, Yosuke

2016-12-01

Tumor lysis syndrome (TLS) is a life-threatening oncologic emergency. The control of serum uric acid level (UA) is important for prevention of TLS. Febuxostat has demonstrated its superiority over allopurinol in decreasing UA level. We retrospectively evaluated the efficacy of febuxostat 10 mg in prevention of hyperuricemia associated with TLS (HU-TLS) in 12 patients with non-Hodgkin's lymphoma (NHL). Mean UA levels were found to significantly decrease (p = 0.003). HU-TLS was prevented in all patients. Thus, febuxostat 10 mg is effective in prevention of HU-TLS. Future study is need to determine whether the incidence of HU-TLS change with dosage of febuxostat.
.

[Clinical feature of ALS with communication disturbance; the possibility to communicate in TLS].

PubMed

Nagao, Masahiro

2013-01-01

In the subsets of amyotrohic lateral sclerosis (ALS), totally-locked in state (TLS) is shown as the result of marked progression of motor neuron degeneration. In TLS, patients are impossible to move any voluntary muscles. As the result, patients with TLS cannot communicate with any augmentative and alternative communication devices(AACD) at present. To find the AACD that enables for TLS to communicate, we examined the clinical character, brain MRI, SPECT and evoked potentials in TLS. Brain MRI showed marked brain atrophy including the brainstem, but the occipital lobe was spared. SPECT and visual evoked potentials (VEP) showed preserved physiological function of the occipital lobe in TLS. The results suggest that neuronal degeneration in TLS is not restricted to motor system, but that the visual pathways are spared. Patients with TLS may be possible to use AACD that utilize the visual pathway.

Fusion of 3D models derived from TLS and image-based techniques for CH enhanced documentation

NASA Astrophysics Data System (ADS)

Bastonero, P.; Donadio, E.; Chiabrando, F.; Spanò, A.

2014-05-01

Recognizing the various advantages offered by 3D new metric survey technologies in the Cultural Heritage documentation phase, this paper presents some tests of 3D model generation, using different methods, and their possible fusion. With the aim to define potentialities and problems deriving from integration or fusion of metric data acquired with different survey techniques, the elected test case is an outstanding Cultural Heritage item, presenting both widespread and specific complexities connected to the conservation of historical buildings. The site is the Staffarda Abbey, the most relevant evidence of medieval architecture in Piedmont. This application faced one of the most topical architectural issues consisting in the opportunity to study and analyze an object as a whole, from twice location of acquisition sensors, both the terrestrial and the aerial one. In particular, the work consists in the evaluation of chances deriving from a simple union or from the fusion of different 3D cloudmodels of the abbey, achieved by multi-sensor techniques. The aerial survey is based on a photogrammetric RPAS (Remotely piloted aircraft system) flight while the terrestrial acquisition have been fulfilled by laser scanning survey. Both techniques allowed to extract and process different point clouds and to generate consequent 3D continuous models which are characterized by different scale, that is to say different resolutions and diverse contents of details and precisions. Starting from these models, the proposed process, applied to a sample area of the building, aimed to test the generation of a unique 3Dmodel thorough a fusion of different sensor point clouds. Surely, the describing potential and the metric and thematic gains feasible by the final model exceeded those offered by the two detached models.

The analysis of selected orientation methods of architectural objects' scans

NASA Astrophysics Data System (ADS)

Markiewicz, Jakub S.; Kajdewicz, Irmina; Zawieska, Dorota

2015-05-01

The terrestrial laser scanning is commonly used in different areas, inter alia in modelling architectural objects. One of the most important part of TLS data processing is scans registration. It significantly affects the accuracy of generation of high resolution photogrammetric documentation. This process is time consuming, especially in case of a large number of scans. It is mostly based on an automatic detection and a semi-automatic measurement of control points placed on the object. In case of the complicated historical buildings, sometimes it is forbidden to place survey targets on an object or it may be difficult to distribute survey targets in the optimal way. Such problems encourage the search for the new methods of scan registration which enable to eliminate the step of placing survey targets on the object. In this paper the results of target-based registration method are presented The survey targets placed on the walls of historical chambers of the Museum of King Jan III's Palace at Wilanów and on the walls of ruins of the Bishops Castle in Iłża were used for scan orientation. Several variants of orientation were performed, taking into account different placement and different number of survey marks. Afterwards, during next research works, raster images were generated from scans and the SIFT and SURF algorithms for image processing were used to automatically search for corresponding natural points. The case of utilisation of automatically identified points for TLS data orientation was analysed. The results of both methods for TLS data registration were summarized and presented in numerical and graphical forms.

FUS/TLS-immunoreactive neuronal and glial cell inclusions increase with disease duration in familial amyotrophic lateral sclerosis with an R521C FUS/TLS mutation.

PubMed

Suzuki, Naoki; Kato, Shinsuke; Kato, Masako; Warita, Hitoshi; Mizuno, Hideki; Kato, Masaaki; Shimakura, Naoko; Akiyama, Haruhiko; Kobayashi, Zen; Konno, Hidehiko; Aoki, Masashi

2012-09-01

Basophilic inclusions (BIs) are pathological features of a subset of frontotemporal lobar degeneration disorders, including sporadic amyotrophic lateral sclerosis (ALS) and familial ALS (FALS). Mutations in the fused in sarcoma/translocated in liposarcoma (FUS/TLS) gene have recently been identified as a cause of FALS. The FUS/TLS-immunoreactive inclusions are consistently found in cases of frontotemporal lobar degeneration with BIs; however, the association between ALS cases with BIs and FUS/TLS accumulation is not well understood. We used immunohistochemistry to analyze 3 autopsy cases of FALS with the FUS/TLS mutation and with BIs using anti-FUS/TLS antibodies. The disease durations were 1, 3, and 9 years. As the disease duration becomes longer, there were broader distributions of neuronal and glial FUS/TLS-immunoreactive inclusions. As early as 1 year after the onset, BIs, neuronal cytoplasmic inclusions and glial cytoplasmic inclusions were found in the substantia nigra in addition to the anterior horn of the spinal cord. Glial cytoplasmic inclusions are found earlier and in a wider distribution than neuronal cytoplasmic inclusions. The distribution of FUS/TLS-immunoreactive inclusions in FUS/TLS-mutated FALS with BIs was broader than that of BIs alone, suggesting that the pathogenetic mechanism may have originated from the FUS/TLS proteinopathy.

Combined application of airborne and terrestrial laserscanning for quantifying sediment relocation by a large debris flow event

NASA Astrophysics Data System (ADS)

Bremer, Magnus; Sass, Oliver; Vetter, Michael; Geilhausen, Martin

2010-05-01

Country-wide ALS datasets of high resolution become more and more available and can provide a solid basis for geomorphological research. On the other hand, terrain changes after geomorphological extreme events can be quickly and flexibly documented by TLS and be compared to the pre-existing ALS datasets. For quantifying net-erosion, net-sedimentation and transport rates of events like rock falls, landslides and debris flows, comparing TLS surveys after the event to ALS data before the event is likely to become a widespread and powerful tool. However, the accuracy and possible errors of fitting ALS and TLS data have to be carefully assessed. We tried to quantify sediment movement and terrain changes caused by a major debris-flow-event in the Halltal in the Karwendel Mountains (Tyrol, Austria). Wide areas of limestone debris were dissected and relocated in the course of an exceptional rainstorm event on 29th June 2008. The event occurred 64 years after wildfire-driven deforestation. In the area, dense dwarf pine (pinus mugo) shrub cover is widespread, causing specific problems in generating terrain models. We compared a pre-event ALS-dataset, provided by the federal-state of Tyrol, and a post-event TLS survey. The two scanner systems have differing system characteristics (scan angles, resolutions, application of dGPS, etc.), causing different systematic and random errors. Combining TLS and ALS point data was achieved using an algorithm of the RISCAN_PRO software (Multi Station Adjustment), enabling a least square fitting between the two surfaces. Adjustment and registration accuracies as well as the quality of applied vegetation filters, mainly eliminating non-groundpoints from the raw data, are crucial for the generation of high-quality terrain models and a reliable comparison of the two data sets. Readily available filter algorithms provide good performance for gently sloped terrain and high forest vegetation. However, the low krummholz vegetation on steep terrain proved difficult to be filtered. This is due to a small height difference between terrain and canopy, a very strong height variation of the terrain points compared to the height variation of the canopy points and a very high density of the vegetation. The letter leads to very low percentages of groundpoints (1 - 5%). A combined filtering approach using a surface-based filter and a morphological filter, adapted to the characteristics of the krummholz vegetation were applied to overcome these problems. In the next step, the datasets were compared, erosion- and sedimentation areas were detected and quantified (cut-and-fill) in view of the accuracy achieved. The position of the relocated surface areas were compared to the morphological structures of the initial surface (inclination, curvature, flowpaths, hydrological catchments). Considerable deviations between the datasets were caused, besides the geomorphic terrain changes, by systematic and random errors. Due to the scanner perspective, parts of the steep slopes are depicted inaccurately by ALS. Rugged terrain surfaces cause random errors of ALS/TLS adjustment when the ratio of point density to surface variability is low. Due to multiple returns and alteration of pulse shape, terrain altitude is frequently overestimated when dense shrub cover is present. This effect becomes stronger with larger footprints. Despite these problems, erosional and depositional areas of debris flows could be clearly identified and match the results of field surveys. Strongest erosion occurred along the flowpaths with the greatest runoff concentration, mainly at the bedrock-debris interface.

Validation of snow depth reconstruction from lapse-rate webcam images against terrestrial laser scanner measurements in centrel Pyrenees

NASA Astrophysics Data System (ADS)

Revuelto, Jesús; Jonas, Tobias; López-Moreno, Juan Ignacio

2015-04-01

Snow distribution in mountain areas plays a key role in many processes as runoff dynamics, ecological cycles or erosion rates. Nevertheless, the acquisition of high resolution snow depth data (SD) in space-time is a complex task that needs the application of remote sensing techniques as Terrestrial Laser Scanning (TLS). Such kind of techniques requires intense field work for obtaining high quality snowpack evolution during a specific time period. Combining TLS data with other remote sensing techniques (satellite images, photogrammetry…) and in-situ measurements could represent an improvement of the available information of a variable with rapid topographic changes. The aim of this study is to reconstruct daily SD distribution from lapse-rate images from a webcam and data from two to three TLS acquisitions during the snow melting periods of 2012, 2013 and 2014. This information is obtained at Izas Experimental catchment in Central Spanish Pyrenees; a catchment of 33ha, with an elevation ranging from 2050 to 2350m a.s.l. The lapse-rate images provide the Snow Covered Area (SCA) evolution at the study site, while TLS allows obtaining high resolution information of SD distribution. With ground control points, lapse-rate images are georrectified and their information is rasterized into a 1-meter resolution Digital Elevation Model. Subsequently, for each snow season, the Melt-Out Date (MOD) of each pixel is obtained. The reconstruction increases the estimated SD lose for each time step (day) in a distributed manner; starting the reconstruction for each grid cell at the MOD (note the reverse time evolution). To do so, the reconstruction has been previously adjusted in time and space as follows. Firstly, the degree day factor (SD lose/positive average temperatures) is calculated from the information measured at an automatic weather station (AWS) located in the catchment. Afterwards, comparing the SD lose at the AWS during a specific time period (i.e. between two TLS acquisitions) to that melted on each grid cell, a coefficient is obtained for spatially distributing the SD loses. For 2012 and 2013, three TLS acquisition campaigns were available during each melting period. This way the first acquisitions of both melting periods were reserved for validation while the other two were considered for adjusting the reconstruction. Validation has revealed a very good performance of the reconstructed SD distribution when compared with the TLS data (r2 values between 0.74 and 0.8 respectively). When no calibration with TLS data was applied for distributing melt rates; this is, using the distribution coefficients for reconstructing SD of precedent years, rather similar accuracy was reached. With the spatial calibration of 2012 and 2013, the reconstructions for the two TLS acquisition dates in 2014, obtained r2 values that ranged between 0.73 and 0.76. This shows the usefulness of lapse-rate images to estimate not only SCA but also the spatial distribution of the SD when combined with TLS acquisition and punctual information on temperature and SD. In such a way it is shown the effectiveness of combining two remote sensing techniques for obtaining distributed information on snow depth.

A Proposal of TLS Implementation for Cross Certification Model

NASA Astrophysics Data System (ADS)

Kaji, Tadashi; Fujishiro, Takahiro; Tezuka, Satoru

Today, TLS is widely used for achieving a secure communication system. And TLS is used PKI for server authentication and/or client authentication. However, its PKI environment, which is called as “multiple trust anchors environment,” causes the problem that the verifier has to maintain huge number of CA certificates in the ubiquitous network because the increase of terminals connected to the network brings the increase of CAs. However, most of terminals in the ubiquitous network will not have enough memory to hold such huge number of CA certificates. Therefore, another PKI environment, “cross certification environment”, is useful for the ubiquitous network. But, because current TLS is designed for the multiple trust anchors model, TLS cannot work efficiently on the cross-certification model. This paper proposes a TLS implementation method to support the cross certification model efficiently. Our proposal reduces the size of exchanged messages between the TLS client and the TLS server during the handshake process. Therefore, our proposal is suitable for implementing TLS in the terminals that do not have enough computing power and memory in ubiquitous network.

Accuracy Assessment of a Complex Building 3d Model Reconstructed from Images Acquired with a Low-Cost Uas

NASA Astrophysics Data System (ADS)

Oniga, E.; Chirilă, C.; Stătescu, F.

2017-02-01

Nowadays, Unmanned Aerial Systems (UASs) are a wide used technique for acquisition in order to create buildings 3D models, providing the acquisition of a high number of images at very high resolution or video sequences, in a very short time. Since low-cost UASs are preferred, the accuracy of a building 3D model created using this platforms must be evaluated. To achieve results, the dean's office building from the Faculty of "Hydrotechnical Engineering, Geodesy and Environmental Engineering" of Iasi, Romania, has been chosen, which is a complex shape building with the roof formed of two hyperbolic paraboloids. Seven points were placed on the ground around the building, three of them being used as GCPs, while the remaining four as Check points (CPs) for accuracy assessment. Additionally, the coordinates of 10 natural CPs representing the building characteristic points were measured with a Leica TCR 405 total station. The building 3D model was created as a point cloud which was automatically generated based on digital images acquired with the low-cost UASs, using the image matching algorithm and different software like 3DF Zephyr, Visual SfM, PhotoModeler Scanner and Drone2Map for ArcGIS. Except for the PhotoModeler Scanner software, the interior and exterior orientation parameters were determined simultaneously by solving a self-calibrating bundle adjustment. Based on the UAS point clouds, automatically generated by using the above mentioned software and GNSS data respectively, the parameters of the east side hyperbolic paraboloid were calculated using the least squares method and a statistical blunder detection. Then, in order to assess the accuracy of the building 3D model, several comparisons were made for the facades and the roof with reference data, considered with minimum errors: TLS mesh for the facades and GNSS mesh for the roof. Finally, the front facade of the building was created in 3D based on its characteristic points using the PhotoModeler Scanner software, resulting a CAD (Computer Aided Design) model. The results showed the high potential of using low-cost UASs for building 3D model creation and if the building 3D model is created based on its characteristic points the accuracy is significantly improved.

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation

DOE PAGES

Afonine, Pavel V.; Adams, Paul D.; Urzhumtsev, Alexandre

2018-06-08

TLS modelling was developed by Schomaker and Trueblood to describe atomic displacement parameters through concerted (rigid-body) harmonic motions of an atomic group [Schomaker & Trueblood (1968), Acta Cryst. B 24 , 63–76]. The results of a TLS refinement are T , L and S matrices that provide individual anisotropic atomic displacement parameters (ADPs) for all atoms belonging to the group. These ADPs can be calculated analytically using a formula that relates the elements of the TLS matrices to atomic parameters. Alternatively, ADPs can be obtained numerically from the parameters of concerted atomic motions corresponding to the TLS matrices. Both proceduresmore » are expected to produce the same ADP values and therefore can be used to assess the results of TLS refinement. Here, the implementation of this approach in PHENIX is described and several illustrations, including the use of all models from the PDB that have been subjected to TLS refinement, are provided.« less

From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Afonine, Pavel V.; Adams, Paul D.; Urzhumtsev, Alexandre

TLS modelling was developed by Schomaker and Trueblood to describe atomic displacement parameters through concerted (rigid-body) harmonic motions of an atomic group [Schomaker & Trueblood (1968), Acta Cryst. B 24 , 63–76]. The results of a TLS refinement are T , L and S matrices that provide individual anisotropic atomic displacement parameters (ADPs) for all atoms belonging to the group. These ADPs can be calculated analytically using a formula that relates the elements of the TLS matrices to atomic parameters. Alternatively, ADPs can be obtained numerically from the parameters of concerted atomic motions corresponding to the TLS matrices. Both proceduresmore » are expected to produce the same ADP values and therefore can be used to assess the results of TLS refinement. Here, the implementation of this approach in PHENIX is described and several illustrations, including the use of all models from the PDB that have been subjected to TLS refinement, are provided.« less

Analysing rockfall processes on alpine rockfaces and the corresponding talus cones using Terrestrial Laserscanning

NASA Astrophysics Data System (ADS)

Haas, Florian; Heckmann, Tobias; Klein, Thomas; Becht, Michael

2010-05-01

In high mountain regions, rockfall plays a major role as a geomorphic process, both in terms of sediment budget and natural hazard. During the last two years, high-resolution Terrestrial Laserscanning (TLS) was applied to study (a) detachment zones and sizes of rock fall events within steep rockfaces, (b) characteristics of rockfall deposits such as surface roughness, size distribution and fragment morphology, and (c) their influence on rockfall run-out length. The investigations were carried out in three study areas located in the Northern, Central and Southern Alps (Val di Funes, Northern Dolomites/Italy; Horlachtal, Central Alps/Austria; Höllental, Northern Calcareous Alps/Germany). Within this project (funded by the German Science Foundation, DFG), rockfaces and corresponding talus cones were scanned twice a year with two scanning resolutions. Larger events were investigated by scanning large areas of rockfaces and talus cones from a great distance (~500 m). In contrast, detailed scans from shorter distances (<250m) were used to investigate the capability of the approach to detect smaller events. With this approach, it was possible to record three large and several smaller events in the three catchments. The largest event occurred in the Dolomite Alps (Val di Funes/Italy) with a volume of nearly 3300 cubic meters (8900 tons). Both the detachment zone and the depositional zones could be defined very well by a cut-and-fill analysis of the digital elevation models generated from the TLS data. In addition, ground based LIDAR data are also a very helpful tool to characterize the surface properties of talus cones and the runout distances of large boulders. The surface roughness of talus cones in all three catchments was derived from the TLS point clouds by a GIS approach according to the roughness-length method. The resulting detailed rougness maps of the talus cones will help in the future to improve existing process models which are able to model runout distances on the talus cones using friction parameters. It has often been mentioned that not only the surface roughness of the talus cone, but also the shape of the boulders itself have an influence on the runout distance. The interrelationship between rock fragment morphology (characterised by shape parameters) and runout distance was analysed at the site of a large rockfall event (>10 000 cubic meters) from the year 2003 in the northern Dolomite Alps. For these analyses, the axial ratio of 618 rocks (>50 cm long axis) in the depositional zone and their corresponding runout distance were measured using TLS data and the software RiscanPro. Results show a significant correlation between the axial ratio of the particles and their runout distance. Rocks with a "round" shape (axial ratio around 1) have a longer runout distance than elongated or irregularly shaped particles (axial ratio greater than 1).

Analysis of high quality superconducting resonators: consequences for TLS properties in amorphous oxides

NASA Astrophysics Data System (ADS)

Burnett, J.; Faoro, L.; Lindström, T.

2016-04-01

1/f noise caused by microscopic two-level systems (TLS) is known to be very detrimental to the performance of superconducting quantum devices but the nature of these TLS is still poorly understood. Recent experiments with superconducting resonators indicates that interaction between TLS in the oxide at the film-substrate interface is not negligible. Here we present data on the loss and 1/f frequency noise from two different Nb resonators with and without Pt capping and discuss what conclusions can be drawn regarding the properties of TLS in amorphous oxides. We also estimate the concentration and dipole moment of the TLS.

Distinct Tertiary Lymphoid Structure Associations and Their Prognostic Relevance in HER2 Positive and Negative Breast Cancers.

PubMed

Liu, Xia; Tsang, Julia Y S; Hlaing, Thazin; Hu, Jintao; Ni, Yun-Bi; Chan, Siu Ki; Cheung, Sai Yin; Tse, Gary M

2017-11-01

The presence of tumor infiltrating lymphocytes (TIL) is associated with favorable prognosis. Recent evidence suggested that not only their density, but also the spatial organization as tertiary lymphoid structures (TLS), play a key role in determining patient survival. In a cohort of 248 breast cancers, the clinicopathologic association and prognostic role of TLS was examined. Tertiary lymphoid structures were associated with higher tumor grade, apocrine phenotype, necrosis, extensive in situ component, lymphovascular invasion (LVI), and high TIL. For biomarkers, TLS were associated with hormone receptors negativity, HER2 positivity, and c-kit expression. Tertiary lymphoid structures were significantly related to better disease-free survival (DFS) in HER2 positive (HER2+) breast cancers (log-rank = 4.054), which was not dependent on high TIL status. The combined TLS and TIL status was an independent favorable factor associated with DFS in those cases. Interestingly, tumor cell infiltration into the TLS was found in 41.9% of TLS positive cases. It was associated with LVI in HER2 negative (HER2-) TLS positive (particularly estrogen receptor positive [ER+] HER2-) cases. In the ER+ HER2- cases, tumor cell infiltration into TLS was also associated with increased pathologic nodal stage (pN) stage and nodal involvement. Tertiary lymphoid structures showed a similar relationship with clinicopathologic features and biomarkers as TIL. The presence of TLS, irrespective of TIL level, could be an important favorable prognostic indicator in HER2+ breast cancer patients. Given the significance of TLS in promoting effective antitumor immunity, further understanding of its organization and induction may provide new opportunities to improve the current immunotherapy strategies. Despite recent interest on the clinical value of tumor infiltrating lymphocyte (TIL), little was known on the clinical significance on their spatial organization as tertiary lymphoid structures (TLS). Although TLS showed similar relationships with clinicopathologic features and biomarkers as TIL, the prognostic value of TLS, particularly in HER2 positive cancers, was independent of TIL. Moreover, tumor infiltration could be present in TLS which appears to be related to tumor invasion in HER2 negative cancers. Overall, the results demonstrated the additional value for TLS in HER2 cancer subtypes. Further investigations and its standardized evaluation will enhance its use as standard practice. © AlphaMed Press 2017.

tassel-less1 encodes a boron channel protein required for inflorescence development in maize.

PubMed

Leonard, April; Holloway, Beth; Guo, Mei; Rupe, Mary; Yu, GongXin; Beatty, Mary; Zastrow-Hayes, Gina; Meeley, Robert; Llaca, Victor; Butler, Karlene; Stefani, Tony; Jaqueth, Jennifer; Li, Bailin

2014-06-01

tassel-less1 (tls1) is a classical maize (Zea mays) inflorescence mutant. Homozygous mutant plants have no tassels or very small tassels, and ear development is also impaired. Using a positional cloning approach, ZmNIP3;1 (a NOD26-like intrinsic protein) was identified as the candidate gene for tls1. The ZmNIP3;1 gene is completely deleted in the tls1 mutant genome. Two Mutator-insertional TUSC alleles of ZmNIP3;1 exhibited tls1-like phenotypes, and allelism tests confirmed that the tls1 gene encodes ZmNIP3;1. Transgenic plants with an RNA interference (RNAi) construct to down-regulate ZmNIP3;1 also showed tls1-like phenotypes, further demonstrating that TLS1 is ZmNIP3;1. Sequence analysis suggests that ZmNIP3;1 is a boron channel protein. Foliar application of boron could rescue the tls1 phenotypes and restore the normal tassel and ear development. Gene expression analysis indicated that in comparison with that of the wild type or tls1 plants treated with boron, the transition from the vegetative to reproductive phase or the development of the floral meristem is impaired in the shoot apical meristem of the tls1 mutant plants. It is concluded that the tls1 mutant phenotypes are caused by impaired boron transport, and boron is essential for inflorescence development in maize. © The Author 2014. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Comparison of Low Cost Photogrammetric Survey with Tls and Leica Pegasus Backpack 3d Modelss

NASA Astrophysics Data System (ADS)

Masiero, A.; Fissore, F.; Guarnieri, A.; Piragnolo, M.; Vettore, A.

2017-11-01

This paper considers Leica backpack and photogrammetric surveys of a mediaeval bastion in Padua, Italy. Furhtermore, terrestrial laser scanning (TLS) survey is considered in order to provide a state of the art reconstruction of the bastion. Despite control points are typically used to avoid deformations in photogrammetric surveys and ensure correct scaling of the reconstruction, in this paper a different approach is considered: this work is part of a project aiming at the development of a system exploiting ultra-wide band (UWB) devices to provide correct scaling of the reconstruction. In particular, low cost Pozyx UWB devices are used to estimate camera positions during image acquisitions. Then, in order to obtain a metric reconstruction, scale factor in the photogrammetric survey is estimated by comparing camera positions obtained from UWB measurements with those obtained from photogrammetric reconstruction. Compared with the TLS survey, the considered photogrammetric model of the bastion results in a RMSE of 21.9cm, average error 13.4cm, and standard deviation 13.5cm. Excluding the final part of the bastion left wing, where the presence of several poles make reconstruction more difficult, (RMSE) fitting error is 17.3cm, average error 11.5cm, and standard deviation 9.5cm. Instead, comparison of Leica backpack and TLS surveys leads to an average error of 4.7cm and standard deviation 0.6cm (4.2cm and 0.3cm, respectively, by excluding the final part of the left wing).

A Yeast Model of FUS/TLS-Dependent Cytotoxicity

PubMed Central

Ju, Shulin; Tardiff, Daniel F.; Han, Haesun; Divya, Kanneganti; Zhong, Quan; Maquat, Lynne E.; Bosco, Daryl A.; Hayward, Lawrence J.; Brown, Robert H.; Lindquist, Susan; Ringe, Dagmar; Petsko, Gregory A.

2011-01-01

FUS/TLS is a nucleic acid binding protein that, when mutated, can cause a subset of familial amyotrophic lateral sclerosis (fALS). Although FUS/TLS is normally located predominantly in the nucleus, the pathogenic mutant forms of FUS/TLS traffic to, and form inclusions in, the cytoplasm of affected spinal motor neurons or glia. Here we report a yeast model of human FUS/TLS expression that recapitulates multiple salient features of the pathology of the disease-causing mutant proteins, including nuclear to cytoplasmic translocation, inclusion formation, and cytotoxicity. Protein domain analysis indicates that the carboxyl-terminus of FUS/TLS, where most of the ALS-associated mutations are clustered, is required but not sufficient for the toxicity of the protein. A genome-wide genetic screen using a yeast over-expression library identified five yeast DNA/RNA binding proteins, encoded by the yeast genes ECM32, NAM8, SBP1, SKO1, and VHR1, that rescue the toxicity of human FUS/TLS without changing its expression level, cytoplasmic translocation, or inclusion formation. Furthermore, hUPF1, a human homologue of ECM32, also rescues the toxicity of FUS/TLS in this model, validating the yeast model and implicating a possible insufficiency in RNA processing or the RNA quality control machinery in the mechanism of FUS/TLS mediated toxicity. Examination of the effect of FUS/TLS expression on the decay of selected mRNAs in yeast indicates that the nonsense-mediated decay pathway is probably not the major determinant of either toxicity or suppression. PMID:21541368

TLS from fundamentals to practice

PubMed Central

Urzhumtsev, Alexandre; Afonine, Pavel V.; Adams, Paul D.

2014-01-01

The Translation-Libration-Screw-rotation (TLS) model of rigid-body harmonic displacements introduced in crystallography by Schomaker & Trueblood (1968) is now a routine tool in macromolecular studies and is a feature of most modern crystallographic structure refinement packages. In this review we consider a number of simple examples that illustrate important features of the TLS model. Based on these examples simplified formulae are given for several special cases that may occur in structure modeling and refinement. The derivation of general TLS formulae from basic principles is also provided. This manuscript describes the principles of TLS modeling, as well as some select algorithmic details for practical application. An extensive list of applications references as examples of TLS in macromolecular crystallography refinement is provided. PMID:25249713

Helios: a Multi-Purpose LIDAR Simulation Framework for Research, Planning and Training of Laser Scanning Operations with Airborne, Ground-Based Mobile and Stationary Platforms

NASA Astrophysics Data System (ADS)

Bechtold, S.; Höfle, B.

2016-06-01

In many technical domains of modern society, there is a growing demand for fast, precise and automatic acquisition of digital 3D models of a wide variety of physical objects and environments. Laser scanning is a popular and widely used technology to cover this demand, but it is also expensive and complex to use to its full potential. However, there might exist scenarios where the operation of a real laser scanner could be replaced by a computer simulation, in order to save time and costs. This includes scenarios like teaching and training of laser scanning, development of new scanner hardware and scanning methods, or generation of artificial scan data sets to support the development of point cloud processing and analysis algorithms. To test the feasibility of this idea, we have developed a highly flexible laser scanning simulation framework named Heidelberg LiDAR Operations Simulator (HELIOS). HELIOS is implemented as a Java library and split up into a core component and multiple extension modules. Extensible Markup Language (XML) is used to define scanner, platform and scene models and to configure the behaviour of modules. Modules were developed and implemented for (1) loading of simulation assets and configuration (i.e. 3D scene models, scanner definitions, survey descriptions etc.), (2) playback of XML survey descriptions, (3) TLS survey planning (i.e. automatic computation of recommended scanning positions) and (4) interactive real-time 3D visualization of simulated surveys. As a proof of concept, we show the results of two experiments: First, a survey planning test in a scene that was specifically created to evaluate the quality of the survey planning algorithm. Second, a simulated TLS scan of a crop field in a precision farming scenario. The results show that HELIOS fulfills its design goals.

Relating structural growth environment to white spruce sapling establishment at the Forest-Tundra Ecotone

NASA Astrophysics Data System (ADS)

Maguire, A.; Boelman, N.; Griffin, K. L.; Jensen, J.; Hiers, E.; Johnson, D. M.; Vierling, L. A.; Eitel, J.

2017-12-01

The effect of climate change on treeline position at the latitudinal Forest-Tundra ecotone (FTE) is poorly understood. While the FTE is expansive (stretching 13,000 km acros the panarctic), understanding relationships between climate and tree function may depend on very fine scale processes. High resolution tools are therefore needed to appropriately characterize the leading (northernmost) edge of the FTE. We hypothesized that microstructural metrics obtainable from lidar remote sensing may explain variation in the physical growth environment that governs sapling establishment. To test our hypothesis, we used terrestrial laser scanning (TLS) to collect highly spatially resolved 3-D structural information of white spruce (Picea glauca) saplings and their aboveground growth environment at the leading edge of a FTE in northern Alaska and Northwest Territories, Canada. Coordinates of sapling locations were extracted from the 3-D TLS data. Within each sampling plot, 20 sets of coordinates were randomly selected from regions where no saplings were present. Ground roughness, canopy roughness, average aspect, average slope, average curvature, wind shelter index, and wetness indexwere extracted from point clouds within a variable radius from all coordinates. Generalized linear models (GLM) were fit to determine which microstructural metrics were most strongly associated with sapling establishment. Preliminary analyses of three plots suggest that vegetation roughness, wetness index, ground roughness, and slope were the most important terrain metrics governing sapling presence (Figure 1). Comprehensive analyses will include eight plots and GLMs optimized for scale at which structural parameters affect sapling establishment. Spatial autocorrelation of sample locations will be accounted for in models. Because these analyses address how the physical growth environment affects sapling establishment, model outputs will provide information for improving understanding of the ecological processes that regulate treeline dynamics. Moreover, establishing relationships between the remotely sensed structural growth environment and tree establishment provides new ways of spatially scaling across larger areas to study ecological change at the FTE.

Transport of Boron by the tassel-less1 Aquaporin Is Critical for Vegetative and Reproductive Development in Maize[C][W][OPEN

PubMed Central

Durbak, Amanda R.; Phillips, Kimberly A.; Pike, Sharon; O’Neill, Malcolm A.; Mares, Jonathan; Gallavotti, Andrea; Malcomber, Simon T.; Gassmann, Walter; McSteen, Paula

2014-01-01

The element boron (B) is an essential plant micronutrient, and B deficiency results in significant crop losses worldwide. The maize (Zea mays) tassel-less1 (tls1) mutant has defects in vegetative and inflorescence development, comparable to the effects of B deficiency. Positional cloning revealed that tls1 encodes a protein in the aquaporin family co-orthologous to known B channel proteins in other species. Transport assays show that the TLS1 protein facilitates the movement of B and water into Xenopus laevis oocytes. B content is reduced in tls1 mutants, and application of B rescues the mutant phenotype, indicating that the TLS1 protein facilitates the movement of B in planta. B is required to cross-link the pectic polysaccharide rhamnogalacturonan II (RG-II) in the cell wall, and the percentage of RG-II dimers is reduced in tls1 inflorescences, indicating that the defects may result from altered cell wall properties. Plants heterozygous for both tls1 and rotten ear (rte), the proposed B efflux transporter, exhibit a dosage-dependent defect in inflorescence development under B-limited conditions, indicating that both TLS1 and RTE function in the same biological processes. Together, our data provide evidence that TLS1 is a B transport facilitator in maize, highlighting the importance of B homeostasis in meristem function. PMID:25035406

Detection of seasonal cycles of erosion processes in a black marl gully from a time series of high-resolution digital elevation models (DEMs)

NASA Astrophysics Data System (ADS)

Bechet, Jacques; Duc, Julien; Loye, Alexandre; Jaboyedoff, Michel; Mathys, Nicolle; Malet, Jean-Philippe; Klotz, Sébastien; Le Bouteiller, Caroline; Rudaz, Benjamin; Travelletti, Julien

2016-10-01

The Roubine catchment located in the experimental research station of Draix-Bléone (south French Alps) is situated in Callovo-Oxfordian black marls, a lithology particularly prone to erosion and weathering processes. For 30 years, this small watershed (0.13 ha) has been monitored for analysing hillslope processes on the scale of elementary gullies. Since 2007, surface changes have been monitored by comparing high-resolution digital elevation models (HRDEMs) produced from terrestrial laser scanner (TLS). The objectives are (1) to detect and (2) to quantify the sediment production and the evolution of the gully morphology in terms of sediment availability/transport capacity vs. rainfall and runoff generation. Time series of TLS observations have been acquired periodically based on the seasonal runoff activity with a very high point cloud density ensuring a resolution of the digital elevation model (DEM) on the centimetre scale. The topographic changes over a time span of 2 years are analysed. Quantitative analyses of the seasonal erosion activity and of the sediment fluxes show and confirm that during winter, loose regolith is created by mechanical weathering, and it is eroded and accumulates in the rills and gullies. Because of limited rainfall intensity in spring, part of the material is transported in the main gullies, which are assumed to be a transport-limited erosion system. In the late spring and summer the rainfall intensities increase, allowing the regolith, weathered and accumulated in the gullies and rills during the earlier seasons, to be washed out. Later in the year the catchment acts as a sediment-limited system because no more loose regolith is available. One interesting result is the fact that in the gullies the erosion-deposition processes are more active around the slope angle value of 35°, which probably indicates a behaviour close to dry granular material. It is also observed that there exist thresholds for the rainfall events that are able to trigger significant erosion; they are above 9 mm rainfall or of an intensity of more than 1 mm min-1, values which can vary if antecedent precipitation is significant within the last 5 days.

This study improves knowledge of the spatial distribution of erosion seasonality in badlands and demonstrates the potential of careful 3-D high-resolution topography using TLS to improve the understanding of erosive processes.

Time-lapse systems for embryo incubation and assessment in assisted reproduction.

PubMed

Armstrong, Sarah; Bhide, Priya; Jordan, Vanessa; Pacey, Allan; Farquhar, Cindy

2018-05-25

Embryo incubation and assessment is a vital step in assisted reproductive technology (ART). Traditionally, embryo assessment has been achieved by removing embryos from a conventional incubator daily for quality assessment by an embryologist, under a light microscope. Over recent years time-lapse systems have been developed which can take digital images of embryos at frequent time intervals. This allows embryologists, with or without the assistance of embryo selection software, to assess the quality of the embryos without physically removing them from the incubator.The potential advantages of a time-lapse system (TLS) include the ability to maintain a stable culture environment, therefore limiting the exposure of embryos to changes in gas composition, temperature and movement. A TLS has the potential advantage of improving embryo selection for ART treatment by utilising additional information gained through continuously monitoring embryo development. Use of a TLS often adds significant extra cost onto an in vitro fertilisation (IVF) cycle. To determine the effect of a TLS compared to conventional embryo incubation and assessment on clinical outcomes in couples undergoing ART. We used standard methodology recommended by Cochrane. We searched the Cochrane Gynaecology and Fertility (CGF) Group trials register, CENTRAL, MEDLINE, Embase, CINAHL and two trials registers on 2 August 2017. We included randomised controlled trials (RCTs) in the following comparisons: comparing a TLS, with or without embryo selection software, versus conventional incubation with morphological assessment; and TLS with embryo selection software versus TLS without embryo selection software among couples undergoing ART. We used standard methodological procedures recommended by Cochrane. The primary review outcomes were live birth, miscarriage and stillbirth. Secondary outcomes were clinical pregnancy and cumulative clinical pregnancy. We reported quality of the evidence for important outcomes using GRADE methodology. We made the following comparisons.TLS with conventional morphological assessment of still TLS images versus conventional incubation and assessmentTLS utilising embryo selection software versus TLS with conventional morphological assessment of still TLS images TLS utilising embryo selection software versus conventional incubation and assessment MAIN RESULTS: We included eight RCTs (N = 2303 women). The quality of the evidence ranged from very low to moderate. The main limitations were imprecision and risk of bias associated with lack of blinding of participants and researchers, and indirectness secondary to significant heterogeneity between interventions in some studies. There were no data on cumulative clinical pregnancy.TLS with conventional morphological assessment of still TLS images versus conventional incubation and assessmentThere is no evidence of a difference between the interventions in terms of live birth rates (odds ratio (OR) 0.73, 95% CI 0.47 to 1.13, 2 RCTs, N = 440, I 2 = 11% , moderate-quality evidence) and may also be no evidence of difference in miscarriage rates (OR 2.25, 95% CI 0.84 to 6.02, 2 RCTs, N = 440, I 2 = 44%, low-quality evidence). The evidence suggests that if the live birth rate associated with conventional incubation and assessment is 33%, the rate with use of TLS with conventional morphological assessment of still TLS images is between 19% and 36%; and that if the miscarriage rate with conventional incubation is 3%, the rate associated with conventional morphological assessment of still TLS images would be between 3% and 18%. There is no evidence of a difference between the interventions in the stillbirth rate (OR 1.00, 95% CI 0.13 to 7.49, 1 RCT, N = 76, low-quality evidence). There is no evidence of a difference between the interventions in clinical pregnancy rates (OR 0.88, 95% CI 0.58 to 1.33, 3 RCTs, N = 489, I 2 = 0%, moderate-quality evidence).TLS utilising embryo selection software versus TLS with conventional morphological assessment of still TLS imagesNo data were available on live birth or stillbirth. We are uncertain whether TLS utilising embryo selection software influences miscarriage rates (OR 1.39, 95% CI 0.64 to 3.01, 2 RCTs, N = 463, I 2 = 0%, very low-quality evidence) and there may be no difference in clinical pregnancy rates (OR 0.97, 95% CI 0.67 to 1.42, 2 RCTs, N = 463, I 2 = 0%, low-quality evidence). The evidence suggests that if the miscarriage rate associated with assessment of still TLS images is 5%, the rate with embryo selection software would be between 3% and 14%.TLS utilising embryo selection software versus conventional incubation and assessmentThere is no evidence of a difference between TLS utilising embryo selection software and conventional incubation improving live birth rates (OR 1.21, 95% CI 0.96 to 1.54, 2 RCTs, N = 1017, I 2 = 0%, very low-quality evidence). We are uncertain whether TLS influences miscarriage rates (OR 0.73, 95% CI 0.49 to 1.08, 3 RCTs, N = 1351, I 2 = 0%, very low-quality evidence). The evidence suggests that if the live birth rate associated with no TLS is 38%, the rate with use of conventional incubation would be between 36% and 58%, and that if miscarriage rate with conventional incubation is 9%, the rate associated with TLS would be between 4% and 10%. No data on stillbirths were available. It was uncertain whether the intervention influenced clinical pregnancy rates (OR 1.17, 95% CI 0.94 to 1.45, 3 RCTs, N = 1351, I 2 = 42%, very low-quality evidence). There is insufficient evidence of differences in live birth, miscarriage, stillbirth or clinical pregnancy to choose between TLS, with or without embryo selection software, and conventional incubation. The studies were at high risk of bias for randomisation and allocation concealment, the result should be interpreted with extreme caution.

Tumor Lysis Syndrome in Chronic Lymphocytic Leukemia with Novel Targeted Agents.

PubMed

Cheson, Bruce D; Heitner Enschede, Sari; Cerri, Elisa; Desai, Monali; Potluri, Jalaja; Lamanna, Nicole; Tam, Constantine

2017-11-01

Tumor lysis syndrome (TLS) is an uncommon but potentially life-threatening complication associated with the treatment of some cancers. If left untreated, TLS may result in acute renal failure, cardiac dysrhythmia, neurologic complications, seizures, or death. Tumor lysis syndrome is most commonly observed in patients with hematologic malignancies with a high proliferation rate undergoing treatment with very effective therapies. In chronic lymphocytic leukemia (CLL), historically, TLS has been observed less often, owing to a low proliferation rate and slow response to chemotherapy. New targeted therapies have recently been approved in the treatment of CLL, including the oral kinase inhibitors, idelalisib and ibrutinib, and the B-cell lymphoma-2 protein inhibitor, venetoclax. Several others are also under development, and combination strategies of these agents are being explored. This review examines the diagnosis, prevention, and management of TLS and summarizes the TLS experience in CLL clinical trials with newer targeted agents. Overall, the risk of TLS is small, but the consequences may be fatal; therefore, patients should be monitored carefully. Therapies capable of eliciting rapid response and combination regimens are increasingly being evaluated for treatment of CLL, which may pose a higher risk of TLS. For optimal management, patients at risk for TLS require prophylaxis and close monitoring with appropriate tests and appropriate management to correct laboratory abnormalities, which allows for safe and effective disease control. Tumor lysis syndrome (TLS) is a potentially fatal condition observed with hematologic malignancies, caused by release of cellular components in the bloodstream from rapidly dying tumor cells. The frequency and severity of TLS is partly dependent upon the biology of the disease and type of therapy administered. Novel targeted agents highly effective at inducing rapid cell death in chronic lymphocytic leukemia (CLL) may pose a risk for TLS in patients with tumors characterized by rapid growth, high tumor burden, and/or high sensitivity to treatment. In this review, prevention strategies and management of patients with CLL who develop TLS are described. © 2017 The Authors The Oncologist published by Wiley Periodicals, Inc. on behalf of AlphaMed Press.

Using Frankencerts for Automated Adversarial Testing of Certificate Validation in SSL/TLS Implementations.

PubMed

Brubaker, Chad; Jana, Suman; Ray, Baishakhi; Khurshid, Sarfraz; Shmatikov, Vitaly

2014-01-01

Modern network security rests on the Secure Sockets Layer (SSL) and Transport Layer Security (TLS) protocols. Distributed systems, mobile and desktop applications, embedded devices, and all of secure Web rely on SSL/TLS for protection against network attacks. This protection critically depends on whether SSL/TLS clients correctly validate X.509 certificates presented by servers during the SSL/TLS handshake protocol. We design, implement, and apply the first methodology for large-scale testing of certificate validation logic in SSL/TLS implementations. Our first ingredient is "frankencerts," synthetic certificates that are randomly mutated from parts of real certificates and thus include unusual combinations of extensions and constraints. Our second ingredient is differential testing: if one SSL/TLS implementation accepts a certificate while another rejects the same certificate, we use the discrepancy as an oracle for finding flaws in individual implementations. Differential testing with frankencerts uncovered 208 discrepancies between popular SSL/TLS implementations such as OpenSSL, NSS, CyaSSL, GnuTLS, PolarSSL, MatrixSSL, etc. Many of them are caused by serious security vulnerabilities. For example, any server with a valid X.509 version 1 certificate can act as a rogue certificate authority and issue fake certificates for any domain, enabling man-in-the-middle attacks against MatrixSSL and GnuTLS. Several implementations also accept certificate authorities created by unauthorized issuers, as well as certificates not intended for server authentication. We also found serious vulnerabilities in how users are warned about certificate validation errors. When presented with an expired, self-signed certificate, NSS, Safari, and Chrome (on Linux) report that the certificate has expired-a low-risk, often ignored error-but not that the connection is insecure against a man-in-the-middle attack. These results demonstrate that automated adversarial testing with frankencerts is a powerful methodology for discovering security flaws in SSL/TLS implementations.

Using Frankencerts for Automated Adversarial Testing of Certificate Validation in SSL/TLS Implementations

PubMed Central

Brubaker, Chad; Jana, Suman; Ray, Baishakhi; Khurshid, Sarfraz; Shmatikov, Vitaly

2014-01-01

Modern network security rests on the Secure Sockets Layer (SSL) and Transport Layer Security (TLS) protocols. Distributed systems, mobile and desktop applications, embedded devices, and all of secure Web rely on SSL/TLS for protection against network attacks. This protection critically depends on whether SSL/TLS clients correctly validate X.509 certificates presented by servers during the SSL/TLS handshake protocol. We design, implement, and apply the first methodology for large-scale testing of certificate validation logic in SSL/TLS implementations. Our first ingredient is “frankencerts,” synthetic certificates that are randomly mutated from parts of real certificates and thus include unusual combinations of extensions and constraints. Our second ingredient is differential testing: if one SSL/TLS implementation accepts a certificate while another rejects the same certificate, we use the discrepancy as an oracle for finding flaws in individual implementations. Differential testing with frankencerts uncovered 208 discrepancies between popular SSL/TLS implementations such as OpenSSL, NSS, CyaSSL, GnuTLS, PolarSSL, MatrixSSL, etc. Many of them are caused by serious security vulnerabilities. For example, any server with a valid X.509 version 1 certificate can act as a rogue certificate authority and issue fake certificates for any domain, enabling man-in-the-middle attacks against MatrixSSL and GnuTLS. Several implementations also accept certificate authorities created by unauthorized issuers, as well as certificates not intended for server authentication. We also found serious vulnerabilities in how users are warned about certificate validation errors. When presented with an expired, self-signed certificate, NSS, Safari, and Chrome (on Linux) report that the certificate has expired—a low-risk, often ignored error—but not that the connection is insecure against a man-in-the-middle attack. These results demonstrate that automated adversarial testing with frankencerts is a powerful methodology for discovering security flaws in SSL/TLS implementations. PMID:25404868

Implementation of Phased Array Antenna Technology Providing a Wireless Local Area Network to Enhance Port Security and Maritime Interdiction Operations

DTIC Science & Technology

2009-09-01

boarding team, COTS, WLAN, smart antenna, OpenVPN application, wireless base station, OFDM, latency, point-to-point wireless link. 16. PRICE CODE 17...16 c. SSL/TLS .................................17 2. OpenVPN ......................................17 III. EXPERIMENT METHODOLOGY...network frame at Layer 2 has already been secured by encryption at a higher level. 2. OpenVPN OpenVPN is open source software that provides a VPN

The p21 and PCNA partnership: a new twist for an old plot.

PubMed

Prives, Carol; Gottifredi, Vanesa

2008-12-15

The contribution of error-prone DNA polymerases to the DNA damage response has been a subject of great interest in the last decade. Error-prone polymerases are required for translesion DNA synthesis (TLS), a process that involves synthesis past a DNA lesion. Under certain circumstances, TLS polymerases can achieve bypass with good efficiency and fidelity. However, they can also in some cases be mutagenic, and so negative regulators of TLS polymerases would have the important function of inhibiting their recruitment to undamaged DNA templates. Recent work from Livneh's and our groups have provided evidence regarding the role of the cyclin kinase inhibitor p21 as a negative regulator of TLS. Interestingly, both the cyclin dependent kinase (CDK) and proliferating cell nuclear antigen (PCNA) binding domains of p21 are involved in different aspects of the modulation of TLS, affecting both the interaction between PCNA and the TLS-specific pol eta as well as PCNA ubiquitination status. In line with this, p21 was shown to reduce the efficiency but increase the accuracy of TLS. Hence, in absence of DNA damage p21 may work to impede accidental loading of pol eta to undamaged DNA and avoid consequential mutagenesis. After UV irradiation, when TLS plays a decisive role, p21 is progressively degraded. This might allow gradual release of replication fork blockage by TLS polymerases. For these reasons, in higher eukaryotes p21 might represent a key regulator of the equilibrium between mutagenesis and cell survival.

Authentication Binding between SSL/TLS and HTTP

NASA Astrophysics Data System (ADS)

Saito, Takamichi; Sekiguchi, Kiyomi; Hatsugai, Ryosuke

While the Secure Socket Layer or Transport Layer Security (SSL/TLS) is assumed to provide secure communications over the Internet, many web applications utilize basic or digest authentication of Hyper Text Transport Protocol (HTTP) over SSL/TLS. Namely, in the scheme, there are two different authentication schemes in a session. Since they are separated by a layer, these are not convenient for a web application. Moreover, the scheme may also cause problems in establishing secure communication. Then we provide a scheme of authentication binding between SSL/TLS and HTTP without modifying SSL/TLS protocols and its implementation, and we show the effectiveness of our proposed scheme.

The application of structure from motion (SfM) to identify the geological structure and outcrop studies

NASA Astrophysics Data System (ADS)

Saputra, Aditya; Rahardianto, Trias; Gomez, Christopher

2017-07-01

Adequate knowledge of geological structure is an essential for most studies in geoscience, mineral exploration, geo-hazard and disaster management. The geological map is still one the datasets the most commonly used to obtain information about the geological structure such as fault, joint, fold, and unconformities, however in rural areas such as Central Java data is still sparse. Recent progress in data acquisition technologies and computing have increased the interest in how to capture the high-resolution geological data effectively and for a relatively low cost. Some methods such as Airborne Laser Scanning (ALS), Terrestrial Laser Scanning (TLS), and Unmanned Aerial Vehicles (UAVs) have been widely used to obtain this information, however, these methods need a significant investment in hardware, software, and time. Resolving some of those issues, the photogrammetric method structure from motion (SfM) is an image-based method, which can provide solutions equivalent to laser technologies for a relatively low-cost with minimal time, specialization and financial investment. Using SfM photogrammetry, it is possible to generate high resolution 3D images rock surfaces and outcrops, in order to improve the geological understanding of Indonesia. In the present contribution, it is shown that the information about fault and joint can be obtained at high-resolution and in a shorter time than with the conventional grid mapping and remotely sensed topographic surveying. The SfM method produces a point-cloud through image matching and computing. This task can be run with open- source or commercial image processing and 3D reconstruction software. As the point cloud has 3D information as well as RGB values, it allows for further analysis such as DEM extraction and image orthorectification processes. The present paper describes some examples of SfM to identify the fault in the outcrops and also highlight the future possibilities in terms of earthquake hazard assessment, based on fieldwork in the South of Yogyakarta City.

The evaluation of unmanned aerial system-based photogrammetry and terrestrial laser scanning to generate DEMs of agricultural watersheds

NASA Astrophysics Data System (ADS)

Ouédraogo, Mohamar Moussa; Degré, Aurore; Debouche, Charles; Lisein, Jonathan

2014-06-01

Agricultural watersheds tend to be places of intensive farming activities that permanently modify their microtopography. The surface characteristics of the soil vary depending on the crops that are cultivated in these areas. Agricultural soil microtopography plays an important role in the quantification of runoff and sediment transport because the presence of crops, crop residues, furrows and ridges may impact the direction of water flow. To better assess such phenomena, 3-D reconstructions of high-resolution agricultural watershed topography are essential. Fine-resolution topographic data collection technologies can be used to discern highly detailed elevation variability in these areas. Knowledge of the strengths and weaknesses of existing technologies used for data collection on agricultural watersheds may be helpful in choosing an appropriate technology. This study assesses the suitability of terrestrial laser scanning (TLS) and unmanned aerial system (UAS) photogrammetry for collecting the fine-resolution topographic data required to generate accurate, high-resolution digital elevation models (DEMs) in a small watershed area (12 ha). Because of farming activity, 14 TLS scans (≈ 25 points m- 2) were collected without using high-definition surveying (HDS) targets, which are generally used to mesh adjacent scans. To evaluate the accuracy of the DEMs created from the TLS scan data, 1098 ground control points (GCPs) were surveyed using a real time kinematic global positioning system (RTK-GPS). Linear regressions were then applied to each DEM to remove vertical errors from the TLS point elevations, errors caused by the non-perpendicularity of the scanner's vertical axis to the local horizontal plane, and errors correlated with the distance to the scanner's position. The scans were then meshed to generate a DEMTLS with a 1 × 1 m spatial resolution. The Agisoft PhotoScan and MicMac software packages were used to process the aerial photographs and generate a DEMPSC (Agisoft PhotoScan) and DEMMCM (MicMac), respectively, with spatial resolutions of 1 × 1 m. Comparing the DEMs with the 1098 GCPs showed that the DEMTLS was the most accurate data product, with a root mean square error (RMSE) of 4.5 cm, followed by the DEMMCM and the DEMPSC, which had RMSE values of 9.0 and 13.9 cm, respectively. The DEMPSC had absolute errors along the border of the study area that ranged from 15.0 to 52.0 cm, indicating the presence of systematic errors. Although the derived DEMMCM was accurate, an error analysis along a transect showed that the errors in the DEMMCM data tended to increase in areas of lower elevation. Compared with TLS, UAS is a promising tool for data collection because of its flexibility and low operational cost. However, improvements are needed in the photogrammetric processing of the aerial photographs to remove non-linear distortions.

Characterization of human translesion DNA synthesis across a UV-induced DNA lesion

PubMed Central

Hedglin, Mark; Pandey, Binod; Benkovic, Stephen J

2016-01-01

Translesion DNA synthesis (TLS) during S-phase uses specialized TLS DNA polymerases to replicate a DNA lesion, allowing stringent DNA synthesis to resume beyond the offending damage. Human TLS involves the conjugation of ubiquitin to PCNA clamps encircling damaged DNA and the role of this post-translational modification is under scrutiny. A widely-accepted model purports that ubiquitinated PCNA recruits TLS polymerases such as pol η to sites of DNA damage where they may also displace a blocked replicative polymerase. We provide extensive quantitative evidence that the binding of pol η to PCNA and the ensuing TLS are both independent of PCNA ubiquitination. Rather, the unique properties of pols η and δ are attuned to promote an efficient and passive exchange of polymerases during TLS on the lagging strand. DOI: http://dx.doi.org/10.7554/eLife.19788.001 PMID:27770570

A Pharmacokinetic/Pharmacodynamic Model of Tumor Lysis Syndrome in Chronic Lymphocytic Leukemia Patients Treated with Flavopiridol

PubMed Central

Ji, Jia; Mould, Diane R.; Blum, Kristie A.; Ruppert, Amy S.; Poi, Ming; Zhao, Yuan; Johnson, Amy J.; Byrd, John C.; Grever, Michael R.; Phelps, Mitch A.

2013-01-01

Purpose Flavopiridol, the first clinically evaluated cyclin dependent kinase inhibitor, demonstrates activity in patients with refractory chronic lymphocytic leukemia, but prevalent and unpredictable tumor lysis syndrome (TLS) presents a major barrier to its broad clinical use. The purpose of this study was to investigate the relationships between pretreatment risk factors, drug pharmacokinetics, and TLS. Experimental Design A population pharmacokinetic/pharmacodynamic model linking drug exposure and TLS was developed. Plasma data of flavopiridol and its glucuronide metabolite (flavo-G) were obtained from 111 patients treated in early phase trials with frequent sampling following initial and/or escalated doses. TLS grading was modeled with logistic regression as a pharmacodynamic endpoint. Demographics, baseline disease status, and blood chemistry variables were evaluated as covariates. Results Gender was the most significant pharmacokinetic covariate, with females displaying higher flavo-G exposure than males. Glucuronide metabolite exposure was predictive of TLS occurrence, and bulky lymphadenopathy was identified as a significant covariate on TLS probability. The estimated probability of TLS occurrence in patients with baseline bulky lymphadenopathy < 10 cm or > 10 cm during the first two treatments was 0.111 (SE% 13.0%) and 0.265, (SE% 17.9%) respectively, when flavo-G area under the plasma concentration vs. time curve was at its median value in whole patient group. Conclusions This is the first population pharmacokinetic/pharmacodynamic model of TLS. Further work is needed to explore potential mechanisms and to determine if the associations between TLS, gender and glucuronide metabolites are relevant in CLL patients treated with other cyclin dependent kinase inhibitors. PMID:23300276

TLSpy: An Open-Source Addition to Terrestrial Lidar Workflows

NASA Astrophysics Data System (ADS)

Frechette, J. D.; Weissmann, G. S.; Wawrzyniec, T. F.

2008-12-01

Terrestrial lidar scanners (TLS) that capture three dimensional (3D) geometry with cm scale precision present many new opportunities in the Earth Sciences and related fields. However, the lack of domain specific tools impedes full and efficient utilization of the information contained in these datasets. Most processing and analysis is performed using a variety of manufacturing, surveying, airborne lidar, and GIS software. Although much overlap exists, inevitably some needs are not addressed by these applications. TLSpy provides a plugin driven framework with 3D visualization capabilities that encourages researchers to fill these gaps. The goal is to free researchers from the intellectual overhead imposed by user and data interface design, enabling rapid development of TLS specific processing and analysis algorithms. We present two plugins as examples of problems that TLSpy is being applied to. The first plugin corrects for the strong influence of target orientation on TLS measured reflectance intensities. It calculates the distribution of incidence angles and intensities in an input scan and assists the user in fitting a reflectance model to the distribution. The model is then used to normalize input intensities, minimizing the impact of surface orientation and simplifying the extraction of quantitative data from reflectance measurements. Although reasonable default models can be determined the large number of factors influencing reflectance values require that the plugin be designed for maximum flexibility, allowing the user to adjust all model parameters and define new reflectance models as needed. The second plugin helps eliminate multipath reflections from water surfaces. Characterized by a lower intensity mirror image of the subaerial bank appearing below the water surface, these reflections are a common problem in scans containing water. These erroneous reflections can be removed by manually selecting points that lie on the waterline, fitting a plane to the points, and deleting points below that plane. This plugin simplifies the process by automatically identifying waterline points using characteristic changes in geometry and intensity. Automatic identification is often faster and more reliable than manual identification, however, manual control is retained as a fallback for degenerate cases.

Identification of Small Molecule Translesion Synthesis Inhibitors That Target the Rev1-CT/RIR Protein-Protein Interaction.

PubMed

Sail, Vibhavari; Rizzo, Alessandro A; Chatterjee, Nimrat; Dash, Radha C; Ozen, Zuleyha; Walker, Graham C; Korzhnev, Dmitry M; Hadden, M Kyle

2017-07-21

Translesion synthesis (TLS) is an important mechanism through which proliferating cells tolerate DNA damage during replication. The mutagenic Rev1/Polζ-dependent branch of TLS helps cancer cells survive first-line genotoxic chemotherapy and introduces mutations that can contribute to the acquired resistance so often observed with standard anticancer regimens. As such, inhibition of Rev1/Polζ-dependent TLS has recently emerged as a strategy to enhance the efficacy of first-line chemotherapy and reduce the acquisition of chemoresistance by decreasing tumor mutation rate. The TLS DNA polymerase Rev1 serves as an integral scaffolding protein that mediates the assembly of the active multiprotein TLS complexes. Protein-protein interactions (PPIs) between the C-terminal domain of Rev1 (Rev1-CT) and the Rev1-interacting region (RIR) of other TLS DNA polymerases play an essential role in regulating TLS activity. To probe whether disrupting the Rev1-CT/RIR PPI is a valid approach for developing a new class of targeted anticancer agents, we designed a fluorescence polarization-based assay that was utilized in a pilot screen for small molecule inhibitors of this PPI. Two small molecule scaffolds that disrupt this interaction were identified, and secondary validation assays confirmed that compound 5 binds to Rev1-CT at the RIR interface. Finally, survival and mutagenesis assays in mouse embryonic fibroblasts and human fibrosarcoma HT1080 cells treated with cisplatin and ultraviolet light indicate that these compounds inhibit mutagenic Rev1/Polζ-dependent TLS in cells, validating the Rev1-CT/RIR PPI for future anticancer drug discovery and identifying the first small molecule inhibitors of TLS that target Rev1-CT.

Bounding uncertainty in volumetric geometric models for terrestrial lidar observations of ecosystems.

PubMed

Paynter, Ian; Genest, Daniel; Peri, Francesco; Schaaf, Crystal

2018-04-06

Volumetric models with known biases are shown to provide bounds for the uncertainty in estimations of volume for ecologically interesting objects, observed with a terrestrial laser scanner (TLS) instrument. Bounding cuboids, three-dimensional convex hull polygons, voxels, the Outer Hull Model and Square Based Columns (SBCs) are considered for their ability to estimate the volume of temperate and tropical trees, as well as geomorphological features such as bluffs and saltmarsh creeks. For temperate trees, supplementary geometric models are evaluated for their ability to bound the uncertainty in cylinder-based reconstructions, finding that coarser volumetric methods do not currently constrain volume meaningfully, but may be helpful with further refinement, or in hybridized models. Three-dimensional convex hull polygons consistently overestimate object volume, and SBCs consistently underestimate volume. Voxel estimations vary in their bias, due to the point density of the TLS data, and occlusion, particularly in trees. The response of the models to parametrization is analysed, observing unexpected trends in the SBC estimates for the drumlin dataset. Establishing that this result is due to the resolution of the TLS observations being insufficient to support the resolution of the geometric model, it is suggested that geometric models with predictable outcomes can also highlight data quality issues when they produce illogical results.

Development of Image Segmentation Methods for Intracranial Aneurysms

PubMed Central

Qian, Yi; Morgan, Michael

2013-01-01

Though providing vital means for the visualization, diagnosis, and quantification of decision-making processes for the treatment of vascular pathologies, vascular segmentation remains a process that continues to be marred by numerous challenges. In this study, we validate eight aneurysms via the use of two existing segmentation methods; the Region Growing Threshold and Chan-Vese model. These methods were evaluated by comparison of the results obtained with a manual segmentation performed. Based upon this validation study, we propose a new Threshold-Based Level Set (TLS) method in order to overcome the existing problems. With divergent methods of segmentation, we discovered that the volumes of the aneurysm models reached a maximum difference of 24%. The local artery anatomical shapes of the aneurysms were likewise found to significantly influence the results of these simulations. In contrast, however, the volume differences calculated via use of the TLS method remained at a relatively low figure, at only around 5%, thereby revealing the existence of inherent limitations in the application of cerebrovascular segmentation. The proposed TLS method holds the potential for utilisation in automatic aneurysm segmentation without the setting of a seed point or intensity threshold. This technique will further enable the segmentation of anatomically complex cerebrovascular shapes, thereby allowing for more accurate and efficient simulations of medical imagery. PMID:23606905

Bounding uncertainty in volumetric geometric models for terrestrial lidar observations of ecosystems

PubMed Central

Genest, Daniel; Peri, Francesco; Schaaf, Crystal

2018-01-01

Volumetric models with known biases are shown to provide bounds for the uncertainty in estimations of volume for ecologically interesting objects, observed with a terrestrial laser scanner (TLS) instrument. Bounding cuboids, three-dimensional convex hull polygons, voxels, the Outer Hull Model and Square Based Columns (SBCs) are considered for their ability to estimate the volume of temperate and tropical trees, as well as geomorphological features such as bluffs and saltmarsh creeks. For temperate trees, supplementary geometric models are evaluated for their ability to bound the uncertainty in cylinder-based reconstructions, finding that coarser volumetric methods do not currently constrain volume meaningfully, but may be helpful with further refinement, or in hybridized models. Three-dimensional convex hull polygons consistently overestimate object volume, and SBCs consistently underestimate volume. Voxel estimations vary in their bias, due to the point density of the TLS data, and occlusion, particularly in trees. The response of the models to parametrization is analysed, observing unexpected trends in the SBC estimates for the drumlin dataset. Establishing that this result is due to the resolution of the TLS observations being insufficient to support the resolution of the geometric model, it is suggested that geometric models with predictable outcomes can also highlight data quality issues when they produce illogical results. PMID:29503722

Regulation of error-prone translesion synthesis by Spartan/C1orf124

PubMed Central

Kim, Myoung Shin; Machida, Yuka; Vashisht, Ajay A.; Wohlschlegel, James A.; Pang, Yuan-Ping; Machida, Yuichi J.

2013-01-01

Translesion synthesis (TLS) employs low fidelity polymerases to replicate past damaged DNA in a potentially error-prone process. Regulatory mechanisms that prevent TLS-associated mutagenesis are unknown; however, our recent studies suggest that the PCNA-binding protein Spartan plays a role in suppression of damage-induced mutagenesis. Here, we show that Spartan negatively regulates error-prone TLS that is dependent on POLD3, the accessory subunit of the replicative DNA polymerase Pol δ. We demonstrate that the putative zinc metalloprotease domain SprT in Spartan directly interacts with POLD3 and contributes to suppression of damage-induced mutagenesis. Depletion of Spartan induces complex formation of POLD3 with Rev1 and the error-prone TLS polymerase Pol ζ, and elevates mutagenesis that relies on POLD3, Rev1 and Pol ζ. These results suggest that Spartan negatively regulates POLD3 function in Rev1/Pol ζ-dependent TLS, revealing a previously unrecognized regulatory step in error-prone TLS. PMID:23254330

Toward extending terrestrial laser scanning applications in forestry: a case study of broad- and needle-leaf tree classification

NASA Astrophysics Data System (ADS)

Lin, Yi; Jiang, Miao

2017-01-01

Tree species information is essential for forest research and management purposes, which in turn require approaches for accurate and precise classification of tree species. One such remote sensing technology, terrestrial laser scanning (TLS), has proved to be capable of characterizing detailed tree structures, such as tree stem geometry. Can TLS further differentiate between broad- and needle-leaves? If the answer is positive, TLS data can be used for classification of taxonomic tree groups by directly examining their differences in leaf morphology. An analysis was proposed to assess TLS-represented broad- and needle-leaf structures, followed by a Bayes classifier to perform the classification. Tests indicated that the proposed method can basically implement the task, with an overall accuracy of 77.78%. This study indicates a way of implementing the classification of the two major broad- and needle-leaf taxonomies measured by TLS in accordance to their literal definitions, and manifests the potential of extending TLS applications in forestry.

SSL/TLS Vulnerability Detection Using Black Box Approach

NASA Astrophysics Data System (ADS)

Gunawan, D.; Sitorus, E. H.; Rahmat, R. F.; Hizriadi, A.

2018-03-01

Socket Secure Layer (SSL) and Transport Layer Security (TLS) are cryptographic protocols that provide data encryption to secure the communication over a network. However, in some cases, there are vulnerability found in the implementation of SSL/TLS because of weak cipher key, certificate validation error or session handling error. One of the most vulnerable SSL/TLS bugs is heartbleed. As the security is essential in data communication, this research aims to build a scanner that detect the SSL/TLS vulnerability by using black box approach. This research will focus on heartbleed case. In addition, this research also gathers information about existing SSL in the server. The black box approach is used to test the output of a system without knowing the process inside the system itself. For testing purpose, this research scanned websites and found that some of the websites still have SSL/TLS vulnerability. Thus, the black box approach can be used to detect the vulnerability without considering the source code and the process inside the application.

Relationship between Physiological Off-Ice Testing, On-Ice Skating, and Game Performance in Division I Women's Ice Hockey Players.

PubMed

Boland, Michelle; Miele, Emily M; Delude, Katie

2017-10-07

The purpose was to identify off-ice testing variables that correlate to skating and game performance in Division I collegiate women ice hockey players. Twenty female, forward and defensive players (19.95 ± 1.35 yr) were assessed for weight, height, percent fat mass (%FAT), bone mineral density, predicted one repetition maximum (RM) absolute and relative (REL%) bench press (BP) and hex bar deadlift (HDL), lower body explosive power, anaerobic power, countermovement vertical jump (CMJ), maximum inspiratory pressure (MIP), and on-ice repeated skate sprint (RSS) performance. The on-ice RSS test included 6 timed 85.6 m sprints with participants wearing full hockey equipment; fastest time (FT), average time (AT) and fatigue index (FI) for the first length skate (FLS; 10 m) and total length skate (TLS; 85.6 m) were used for analysis. Game performance was evaluated with game statistics: goals, assists, points, plus-minus, and shots on goal (SOG). Correlation coefficients were used to determine relationships. Percent fat mass was positively correlated (p < 0.05) with FLS-FI and TLS-AT; TLS-FT was negatively correlated with REL%HDL; BP-RM was negatively correlated with FLS-FT and FLS-AT; MIP positively correlated with assists, points, and SOG; FLS-AT negatively correlated with assists. Game performance in women ice hockey players may be enhanced by greater MIP, repeat acceleration ability, and mode-specific training. Faster skating times were associated with lower %FAT. Skating performance in women ice hockey players may be enhanced by improving body composition, anaerobic power, and both lower and upper body strength in off-ice training.

A terrestrial lidar-based workflow for determining three-dimensional slip vectors and associated uncertainties

USGS Publications Warehouse

Gold, Peter O.; Cowgill, Eric; Kreylos, Oliver; Gold, Ryan D.

2012-01-01

Three-dimensional (3D) slip vectors recorded by displaced landforms are difficult to constrain across complex fault zones, and the uncertainties associated with such measurements become increasingly challenging to assess as landforms degrade over time. We approach this problem from a remote sensing perspective by using terrestrial laser scanning (TLS) and 3D structural analysis. We have developed an integrated TLS data collection and point-based analysis workflow that incorporates accurate assessments of aleatoric and epistemic uncertainties using experimental surveys, Monte Carlo simulations, and iterative site reconstructions. Our scanning workflow and equipment requirements are optimized for single-operator surveying, and our data analysis process is largely completed using new point-based computing tools in an immersive 3D virtual reality environment. In a case study, we measured slip vector orientations at two sites along the rupture trace of the 1954 Dixie Valley earthquake (central Nevada, United States), yielding measurements that are the first direct constraints on the 3D slip vector for this event. These observations are consistent with a previous approximation of net extension direction for this event. We find that errors introduced by variables in our survey method result in <2.5 cm of variability in components of displacement, and are eclipsed by the 10–60 cm epistemic errors introduced by reconstructing the field sites to their pre-erosion geometries. Although the higher resolution TLS data sets enabled visualization and data interactivity critical for reconstructing the 3D slip vector and for assessing uncertainties, dense topographic constraints alone were not sufficient to significantly narrow the wide (<26°) range of allowable slip vector orientations that resulted from accounting for epistemic uncertainties.

High-resolution three-dimensional imaging and analysis of rock falls in Yosemite valley, California

USGS Publications Warehouse

Stock, Gregory M.; Bawden, G.W.; Green, J.K.; Hanson, E.; Downing, G.; Collins, B.D.; Bond, S.; Leslar, M.

2011-01-01

We present quantitative analyses of recent large rock falls in Yosemite Valley, California, using integrated high-resolution imaging techniques. Rock falls commonly occur from the glacially sculpted granitic walls of Yosemite Valley, modifying this iconic landscape but also posing signifi cant potential hazards and risks. Two large rock falls occurred from the cliff beneath Glacier Point in eastern Yosemite Valley on 7 and 8 October 2008, causing minor injuries and damaging structures in a developed area. We used a combination of gigapixel photography, airborne laser scanning (ALS) data, and ground-based terrestrial laser scanning (TLS) data to characterize the rock-fall detachment surface and adjacent cliff area, quantify the rock-fall volume, evaluate the geologic structure that contributed to failure, and assess the likely failure mode. We merged the ALS and TLS data to resolve the complex, vertical to overhanging topography of the Glacier Point area in three dimensions, and integrated these data with gigapixel photographs to fully image the cliff face in high resolution. Three-dimensional analysis of repeat TLS data reveals that the cumulative failure consisted of a near-planar rock slab with a maximum length of 69.0 m, a mean thickness of 2.1 m, a detachment surface area of 2750 m2, and a volume of 5663 ?? 36 m3. Failure occurred along a surfaceparallel, vertically oriented sheeting joint in a clear example of granitic exfoliation. Stress concentration at crack tips likely propagated fractures through the partially attached slab, leading to failure. Our results demonstrate the utility of high-resolution imaging techniques for quantifying far-range (>1 km) rock falls occurring from the largely inaccessible, vertical rock faces of Yosemite Valley, and for providing highly accurate and precise data needed for rock-fall hazard assessment. ?? 2011 Geological Society of America.

Centenary of the Battle of Vimy (france, 1917): Preserving the Memory of the Great War Through 3d Recording of the Maison Blanche Souterraine

NASA Astrophysics Data System (ADS)

Murtiyoso, A.; Grussenmeyer, P.; Guillemin, S.; Prilaux, G.

2017-08-01

The Battle of Vimy Ridge was a military engagement between the Canadian Corps and the German Empire during the Great War (1914-1918). In this battle, Canadian troops fought as a single unit and won the day. It marked an important point in Canadian history as a nation. The year 2017 marks the centenary of this battle. In commemoration of this event, the Pas-de-Calais Departmental Council financed a 3D recording mission for one of the underground tunnels (souterraines) used as refuge by the Canadian soldiers several weeks prior to the battle. A combination of Terrestrial Laser Scanner (TLS) and close-range photogrammetry techniques was employed in order to document not only the souterraine, but also the various carvings and graffitis created by the soldiers on its walls. The resulting point clouds were registered to the French national geodetic system, and then meshed and textured in order to create a precise 3D model of the souterraine. In this paper, the workflow taken during the project as well as several results will be discussed. In the end, the resulting 3D model was used to create derivative products such as maps, section profiles, and also virtual visit videos. The latter helps the dissemination of the 3D information and thus aids in the preservation of the memory of the Great War for Canada.

Slope stability and rockfall assessment of volcanic tuffs using RPAS with 2-D FEM slope modelling

NASA Astrophysics Data System (ADS)

Török, Ákos; Barsi, Árpád; Bögöly, Gyula; Lovas, Tamás; Somogyi, Árpád; Görög, Péter

2018-02-01

Steep, hardly accessible cliffs of rhyolite tuff in NE Hungary are prone to rockfalls, endangering visitors of a castle. Remote sensing techniques were employed to obtain data on terrain morphology and to provide slope geometry for assessing the stability of these rock walls. A RPAS (Remotely Piloted Aircraft System) was used to collect images which were processed by Pix4D mapper (structure from motion technology) to generate a point cloud and mesh. The georeferencing was made by Global Navigation Satellite System (GNSS) with the use of seven ground control points. The obtained digital surface model (DSM) was processed (vegetation removal) and the derived digital terrain model (DTM) allowed cross sections to be drawn and a joint system to be detected. Joint and discontinuity system was also verified by field measurements. On-site tests as well as laboratory tests provided additional engineering geological data for slope modelling. Stability of cliffs was assessed by 2-D FEM (finite element method). Global analyses of cross sections show that weak intercalating tuff layers may serve as potential slip surfaces. However, at present the greatest hazard is related to planar failure along ENE-WSW joints and to wedge failure. The paper demonstrates that RPAS is a rapid and useful tool for generating a reliable terrain model of hardly accessible cliff faces. It also emphasizes the efficiency of RPAS in rockfall hazard assessment in comparison with other remote sensing techniques such as terrestrial laser scanning (TLS).

Terrestrial 3D laser scanning to track the increase in canopy height of both monocot and dicot crop species under field conditions.

PubMed

Friedli, Michael; Kirchgessner, Norbert; Grieder, Christoph; Liebisch, Frank; Mannale, Michael; Walter, Achim

2016-01-01

Plant growth is a good indicator of crop performance and can be measured by different methods and on different spatial and temporal scales. In this study, we measured the canopy height growth of maize (Zea mays), soybean (Glycine max) and wheat (Triticum aestivum) under field conditions by terrestrial laser scanning (TLS). We tested the hypotheses whether such measurements are capable to elucidate (1) differences in architecture that exist between genotypes; (2) genotypic differences between canopy height growth during the season and (3) short-term growth fluctuations (within 24 h), which could e.g. indicate responses to rapidly fluctuating environmental conditions. The canopies were scanned with a commercially available 3D laser scanner and canopy height growth over time was analyzed with a novel and simple approach using spherical targets with fixed positions during the whole season. This way, a high precision of the measurement was obtained allowing for comparison of canopy parameters (e.g. canopy height growth) at subsequent time points. Three filtering approaches for canopy height calculation from TLS were evaluated and the most suitable approach was used for the subsequent analyses. For wheat, high coefficients of determination (R(2)) of the linear regression between manually measured and TLS-derived canopy height were achieved. The temporal resolution that can be achieved with our approach depends on the scanned crop. For maize, a temporal resolution of several hours can be achieved, whereas soybean is ideally scanned only once per day, after leaves have reached their most horizontal orientation. Additionally, we could show for maize that plant architectural traits are potentially detectable with our method. The TLS approach presented here allows for measuring canopy height growth of different crops under field conditions with a high temporal resolution, depending on crop species. This method will enable advances in automated phenotyping for breeding and precision agriculture applications. In future studies, the TLS method can be readily applied to detect the effects of plant stresses such as drought, limited nutrient availability or compacted soil on different genotypes or on spatial variance in fields.

Secure Channel Establishment in Disadvantaged Networks: TLS Optimization Using Intercepting Proxies

DTIC Science & Technology

2009-08-18

50 4.1.2 Link Emulation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51 4.1.3 Openssl ...59 5 5.3 Acquired Skills . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 60 5.3.1 Openssl ...an openssl library [4], which is designed to work with differing certificate formats. 1.2.3.4 TLS Handshakes A TLS connection begins with a handshake

Point-Cloud Compression for Vehicle-Based Mobile Mapping Systems Using Portable Network Graphics

NASA Astrophysics Data System (ADS)

Kohira, K.; Masuda, H.

2017-09-01

A mobile mapping system is effective for capturing dense point-clouds of roads and roadside objects Point-clouds of urban areas, residential areas, and arterial roads are useful for maintenance of infrastructure, map creation, and automatic driving. However, the data size of point-clouds measured in large areas is enormously large. A large storage capacity is required to store such point-clouds, and heavy loads will be taken on network if point-clouds are transferred through the network. Therefore, it is desirable to reduce data sizes of point-clouds without deterioration of quality. In this research, we propose a novel point-cloud compression method for vehicle-based mobile mapping systems. In our compression method, point-clouds are mapped onto 2D pixels using GPS time and the parameters of the laser scanner. Then, the images are encoded in the Portable Networking Graphics (PNG) format and compressed using the PNG algorithm. In our experiments, our method could efficiently compress point-clouds without deteriorating the quality.

The registration of non-cooperative moving targets laser point cloud in different view point

NASA Astrophysics Data System (ADS)

Wang, Shuai; Sun, Huayan; Guo, Huichao

2018-01-01

Non-cooperative moving target multi-view cloud registration is the key technology of 3D reconstruction of laser threedimension imaging. The main problem is that the density changes greatly and noise exists under different acquisition conditions of point cloud. In this paper, firstly, the feature descriptor is used to find the most similar point cloud, and then based on the registration algorithm of region segmentation, the geometric structure of the point is extracted by the geometric similarity between point and point, The point cloud is divided into regions based on spectral clustering, feature descriptors are created for each region, searching to find the most similar regions in the most similar point of view cloud, and then aligning the pair of point clouds by aligning their minimum bounding boxes. Repeat the above steps again until registration of all point clouds is completed. Experiments show that this method is insensitive to the density of point clouds and performs well on the noise of laser three-dimension imaging.

An Iterative Closest Points Algorithm for Registration of 3D Laser Scanner Point Clouds with Geometric Features.

PubMed

He, Ying; Liang, Bin; Yang, Jun; Li, Shunzhi; He, Jin

2017-08-11

The Iterative Closest Points (ICP) algorithm is the mainstream algorithm used in the process of accurate registration of 3D point cloud data. The algorithm requires a proper initial value and the approximate registration of two point clouds to prevent the algorithm from falling into local extremes, but in the actual point cloud matching process, it is difficult to ensure compliance with this requirement. In this paper, we proposed the ICP algorithm based on point cloud features (GF-ICP). This method uses the geometrical features of the point cloud to be registered, such as curvature, surface normal and point cloud density, to search for the correspondence relationships between two point clouds and introduces the geometric features into the error function to realize the accurate registration of two point clouds. The experimental results showed that the algorithm can improve the convergence speed and the interval of convergence without setting a proper initial value.

An Iterative Closest Points Algorithm for Registration of 3D Laser Scanner Point Clouds with Geometric Features

PubMed Central

Liang, Bin; Yang, Jun; Li, Shunzhi; He, Jin

2017-01-01

The Iterative Closest Points (ICP) algorithm is the mainstream algorithm used in the process of accurate registration of 3D point cloud data. The algorithm requires a proper initial value and the approximate registration of two point clouds to prevent the algorithm from falling into local extremes, but in the actual point cloud matching process, it is difficult to ensure compliance with this requirement. In this paper, we proposed the ICP algorithm based on point cloud features (GF-ICP). This method uses the geometrical features of the point cloud to be registered, such as curvature, surface normal and point cloud density, to search for the correspondence relationships between two point clouds and introduces the geometric features into the error function to realize the accurate registration of two point clouds. The experimental results showed that the algorithm can improve the convergence speed and the interval of convergence without setting a proper initial value. PMID:28800096

Plot-scale soil loss estimation with laser scanning and photogrammetry methods

NASA Astrophysics Data System (ADS)

Szabó, Boglárka; Szabó, Judit; Jakab, Gergely; Centeri, Csaba; Szalai, Zoltán; Somogyi, Árpád; Barsi, Árpád

2017-04-01

Structure from Motion (SfM) is an automatic feature-matching algorithm, which nowadays is widely used tool in photogrammetry for geoscience applications. SfM method and parallel terrestrial laser scanning measurements are widespread and they can be well accomplished for quantitative soil erosion measurements as well. Therefore, our main scope was soil erosion characterization quantitatively and qualitatively, 3D visualization and morphological characterization of soil-erosion-dynamics. During the rainfall simulation, the surface had been measured and compared before and after the rainfall event by photogrammetry (SfM - Structure from Motion) and laser scanning (TLS - Terrestrial Laser Scanning) methods. The validation of the given results had been done by the caught runoff and the measured soil-loss value. During the laboratory experiment, the applied rainfall had 40 mm/h rainfall intensity. The size of the plot was 0.5 m2. The laser scanning had been implemented with Faro Focus 3D 120 S type equipment, while the SfM shooting had been carried out by 2 piece SJCAM SJ4000+ type, 12 MP resolution and 4K action cams. The photo-reconstruction had been made with Agisoft Photoscan software, while evaluation of the resulted point-cloud from laser scanning and photogrammetry had been implemented partly in CloudCompare and partly in ArcGIS. The resulted models and the calculated surface changes didn't prove to be suitable for estimating soil-loss, only for the detection of changes in the vertical surface. The laser scanning resulted a quite precise surface model, while the SfM method is affected by errors at the surface model due to other factors. The method needs more adequate technical laboratory preparation.

Multiple two-polymerase mechanisms in mammalian translesion DNA synthesis.

PubMed

Livneh, Zvi; Ziv, Omer; Shachar, Sigal

2010-02-15

The encounter of replication forks with DNA lesions may lead to fork arrest and/or the formation of single-stranded gaps. A major strategy to cope with these replication irregularities is translesion DNA synthesis (TLS), in which specialized error-prone DNA polymerases bypass the blocking lesions. Recent studies suggest that TLS across a particular DNA lesion may involve as many as four different TLS polymerases, acting in two-polymerase reactions in which insertion by a particular polymerase is followed by extension by another polymerase. Insertion determines the accuracy and mutagenic specificity of the TLS reaction, and is carried out by one of several polymerases such as poleta, polkappa or poliota. In contrast, extension is carried out primarily by polzeta. In cells from XPV patients, which are deficient in TLS across cyclobutane pyrimidine dimers (CPD) due to a deficiency in poleta, TLS is carried out by at least two backup reactions each involving two polymerases: One reaction involves polkappa and polzeta, and the other poliota and polzeta. These mechanisms may also assist poleta in normal cells under an excessive amount of UV lesions.

Forest Resource Measurements by Combination of Terrestrial Laser Scanning and Drone Use

NASA Astrophysics Data System (ADS)

Cheung, K.; Katoh, M.; Horisawa, M.

2017-10-01

Using terrestrial laser scanning (TLS), forest attributes such as diameter at breast height (DBH) and tree location can be measured accurately. However, due to low penetration of laser pulses to tree tops, tree height measurements are typically underestimated. In this study, data acquired by TLS and drones were combined; DBH and tree locations were determined by TLS, and tree heights were measured by drone use. The average tree height error and root mean square error (RMSE) of tree height were 0.8 and 1.2 m, respectively, for the combined method, and -0.4 and 1.7 m using TLS alone. The tree height difference was compared using airborne laser scanning (ALS). Furthermore, a method to acquire 100 % tree detection rate based on TLS data is suggested in this study.

Tertiary lymphoid structures in cancer and beyond.

PubMed

Dieu-Nosjean, Marie-Caroline; Goc, Jérémy; Giraldo, Nicolas A; Sautès-Fridman, Catherine; Fridman, Wolf Herman

2014-11-01

Tertiary lymphoid structures (TLS) are ectopic lymphoid formations found in inflamed, infected, or tumoral tissues. They exhibit all the characteristics of structures in the lymph nodes (LN) associated with the generation of an adaptive immune response, including a T cell zone with mature dendritic cells (DC), a germinal center with follicular dendritic cells (FDC) and proliferating B cells, and high endothelial venules (HEV). In this review, we discuss evidence for the roles of TLS in chronic infection, autoimmunity, and cancer, and address the question of whether TLS present beneficial or deleterious effects in these contexts. We examine the relationship between TLS in tumors and patient prognosis, and discuss the potential role of TLS in building and/or maintaining local immune responses and how this understanding may guide therapeutic interventions. Copyright © 2014 Elsevier Ltd. All rights reserved.

Coastal Applications of the Canopy Biomass Lidar (CBL)

NASA Astrophysics Data System (ADS)

Paynter, I.; Saenz, E.; Peri, F.; Schaaf, C.; Wang, Z.; Erb, A.; Yang, Y.; Rouhani, S.; Liu, Y.; Yang, X.; Chen, R. F.; Oktay, S.; Gontz, A. M.; Douglas, E. M.; Kim, J.; Sun, Q.; Strahler, A. H.; Li, Z.; van Aardt, J. A.; Kelbe, D.; Romanczyk, P.; Cawse-Nicholson, K.

2013-12-01

Airborne discrete and full waveform lidars have increasingly been utilized to augment multispectral and hyperspectral imaging of coastal ecosystems. While these data provide important landscape assessments of the shore and nearshore environment, they often lack the frequency that is really needed to monitor complex vegetative systems such as salt marshes and mangroves and provide rapid evaluations in the aftermath of severe storms. One solution is to augment the sparse airborne and satellite acquisitions with terrestrial laser scanning (TLS) information. However, most institutions with fine resolution discrete or full waveform TLS instruments are unwilling to risk these expensive (and often heavy) lidar in marine or estuarine environments. The Canopy Biomass Lidar (CBL) is an inexpensive, highly portable, fast-scanning, time-of-flight, TLS instrument, originally conceived by the Katholieke Universiteit Leuven (KUL) and refined by the Rochester Institute of Technology (RIT). Two new CBLs, constructed by the University of Massachusetts Boston (UMB), have been successfully deployed in deciduous and conifer forests at Long Term Ecological Research (LTER) and National Ecological Observatory Network (NEON) sites in Massachusetts (Harvard Forest) and California (Sierra National Forest), and in eucalypt forests at long-term and Terrestrial Ecosystem Research Network (TERN) sites in Queensland, Australia. Both the UMB and RIT CBLs have also been deployed in savanna systems at the San Joaquin Rangeland (and NEON site) in California. The UMB CBLs are now being deployed in salt marsh systems in Massachusetts with plans underway to deploy them in mangrove forests later in the year. In particular, they are being used to characterize the water facing edge of saltmarsh at UMB's Nantucket Island field station and remnant salt marshes on the highly urbanized Neponset estuary draining into Boston Harbor. While CBL's 905nm nearIR wavelength is of little use in nearshore inundated systems (such as eel grass and kelp), it is excellent for characterizing 3D foliage structure via multiple scan point clouds. The system is light and the scanning is rapid enough (30seconds for a full hemispherical scan) to be deployed manually or in small watercraft. The portability also means that it can be used frequently to monitor vegetation dynamics throughout the growing season and assess marsh damage and erosion after severe storms. While airborne lidar and hyperspectral data and high resolution satellite imagery (and indeed even the more frequently available coarser resolution multispectral satellite imagery from the newly launched Landsat 8) will provide the most expansive views of such environments, tools such as the CBL can provide important ancillary information to augment the remote sensing data and provide rapid and fine scale shore level details to improve modeling and monitoring of these coastal vegetation ecosystems.

Safe Configuration of TLS Connections

DTIC Science & Technology

2013-10-16

users. All of these points together lead to unprotected communications that are assumed to be protected. What makes this even worse is that not only...Architecture (SOA) is a software engineering technology that is increasingly used in many important military and civilian systems. The features that make ...SOA appealing, like loose coupling, dynamism and composition-oriented system construction, make securing SOA systems complicated. These features ease

Impacts of the School Social Unit on Teacher Authority during Work Redesign.

ERIC Educational Resources Information Center

Hart, Ann Weaver

1990-01-01

Work redesign to facilitate teacher empowerment was studied in a year-long comparative case study in two junior-high schools implementing a career-ladder program. Journals of 6 teacher leaders (TLs), 23 teachers, and 3 teacher-specialists; TLs' and novice teachers' midyear surveys; and 61 classroom observations by TLs and principals were analyzed.…

Importance of Laser Scanning Resolution in the Process of Recreating the Architectural Details of Historical Buildings

NASA Astrophysics Data System (ADS)

Pawłowicz, Joanna A.

2017-10-01

The TLS method (Terrestrial Laser Scanning) may replace the traditional building survey methods, e.g. those requiring the use measuring tapes or range finders. This technology allows for collecting digital data in the form of a point cloud, which can be used to create a 3D model of a building. In addition, it allows for collecting data with an incredible precision, which translates into the possibility to reproduce all architectural features of a building. This data is applied in reverse engineering to create a 3D model of an object existing in a physical space. This study presents the results of a research carried out using a point cloud to recreate the architectural features of a historical building with the application of reverse engineering. The research was conducted on a two-storey residential building with a basement and an attic. Out of the building’s façade sticks a veranda featuring a complicated, wooden structure. The measurements were taken at the medium and the highest resolution using a ScanStation C10 laser scanner by Leica. The data obtained was processed using specialist software, which allowed for the application of reverse engineering, especially for reproducing the sculpted details of the veranda. Following digitization, all redundant data was removed from the point cloud and the cloud was subjected to modelling. For testing purposes, a selected part of the veranda was modelled by means of two methods: surface matching and Triangulated Irregular Network. Both modelling methods were applied in the case of data collected at medium and the highest resolution. Creating a model based on data obtained at medium resolution, both by means of the surface matching and the TIN method, does not allow for a precise recreation of architectural details. The study presents certain sculpted elements recreated based on the highest resolution data with superimposed TIN juxtaposed against a digital image. The resulting model is very precise. Creating good models requires highly accurate field data. It is important to properly choose the distance between the measuring station and the measured object in order to ensure that the angles of incidence (horizontal and vertical) of the laser beam are as straight as possible. The model created based on medium resolution offers very poor quality of details, i.e. only the bigger, basic elements of each detail are clearly visible, while the smaller ones are blurred. This is why in order to obtain data sufficient to reproduce architectural details laser scanning should be performed at the highest resolution. In addition, modelling by means of the surface matching method should be avoided - a better idea is to use the TIN method. In addition to providing a realistically-looking visualization, the method has one more important advantage - it is 4 times faster than the surface matching method.

Registration algorithm of point clouds based on multiscale normal features

NASA Astrophysics Data System (ADS)

Lu, Jun; Peng, Zhongtao; Su, Hang; Xia, GuiHua

2015-01-01

The point cloud registration technology for obtaining a three-dimensional digital model is widely applied in many areas. To improve the accuracy and speed of point cloud registration, a registration method based on multiscale normal vectors is proposed. The proposed registration method mainly includes three parts: the selection of key points, the calculation of feature descriptors, and the determining and optimization of correspondences. First, key points are selected from the point cloud based on the changes of magnitude of multiscale curvatures obtained by using principal components analysis. Then the feature descriptor of each key point is proposed, which consists of 21 elements based on multiscale normal vectors and curvatures. The correspondences in a pair of two point clouds are determined according to the descriptor's similarity of key points in the source point cloud and target point cloud. Correspondences are optimized by using a random sampling consistency algorithm and clustering technology. Finally, singular value decomposition is applied to optimized correspondences so that the rigid transformation matrix between two point clouds is obtained. Experimental results show that the proposed point cloud registration algorithm has a faster calculation speed, higher registration accuracy, and better antinoise performance.

Medium frequency propagation characteristics of different transmission lines in an underground coal mine

PubMed Central

Li, Jingcheng; Waynert, Joseph A.; Whisner, Bruce G.

2015-01-01

A medium frequency (MF) communication system operating in an underground coal mine couples its signals to a long conductor, which acts as an MF transmission line (TL) in a tunnel to permit communications among transceivers along the line. The TL is generally the longest signal path for the system, and its propagation characteristics will have a major impact on the performance of the MF communication system. In this study, the propagation characteristics of three types of MF TLs in two layouts—on the roof and on the floor of a coal mine tunnel—were obtained in an effort to understand the propagation characteristics of different TLs in different locations. The study confirmed a low MF signal loss on all of these TLs. The study also found that the TLs in different layouts had substantially different propagation characteristics. The propagation characteristics of these different TLs in different layouts are presented in the paper. PMID:26203349

The benefit of 3D laser scanning technology in the generation and calibration of FEM models for health assessment of concrete structures.

PubMed

Yang, Hao; Xu, Xiangyang; Neumann, Ingo

2014-11-19

Terrestrial laser scanning technology (TLS) is a new technique for quickly getting three-dimensional information. In this paper we research the health assessment of concrete structures with a Finite Element Method (FEM) model based on TLS. The goal focuses on the benefits of 3D TLS in the generation and calibration of FEM models, in order to build a convenient, efficient and intelligent model which can be widely used for the detection and assessment of bridges, buildings, subways and other objects. After comparing the finite element simulation with surface-based measurement data from TLS, the FEM model is determined to be acceptable with an error of less than 5%. The benefit of TLS lies mainly in the possibility of a surface-based validation of results predicted by the FEM model.

Miniature Tunable Laser Spectrometers for Quantifying Atmospheric Trace Gases, Water Resources, Earth Back-Contamination, and In Situ Resource Utilization

NASA Technical Reports Server (NTRS)

Webster, Chris; Blacksberg, Jordana; Flesch, Greg; Keymeulen, Didier; Christensen, Lance; Forouhar, Siamak

2012-01-01

The Tunable Laser Spectrometers (TLS) technique has seen wide applicability in gas measurement and analysis for atmospheric analysis, industrial, commercial and health monitoring and space applications. In Earth science using balloons and aircraft over 2 decades, several groups (JPL, NASA Langley & Ames, NOAA, Harvard U., etc) have demonstrated the technique for ozone hole studies, lab kinetics measurements, cloud physics and transport, climate change in the ice record. The recent availability of high-power (mW) room temperature lasers (TDL, IC, QC) has enabled miniaturized, high-sensitivity spectrometers for industry and space (1) Mars, Titan, Venus, Saturn, Moon (2) Commercial isotope ratio spectrometers are replacing bulkier, complex isotope ratio mass spectrometers.

Development of Waterfall Cliff Face: An Implication from Multitemporal High-definition Topographic Data

NASA Astrophysics Data System (ADS)

Hayakawa, Y. S.; Obanawa, H.

2015-12-01

Bedrock knickpoints (waterfalls) often act as erosional front in bedrock rivers, whose geomorphological processes are various. In waterfalls with vertical cliffs, both fluvial erosion and mass movement are feasible to form the landscape. Although morphological changes of such steep cliffs are sometimes visually observed, quantitative and precise measurements of their spatiotemporal distribution have been limited due to poor accessibility to such cliffs. For the clarification of geomorphological processes in such cliffs, multi-temporal mapping of the cliff face at a high resolution can be advantaged by short-range remote sensing approaches. Here we carry out multi-temporal terrestrial laser scanning (TLS), as well as structure-from-motion multi-view stereo (SfM-MVS) photogrammetry based on unmanned aerial system (UAS) for accurate topographic mapping of cliffs around a waterfall. The study site is Kegon Falls in central Japan, having a vertical drop of surface water from top of its overhanging cliff and groundwater outflows from its lower portions. The bedrock consists of alternate layers of jointed andesite lava and conglomerates. The latest major rockfall in 1986 caused approximately 8-m recession of the waterfall lip. Three-dimensional changes of the rock surface were detected by multi-temporal measurements by TLS over years, showing the portions of small rockfalls and surface lowering in the bedrock. Erosion was frequently observed in relatively weak the conglomerates layer, whereas small rockfalls were often found in the andesite layers. Wider areas of the waterfall and cliff were also measured by UAS-based SfM-MVS photogrammetry, improving the mapping quality of the cliff morphology. Point clouds are also projected on a vertical plane to generate a digital elevation model (DEM), and cross-sectional profiles extracted from the DEM indicate the presence of a distinct, 5-10-m deep depression in the cliff face. This appears to have been formed by freeze-thaw and/or wet-dry weathering following the recession in 1986. The long-term development of the waterfall cliff face is then discussed comprising various processes of rockfalls, water pressure and weathering.

Hot Spots on the Web for Teacher Librarians: A Selection of Recommended Web Sites for TLs To Visit.

ERIC Educational Resources Information Center

1996

Six papers review and recommend sites on the Web as resources for teacher librarians include: "Just Do It: A Guide to Getting Out There and Doing It Yourself" (Catherine Ryan); "A Selection of Recommended Web Sites for TLs To Visit" (Karen Bonanno); "A Selection of Recommended Web Sites for TLs To Visit" (Sandra…

Incidence of chemotherapy-related tumour lysis syndrome at Kenyatta National Hospital, Nairobi.

PubMed

Busakhala, W; Joshi, M D; Abinya, N O; Amayo, A; Abwao, H O

2007-03-01

To estimate the magnitude of laboratory defined Tumour Lysis Syndrome (TLS) at Kenyatta National Hospital (KNH), identify its pattern of presentation, resolution, and determine the biochemical outcome of affected patients. Prospective patient-treatment cohort study. Kenyatta National Referral and Teaching Hospital, between November 2004 and April 2005. One hundred and forty two patients receiving first course chemotherapy. Laboratory defined Tumour Lysis Syndrome (TLS). One hundred and eleven patients completed the study protocol. Forty two patients (37.8%) developed TLS. The incidence in haematological malignancies was 75.5% while in non-haematological malignancies was 3.6%. Hyperphosphataemia and hyperkalaemia were the most consistent diagnostic parameters while hyperuricaemia occurred in only one patient. No patient developed hypocalcaemia. Ninety five percent of patients developed TLS within the first three days of receiving chemotherapy while 55% resolved in the first week. Two TLS case mortalities occurred. The incidence of TLS in this cohort study was 38%, and was highest among haematological malignancies. No cases occurred in breast cancer patients. Majority of the cases were diagnosed on the basis of increase in serum phosphate and potassium; uric acid did not rise predominantly due to prophylactic uricosuric therapy. A majority (95%) developed within three days of commencing chemotherapy.

In vivo evidence for translesion synthesis by the replicative DNA polymerase δ

PubMed Central

Hirota, Kouji; Tsuda, Masataka; Mohiuddin; Tsurimoto, Toshiki; Cohen, Isadora S.; Livneh, Zvi; Kobayashi, Kaori; Narita, Takeo; Nishihara, Kana; Murai, Junko; Iwai, Shigenori; Guilbaud, Guillaume; Sale, Julian E.; Takeda, Shunichi

2016-01-01

The intolerance of DNA polymerase δ (Polδ) to incorrect base pairing contributes to its extremely high accuracy during replication, but is believed to inhibit translesion synthesis (TLS). However, chicken DT40 cells lacking the POLD3 subunit of Polδ are deficient in TLS. Previous genetic and biochemical analysis showed that POLD3 may promote lesion bypass by Polδ itself independently of the translesion polymerase Polζ of which POLD3 is also a subunit. To test this hypothesis, we have inactivated Polδ proofreading in pold3 cells. This significantly restored TLS in pold3 mutants, enhancing dA incorporation opposite abasic sites. Purified proofreading-deficient human Polδ holoenzyme performs TLS of abasic sites in vitro much more efficiently than the wild type enzyme, with over 90% of TLS events resulting in dA incorporation. Furthermore, proofreading deficiency enhances the capability of Polδ to continue DNA synthesis over UV lesions both in vivo and in vitro. These data support Polδ contributing to TLS in vivo and suggest that the mutagenesis resulting from loss of Polδ proofreading activity may in part be explained by enhanced lesion bypass. PMID:27185888

A shape-based segmentation method for mobile laser scanning point clouds

NASA Astrophysics Data System (ADS)

Yang, Bisheng; Dong, Zhen

2013-07-01

Segmentation of mobile laser point clouds of urban scenes into objects is an important step for post-processing (e.g., interpretation) of point clouds. Point clouds of urban scenes contain numerous objects with significant size variability, complex and incomplete structures, and holes or variable point densities, raising great challenges for the segmentation of mobile laser point clouds. This paper addresses these challenges by proposing a shape-based segmentation method. The proposed method first calculates the optimal neighborhood size of each point to derive the geometric features associated with it, and then classifies the point clouds according to geometric features using support vector machines (SVMs). Second, a set of rules are defined to segment the classified point clouds, and a similarity criterion for segments is proposed to overcome over-segmentation. Finally, the segmentation output is merged based on topological connectivity into a meaningful geometrical abstraction. The proposed method has been tested on point clouds of two urban scenes obtained by different mobile laser scanners. The results show that the proposed method segments large-scale mobile laser point clouds with good accuracy and computationally effective time cost, and that it segments pole-like objects particularly well.

Relaxation dynamics of a driven two-level system coupled to a Bose-Einstein condensate: application to quantum dot-dipolar exciton gas hybrid systems.

PubMed

Kovalev, Vadim M; Tse, Wang-Kong

2017-11-22

We develop a microscopic theory for the relaxation dynamics of an optically pumped two-level system (TLS) coupled to a bath of weakly interacting Bose gas. Using Keldysh formalism and diagrammatic perturbation theory, expressions for the relaxation times of the TLS Rabi oscillations are derived when the boson bath is in the normal state and the Bose-Einstein condensate (BEC) state. We apply our general theory to consider an irradiated quantum dot coupled with a boson bath consisting of a two-dimensional dipolar exciton gas. When the bath is in the BEC regime, relaxation of the Rabi oscillations is due to both condensate and non-condensate fractions of the bath bosons for weak TLS-light coupling and pre dominantly due to the non-condensate fraction for strong TLS-light coupling. Our theory also shows that a phase transition of the bath from the normal to the BEC state strongly influences the relaxation rate of the TLS Rabi oscillations. The TLS relaxation rate is approximately independent of the pump field frequency and monotonically dependent on the field strength when the bath is in the low-temperature regime of the normal phase. Phase transition of the dipolar exciton gas leads to a non-monotonic dependence of the TLS relaxation rate on both the pump field frequency and field strength, providing a characteristic signature for the detection of BEC phase transition of the coupled dipolar exciton gas.

Next-Generation Terrestrial Laser Scanning to Measure Forest Canopy Structure

NASA Astrophysics Data System (ADS)

Danson, M.

2015-12-01

Terrestrial laser scanners (TLS) are now capable of semi-automatic reconstruction of the structure of complete trees or forest stands and have the potential to provide detailed information on tree architecture and foliage biophysical properties. The trends for the next generation of TLS are towards higher resolution, faster scanning and full-waveform data recording, with mobile, multispectral laser devices. The convergence of these technological advances in the next generation of TLS will allow the production of information for forest and woodland mapping and monitoring that is far more detailed, more accurate, and more comprehensive than any available today. This paper describes recent scientific advances in the application of TLS for characterising forest and woodland areas, drawing on the authors' development of the Salford Advanced Laser Canopy Analyser (SALCA), the activities of the Terrestrial Laser Scanner International Interest Group (TLSIIG), and recent advances in laser scanner technology around the world. The key findings illustrated in the paper are that (i) a complete understanding of system measurement characteristics is required for quantitative analysis of TLS data, (ii) full-waveform data recording is required for extraction of forest biophysical variables and, (iii) multi-wavelength systems provide additional spectral information that is essential for classifying different vegetation components. The paper uses a range of recent experimental TLS measurements to support these findings, and sets out a vision for new research to develop an information-rich future-forest information system, populated by mobile autonomous multispectral TLS devices.

Smart-Geology for the World's largest fossil oyster reef

NASA Astrophysics Data System (ADS)

Dorninger, Peter; Nothegger, Clemens; Djuricic, Ana; Rasztovits, Sascha; Harzhauser, Mathias

2014-05-01

The geo-edutainment park "Fossilienwelt Weinviertel" at Stetten in Lower Austria exposes the world's largest fossil oyster biostrome. In the past decade, significant progress has been made in 3D digitizing sensor technology. To cope with the high amount of data, processing methods have been automated to a high degree. Consequently, we formulated the hypothesis that appropriate application of state-of-the-art 3D digitizing, data processing, and visualization technologies allows for a significant automation in paleontological prospection, making an evaluation of huge areas commercially feasible in both time and costs. We call the necessary processing steps "Smart Geology", being characterized by automation and large volumes of data. The Smart Geology project (FWF P 25883-N29) investigates three topics, 3D digitizing, automated geological and paleontological analysis and interpretation and finally investigating the applicability of smart devices for on-site accessibility of project data in order to support the two scientific hypotheses concerning the emerging process of the shell bed, i.e. was it formed by a tsunami or a major storm, and does it preserve pre- and post-event features. This contribution concentrates on the innovative and sophisticated 3D documentation and visualization processes being applied to virtualise approximately 15.000 fossil oysters at the approximately 25 by 17 m accessible shell bad. We decided to use a Terrestrial Laserscanner (TLS) for the determination of the geometrical 3D structures. The TLS achieves about 2 mm single point measurement accuracy. The scanning campaign provides a "raw" point cloud of approximately 1 bio. points at the respective area. Due to the scanning configuration used, the occurrence of occluded ares is minimized hence the full 3D structure of this unique site can be modelled. In addition, approximately 300 photos were taken with a nominal resolution of 0.6 mm per pixel. Sophisticated artificial lightning (close to studio conditions) is used in order to minimize the occurrence of shadows. The resulting datasets can be characterized as follows: A virtual 3D representation with a nominal resolution of 1 mm, a local accuracy of 1 mm (after noise minimization), a global accuracy of < 3 mm with respect to a network of reference points and integrated colour information with a resolution of 0.6 mm per pixel. In order to support both interactive and automated geological and palaeontologcial research questions of the entire site in an economically feasible manner, various data reduction and representation methods were evaluated. Within this contribution we will present and discuss results of 2D image representations, 3D documentation models, and combinations, i.e. textured models. Effects of data reduction (i.e. to make them more convenient for the analysis of large areas) and data acquisition configuration (e.g. the necessity for high-resolution data acquisition) as well as the applicability of the data for advanced visualization purposes (e.g. 3D real-time rendering; foundation for augmented- reality based applications) will be discussed.

LSAH: a fast and efficient local surface feature for point cloud registration

NASA Astrophysics Data System (ADS)

Lu, Rongrong; Zhu, Feng; Wu, Qingxiao; Kong, Yanzi

2018-04-01

Point cloud registration is a fundamental task in high level three dimensional applications. Noise, uneven point density and varying point cloud resolutions are the three main challenges for point cloud registration. In this paper, we design a robust and compact local surface descriptor called Local Surface Angles Histogram (LSAH) and propose an effectively coarse to fine algorithm for point cloud registration. The LSAH descriptor is formed by concatenating five normalized sub-histograms into one histogram. The five sub-histograms are created by accumulating a different type of angle from a local surface patch respectively. The experimental results show that our LSAH is more robust to uneven point density and point cloud resolutions than four state-of-the-art local descriptors in terms of feature matching. Moreover, we tested our LSAH based coarse to fine algorithm for point cloud registration. The experimental results demonstrate that our algorithm is robust and efficient as well.

Rockfall magnitude-frequency estimation: how data acquistion strategies influence methodological results

NASA Astrophysics Data System (ADS)

Guerin, Antoine; Abellán, Antonio; Jesús Royán, Manuel; Carrea, Dario; Vilaplana, Joan Manuel; Jaboyedoff, Michel

2014-05-01

The modelling of rock cliff erosion rates through rockfall magnitude-frequency is a well-known technique extensively carried out before by many authors (e.g. Barlow et al., 2012; Guerin et al., 2014). These studies show how the relation between frequency (F) and magnitude (M) of rockfalls is well fitted by a negative power law [F = a*M ^ (-b)], the value of its parameters varying considerably according to differences in type of material, structural settings, climate, etc. Nevertheless, little insight is given into how methodological and instrumental issues influence power law, typically into how data acquisition accuracy, minimum level of detection and spatio-temporal resolution influence this relationship. Extensive Terrestrial Laser Scanner (TLS) campaigns were carried out during more than six years (from Nov.2007 to Dec.2013) in order to monitor a semi-circular rock wall of 150 m width and 25 m height, situated in Puigcercós (Pallars Jussà, Catalonia, Spain). The analysed cliff represents the main outcrop of a landslide that took place in 1881, the scarp being affected by a high number of rockfalls per year (Royan et al., 2013). The spatial-temporal rockfall frequency is determined by comparison of very dense point clouds (about 500 points/m2) acquired in 22 fieldwork campaigns at different dates. The TLS data processing (data filtering, alignment, georeferencing, meshing and comparison) was carried out with the ImInspect module of Polyworks software. The analysis of the magnitude-frequency parameters was carried out for each period of comparison using a script specifically developed in Matlab software. We used the image processing toolbox aiming to extract rockfall areas (number of pixels) and centroids for each event. We carried out an exploratory analysis in order to investigate how certain parameters linked to data acquisition -spatial and temporal resolution, level of detection, etc.- influence the complementary cumulative distributions of the rockfall frequency. Furthermore, for each observation period, we have examined if there exists a correlation between the rockfall characteristics (magnitude and frequencies) and the associated weather conditions (precipitations, temperature, wind). In this work we demonstrated how the acquisition strategies play a significant role on the exponent value of magnitude-frequency cumulative distributions. Moreover, the level of detection influenced the detected number of small rockfalls and therefore, the censoring effect linked to the presence of underrepresented volumes. Nevertheless, no clear correlation has been made regarding atmospheric conditions yet; a great quantity of parameters should be taken into account in order to clearly identify a trend.

DNA damage bypass operates in the S and G2 phases of the cell cycle and exhibits differential mutagenicity

PubMed Central

Diamant, Noam; Hendel, Ayal; Vered, Ilan; Carell, Thomas; Reißner, Thomas; de Wind, Niels; Geacinov, Nicholas; Livneh, Zvi

2012-01-01

Translesion DNA synthesis (TLS) employs low-fidelity DNA polymerases to bypass replication-blocking lesions, and being associated with chromosomal replication was presumed to occur in the S phase of the cell cycle. Using immunostaining with anti-replication protein A antibodies, we show that in UV-irradiated mammalian cells, chromosomal single-stranded gaps formed in S phase during replication persist into the G2 phase of the cell cycle, where their repair is completed depending on DNA polymerase ζ and Rev1. Analysis of TLS using a high-resolution gapped-plasmid assay system in cell populations enriched by centrifugal elutriation for specific cell cycle phases showed that TLS operates both in S and G2. Moreover, the mutagenic specificity of TLS in G2 was different from S, and in some cases overall mutation frequency was higher. These results suggest that TLS repair of single-stranded gaps caused by DNA lesions can lag behind chromosomal replication, is separable from it, and occurs both in the S and G2 phases of the cell cycle. Such a mechanism may function to maintain efficient replication, which can progress despite the presence of DNA lesions, with TLS lagging behind and patching regions of discontinuity. PMID:21908406

A Genetic Selection for dinB Mutants Reveals an Interaction between DNA Polymerase IV and the Replicative Polymerase That Is Required for Translesion Synthesis.

PubMed

Scotland, Michelle K; Heltzel, Justin M H; Kath, James E; Choi, Jung-Suk; Berdis, Anthony J; Loparo, Joseph J; Sutton, Mark D

2015-09-01

Translesion DNA synthesis (TLS) by specialized DNA polymerases (Pols) is a conserved mechanism for tolerating replication blocking DNA lesions. The actions of TLS Pols are managed in part by ring-shaped sliding clamp proteins. In addition to catalyzing TLS, altered expression of TLS Pols impedes cellular growth. The goal of this study was to define the relationship between the physiological function of Escherichia coli Pol IV in TLS and its ability to impede growth when overproduced. To this end, 13 novel Pol IV mutants were identified that failed to impede growth. Subsequent analysis of these mutants suggest that overproduced levels of Pol IV inhibit E. coli growth by gaining inappropriate access to the replication fork via a Pol III-Pol IV switch that is mechanistically similar to that used under physiological conditions to coordinate Pol IV-catalyzed TLS with Pol III-catalyzed replication. Detailed analysis of one mutant, Pol IV-T120P, and two previously described Pol IV mutants impaired for interaction with either the rim (Pol IVR) or the cleft (Pol IVC) of the β sliding clamp revealed novel insights into the mechanism of the Pol III-Pol IV switch. Specifically, Pol IV-T120P retained complete catalytic activity in vitro but, like Pol IVR and Pol IVC, failed to support Pol IV TLS function in vivo. Notably, the T120P mutation abrogated a biochemical interaction of Pol IV with Pol III that was required for Pol III-Pol IV switching. Taken together, these results support a model in which Pol III-Pol IV switching involves interaction of Pol IV with Pol III, as well as the β clamp rim and cleft. Moreover, they provide strong support for the view that Pol III-Pol IV switching represents a vitally important mechanism for regulating TLS in vivo by managing access of Pol IV to the DNA.

Canopy structural complexity influences forest canopy reflectance: linking terrestrial lidar with Landsat observations

NASA Astrophysics Data System (ADS)

Hardiman, B. S.; Atkins, J.; Dahlin, K.; Fahey, R. T.; Gough, C. M.

2016-12-01

Canopy physical structure - leaf quantity and arrangement - strongly affects light interception and distribution. As such, canopy physical structure is a key driver of forest carbon (C) dynamics. Terrestrial lidar systems (TLS) provide spatially explicit, quantitative characterizations of canopy physical structure at scales commensurate with plot-scale C cycling processes. As an example, previous TLS-based studies established that light use efficiency is positively correlated with canopy physical structure, influencing the trajectory of net primary production throughout forest development. Linking TLS measurements of canopy structure to multispectral satellite observations of forest canopies may enable scaling of ecosystem C cycling processes from leaves to continents. We will report on our study relating a suite of canopy structural metrics to well-established remotely sensed measurements (NDVI, EVI, albedo, tasseled cap indices, etc.) which are indicative of important forest characteristics (leaf area, canopy nitrogen, light interception, etc.). We used Landsat data, which provides observations at 30m resolution, a scale comparable to that of TLS. TLS data were acquired during 2009-2016 from forest sites throughout Eastern North America, comprised primarily of NEON and Ameriflux sites. Canopy physical structure data were compared with contemporaneous growing-season Landsat data. Metrics of canopy physical structure are expected to covary with forest composition and dominant PFT, likely influencing interaction strength between TLS and Landsat canopy metrics. More structurally complex canopies (those with more heterogeneous distributions of leaf area) are expected to have lower albedo, suggesting greater canopy light absorption (higher fAPAR) than simpler canopies. We expect that vegetation indices (NDVI, EVI) will increase with TLS metrics of spatial heterogeneity, and not simply quantity, of leaves, supporting our hypothesis that canopy light absorption is dependent on both leaf quantity and arrangement. Relating satellite observations of canopy properties to TLS metrics of canopy physical structure represents an important advance for modelling canopy energy balance and forest C cycling processes at large spatial scales.

Comparing terrestrial laser scanning and unmanned aerial vehicle structure from motion to assess top of canopy structure in tropical forests

PubMed Central

Bartholomeus, Harm

2018-01-01

Terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAVs) equipped with digital cameras have attracted much attention from the forestry community as potential tools for forest inventories and forest monitoring. This research fills a knowledge gap about the viability and dissimilarities of using these technologies for measuring the top of canopy structure in tropical forests. In an empirical study with data acquired in a Guyanese tropical forest, we assessed the differences between top of canopy models (TCMs) derived from TLS measurements and from UAV imagery, processed using structure from motion. Firstly, canopy gaps lead to differences in TCMs derived from TLS and UAVs. UAV TCMs overestimate canopy height in gap areas and often fail to represent smaller gaps altogether. Secondly, it was demonstrated that forest change caused by logging can be detected by both TLS and UAV TCMs, although it is better depicted by the TLS. Thirdly, this research shows that both TLS and UAV TCMs are sensitive to the small variations in sensor positions during data collection. TCMs rendered from UAV data acquired over the same area at different moments are more similar (RMSE 0.11–0.63 m for tree height, and 0.14–3.05 m for gap areas) than those rendered from TLS data (RMSE 0.21–1.21 m for trees, and 1.02–2.48 m for gaps). This study provides support for a more informed decision for choosing between TLS and UAV TCMs to assess top of canopy in a tropical forest by advancing our understanding on: (i) how these technologies capture the top of the canopy, (ii) why their ability to reproduce the same model varies over repeated surveying sessions and (iii) general considerations such as the area coverage, costs, fieldwork time and processing requirements needed. PMID:29503719

Comparing terrestrial laser scanning and unmanned aerial vehicle structure from motion to assess top of canopy structure in tropical forests.

PubMed

Roşca, Sabina; Suomalainen, Juha; Bartholomeus, Harm; Herold, Martin

2018-04-06

Terrestrial laser scanning (TLS) and unmanned aerial vehicles (UAVs) equipped with digital cameras have attracted much attention from the forestry community as potential tools for forest inventories and forest monitoring. This research fills a knowledge gap about the viability and dissimilarities of using these technologies for measuring the top of canopy structure in tropical forests. In an empirical study with data acquired in a Guyanese tropical forest, we assessed the differences between top of canopy models (TCMs) derived from TLS measurements and from UAV imagery, processed using structure from motion. Firstly, canopy gaps lead to differences in TCMs derived from TLS and UAVs. UAV TCMs overestimate canopy height in gap areas and often fail to represent smaller gaps altogether. Secondly, it was demonstrated that forest change caused by logging can be detected by both TLS and UAV TCMs, although it is better depicted by the TLS. Thirdly, this research shows that both TLS and UAV TCMs are sensitive to the small variations in sensor positions during data collection. TCMs rendered from UAV data acquired over the same area at different moments are more similar (RMSE 0.11-0.63 m for tree height, and 0.14-3.05 m for gap areas) than those rendered from TLS data (RMSE 0.21-1.21 m for trees, and 1.02-2.48 m for gaps). This study provides support for a more informed decision for choosing between TLS and UAV TCMs to assess top of canopy in a tropical forest by advancing our understanding on: (i) how these technologies capture the top of the canopy, (ii) why their ability to reproduce the same model varies over repeated surveying sessions and (iii) general considerations such as the area coverage, costs, fieldwork time and processing requirements needed.

Scaling up close-range surveys, a challenge for the generalization of as-built data in industrial applications

NASA Astrophysics Data System (ADS)

Hullo, J.-F.; Thibault, G.

2014-06-01

As-built CAD data reconstructed from Terrestrial Laser Scanner (TLS) data are used for more than two decades by Electricité de France (EDF) to prepare maintenance operations in its facilities. But today, the big picture is renewed: "as-built virtual reality" must address a huge scale-up to provide data to an increasing number of applications. In this paper, we first present a wide multi-sensor multi-purpose scanning campaign performed in a 10 floor building of a power plant in 2013: 1083 TLS stations (about 40.109 3D points referenced under a 2 cm tolerance) and 1025 RGB panoramic images (340.106 pixels per point of view). As expected, this very large survey of high precision measurements in a complex environment stressed sensors and tools that were developed for more favourable conditions and smaller data sets. The whole survey process (tools and methods used from acquisition and processing to CAD reconstruction) underwent a detailed follow-up in order to state on the locks to a possible generalization to other buildings. Based on these recent feedbacks, we have highlighted some of these current bottlenecks in this paper: sensors denoising, automation in processes, data validation tools improvements, standardization of formats and (meta-) data structures.

On the nullspace of TLS multi-station adjustment

NASA Astrophysics Data System (ADS)

Sterle, Oskar; Kogoj, Dušan; Stopar, Bojan; Kregar, Klemen

2018-07-01

In the article we present an analytic aspect of TLS multi-station least-squares adjustment with the main focus on the datum problem. The datum problem is, compared to previously published researches, theoretically analyzed and solved, where the solution is based on nullspace derivation of the mathematical model. The importance of datum problem solution is seen in a complete description of TLS multi-station adjustment solutions from a set of all minimally constrained least-squares solutions. On a basis of known nullspace, estimable parameters are described and the geometric interpretation of all minimally constrained least squares solutions is presented. At the end a simulated example is used to analyze the results of TLS multi-station minimally constrained and inner constrained least-squares adjustment solutions.

The Engelbourg's ruins: from 3D TLS point cloud acquisition to 3D virtual and historic models

NASA Astrophysics Data System (ADS)

Koehl, Mathieu; Berger, Solveig; Nobile, Sylvain

2014-05-01

The Castle of Engelbourg was built at the beginning of the 13th century, at the top of the Schlossberg. It is situated on the territory of the municipality of Thann (France), at the crossroads of Alsace and Lorraine, and dominates the outlet of the valley of Thur. Its strategic position was one of the causes of its systematic destructions during the 17th century, and Louis XIV finished his fate by ordering his demolition in 1673. Today only few vestiges remain, of which a section of the main tower from about 7m of diameter and 4m of wide laying on its slice, unique characteristic in the regional castral landscape. It is visible since the valley, was named "the Eye of the witch", and became a key attraction of the region. The site, which extends over approximately one hectare, is for several years the object of numerous archaeological studies and is at the heart of a project of valuation of the vestiges today. It was indeed a key objective, among the numerous planned works, to realize a 3D model of the site in its current state, in other words, a virtual model "such as seized", exploitable as well from a cultural and tourist point of view as by scientists and in archaeological researches. The team of the ICube/INSA lab had in responsibility the realization of this model, the acquisition of the data until the delivery of the virtual model, thanks to 3D TLS and topographic surveying methods. It was also planned to integrate into this 3D model, data of 2D archives, stemming from series of former excavations. The objectives of this project were the following ones: • Acquisition of 3D digital data of the site and 3D modelling • Digitization of the 2D archaeological data and integration in the 3D model • Implementation of a database connected to the 3D model • Virtual Visit of the site The obtained results allowed us to visualize every 3D object individually, under several forms (point clouds, 3D meshed objects and models, etc.) and at several levels of detail. The 3D model integrated into a GIS is now a precious means of communication for the valuation of the site. Accessible to all, including to the distant people, he allows discover the castle and his history in an educational and relevant way. From an archaeological point of view, the 3D model brings an overall view and a backward movement on the constitution of the site, which a 2D document cannot easily offer. The 3D navigation and the integration of 2D data in the model allow analyze vestiges in another way, contributing to the faster establishment of new hypotheses. Complementary to other methods already exploited in archaeology, the analysis by the 3D vision is, for the scientists, a significant saving of time which they can so dedicate to the more thorough study of certain put aside hypotheses. In parallel, we created several panoramas, and set up a virtual and interactive visit of the site. In the optics to perpetuate this project, and to offer to the future users the ways to continue and to update this study, we tested and set up the methodologies of processing. We were so able to release procedures clear, orderly and applicable as well to the case of Engelbourg as to other similar studies. At least, some hypotheses permits to reconstruct virtually first versions of the original state of the castle.

A LiDAR application for the study of taxiway surface evenness and slope

NASA Astrophysics Data System (ADS)

Barbarella, M.; De Blasiis, M. R.; Fiani, M.; Santoni, M.

2014-05-01

Pavement roughness evaluation of airport runways/taxiways and scheduling of maintenance operations should be done according to well-defined procedures. Survey of geometric features of airport pavements is performed to verify the flow of water from the surface and to assure a level of roughness that allows the airplane to maneuver in the safest and most comfortable conditions. In particular the evaluation of longitudinal and transversal evenness of the runway and taxiway is carried out through topographic survey. The tachymetric survey has been carried out according to traditional topographic technique, which allows the evaluation of geometric position of isolated points with very high accuracy, but it is not very productive. Moreover it returns the pavement surface model through only few measured points. An alternative survey method, characterized by a good accuracy, high speed of acquisition and very high surveyed point density, is Terrestrial Laser Scanning (TLS), in static mode. In this paper we describe our experience aimed to validate the use of time-of-flight (TOF) TLS, based on a survey on a 200 m length segment of an international airport taxiway. From the acquired data we extracted the parameters of interest, especially the slope, and compared them with the values obtained from the traditional topographic survey. We also developed a proprietary software package to evaluate the slope and to analyze the statistical data. The software allows users to manage the flow of a semi-automatic calculation.

Applicability Analysis of Cloth Simulation Filtering Algorithm for Mobile LIDAR Point Cloud

NASA Astrophysics Data System (ADS)

Cai, S.; Zhang, W.; Qi, J.; Wan, P.; Shao, J.; Shen, A.

2018-04-01

Classifying the original point clouds into ground and non-ground points is a key step in LiDAR (light detection and ranging) data post-processing. Cloth simulation filtering (CSF) algorithm, which based on a physical process, has been validated to be an accurate, automatic and easy-to-use algorithm for airborne LiDAR point cloud. As a new technique of three-dimensional data collection, the mobile laser scanning (MLS) has been gradually applied in various fields, such as reconstruction of digital terrain models (DTM), 3D building modeling and forest inventory and management. Compared with airborne LiDAR point cloud, there are some different features (such as point density feature, distribution feature and complexity feature) for mobile LiDAR point cloud. Some filtering algorithms for airborne LiDAR data were directly used in mobile LiDAR point cloud, but it did not give satisfactory results. In this paper, we explore the ability of the CSF algorithm for mobile LiDAR point cloud. Three samples with different shape of the terrain are selected to test the performance of this algorithm, which respectively yields total errors of 0.44 %, 0.77 % and1.20 %. Additionally, large area dataset is also tested to further validate the effectiveness of this algorithm, and results show that it can quickly and accurately separate point clouds into ground and non-ground points. In summary, this algorithm is efficient and reliable for mobile LiDAR point cloud.

Investigating the Accuracy of Point Clouds Generated for Rock Surfaces

NASA Astrophysics Data System (ADS)

Seker, D. Z.; Incekara, A. H.

2016-12-01

Point clouds which are produced by means of different techniques are widely used to model the rocks and obtain the properties of rock surfaces like roughness, volume and area. These point clouds can be generated by applying laser scanning and close range photogrammetry techniques. Laser scanning is the most common method to produce point cloud. In this method, laser scanner device produces 3D point cloud at regular intervals. In close range photogrammetry, point cloud can be produced with the help of photographs taken in appropriate conditions depending on developing hardware and software technology. Many photogrammetric software which is open source or not currently provide the generation of point cloud support. Both methods are close to each other in terms of accuracy. Sufficient accuracy in the mm and cm range can be obtained with the help of a qualified digital camera and laser scanner. In both methods, field work is completed in less time than conventional techniques. In close range photogrammetry, any part of rock surfaces can be completely represented owing to overlapping oblique photographs. In contrast to the proximity of the data, these two methods are quite different in terms of cost. In this study, whether or not point cloud produced by photographs can be used instead of point cloud produced by laser scanner device is investigated. In accordance with this purpose, rock surfaces which have complex and irregular shape located in İstanbul Technical University Ayazaga Campus were selected as study object. Selected object is mixture of different rock types and consists of both partly weathered and fresh parts. Study was performed on a part of 30m x 10m rock surface. 2D and 3D analysis were performed for several regions selected from the point clouds of the surface models. 2D analysis is area-based and 3D analysis is volume-based. Analysis conclusions showed that point clouds in both are similar and can be used as alternative to each other. This proved that point cloud produced using photographs which are both economical and enables to produce data in less time can be used in several studies instead of point cloud produced by laser scanner.

Keeping mammalian mutation load in check: regulation of the activity of error-prone DNA polymerases by p53 and p21.

PubMed

Livneh, Zvi

2006-09-01

To overcome DNA lesions that block replication the cell employs translesion DNA synthesis (TLS) polymerases, a group of low fidelity DNA polymerases that have the capacity to bypass a wide range of DNA lesions. This TLS process is also termed error-prone repair, due to its inherent mutagenic nature. We have recently shown that the tumor suppressor p53 and the cell cycle inhibitor p21 are global regulators of TLS. When these proteins are missing or nonfunctional, TLS gets out of control: its extent increases to very high levels, and its fidelity decreases, causing an overall increase in mutation load. This may be explained by the loss of selectivity in the bypass of specific DNA lesions by their cognate specialized polymerases, such that lesion bypass continues to a maximum, regardless of the price paid in increased mutations. The p53 and p21 proteins are also required for efficient UV light-induced monoubiquitination of PCNA, which is consistent with a model in which this modification of PCNA is necessary but not sufficient for the normal activity of TLS. This regulation suggests that TLS evolved in mammals as a system that balances gain in survival with a tolerable mutational cost, and that disturbing this balance causes a potentially harmful increase in mutations, which might play a role in carcinogenesis.

Nucks1 synergizes with Trp53 to promote radiation lymphomagenesis in mice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yue, Yangbo; Leung, Stanley G.; Liu, Yueyong

NUCKS1 is a 27 kD vertebrate-specific protein, with a role in the DNA damage response. Here, we show that after 4 Gy total-body X-irradiation, Trp53+/- Nucks1+/- mice more rapidly developed tumors, particularly thymic lymphoma (TL), than Trp53+/- mice. TLs in both cohorts showed loss of heterozygosity (LOH) of the Trp53+ allele in essentially all cases. In contrast, LOH of the Nucks1+ allele was rare. Nucks1 expression correlated well with Nucks1 gene dosage in normal thymi, but was increased in the majority of TLs from Trp53+/- Nucks1+/- mice, suggesting that elevated Nucks1 message may be associated with progression towards malignancy inmore » vivo. Trp53+/- Nucks1+/- mice frequently succumbed to CD4- CD8- TLs harboring translocations involving Igh but not Tcra/d, indicating TLs in Trp53+/- Nucks1+/- mice mostly originated prior to the double positive stage and at earlier lineage than TLs in Trp53+/- mice. Monoclonal rearrangements at Tcrb were more prevalent in TLs from Trp53+/- Nucks1+/- mice, as was infiltration of primary TL cells to distant organs (liver, kidney and spleen). We propose that, in the context of Trp53 deficiency, wild type levels of Nucks1 are required to suppress radiation-induced TL, likely through the role of the NUCKS1 protein in the DNA damage response.« less

Roles of PCNA ubiquitination and TLS polymerases κ and η in the bypass of methyl methanesulfonate-induced DNA damage

PubMed Central

Wit, Niek; Buoninfante, Olimpia Alessandra; van den Berk, Paul C.M.; Jansen, Jacob G.; Hogenbirk, Marc A.; de Wind, Niels; Jacobs, Heinz

2015-01-01

Translesion synthesis (TLS) provides a highly conserved mechanism that enables DNA synthesis on a damaged template. TLS is performed by specialized DNA polymerases of which polymerase (Pol) κ is important for the cellular response to DNA damage induced by benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE), ultraviolet (UV) light and the alkylating agent methyl methanesulfonate (MMS). As TLS polymerases are intrinsically error-prone, tight regulation of their activity is required. One level of control is provided by ubiquitination of the homotrimeric DNA clamp PCNA at lysine residue 164 (PCNA-Ub). We here show that Polκ can function independently of PCNA modification and that Polη can function as a backup during TLS of MMS-induced lesions. Compared to cell lines deficient for PCNA modification (PcnaK164R) or Polκ, double mutant cell lines display hypersensitivity to MMS but not to BPDE or UV-C. Double mutant cells also displayed delayed post-replicative TLS, accumulate higher levels of replication stress and delayed S-phase progression. Furthermore, we show that Polη and Polκ are redundant in the DNA damage bypass of MMS-induced DNA damage. Taken together, we provide evidence for PCNA-Ub-independent activation of Polκ and establish Polη as an important backup polymerase in the absence of Polκ in response to MMS-induced DNA damage. PMID:25505145

Nucks1 synergizes with Trp53 to promote radiation lymphomagenesis in mice

DOE PAGES

Yue, Yangbo; Leung, Stanley G.; Liu, Yueyong; ...

2016-08-16

NUCKS1 is a 27 kD vertebrate-specific protein, with a role in the DNA damage response. Here, we show that after 4 Gy total-body X-irradiation, Trp53+/- Nucks1+/- mice more rapidly developed tumors, particularly thymic lymphoma (TL), than Trp53+/- mice. TLs in both cohorts showed loss of heterozygosity (LOH) of the Trp53+ allele in essentially all cases. In contrast, LOH of the Nucks1+ allele was rare. Nucks1 expression correlated well with Nucks1 gene dosage in normal thymi, but was increased in the majority of TLs from Trp53+/- Nucks1+/- mice, suggesting that elevated Nucks1 message may be associated with progression towards malignancy inmore » vivo. Trp53+/- Nucks1+/- mice frequently succumbed to CD4- CD8- TLs harboring translocations involving Igh but not Tcra/d, indicating TLs in Trp53+/- Nucks1+/- mice mostly originated prior to the double positive stage and at earlier lineage than TLs in Trp53+/- mice. Monoclonal rearrangements at Tcrb were more prevalent in TLs from Trp53+/- Nucks1+/- mice, as was infiltration of primary TL cells to distant organs (liver, kidney and spleen). We propose that, in the context of Trp53 deficiency, wild type levels of Nucks1 are required to suppress radiation-induced TL, likely through the role of the NUCKS1 protein in the DNA damage response.« less

Treatment of Early Stage Endometrial Cancer by Transumbilical Laparoendoscopic Single-Site Surgery Versus Traditional Laparoscopic Surgery

PubMed Central

Cai, Hui-hua; Liu, Mu-biao; He, Yuan-li

2016-01-01

Abstract To compare the outcomes of transumbilical laparoendoscopic single-site surgery (TU-LESS) versus traditional laparoscopic surgery (TLS) for early stage endometrial cancer (EC). We retrospectively reviewed the medical records of patients with early stage EC who were surgically treated by TU-LESS or TLS between 2011 and 2014 in a tertiary care teaching hospital. We identified 18 EC patients who underwent TU-LESS. Propensity score matching was used to match this group with 18 EC patients who underwent TLS. All patients underwent laparoscopic-assisted vaginal hysterectomy, bilateral salpingo-oophorectomy, and systematic pelvic lymphadenectomy by TU-LESS or TLS without conversion to laparoscopy or laparotomy. Number of pelvic lymph nodes retrieved, operative time and estimated blood loss were comparable between 2 groups. Satisfaction values of the cosmetic outcome evaluated by the patient at day 30 after surgery were significantly higher in TU-LESS group than that in TLS group (9.6 ± 0.8 vs 7.5 ± 0.7, P < 0.001), while there was no statistical difference in postoperative complications within 30 days after surgery, postoperative hospital stay, and hospital cost. For the surgical management of early stage EC, TU-LESS may be a feasible alternative approach to TLS, with comparable short-term surgical outcomes and superior cosmetic outcome. Future large-scale prospective studies are needed to identify these benefits. PMID:27057851

Hypercalcemia in tumor lysis syndrome.

PubMed

Shah, Binay Kumar

2014-09-01

Tumor lysis syndrome (TLS) is characterized by hyperkalemia, hyperuricemia, hypocalcemia and hyperphosphatemia. This report describes a case of hypercalcemia in TLS in a patient with diffuse large B cell lymphoma.

LiDAR Point Cloud and Stereo Image Point Cloud Fusion

DTIC Science & Technology

2013-09-01

LiDAR point cloud (right) highlighting linear edge features ideal for automatic registration...point cloud (right) highlighting linear edge features ideal for automatic registration. Areas where topography is being derived, unfortunately, do...with the least amount of automatic correlation errors was used. The following graphic (Figure 12) shows the coverage of the WV1 stereo triplet as

DNA polymerase ζ cooperates with polymerases κ and ι in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients

PubMed Central

Ziv, Omer; Geacintov, Nicholas; Nakajima, Satoshi; Yasui, Akira; Livneh, Zvi

2009-01-01

Human cells tolerate UV-induced cyclobutane pyrimidine dimers (CPD) by translesion DNA synthesis (TLS), carried out by DNA polymerase η, the POLH gene product. A deficiency in DNA polymerase η due to germ-line mutations in POLH causes the hereditary disease xeroderma pigmentosum variant (XPV), which is characterized by sunlight sensitivity and extreme predisposition to sunlight-induced skin cancer. XPV cells are UV hypermutable due to the activity of mutagenic TLS across CPD, which explains the cancer predisposition of the patients. However, the identity of the backup polymerase that carries out this mutagenic TLS was unclear. Here, we show that DNA polymerase ζ cooperates with DNA polymerases κ and ι to carry out error-prone TLS across a TT CPD. Moreover, DNA polymerases ζ and κ, but not ι, protect XPV cells against UV cytotoxicity, independently of nucleotide excision repair. This presents an extreme example of benefit-risk balance in the activity of TLS polymerases, which provide protection against UV cytotoxicity at the cost of increased mutagenic load. PMID:19564618

DNA polymerase zeta cooperates with polymerases kappa and iota in translesion DNA synthesis across pyrimidine photodimers in cells from XPV patients.

PubMed

Ziv, Omer; Geacintov, Nicholas; Nakajima, Satoshi; Yasui, Akira; Livneh, Zvi

2009-07-14

Human cells tolerate UV-induced cyclobutane pyrimidine dimers (CPD) by translesion DNA synthesis (TLS), carried out by DNA polymerase eta, the POLH gene product. A deficiency in DNA polymerase eta due to germ-line mutations in POLH causes the hereditary disease xeroderma pigmentosum variant (XPV), which is characterized by sunlight sensitivity and extreme predisposition to sunlight-induced skin cancer. XPV cells are UV hypermutable due to the activity of mutagenic TLS across CPD, which explains the cancer predisposition of the patients. However, the identity of the backup polymerase that carries out this mutagenic TLS was unclear. Here, we show that DNA polymerase zeta cooperates with DNA polymerases kappa and iota to carry out error-prone TLS across a TT CPD. Moreover, DNA polymerases zeta and kappa, but not iota, protect XPV cells against UV cytotoxicity, independently of nucleotide excision repair. This presents an extreme example of benefit-risk balance in the activity of TLS polymerases, which provide protection against UV cytotoxicity at the cost of increased mutagenic load.

Characterisation of Intensity Values on Terrestrial Laser Scanning for Recording Enhancement

NASA Astrophysics Data System (ADS)

Balaguer-Puig, M.; Molada-Tebar, A.; Marqués-Mateu, A.; Lerma, J. L.

2017-08-01

Mapping surveys based on terrestrial laser scanning (TLS) are common nowadays for different purposes such as documentation of cultural heritage assets. The chance to extract relevant information from TLS surveys depends not only on the fast acquisition of XYZ coordinates, but also on the meaningful intensity values of the fired objects. TLS behaviour depends on several known factors such as distance, texture, roughness, colour and albedo. This paper seeks to find out the mathematical relationship between the TLS intensity values and the colorimetric data using a colour chart. In order to do so, objective colour specification based on well-known colour spaces is needed. The approach used here started with scanning a colour chart containing a number of colour patches with known chromatic and reflection characteristics. After several transformations, the results allowed us to characterise the intensity behaviour of a time-of-flight laser scanner. The characterisation of the intensity values are tested indoor on the colour chart and outdoor on an archaeological shelter. Promising results are obtained to enhance the behaviour of the intensity values coming from the TLS.

Generation of the novel monoclonal antibody against TLS/EWS-CHOP chimeric oncoproteins that is applicable to one of the most sensitive assays for myxoid and round cell liposarcomas.

PubMed

Oikawa, Kosuke; Ishida, Tsuyoshi; Imamura, Tetsuo; Yoshida, Keiichi; Takanashi, Masakatsu; Hattori, Hiroyuki; Ishikawa, Akio; Fujita, Koji; Yamamoto, Kengo; Matsubayashi, Jun; Kuroda, Masahiko; Mukai, Kiyoshi

2006-03-01

The fusion oncoproteins, TLS-CHOP and EWS-CHOP, are characteristic markers for myxoid and round cell liposarcomas (MLS/RCLS). Especially, the peptide sequence of 26 amino acids corresponding to the normally untranslated CHOP exon 2 and parts of exon 3 (5'-UTR) is a unique structure for these chimeric proteins. In this report, we have generated monoclonal antibodies against the unique peptide sequence of TLS/EWS-CHOP oncoproteins. These antibodies reacted with TLS-CHOP fusion protein, but not reacted with normal TLS and CHOP proteins by Western blot analysis. In addition, one of the antibodies also recognized the chimeric oncoprotein in archival paraffin-embedded tissue samples of MLS/RCLS. The oncoprotein was detectable by the antibody even in the paraffin-embedded tissue samples whose mRNAs were too degraded to be detected by a nested reverse transcription-polymerase chain reaction-based assay. Thus, the molecular assay using the novel antibody is expected to be one of the most sensitive diagnostic assays for MLS/RCLS.

LIDAR Point Cloud Data Extraction and Establishment of 3D Modeling of Buildings

NASA Astrophysics Data System (ADS)

Zhang, Yujuan; Li, Xiuhai; Wang, Qiang; Liu, Jiang; Liang, Xin; Li, Dan; Ni, Chundi; Liu, Yan

2018-01-01

This paper takes the method of Shepard’s to deal with the original LIDAR point clouds data, and generate regular grid data DSM, filters the ground point cloud and non ground point cloud through double least square method, and obtains the rules of DSM. By using region growing method for the segmentation of DSM rules, the removal of non building point cloud, obtaining the building point cloud information. Uses the Canny operator to extract the image segmentation is needed after the edges of the building, uses Hough transform line detection to extract the edges of buildings rules of operation based on the smooth and uniform. At last, uses E3De3 software to establish the 3D model of buildings.

A robust real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Wenyang; Cheung, Yam; Sawant, Amit

2016-05-15

Purpose: To develop a robust and real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system. Methods: The authors have developed a robust and fast surface reconstruction method on point clouds acquired by the photogrammetry system, without explicitly solving the partial differential equation required by a typical variational approach. Taking advantage of the overcomplete nature of the acquired point clouds, their method solves and propagates a sparse linear relationship from the point cloud manifold to the surface manifold, assuming both manifolds share similar local geometry. With relatively consistent point cloud acquisitions, the authors propose a sparsemore » regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, assuming that the point correspondences built by the iterative closest point (ICP) is reasonably accurate and have residual errors following a Gaussian distribution. To accommodate changing noise levels and/or presence of inconsistent occlusions during the acquisition, the authors further propose a modified sparse regression (MSR) model to model the potentially large and sparse error built by ICP with a Laplacian prior. The authors evaluated the proposed method on both clinical point clouds acquired under consistent acquisition conditions and on point clouds with inconsistent occlusions. The authors quantitatively evaluated the reconstruction performance with respect to root-mean-squared-error, by comparing its reconstruction results against that from the variational method. Results: On clinical point clouds, both the SR and MSR models have achieved sub-millimeter reconstruction accuracy and reduced the reconstruction time by two orders of magnitude to a subsecond reconstruction time. On point clouds with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent and robust performance despite the introduced occlusions. Conclusions: The authors have developed a fast and robust surface reconstruction method on point clouds captured from a 3D surface photogrammetry system, with demonstrated sub-millimeter reconstruction accuracy and subsecond reconstruction time. It is suitable for real-time motion tracking in radiotherapy, with clear surface structures for better quantifications.« less

A robust real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system.

PubMed

Liu, Wenyang; Cheung, Yam; Sawant, Amit; Ruan, Dan

2016-05-01

To develop a robust and real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system. The authors have developed a robust and fast surface reconstruction method on point clouds acquired by the photogrammetry system, without explicitly solving the partial differential equation required by a typical variational approach. Taking advantage of the overcomplete nature of the acquired point clouds, their method solves and propagates a sparse linear relationship from the point cloud manifold to the surface manifold, assuming both manifolds share similar local geometry. With relatively consistent point cloud acquisitions, the authors propose a sparse regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, assuming that the point correspondences built by the iterative closest point (ICP) is reasonably accurate and have residual errors following a Gaussian distribution. To accommodate changing noise levels and/or presence of inconsistent occlusions during the acquisition, the authors further propose a modified sparse regression (MSR) model to model the potentially large and sparse error built by ICP with a Laplacian prior. The authors evaluated the proposed method on both clinical point clouds acquired under consistent acquisition conditions and on point clouds with inconsistent occlusions. The authors quantitatively evaluated the reconstruction performance with respect to root-mean-squared-error, by comparing its reconstruction results against that from the variational method. On clinical point clouds, both the SR and MSR models have achieved sub-millimeter reconstruction accuracy and reduced the reconstruction time by two orders of magnitude to a subsecond reconstruction time. On point clouds with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent and robust performance despite the introduced occlusions. The authors have developed a fast and robust surface reconstruction method on point clouds captured from a 3D surface photogrammetry system, with demonstrated sub-millimeter reconstruction accuracy and subsecond reconstruction time. It is suitable for real-time motion tracking in radiotherapy, with clear surface structures for better quantifications.

A robust real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system

PubMed Central

Liu, Wenyang; Cheung, Yam; Sawant, Amit; Ruan, Dan

2016-01-01

Purpose: To develop a robust and real-time surface reconstruction method on point clouds captured from a 3D surface photogrammetry system. Methods: The authors have developed a robust and fast surface reconstruction method on point clouds acquired by the photogrammetry system, without explicitly solving the partial differential equation required by a typical variational approach. Taking advantage of the overcomplete nature of the acquired point clouds, their method solves and propagates a sparse linear relationship from the point cloud manifold to the surface manifold, assuming both manifolds share similar local geometry. With relatively consistent point cloud acquisitions, the authors propose a sparse regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, assuming that the point correspondences built by the iterative closest point (ICP) is reasonably accurate and have residual errors following a Gaussian distribution. To accommodate changing noise levels and/or presence of inconsistent occlusions during the acquisition, the authors further propose a modified sparse regression (MSR) model to model the potentially large and sparse error built by ICP with a Laplacian prior. The authors evaluated the proposed method on both clinical point clouds acquired under consistent acquisition conditions and on point clouds with inconsistent occlusions. The authors quantitatively evaluated the reconstruction performance with respect to root-mean-squared-error, by comparing its reconstruction results against that from the variational method. Results: On clinical point clouds, both the SR and MSR models have achieved sub-millimeter reconstruction accuracy and reduced the reconstruction time by two orders of magnitude to a subsecond reconstruction time. On point clouds with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent and robust performance despite the introduced occlusions. Conclusions: The authors have developed a fast and robust surface reconstruction method on point clouds captured from a 3D surface photogrammetry system, with demonstrated sub-millimeter reconstruction accuracy and subsecond reconstruction time. It is suitable for real-time motion tracking in radiotherapy, with clear surface structures for better quantifications. PMID:27147347

Improved characterization, monitoring and instability assessment of high rock faces by integrating TLS and GB-InSAR

NASA Astrophysics Data System (ADS)

Bianchetti, Matteo; Agliardi, Federico; Villa, Alberto; Battista Crosta, Giovanni; Rivolta, Carlo

2015-04-01

Rockfall risk analysis require quantifying rockfall onset susceptibility and magnitude scenarios at source areas, and the expected rockfall trajectories and related dynamic quantities. Analysis efforts usually focus on the rockfall runout component, whereas rock mass characterization and block size distribution quantification, monitoring and analysis of unstable rock volumes are usually performed using simplified approaches, due to technological and site-specific issues. Nevertheless, proper quantification of rock slope stability and rockfall magnitude scenarios is key when dealing with high rock walls, where widespread rockfall sources and high variability of release mechanisms and block volumes can result in excessive modelling uncertainties and poorly constrained mitigation measures. We explored the potential of integrating field, remote sensing, structural analysis and stability modelling techniques to improve hazard assessment at the Gallivaggio sanctuary site, a XVI century heritage located along the State Road 36 in the Spluga Valley (Italian Central Alps). The site is impended by a subvertical cliff up to 600 m high, made of granitic orthogneiss of the Truzzo granitic complex (Tambo Nappe, upper Pennidic domain). The rock mass is cut by NNW and NW-trending slope-scale structural lineaments and by 5-6 fracture sets with variable spatial distribution, spacing and persistence, which bound blocks up to tens of cubic meters and control the 3D slope morphology. The area is characterised by widespread rock slope instability from rockfalls to massive failures. Although a 180 m long embankment was built to protect the site from rockfalls, concerns remain about potential large unstable rock volumes or flyrocks projected by the widely observed impact fragmentation of stiff rock blocks. Thus, the authority in charge started a series of periodical GB-InSAR monitoring surveys using LiSALabTM technology (12 surveys in 2011-2014), which outlined the occurrence of unstable spots spread over the cliff, with cm-scale cumulative displacements in the observation period. To support the interpretation and analysis of these data, we carried out multitemporal TLS surveys (5 sessions between September 2012 and October 2014) using a Riegl VZ-1000 long-range laser scanner. We performed rock mass structural analyses on dense TLS point clouds using two different approaches: 1) manual discontinuity orientation and intensity measurement from digital outcrops; 2) automatic feature extraction and intensity evaluation through the development of an original Matlab tool, suited for multi-scale applications and optimized for parallel computing. Results were validated using field discontinuity measurements and compared to evaluate advantages and limitations of different approaches, and allowed: 1) outlining the precise location, geometry and kinematics of unstable blocks and block clusters corresponding to radar moving spots; 2) performing stability analyses; 3) quantifying rockwall changes over the observation period. Our analysis provided a robust spatial characterization of rockfall sources, block size distribution and onset susceptibility as input for 3D runout modelling and quantitative risk analysis.

A 3D Analysis of Rock Block Deformation and Failure Mechanics Using Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Rowe, Emily; Hutchinson, D. Jean; Kromer, Ryan A.; Edwards, Tom

2017-04-01

Many natural geological hazards are present along the Thompson River corridor in British Columbia, Canada, including one particularly hazardous rocky slope known as the White Canyon. Railway tracks used by Canadian National (CN) and Canadian Pacific (CP) Railway companies pass through this area at the base of the Canyon slope. The geologically complex and weathered rock face exposed at White Canyon is prone to rockfalls. With a limited ditch capacity, these falling rocks have the potential to land on the tracks and therefore increase the risk of train derailment. Since 2012, terrestrial laser scanning (TLS) data has been collected at this site on a regular basis to enable researchers at Queen's University to study these rockfalls in greater detail. In this paper, the authors present a summary of an analysis of these TLS datasets including an examination of the pre-failure deformation patterns exhibited by failed rock blocks as well as an investigation into the influence of structural constraints on the pre-failure behavior of these blocks. Aligning rockfall source zones in an early point cloud dataset to a later dataset generates a transformation matrix describing the movement of the block from one scan to the next. This process was repeated such that the motion of the block over the entire TLS data coverage period was measured. A 3D roto-translation algorithm was then used to resolve the motion into translation and rotation components (Oppikofer et al. 2009; Kromer et al. 2015). Structural information was plotted on a stereonet for further analysis. A total of 111 rockfall events exceeding a volume of 1 m3 were analyzed using this approach. The study reveals that although some rockfall source blocks blocks do not exhibit detectable levels of deformation prior to failure, others do experience cm-level translation and rotation on the order of 1 to 6 degrees before detaching from the slope. Moreover, these movements may, in some cases, be related to the discontinuity planes on the slope that were confining the block. It is concluded that rock blocks in White Canyon may be classified as one of five main failure mechanisms based on their pre-failure deformation and structure: planar slide, topple, rotation, wedge, and overhang, with overhang failures representing a large portion of rockfalls in this area. Overhang rockfalls in the White Canyon are characterized by blocks that (a) are not supported by an underlying discontinuity plane, and (b) generally do not exhibit pre-failure deformation. Though overhanging rock blocks are a structural subset of toppling failure, their behavior suggests a different mechanism of detachment. Future work will further populate the present database of rockfalls in White Canyon and will expand the study to include other sites along this corridor. The ultimate goal of this research is to establish warning thresholds based on deformation magnitudes for rockfalls in White Canyon to assist Canadian railways in better understanding and managing these slopes.

Calculation of the rockwall recession rate of a limestone cliff, affected by rockfalls, using cosmogenic chlorine-36. Case study of the Montsec Range (Eastern Pyrenees, Spain)

NASA Astrophysics Data System (ADS)

Domènech, Guillem; Corominas, Jordi; Mavrouli, Olga; Merchel, Silke; Abellán, Antonio; Pavetich, Stefan; Rugel, Georg

2018-04-01

Cliff erosion may be a major problem in settled areas affecting populations and producing economic and ecological losses. In this paper we present a procedure to calculate the long-term retreat rate of a cliff affected by rockfalls in the Montsec Range, Eastern Pyrenees (Spain). It is composed of low, densely fractured limestones; and the rockwall is affected by rockfalls of different sizes. The rockfall scars are clearly distinguishable by their regular boundaries and by their orange colour, which contrast with the greyish old reference surface (S0) of the cliff face. We have dated different stepped surfaces of the rockwall, including S0, using cosmogenic 36Cl. The total amount of material released by rockfall activity was calculated using a high definition point cloud of the slope face obtained with a terrestrial laser scanner (TLS). The present rockwall surface has been subtracted from the reconstructed old cliff surface. This has allowed the calculation of the total volume released by rockfalls and of the retreat rate. The latter ranges from 0.31 to 0.37 mm·a- 1. This value is of the same order of magnitude as that obtained by other researchers in neighbouring regions in Spain, having similar geology and affected by rockfalls.

Close Range Uav Accurate Recording and Modeling of St-Pierre Neo-Romanesque Church in Strasbourg (france)

NASA Astrophysics Data System (ADS)

Murtiyoso, A.; Grussenmeyer, P.; Freville, T.

2017-02-01

Close-range photogrammetry is an image-based technique which has often been used for the 3D documentation of heritage objects. Recently, advances in the field of image processing and UAVs (Unmanned Aerial Vehicles) have resulted in a renewed interest in this technique. However, commercially ready-to-use UAVs are often equipped with smaller sensors in order to minimize payload and the quality of the documentation is still an issue. In this research, two commercial UAVs (the Sensefly Albris and DJI Phantom 3 Professional) were setup to record the 19th century St-Pierre-le-Jeune church in Strasbourg, France. Several software solutions (commercial and open source) were used to compare both UAVs' images in terms of calibration, accuracy of external orientation, as well as dense matching. Results show some instability in regards to the calibration of Phantom 3, while the Albris had issues regarding its aerotriangulation results. Despite these shortcomings, both UAVs succeeded in producing dense point clouds of up to a few centimeters in accuracy, which is largely sufficient for the purposes of a city 3D GIS (Geographical Information System). The acquisition of close range images using UAVs also provides greater LoD flexibility in processing. These advantages over other methods such as the TLS (Terrestrial Laser Scanning) or terrestrial close range photogrammetry can be exploited in order for these techniques to complement each other.

Automatic Classification of Trees from Laser Scanning Point Clouds

NASA Astrophysics Data System (ADS)

Sirmacek, B.; Lindenbergh, R.

2015-08-01

Development of laser scanning technologies has promoted tree monitoring studies to a new level, as the laser scanning point clouds enable accurate 3D measurements in a fast and environmental friendly manner. In this paper, we introduce a probability matrix computation based algorithm for automatically classifying laser scanning point clouds into 'tree' and 'non-tree' classes. Our method uses the 3D coordinates of the laser scanning points as input and generates a new point cloud which holds a label for each point indicating if it belongs to the 'tree' or 'non-tree' class. To do so, a grid surface is assigned to the lowest height level of the point cloud. The grids are filled with probability values which are calculated by checking the point density above the grid. Since the tree trunk locations appear with very high values in the probability matrix, selecting the local maxima of the grid surface help to detect the tree trunks. Further points are assigned to tree trunks if they appear in the close proximity of trunks. Since heavy mathematical computations (such as point cloud organization, detailed shape 3D detection methods, graph network generation) are not required, the proposed algorithm works very fast compared to the existing methods. The tree classification results are found reliable even on point clouds of cities containing many different objects. As the most significant weakness, false detection of light poles, traffic signs and other objects close to trees cannot be prevented. Nevertheless, the experimental results on mobile and airborne laser scanning point clouds indicate the possible usage of the algorithm as an important step for tree growth observation, tree counting and similar applications. While the laser scanning point cloud is giving opportunity to classify even very small trees, accuracy of the results is reduced in the low point density areas further away than the scanning location. These advantages and disadvantages of two laser scanning point cloud sources are discussed in detail.

Low frequency critical current noise and two level system defects in Josephson junctions

NASA Astrophysics Data System (ADS)

Nugroho, Christopher Daniel

The critical current in a Josephson junction is known to exhibit a 1/falpha low frequency noise. Implemented as a superconducting qubit, this low frequency noise can lead to decoherence. While the 1/f noise has been known to arise from an ensemble of two level systems connected to the tunnel barrier, the precise microscopic nature of these TLSs remain a mystery. In this thesis we will present measurements of the 1/f alpha low frequency noise in the critical current and tunneling resistance of Al-AlOx-Al Josephson junctions. Measurements in a wide range of resistively shunted and unshunted junctions confirm the equality of critical current and tunneling resistance noise. That is the critical current fluctuation corresponds to fluctuations of the tunneling resistance. In not too small Al-AlOx-Al junctions we have found that the fractional power spectral density scales linearly with temperature. We confirmed that the 1/falpha power spectrum is the result of a large number of two level systems modulating the tunneling resistance. At small junction areas and low temperatures, the number of thermally active TLSs is insufficient to integrate out a featureless 1/ f spectral shape. By analyzing the spectral variance in small junction areas, we have been able to deduce the TLS defect density, n ≈ 2.53 per micrometer squared per Kelvin spread in the TLS energy per factor e in the TLS lifetimes. This density is consistent with the density of tunneling TLSs found in glassy insulators, as well as the density deduced from coherent TLSs interacting at qubit frequencies. The deduced TLS density combined with the magnitude of the 1/f power spectral density in large area junctions, gives an average TLS effective area, A ˜ 0.3 nanometer squared. In ultra small tunnel junctions, we have studied the time-domain dynamics of isolated TLSs. We have found a TLS whose dynamics is described by the quantum tunneling between the two localized wells, and a one-phonon absorption/emission switching rate. From the quantum limiting rate and the WKB approximation, we estimated that the TLS has a mass and tunneling distance product consistent with an atomic mass tunneling through crystal lattice distances. At higher temperatures TLSs have been found that obey a simple thermal activation dynamics. By analyzing the TLS response to an external electric field, we have deduced that the TLS electric dipole is in the order of, P ˜ 1 electron-Angstrom, consistent with the TLS having the charge of one electron tunneling through a disorder potential of distances, d ˜ 1 Angstrom.

Recording Cultural Heritage Using Terrestrial Laserscanning - Dealing with the System, the Huge Datasets they Create and Ways to Extract the Necessary Deliverables you can Work with

NASA Astrophysics Data System (ADS)

Christofori, E.; Bierwagen, J.

2013-07-01

Recording Cultural Heritage objects using terrestrial laserscanning becomes more and more popular over the last years. Since terrestrial Laserscanning System (TLS) Manufacturers have strongly increased the amount and speed of data captured with a single scan at each system upgrade and cutting down system costs the use of TLS Systems for recording cultural heritage is an option for recording worth to think about beside traditional methods like Photogrammetric. TLS Systems can be a great tool for capturing complex cultural heritage object within a short amount of time beside the traditional methods but can be a nightmare to handle for further process if not used right while capturing. Furthermore TLS Systems still have to be recognized as survey equipment, even though some of the manufactures promote them as everyday tool. They have to be used in an intelligent way having in mind the clients and the individual cultural objects needs. Thus the efficient way to use TLS Systems for data recording becomes a relevant topic to deal with the huge Amount of data the Systems collect while recording. Already small projects can turn into huge Pointcloud Datasets that End user, like Architects or Archaeologist neither can't deal with as their technical equipment doesn't fit the requirements of the Dataset nor do they have the software tools to use the Data as the current software tools still are high prized. Even the necessary interpretation of the Dataset can be a tough task if the people who have to work on with the Pointcloud aren't educated right in order to understand TLS and the results it creates. The use of TLS Systems has to have in mind the project requirements of the individual Heritage Object, like the required accuracy, standards for Levels of Details (e.g. "Empfehlungen für die Baudokumentation, Günther Eckstein, Germany"), the required kind of Deliverables (Visualization, 2D Drawings, True Deformation Drawings, 3D Models, BIM or 4D - Animations) as well as the Projects budget, restrictions and special conditions of the object. And if it's used in the right way TLS will fulfil all request and furthermore create additional recording, deliverable and financial benefit. Christofori und Partner is working with TLS Systems on cultural heritage Objects since 2005 trying to optimize the use of these systems (even in combining different systems like TLS, photogrammetric or new techniques) as well as creating useable deliverables for the Clients (Owner, Conservator, Designers and the Public) they can work on with.

Georeferencing UAS Derivatives Through Point Cloud Registration with Archived Lidar Datasets

NASA Astrophysics Data System (ADS)

Magtalas, M. S. L. Y.; Aves, J. C. L.; Blanco, A. C.

2016-10-01

Georeferencing gathered images is a common step before performing spatial analysis and other processes on acquired datasets using unmanned aerial systems (UAS). Methods of applying spatial information to aerial images or their derivatives is through onboard GPS (Global Positioning Systems) geotagging, or through tying of models through GCPs (Ground Control Points) acquired in the field. Currently, UAS (Unmanned Aerial System) derivatives are limited to meter-levels of accuracy when their generation is unaided with points of known position on the ground. The use of ground control points established using survey-grade GPS or GNSS receivers can greatly reduce model errors to centimeter levels. However, this comes with additional costs not only with instrument acquisition and survey operations, but also in actual time spent in the field. This study uses a workflow for cloud-based post-processing of UAS data in combination with already existing LiDAR data. The georeferencing of the UAV point cloud is executed using the Iterative Closest Point algorithm (ICP). It is applied through the open-source CloudCompare software (Girardeau-Montaut, 2006) on a `skeleton point cloud'. This skeleton point cloud consists of manually extracted features consistent on both LiDAR and UAV data. For this cloud, roads and buildings with minimal deviations given their differing dates of acquisition are considered consistent. Transformation parameters are computed for the skeleton cloud which could then be applied to the whole UAS dataset. In addition, a separate cloud consisting of non-vegetation features automatically derived using CANUPO classification algorithm (Brodu and Lague, 2012) was used to generate a separate set of parameters. Ground survey is done to validate the transformed cloud. An RMSE value of around 16 centimeters was found when comparing validation data to the models georeferenced using the CANUPO cloud and the manual skeleton cloud. Cloud-to-cloud distance computations of CANUPO and manual skeleton clouds were obtained with values for both equal to around 0.67 meters at 1.73 standard deviation.

How Alterations in the Cdt1 Expression Lead to Gene Amplification in Breast Cancer

DTIC Science & Technology

2011-07-01

absence of extrinsic DNA damage. We measured the TLS activity by measuring the mutation frequency in a supF gene (in a shuttle vector) subjected to UV...induced DNA damage before its introduction into the cells. Error-prone TLS activity will mutate the supF gene , which is scored by a blue-white colony...Figure 4A). Sequencing of the mutant supF genes , revealed a mutation spectrum consistent with error prone TLS (Supplemental Table 1). Significantly

Mobile Assisted Security in Wireless Sensor Networks

DTIC Science & Technology

2015-08-03

server from Google’s DNS, Chromecast and the content server does the 3-way TCP Handshake which is followed by Client Hello and Server Hello TLS messages...utilized TLS v1.2, except NTP servers and google’s DNS server. In the TLS v1.2, after handshake, client and server sends Client Hello and Server Hello ...Messages in order. In Client Hello messages, client offers a list of Cipher Suites that it supports. Each Cipher Suite defines the key exchange algorithm

An in vitro biomechanical comparison of equine proximal interphalangeal joint arthrodesis techniques: an axial positioned dynamic compression plate and two abaxial transarticular cortical screws inserted in lag fashion versus three parallel transarticular cortical screws inserted in lag fashion.

PubMed

Sod, Gary A; Riggs, Laura M; Mitchell, Colin F; Hubert, Jeremy D; Martin, George S

2010-01-01

To compare in vitro monotonic biomechanical properties of an axial 3-hole, 4.5 mm narrow dynamic compression plate (DCP) using 5.5 mm cortical screws in conjunction with 2 abaxial transarticular 5.5 mm cortical screws inserted in lag fashion (DCP-TLS) with 3 parallel transarticular 5.5 mm cortical screws inserted in lag fashion (3-TLS) for the equine proximal interphalangeal (PIP) joint arthrodesis. Paired in vitro biomechanical testing of 2 methods of stabilizing cadaveric adult equine forelimb PIP joints. Cadaveric adult equine forelimbs (n=15 pairs). For each forelimb pair, 1 PIP joint was stabilized with an axial 3-hole narrow DCP (4.5 mm) using 5.5 mm cortical screws in conjunction with 2 abaxial transarticular 5.5 mm cortical screws inserted in lag fashion and 1 with 3 parallel transarticular 5.5 mm cortical screws inserted in lag fashion. Five matching pairs of constructs were tested in single cycle to failure under axial compression, 5 construct pairs were tested for cyclic fatigue under axial compression, and 5 construct pairs were tested in single cycle to failure under torsional loading. Mean values for each fixation method were compared using a paired t-test within each group with statistical significance set at P<.05. Mean yield load, yield stiffness, and failure load under axial compression and torsion, single cycle to failure, of the DCP-TLS fixation were significantly greater than those of the 3-TLS fixation. Mean cycles to failure in axial compression of the DCP-TLS fixation was significantly greater than that of the 3-TLS fixation. The DCP-TLS was superior to the 3-TLS in resisting the static overload forces and in resisting cyclic fatigue. The results of this in vitro study may provide information to aid in the selection of a treatment modality for arthrodesis of the equine PIP joint.

A scalable and multi-purpose point cloud server (PCS) for easier and faster point cloud data management and processing

NASA Astrophysics Data System (ADS)

Cura, Rémi; Perret, Julien; Paparoditis, Nicolas

2017-05-01

In addition to more traditional geographical data such as images (rasters) and vectors, point cloud data are becoming increasingly available. Such data are appreciated for their precision and true three-Dimensional (3D) nature. However, managing point clouds can be difficult due to scaling problems and specificities of this data type. Several methods exist but are usually fairly specialised and solve only one aspect of the management problem. In this work, we propose a comprehensive and efficient point cloud management system based on a database server that works on groups of points (patches) rather than individual points. This system is specifically designed to cover the basic needs of point cloud users: fast loading, compressed storage, powerful patch and point filtering, easy data access and exporting, and integrated processing. Moreover, the proposed system fully integrates metadata (like sensor position) and can conjointly use point clouds with other geospatial data, such as images, vectors, topology and other point clouds. Point cloud (parallel) processing can be done in-base with fast prototyping capabilities. Lastly, the system is built on open source technologies; therefore it can be easily extended and customised. We test the proposed system with several billion points obtained from Lidar (aerial and terrestrial) and stereo-vision. We demonstrate loading speeds in the ˜50 million pts/h per process range, transparent-for-user and greater than 2 to 4:1 compression ratio, patch filtering in the 0.1 to 1 s range, and output in the 0.1 million pts/s per process range, along with classical processing methods, such as object detection.

Mapping Fearscapes of a Mammalian Herbivore using Terrestrial LiDAR and UAV Imagery

NASA Astrophysics Data System (ADS)

Olsoy, P.; Nobler, J. D.; Forbey, J.; Rachlow, J. L.; Burgess, M. A.; Glenn, N. F.; Shipley, L. A.

2013-12-01

Concealment allows prey animals to remain hidden from a predator and can influence both real and perceived risks of predation. The heterogeneous nature of vegetative structure can create a variable landscape of concealment - a 'fearscape' - that may influence habitat quality and use by prey. Traditional measurements of concealment rely on a limited number of distances, heights, and vantage points, resulting in small snapshots of concealment available to a prey animal. Our objective was to demonstrate the benefits of emerging remote sensing techniques to map fearscapes for pygmy rabbits (Brachylagus idahoensis) in sagebrush steppe habitat across a continuous range of scales. Specifically, we used vegetation height rasters derived from terrestrial laser scanning (TLS) to create viewsheds from multiple vantage points, representing predator visibility. The sum of all the viewsheds modeled horizontal concealment of prey at both the shrub and patch scales. We also used a small, unmanned aerial vehicle (UAV) to determine vertical concealment at a habitat scale. Terrestrial laser scanning provided similar estimates of horizontal concealment at the shrub scale when compared to photographic methods (R2 = 0.85). Both TLS and UAV provide the potential to quantify concealment of prey from multiple distances, heights, or vantage points, allowing the creation of a manipulable fearscape map that can be correlated with habitat use by prey animals. The predictive power of such a map also could identify shrubs or patches for fine scale nutritional and concealment analysis for future investigation and conservation efforts. Fearscape map at the mound-scale. Viewsheds were calculated from 100 equally spaced observer points located 4 m from the closest on-mound sagebrush of interest. Red areas offer low concealment, while green areas provide high concealment.

Fast calculation method of computer-generated hologram using a depth camera with point cloud gridding

NASA Astrophysics Data System (ADS)

Zhao, Yu; Shi, Chen-Xiao; Kwon, Ki-Chul; Piao, Yan-Ling; Piao, Mei-Lan; Kim, Nam

2018-03-01

We propose a fast calculation method for a computer-generated hologram (CGH) of real objects that uses a point cloud gridding method. The depth information of the scene is acquired using a depth camera and the point cloud model is reconstructed virtually. Because each point of the point cloud is distributed precisely to the exact coordinates of each layer, each point of the point cloud can be classified into grids according to its depth. A diffraction calculation is performed on the grids using a fast Fourier transform (FFT) to obtain a CGH. The computational complexity is reduced dramatically in comparison with conventional methods. The feasibility of the proposed method was confirmed by numerical and optical experiments.

Emerging role of rasburicase in the management of increased plasma uric acid levels in patients with hematologic malignancies

PubMed Central

Kennedy, LeAnne D; Koontz, Susannah; Rao, Kamakshi

2011-01-01

Tumor lysis syndrome (TLS) is defined as a group of metabolic derangements that result from the massive and abrupt release of cellular components into the bloodstream after rapid lysis of tumor cells. Breakdown of released materials leads to a number of electrolyte abnormalities, including elevated uric acid concentrations in the blood (hyperuricemia), which carries potentially serious consequences. The diagnosis, prevention, and management of TLS is complicated by variability in definitions, differences in risk factors based on patient- and tumor-specific characteristics, and practitioner preferences in terms of pharmaceutical management strategies. The best prevention and management option for a particular patient depends on the patient’s baseline risk for TLS development, the severity of symptoms in the event of TLS development, practical management considerations, and financial implications of treatment. PMID:22287858

Entrapping ribosomes for viral translation: tRNA mimicry as a molecular Trojan horse.

PubMed

Barends, Sharief; Bink, Hugo H J; van den Worm, Sjoerd H E; Pleij, Cornelis W A; Kraal, Barend

2003-01-10

Turnip yellow mosaic virus (TYMV) has a genomic plus-strand RNA with a 5' cap followed by overlapping and different reading frames for the movement protein and polyprotein, while the distal coat protein cistron is translated from a subgenomic RNA. The 3'-untranslated region harbors a tRNA-like structure (TLS) to which a valine moiety can be added and it is indispensable for virus viability. Here, we report about a surprising interaction between TYMV-RNA-programmed ribosomes and 3'-valylated TLS that yields polyprotein with the valine N terminally incorporated by a translation mechanism resistant to regular initiation inhibitors. Disruption of the TLS exclusively abolishes polyprotein synthesis, which can be restored by adding excess TLS in trans. Our observations imply a novel eukaryotic mechanism for internal initiation of mRNA translation.

Management of pediatric tumor lysis syndrome.

PubMed

Tazi, Illias; Nafl, Hatim; Elhoudzi, Jamila; Mahmal, Lahoucine; Harif, Mhamed

2011-09-01

Tumor lysis syndrome (TLS) is a serious complication of malignancies and can result in renal failure or death. In tumors with a high proliferative rate with a relatively large mass and a high sensitivity to cytotoxic agents, the initiation of therapy often results in the rapid release of intracellular anions, cations and the metabolic products of proteins and nucleic acids into the bloodstream. The increased concentrations of uric acid, phosphates, potassium and urea can overwhelm the body's homeostatic mechanisms to process and excrete these materials and result in the clinical spectrum associated with TLS. Typical clinical sequelae include gastrointestinal disturbances, neuromuscular effects, cardiovascular complications, acute renal failure and death. Tumor lysis syndrome can also compromise the efficacy or administration of curative therapies. Available evidence suggests that the incidence of clinical TLS is approximately 3-7% for acute leukemias and 4-11% for lymphomas. Pediatric cancers are the leading cause of death by disease in children. The most common pediatric cancers include the leukemias, lymphomas, central nervous system tumors and neuroblastoma. Thus, TLS is a major concern to practitioners caring for pediatric oncology patients. Given the complexity of TLS prevention and treatment, a multidisciplinary approach involving the collaboration of medical oncologists/ hematologists and nephrologists has the greatest potential of ensuring optimal patient outcomes. Rehydration is fundamental in the management of TLS in addition to the current standard therapy for hyperuricemia which include rasburicase and allopurinol. The early recognition and treatment of metabolic abnormalities often prevents the severe and life-threatening complications associated with tumor lysis syndrome.

Roles of PCNA ubiquitination and TLS polymerases κ and η in the bypass of methyl methanesulfonate-induced DNA damage.

PubMed

Wit, Niek; Buoninfante, Olimpia Alessandra; van den Berk, Paul C M; Jansen, Jacob G; Hogenbirk, Marc A; de Wind, Niels; Jacobs, Heinz

2015-01-01

Translesion synthesis (TLS) provides a highly conserved mechanism that enables DNA synthesis on a damaged template. TLS is performed by specialized DNA polymerases of which polymerase (Pol) κ is important for the cellular response to DNA damage induced by benzo[a]pyrene-7,8-dihydrodiol-9,10-epoxide (BPDE), ultraviolet (UV) light and the alkylating agent methyl methanesulfonate (MMS). As TLS polymerases are intrinsically error-prone, tight regulation of their activity is required. One level of control is provided by ubiquitination of the homotrimeric DNA clamp PCNA at lysine residue 164 (PCNA-Ub). We here show that Polκ can function independently of PCNA modification and that Polη can function as a backup during TLS of MMS-induced lesions. Compared to cell lines deficient for PCNA modification (Pcna(K164R)) or Polκ, double mutant cell lines display hypersensitivity to MMS but not to BPDE or UV-C. Double mutant cells also displayed delayed post-replicative TLS, accumulate higher levels of replication stress and delayed S-phase progression. Furthermore, we show that Polη and Polκ are redundant in the DNA damage bypass of MMS-induced DNA damage. Taken together, we provide evidence for PCNA-Ub-independent activation of Polκ and establish Polη as an important backup polymerase in the absence of Polκ in response to MMS-induced DNA damage. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Nucks1 synergizes with Trp53 to promote radiation lymphomagenesis in mice

PubMed Central

Yue, Yangbo; Leung, Stanley G.; Liu, Yueyong; Huang, Yurong; Grundt, Kirsten; Østvold, Anne-Carine; Jen, Kuang-Yu; Schild, David; Mao, Jian-Hua; Wiese, Claudia

2016-01-01

NUCKS1 is a 27 kD vertebrate-specific protein, with a role in the DNA damage response. Here, we show that after 4 Gy total-body X-irradiation, Trp53+/− Nucks1+/− mice more rapidly developed tumors, particularly thymic lymphoma (TL), than Trp53+/− mice. TLs in both cohorts showed loss of heterozygosity (LOH) of the Trp53+ allele in essentially all cases. In contrast, LOH of the Nucks1+ allele was rare. Nucks1 expression correlated well with Nucks1 gene dosage in normal thymi, but was increased in the majority of TLs from Trp53+/− Nucks1+/− mice, suggesting that elevated Nucks1 message may be associated with progression towards malignancy in vivo. Trp53+/− Nucks1+/− mice frequently succumbed to CD4- CD8- TLs harboring translocations involving Igh but not Tcra/d, indicating TLs in Trp53+/− Nucks1+/− mice mostly originated prior to the double positive stage and at earlier lineage than TLs in Trp53+/- mice. Monoclonal rearrangements at Tcrb were more prevalent in TLs from Trp53+/− Nucks1+/− mice, as was infiltration of primary TL cells to distant organs (liver, kidney and spleen). We propose that, in the context of Trp53 deficiency, wild type levels of Nucks1 are required to suppress radiation-induced TL, likely through the role of the NUCKS1 protein in the DNA damage response. PMID:27542204

Comparison of UAV and TLS DTMs for acquisition of geological, geomorphological information for Doren landslide, Vorarlberg Austria

NASA Astrophysics Data System (ADS)

Koma, Zsófia; Székely, Balázs; Dorninger, Peter; Rasztovits, Sascha; Roncat, Andreas; Zámolyi, András; Krawczyk, Dominik; Pfeifer, Norbert

2014-05-01

Aerial imagery derivatives collected by the Unmanned Aerial Vehicle (UAV) technology can be used as input for generation of high resolution digital terrain model (DTM) data along with the Terrestrial Laser Scanning (TLS) method. Both types of datasets are suitable for detailed geological and geomorphometric analysis, because the data provide micro-topographical and structural geological information. Our study focuses on the comparison of the possibilities of the extracted geological information, which is available from high resolution DTMs. This research attempts to find an answer which technology is more effective for geological and geomorphological analysis. The measurements were taken at the Doren landslide (Vorarlberg, Austria), a complex rotational land slide situated in the Alpine molasse foreland. Several formations (Kojen Formation, Würmian glacial moraine sediments, Weissach Formation) were tectonized there in the course of the alpine orogeny (Oberhauser et al, 2007). The typical fault direction is WSW-ENE. The UAV measurements that were carried out simultaneously with the TLS campaign focused on the landslide scarp. The original image resolution was 4 mm/pixel. Image matching was implemented in pyramid level 2 and the achieved resolution of the DTM was 0.05 meter. The TLS dataset includes 18 scan positions and more than 300 million points for the whole landslide area. The achieved DTM has 0.2 meter resolution. The steps of the geological and geomorphological analysis were: (1) visual interpretation based on field work and geological maps, (2) quantitative DTM analysis. In the quantitative analysis input data provided by the different kinds of DTMs were used for further parameter calculations (e.g. slope, aspect, sigmaZ). In the next step an automatic classification method was used for the detection of faults and classification of different parts of the landslide. The conclusion was that for geological visualization interpretation UAV datasets are better, because the high resolution texture information allows for the extraction of the digital geomorphology indicators. For quantitative analysis both datasets are informative, but the TLS DTM has an advantage of accessing additional information on faults beneath the vegetation cover. These studies were carried out partly in the framework of Hybrid 3D project financed by the Austrian Research Promotion Agency (FFG) and Von-Oben and 4D-IT; the contribution of ZsK was partly funded by Campus Hungary Internship TÁMOP-424B1; BSz contributed partly as an Alexander von Humboldt Research Fellow.

Processing Uav and LIDAR Point Clouds in Grass GIS

NASA Astrophysics Data System (ADS)

Petras, V.; Petrasova, A.; Jeziorska, J.; Mitasova, H.

2016-06-01

Today's methods of acquiring Earth surface data, namely lidar and unmanned aerial vehicle (UAV) imagery, non-selectively collect or generate large amounts of points. Point clouds from different sources vary in their properties such as number of returns, density, or quality. We present a set of tools with applications for different types of points clouds obtained by a lidar scanner, structure from motion technique (SfM), and a low-cost 3D scanner. To take advantage of the vertical structure of multiple return lidar point clouds, we demonstrate tools to process them using 3D raster techniques which allow, for example, the development of custom vegetation classification methods. Dense point clouds obtained from UAV imagery, often containing redundant points, can be decimated using various techniques before further processing. We implemented and compared several decimation techniques in regard to their performance and the final digital surface model (DSM). Finally, we will describe the processing of a point cloud from a low-cost 3D scanner, namely Microsoft Kinect, and its application for interaction with physical models. All the presented tools are open source and integrated in GRASS GIS, a multi-purpose open source GIS with remote sensing capabilities. The tools integrate with other open source projects, specifically Point Data Abstraction Library (PDAL), Point Cloud Library (PCL), and OpenKinect libfreenect2 library to benefit from the open source point cloud ecosystem. The implementation in GRASS GIS ensures long term maintenance and reproducibility by the scientific community but also by the original authors themselves.

Chronology in lesion tolerance gives priority to genetic variability

PubMed Central

Naiman, Karel; Philippin, Gaëlle; Fuchs, Robert P.; Pagès, Vincent

2014-01-01

The encounter of a replication fork with a blocking DNA lesion is a common event that cells need to address properly to preserve genome integrity. Cells possess two main strategies to tolerate unrepaired lesions: potentially mutagenic translesion synthesis (TLS) and nonmutagenic damage avoidance (DA). Little is known about the partitioning between these two strategies. Because genes involved in DA mechanisms (i.e., recA) are expressed early and genes involved in TLS (i.e., Pol V) are expressed late during the bacterial SOS response, it has long been thought that TLS was the last recourse to bypass DNA lesions when repair and nonmutagenic DA mechanisms have failed. By using a recently described methodology, we followed the fate of a single replication-blocking lesion introduced in the Escherichia coli genome during acute genotoxic stress. We show that lesion tolerance events (i) only occur when the SOS response is fully induced and (ii) are executed in chronological order, with TLS coming first, followed by DA. Therefore, in response to genotoxic stress, bacterial cells give priority to TLS, a minor pathway able to generate genetic diversity before implementing the major nonmutagenic pathway that ensures survival. PMID:24706928

From deep TLS validation to ensembles of atomic models built from elemental motions

DOE PAGES

Urzhumtsev, Alexandre; Afonine, Pavel V.; Van Benschoten, Andrew H.; ...

2015-07-28

The translation–libration–screw model first introduced by Cruickshank, Schomaker and Trueblood describes the concerted motions of atomic groups. Using TLS models can improve the agreement between calculated and experimental diffraction data. Because the T, L and S matrices describe a combination of atomic vibrations and librations, TLS models can also potentially shed light on molecular mechanisms involving correlated motions. However, this use of TLS models in mechanistic studies is hampered by the difficulties in translating the results of refinement into molecular movement or a structural ensemble. To convert the matrices into a constituent molecular movement, the matrix elements must satisfy severalmore » conditions. Refining the T, L and S matrix elements as independent parameters without taking these conditions into account may result in matrices that do not represent concerted molecular movements. Here, a mathematical framework and the computational tools to analyze TLS matrices, resulting in either explicit decomposition into descriptions of the underlying motions or a report of broken conditions, are described. The description of valid underlying motions can then be output as a structural ensemble. All methods are implemented as part of the PHENIX project.« less

Retrieval of effective leaf area index (LAIe) and leaf area density (LAD) profile at individual tree level using high density multi-return airborne LiDAR

NASA Astrophysics Data System (ADS)

Lin, Yi; West, Geoff

2016-08-01

As an important canopy structure indicator, leaf area index (LAI) proved to be of considerable implications for forest ecosystem and ecological studies, and efficient techniques for accurate LAI acquisitions have long been highlighted. Airborne light detection and ranging (LiDAR), often termed as airborne laser scanning (ALS), once was extensively investigated for this task but showed limited performance due to its low sampling density. Now, ALS systems exhibit more competing capacities such as high density and multi-return sampling, and hence, people began to ask the questions like-;can ALS now work better on the task of LAI prediction?; As a re-examination, this study investigated the feasibility of LAI retrievals at the individual tree level based on high density and multi-return ALS, by directly considering the vertical distributions of laser points lying within each tree crown instead of by proposing feature variables such as quantiles involving laser point distribution modes at the plot level. The examination was operated in the case of four tree species (i.e. Picea abies, Pinus sylvestris, Populus tremula and Quercus robur) in a mixed forest, with their LAI-related reference data collected by using static terrestrial laser scanning (TLS). In light of the differences between ALS- and TLS-based LAI characterizations, the methods of voxelization of 3D scattered laser points, effective LAI (LAIe) that does not distinguish branches from canopies and unified cumulative LAI (ucLAI) that is often used to characterize the vertical profiles of crown leaf area densities (LADs) was used; then, the relationships between the ALS- and TLS-derived LAIes were determined, and so did ucLAIs. Tests indicated that the tree-level LAIes for the four tree species can be estimated based on the used airborne LiDAR (R2 = 0.07, 0.26, 0.43 and 0.21, respectively) and their ucLAIs can also be derived. Overall, this study has validated the usage of the contemporary high density multi-return airborne LiDARs for LAIe and LAD profile retrievals at the individual tree level, and the contribution are of high potential for advancing forest ecosystem modeling and ecological understanding.

a Global Registration Algorithm of the Single-Closed Ring Multi-Stations Point Cloud

NASA Astrophysics Data System (ADS)

Yang, R.; Pan, L.; Xiang, Z.; Zeng, H.

2018-04-01

Aimed at the global registration problem of the single-closed ring multi-stations point cloud, a formula in order to calculate the error of rotation matrix was constructed according to the definition of error. The global registration algorithm of multi-station point cloud was derived to minimize the error of rotation matrix. And fast-computing formulas of transformation matrix with whose implementation steps and simulation experiment scheme was given. Compared three different processing schemes of multi-station point cloud, the experimental results showed that the effectiveness of the new global registration method was verified, and it could effectively complete the global registration of point cloud.

Generation of Ground Truth Datasets for the Analysis of 3d Point Clouds in Urban Scenes Acquired via Different Sensors

NASA Astrophysics Data System (ADS)

Xu, Y.; Sun, Z.; Boerner, R.; Koch, T.; Hoegner, L.; Stilla, U.

2018-04-01

In this work, we report a novel way of generating ground truth dataset for analyzing point cloud from different sensors and the validation of algorithms. Instead of directly labeling large amount of 3D points requiring time consuming manual work, a multi-resolution 3D voxel grid for the testing site is generated. Then, with the help of a set of basic labeled points from the reference dataset, we can generate a 3D labeled space of the entire testing site with different resolutions. Specifically, an octree-based voxel structure is applied to voxelize the annotated reference point cloud, by which all the points are organized by 3D grids of multi-resolutions. When automatically annotating the new testing point clouds, a voting based approach is adopted to the labeled points within multiple resolution voxels, in order to assign a semantic label to the 3D space represented by the voxel. Lastly, robust line- and plane-based fast registration methods are developed for aligning point clouds obtained via various sensors. Benefiting from the labeled 3D spatial information, we can easily create new annotated 3D point clouds of different sensors of the same scene directly by considering the corresponding labels of 3D space the points located, which would be convenient for the validation and evaluation of algorithms related to point cloud interpretation and semantic segmentation.

Echo spectroscopy of TLS of multiwell adiabatic potential for Pr3+ activator centers in Y2SiO5

NASA Astrophysics Data System (ADS)

Malyukin, Yuri V.; Borysov, R. S.; Zhmurin, P. N.; Lebedenko, A. N.; Grinyov, Boris V.; Znamenskii, N. I.; Manykin, Eduard A.; Orlov, Yu. V.; Petrenko, E. A.; Yukina, T. G.

2002-05-01

Based on the investigation of the temperature dependence of the two-pulse phonon echo amplitude on the 3H4 3Po resonant optical transition of the Pr3+ doped ions in the Y2SiO5 crystal, unusual for crystals, low-temperature mechanisms of Pr3+ spectral line broadening caused by the interaction of doped ions with TLS have been found. The constants characterizing the interaction of the doped Pr3+ ions with phonons and TLS have been determined.

The One to Multiple Automatic High Accuracy Registration of Terrestrial LIDAR and Optical Images

NASA Astrophysics Data System (ADS)

Wang, Y.; Hu, C.; Xia, G.; Xue, H.

2018-04-01

The registration of ground laser point cloud and close-range image is the key content of high-precision 3D reconstruction of cultural relic object. In view of the requirement of high texture resolution in the field of cultural relic at present, The registration of point cloud and image data in object reconstruction will result in the problem of point cloud to multiple images. In the current commercial software, the two pairs of registration of the two kinds of data are realized by manually dividing point cloud data, manual matching point cloud and image data, manually selecting a two - dimensional point of the same name of the image and the point cloud, and the process not only greatly reduces the working efficiency, but also affects the precision of the registration of the two, and causes the problem of the color point cloud texture joint. In order to solve the above problems, this paper takes the whole object image as the intermediate data, and uses the matching technology to realize the automatic one-to-one correspondence between the point cloud and multiple images. The matching of point cloud center projection reflection intensity image and optical image is applied to realize the automatic matching of the same name feature points, and the Rodrigo matrix spatial similarity transformation model and weight selection iteration are used to realize the automatic registration of the two kinds of data with high accuracy. This method is expected to serve for the high precision and high efficiency automatic 3D reconstruction of cultural relic objects, which has certain scientific research value and practical significance.

Flow around an individual morphologically complex plant: investigating the role of plant aspect in the numerical prediction of complex river flow

NASA Astrophysics Data System (ADS)

Boothroyd, R.; Hardy, R. J.; Warburton, J.; Marjoribanks, T.

2015-12-01

Aquatic vegetation has a significant influence on the hydraulic functioning of river systems. Plant morphology has previously been shown to alter the mean and turbulent properties of flow, influenced by the spatial distribution of branches and foliage, and these effects can be further investigated through numerical models. We report on a novel method for the measurement and incorporation of complex plant morphologies into a computational fluid dynamics (CFD) model. The morphological complexity of Prunus laurocerasus is captured under foliated and defoliated states through terrestrial laser scanning (TLS). Point clouds are characterised by a voxelised representation and incorporated into a CFD scheme using a mass flux scaling algorithm, allowing the numerical prediction of flows around individual plants. Here we examine the sensitivity of plant aspect, i.e. the positioning of the plant relative to the primary flow direction, by rotating the voxelised plant representation through 15° increments (24 rotations) about the vertical axis. This enables the impact of plant aspect to be quantified upon the velocity and pressure fields, and in particular how this effects species-specific drag forces and drag coefficients. Plant aspect is shown to considerably influence the flow field response, producing spatially heterogeneous downstream velocity fields with both symmetric and asymmetric wake shapes, and point of reattachments that extend up to seven plant lengths downstream. For the same plant, changes in aspect are shown to account for a maximum variation in drag force of 168%, which equates to a 65% difference in the drag coefficient. An explicit consideration of plant aspect is therefore important in studies concerning flow-vegetation interactions, especially when reducing the uncertainty in parameterising the effect of vegetation in numerical models.

Using TLS to Improve Models of Volcano Conduit Processes (Invited)

NASA Astrophysics Data System (ADS)

Connor, C.; Connor, L.

2010-12-01

In volcanology, diverse numerical models of conduit flow have been developed to relate the properties of these flows to processes that occur at the surface during eruptions. Conduit models incorporate varying degrees of complexity and account for the transport properties of magmas, steady-state or transient behavior, and conduit geometry (e.g., 1- to 1.5 D, variable width and erodable conduit walls). Improvement of these models is important if we are to work toward deployment of eruption models at active volcanoes, link these models to geophysical observations (seismic, deformation, gravity) and eventually forecast eruption magnitude. One conclusion of a recent comparison of many conduit models is that next generation models need to better account for interaction of the erupting mixture with surrounding wall rocks (accounting for melting, solidification, and erosion) and better account for the effects of conduit shape on flows. We made progress toward accounting for this interaction by using TLS to map basaltic conduits in a deeply eroded volcanic field, the San Rafael volcanic field, Utah. TLS data were collected with UNAVCO support during a field campaign in summer 2010. A region of approximately 1 x 1 km was imaged from 9 TLS stations. TLS data reveal the exact geometries of several exposed conduits, their relationship to sills and dikes, and dramatic change in reflectivity of the Entrada sandstone country rock with alteration. The TLS data are particularly good for (a) quantifying rapid change in conduit shape and area as a function of height, (b) differentiating breccias zones (complex mixing zones along conduit margins) from areas of late stage intrusion, (c) imaging complexity of sill geometry near conduits, illustrating the mechanical and perhaps geochemical interaction between sills and conduits in volcanic fields. Overall, application of TLS in this volcanic field has resulted in substantial improvement in our models of volcanic conduit formation, growth, and interaction with shallow magma storage systems.

DNA Polymerase ζ is essential for hexavalent chromium-induced mutagenesis

PubMed Central

O'Brien, Travis J.; Witcher, Preston; Brooks, Bradford; Patierno, Steven R.

2009-01-01

Translesion synthesis (TLS) is a unique DNA damage tolerance mechanism involved in the replicative bypass of genetic lesions in favor of uninterrupted DNA replication. TLS is critical for the generation of mutations by many different chemical and physical agents, however, there is no information available regarding the role of TLS in carcinogenic metal-induced mutagenesis. Hexavalent chromium (Cr(VI))-containing compounds are highly complex genotoxins possessing both mutagenic and clastogenic activities. The focus of this work was to determine the impact that TLS has on Cr(VI)-induced mutagenesis in S. cerevisiae. Wild-type yeast and strains deficient in TLS polymerases (i.e. Polζ (rev3), Polη (rad30)) were exposed to Cr(VI) and monitored for cell survival and forward mutagenesis at the CAN1 locus. In general, TLS deficiency had little impact on Cr(VI)-induced clonogenic lethality or cell growth. rad30 yeast exhibited higher levels of basal and induced mutagenesis compared to Wt and rev3 yeast. In contrast, rev3 yeast displayed attenuated Cr(VI)-induced mutagenesis. Moreover, deletion of REV3 in rad30 yeast (rad30 rev3) resulted in a significant decrease in basal and Cr(VI) mutagenesis relative to Wt and rad30 single mutants indicating that mutagenesis primarily depended upon Polζ. Interestingly, rev3 yeast were similar to Wt yeast in susceptibility to Cr(VI)-induced frameshift mutations. Mutational analysis of the CAN1 gene revealed that Cr(VI)-induced base substitution mutations accounted for 83.9% and 100.0% of the total mutations in Wt and rev3 yeast, respectively. Insertions and deletions comprised 16.1% of the total mutations in Cr(VI) treated Wt yeast but were not observed rev3 yeast. This work provides novel information regarding the molecular mechanisms of Cr(VI)-induced mutagenesis and is the first report demonstrating a role for TLS in the fixation of mutations induced by a carcinogenic metal. PMID:19428373

NMR Structure and Dynamics of the C-terminal Domain from Human Rev1 and its Complex with Rev1 Interacting Region of DNA Polymerase η

PubMed Central

Pozhidaeva, Alexandra; Pustovalova, Yulia; D'Souza, Sanjay; Bezsonova, Irina; Walker, Graham C.; Korzhnev, Dmitry M.

2013-01-01

Rev1 is a translesion synthesis (TLS) DNA polymerase essential for DNA damage tolerance in eukaryotes. In the process of TLS stalled high-fidelity replicative DNA polymerases are temporarily replaced by specialized TLS enzymes that can bypass sites of DNA damage (lesions), thus allowing replication to continue or postreplicational gaps to be filled. Despite its limited catalytic activity, human Rev1 plays a key role in TLS by serving as a scaffold that provides an access of Y-family TLS polymerases polη, ι, and κ to their cognate DNA lesions and facilitates their subsequent exchange to polζ that extends the distorted DNA primer-template. Rev1 interaction with the other major human TLS polymerases, polη, ι, κ and the regulatory subunit Rev7 of polζ, is mediated by Rev1 C-terminal domain (Rev1-CT). We used NMR spectroscopy to determine the spatial structure of the Rev1-CT domain (residues 1157-1251) and its complex with Rev1 interacting region (RIR) from polη (residues 524-539). The domain forms a four-helix bundle with a well-structured N-terminal β-hairpin docking against helices 1 and 2, creating a binding pocket for the two conserved Phe residues of the RIR motif that upon binding folds into an α-helix. NMR spin-relaxation and NMR relaxation dispersion measurements suggest that free Rev1-CT and Rev1-CT/polη-RIR complex exhibit μs-ms conformational dynamics encompassing the RIR binding site, which might facilitate selection of the molecular configuration optimal for binding. These results offer new insights into the control of TLS in human cells by providing a structural basis for understanding the recognition of the Rev1-CT by Y-family DNA polymerases. PMID:22691049

An Approach of Web-based Point Cloud Visualization without Plug-in

NASA Astrophysics Data System (ADS)

Ye, Mengxuan; Wei, Shuangfeng; Zhang, Dongmei

2016-11-01

With the advances in three-dimensional laser scanning technology, the demand for visualization of massive point cloud is increasingly urgent, but a few years ago point cloud visualization was limited to desktop-based solutions until the introduction of WebGL, several web renderers are available. This paper addressed the current issues in web-based point cloud visualization, and proposed a method of web-based point cloud visualization without plug-in. The method combines ASP.NET and WebGL technologies, using the spatial database PostgreSQL to store data and the open web technologies HTML5 and CSS3 to implement the user interface, a visualization system online for 3D point cloud is developed by Javascript with the web interactions. Finally, the method is applied to the real case. Experiment proves that the new model is of great practical value which avoids the shortcoming of the existing WebGIS solutions.

Model for Semantically Rich Point Cloud Data

NASA Astrophysics Data System (ADS)

Poux, F.; Neuville, R.; Hallot, P.; Billen, R.

2017-10-01

This paper proposes an interoperable model for managing high dimensional point clouds while integrating semantics. Point clouds from sensors are a direct source of information physically describing a 3D state of the recorded environment. As such, they are an exhaustive representation of the real world at every scale: 3D reality-based spatial data. Their generation is increasingly fast but processing routines and data models lack of knowledge to reason from information extraction rather than interpretation. The enhanced smart point cloud developed model allows to bring intelligence to point clouds via 3 connected meta-models while linking available knowledge and classification procedures that permits semantic injection. Interoperability drives the model adaptation to potentially many applications through specialized domain ontologies. A first prototype is implemented in Python and PostgreSQL database and allows to combine semantic and spatial concepts for basic hybrid queries on different point clouds.

Error-free replicative bypass of (6–4) photoproducts by DNA polymerase ζ in mouse and human cells

PubMed Central

Yoon, Jung-Hoon; Prakash, Louise; Prakash, Satya

2010-01-01

The ultraviolet (UV)-induced (6–4) pyrimidine–pyrimidone photoproduct [(6–4) PP] confers a large structural distortion in DNA. Here we examine in human cells the roles of translesion synthesis (TLS) DNA polymerases (Pols) in promoting replication through a (6–4) TT photoproduct carried on a duplex plasmid where bidirectional replication initiates from an origin of replication. We show that TLS contributes to a large fraction of lesion bypass and that it is mostly error-free. We find that, whereas Pol η and Pol ι provide alternate pathways for mutagenic TLS, surprisingly, Pol ζ functions independently of these Pols and in a predominantly error-free manner. We verify and extend these observations in mouse cells and conclude that, in human cells, TLS during replication can be markedly error-free even opposite a highly distorting DNA lesion. PMID:20080950

Can CT imaging of the chest, abdomen, and pelvis identify all vertebral injuries of the thoracolumbar spine without dedicated reformatting?

PubMed

Imran, Jonathan B; Madni, Tarik D; Pruitt, Jeffrey H; Cornelius, Canon; Subramanian, Madhu; Clark, Audra T; Mokdad, Ali A; Rizk, Paul; Minei, Joseph P; Cripps, Michael W; Eastman, Alexander L

2018-07-01

The main objective of this study was to compare detection rates of clinically significant thoracolumbar spine (TLS) fracture between computed tomography (CT) imaging of the chest, abdomen, and spine (CT CAP) and CT for the thoracolumbar spine (CT TL). We retrospectively identified patients at our institution with a TLS fracture over a two-year period that had both CT CAP and reformatted CT TL imaging. The sensitivity of CT CAP to identify fracture was calculated for each fracture type. A total of 516 TLS fractures were identified in 125 patients using reformatted CT TL spine imaging. Overall, 69 of 512 fractures (13%) were missed on CT CAP that were identified on CT TL. Of those, there were no clinically significant missed fractures. CT CAP could potentially be used as a screening tool for clinically significant TLS injuries. Copyright © 2017 Elsevier Inc. All rights reserved.

Self-Similar Spin Images for Point Cloud Matching

NASA Astrophysics Data System (ADS)

Pulido, Daniel

The rapid growth of Light Detection And Ranging (Lidar) technologies that collect, process, and disseminate 3D point clouds have allowed for increasingly accurate spatial modeling and analysis of the real world. Lidar sensors can generate massive 3D point clouds of a collection area that provide highly detailed spatial and radiometric information. However, a Lidar collection can be expensive and time consuming. Simultaneously, the growth of crowdsourced Web 2.0 data (e.g., Flickr, OpenStreetMap) have provided researchers with a wealth of freely available data sources that cover a variety of geographic areas. Crowdsourced data can be of varying quality and density. In addition, since it is typically not collected as part of a dedicated experiment but rather volunteered, when and where the data is collected is arbitrary. The integration of these two sources of geoinformation can provide researchers the ability to generate products and derive intelligence that mitigate their respective disadvantages and combine their advantages. Therefore, this research will address the problem of fusing two point clouds from potentially different sources. Specifically, we will consider two problems: scale matching and feature matching. Scale matching consists of computing feature metrics of each point cloud and analyzing their distributions to determine scale differences. Feature matching consists of defining local descriptors that are invariant to common dataset distortions (e.g., rotation and translation). Additionally, after matching the point clouds they can be registered and processed further (e.g., change detection). The objective of this research is to develop novel methods to fuse and enhance two point clouds from potentially disparate sources (e.g., Lidar and crowdsourced Web 2.0 datasets). The scope of this research is to investigate both scale and feature matching between two point clouds. The specific focus of this research will be in developing a novel local descriptor based on the concept of self-similarity to aid in the scale and feature matching steps. An open problem in fusion is how best to extract features from two point clouds and then perform feature-based matching. The proposed approach for this matching step is the use of local self-similarity as an invariant measure to match features. In particular, the proposed approach is to combine the concept of local self-similarity with a well-known feature descriptor, Spin Images, and thereby define "Self-Similar Spin Images". This approach is then extended to the case of matching two points clouds in very different coordinate systems (e.g., a geo-referenced Lidar point cloud and stereo-image derived point cloud without geo-referencing). The use of Self-Similar Spin Images is again applied to address this problem by introducing a "Self-Similar Keyscale" that matches the spatial scales of two point clouds. Another open problem is how best to detect changes in content between two point clouds. A method is proposed to find changes between two point clouds by analyzing the order statistics of the nearest neighbors between the two clouds, and thereby define the "Nearest Neighbor Order Statistic" method. Note that the well-known Hausdorff distance is a special case as being just the maximum order statistic. Therefore, by studying the entire histogram of these nearest neighbors it is expected to yield a more robust method to detect points that are present in one cloud but not the other. This approach is applied at multiple resolutions. Therefore, changes detected at the coarsest level will yield large missing targets and at finer levels will yield smaller targets.

Simultaneous colour visualizations of multiple ALS point cloud attributes for land cover and vegetation analysis

NASA Astrophysics Data System (ADS)

Zlinszky, András; Schroiff, Anke; Otepka, Johannes; Mandlburger, Gottfried; Pfeifer, Norbert

2014-05-01

LIDAR point clouds hold valuable information for land cover and vegetation analysis, not only in the spatial distribution of the points but also in their various attributes. However, LIDAR point clouds are rarely used for visual interpretation, since for most users, the point cloud is difficult to interpret compared to passive optical imagery. Meanwhile, point cloud viewing software is available allowing interactive 3D interpretation, but typically only one attribute at a time. This results in a large number of points with the same colour, crowding the scene and often obscuring detail. We developed a scheme for mapping information from multiple LIDAR point attributes to the Red, Green, and Blue channels of a widely used LIDAR data format, which are otherwise mostly used to add information from imagery to create "photorealistic" point clouds. The possible combinations of parameters are therefore represented in a wide range of colours, but relative differences in individual parameter values of points can be well understood. The visualization was implemented in OPALS software, using a simple and robust batch script, and is viewer independent since the information is stored in the point cloud data file itself. In our case, the following colour channel assignment delivered best results: Echo amplitude in the Red, echo width in the Green and normalized height above a Digital Terrain Model in the Blue channel. With correct parameter scaling (but completely without point classification), points belonging to asphalt and bare soil are dark red, low grassland and crop vegetation are bright red to yellow, shrubs and low trees are green and high trees are blue. Depending on roof material and DTM quality, buildings are shown from red through purple to dark blue. Erroneously high or low points, or points with incorrect amplitude or echo width usually have colours contrasting from terrain or vegetation. This allows efficient visual interpretation of the point cloud in planar, profile and 3D views since it reduces crowding of the scene and delivers intuitive contextual information. The resulting visualization has proved useful for vegetation analysis for habitat mapping, and can also be applied as a first step for point cloud level classification. An interactive demonstration of the visualization script is shown during poster attendance, including the opportunity to view your own point cloud sample files.

Application and validation of long-range terrestrial laser scanning to monitor the mass balance of very small glaciers in the Swiss Alps

NASA Astrophysics Data System (ADS)

Fischer, Mauro; Huss, Matthias; Kummert, Mario; Hoelzle, Martin

2016-06-01

Due to the relative lack of empirical field data, the response of very small glaciers (here defined as being smaller than 0.5 km2) to current atmospheric warming is not fully understood yet. Investigating their mass balance, e.g. using the direct glaciological method, is a prerequisite to fill this knowledge gap. Terrestrial laser scanning (TLS) techniques operating in the near infrared range can be applied for the creation of repeated high-resolution digital elevation models and consecutive derivation of annual geodetic mass balances of very small glaciers. This method is promising, as laborious and potentially dangerous field measurements as well as the inter- and extrapolation of point measurements can be circumvented. However, it still needs to be validated. Here, we present TLS-derived annual surface elevation and geodetic mass changes for five very small glaciers in Switzerland (Glacier de Prapio, Glacier du Sex Rouge, St. Annafirn, Schwarzbachfirn, and Pizolgletscher) and two consecutive years (2013/14-2014/15). The scans were acquired with a long-range Riegl -6000 especially designed for surveying snow- and ice-covered terrain. Zonally variable conversion factors for firn and bare ice surfaces were applied to convert geodetic volume to mass changes. We compare the geodetic results to direct glaciological mass balance measurements coinciding with the TLS surveys and assess the uncertainties and errors included in both methods. Average glacier-wide mass balances were negative in both years, showing stronger mass losses in 2014/15 (-1.65 m w.e.) compared to 2013/14 (-0.59 m w.e.). Geodetic mass balances were slightly less negative but in close agreement with the direct glaciological ones (R2 = 0.91). Due to the dense in situ measurements, the uncertainties in the direct glaciological mass balances were small compared to the majority of measured glaciers worldwide (±0.09 m w.e. yr-1 on average), and similar to uncertainties in the TLS-derived geodetic mass balances (±0.13 m w.e. yr-1).

A walk by the river: three-dimensional reconstruction of surface sedimentology and topography using wearable laser scanning

NASA Astrophysics Data System (ADS)

Williams, R.; Lamy, M. L.; Stott, E.; Maniatis, G.

2017-12-01

In the last two decades, quantification of fluvial topography has been transformed by a number of geomatics technologies that have enabled the acquisition of data with unprecedented spatial resolution. Hyperscale surveys with spatial extents of <1 km2 have been widely demonstrated, by means of Terrestrial Laser Scanning (TLS) and Structure-from-Motion (SfM) photogrammetry. Recent advances in the development and integration of GNSS, IMU, lightweight laser scanning and SLAM technologies are now resulting in the emergence of wearable, mobile laser scanning systems that have the potential to increase data acquisition and processing rates by 1-2 orders of magnitude compared to TLS/SfM, and thus challenge the recent dominance of these two geomatics technologies. In this study we describe the methods and results of a comparison between a wearable laser scanning survey, using a Leica Pegasus Backpack, and a multi-station static TLS survey, using a Riegl VZ-1000 scanner. The evaluation is undertaken on a 600 m long reach of the braided River Feshie, Scotland, using data acquired in June 2017. Comparison between the DEMs produced from static and mobile laser scanning, across non-vegetated areas, revealed a Mean Error (ME) of -0.002 m and a Standard Deviation Error (SDE) of 0.109 m. Comparison to 100 independent check point resulted in a similar ME and SDE for static (ME = 0.061m; SDE = 0.030 m) and mobile (ME = 0.044 m; SDE = 0.029 m) laser scanning. Empirical relationships between sub-metre topographic variability and median sediment grain size (10-100 mm), across 14 grid-by-number samples, were similar and demonstrate that surface roughness from wearable laser scanning can be used to derive reach-scale maps of median grain size. These results demonstrate that wearable laser scanning generates hyperscale topographic models that are comparable in quality to more time-consuming multi-station TLS setups. Wearable laser scanning is likely to be commonly adopted for fluvial topographic surveys and will become established as a versatile survey technology.

Febuxostat for management of tumor lysis syndrome including its effects on levels of purine metabolites in patients with hematological malignancies - a single institution's, pharmacokinetic and pilot prospective study.

PubMed

Takai, Mihoko; Yamauchi, Takahiro; Ookura, Miyuki; Matsuda, Yasufumi; Tai, Katsunori; Kishi, Shinji; Yoshida, Akira; Iwasaki, Hiromichi; Nakamura, Toru; Ueda, Takanori

2014-12-01

Tumor lysis syndrome (TLS) is a life-threatening oncological emergency, and control of serum uric acid level (S-UA) is most important. In this single-institution, short-term and pilot prospective study, the efficacy of a new xanthine oxidase inhibitor, febuxostat, as an alternative to conventional allopurinol, including its effects on hypoxanthine and xanthine, was evaluated in 10 consecutive patients with hematological malignancies at intermediate risk for TLS. Febuxostat at 40 mg (n=7) or 60 mg (n=3) daily was administered according to renal function, and induction chemotherapy was started within 24 h. The primary end-point was the reduction of S-UA to ≤ 7.5 mg/dl by day 5. The median S-UA at base-line was 8.0 mg/dl (range=3.2-10.6 mg/dl). The median S-UA on day 5 after chemotherapy was 3.3 mg/dl (range=1.1-5.8 mg/dl) (p<0.0001, by paired t-test), indicating successful control of S-UA during chemotherapy. All patients achieved S-UA ≤ 7.5 mg/dl. A simultaneous decrease in serum creatinine and increase in estimated glomerular filtration rate were seen. Serum hypoxanthine and xanthine levels (as the consequence of inhibition of xanthine oxidase) were elevated along with the decrease in S-UA. Xanthine level was elevated higher compared to hypoxanthine level and reached the level reported to cause xanthine nephropathy, but no advance of renal impairment was observed. Serum febuxostat concentrations at 2 h after administration were 891.8 ± 285.0 ng/ml (mean ± SE) for the 40-mg dose and 770.6 ± 242.7 ng/ml for the 60-mg dose (p=0.80, unpaired t-test), showing no accumulation in patients with renal impairment. No febuxostat-related adverse reactions were noted. No patients experienced progressive TLS. Febuxostat is promising for the management of TLS of an intermediate-risk patient and further observation and reevaluation regarding xanthine nephropathy should be performed. Copyright© 2014 International Institute of Anticancer Research (Dr. John G. Delinassios), All rights reserved.

Point Cloud Generation from Aerial Image Data Acquired by a Quadrocopter Type Micro Unmanned Aerial Vehicle and a Digital Still Camera

PubMed Central

Rosnell, Tomi; Honkavaara, Eija

2012-01-01

The objective of this investigation was to develop and investigate methods for point cloud generation by image matching using aerial image data collected by quadrocopter type micro unmanned aerial vehicle (UAV) imaging systems. Automatic generation of high-quality, dense point clouds from digital images by image matching is a recent, cutting-edge step forward in digital photogrammetric technology. The major components of the system for point cloud generation are a UAV imaging system, an image data collection process using high image overlaps, and post-processing with image orientation and point cloud generation. Two post-processing approaches were developed: one of the methods is based on Bae Systems’ SOCET SET classical commercial photogrammetric software and another is built using Microsoft®’s Photosynth™ service available in the Internet. Empirical testing was carried out in two test areas. Photosynth processing showed that it is possible to orient the images and generate point clouds fully automatically without any a priori orientation information or interactive work. The photogrammetric processing line provided dense and accurate point clouds that followed the theoretical principles of photogrammetry, but also some artifacts were detected. The point clouds from the Photosynth processing were sparser and noisier, which is to a large extent due to the fact that the method is not optimized for dense point cloud generation. Careful photogrammetric processing with self-calibration is required to achieve the highest accuracy. Our results demonstrate the high performance potential of the approach and that with rigorous processing it is possible to reach results that are consistent with theory. We also point out several further research topics. Based on theoretical and empirical results, we give recommendations for properties of imaging sensor, data collection and processing of UAV image data to ensure accurate point cloud generation. PMID:22368479

Point cloud generation from aerial image data acquired by a quadrocopter type micro unmanned aerial vehicle and a digital still camera.

PubMed

Rosnell, Tomi; Honkavaara, Eija

2012-01-01

The objective of this investigation was to develop and investigate methods for point cloud generation by image matching using aerial image data collected by quadrocopter type micro unmanned aerial vehicle (UAV) imaging systems. Automatic generation of high-quality, dense point clouds from digital images by image matching is a recent, cutting-edge step forward in digital photogrammetric technology. The major components of the system for point cloud generation are a UAV imaging system, an image data collection process using high image overlaps, and post-processing with image orientation and point cloud generation. Two post-processing approaches were developed: one of the methods is based on Bae Systems' SOCET SET classical commercial photogrammetric software and another is built using Microsoft(®)'s Photosynth™ service available in the Internet. Empirical testing was carried out in two test areas. Photosynth processing showed that it is possible to orient the images and generate point clouds fully automatically without any a priori orientation information or interactive work. The photogrammetric processing line provided dense and accurate point clouds that followed the theoretical principles of photogrammetry, but also some artifacts were detected. The point clouds from the Photosynth processing were sparser and noisier, which is to a large extent due to the fact that the method is not optimized for dense point cloud generation. Careful photogrammetric processing with self-calibration is required to achieve the highest accuracy. Our results demonstrate the high performance potential of the approach and that with rigorous processing it is possible to reach results that are consistent with theory. We also point out several further research topics. Based on theoretical and empirical results, we give recommendations for properties of imaging sensor, data collection and processing of UAV image data to ensure accurate point cloud generation.

a Fast Method for Measuring the Similarity Between 3d Model and 3d Point Cloud

NASA Astrophysics Data System (ADS)

Zhang, Zongliang; Li, Jonathan; Li, Xin; Lin, Yangbin; Zhang, Shanxin; Wang, Cheng

2016-06-01

This paper proposes a fast method for measuring the partial Similarity between 3D Model and 3D point Cloud (SimMC). It is crucial to measure SimMC for many point cloud-related applications such as 3D object retrieval and inverse procedural modelling. In our proposed method, the surface area of model and the Distance from Model to point Cloud (DistMC) are exploited as measurements to calculate SimMC. Here, DistMC is defined as the weighted distance of the distances between points sampled from model and point cloud. Similarly, Distance from point Cloud to Model (DistCM) is defined as the average distance of the distances between points in point cloud and model. In order to reduce huge computational burdens brought by calculation of DistCM in some traditional methods, we define SimMC as the ratio of weighted surface area of model to DistMC. Compared to those traditional SimMC measuring methods that are only able to measure global similarity, our method is capable of measuring partial similarity by employing distance-weighted strategy. Moreover, our method is able to be faster than other partial similarity assessment methods. We demonstrate the superiority of our method both on synthetic data and laser scanning data.

Improving LiDAR Biomass Model Uncertainty through Non-Destructive Allometry and Plot-level 3D Reconstruction with Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Stovall, A. E.; Shugart, H. H., Jr.

2017-12-01

Future NASA and ESA satellite missions plan to better quantify global carbon through detailed observations of forest structure, but ultimately rely on uncertain ground measurement approaches for calibration and validation. A significant amount of the uncertainty in estimating plot-level biomass can be attributed to inadequate and unrepresentative allometric relationships used to convert plot-level tree measurements to estimates of aboveground biomass. These allometric equations are known to have high errors and biases, particularly in carbon rich forests because they were calibrated with small and often biased samples of destructively harvested trees. To overcome this issue, a non-destructive methodology for estimating tree and plot-level biomass has been proposed through the use of Terrestrial Laser Scanning (TLS). We investigated the potential for using TLS as a ground validation approach in LiDAR-based biomass mapping though virtual plot-level tree volume reconstruction and biomass estimation. Plot-level biomass estimates were compared on the Virginia-based Smithsonian Conservation Biology Institute's SIGEO forest with full 3D reconstruction, TLS allometry, and Jenkins et al. (2003) allometry. On average, full 3D reconstruction ultimately provided the lowest uncertainty estimate of plot-level biomass (9.6%), followed by TLS allometry (16.9%) and the national equations (20.2%). TLS offered modest improvements to the airborne LiDAR empirical models, reducing RMSE from 16.2% to 14%. Our findings suggest TLS plot acquisitions and non-destructive allometry can play a vital role for reducing uncertainty in calibration and validation data for biomass mapping in the upcoming NASA and ESA missions.

Determining geometric error model parameters of a terrestrial laser scanner through Two-face, Length-consistency, and Network methods

PubMed Central

Wang, Ling; Muralikrishnan, Bala; Rachakonda, Prem; Sawyer, Daniel

2017-01-01

Terrestrial laser scanners (TLS) are increasingly used in large-scale manufacturing and assembly where required measurement uncertainties are on the order of few tenths of a millimeter or smaller. In order to meet these stringent requirements, systematic errors within a TLS are compensated in-situ through self-calibration. In the Network method of self-calibration, numerous targets distributed in the work-volume are measured from multiple locations with the TLS to determine parameters of the TLS error model. In this paper, we propose two new self-calibration methods, the Two-face method and the Length-consistency method. The Length-consistency method is proposed as a more efficient way of realizing the Network method where the length between any pair of targets from multiple TLS positions are compared to determine TLS model parameters. The Two-face method is a two-step process. In the first step, many model parameters are determined directly from the difference between front-face and back-face measurements of targets distributed in the work volume. In the second step, all remaining model parameters are determined through the Length-consistency method. We compare the Two-face method, the Length-consistency method, and the Network method in terms of the uncertainties in the model parameters, and demonstrate the validity of our techniques using a calibrated scale bar and front-face back-face target measurements. The clear advantage of these self-calibration methods is that a reference instrument or calibrated artifacts are not required, thus significantly lowering the cost involved in the calibration process. PMID:28890607

Tertiary Lymphoid Structure-Associated B Cells are Key Players in Anti-Tumor Immunity

PubMed Central

Germain, Claire; Gnjatic, Sacha; Dieu-Nosjean, Marie-Caroline

2015-01-01

It is now admitted that the immune system plays a major role in tumor control. Besides the existence of tumor-specific T cells and B cells, many studies have demonstrated that high numbers of tumor-infiltrating lymphocytes are associated with good clinical outcome. In addition, not only the density but also the organization of tumor-infiltrating immune cells has been shown to determine patient survival. Indeed, more and more studies describe the development within the tumor microenvironment of tertiary lymphoid structures (TLS), whose presence has a positive impact on tumor prognosis. TLS are transient ectopic lymphoid aggregates displaying the same organization and functionality as canonical secondary lymphoid organs, with T-cell-rich and B-cell-rich areas that are sites for the differentiation of effector and memory T cells and B cells. However, factors favoring the emergence of such structures within tumors still need to be fully characterized. In this review, we survey the state of the art of what is known about the general organization, induction, and functionality of TLS during chronic inflammation, and more especially in cancer, with a particular focus on the B-cell compartment. We detail the role played by TLS B cells in anti-tumor immunity, both as antigen-presenting cells and tumor antigen-specific antibody-secreting cells, and raise the question of the capacity of chemotherapeutic and immunotherapeutic agents to induce the development of TLS within tumors. Finally, we explore how to take advantage of our knowledge on TLS B cells to develop new therapeutic tools. PMID:25755654

The potential to characterize ecological data with terrestrial laser scanning in Harvard Forest, MA.

PubMed

Orwig, D A; Boucher, P; Paynter, I; Saenz, E; Li, Z; Schaaf, C

2018-04-06

Contemporary terrestrial laser scanning (TLS) is being used widely in forest ecology applications to examine ecosystem properties at increasing spatial and temporal scales. Harvard Forest (HF) in Petersham, MA, USA, is a long-term ecological research (LTER) site, a National Ecological Observatory Network (NEON) location and contains a 35 ha plot which is part of Smithsonian Institution's Forest Global Earth Observatory (ForestGEO). The combination of long-term field plots, eddy flux towers and the detailed past historical records has made HF very appealing for a variety of remote sensing studies. Terrestrial laser scanners, including three pioneering research instruments: the Echidna Validation Instrument, the Dual-Wavelength Echidna Lidar and the Compact Biomass Lidar, have already been used both independently and in conjunction with airborne laser scanning data and forest census data to characterize forest dynamics. TLS approaches include three-dimensional reconstructions of a plot over time, establishing the impact of ice storm damage on forest canopy structure, and characterizing eastern hemlock ( Tsuga canadensis ) canopy health affected by an invasive insect, the hemlock woolly adelgid ( Adelges tsugae ). Efforts such as those deployed at HF are demonstrating the power of TLS as a tool for monitoring ecological dynamics, identifying emerging forest health issues, measuring forest biomass and capturing ecological data relevant to other disciplines. This paper highlights various aspects of the ForestGEO plot that are important to current TLS work, the potential for exchange between forest ecology and TLS, and emphasizes the strength of combining TLS data with long-term ecological field data to create emerging opportunities for scientific study.

The potential to characterize ecological data with terrestrial laser scanning in Harvard Forest, MA

PubMed Central

Boucher, P.; Saenz, E.; Li, Z.

2018-01-01

Contemporary terrestrial laser scanning (TLS) is being used widely in forest ecology applications to examine ecosystem properties at increasing spatial and temporal scales. Harvard Forest (HF) in Petersham, MA, USA, is a long-term ecological research (LTER) site, a National Ecological Observatory Network (NEON) location and contains a 35 ha plot which is part of Smithsonian Institution's Forest Global Earth Observatory (ForestGEO). The combination of long-term field plots, eddy flux towers and the detailed past historical records has made HF very appealing for a variety of remote sensing studies. Terrestrial laser scanners, including three pioneering research instruments: the Echidna Validation Instrument, the Dual-Wavelength Echidna Lidar and the Compact Biomass Lidar, have already been used both independently and in conjunction with airborne laser scanning data and forest census data to characterize forest dynamics. TLS approaches include three-dimensional reconstructions of a plot over time, establishing the impact of ice storm damage on forest canopy structure, and characterizing eastern hemlock (Tsuga canadensis) canopy health affected by an invasive insect, the hemlock woolly adelgid (Adelges tsugae). Efforts such as those deployed at HF are demonstrating the power of TLS as a tool for monitoring ecological dynamics, identifying emerging forest health issues, measuring forest biomass and capturing ecological data relevant to other disciplines. This paper highlights various aspects of the ForestGEO plot that are important to current TLS work, the potential for exchange between forest ecology and TLS, and emphasizes the strength of combining TLS data with long-term ecological field data to create emerging opportunities for scientific study. PMID:29503723

A tactile display for international space station (ISS) extravehicular activity (EVA).

PubMed

Rochlis, J L; Newman, D J

2000-06-01

A tactile display to increase an astronaut's situational awareness during an extravehicular activity (EVA) has been developed and ground tested. The Tactor Locator System (TLS) is a non-intrusive, intuitive display capable of conveying position and velocity information via a vibrotactile stimulus applied to the subject's neck and torso. In the Earth's 1 G environment, perception of position and velocity is determined by the body's individual sensory systems. Under normal sensory conditions, redundant information from these sensory systems provides humans with an accurate sense of their position and motion. However, altered environments, including exposure to weightlessness, can lead to conflicting visual and vestibular cues, resulting in decreased situational awareness. The TLS was designed to provide somatosensory cues to complement the visual system during EVA operations. An EVA task was simulated on a computer graphics workstation with a display of the International Space Station (ISS) and a target astronaut at an unknown location. Subjects were required to move about the ISS and acquire the target astronaut using either an auditory cue at the outset, or the TLS. Subjects used a 6 degree of freedom input device to command translational and rotational motion. The TLS was configured to act as a position aid, providing target direction information to the subject through a localized stimulus. Results show that the TLS decreases reaction time (p = 0.001) and movement time (p = 0.001) for simulated subject (astronaut) motion around the ISS. The TLS is a useful aid in increasing an astronaut's situational awareness, and warrants further testing to explore other uses, tasks and configurations.

Unusual specific heat of almost dry L-cysteine and L-cystine amino acids.

PubMed

Ishikawa, M S; Lima, T A; Ferreira, F F; Martinho, H S

2015-03-01

A detailed quantitative analysis of the specific heat in the 0.5- to 200-K temperature range for almost dry L-cysteine and its dimer, L-cystine, amino acids is presented. We report the occurrence of a sharp first-order transition at ∼76 K for L-cysteine associated with the thiol group ordering which was successfully modeled with the two-dimensional Ising model. We demonstrated that quantum rotors, two-level systems (TLS), Einstein oscillators, and acoustic phonons (the Debye model) are essential ingredients to correctly describe the overall experimental data. Our analysis pointed out the absence of the TLS contribution to the low temperature specific heat of L-cysteine. This result was similar to that found in other noncrystalline amorphous materials, e.g., amorphous silicon, low density amorphous water, and ultrastable glasses. L-cystine presented an unusual nonlinear acoustic dispersion relation ω(q)=vq0.95 and a Maxwell-Boltzmann-type distribution of tunneling barriers. The presence of Einstein oscillators with ΘE∼70 K was common in both systems and adequately modeled the boson peak contributions.

The Properties of Terrestrial Laser System Intensity for Measuring Leaf Geometries: A Case Study with Conference Pear Trees (Pyrus Communis)

PubMed Central

Balduzzi, Mathilde A.F.; Van der Zande, Dimitry; Stuckens, Jan; Verstraeten, Willem W.; Coppin, Pol

2011-01-01

Light Detection and Ranging (LiDAR) technology can be a valuable tool for describing and quantifying vegetation structure. However, because of their size, extraction of leaf geometries remains complicated. In this study, the intensity data produced by the Terrestrial Laser System (TLS) FARO LS880 is corrected for the distance effect and its relationship with the angle of incidence between the laser beam and the surface of the leaf of a Conference Pear tree (Pyrus Commmunis) is established. The results demonstrate that with only intensity, this relationship has a potential for determining the angle of incidence with the leaves surface with a precision of ±5° for an angle of incidence smaller than 60°, whereas it is more variable for an angle of incidence larger than 60°. It appears that TLS beam footprint, leaf curvatures and leaf wrinkles have an impact on the relationship between intensity and angle of incidence, though, this analysis shows that the intensity of scanned leaves has a potential to eliminate ghost points and to improve their meshing. PMID:22319374

Motion Estimation System Utilizing Point Cloud Registration

NASA Technical Reports Server (NTRS)

Chen, Qi (Inventor)

2016-01-01

A system and method of estimation motion of a machine is disclosed. The method may include determining a first point cloud and a second point cloud corresponding to an environment in a vicinity of the machine. The method may further include generating a first extended gaussian image (EGI) for the first point cloud and a second EGI for the second point cloud. The method may further include determining a first EGI segment based on the first EGI and a second EGI segment based on the second EGI. The method may further include determining a first two dimensional distribution for points in the first EGI segment and a second two dimensional distribution for points in the second EGI segment. The method may further include estimating motion of the machine based on the first and second two dimensional distributions.

Pointo - a Low Cost Solution to Point Cloud Processing

NASA Astrophysics Data System (ADS)

Houshiar, H.; Winkler, S.

2017-11-01

With advance in technology access to data especially 3D point cloud data becomes more and more an everyday task. 3D point clouds are usually captured with very expensive tools such as 3D laser scanners or very time consuming methods such as photogrammetry. Most of the available softwares for 3D point cloud processing are designed for experts and specialists in this field and are usually very large software packages containing variety of methods and tools. This results in softwares that are usually very expensive to acquire and also very difficult to use. Difficulty of use is caused by complicated user interfaces that is required to accommodate a large list of features. The aim of these complex softwares is to provide a powerful tool for a specific group of specialist. However they are not necessary required by the majority of the up coming average users of point clouds. In addition to complexity and high costs of these softwares they generally rely on expensive and modern hardware and only compatible with one specific operating system. Many point cloud customers are not point cloud processing experts or willing to spend the high acquisition costs of these expensive softwares and hardwares. In this paper we introduce a solution for low cost point cloud processing. Our approach is designed to accommodate the needs of the average point cloud user. To reduce the cost and complexity of software our approach focuses on one functionality at a time in contrast with most available softwares and tools that aim to solve as many problems as possible at the same time. Our simple and user oriented design improve the user experience and empower us to optimize our methods for creation of an efficient software. In this paper we introduce Pointo family as a series of connected softwares to provide easy to use tools with simple design for different point cloud processing requirements. PointoVIEWER and PointoCAD are introduced as the first components of the Pointo family to provide a fast and efficient visualization with the ability to add annotation and documentation to the point clouds.

Study of Huizhou architecture component point cloud in surface reconstruction

NASA Astrophysics Data System (ADS)

Zhang, Runmei; Wang, Guangyin; Ma, Jixiang; Wu, Yulu; Zhang, Guangbin

2017-06-01

Surface reconfiguration softwares have many problems such as complicated operation on point cloud data, too many interaction definitions, and too stringent requirements for inputing data. Thus, it has not been widely popularized so far. This paper selects the unique Huizhou Architecture chuandou wooden beam framework as the research object, and presents a complete set of implementation in data acquisition from point, point cloud preprocessing and finally implemented surface reconstruction. Firstly, preprocessing the acquired point cloud data, including segmentation and filtering. Secondly, the surface’s normals are deduced directly from the point cloud dataset. Finally, the surface reconstruction is studied by using Greedy Projection Triangulation Algorithm. Comparing the reconstructed model with the three-dimensional surface reconstruction softwares, the results show that the proposed scheme is more smooth, time efficient and portable.

A Three-Dimensional Approach and Open Source Structure for the Design and Experimentation of Teaching-Learning Sequences: The case of friction

NASA Astrophysics Data System (ADS)

Besson, Ugo; Borghi, Lidia; De Ambrosis, Anna; Mascheretti, Paolo

2010-07-01

We have developed a teaching-learning sequence (TLS) on friction based on a preliminary study involving three dimensions: an analysis of didactic research on the topic, an overview of usual approaches, and a critical analysis of the subject, considered also in its historical development. We found that mostly the usual presentations do not take into account the complexity of friction as it emerges from scientific research, may reinforce some inaccurate students' conceptions, and favour a limited vision of friction phenomena. The TLS we propose begins by considering a wide range of friction phenomena to favour an initial motivation and a broader view of the topic and then develops a path of interrelated observations, experiments, and theoretical aspects. It proposes the use of structural models, involving visual representations and stimulating intuition, aimed at helping students build mental models of friction mechanisms. To facilitate the reproducibility in school contexts, the sequence is designed as an open source structure, with a core of contents, conceptual correlations and methodological choices, and a cloud of elements that can be re-designed by teachers. The sequence has been tested in teacher education and in upper secondary school, and has shown positive results in overcoming student difficulties and stimulating richer reasoning based on the structural models we suggested. The proposed path has modified the teachers' view of the topic, producing a motivation to change their traditional presentations. The open structure of the sequence has facilitated its implementation by teachers in school in coherence with the rationale of the proposal.

Comparing the accuracy of terrestrial laser scanner in measuring forest inventory variables to enhance better decision making for potential fire hazards

NASA Astrophysics Data System (ADS)

Ghimire, Suman; Xystrakis, Fotios; Koutsias, Nikos

2017-04-01

Forest inventory variables are essential in accessing the potential of wildfire hazard, obtaining above ground biomass and carbon sequestration which helps developing strategies for sustainable management of forests. Effective management of forest resources relies on the accuracy of such inventory variables. This study aims to compare the accuracy in obtaining the forest inventory variables like diameter at breast height (DBH) and tree height from Terrestrial Laser Scanner (Faro Focus 3D X 330) with that from the traditional forest inventory techniques in the Mediterranean forests of Greece. The data acquisition was carried out on an area of 9,539.8 m2 with six plots each of radius 6 m. Computree algorithm was applied for automatic detection of DBH from terrestrial laser scanner data. Similarly, tree height was estimated manually using CloudCompare software for the terrestrial laser scanner data. The field estimates of DBH and tree height was carried out using calipers and Nikon Forestry 550 Laser Rangefinder. The comparison of DBH measured between field estimates and Terrestrial Laser Scanner (TLS), resulted in R squared values ranging from 0.75 to 0.96 at the plot level. An average R2 and RMSE value of 0.80 and 1.07 m respectively was obtained when comparing the tree height between TLS and field data. Our results confirm that terrestrial laser scanner can provide nondestructive, high-resolution, and precise determination of forest inventory for better decision making in sustainable forest management and assessing potential of forest fire hazards.

Compression of 3D Point Clouds Using a Region-Adaptive Hierarchical Transform.

PubMed

De Queiroz, Ricardo; Chou, Philip A

2016-06-01

In free-viewpoint video, there is a recent trend to represent scene objects as solids rather than using multiple depth maps. Point clouds have been used in computer graphics for a long time and with the recent possibility of real time capturing and rendering, point clouds have been favored over meshes in order to save computation. Each point in the cloud is associated with its 3D position and its color. We devise a method to compress the colors in point clouds which is based on a hierarchical transform and arithmetic coding. The transform is a hierarchical sub-band transform that resembles an adaptive variation of a Haar wavelet. The arithmetic encoding of the coefficients assumes Laplace distributions, one per sub-band. The Laplace parameter for each distribution is transmitted to the decoder using a custom method. The geometry of the point cloud is encoded using the well-established octtree scanning. Results show that the proposed solution performs comparably to the current state-of-the-art, in many occasions outperforming it, while being much more computationally efficient. We believe this work represents the state-of-the-art in intra-frame compression of point clouds for real-time 3D video.

Usefulness of layer-specific strain for identifying complex CAD and predicting the severity of coronary lesions in patients with non-ST-segment elevation acute coronary syndrome: Compared with Syntax score.

PubMed

Zhang, Li; Wu, Wei-Chun; Ma, Hong; Wang, Hao

2016-11-15

Layer-specific strain allows the assessment of the function of every layer of myocardium. To evaluate the changes of non-ST-segment elevation acute coronary syndrome(NSTE-ACS) patients with and without complex coronary artery disease(CAD) by layer-specific strain and determine if myocardial strain can identify complex CAD and assess the severity of coronary lesions as defined by Syntax score (SS). A total of 139 patients undergoing coronary angiography due to suspected NSTE-ACS were prospectively enrolled. Echocardiography was performed 1h before angiography. Global longitudinal strain (GLS), territorial longitudinal strain (TLS), global circumferential strain (GCS) and territorial circumferential strain (TCS) of the three layers of LV wall were assessed by two-dimensional (2D) speckle tracking echocardiography (STE) with layer-specific myocardial deformation quantitative analysis based on the perfusion territories of the three major coronary arteries in an 18-segment model of LV. SS was used for predicting the severity of coronary lesions in patients with complex CAD. 78 had complex CAD, 32 had 1- or 2-vessel disease and 29 had no significant coronary stenosis confirmed by coronary angiography. According to SS value, 78 complex CAD subjects were subdivided into three groups, 24 in group SS 1 (SS≤22), 26 in group SS 2 (SS 23-32) and 28 in group SS 3 (SS≥33). Compared to the other two groups without complex CAD, patients with NSTE-ACS due to complex CAD had worse function in all 3 myocardial layers assessed by GLS, TLS, GCS and TCS. Endocardial GLS and TLS (all, P<0.01) were most affected. The absolute differences between endocardial and epicardial GLS and TLS were lower in magnitude in patients with complex CAD than in those without (all, P<0.001), and the more complex of coronary lesion, the lower magnitude of the parameters(all, P<0.001). Endocardial GLS and TLS were closely correlated with SS value(r=-0.751 and r=-0.753, respectively; P<0.001). By receiver-operating characteristic curve analysis, endocardial GLS and TLS demonstrated the highest area under curve, showing better diagnostic accuracy (endocardial GLS: value<-21.35% had 72% sensitivity, 84% specificity and area under the curve ¼0.846; endocardial TLS: value<-20.15% had 72% sensitivity, 88% specificity and area under the curve ¼0.852) than GCS, TCS, mid-myocardial and epicardial GLS, and TLS(all, P<0.05). Strains, particularly endocardial GLS and TLS measurement by 2DSTE might enable a non-invasive method to identify complex CAD and predict the severity of coronary lesions in patients with NSTE-ACS. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

TH-AB-202-08: A Robust Real-Time Surface Reconstruction Method On Point Clouds Captured From a 3D Surface Photogrammetry System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, W; Sawant, A; Ruan, D

2016-06-15

Purpose: Surface photogrammetry (e.g. VisionRT, C-Rad) provides a noninvasive way to obtain high-frequency measurement for patient motion monitoring in radiotherapy. This work aims to develop a real-time surface reconstruction method on the acquired point clouds, whose acquisitions are subject to noise and missing measurements. In contrast to existing surface reconstruction methods that are usually computationally expensive, the proposed method reconstructs continuous surfaces with comparable accuracy in real-time. Methods: The key idea in our method is to solve and propagate a sparse linear relationship from the point cloud (measurement) manifold to the surface (reconstruction) manifold, taking advantage of the similarity inmore » local geometric topology in both manifolds. With consistent point cloud acquisition, we propose a sparse regression (SR) model to directly approximate the target point cloud as a sparse linear combination from the training set, building the point correspondences by the iterative closest point (ICP) method. To accommodate changing noise levels and/or presence of inconsistent occlusions, we further propose a modified sparse regression (MSR) model to account for the large and sparse error built by ICP, with a Laplacian prior. We evaluated our method on both clinical acquired point clouds under consistent conditions and simulated point clouds with inconsistent occlusions. The reconstruction accuracy was evaluated w.r.t. root-mean-squared-error, by comparing the reconstructed surfaces against those from the variational reconstruction method. Results: On clinical point clouds, both the SR and MSR models achieved sub-millimeter accuracy, with mean reconstruction time reduced from 82.23 seconds to 0.52 seconds and 0.94 seconds, respectively. On simulated point cloud with inconsistent occlusions, the MSR model has demonstrated its advantage in achieving consistent performance despite the introduced occlusions. Conclusion: We have developed a real-time and robust surface reconstruction method on point clouds acquired by photogrammetry systems. It serves an important enabling step for real-time motion tracking in radiotherapy. This work is supported in part by NIH grant R01 CA169102-02.« less

FPFH-based graph matching for 3D point cloud registration

NASA Astrophysics Data System (ADS)

Zhao, Jiapeng; Li, Chen; Tian, Lihua; Zhu, Jihua

2018-04-01

Correspondence detection is a vital step in point cloud registration and it can help getting a reliable initial alignment. In this paper, we put forward an advanced point feature-based graph matching algorithm to solve the initial alignment problem of rigid 3D point cloud registration with partial overlap. Specifically, Fast Point Feature Histograms are used to determine the initial possible correspondences firstly. Next, a new objective function is provided to make the graph matching more suitable for partially overlapping point cloud. The objective function is optimized by the simulated annealing algorithm for final group of correct correspondences. Finally, we present a novel set partitioning method which can transform the NP-hard optimization problem into a O(n3)-solvable one. Experiments on the Stanford and UWA public data sets indicates that our method can obtain better result in terms of both accuracy and time cost compared with other point cloud registration methods.

Smart Point Cloud: Definition and Remaining Challenges

NASA Astrophysics Data System (ADS)

Poux, F.; Hallot, P.; Neuville, R.; Billen, R.

2016-10-01

Dealing with coloured point cloud acquired from terrestrial laser scanner, this paper identifies remaining challenges for a new data structure: the smart point cloud. This concept arises with the statement that massive and discretized spatial information from active remote sensing technology is often underused due to data mining limitations. The generalisation of point cloud data associated with the heterogeneity and temporality of such datasets is the main issue regarding structure, segmentation, classification, and interaction for an immediate understanding. We propose to use both point cloud properties and human knowledge through machine learning to rapidly extract pertinent information, using user-centered information (smart data) rather than raw data. A review of feature detection, machine learning frameworks and database systems indexed both for mining queries and data visualisation is studied. Based on existing approaches, we propose a new 3-block flexible framework around device expertise, analytic expertise and domain base reflexion. This contribution serves as the first step for the realisation of a comprehensive smart point cloud data structure.

Motion-Compensated Compression of Dynamic Voxelized Point Clouds.

PubMed

De Queiroz, Ricardo L; Chou, Philip A

2017-05-24

Dynamic point clouds are a potential new frontier in visual communication systems. A few articles have addressed the compression of point clouds, but very few references exist on exploring temporal redundancies. This paper presents a novel motion-compensated approach to encoding dynamic voxelized point clouds at low bit rates. A simple coder breaks the voxelized point cloud at each frame into blocks of voxels. Each block is either encoded in intra-frame mode or is replaced by a motion-compensated version of a block in the previous frame. The decision is optimized in a rate-distortion sense. In this way, both the geometry and the color are encoded with distortion, allowing for reduced bit-rates. In-loop filtering is employed to minimize compression artifacts caused by distortion in the geometry information. Simulations reveal that this simple motion compensated coder can efficiently extend the compression range of dynamic voxelized point clouds to rates below what intra-frame coding alone can accommodate, trading rate for geometry accuracy.

Solubilization of phenanthrene above cloud point of Brij 30: a new application in biodegradation.

PubMed

Pantsyrnaya, T; Delaunay, S; Goergen, J L; Guseva, E; Boudrant, J

2013-06-01

In the present study a new application of solubilization of phenanthrene above cloud point of Brij 30 in biodegradation was developed. It was shown that a temporal solubilization of phenanthrene above cloud point of Brij 30 (5wt%) permitted to obtain a stable increase of the solubility of phenanthrene even when the temperature was decreased to culture conditions of used microorganism Pseudomonas putida (28°C). A higher initial concentration of soluble phenanthrene was obtained after the cloud point treatment: 200 against 120μM without treatment. All soluble phenanthrene was metabolized and a higher final concentration of its major metabolite - 1-hydroxy-2-naphthoic acid - (160 against 85μM) was measured in the culture medium in the case of a preliminary cloud point treatment. Therefore a temporary solubilization at cloud point might have a perspective application in the enhancement of biodegradation of polycyclic aromatic hydrocarbons. Copyright © 2013 Elsevier Ltd. All rights reserved.

A portable low-cost 3D point cloud acquiring method based on structure light

NASA Astrophysics Data System (ADS)

Gui, Li; Zheng, Shunyi; Huang, Xia; Zhao, Like; Ma, Hao; Ge, Chao; Tang, Qiuxia

2018-03-01

A fast and low-cost method of acquiring 3D point cloud data is proposed in this paper, which can solve the problems of lack of texture information and low efficiency of acquiring point cloud data with only one pair of cheap cameras and projector. Firstly, we put forward a scene adaptive design method of random encoding pattern, that is, a coding pattern is projected onto the target surface in order to form texture information, which is favorable for image matching. Subsequently, we design an efficient dense matching algorithm that fits the projected texture. After the optimization of global algorithm and multi-kernel parallel development with the fusion of hardware and software, a fast acquisition system of point-cloud data is accomplished. Through the evaluation of point cloud accuracy, the results show that point cloud acquired by the method proposed in this paper has higher precision. What`s more, the scanning speed meets the demand of dynamic occasion and has better practical application value.

3D Modelling of Inaccessible Areas using UAV-based Aerial Photography and Structure from Motion

NASA Astrophysics Data System (ADS)

Obanawa, Hiroyuki; Hayakawa, Yuichi; Gomez, Christopher

2014-05-01

In hardly accessible areas, the collection of 3D point-clouds using TLS (Terrestrial Laser Scanner) can be very challenging, while airborne equivalent would not give a correct account of subvertical features and concave geometries like caves. To solve such problem, the authors have experimented an aerial photography based SfM (Structure from Motion) technique on a 'peninsular-rock' surrounded on three sides by the sea at a Pacific coast in eastern Japan. The research was carried out using UAS (Unmanned Aerial System) combined with a commercial small UAV (Unmanned Aerial Vehicle) carrying a compact camera. The UAV is a DJI PHANTOM: the UAV has four rotors (quadcopter), it has a weight of 1000 g, a payload of 400 g and a maximum flight time of 15 minutes. The camera is a GoPro 'HERO3 Black Edition': resolution 12 million pixels; weight 74 g; and 0.5 sec. interval-shot. The 3D model has been constructed by digital photogrammetry using a commercial SfM software, Agisoft PhotoScan Professional®, which can generate sparse and dense point-clouds, from which polygonal models and orthophotographs can be calculated. Using the 'flight-log' and/or GCPs (Ground Control Points), the software can generate digital surface model. As a result, high-resolution aerial orthophotographs and a 3D model were obtained. The results have shown that it was possible to survey the sea cliff and the wave cut-bench, which are unobservable from land side. In details, we could observe the complexity of the sea cliff that is nearly vertical as a whole while slightly overhanging over the thinner base. The wave cut bench is nearly flat and develops extensively at the base of the cliff. Although there are some evidences of small rockfalls at the upper part of the cliff, there is no evidence of very recent activity, because no fallen rock exists on the wave cut bench. This system has several merits: firstly lower cost than the existing measuring methods such as manned-flight survey and aerial laser scanning. Secondly, compared to these other methods, the one the authors have presented also enables frequent measurements. Thirdly lightweight and compact system realizes higher applicability to various fields. However, the method is still in need of development, as the measurable range is narrower than the other airborne methods, normally up to several hectares, and data accuracy of coordinate and elevation is unknown from SfM alone.

Joint classification and contour extraction of large 3D point clouds

NASA Astrophysics Data System (ADS)

Hackel, Timo; Wegner, Jan D.; Schindler, Konrad

2017-08-01

We present an effective and efficient method for point-wise semantic classification and extraction of object contours of large-scale 3D point clouds. What makes point cloud interpretation challenging is the sheer size of several millions of points per scan and the non-grid, sparse, and uneven distribution of points. Standard image processing tools like texture filters, for example, cannot handle such data efficiently, which calls for dedicated point cloud labeling methods. It turns out that one of the major drivers for efficient computation and handling of strong variations in point density, is a careful formulation of per-point neighborhoods at multiple scales. This allows, both, to define an expressive feature set and to extract topologically meaningful object contours. Semantic classification and contour extraction are interlaced problems. Point-wise semantic classification enables extracting a meaningful candidate set of contour points while contours help generating a rich feature representation that benefits point-wise classification. These methods are tailored to have fast run time and small memory footprint for processing large-scale, unstructured, and inhomogeneous point clouds, while still achieving high classification accuracy. We evaluate our methods on the semantic3d.net benchmark for terrestrial laser scans with >109 points.

High-Precision Registration of Point Clouds Based on Sphere Feature Constraints.

PubMed

Huang, Junhui; Wang, Zhao; Gao, Jianmin; Huang, Youping; Towers, David Peter

2016-12-30

Point cloud registration is a key process in multi-view 3D measurements. Its precision affects the measurement precision directly. However, in the case of the point clouds with non-overlapping areas or curvature invariant surface, it is difficult to achieve a high precision. A high precision registration method based on sphere feature constraint is presented to overcome the difficulty in the paper. Some known sphere features with constraints are used to construct virtual overlapping areas. The virtual overlapping areas provide more accurate corresponding point pairs and reduce the influence of noise. Then the transformation parameters between the registered point clouds are solved by an optimization method with weight function. In that case, the impact of large noise in point clouds can be reduced and a high precision registration is achieved. Simulation and experiments validate the proposed method.

High-Precision Registration of Point Clouds Based on Sphere Feature Constraints

PubMed Central

Huang, Junhui; Wang, Zhao; Gao, Jianmin; Huang, Youping; Towers, David Peter

2016-01-01

Point cloud registration is a key process in multi-view 3D measurements. Its precision affects the measurement precision directly. However, in the case of the point clouds with non-overlapping areas or curvature invariant surface, it is difficult to achieve a high precision. A high precision registration method based on sphere feature constraint is presented to overcome the difficulty in the paper. Some known sphere features with constraints are used to construct virtual overlapping areas. The virtual overlapping areas provide more accurate corresponding point pairs and reduce the influence of noise. Then the transformation parameters between the registered point clouds are solved by an optimization method with weight function. In that case, the impact of large noise in point clouds can be reduced and a high precision registration is achieved. Simulation and experiments validate the proposed method. PMID:28042846

Biotoxicity and bioavailability of hydrophobic organic compounds solubilized in nonionic surfactant micelle phase and cloud point system.

PubMed

Pan, Tao; Liu, Chunyan; Zeng, Xinying; Xin, Qiao; Xu, Meiying; Deng, Yangwu; Dong, Wei

2017-06-01

A recent work has shown that hydrophobic organic compounds solubilized in the micelle phase of some nonionic surfactants present substrate toxicity to microorganisms with increasing bioavailability. However, in cloud point systems, biotoxicity is prevented, because the compounds are solubilized into a coacervate phase, thereby leaving a fraction of compounds with cells in a dilute phase. This study extends the understanding of the relationship between substrate toxicity and bioavailability of hydrophobic organic compounds solubilized in nonionic surfactant micelle phase and cloud point system. Biotoxicity experiments were conducted with naphthalene and phenanthrene in the presence of mixed nonionic surfactants Brij30 and TMN-3, which formed a micelle phase or cloud point system at different concentrations. Saccharomyces cerevisiae, unable to degrade these compounds, was used for the biotoxicity experiments. Glucose in the cloud point system was consumed faster than in the nonionic surfactant micelle phase, indicating that the solubilized compounds had increased toxicity to cells in the nonionic surfactant micelle phase. The results were verified by subsequent biodegradation experiments. The compounds were degraded faster by PAH-degrading bacterium in the cloud point system than in the micelle phase. All these results showed that biotoxicity of the hydrophobic organic compounds increases with bioavailability in the surfactant micelle phase but remains at a low level in the cloud point system. These results provide a guideline for the application of cloud point systems as novel media for microbial transformation or biodegradation.

The association of transequatorial loops in the solar corona with coronal mass ejection onset

NASA Astrophysics Data System (ADS)

Glover, A.; Harra, L. K.; Matthews, S. A.; Foley, C. A.

2003-03-01

It has been shown that transequatorial loops can disappear in association with the onset of a coronal mass ejection (CME) (Khan & Hudson \\cite{khan}). We extend this result by considering a larger sample of transequatorial loop systems (TLS) to investigate their associated flaring and CME activity. We find 10 of a total 18 TLS considered here to be associated with flaring and CME onset originating from a connected active region. A total 33 cases of flaring and associated CME onset are observed from these 10 systems during their lifetime. We observe the influence of this activity on the TLS in each case. In contrast to the Khan & Hudson result, we find evidence that transequatorial loop eruption leading to soft X-ray brightening equivalent in temperature to a B-class flare is equally as common as dimming in the corona. Consequently we conclude that the scenario observed by Khan & Hudson is not universal and that other types of CME-TLS association occur. It was found that for transequatorial loops that were associated with CMEs the asymmetry in longitude was larger than for those that were not associated to a CME by 10o. In addition, the extent in latitude (as a measure of the loop length) was nearly twice as large for those TLS associated with CMEs than those that were not. The asymmetry in latitude was actually on average larger for those TLS not associated with CMEs, than for those that were. This suggests that differential rotation is not a major contributor to the production of CMEs from transequatorial loops. Instead it is more likely for a CME to be produced if the loop is long, and if there is a large asymmetry in longitude. The implications of these results for CME onset prediction are discussed.

Repriming by PrimPol is critical for DNA replication restart downstream of lesions and chain-terminating nucleosides.

PubMed

Kobayashi, Kaori; Guilliam, Thomas A; Tsuda, Masataka; Yamamoto, Junpei; Bailey, Laura J; Iwai, Shigenori; Takeda, Shunichi; Doherty, Aidan J; Hirota, Kouji

2016-08-02

PrimPol is a DNA damage tolerance enzyme possessing both translesion synthesis (TLS) and primase activities. To uncover its potential role in TLS-mediated IgVλ hypermutation and define its interplay with other TLS polymerases, PrimPol(-/-) and PrimPol(-/-)/Polη(-/-)/Polζ (-/-) gene knockouts were generated in avian cells. Loss of PrimPol had no significant impact on the rate of hypermutation or the mutation spectrum of IgVλ. However, PrimPol(-/-) cells were sensitive to methylmethane sulfonate, suggesting that it may bypass abasic sites at the IgVλ segment by repriming DNA synthesis downstream of these sites. PrimPol(-/-) cells were also sensitive to cisplatin and hydroxyurea, indicating that it assists in maintaining / restarting replication at a variety of lesions. To accurately measure the relative contribution of the TLS and primase activities, we examined DNA damage sensitivity in PrimPol(-/-) cells complemented with polymerase or primase-deficient PrimPol. Polymerase-defective, but not primase-deficient, PrimPol suppresses the hypersensitivity of PrimPol(-/-) cells. This indicates that its primase, rather than TLS activity, is pivotal for DNA damage tolerance. Loss of TLS polymerases, Polη and Polζ has an additive effect on the sensitivity of PrimPol(-/-) cells. Moreover, we found that PrimPol and Polη-Polζ redundantly prevented cell death and facilitated unperturbed cell cycle progression. PrimPol(-/-) cells also exhibited increased sensitivity to a wide variety of chain-terminating nucleoside analogs (CTNAs). PrimPol could perform close-coupled repriming downstream of CTNAs and oxidative damage in vitro. Together, these results indicate that PrimPol's repriming activity plays a central role in reinitiating replication downstream from CTNAs and other specific DNA lesions.

Genetic Control of Replication through N1-methyladenine in Human Cells*

PubMed Central

Conde, Juan; Yoon, Jung-Hoon; Roy Choudhury, Jayati; Prakash, Louise; Prakash, Satya

2015-01-01

N1-methyl adenine (1-MeA) is formed in DNA by reaction with alkylating agents and naturally occurring methyl halides. The 1-MeA lesion impairs Watson-Crick base pairing and blocks normal DNA replication. Here we identify the translesion synthesis (TLS) DNA polymerases (Pols) required for replicating through 1-MeA in human cells and show that TLS through this lesion is mediated via three different pathways in which Pols ι and θ function in one pathway and Pols η and ζ, respectively, function in the other two pathways. Our biochemical studies indicate that in the Polι/Polθ pathway, Polι would carry out nucleotide insertion opposite 1-MeA from which Polθ would extend synthesis. In the Polη pathway, this Pol alone would function at both the nucleotide insertion and extension steps of TLS, and in the third pathway, Polζ would extend from the nucleotide inserted opposite 1-MeA by an as yet unidentified Pol. Whereas by pushing 1-MeA into the syn conformation and by forming Hoogsteen base pair with the T residue, Polι would carry out TLS opposite 1-MeA, the ability of Polη to replicate through 1-MeA suggests that despite its need for Watson-Crick hydrogen bonding, Polη can stabilize the adduct in its active site. Remarkably, even though Pols η and ι are quite error-prone at inserting nucleotides opposite 1-MeA, TLS opposite this lesion in human cells occurs in a highly error-free fashion. This suggests that the in vivo fidelity of TLS Pols is regulated by factors such as post-translational modifications, protein-protein interactions, and possibly others. PMID:26491020

Clinical correlations of infliximab trough levels and antibodies to infliximab in South Korean patients with Crohn’s disease

PubMed Central

Oh, Eun Hye; Ko, Dae-Hyun; Seo, Hyungil; Chang, Kiju; Kim, Gwang-Un; Song, Eun Mi; Seo, Myeongsook; Lee, Ho-Su; Hwang, Sung Wook; Yang, Dong-Hoon; Ye, Byong Duk; Byeon, Jeong-Sik; Myung, Seung-Jae; Yang, Suk-Kyun; Park, Sang Hyoung

2017-01-01

AIM To investigate the clinical implications of infliximab trough levels (IFX-TLs) and antibodies to infliximab (ATI) levels in Crohn’s disease (CD) patients in Asian countries. METHODS IFX-TL and ATI level were measured using prospectively collected samples obtained with informed consent from CD patients being treated at Asan Medical Center, South Korea. We analyzed the correlations between IFX-TLs/ATI levels and the clinical activity of CD (quiescent vs active disease) based on the CD activity index, C-reactive protein level, and physician’s judgment of patients’ clinical status at enrollment. The impact of concomitant immunomodulators was also investigated. RESULTS This study enrolled 138 patients with CD (84 with quiescent and 54 with active disease). In patients with quiescent and active diseases, the median IFX-TLs were 1.423 μg/mL and 0.163 μg/mL, respectively (P < 0.001) and the median ATI levels were 8.064 AU/mL and 11.209 AU/mL, respectively (P < 0.001). In the ATI-negative and -positive groups, the median IFX-TLs were 1.415 μg/mL and 0.141 μg/mL, respectively (P < 0.001). In patients with and without concomitant immunomodulator use, there were no differences in IFX-TLs (0.632 μg/mL and 1.150 μg/mL, respectively; P = 0.274) or ATI levels (8.655 AU/mL and 9.017 AU/mL, respectively; P = 0.083). CONCLUSION IFX-TL/ATI levels were well correlated with the clinical activity in South Korean CD patients. Our findings support the usefulness of IFX-TLs/ATI levels in treating CD patients receiving IFX in clinical practice. PMID:28293096

Animal source food intake and association with blood cholesterol, glycerophospholipids and sphingolipids in a northern Swedish population.

PubMed

Igl, Wilmar; Kamal-Eldin, Afaf; Johansson, Asa; Liebisch, Gerhard; Gnewuch, Carsten; Schmitz, Gerd; Gyllensten, Ulf

2013-01-01

The high intake of game meat in populations with a subsistence-based diet may affect their blood lipids and health status. To examine the association between diet and circulating levels of blood lipid levels in a northern Swedish population. We compared a group with traditional lifestyle (TLS) based on reindeer herding (TLS group) with those from the same area with a non-traditional lifestyle (NTLS) typical of more industrialized regions of Sweden (NTLS group). The analysis was based on self-reported intake of animal source food (i.e. non-game meat, game meat, fish, dairy products and eggs) and the serum blood level of a number of lipids [total cholesterol (TC), low-density lipoprotein cholesterol (LDL), high-density lipoprotein cholesterol (HDL), triglycerides (TG), glycerophospholipids and sphingolipids]. The TLS group had higher cholesterol, LDL and HDL levels than the reference group. Of the TLS group, 65% had cholesterol levels above the threshold for increased risk of coronary heart disease (≥ 240 mg/dl), as compared to 38% of the NTLS group. Self-reported consumption of game meat was positively associated with TC and LDL. The high game meat consumption of the TLS group is associated with increased cholesterol levels. High intake of animal protein and fat and low fibre is known to increase the risk of cardiovascular disease, but other studies of the TLS in northern Sweden have shown comparable incidences of cardiovascular disease to the reference (NTLS) group from the same geographical area. This indicates that factors other than TC influence disease risk. One such possible factor is dietary phospholipids, which are also found in high amounts specifically in game meat and have been shown to inhibit cholesterol absorption.

Quantifying Vegetation Structure with Lightweight, Rapid-Scanning Terrestrial Lidar

NASA Astrophysics Data System (ADS)

Paynter, I.; Genest, D.; Saenz, E. J.; Strahler, A. H.; Li, Z.; Peri, F.; Schaaf, C.

2016-12-01

Light Detection and Ranging (lidar) is proving a competent technology for observing vegetation structure. Terrestrial laser scanners (TLS) are ground-based instruments which utilize hundreds of thousands to millions of lidar observations to provide detailed structural and reflective information of their surroundings. TLS has enjoyed initial success as a validation tool for satellite and airborne estimates of vegetation structure, and are producing independent estimates with increasing accuracy. Reconstruction techniques for TLS observations of vegetation have also improved rapidly, especially for trees. However, uncertainties and challenges still remain in TLS modelling of vegetation structure, especially in geometrically complex ecosystems such as tropical forests (where observation extent and density is hampered by occlusion) and highly temporally dynamic coastal ecosystems (such as saltmarshes and mangroves), where observations may be restricted to narrow microstates. Some of these uncertainties can be mitigated, and challenges met, through the use of lidar instruments optimized for favorable deployment logistics through low weight, rapid scanning, and improved durability. We have conducted studies of vegetation structure in temperate and tropical forests, saltmarshes and mangroves, utilizing a highly portable TLS with considerable deployment flexibility, the Compact Biomass Lidar (CBL). We show results from studies in the temperate Long Term Ecological Research site of Harvard Forest (MA, USA); the tropical forested long-term Carbono sites of La Selva Biological Station (Sarapiqui, Costa Rica); and the saltmarsh LTER of Plum Island (MA, USA). These results demonstrate the improvements to observations in these ecosystems which are facilitated by the specifications of the CBL (and similar TLS) which are optimized for favorable deployment logistics and flexibility. We show the benefits of increased numbers of scanning positions, and specialized deployment platforms to meet ecosystem challenges.

Do morphemes matter when reading compound words with transposed letters? Evidence from eye-tracking and event-related potentials

DOE PAGES

Stites, Mallory C.; Federmeier, Kara D.; Christianson, Kiel

2016-08-06

We investigate the online processing consequences of encountering compound words with transposed letters (TLs), in order to determine if cross-morpheme TLs are more disruptive to reading than those within a single morpheme, as would be predicted by accounts of obligatory morpho-orthopgrahic decomposition. Two measures of online processing, eye movements and event-related potentials (ERPs), were collected in separate experiments. Participants read sentences containing correctly spelled compound words (cupcake), or compounds with TLs occurring either across morphemes (cucpake) or within one morpheme (cupacke). Results showed that between- and within-morpheme transpositions produced equal processing costs in both measures, in the form of longermore » reading times (Experiment 1) and a late posterior positivity (Experiment 2) that did not differ between conditions. Our findings converge to suggest that within- and between-morpheme TLs are equally disruptive to recognition, providing evidence against obligatory morpho-orthographic processing and in favour of whole-word access of English compound words during sentence reading.« less

Do Morphemes Matter when Reading Compound Words with Transposed Letters? Evidence from Eye-Tracking and Event-Related Potentials

PubMed Central

Stites, Mallory C.; Federmeier, Kara D.; Christianson, Kiel

2017-01-01

The current study investigates the online processing consequences of encountering compound words with transposed letters (TLs), to determine if TLs that cross morpheme boundaries are more disruptive to reading than those within a single morpheme, as would be predicted by accounts of obligatory morpho-orthopgrahic decomposition. Two measures of online processing, eye movements and event-related potentials (ERPs), were collected in separate experiments. Participants read sentences containing correctly spelled compound words (cupcake), or compounds with TLs occurring either across morpheme boundaries (cucpake) or within one morpheme (cupacke). Results showed that between- and within-morpheme transpositions produced equal processing costs in both measures, in the form of longer reading times (Experiment 1) and a late posterior positivity (Experiment 2) that did not differ between conditions. Findings converge to suggest that within- and between-morpheme TLs are equally disruptive to recognition, providing evidence against obligatory morpho-orthographic processing and in favor of whole-word access of English compound words during sentence reading. PMID:28791313

Measuring Leaf Water Content Using Multispectral Terrestrial Laser Scanning

NASA Astrophysics Data System (ADS)

Junttila, S.; Vastaranta, M.; Linnakoski, R.; Sugano, J.; Kaartinen, H.; Kukko, A.; Holopainen, M.; Hyyppä, H.; Hyyppä, J.

2017-10-01

Climate change is increasing the amount and intensity of disturbance events, i.e. drought, pest insect outbreaks and fungal pathogens, in forests worldwide. Leaf water content (LWC) is an early indicator of tree stress that can be measured remotely using multispectral terrestrial laser scanning (MS-TLS). LWC affects leaf reflectance in the shortwave infrared spectrum which can be used to predict LWC from spatially explicit MS-TLS intensity data. Here, we investigated the relationship between LWC and MS-TLS intensity features at 690 nm, 905 nm and 1550 nm wavelengths with Norway spruce seedlings in greenhouse conditions. We found that a simple ratio of 905 nm and 1550 nm wavelengths was able to explain 84 % of the variation (R2) in LWC with a respective prediction accuracy of 0.0041 g/cm2. Our results showed that MS-TLS can be used to estimate LWC with a reasonable accuracy in environmentally stable conditions.

Spontaneous tumour lysis syndrome secondary to the transformation of chronic myelomonocytic leukaemia into acute myeloid leukaemia.

PubMed

Langridge, Alexander; Musgrave, Kathryn; Upadhye, Yogesh

2016-03-09

A 78-year-old man, with a 6-year history of stable chronic myelomonocytic leukaemia (CMML), presented with general deterioration and worsening pancytopenia. Bone marrow biopsy showed that his disease had transformed into acute myeloid leukaemia (AML). He was started on a supportive transfusion regimen and did not receive any chemotherapy or corticosteroids. Several weeks later, he developed acute renal failure and was admitted to a medical admissions ward. Spontaneous tumour lysis syndrome (sTLS, grade 1) was diagnosed, as per the Cairo and Bishop criteria. He was treated with intravenous fluids, rasburicase and allopurinol. His renal function improved and he recovered from the sTLS. The authors believe that this is the first published case of sTLS occurring as a result of CMML transforming into AML; it highlights the importance of recognising sTLS as a cause of renal failure and electrolyte disturbance before cancer treatment begins. 2016 BMJ Publishing Group Ltd.

Do morphemes matter when reading compound words with transposed letters? Evidence from eye-tracking and event-related potentials

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stites, Mallory C.; Federmeier, Kara D.; Christianson, Kiel

We investigate the online processing consequences of encountering compound words with transposed letters (TLs), in order to determine if cross-morpheme TLs are more disruptive to reading than those within a single morpheme, as would be predicted by accounts of obligatory morpho-orthopgrahic decomposition. Two measures of online processing, eye movements and event-related potentials (ERPs), were collected in separate experiments. Participants read sentences containing correctly spelled compound words (cupcake), or compounds with TLs occurring either across morphemes (cucpake) or within one morpheme (cupacke). Results showed that between- and within-morpheme transpositions produced equal processing costs in both measures, in the form of longermore » reading times (Experiment 1) and a late posterior positivity (Experiment 2) that did not differ between conditions. Our findings converge to suggest that within- and between-morpheme TLs are equally disruptive to recognition, providing evidence against obligatory morpho-orthographic processing and in favour of whole-word access of English compound words during sentence reading.« less

Evaluating and redesigning teaching learning sequences at the introductory physics level

NASA Astrophysics Data System (ADS)

Guisasola, Jenaro; Zuza, Kristina; Ametller, Jaume; Gutierrez-Berraondo, José

2017-12-01

In this paper we put forward a proposal for the design and evaluation of teaching and learning sequences in upper secondary school and university. We will connect our proposal with relevant contributions on the design of teaching sequences, ground it on the design-based research methodology, and discuss how teaching and learning sequences designed according to our proposal relate to learning progressions. An iterative methodology for evaluating and redesigning the teaching and learning sequence (TLS) is presented. The proposed assessment strategy focuses on three aspects: (a) evaluation of the activities of the TLS, (b) evaluation of learning achieved by students in relation to the intended objectives, and (c) a document for gathering the difficulties found when implementing the TLS to serve as a guide to teachers. Discussion of this guide with external teachers provides feedback used for the TLS redesign. The context of our implementation and evaluation is an innovative calculus-based physics course for first-year engineering and science degree students at the University of the Basque Country.

Filtering Photogrammetric Point Clouds Using Standard LIDAR Filters Towards DTM Generation

NASA Astrophysics Data System (ADS)

Zhang, Z.; Gerke, M.; Vosselman, G.; Yang, M. Y.

2018-05-01

Digital Terrain Models (DTMs) can be generated from point clouds acquired by laser scanning or photogrammetric dense matching. During the last two decades, much effort has been paid to developing robust filtering algorithms for the airborne laser scanning (ALS) data. With the point cloud quality from dense image matching (DIM) getting better and better, the research question that arises is whether those standard Lidar filters can be used to filter photogrammetric point clouds as well. Experiments are implemented to filter two dense matching point clouds with different noise levels. Results show that the standard Lidar filter is robust to random noise. However, artefacts and blunders in the DIM points often appear due to low contrast or poor texture in the images. Filtering will be erroneous in these locations. Filtering the DIM points pre-processed by a ranking filter will bring higher Type II error (i.e. non-ground points actually labelled as ground points) but much lower Type I error (i.e. bare ground points labelled as non-ground points). Finally, the potential DTM accuracy that can be achieved by DIM points is evaluated. Two DIM point clouds derived by Pix4Dmapper and SURE are compared. On grassland dense matching generates points higher than the true terrain surface, which will result in incorrectly elevated DTMs. The application of the ranking filter leads to a reduced bias in the DTM height, but a slightly increased noise level.

Impact of Surface Active Ionic Liquids on the Cloud Points of Nonionic Surfactants and the Formation of Aqueous Micellar Two-Phase Systems.

PubMed

Vicente, Filipa A; Cardoso, Inês S; Sintra, Tânia E; Lemus, Jesus; Marques, Eduardo F; Ventura, Sónia P M; Coutinho, João A P

2017-09-21

Aqueous micellar two-phase systems (AMTPS) hold a large potential for cloud point extraction of biomolecules but are yet poorly studied and characterized, with few phase diagrams reported for these systems, hence limiting their use in extraction processes. This work reports a systematic investigation of the effect of different surface-active ionic liquids (SAILs)-covering a wide range of molecular properties-upon the clouding behavior of three nonionic Tergitol surfactants. Two different effects of the SAILs on the cloud points and mixed micelle size have been observed: ILs with a more hydrophilic character and lower critical packing parameter (CPP < 1 / 2 ) lead to the formation of smaller micelles and concomitantly increase the cloud points; in contrast, ILs with a more hydrophobic character and higher CPP (CPP ≥ 1) induce significant micellar growth and a decrease in the cloud points. The latter effect is particularly interesting and unusual for it was accepted that cloud point reduction is only induced by inorganic salts. The effects of nonionic surfactant concentration, SAIL concentration, pH, and micelle ζ potential are also studied and rationalized.

Interaction between the Rev1 C-terminal Domain and the PolD3 Subunit of Polζ Suggests a Mechanism of Polymerase Exchange upon Rev1/Polζ-Dependent Translesion Synthesis

PubMed Central

Pustovalova, Yulia; Magalhães, Mariana T. Q.; D’Souza, Sanjay; Rizzo, Alessandro A.; Korza, George; Walker, Graham C.; Korzhnev, Dmitry M.

2016-01-01

Translesion synthesis (TLS) is a mutagenic branch of cellular DNA damage tolerance that enables bypass replication over DNA lesions carried out by specialized low-fidelity DNA polymerases. The replicative bypass of most types of DNA damage is performed in a two-step process of Rev1/Polζ-dependent TLS. In the first step, a Y-family TLS enzyme, typically Polη, Polι or Polκ, inserts a nucleotide across DNA lesion. In the second step, a four-subunit B-family DNA polymerase Polζ (Rev3/Rev7/PolD2/PolD3 complex) extends the distorted DNA primer-template. The coordinated action of error-prone TLS enzymes is regulated through their interactions with the two scaffold proteins, the sliding clamp PCNA and the TLS polymerase Rev1. Rev1 interactions with all other TLS enzymes are mediated by its C-terminal domain (Rev1-CT), which can simultaneously bind the Rev7 subunit of Polζ and Rev1-interacting regions (RIRs) from Polη, Polι or Polκ. In this work, we identified a previously unknown RIR motif in the C-terminal part of PolD3 subunit of Polζ whose interaction with the Rev1-CT is among the tightest mediated by RIR motifs. Three-dimensional structure of the Rev1-CT/PolD3-RIR complex determined by NMR spectroscopy revealed a structural basis for the relatively high affinity of this interaction. The unexpected discovery of PolD3-RIR motif suggests a mechanism of 'inserter' to 'extender' DNA polymerase switch upon Rev1/Polζ-dependent TLS, in which the PolD3-RIR binding to the Rev1-CT (i) helps displace the 'inserter' Polη, Polι or Polκ from its complex with Rev1, and (ii) facilitates assembly of the four-subunit 'extender' Polζ through simultaneous interaction of Rev1-CT with Rev7 and PolD3 subunits. PMID:26982350

Design of relative motion and attitude profiles for three-dimensional resident space object imaging with a laser rangefinder

NASA Astrophysics Data System (ADS)

Nayak, M.; Beck, J.; Udrea, B.

This paper focuses on the aerospace application of a single beam laser rangefinder (LRF) for 3D imaging, shape detection, and reconstruction in the context of a space-based space situational awareness (SSA) mission scenario. The primary limitation to 3D imaging from LRF point clouds is the one-dimensional nature of the single beam measurements. A method that combines relative orbital motion and scanning attitude motion to generate point clouds has been developed and the design and characterization of multiple relative motion and attitude maneuver profiles are presented. The target resident space object (RSO) has the shape of a generic telecommunications satellite. The shape and attitude of the RSO are unknown to the chaser satellite however, it is assumed that the RSO is un-cooperative and has fixed inertial pointing. All sensors in the metrology chain are assumed ideal. A previous study by the authors used pure Keplerian motion to perform a similar 3D imaging mission at an asteroid. A new baseline for proximity operations maneuvers for LRF scanning, based on a waypoint adaptation of the Hill-Clohessy-Wiltshire (HCW) equations is examined. Propellant expenditure for each waypoint profile is discussed and combinations of relative motion and attitude maneuvers that minimize the propellant used to achieve a minimum required point cloud density are studied. Both LRF strike-point coverage and point cloud density are maximized; the capability for 3D shape registration and reconstruction from point clouds generated with a single beam LRF without catalog comparison is proven. Next, a method of using edge detection algorithms to process a point cloud into a 3D modeled image containing reconstructed shapes is presented. Weighted accuracy of edge reconstruction with respect to the true model is used to calculate a qualitative “ metric” that evaluates effectiveness of coverage. Both edge recognition algorithms and the metric are independent of point cloud densit- , therefore they are utilized to compare the quality of point clouds generated by various attitude and waypoint command profiles. The RSO model incorporates diverse irregular protruding shapes, such as open sensor covers, instrument pods and solar arrays, to test the limits of the algorithms. This analysis is used to mathematically prove that point clouds generated by a single-beam LRF can achieve sufficient edge recognition accuracy for SSA applications, with meaningful shape information extractable even from sparse point clouds. For all command profiles, reconstruction of RSO shapes from the point clouds generated with the proposed method are compared to the truth model and conclusions are drawn regarding their fidelity.

An Efficient Method to Create Digital Terrain Models from Point Clouds Collected by Mobile LiDAR Systems

NASA Astrophysics Data System (ADS)

Gézero, L.; Antunes, C.

2017-05-01

The digital terrain models (DTM) assume an essential role in all types of road maintenance, water supply and sanitation projects. The demand of such information is more significant in developing countries, where the lack of infrastructures is higher. In recent years, the use of Mobile LiDAR Systems (MLS) proved to be a very efficient technique in the acquisition of precise and dense point clouds. These point clouds can be a solution to obtain the data for the production of DTM in remote areas, due mainly to the safety, precision, speed of acquisition and the detail of the information gathered. However, the point clouds filtering and algorithms to separate "terrain points" from "no terrain points", quickly and consistently, remain a challenge that has caught the interest of researchers. This work presents a method to create the DTM from point clouds collected by MLS. The method is based in two interactive steps. The first step of the process allows reducing the cloud point to a set of points that represent the terrain's shape, being the distance between points inversely proportional to the terrain variation. The second step is based on the Delaunay triangulation of the points resulting from the first step. The achieved results encourage a wider use of this technology as a solution for large scale DTM production in remote areas.

3-D Survey Applied to Industrial Archaeology by Tls Methodology

NASA Astrophysics Data System (ADS)

Monego, M.; Fabris, M.; Menin, A.; Achilli, V.

2017-05-01

This work describes the three-dimensional survey of "Ex Stazione Frigorifera Specializzata": initially used for agricultural storage, during the years it was allocated to different uses until the complete neglect. The historical relevance and the architectural heritage that this building represents has brought the start of a recent renovation project and functional restoration. In this regard it was necessary a global 3-D survey that was based on the application and integration of different geomatic methodologies (mainly terrestrial laser scanner, classical topography, and GNSS). The acquisitions of point clouds was performed using different laser scanners: with time of flight (TOF) and phase shift technologies for the distance measurements. The topographic reference network, needed for scans alignment in the same system, was measured with a total station. For the complete survey of the building, 122 scans were acquired and 346 targets were measured from 79 vertices of the reference network. Moreover, 3 vertices were measured with GNSS methodology in order to georeference the network. For the detail survey of machine room were executed 14 scans with 23 targets. The 3-D global model of the building have less than one centimeter of error in the alignment (for the machine room the error in alignment is not greater than 6 mm) and was used to extract products such as longitudinal and transversal sections, plans, architectural perspectives, virtual scans. A complete spatial knowledge of the building is obtained from the processed data, providing basic information for restoration project, structural analysis, industrial and architectural heritage valorization.

Metric Survey and Bim Technologies to Record Decay Conditions

NASA Astrophysics Data System (ADS)

Lo Turco, M.; Mattone, M.; Rinaudo, F.

2017-05-01

The paper proposes a method able to describe, classify and organize information assets concerned with Architectural Heritage, through the use of integrated survey procedures, mainly based on Terrestrial Laser Scanner (TLS). The point clouds are then imported into the Building Information Modeling (BIM) software to start with the modeling phase. With regard to this issue, in the last period Building Information Modeling is emerging as the most reliable method to manage architectural design and building processes. Literature supplies both theoretical approaches and several practical applications. However, very little researches are devoted to BIM applied to historical architecture, even if some initial results indicate the actual HBIM (Historic/Heritage BIM) as a possible instrument for the design of an intervention aimed at the conservation of the Cultural Heritage. The focus of the research is the creation of parametric objects representing the preservation status of materials and building components: 3D modeling of decays in the BIM platform ensures to enrich the related database with graphic, geometric and alphanumeric data that can be effectively used to design and manage future interventions. The added value consists in its capability to associate new parameters that describe both the state of conservation of the materials and the detailed description of interventions needed to restore the building. The analyzed case study belongs to Ferrovie dello Stato (the main Italian Railways company) and it is part of the maintenance area, which was originally constituted by a roundhouse containing 51 sheltered railroad tracks and two big sheds.

Evaluation of terrestrial photogrammetric point clouds derived from thermal imagery

NASA Astrophysics Data System (ADS)

Metcalf, Jeremy P.; Olsen, Richard C.

2016-05-01

Computer vision and photogrammetric techniques have been widely applied to digital imagery producing high density 3D point clouds. Using thermal imagery as input, the same techniques can be applied to infrared data to produce point clouds in 3D space, providing surface temperature information. The work presented here is an evaluation of the accuracy of 3D reconstruction of point clouds produced using thermal imagery. An urban scene was imaged over an area at the Naval Postgraduate School, Monterey, CA, viewing from above as with an airborne system. Terrestrial thermal and RGB imagery were collected from a rooftop overlooking the site using a FLIR SC8200 MWIR camera and a Canon T1i DSLR. In order to spatially align each dataset, ground control points were placed throughout the study area using Trimble R10 GNSS receivers operating in RTK mode. Each image dataset is processed to produce a dense point cloud for 3D evaluation.

Rasburicase-induced Hemolytic Anemia in an Adolescent With Unknown Glucose-6-Phosphate Dehydrogenase Deficiency.

PubMed

Akande, Manzilat; Audino, Anthony N; Tobias, Joseph D

2017-01-01

Rasburicase, used in the prevention and treatment of tumor lysis syndrome (TLS), may cause hemolytic anemia and methemoglobinemia in patients with glucose-6-phosphate dehydrogenase (G6PD) deficiency. Although routine screening for G6PD deficiency has been recommended, given the turnaround time for test results and the urgency to treat TLS, such screening may not be feasible. We report a case of rasburicase-induced hemolytic anemia without methemoglobinemia in an adolescent with T-cell lymphoblastic lymphoma, TLS, and previously unrecognized G6PD deficiency. Previous reports of hemolytic anemia with rasburicase are reviewed, mechanisms discussed, and preventative strategies presented.

Rock and stone weathering at Citadel fortifications, Gozo (Malta): benefits from terrestrial laser scanning combined with conventional investigations

NASA Astrophysics Data System (ADS)

Tapete, D.; Gigli, G.; Mugnai, F.; Vannocci, P.; Pecchioni, E.; Morelli, S.; Fanti, R.; Casagli, N.

2012-04-01

Military architecture heritage is frequently built on rock masses affected by slope instability and weathering processes, which progressively undermine the foundations and cause collapses and toppling of the masonries. The latter can be also weakened by alteration of the stone surfaces, as a consequence of the interactions with the local environmental conditions. These conservation issues are emphasized for those sites, whose susceptibility to structural damages is also due to the similarity between the lithotypes constituting the geologic substratum and the construction materials. Effective solutions for the protection from such a type of phenomena can be achieved if the whole "rock mass - built heritage system" is analyzed. In this perspective, we propose a new approach for the study of the weathering processes affecting historic hilltop sites, taking benefits from the combination of terrestrial laser scanning (TLS) and conventional investigations, the latter including geotechnical and minero-petrographic analyses. In particular, the results here presented were obtained from specific tests on the fortifications of Citadel, Gozo (Malta), performed in co-operation with the Restoration Unit, Works Division, Maltese Ministry for Resources and Rural Affairs and the private company Politecnica Ingegneria e Architettura. The Citadel fortifications are built at the top of a relatively stiff and brittle limestone plate, formed by Upper Coralline Limestone (UCL) and overlying a thick Blue Clay (BC) layer. Differential weathering creates extensively fractured ledges on the cap and erosion niches in the strata beneath, thereby favouring block detachment, even rockfall events, such as the last one occurred in 2001. The locally quarried Globigerina Limestone (GL), historically employed in restoration masonries, is also exposed to alveolization and powdering, and several collapses damaged the underwalling interventions. Since the erosion pattern distribution suggested a correlation with the structural setting of the rock mass and the mineralogical properties of the limestones, an overall weathering study was carried out, by combining surface surveys with analyses of the inner structure. A holistic TLS point cloud of Citadel, produced by Consorzio Ferrara Ricerche of the University of Ferrara and made available by the Restoration Unit, was exploited to perform a 3D quantitative kinematic analysis of the entire rock mass. Each sector was classified in relation to the probability of occurrence of instability mechanisms, among which plane failure, block toppling and wedge failure. The latter was found associated with the highest index measured (30%), followed by the flexural toppling mechanism (17%), providing a confirmation to the field survey and the results of geotechnical analyses. The integration with geologic and diagnostic investigations (e.g., boreholes, thin section observations) highlighted the intrinsic weaknesses of the rocks and stones to weathering, with a quite unexpected higher susceptibility to erosion and disaggregation characterizing the inner layers. Hence, the textural appearance of the erosion surfaces, the rock/stone structural properties and the TLS-based classification of the cliff sectors were mutually correlated, and the most unstable areas were mapped. As main implication for the conservation, on site monitoring system (i.e., biaxial inclinometers and crack gauges) was installed and targeted restorations have been properly designed.

THz limb sounder (TLS) for lower thermospheric wind, oxygen density, and temperature

NASA Astrophysics Data System (ADS)

Wu, Dong L.; Yee, Jeng-Hwa; Schlecht, Erich; Mehdi, Imran; Siles, Jose; Drouin, Brian J.

2016-07-01

Neutral winds are one of the most critical measurements in the lower thermosphere and E region ionosphere (LTEI) for understanding complex electrodynamic processes and ion-neutral interactions. We are developing a high-sensitivity, low-power, noncryogenic 2.06 THz Schottky receiver to measure wind profiles at 100-140 km. The new technique, THz limb sounder (TLS), aims to measure LTEI winds by resolving the wind-induced Doppler shift of 2.06 THz atomic oxygen (OI) emissions. As a transition between fine structure levels in the ground electronic state, the OI emission is in local thermodynamic equilibrium (LTE) at altitudes up to 350 km. This LTE property, together with day-and-night capability and small line-of-sight gradient, makes the OI limb sounding a very attractive technique for neutral wind observations. In addition to the wind measurement, TLS can also retrieve [OI] density and neutral temperature in the LTEI region. TLS leverages rapid advances in THz receiver technologies including subharmonically pumped (SHP) mixers and Schottky-diode-based power multipliers. Current SHP Schottky receivers have produced good sensitivity for THz frequencies at ambient environment temperatures (120-150 K), which are achievable through passively cooling in spaceflight. As an emerging technique, TLS can fill the critical data gaps in the LTEI neutral wind observations to enable detailed studies on the coupling and dynamo processes between charged and neutral molecules.

THz Limb Sounder (TLS) for Lower Thermospheric Wind, Oxygen Density, and Temperature

NASA Technical Reports Server (NTRS)

Wu, Dong L.; Yee, Jeng-Hwa; Schlecht, Erich; Mehdi, Imran; Siles, Jose; Drouin, Brian J.

2016-01-01

Neutral winds are one of the most critical measurements in the lower thermosphere and E region ionosphere (LTEI) for understanding complex electrodynamic processes and ion-neutral interactions. We are developing a high-sensitivity, low-power, noncryogenic 2.06 THz Schottky receiver to measure wind profiles at 100-140 km. The new technique, THz limb sounder (TLS), aims to measure LTEI winds by resolving the wind-induced Doppler shift of 2.06 THz atomic oxygen (OI) emissions. As a transition between fine structure levels in the ground electronic state, the OI emission is in local thermodynamic equilibrium(LTE) at altitudes up to 350km. This LTE property, together with day-and-night capability and small line-of-sight gradient, makes the OI limb sounding a very attractive technique for neutral wind observations. In addition to the wind measurement, TLS can also retrieve [OI] density and neutral temperature in the LTEI region. TLS leverages rapid advances in THz receiver technologies including subharmonically pumped (SHP)mixers and Schottky-diode-based power multipliers. Current SHP Schottky receivers have produced good sensitivity for THz frequencies at ambient environment temperatures (120-150 K), which are achievable through passively cooling in spaceflight. As an emerging technique, TLS can fill the critical data gaps in the LTEI neutral wind observations to enable detailed studies on the coupling and dynamo processes between charged and neutral molecules.

Effect of target color and scanning geometry on terrestrial LiDAR point-cloud noise and plane fitting

NASA Astrophysics Data System (ADS)

Bolkas, Dimitrios; Martinez, Aaron

2018-01-01

Point-cloud coordinate information derived from terrestrial Light Detection And Ranging (LiDAR) is important for several applications in surveying and civil engineering. Plane fitting and segmentation of target-surfaces is an important step in several applications such as in the monitoring of structures. Reliable parametric modeling and segmentation relies on the underlying quality of the point-cloud. Therefore, understanding how point-cloud errors affect fitting of planes and segmentation is important. Point-cloud intensity, which accompanies the point-cloud data, often goes hand-in-hand with point-cloud noise. This study uses industrial particle boards painted with eight different colors (black, white, grey, red, green, blue, brown, and yellow) and two different sheens (flat and semi-gloss) to explore how noise and plane residuals vary with scanning geometry (i.e., distance and incidence angle) and target-color. Results show that darker colors, such as black and brown, can produce point clouds that are several times noisier than bright targets, such as white. In addition, semi-gloss targets manage to reduce noise in dark targets by about 2-3 times. The study of plane residuals with scanning geometry reveals that, in many of the cases tested, residuals decrease with increasing incidence angles, which can assist in understanding the distribution of plane residuals in a dataset. Finally, a scheme is developed to derive survey guidelines based on the data collected in this experiment. Three examples demonstrate that users should consider instrument specification, required precision of plane residuals, required point-spacing, target-color, and target-sheen, when selecting scanning locations. Outcomes of this study can aid users to select appropriate instrumentation and improve planning of terrestrial LiDAR data-acquisition.

Point Cloud Classification of Tesserae from Terrestrial Laser Data Combined with Dense Image Matching for Archaeological Information Extraction

NASA Astrophysics Data System (ADS)

Poux, F.; Neuville, R.; Billen, R.

2017-08-01

Reasoning from information extraction given by point cloud data mining allows contextual adaptation and fast decision making. However, to achieve this perceptive level, a point cloud must be semantically rich, retaining relevant information for the end user. This paper presents an automatic knowledge-based method for pre-processing multi-sensory data and classifying a hybrid point cloud from both terrestrial laser scanning and dense image matching. Using 18 features including sensor's biased data, each tessera in the high-density point cloud from the 3D captured complex mosaics of Germigny-des-prés (France) is segmented via a colour multi-scale abstraction-based featuring extracting connectivity. A 2D surface and outline polygon of each tessera is generated by a RANSAC plane extraction and convex hull fitting. Knowledge is then used to classify every tesserae based on their size, surface, shape, material properties and their neighbour's class. The detection and semantic enrichment method shows promising results of 94% correct semantization, a first step toward the creation of an archaeological smart point cloud.

Quantifying Local Ablation Rates for the Greenland Ice Sheet Using Terrestrial LIDAR

NASA Astrophysics Data System (ADS)

Kershner, C. M.; Pitcher, L. H.; LeWinter, A.; Finnegan, D. C.; Overstreet, B. T.; Miège, C.; Cooper, M. G.; Smith, L. C.; Rennermalm, A. K.

2016-12-01

Quantifying accurate ice surface ablation or melt rates for the Greenland Ice Sheet is important for calibrating and validating surface mass balance models and constraining sea level rise estimates. Common practice is to monitor surface ablation at defined points by manually measuring ice surface lowering in relation to stakes inserted into the ice / snow. However, this method does not account for the effects of local topography, solar zenith angle, and local variations in ice surface albedo/impurities on ablation rates. To directly address these uncertainties, we use a commercially available terrestrial LIDAR scanner (TLS) to monitor daily melt rates in the ablation zone of the Greenland Ice Sheet for 7 consecutive days in July 2016. Each survey is registered to previous scans using retroreflective cylinders and is georeferenced using static GPS measurements. Bulk ablation will be calculated using multi-temporal differential LIDAR techniques, and difficulties in referencing scans and collecting high quality surveys in this dynamic environment will be discussed, as well as areas for future research. We conclude that this novel application of TLS technology provides a spatially accurate, higher fidelity measurements of ablation across a larger area with less interpolation and less time spent than using traditional manual point based methods alone. Furthermore, this sets the stage for direct calibration, validation and cross-comparison with existing airborne (e.g. NASA's Airborne Topographic Mapper - ATM - onboard Operation IceBridge and NASA's Land, Vegetation & Ice Sensor - LVIS) and forthcoming spaceborne sensors (e.g. NASA's ICESat-2).

Temporally consistent segmentation of point clouds

NASA Astrophysics Data System (ADS)

Owens, Jason L.; Osteen, Philip R.; Daniilidis, Kostas

2014-06-01

We consider the problem of generating temporally consistent point cloud segmentations from streaming RGB-D data, where every incoming frame extends existing labels to new points or contributes new labels while maintaining the labels for pre-existing segments. Our approach generates an over-segmentation based on voxel cloud connectivity, where a modified k-means algorithm selects supervoxel seeds and associates similar neighboring voxels to form segments. Given the data stream from a potentially mobile sensor, we solve for the camera transformation between consecutive frames using a joint optimization over point correspondences and image appearance. The aligned point cloud may then be integrated into a consistent model coordinate frame. Previously labeled points are used to mask incoming points from the new frame, while new and previous boundary points extend the existing segmentation. We evaluate the algorithm on newly-generated RGB-D datasets.

Traffic sign detection in MLS acquired point clouds for geometric and image-based semantic inventory

NASA Astrophysics Data System (ADS)

Soilán, Mario; Riveiro, Belén; Martínez-Sánchez, Joaquín; Arias, Pedro

2016-04-01

Nowadays, mobile laser scanning has become a valid technology for infrastructure inspection. This technology permits collecting accurate 3D point clouds of urban and road environments and the geometric and semantic analysis of data became an active research topic in the last years. This paper focuses on the detection of vertical traffic signs in 3D point clouds acquired by a LYNX Mobile Mapper system, comprised of laser scanning and RGB cameras. Each traffic sign is automatically detected in the LiDAR point cloud, and its main geometric parameters can be automatically extracted, therefore aiding the inventory process. Furthermore, the 3D position of traffic signs are reprojected on the 2D images, which are spatially and temporally synced with the point cloud. Image analysis allows for recognizing the traffic sign semantics using machine learning approaches. The presented method was tested in road and urban scenarios in Galicia (Spain). The recall results for traffic sign detection are close to 98%, and existing false positives can be easily filtered after point cloud projection. Finally, the lack of a large, publicly available Spanish traffic sign database is pointed out.

Teaching/Learning Methods and Students' Classification of Food Items

ERIC Educational Resources Information Center

Hamilton-Ekeke, Joy-Telu; Thomas, Malcolm

2011-01-01

Purpose: This study aims to investigate the effectiveness of a teaching method (TLS (Teaching/Learning Sequence)) based on a social constructivist paradigm on students' conceptualisation of classification of food. Design/methodology/approach: The study compared the TLS model developed by the researcher based on the social constructivist paradigm…

TES/Aura L2 Atmospheric Temperatures Limb V6 (TL2TLS)

Atmospheric Science Data Center

2018-03-01

TES/Aura L2 Atmospheric Temperatures Limb (TL2TLS) News:  TES News ... Level:  L2 Platform:  TES/Aura L2 Atmospheric Temperatures Spatial Coverage:  27 x 23 km Limb ... OPeNDAP Access: OPeNDAP Parameters:  Atmospheric Temperature Temperature Precision Vertical Resolution ...

Teaching Air Pollution in an Authentic Context

ERIC Educational Resources Information Center

Mandrikas, Achilleas; Stavrou, Dimitrios; Skordoulis, Constantine

2017-01-01

This paper describes a teaching-learning sequence (TLS) about air pollution and the findings resulting from its implementation by pre-service elementary teachers (PET) currently undergraduate students of the Department of Primary Education in the National and Kapodistrian University of Athens, Greece. The TLS focused on the relation of air…

a Gross Error Elimination Method for Point Cloud Data Based on Kd-Tree

NASA Astrophysics Data System (ADS)

Kang, Q.; Huang, G.; Yang, S.

2018-04-01

Point cloud data has been one type of widely used data sources in the field of remote sensing. Key steps of point cloud data's pro-processing focus on gross error elimination and quality control. Owing to the volume feature of point could data, existed gross error elimination methods need spend massive memory both in space and time. This paper employed a new method which based on Kd-tree algorithm to construct, k-nearest neighbor algorithm to search, settled appropriate threshold to determine with result turns out a judgement that whether target point is or not an outlier. Experimental results show that, our proposed algorithm will help to delete gross error in point cloud data and facilitate to decrease memory consumption, improve efficiency.

Object Detection using the Kinect

DTIC Science & Technology

2012-03-01

Kinect camera and point cloud data from the Kinect’s structured light stereo system (figure 1). We obtain reasonable results using a single prototype...same manner we present in this report. For example, at Willow Garage , Steder uses a 3-D feature he developed to classify objects directly from point...detecting backpacks using the data available from the Kinect sensor. 4 3.1 Point Cloud Filtering Dense point clouds derived from stereo are notoriously

Tunnel Point Cloud Filtering Method Based on Elliptic Cylindrical Model

NASA Astrophysics Data System (ADS)

Zhua, Ningning; Jiaa, Yonghong; Luo, Lun

2016-06-01

The large number of bolts and screws that attached to the subway shield ring plates, along with the great amount of accessories of metal stents and electrical equipments mounted on the tunnel walls, make the laser point cloud data include lots of non-tunnel section points (hereinafter referred to as non-points), therefore affecting the accuracy for modeling and deformation monitoring. This paper proposed a filtering method for the point cloud based on the elliptic cylindrical model. The original laser point cloud data was firstly projected onto a horizontal plane, and a searching algorithm was given to extract the edging points of both sides, which were used further to fit the tunnel central axis. Along the axis the point cloud was segmented regionally, and then fitted as smooth elliptic cylindrical surface by means of iteration. This processing enabled the automatic filtering of those inner wall non-points. Experiments of two groups showed coincident results, that the elliptic cylindrical model based method could effectively filter out the non-points, and meet the accuracy requirements for subway deformation monitoring. The method provides a new mode for the periodic monitoring of tunnel sections all-around deformation in subways routine operation and maintenance.

Time-lapse systems for embryo incubation and assessment in assisted reproduction.

PubMed

Armstrong, Sarah; Arroll, Nicola; Cree, Lynsey M; Jordan, Vanessa; Farquhar, Cindy

2015-02-27

Embryo incubation and assessment is a vital step in assisted reproductive technology (ART). Traditionally, embryo assessment has been achieved by removing embryos from a conventional incubator daily for assessment of quality by an embryologist, under a light microscope. Over recent years time-lapse systems (TLSs) have been developed which can take digital images of embryos at frequent time intervals. This allows embryologists, with or without the assistance of computer algorithms, to assess the quality of the embryos without physically removing them from the incubator.The potential advantages of a TLS include the ability to maintain a stable culture environment, therefore limiting the exposure of embryos to changes in gas composition, temperature and movement. Additionally a TLS has the potential advantage of improving embryo selection for ART treatment by utilising additional information gained through monitoring embryo development. To determine the effect of a TLS compared to conventional embryo incubation and assessment on clinical outcomes in couples undergoing ART. A comprehensive search of all the major electronic databases, including grey literature, was undertaken in co-ordination with the Trials Search Co-ordinator of the Cochrane Menstrual Disorders and Subfertility Group in July 2014 and repeated in November 2014 to confirm that the review is up to date. Two authors (SA and NA) independently scanned the titles and abstracts of the articles retrieved by the search. Full texts of potentially eligible randomised controlled trials (RCTs) were obtained and examined independently by the authors for their suitability according to the review inclusion criteria. In the case of doubt between the two authors, a third author (LC) was consulted to gain consensus. The selection process is documented with a Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) flow chart. Data were obtained and extracted by two authors. Disagreement was resolved by consensus. Trial authors were contacted by e-mail to obtain further study information and data. All extracted data were dichotomous outcomes and odds ratios (OR) were calculated on an intention-to-treat basis. Where enough data were available, meta-analysis was undertaken. Three studies involving 994 women were found for inclusion. Data from all three studies were used to address comparison one, TLS with or without cell-tracking algorithms versus conventional incubation. No studies were found to address comparison two, TLS utilising cell-tracking algorithms versus TLS not utilising cell-tracking algorithms.There was only one study which reported live birth (n = 76). The results demonstrated no conclusive evidence of a difference in live birth rate per couple randomly assigned to the TLS and conventional incubation arms of the study (OR 1.1, 95% CI 0.45 to 2.73, 1 RCT, n = 76, moderate quality evidence).All three studies reported miscarriage (n = 994). There was no conclusive evidence of a difference in miscarriage rates per couple randomly assigned to the TLS and conventional incubation arms (OR 0.70, 95% CI 0.47 to 1.04, 3 RCTs, n = 994, I(2) = 0%, low quality evidence).Only one study reported stillbirth rates (n = 76). There were equal numbers of stillbirths in both the TLS and conventional incubation arms of the study. Therefore, there was no evidence of a difference in the stillbirth rate per couple randomly assigned to TLS and conventional incubation (OR 1.0, 95% CI 0.13 to 7.49, 1 RCT, moderate quality evidence).All three studies reported clinical pregnancy rates (n = 994). There was no conclusive evidence of a difference in clinical pregnancy rate per couple randomly assigned to the TLS and conventional incubation arms (OR 1.23, 95% CI 0.96 to 1.59, 3 RCTs, n = 994, I(2) = 0%, low quality evidence). None of the included studies reported cumulative clinical pregnancy rates. There is insufficient evidence of differences in live birth, miscarriage, stillbirth or clinical pregnancy to choose between TLS and conventional incubation. Further data explicitly comparing the incubation environment, the algorithm for embryo selection, or both, are required before recommendations for a change of routine practice can be justified.

A Modular Approach to Video Designation of Manipulation Targets for Manipulators

DTIC Science & Technology

2014-05-12

side view of a ray going through a point cloud of a water bottle sitting on the ground. The bottom left image shows the same point cloud after it has...System (ROS), Point Cloud Library (PCL), and OpenRAVE were used to a great extent to help promote reusability of the code developed during this

Integrated Imaging Approaches Supporting the Excavation Activities. Multi-Scale Geospatial Documentation in Hierapolis (tk)

NASA Astrophysics Data System (ADS)

Spanò, A.; Chiabrando, F.; Sammartano, G.; Teppati Losè, L.

2018-05-01

The paper focuses on the exploration of the suitability and the discretization of applicability issues about advanced surveying integrated techniques, mainly based on image-based approaches compared and integrated to range-based ones that have been developed with the use of the cutting-edge solutions tested on field. The investigated techniques integrate both technological devices for 3D data acquisition and thus editing and management systems to handle metric models and multi-dimensional data in a geospatial perspective, in order to innovate and speed up the extraction of information during the archaeological excavation activities. These factors, have been experienced in the outstanding site of the Hierapolis of Phrygia ancient city (Turkey), downstream the 2017 surveying missions, in order to produce high-scale metric deliverables in terms of high-detailed Digital Surface Models (DSM), 3D continuous surface models and high-resolution orthoimages products. In particular, the potentialities in the use of UAV platforms for low altitude acquisitions in aerial photogrammetric approach, together with terrestrial panoramic acquisitions (Trimble V10 imaging rover), have been investigated with a comparison toward consolidated Terrestrial Laser Scanning (TLS) measurements. One of the main purposes of the paper is to evaluate the results offered by the technologies used independently and using integrated approaches. A section of the study in fact, is specifically dedicated to experimenting the union of different sensor dense clouds: both dense clouds derived from UAV have been integrated with terrestrial Lidar clouds, to evaluate their fusion. Different test cases have been considered, representing typical situations that can be encountered in archaeological sites.

Automatic Matching of Large Scale Images and Terrestrial LIDAR Based on App Synergy of Mobile Phone

NASA Astrophysics Data System (ADS)

Xia, G.; Hu, C.

2018-04-01

The digitalization of Cultural Heritage based on ground laser scanning technology has been widely applied. High-precision scanning and high-resolution photography of cultural relics are the main methods of data acquisition. The reconstruction with the complete point cloud and high-resolution image requires the matching of image and point cloud, the acquisition of the homonym feature points, the data registration, etc. However, the one-to-one correspondence between image and corresponding point cloud depends on inefficient manual search. The effective classify and management of a large number of image and the matching of large image and corresponding point cloud will be the focus of the research. In this paper, we propose automatic matching of large scale images and terrestrial LiDAR based on APP synergy of mobile phone. Firstly, we develop an APP based on Android, take pictures and record related information of classification. Secondly, all the images are automatically grouped with the recorded information. Thirdly, the matching algorithm is used to match the global and local image. According to the one-to-one correspondence between the global image and the point cloud reflection intensity image, the automatic matching of the image and its corresponding laser radar point cloud is realized. Finally, the mapping relationship between global image, local image and intensity image is established according to homonym feature point. So we can establish the data structure of the global image, the local image in the global image, the local image corresponding point cloud, and carry on the visualization management and query of image.

Using LIDAR and UAV-derived point clouds to evaluate surface roughness in a gravel-bed braided river (Vénéon river, French Alps)

NASA Astrophysics Data System (ADS)

Vázquez Tarrío, Daniel; Borgniet, Laurent; Recking, Alain; Liebault, Frédéric; Vivier, Marie

2016-04-01

The present research is focused on the Vénéon river at Plan du Lac (Massif des Ecrins, France), an alpine braided gravel bed stream with a glacio-nival hydrological regime. It drains a catchment area of 316 km2. The present research is focused in a 2.5 km braided reach placed immediately upstream of a small hydropower dam. An airbone LIDAR survey was accomplished in October, 2014 by EDF (the company managing the small hydropower dam), and data coming from this LIDAR survey were available for the present research. Point density of the LIDAR-derived 3D-point cloud was between 20-50 points/m2, with a vertical precision of 2-3 cm over flat surfaces. Moreover, between April and Juin, 2015, we carried out a photogrammetrical campaign based in aerial images taken with an UAV-drone. The UAV-derived point-cloud has a point density of 200-300 points/m2, and a vertical precision over flat control surfaces comparable to that of the LIDAR point cloud (2-3 cm). Simultaneously to the UAV campaign, we took several Wolman samples with the aim of characterizing the grain size distribution of bed sediment. Wolman samples were taken following a geomorphological criterion (unit bars, head/tail of compound bars). Furthermore, some of the Wolman samples were repeated with the aim of defining the uncertainty of our sampling protocol. LIDAR and UAV-derived point clouds were treated in order to check whether both point-clouds were correctly co-aligned. After that, we estimated bed roughness using the detrended standard deviation of heights, in a 40-cm window. For all this data treatment we used CloudCompare. Then, we measured the distribution of roughness in the same geomorphological units where we took the Wolman samples, and we compared with the grain size distributions measured in the field: differences between UAV-point cloud roughness distributions and measured-grain size distribution (~1-2 cm) are in the same order of magnitude of the differences found between the repeated Wolman samples (~0.5-1.5 cm). Differences with LIDAR-derived roughness distributions are only slightly higher, which could be due to the lower point density of the LIDAR point clouds.

Automatic Recognition of Indoor Navigation Elements from Kinect Point Clouds

NASA Astrophysics Data System (ADS)

Zeng, L.; Kang, Z.

2017-09-01

This paper realizes automatically the navigating elements defined by indoorGML data standard - door, stairway and wall. The data used is indoor 3D point cloud collected by Kinect v2 launched in 2011 through the means of ORB-SLAM. By contrast, it is cheaper and more convenient than lidar, but the point clouds also have the problem of noise, registration error and large data volume. Hence, we adopt a shape descriptor - histogram of distances between two randomly chosen points, proposed by Osada and merges with other descriptor - in conjunction with random forest classifier to recognize the navigation elements (door, stairway and wall) from Kinect point clouds. This research acquires navigation elements and their 3-d location information from each single data frame through segmentation of point clouds, boundary extraction, feature calculation and classification. Finally, this paper utilizes the acquired navigation elements and their information to generate the state data of the indoor navigation module automatically. The experimental results demonstrate a high recognition accuracy of the proposed method.

A Teaching-Learning Sequence about Weather Map Reading

ERIC Educational Resources Information Center

Mandrikas, Achilleas; Stavrou, Dimitrios; Skordoulis, Constantine

2017-01-01

In this paper a teaching-learning sequence (TLS) introducing pre-service elementary teachers (PET) to weather map reading, with emphasis on wind assignment, is presented. The TLS includes activities about recognition of wind symbols, assignment of wind direction and wind speed on a weather map and identification of wind characteristics in a…

77 FR 39677 - Submission for OMB Review; Comment Request

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-05

... by law to give an Information Sheet to each person from whom they request special census related... of information under the provisions of the Paperwork Reduction Act (44 U.S.C. chapter 35). Agency: U... information for TLs, to schedule interviews for the TLs, to determine the type of TL, and to estimate the...

Study of Uneven Fills to Cure the Coupled-Bunch Instability in SRRC

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chao, Alex W.

2002-08-12

The performance of the 1.5-GeV storage ring light source TLS in SRRC has been limited by a longitudinal coupled-bunch beam instability. To improve the performance of the TLS, the beam instability has to be suppressed. One possible way considered for the TLS to suppress its coupled-bunch instability uses uneven filling patterns according to the theory of Prabhakar[1]. By knowing the harmful high-order-modes (HOMs), a special filling pattern can be designed to utilize either mode coupling or Landau damping to cure beam instability. In TLS the HOMs are contributed from the Doris RF cavity installed in the storage ring. The HOMsmore » of a 3-D Doris cavity was numerically analyzed. Filling patterns with equal bunch current according to theory had been calculated to cure the most harmful HOM. A longitudinal particle tracking program was used to simulate the coupled-bunch beam instability with both the uniform filling and the special designed filling. Filling pattern with unequal bunch current was also studied. The results of the simulation were discussed and compared to the theory.« less

Lesion bypass by S. cerevisiae Pol ζ alone

PubMed Central

Stone, Jana E.; Kumar, Dinesh; Binz, Sara K.; Inase, Aki; Iwai, Shigenori; Chabes, Andrei; Burgers, Peter M.; Kunkel, Thomas A.

2011-01-01

DNA polymerase zeta (Pol ζ) participates in translesion synthesis (TLS) of DNA adducts that stall replication fork progression. Previous studies have led to the suggestion that the primary role of Pol ζ in TLS is to extend primers created when another DNA polymerase inserts nucleotides opposite lesions. Here we test the non-exclusive possibility that Pol ζ can sometimes perform TLS in the absence of any other polymerase. To do so, we quantified the efficiency with which S. cerevisiae Pol ζ bypasses abasic sites, cis-syn cyclobutane pyrimidine dimers and (6-4) photoproducts. In reactions containing dNTP concentrations that mimic those induced by DNA damage, a Pol ζ derivative with phenylalanine substituted for leucine 979 at the polymerase active site bypasses all three lesions at efficiencies between 27–73%. Wild-type Pol ζ also bypasses these lesions, with efficiencies that are lower and depend on the sequence context in which the lesion resides. The results are consistent with the hypothesis that, in addition to extending aberrant termini created by other DNA polymerases, Pol ζ has the potential to be the sole DNA polymerase involved in TLS. PMID:21622032

An ethnographic study of differentiated practice in an operating room.

PubMed

Graff, C; Roberts, K; Thornton, K

1999-01-01

An ethnographic study was conducted to investigate implementation of the clinical nurse III or team leader (TL) role as part of a newly executed nursing differentiated practice model. The six TLs studied were employed in the operating room (OR). Through participant observation, interviews, and document analysis, the TL role--as well as perceptions of the role by the TLs and OR staff--were studied. Problems related to performance of the role and its evolutionary process were delineated. Data analysis involved identifying categories and subcategories of data and developing a coding system to identify themes. Salient themes were related to the culture of the OR. Because of the OR's highly technical environment, the TLs defined their roles in relation to the organizational and technical needs of their surgical service. Refinement of surgeon "preference cards" and "instrument count sheets" was considered the initial priority for the TLs. Various controllable and uncontrollable factors were identified that affected implementation of the new TL role. Findings suggest that introduction of the role requires insight into setting and an emphasis on staging and orientation of employees to the new role.

Ubiquitin mediates the physical and functional interaction between human DNA polymerases η and ι

PubMed Central

McIntyre, Justyna; Vidal, Antonio E.; McLenigan, Mary P.; Bomar, Martha G.; Curti, Elena; McDonald, John P.; Plosky, Brian S.; Ohashi, Eiji; Woodgate, Roger

2013-01-01

Human DNA polymerases η and ι are best characterized for their ability to facilitate translesion DNA synthesis (TLS). Both polymerases (pols) co-localize in ‘replication factories’ in vivo after cells are exposed to ultraviolet light and this co-localization is mediated through a physical interaction between the two TLS pols. We have mapped the polη-ι interacting region to their respective ubiquitin-binding domains (UBZ in polη and UBM1 and UBM2 in polι), and demonstrate that ubiquitination of either TLS polymerase is a prerequisite for their physical and functional interaction. Importantly, while monoubiquitination of polη precludes its ability to interact with proliferating cell nuclear antigen (PCNA), it enhances its interaction with polι. Furthermore, a polι-ubiquitin chimera interacts avidly with both polη and PCNA. Thus, the ubiquitination status of polη, or polι plays a key regulatory function in controlling the protein partners with which each polymerase interacts, and in doing so, determines the efficiency of targeting the respective polymerase to stalled replication forks where they facilitate TLS. PMID:23248005

Towards 3D Matching of Point Clouds Derived from Oblique and Nadir Airborne Imagery

NASA Astrophysics Data System (ADS)

Zhang, Ming

Because of the low-expense high-efficient image collection process and the rich 3D and texture information presented in the images, a combined use of 2D airborne nadir and oblique images to reconstruct 3D geometric scene has a promising market for future commercial usage like urban planning or first responders. The methodology introduced in this thesis provides a feasible way towards fully automated 3D city modeling from oblique and nadir airborne imagery. In this thesis, the difficulty of matching 2D images with large disparity is avoided by grouping the images first and applying the 3D registration afterward. The procedure starts with the extraction of point clouds using a modified version of the RIT 3D Extraction Workflow. Then the point clouds are refined by noise removal and surface smoothing processes. Since the point clouds extracted from different image groups use independent coordinate systems, there are translation, rotation and scale differences existing. To figure out these differences, 3D keypoints and their features are extracted. For each pair of point clouds, an initial alignment and a more accurate registration are applied in succession. The final transform matrix presents the parameters describing the translation, rotation and scale requirements. The methodology presented in the thesis has been shown to behave well for test data. The robustness of this method is discussed by adding artificial noise to the test data. For Pictometry oblique aerial imagery, the initial alignment provides a rough alignment result, which contains a larger offset compared to that of test data because of the low quality of the point clouds themselves, but it can be further refined through the final optimization. The accuracy of the final registration result is evaluated by comparing it to the result obtained from manual selection of matched points. Using the method introduced, point clouds extracted from different image groups could be combined with each other to build a more complete point cloud, or be used as a complement to existing point clouds extracted from other sources. This research will both improve the state of the art of 3D city modeling and inspire new ideas in related fields.

Fast Semantic Segmentation of 3d Point Clouds with Strongly Varying Density

NASA Astrophysics Data System (ADS)

Hackel, Timo; Wegner, Jan D.; Schindler, Konrad

2016-06-01

We describe an effective and efficient method for point-wise semantic classification of 3D point clouds. The method can handle unstructured and inhomogeneous point clouds such as those derived from static terrestrial LiDAR or photogammetric reconstruction; and it is computationally efficient, making it possible to process point clouds with many millions of points in a matter of minutes. The key issue, both to cope with strong variations in point density and to bring down computation time, turns out to be careful handling of neighborhood relations. By choosing appropriate definitions of a point's (multi-scale) neighborhood, we obtain a feature set that is both expressive and fast to compute. We evaluate our classification method both on benchmark data from a mobile mapping platform and on a variety of large, terrestrial laser scans with greatly varying point density. The proposed feature set outperforms the state of the art with respect to per-point classification accuracy, while at the same time being much faster to compute.

A Voxel-Based Approach for Imaging Voids in Three-Dimensional Point Clouds

NASA Astrophysics Data System (ADS)

Salvaggio, Katie N.

Geographically accurate scene models have enormous potential beyond that of just simple visualizations in regard to automated scene generation. In recent years, thanks to ever increasing computational efficiencies, there has been significant growth in both the computer vision and photogrammetry communities pertaining to automatic scene reconstruction from multiple-view imagery. The result of these algorithms is a three-dimensional (3D) point cloud which can be used to derive a final model using surface reconstruction techniques. However, the fidelity of these point clouds has not been well studied, and voids often exist within the point cloud. Voids exist in texturally difficult areas, as well as areas where multiple views were not obtained during collection, constant occlusion existed due to collection angles or overlapping scene geometry, or in regions that failed to triangulate accurately. It may be possible to fill in small voids in the scene using surface reconstruction or hole-filling techniques, but this is not the case with larger more complex voids, and attempting to reconstruct them using only the knowledge of the incomplete point cloud is neither accurate nor aesthetically pleasing. A method is presented for identifying voids in point clouds by using a voxel-based approach to partition the 3D space. By using collection geometry and information derived from the point cloud, it is possible to detect unsampled voxels such that voids can be identified. This analysis takes into account the location of the camera and the 3D points themselves to capitalize on the idea of free space, such that voxels that lie on the ray between the camera and point are devoid of obstruction, as a clear line of sight is a necessary requirement for reconstruction. Using this approach, voxels are classified into three categories: occupied (contains points from the point cloud), free (rays from the camera to the point passed through the voxel), and unsampled (does not contain points and no rays passed through the area). Voids in the voxel space are manifested as unsampled voxels. A similar line-of-sight analysis can then be used to pinpoint locations at aircraft altitude at which the voids in the point clouds could theoretically be imaged. This work is based on the assumption that inclusion of more images of the void areas in the 3D reconstruction process will reduce the number of voids in the point cloud that were a result of lack of coverage. Voids resulting from texturally difficult areas will not benefit from more imagery in the reconstruction process, and thus are identified and removed prior to the determination of future potential imaging locations.

New perspectives on the ecology of tree structure and tree communities through terrestrial laser scanning.

PubMed

Malhi, Yadvinder; Jackson, Tobias; Patrick Bentley, Lisa; Lau, Alvaro; Shenkin, Alexander; Herold, Martin; Calders, Kim; Bartholomeus, Harm; Disney, Mathias I

2018-04-06

Terrestrial laser scanning (TLS) opens up the possibility of describing the three-dimensional structures of trees in natural environments with unprecedented detail and accuracy. It is already being extensively applied to describe how ecosystem biomass and structure vary between sites, but can also facilitate major advances in developing and testing mechanistic theories of tree form and forest structure, thereby enabling us to understand why trees and forests have the biomass and three-dimensional structure they do. Here we focus on the ecological challenges and benefits of understanding tree form, and highlight some advances related to capturing and describing tree shape that are becoming possible with the advent of TLS. We present examples of ongoing work that applies, or could potentially apply, new TLS measurements to better understand the constraints on optimization of tree form. Theories of resource distribution networks, such as metabolic scaling theory, can be tested and further refined. TLS can also provide new approaches to the scaling of woody surface area and crown area, and thereby better quantify the metabolism of trees. Finally, we demonstrate how we can develop a more mechanistic understanding of the effects of avoidance of wind risk on tree form and maximum size. Over the next few years, TLS promises to deliver both major empirical and conceptual advances in the quantitative understanding of trees and tree-dominated ecosystems, leading to advances in understanding the ecology of why trees and ecosystems look and grow the way they do.

Conjugated Bilirubin Differentially Regulates CD4+ T Effector Cells and T Regulatory Cell Function through Outside-In and Inside-Out Mechanisms: The Effects of HAV Cell Surface Receptor and Intracellular Signaling

PubMed Central

Corral-Jara, Karla F.; Gómez-Leyva, Juan F.; Rosenstein, Yvonne; Jose-Abrego, Alexis; Roman, Sonia

2016-01-01

We recently reported an immune-modulatory role of conjugated bilirubin (CB) in hepatitis A virus (HAV) infection. During this infection the immune response relies on CD4+ T lymphocytes (TLs) and it may be affected by the interaction of HAV with its cellular receptor (HAVCR1/TIM-1) on T cell surface. How CB might affect T cell function during HAV infection remains to be elucidated. Herein, in vitro stimulation of CD4+ TLs from healthy donors with CB resulted in a decrease in the degree of intracellular tyrosine phosphorylation and an increase in the activity of T regulatory cells (Tregs) expressing HAVCR1/TIM-1. A comparison between CD4+ TLs from healthy donors and HAV-infected patients revealed changes in the TCR signaling pathway relative to changes in CB levels. The proportion of CD4+CD25+ TLs increased in patients with low CB serum levels and an increase in the percentage of Tregs expressing HAVCR1/TIM-1 was found in HAV-infected patients relative to controls. A low frequency of 157insMTTTVP insertion in the viral receptor gene HAVCR1/TIM-1 was found in patients and controls. Our data revealed that, during HAV infection, CB differentially regulates CD4+ TLs and Tregs functions by modulating intracellular pathways and by inducing changes in the proportion of Tregs expressing HAVCR1/TIM-1. PMID:27578921

Strata-based forest fuel classification for wild fire hazard assessment using terrestrial LiDAR

NASA Astrophysics Data System (ADS)

Chen, Yang; Zhu, Xuan; Yebra, Marta; Harris, Sarah; Tapper, Nigel

2016-10-01

Fuel structural characteristics affect fire behavior including fire intensity, spread rate, flame structure, and duration, therefore, quantifying forest fuel structure has significance in understanding fire behavior as well as providing information for fire management activities (e.g., planned burns, suppression, fuel hazard assessment, and fuel treatment). This paper presents a method of forest fuel strata classification with an integration between terrestrial light detection and ranging (LiDAR) data and geographic information system for automatically assessing forest fuel structural characteristics (e.g., fuel horizontal continuity and vertical arrangement). The accuracy of fuel description derived from terrestrial LiDAR scanning (TLS) data was assessed by field measured surface fuel depth and fuel percentage covers at distinct vertical layers. The comparison of TLS-derived depth and percentage cover at surface fuel layer with the field measurements produced root mean square error values of 1.1 cm and 5.4%, respectively. TLS-derived percentage cover explained 92% of the variation in percentage cover at all fuel layers of the entire dataset. The outcome indicated TLS-derived fuel characteristics are strongly consistent with field measured values. TLS can be used to efficiently and consistently classify forest vertical layers to provide more precise information for forest fuel hazard assessment and surface fuel load estimation in order to assist forest fuels management and fire-related operational activities. It can also be beneficial for mapping forest habitat, wildlife conservation, and ecosystem management.

The role of optoelectronic feedback on Franz-Keldysh voltage modulation of transistor lasers

NASA Astrophysics Data System (ADS)

Chang, Chi-Hsiang; Chang, Shu-Wei; Wu, Chao-Hsin

2016-03-01

Possessing both the high-speed characteristics of heterojunction bipolar transistors (HBTs) and enhanced radiative recombination of quantum wells (QWs), the light-emitting transistor (LET) which operates in the regime of spontaneous emissions has achieved up to 4.3 GHz modulation bandwidth. A 40 Gbit/s transmission rate can be even achieved using transistor laser (TL). The transistor laser provides not only the current modulation but also direct voltage-controlled modulation scheme of optical signals via Franz-Keldysh (FK) photon-assisted tunneling effect. In this work, the effect of FK absorption on the voltage modulation of TLs is investigated. In order to analyze the dynamics and optical responses of voltage modulation in TLs, the conventional rate equations relevant to diode lasers (DLs) are first modified to include the FK effect intuitively. The theoretical results of direct-current (DC) and small-signal alternating-current (AC) characteristics of optical responses are both investigated. While the DC characteristics look physical, the intrinsic optical response of TLs under the FK voltage modulation shows an AC enhancement with a 20 dB peak, which however is not observed in experiment. A complete model composed of the intrinsic optical transfer function and an electrical transfer function fed back by optical responses is proposed to explain the behaviors of voltage modulation in TLs. The abnormal AC peak disappears through this optoelectronic feedback. With the electrical response along with FK-included photon-carrier rate equations taken into account, the complete voltage-controlled optical modulation response of TLs is demonstrated.

Classification by Using Multispectral Point Cloud Data

NASA Astrophysics Data System (ADS)

Liao, C. T.; Huang, H. H.

2012-07-01

Remote sensing images are generally recorded in two-dimensional format containing multispectral information. Also, the semantic information is clearly visualized, which ground features can be better recognized and classified via supervised or unsupervised classification methods easily. Nevertheless, the shortcomings of multispectral images are highly depending on light conditions, and classification results lack of three-dimensional semantic information. On the other hand, LiDAR has become a main technology for acquiring high accuracy point cloud data. The advantages of LiDAR are high data acquisition rate, independent of light conditions and can directly produce three-dimensional coordinates. However, comparing with multispectral images, the disadvantage is multispectral information shortage, which remains a challenge in ground feature classification through massive point cloud data. Consequently, by combining the advantages of both LiDAR and multispectral images, point cloud data with three-dimensional coordinates and multispectral information can produce a integrate solution for point cloud classification. Therefore, this research acquires visible light and near infrared images, via close range photogrammetry, by matching images automatically through free online service for multispectral point cloud generation. Then, one can use three-dimensional affine coordinate transformation to compare the data increment. At last, the given threshold of height and color information is set as threshold in classification.

Line segment extraction for large scale unorganized point clouds

NASA Astrophysics Data System (ADS)

Lin, Yangbin; Wang, Cheng; Cheng, Jun; Chen, Bili; Jia, Fukai; Chen, Zhonggui; Li, Jonathan

2015-04-01

Line segment detection in images is already a well-investigated topic, although it has received considerably less attention in 3D point clouds. Benefiting from current LiDAR devices, large-scale point clouds are becoming increasingly common. Most human-made objects have flat surfaces. Line segments that occur where pairs of planes intersect give important information regarding the geometric content of point clouds, which is especially useful for automatic building reconstruction and segmentation. This paper proposes a novel method that is capable of accurately extracting plane intersection line segments from large-scale raw scan points. The 3D line-support region, namely, a point set near a straight linear structure, is extracted simultaneously. The 3D line-support region is fitted by our Line-Segment-Half-Planes (LSHP) structure, which provides a geometric constraint for a line segment, making the line segment more reliable and accurate. We demonstrate our method on the point clouds of large-scale, complex, real-world scenes acquired by LiDAR devices. We also demonstrate the application of 3D line-support regions and their LSHP structures on urban scene abstraction.

LIDAR data to support coastal erosion analysis: the Conero study case

NASA Astrophysics Data System (ADS)

Calligaro, Simone; Sofia, Giulia; Guarnieri, Alberto; Tarolli, Paolo

2013-04-01

In the last decades, the topic of coastal erosion and the derived risk have been subject of a growing interest for public authorities and researchers. Recent major natural events, such as hurricanes, tsunamis, and sea level rising, called the attention of media and society, underlining serious concerns about such problems. In a high-density populated country such as Italy, where tourism is one of the major economic activities, the coastal erosion is really a critical issue. In April 2010, along a reach of the coast of Ventotene Island, two young students tragically died, killed by a rock fall. This event dramatically stressed public authorities about the effectiveness of structural and non-structural measures for the mitigation of such phenomena. It is clear that an improving of the actual knowledge about coastal erosion is needed, especially to monitor such events and to set alert systems. In the last few years, airborne LIDAR technology led to a dramatic increase in terrain information. Airborne LiDAR and Terrestrial Laser Scanner (TLS) derived high-resolution Digital Terrain Models (DTMs) have opened avenues for hydrologic and geomorphologic studies (Tarolli et al., 2009). In general, all the main surface processes signatures are correctly recognized using a DTM with cell sizes of 1 m. Having said that, some sub-meter grid sizes may be more suitable in those situations where the analysis of micro topography related to micro changes due to slope failures is critical for risk assessment, and the Terrestrial Laser Scanner (TLS) has been proven to be a useful tool for such detailed field survey. The acquired elevation data with TLS allow to derive a centimeters high quality DTMs. The possibility to detect in detail the slope failures signatures results in a better understanding and mapping of the erosion susceptibility, and of those areas where slope failures are more likely to happen. In addition, these information can be also considered as the basis to develop risk maps. At this regard, a clear example is the case of coastal erosion. In this work a detailed TLS survey was carried out in summer 2012, in the Conero Regional Park (Marche, province of Ancona), along the "spiaggia Urbani" and "spiaggia San Michele". These two study areas present several sections affected by erosion, rock falls and slope failures. They are also a part of a very prestigious place for tourism during the summer season; therefore deriving risk maps is critical. Thanks to the TLS survey, it was possible to obtain a 10 cm resolution DTM covering a reach of about 1.5 km of the coast. This high resolution DTM was used to derive topographic attributes such as curvature from which it has been possible to automatically recognize (Tarolli et al, 2012) and map the surface features related to any surface instabilities. These topographic information and results will also serve as the reference point for future yearly TLS surveys, that absolutely will help in recognizing any micro changes and slope failures, improving the delineation of risk maps. References Tarolli, P., Arrowsmith, J.R., Vivoni, E.R. (2009). Understanding earth surface processes from remotely sensed digital terrain models, Geomorphology, 113, 1-3, doi:10.1016/j.geomorph. 2009.07.005. Tarolli, P., Sofia, G., Dalla Fontana, G. (2012). Geomorphic features extraction from high-resolution topography: landslide crowns and bank erosion, Natural Hazards, 61, 65-83, doi:10.1007/s11069-010-9695-2.

The translesion DNA polymerases Pol ζ and Rev1 are activated independently of PCNA ubiquitination upon UV radiation in mutants of DNA polymerase δ

PubMed Central

Ma, Emilie; Veaute, Xavier; Coïc, Eric

2017-01-01

Replicative DNA polymerases cannot insert efficiently nucleotides at sites of base lesions. This function is taken over by specialized translesion DNA synthesis (TLS) polymerases to allow DNA replication completion in the presence of DNA damage. In eukaryotes, Rad6- and Rad18-mediated PCNA ubiquitination at lysine 164 promotes recruitment of TLS polymerases, allowing cells to efficiently cope with DNA damage. However, several studies showed that TLS polymerases can be recruited also in the absence of PCNA ubiquitination. We hypothesized that the stability of the interactions between DNA polymerase δ (Pol δ) subunits and/or between Pol δ and PCNA at the primer/template junction is a crucial factor to determine the requirement of PCNA ubiquitination. To test this hypothesis, we used a structural mutant of Pol δ in which the interaction between Pol3 and Pol31 is inhibited. We found that in yeast, rad18Δ-associated UV hypersensitivity is suppressed by pol3-ct, a mutant allele of the POL3 gene that encodes the catalytic subunit of replicative Pol δ. pol3-ct suppressor effect was specifically dependent on the Rev1 and Pol ζ TLS polymerases. This result strongly suggests that TLS polymerases could rely much less on PCNA ubiquitination when Pol δ interaction with PCNA is partially compromised by mutations. In agreement with this model, we found that the pol3-FI allele suppressed rad18Δ-associated UV sensitivity as observed for pol3-ct. This POL3 allele carries mutations within a putative PCNA Interacting Peptide (PIP) motif. We then provided molecular and genetic evidence that this motif could contribute to Pol δ-PCNA interaction indirectly, although it is not a bona fide PIP. Overall, our results suggest that the primary role of PCNA ubiquitination is to allow TLS polymerases to outcompete Pol δ for PCNA access upon DNA damage. PMID:29281621

Biomechanical evaluation of different suture techniques for arthroscopic transtibial pull-out repair of posterior medial meniscus root tears.

PubMed

Feucht, Matthias J; Grande, Eduardo; Brunhuber, Johannes; Burgkart, Rainer; Imhoff, Andreas B; Braun, Sepp

2013-12-01

A tear of the posterior medial meniscus root (PMMR) is increasingly recognized as a serious knee joint injury. Several suture techniques for arthroscopic transtibial pull-out repair have been described; however, only limited data about the biomechanical properties of these techniques are currently available. There are significant differences between the tested suture techniques, with more complex suture configurations providing superior biomechanical properties. Controlled laboratory study. A total of 40 porcine medial menisci were randomly assigned to 1 of 4 groups (10 specimens each) according to suture technique: two simple stitches (TSS), horizontal mattress suture (HMS), modified Mason-Allen suture (MMA), and two modified loop stitches (TLS). Meniscus-suture constructs were subjected to cyclic loading followed by load-to-failure testing in a servohydraulic material testing machine. During cyclic loading, the HMS and TLS groups showed a significantly higher displacement after 100, 500, and 1000 cycles compared with the TSS and MMA groups. After 1000 cycles, the highest displacement was found for the TLS group, with significant differences compared with all other groups. During load-to-failure testing, the highest maximum load and yield load were observed for the MMA group, with statistically significant differences compared with the TSS and TLS groups. With regard to stiffness, the TSS and MMA groups showed significantly higher values compared with the HMS and TLS groups. The MMA technique provided the best biomechanical properties with regard to cyclic loading and load-to-failure testing. The TSS technique seems to be a valuable alternative. Both the HMS and TLS techniques have the disadvantage of lower stiffness and higher displacement during cyclic loading. Using a MMA technique may improve healing rates and avoid progressive extrusion of the medial meniscus after transtibial pull-out repair of PMMR tears. The TSS technique may be used as an alternative that is easier to perform, but a more careful rehabilitation program is possibly necessary to avoid early failure.

Behavior of Two-Level Tunneling Systems in Disordered and Amorphous Mechanically Alloyed Palladium, Silicon, Copper and in the Crystalline High T

NASA Astrophysics Data System (ADS)

McKenna, Mark Joseph

Amorphous materials have different low temperature, T <=q 10K, properties than their crystalline counterparts. The "Two level Tunneling System", (TLS), model has been very successful in explaining many of these differences, for example: a specific heat term linearly dependent on temperature, a sound velocity which increases as lnT at low temperatures, and an amplitude dependent ultrasonic attenuation. We have studied several systems in this context with emphasis on the determination of the density of states of the TLS through measurements of sound velocity changes for 0.27 K < T < 5K in the 5-30 MHz frequency range. In conjunction with x-ray diffraction and differential scanning calorimetry, (DSC), measurements, we used this TLS density of states to measure solid state amorphization in the mechanical alloying process, where elemental crystalline powders are alloyed and amorphized by repeated deformation, fragmenting and cold welding. We find the low temperature ultrasonic characteristics of amorphous Pd_ {0.775}Si_{0.165} Cu_{0.060}, produced by mechanical alloying in an inert atmosphere, are comparable with those for the amorphous alloys prepared by rapid solidification. If the milling takes place in air, rather than in argon, we find that following amorphization in the early stages of mechanical alloying, recrystallization occurs in the amorphous powders with extended milling. We have used these three methods: ultrasonic velocity changes, DSC measurements, x-ray measurements, to study the crystallization of mechanically alloyed PdSiCu and have compared the results with those for rapidly solidified PdSiCu. We find the ultrasonic properties of the amorphous alloys produced by grinding the recrystallized PdSiCu alloy are similar to those of both the mechanically alloyed and the rapidly solidified metallic glass. We have discussed our results with regard to the various models for the amorphization mechanism. Ultrasonic velocity measurements were used to study the interactions of TLS with phonons and with electrons in the high T_{rm c} superconductor, YBa_2Cu _3O_{7-delta} , and in a niobium compact, a conventional BCS superconductor, at temperatures below 1K, i.e. for T << T_{rm c}. The high T_{rm c} superconductors exhibit TLS relaxation typically found in normal metallic glasses, whereas the TLS in the niobium compact relax through interactions with phonons. We also have studied the dependence of the density of states of the TLS on the oxygen content. We find an interesting dependence of the density of states with transition temperature and with oxygen content: a decreasing density of states of the TLS with decreasing transition temperature. We interpret these results in light of recent electron diffraction measurements on the increasing ordering of oxygen vacancies with decreasing oxygen content, increasing delta..

Efficient terrestrial laser scan segmentation exploiting data structure

NASA Astrophysics Data System (ADS)

Mahmoudabadi, Hamid; Olsen, Michael J.; Todorovic, Sinisa

2016-09-01

New technologies such as lidar enable the rapid collection of massive datasets to model a 3D scene as a point cloud. However, while hardware technology continues to advance, processing 3D point clouds into informative models remains complex and time consuming. A common approach to increase processing efficiently is to segment the point cloud into smaller sections. This paper proposes a novel approach for point cloud segmentation using computer vision algorithms to analyze panoramic representations of individual laser scans. These panoramas can be quickly created using an inherent neighborhood structure that is established during the scanning process, which scans at fixed angular increments in a cylindrical or spherical coordinate system. In the proposed approach, a selected image segmentation algorithm is applied on several input layers exploiting this angular structure including laser intensity, range, normal vectors, and color information. These segments are then mapped back to the 3D point cloud so that modeling can be completed more efficiently. This approach does not depend on pre-defined mathematical models and consequently setting parameters for them. Unlike common geometrical point cloud segmentation methods, the proposed method employs the colorimetric and intensity data as another source of information. The proposed algorithm is demonstrated on several datasets encompassing variety of scenes and objects. Results show a very high perceptual (visual) level of segmentation and thereby the feasibility of the proposed algorithm. The proposed method is also more efficient compared to Random Sample Consensus (RANSAC), which is a common approach for point cloud segmentation.

Three-dimensional reconstruction of indoor whole elements based on mobile LiDAR point cloud data

NASA Astrophysics Data System (ADS)

Gong, Yuejian; Mao, Wenbo; Bi, Jiantao; Ji, Wei; He, Zhanjun

2014-11-01

Ground-based LiDAR is one of the most effective city modeling tools at present, which has been widely used for three-dimensional reconstruction of outdoor objects. However, as for indoor objects, there are some technical bottlenecks due to lack of GPS signal. In this paper, based on the high-precision indoor point cloud data which was obtained by LiDAR, an international advanced indoor mobile measuring equipment, high -precision model was fulfilled for all indoor ancillary facilities. The point cloud data we employed also contain color feature, which is extracted by fusion with CCD images. Thus, it has both space geometric feature and spectral information which can be used for constructing objects' surface and restoring color and texture of the geometric model. Based on Autodesk CAD platform and with help of PointSence plug, three-dimensional reconstruction of indoor whole elements was realized. Specifically, Pointools Edit Pro was adopted to edit the point cloud, then different types of indoor point cloud data was processed, including data format conversion, outline extracting and texture mapping of the point cloud model. Finally, three-dimensional visualization of the real-world indoor was completed. Experiment results showed that high-precision 3D point cloud data obtained by indoor mobile measuring equipment can be used for indoor whole elements' 3-d reconstruction and that methods proposed in this paper can efficiently realize the 3 -d construction of indoor whole elements. Moreover, the modeling precision could be controlled within 5 cm, which was proved to be a satisfactory result.

3D point cloud analysis of structured light registration in computer-assisted navigation in spinal surgeries

NASA Astrophysics Data System (ADS)

Gupta, Shaurya; Guha, Daipayan; Jakubovic, Raphael; Yang, Victor X. D.

2017-02-01

Computer-assisted navigation is used by surgeons in spine procedures to guide pedicle screws to improve placement accuracy and in some cases, to better visualize patient's underlying anatomy. Intraoperative registration is performed to establish a correlation between patient's anatomy and the pre/intra-operative image. Current algorithms rely on seeding points obtained directly from the exposed spinal surface to achieve clinically acceptable registration accuracy. Registration of these three dimensional surface point-clouds are prone to various systematic errors. The goal of this study was to evaluate the robustness of surgical navigation systems by looking at the relationship between the optical density of an acquired 3D point-cloud and the corresponding surgical navigation error. A retrospective review of a total of 48 registrations performed using an experimental structured light navigation system developed within our lab was conducted. For each registration, the number of points in the acquired point cloud was evaluated relative to whether the registration was acceptable, the corresponding system reported error and target registration error. It was demonstrated that the number of points in the point cloud neither correlates with the acceptance/rejection of a registration or the system reported error. However, a negative correlation was observed between the number of the points in the point-cloud and the corresponding sagittal angular error. Thus, system reported total registration points and accuracy are insufficient to gauge the accuracy of a navigation system and the operating surgeon must verify and validate registration based on anatomical landmarks prior to commencing surgery.

Study on Huizhou architecture of point cloud registration based on optimized ICP algorithm

NASA Astrophysics Data System (ADS)

Zhang, Runmei; Wu, Yulu; Zhang, Guangbin; Zhou, Wei; Tao, Yuqian

2018-03-01

In view of the current point cloud registration software has high hardware requirements, heavy workload and moltiple interactive definition, the source of software with better processing effect is not open, a two--step registration method based on normal vector distribution feature and coarse feature based iterative closest point (ICP) algorithm is proposed in this paper. This method combines fast point feature histogram (FPFH) algorithm, define the adjacency region of point cloud and the calculation model of the distribution of normal vectors, setting up the local coordinate system for each key point, and obtaining the transformation matrix to finish rough registration, the rough registration results of two stations are accurately registered by using the ICP algorithm. Experimental results show that, compared with the traditional ICP algorithm, the method used in this paper has obvious time and precision advantages for large amount of point clouds.

Automatic markerless registration of point clouds with semantic-keypoint-based 4-points congruent sets

NASA Astrophysics Data System (ADS)

Ge, Xuming

2017-08-01

The coarse registration of point clouds from urban building scenes has become a key topic in applications of terrestrial laser scanning technology. Sampling-based algorithms in the random sample consensus (RANSAC) model have emerged as mainstream solutions to address coarse registration problems. In this paper, we propose a novel combined solution to automatically align two markerless point clouds from building scenes. Firstly, the method segments non-ground points from ground points. Secondly, the proposed method detects feature points from each cross section and then obtains semantic keypoints by connecting feature points with specific rules. Finally, the detected semantic keypoints from two point clouds act as inputs to a modified 4PCS algorithm. Examples are presented and the results compared with those of K-4PCS to demonstrate the main contributions of the proposed method, which are the extension of the original 4PCS to handle heavy datasets and the use of semantic keypoints to improve K-4PCS in relation to registration accuracy and computational efficiency.

Object-Based Coregistration of Terrestrial Photogrammetric and ALS Point Clouds in Forested Areas

NASA Astrophysics Data System (ADS)

Polewski, P.; Erickson, A.; Yao, W.; Coops, N.; Krzystek, P.; Stilla, U.

2016-06-01

Airborne Laser Scanning (ALS) and terrestrial photogrammetry are methods applicable for mapping forested environments. While ground-based techniques provide valuable information about the forest understory, the measured point clouds are normally expressed in a local coordinate system, whose transformation into a georeferenced system requires additional effort. In contrast, ALS point clouds are usually georeferenced, yet the point density near the ground may be poor under dense overstory conditions. In this work, we propose to combine the strengths of the two data sources by co-registering the respective point clouds, thus enriching the georeferenced ALS point cloud with detailed understory information in a fully automatic manner. Due to markedly different sensor characteristics, coregistration methods which expect a high geometric similarity between keypoints are not suitable in this setting. Instead, our method focuses on the object (tree stem) level. We first calculate approximate stem positions in the terrestrial and ALS point clouds and construct, for each stem, a descriptor which quantifies the 2D and vertical distances to other stem centers (at ground height). Then, the similarities between all descriptor pairs from the two point clouds are calculated, and standard graph maximum matching techniques are employed to compute corresponding stem pairs (tiepoints). Finally, the tiepoint subset yielding the optimal rigid transformation between the terrestrial and ALS coordinate systems is determined. We test our method on simulated tree positions and a plot situated in the northern interior of the Coast Range in western Oregon, USA, using ALS data (76 x 121 m2) and a photogrammetric point cloud (33 x 35 m2) derived from terrestrial photographs taken with a handheld camera. Results on both simulated and real data show that the proposed stem descriptors are discriminative enough to derive good correspondences. Specifically, for the real plot data, 24 corresponding stems were coregistered with an average 2D position deviation of 66 cm.

Large-scale urban point cloud labeling and reconstruction

NASA Astrophysics Data System (ADS)

Zhang, Liqiang; Li, Zhuqiang; Li, Anjian; Liu, Fangyu

2018-04-01

The large number of object categories and many overlapping or closely neighboring objects in large-scale urban scenes pose great challenges in point cloud classification. In this paper, a novel framework is proposed for classification and reconstruction of airborne laser scanning point cloud data. To label point clouds, we present a rectified linear units neural network named ReLu-NN where the rectified linear units (ReLu) instead of the traditional sigmoid are taken as the activation function in order to speed up the convergence. Since the features of the point cloud are sparse, we reduce the number of neurons by the dropout to avoid over-fitting of the training process. The set of feature descriptors for each 3D point is encoded through self-taught learning, and forms a discriminative feature representation which is taken as the input of the ReLu-NN. The segmented building points are consolidated through an edge-aware point set resampling algorithm, and then they are reconstructed into 3D lightweight models using the 2.5D contouring method (Zhou and Neumann, 2010). Compared with deep learning approaches, the ReLu-NN introduced can easily classify unorganized point clouds without rasterizing the data, and it does not need a large number of training samples. Most of the parameters in the network are learned, and thus the intensive parameter tuning cost is significantly reduced. Experimental results on various datasets demonstrate that the proposed framework achieves better performance than other related algorithms in terms of classification accuracy and reconstruction quality.

Teacher Leaders Building Foundations for Data-Informed Teacher Learning in One Urban Elementary School

ERIC Educational Resources Information Center

Nicholson, Julie; Capitelli, Sarah; Richert, Anna E.; Wilson, Carrie; Bove, Claire

2017-01-01

We examine how teacher leaders (TLs), working in a low-income urban elementary school, supported their colleagues to learn how to collect quality formative data and to discuss it in collaborative conversations in order to make their students' learning visible. The TLs faced challenges reflecting consequences resulting from the district's high…

[Research and implementation of the TLS network transport security technology based on DICOM standard].

PubMed

Lu, Xiaoqi; Wang, Lei; Zhao, Jianfeng

2012-02-01

With the development of medical information, Picture Archiving and Communications System (PACS), Hospital Information System/Radiology Information System(HIS/RIS) and other medical information management system become popular and developed, and interoperability between these systems becomes more frequent. So, these enclosed systems will be open and regionalized by means of network, and this is inevitable. If the trend becomes true, the security of information transmission may be the first problem to be solved. Based on the need for network security, we investigated the Digital Imaging and Communications in Medicine (DICOM) Standard and Transport Layer Security (TLS) Protocol, and implemented the TLS transmission of the DICOM medical information with OpenSSL toolkit and DCMTK toolkit.

Optimal state transfer of a single dissipative two-level system

NASA Astrophysics Data System (ADS)

Jirari, Hamza; Wu, Ning

2016-04-01

Optimal state transfer of a single two-level system (TLS) coupled to an Ohmic boson bath via off-diagonal TLS-bath coupling is studied by using optimal control theory. In the weak system-bath coupling regime where the time-dependent Bloch-Redfield formalism is applicable, we obtain the Bloch equation to probe the evolution of the dissipative TLS in the presence of a time-dependent external control field. By using the automatic differentiation technique to compute the gradient for the cost functional, we calculate the optimal transfer integral profile that can achieve an ideal transfer within a dimer system in the Fenna-Matthews-Olson (FMO) model. The robustness of the control profile against temperature variation is also analyzed.

Superposition and alignment of labeled point clouds.

PubMed

Fober, Thomas; Glinca, Serghei; Klebe, Gerhard; Hüllermeier, Eyke

2011-01-01

Geometric objects are often represented approximately in terms of a finite set of points in three-dimensional euclidean space. In this paper, we extend this representation to what we call labeled point clouds. A labeled point cloud is a finite set of points, where each point is not only associated with a position in three-dimensional space, but also with a discrete class label that represents a specific property. This type of model is especially suitable for modeling biomolecules such as proteins and protein binding sites, where a label may represent an atom type or a physico-chemical property. Proceeding from this representation, we address the question of how to compare two labeled points clouds in terms of their similarity. Using fuzzy modeling techniques, we develop a suitable similarity measure as well as an efficient evolutionary algorithm to compute it. Moreover, we consider the problem of establishing an alignment of the structures in the sense of a one-to-one correspondence between their basic constituents. From a biological point of view, alignments of this kind are of great interest, since mutually corresponding molecular constituents offer important information about evolution and heredity, and can also serve as a means to explain a degree of similarity. In this paper, we therefore develop a method for computing pairwise or multiple alignments of labeled point clouds. To this end, we proceed from an optimal superposition of the corresponding point clouds and construct an alignment which is as much as possible in agreement with the neighborhood structure established by this superposition. We apply our methods to the structural analysis of protein binding sites.

Continuum Limit of Total Variation on Point Clouds

NASA Astrophysics Data System (ADS)

García Trillos, Nicolás; Slepčev, Dejan

2016-04-01

We consider point clouds obtained as random samples of a measure on a Euclidean domain. A graph representing the point cloud is obtained by assigning weights to edges based on the distance between the points they connect. Our goal is to develop mathematical tools needed to study the consistency, as the number of available data points increases, of graph-based machine learning algorithms for tasks such as clustering. In particular, we study when the cut capacity, and more generally total variation, on these graphs is a good approximation of the perimeter (total variation) in the continuum setting. We address this question in the setting of Γ-convergence. We obtain almost optimal conditions on the scaling, as the number of points increases, of the size of the neighborhood over which the points are connected by an edge for the Γ-convergence to hold. Taking of the limit is enabled by a transportation based metric which allows us to suitably compare functionals defined on different point clouds.

Point cloud registration from local feature correspondences-Evaluation on challenging datasets.

PubMed

Petricek, Tomas; Svoboda, Tomas

2017-01-01

Registration of laser scans, or point clouds in general, is a crucial step of localization and mapping with mobile robots or in object modeling pipelines. A coarse alignment of the point clouds is generally needed before applying local methods such as the Iterative Closest Point (ICP) algorithm. We propose a feature-based approach to point cloud registration and evaluate the proposed method and its individual components on challenging real-world datasets. For a moderate overlap between the laser scans, the method provides a superior registration accuracy compared to state-of-the-art methods including Generalized ICP, 3D Normal-Distribution Transform, Fast Point-Feature Histograms, and 4-Points Congruent Sets. Compared to the surface normals, the points as the underlying features yield higher performance in both keypoint detection and establishing local reference frames. Moreover, sign disambiguation of the basis vectors proves to be an important aspect in creating repeatable local reference frames. A novel method for sign disambiguation is proposed which yields highly repeatable reference frames.

On the performance of metrics to predict quality in point cloud representations

NASA Astrophysics Data System (ADS)

Alexiou, Evangelos; Ebrahimi, Touradj

2017-09-01

Point clouds are a promising alternative for immersive representation of visual contents. Recently, an increased interest has been observed in the acquisition, processing and rendering of this modality. Although subjective and objective evaluations are critical in order to assess the visual quality of media content, they still remain open problems for point cloud representation. In this paper we focus our efforts on subjective quality assessment of point cloud geometry, subject to typical types of impairments such as noise corruption and compression-like distortions. In particular, we propose a subjective methodology that is closer to real-life scenarios of point cloud visualization. The performance of the state-of-the-art objective metrics is assessed by considering the subjective scores as the ground truth. Moreover, we investigate the impact of adopting different test methodologies by comparing them. Advantages and drawbacks of every approach are reported, based on statistical analysis. The results and conclusions of this work provide useful insights that could be considered in future experimentation.

Semantic Segmentation of Building Elements Using Point Cloud Hashing

NASA Astrophysics Data System (ADS)

Chizhova, M.; Gurianov, A.; Hess, M.; Luhmann, T.; Brunn, A.; Stilla, U.

2018-05-01

For the interpretation of point clouds, the semantic definition of extracted segments from point clouds or images is a common problem. Usually, the semantic of geometrical pre-segmented point cloud elements are determined using probabilistic networks and scene databases. The proposed semantic segmentation method is based on the psychological human interpretation of geometric objects, especially on fundamental rules of primary comprehension. Starting from these rules the buildings could be quite well and simply classified by a human operator (e.g. architect) into different building types and structural elements (dome, nave, transept etc.), including particular building parts which are visually detected. The key part of the procedure is a novel method based on hashing where point cloud projections are transformed into binary pixel representations. A segmentation approach released on the example of classical Orthodox churches is suitable for other buildings and objects characterized through a particular typology in its construction (e.g. industrial objects in standardized enviroments with strict component design allowing clear semantic modelling).

Comparison of Uas-Based Photogrammetry Software for 3d Point Cloud Generation: a Survey Over a Historical Site

NASA Astrophysics Data System (ADS)

Alidoost, F.; Arefi, H.

2017-11-01

Nowadays, Unmanned Aerial System (UAS)-based photogrammetry offers an affordable, fast and effective approach to real-time acquisition of high resolution geospatial information and automatic 3D modelling of objects for numerous applications such as topography mapping, 3D city modelling, orthophoto generation, and cultural heritages preservation. In this paper, the capability of four different state-of-the-art software packages as 3DSurvey, Agisoft Photoscan, Pix4Dmapper Pro and SURE is examined to generate high density point cloud as well as a Digital Surface Model (DSM) over a historical site. The main steps of this study are including: image acquisition, point cloud generation, and accuracy assessment. The overlapping images are first captured using a quadcopter and next are processed by different software to generate point clouds and DSMs. In order to evaluate the accuracy and quality of point clouds and DSMs, both visual and geometric assessments are carry out and the comparison results are reported.

Multiview point clouds denoising based on interference elimination

NASA Astrophysics Data System (ADS)

Hu, Yang; Wu, Qian; Wang, Le; Jiang, Huanyu

2018-03-01

Newly emerging low-cost depth sensors offer huge potentials for three-dimensional (3-D) modeling, but existing high noise restricts these sensors from obtaining accurate results. Thus, we proposed a method for denoising registered multiview point clouds with high noise to solve that problem. The proposed method is aimed at fully using redundant information to eliminate the interferences among point clouds of different views based on an iterative procedure. In each iteration, noisy points are either deleted or moved to their weighted average targets in accordance with two cases. Simulated data and practical data captured by a Kinect v2 sensor were tested in experiments qualitatively and quantitatively. Results showed that the proposed method can effectively reduce noise and recover local features from highly noisy multiview point clouds with good robustness, compared to truncated signed distance function and moving least squares (MLS). Moreover, the resulting low-noise point clouds can be further smoothed by the MLS to achieve improved results. This study provides the feasibility of obtaining fine 3-D models with high-noise devices, especially for depth sensors, such as Kinect.

Feature-based three-dimensional registration for repetitive geometry in machine vision

PubMed Central

Gong, Yuanzheng; Seibel, Eric J.

2016-01-01

As an important step in three-dimensional (3D) machine vision, 3D registration is a process of aligning two or multiple 3D point clouds that are collected from different perspectives together into a complete one. The most popular approach to register point clouds is to minimize the difference between these point clouds iteratively by Iterative Closest Point (ICP) algorithm. However, ICP does not work well for repetitive geometries. To solve this problem, a feature-based 3D registration algorithm is proposed to align the point clouds that are generated by vision-based 3D reconstruction. By utilizing texture information of the object and the robustness of image features, 3D correspondences can be retrieved so that the 3D registration of two point clouds is to solve a rigid transformation. The comparison of our method and different ICP algorithms demonstrates that our proposed algorithm is more accurate, efficient and robust for repetitive geometry registration. Moreover, this method can also be used to solve high depth uncertainty problem caused by little camera baseline in vision-based 3D reconstruction. PMID:28286703

Indoor Modelling from Slam-Based Laser Scanner: Door Detection to Envelope Reconstruction

NASA Astrophysics Data System (ADS)

Díaz-Vilariño, L.; Verbree, E.; Zlatanova, S.; Diakité, A.

2017-09-01

Updated and detailed indoor models are being increasingly demanded for various applications such as emergency management or navigational assistance. The consolidation of new portable and mobile acquisition systems has led to a higher availability of 3D point cloud data from indoors. In this work, we explore the combined use of point clouds and trajectories from SLAM-based laser scanner to automate the reconstruction of building indoors. The methodology starts by door detection, since doors represent transitions from one indoor space to other, which constitutes an initial approach about the global configuration of the point cloud into building rooms. For this purpose, the trajectory is used to create a vertical point cloud profile in which doors are detected as local minimum of vertical distances. As point cloud and trajectory are related by time stamp, this feature is used to subdivide the point cloud into subspaces according to the location of the doors. The correspondence between subspaces and building rooms is not unambiguous. One subspace always corresponds to one room, but one room is not necessarily depicted by just one subspace, for example, in case of a room containing several doors and in which the acquisition is performed in a discontinue way. The labelling problem is formulated as combinatorial approach solved as a minimum energy optimization. Once the point cloud is subdivided into building rooms, envelop (conformed by walls, ceilings and floors) is reconstructed for each space. The connectivity between spaces is included by adding the previously detected doors to the reconstructed model. The methodology is tested in a real case study.

a Point Cloud Classification Approach Based on Vertical Structures of Ground Objects

NASA Astrophysics Data System (ADS)

Zhao, Y.; Hu, Q.; Hu, W.

2018-04-01

This paper proposes a novel method for point cloud classification using vertical structural characteristics of ground objects. Since urbanization develops rapidly nowadays, urban ground objects also change frequently. Conventional photogrammetric methods cannot satisfy the requirements of updating the ground objects' information efficiently, so LiDAR (Light Detection and Ranging) technology is employed to accomplish this task. LiDAR data, namely point cloud data, can obtain detailed three-dimensional coordinates of ground objects, but this kind of data is discrete and unorganized. To accomplish ground objects classification with point cloud, we first construct horizontal grids and vertical layers to organize point cloud data, and then calculate vertical characteristics, including density and measures of dispersion, and form characteristic curves for each grids. With the help of PCA processing and K-means algorithm, we analyze the similarities and differences of characteristic curves. Curves that have similar features will be classified into the same class and point cloud correspond to these curves will be classified as well. The whole process is simple but effective, and this approach does not need assistance of other data sources. In this study, point cloud data are classified into three classes, which are vegetation, buildings, and roads. When horizontal grid spacing and vertical layer spacing are 3 m and 1 m respectively, vertical characteristic is set as density, and the number of dimensions after PCA processing is 11, the overall precision of classification result is about 86.31 %. The result can help us quickly understand the distribution of various ground objects.

Integrated Change Detection and Classification in Urban Areas Based on Airborne Laser Scanning Point Clouds.

PubMed

Tran, Thi Huong Giang; Ressl, Camillo; Pfeifer, Norbert

2018-02-03

This paper suggests a new approach for change detection (CD) in 3D point clouds. It combines classification and CD in one step using machine learning. The point cloud data of both epochs are merged for computing features of four types: features describing the point distribution, a feature relating to relative terrain elevation, features specific for the multi-target capability of laser scanning, and features combining the point clouds of both epochs to identify the change. All these features are merged in the points and then training samples are acquired to create the model for supervised classification, which is then applied to the whole study area. The final results reach an overall accuracy of over 90% for both epochs of eight classes: lost tree, new tree, lost building, new building, changed ground, unchanged building, unchanged tree, and unchanged ground.

A curvature-based weighted fuzzy c-means algorithm for point clouds de-noising

NASA Astrophysics Data System (ADS)

Cui, Xin; Li, Shipeng; Yan, Xiutian; He, Xinhua

2018-04-01

In order to remove the noise of three-dimensional scattered point cloud and smooth the data without damnify the sharp geometric feature simultaneity, a novel algorithm is proposed in this paper. The feature-preserving weight is added to fuzzy c-means algorithm which invented a curvature weighted fuzzy c-means clustering algorithm. Firstly, the large-scale outliers are removed by the statistics of r radius neighboring points. Then, the algorithm estimates the curvature of the point cloud data by using conicoid parabolic fitting method and calculates the curvature feature value. Finally, the proposed clustering algorithm is adapted to calculate the weighted cluster centers. The cluster centers are regarded as the new points. The experimental results show that this approach is efficient to different scale and intensities of noise in point cloud with a high precision, and perform a feature-preserving nature at the same time. Also it is robust enough to different noise model.

Dissipation of turbulence in the wake of a wind turbine

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lundquist, J. K.; Bariteau, L.

The wake of a wind turbine is characterized by increased turbulence and decreased wind speed. Turbines are generally deployed in large groups in wind farms, and so the behaviour of an individual wake as it merges with other wakes and propagates downwind is critical in assessing wind-farm power production. This evolution depends on the rate of turbulence dissipation in the wind-turbine wake, which has not been previously quantified in field-scale measurements. In situ measurements of winds and turbulence dissipation from the wake region of a multi-MW turbine were collected using a tethered lifting system (TLS) carrying a payload of high-ratemore » turbulence probes. Ambient flow measurements were provided from sonic anemometers on a meteorological tower located near the turbine. Good agreement between the tower measurements and the TLS measurements was established for a case without a wind-turbine wake. When an operating wind turbine is located between the tower and the TLS so that the wake propagates to the TLS, the TLS measures dissipation rates one to two orders of magnitude higher in the wake than outside of the wake. These data, collected between two and three rotor diameters D downwind of the turbine, document the significant enhancement of turbulent kinetic energy dissipation rate within the wind-turbine wake. These wake measurements suggest that it may be useful to pursue modelling approaches that account for enhanced dissipation. Furthermore. comparisons of wake and non-wake dissipation rates to mean wind speed, wind-speed variance, and turbulence intensity are presented to facilitate the inclusion of these measurements in wake modelling schemes.« less

Dissipation of Turbulence in the Wake of a Wind Turbine

NASA Astrophysics Data System (ADS)

Lundquist, J. K.; Bariteau, L.

2015-02-01

The wake of a wind turbine is characterized by increased turbulence and decreased wind speed. Turbines are generally deployed in large groups in wind farms, and so the behaviour of an individual wake as it merges with other wakes and propagates downwind is critical in assessing wind-farm power production. This evolution depends on the rate of turbulence dissipation in the wind-turbine wake, which has not been previously quantified in field-scale measurements. In situ measurements of winds and turbulence dissipation from the wake region of a multi-MW turbine were collected using a tethered lifting system (TLS) carrying a payload of high-rate turbulence probes. Ambient flow measurements were provided from sonic anemometers on a meteorological tower located near the turbine. Good agreement between the tower measurements and the TLS measurements was established for a case without a wind-turbine wake. When an operating wind turbine is located between the tower and the TLS so that the wake propagates to the TLS, the TLS measures dissipation rates one to two orders of magnitude higher in the wake than outside of the wake. These data, collected between two and three rotor diameters downwind of the turbine, document the significant enhancement of turbulent kinetic energy dissipation rate within the wind-turbine wake. These wake measurements suggest that it may be useful to pursue modelling approaches that account for enhanced dissipation. Comparisons of wake and non-wake dissipation rates to mean wind speed, wind-speed variance, and turbulence intensity are presented to facilitate the inclusion of these measurements in wake modelling schemes.

Dissipation of turbulence in the wake of a wind turbine

DOE PAGES

Lundquist, J. K.; Bariteau, L.

2014-11-06

The wake of a wind turbine is characterized by increased turbulence and decreased wind speed. Turbines are generally deployed in large groups in wind farms, and so the behaviour of an individual wake as it merges with other wakes and propagates downwind is critical in assessing wind-farm power production. This evolution depends on the rate of turbulence dissipation in the wind-turbine wake, which has not been previously quantified in field-scale measurements. In situ measurements of winds and turbulence dissipation from the wake region of a multi-MW turbine were collected using a tethered lifting system (TLS) carrying a payload of high-ratemore » turbulence probes. Ambient flow measurements were provided from sonic anemometers on a meteorological tower located near the turbine. Good agreement between the tower measurements and the TLS measurements was established for a case without a wind-turbine wake. When an operating wind turbine is located between the tower and the TLS so that the wake propagates to the TLS, the TLS measures dissipation rates one to two orders of magnitude higher in the wake than outside of the wake. These data, collected between two and three rotor diameters D downwind of the turbine, document the significant enhancement of turbulent kinetic energy dissipation rate within the wind-turbine wake. These wake measurements suggest that it may be useful to pursue modelling approaches that account for enhanced dissipation. Furthermore. comparisons of wake and non-wake dissipation rates to mean wind speed, wind-speed variance, and turbulence intensity are presented to facilitate the inclusion of these measurements in wake modelling schemes.« less

A warming tropical central Pacific dries the lower stratosphere

NASA Astrophysics Data System (ADS)

Ding, Qinghua; Fu, Qiang

2018-04-01

The amount of water vapor in the tropical lower stratosphere (TLS), which has an important influence on the radiative energy budget of the climate system, is modulated by the temperature variability of the tropical tropopause layer (TTL). The TTL temperature variability is caused by a complex combination of the stratospheric quasi-biennial oscillation (QBO), tropospheric convective processes in the tropics, and the Brewer-Dobson circulation (BDC) driven by mid-latitude and subtropical atmospheric waves. In 2000, the TLS water vapor amount exhibited a stepwise transition to a dry phase, apparently caused by a change in the BDC. In this study, we present observational and modeling evidence that the epochal change of water vapor between the periods of 1992-2000 and 2001-2005 was also partly caused by a concurrent sea surface temperature (SST) warming in the tropical central Pacific. This SST warming cools the TTL above by enhancing the equatorial wave-induced upward motion near the tropopause, which consequently reduces the amount of water vapor entering the stratosphere. The QBO affects the TLS water vapor primarily on inter-annual timescales, whereas a classical El Niño southern oscillation (ENSO) event has small effect on tropical mean TLS water vapor because its responses are longitudinally out of phase. This study suggests that the tropical central Pacific SST is another driver of TLS water vapor variability on inter-decadal timescales and the tropical SST changes could contribute to about 30% of the step-wise drop of the lower stratospheric water vapor from 1992-2000 to 2001-2005.

Evaluation of Methods for Coregistration and Fusion of Rpas-Based 3d Point Clouds and Thermal Infrared Images

NASA Astrophysics Data System (ADS)

Hoegner, L.; Tuttas, S.; Xu, Y.; Eder, K.; Stilla, U.

2016-06-01

This paper discusses the automatic coregistration and fusion of 3d point clouds generated from aerial image sequences and corresponding thermal infrared (TIR) images. Both RGB and TIR images have been taken from a RPAS platform with a predefined flight path where every RGB image has a corresponding TIR image taken from the same position and with the same orientation with respect to the accuracy of the RPAS system and the inertial measurement unit. To remove remaining differences in the exterior orientation, different strategies for coregistering RGB and TIR images are discussed: (i) coregistration based on 2D line segments for every single TIR image and the corresponding RGB image. This method implies a mainly planar scene to avoid mismatches; (ii) coregistration of both the dense 3D point clouds from RGB images and from TIR images by coregistering 2D image projections of both point clouds; (iii) coregistration based on 2D line segments in every single TIR image and 3D line segments extracted from intersections of planes fitted in the segmented dense 3D point cloud; (iv) coregistration of both the dense 3D point clouds from RGB images and from TIR images using both ICP and an adapted version based on corresponding segmented planes; (v) coregistration of both image sets based on point features. The quality is measured by comparing the differences of the back projection of homologous points in both corrected RGB and TIR images.

Statistical evaluation of the influence of the uncertainty budget on B-spline curve approximation

NASA Astrophysics Data System (ADS)

Zhao, Xin; Alkhatib, Hamza; Kargoll, Boris; Neumann, Ingo

2017-12-01

In the field of engineering geodesy, terrestrial laser scanning (TLS) has become a popular method for detecting deformations. This paper analyzes the influence of the uncertainty budget on free-form curves modeled by B-splines. Usually, free-form estimation is based on scanning points assumed to have equal accuracies, which is not realistic. Previous findings demonstrate that the residuals still contain random and systematic uncertainties caused by instrumental, object-related and atmospheric influences. In order to guarantee the quality of derived estimates, it is essential to be aware of all uncertainties and their impact on the estimation. In this paper, a more detailed uncertainty budget is considered, in the context of the "Guide to the Expression of Uncertainty in Measurement" (GUM), which leads to a refined, heteroskedastic variance covariance matrix (VCM) of TLS measurements. Furthermore, the control points of B-spline curves approximating a measured bridge are estimated. Comparisons are made between the estimated B-spline curves using on the one hand a homoskedastic VCM and on the other hand the refined VCM. To assess the statistical significance of the differences displayed by the estimates for the two stochastic models, a nested model misspecification test and a non-nested model selection test are described and applied. The test decisions indicate that the homoskedastic VCM should be replaced by a heteroskedastic VCM in the direction of the suggested VCM. However, the tests also indicate that the considered VCM is still inadequate in light of the given data set and should therefore be improved.

Geospatial Field Methods: An Undergraduate Course Built Around Point Cloud Construction and Analysis to Promote Spatial Learning and Use of Emerging Technology in Geoscience

NASA Astrophysics Data System (ADS)

Bunds, M. P.

2017-12-01

Point clouds are a powerful data source in the geosciences, and the emergence of structure-from-motion (SfM) photogrammetric techniques has allowed them to be generated quickly and inexpensively. Consequently, applications of them as well as methods to generate, manipulate, and analyze them warrant inclusion in undergraduate curriculum. In a new course called Geospatial Field Methods at Utah Valley University, students in small groups use SfM to generate a point cloud from imagery collected with a small unmanned aerial system (sUAS) and use it as a primary data source for a research project. Before creating their point clouds, students develop needed technical skills in laboratory and class activities. The students then apply the skills to construct the point clouds, and the research projects and point cloud construction serve as a central theme for the class. Intended student outcomes for the class include: technical skills related to acquiring, processing, and analyzing geospatial data; improved ability to carry out a research project; and increased knowledge related to their specific project. To construct the point clouds, students first plan their field work by outlining the field site, identifying locations for ground control points (GCPs), and loading them onto a handheld GPS for use in the field. They also estimate sUAS flight elevation, speed, and the flight path grid spacing required to produce a point cloud with the resolution required for their project goals. In the field, the students place the GCPs using handheld GPS, and survey the GCP locations using post-processed-kinematic (PPK) or real-time-kinematic (RTK) methods. The students pilot the sUAS and operate its camera according to the parameters that they estimated in planning their field work. Data processing includes obtaining accurate locations for the PPK/RTK base station and GCPs, and SfM processing with Agisoft Photoscan. The resulting point clouds are rasterized into digital surface models, assessed for accuracy, and analyzed in Geographic Information System software. Student projects have included mapping and analyzing landslide morphology, fault scarps, and earthquake ground surface rupture. Students have praised the geospatial skills they learn, whereas helping them stay on schedule to finish their projects is a challenge.

A Novel Field-Based Approach for Analysing Bar Reworking: Trialled in the Tongariro River, New Zealand

NASA Astrophysics Data System (ADS)

Reid, H. E.; Williams, R. D.; Coleman, S.; Brierley, G. J.

2012-04-01

Bars are key morphological units within river systems, fashioning the sediment regime and bedload transport processes within a reach. Reworking of these features underpins channel adjustment at larger scales, thereby acting as a key determinant of channel stability. Yet, despite their fundamental importance to channel evolution, few investigations have acquired spatially continuous data on bar morphology and sediment particle size to facilitate detailed investigations on bar reworking. To this end, four bars along a 10 km reach of wandering gravel bed river were surveyed, capturing downstream changes in slope, bed material size and channel planform. High resolution surveys of bar topography and grain-size roughness were acquired using Terrestrial Laser Scanning (TLS). The resulting point clouds were then filtered to a quasi-uniform point spacing of 0.05 m and statistical attributes were extracted at a 1 m resolution. The detrended standard deviations from the TLS data were then correlated to the underlying median grain size (D50), which was measured using the Wolman transect method. The resulting linear regression model had a strong relationship (R2 = 0.92) and was used to map median sediment size across each bar. Representative cross-sections were used to interpolate water surfaces across each bar, for flood events with recurrence intervals (RI) of 2.33, 10, 20, 50 and 100 years, enabling flow depth to be calculated. The ratio of dimensionless shear stress (from the depth raster and slope) over critical shear stress (from the D50 raster) was used to map entrainment across each bar at 1 m resolution for each flood event. This is referred to as 'relative erodibility'. The two downstream bars, which are characterised by low slope and smaller bed material, underwent greater entrainment during the more frequent 2.33 RI flood than the higher energy upstream bars which required floods with a RI of 10 or greater. Reworking was also assessed for within-bar geomorphic units. This work demonstrated that floods with a 2.33 year RI flush material on the bar tail, while 10 year RI floods rework the supra-platform and back channel deposits and only the largest flows (RI of > = 50) are able to entrain the bar head materials. Interestingly, despite dramatic differences between slope, grain-size and planform, all bar heads were found to undergo minimal entrainment (between 10 - 20 %) during the frequent 2.33 RI flood. This indicates that resistance at the bar head during frequent floods promotes the deposition of finer-grained, more transient units in their lee. This process-based appraisal explains channel adjustment at the reach-scale, whereby the proportion of the bar made out of more frequently entrained units (tail, backchannel, supra-platform) relative to more static units at the bar head exerts a direct influence upon the extent of adjustment of the bar and the reach as a whole.

3_D modeling using TLS and GPR techniques to characterize above and below-ground wood distribution in pyroclastic deposits along the Blanco River (Chilean Patagonia)

NASA Astrophysics Data System (ADS)

Valdebenito, Galo; Tonon, Alessia; Iroume, Andrés; Alvarado, David; Fuentes, Carlos; Picco, Lorenzo; Lenzi, Mario

2016-04-01

To date, the study of in-stream wood in rivers has been focused mainly on quantifying wood pieces deposited above the ground. However, in some particular river systems, the presence of buried dead wood can also represent an important component of wood recruitment and budgeting dynamics. This is the case of the Blanco River (Southern Chile) severely affected by the eruption of Chaitén Volcano occurred between 2008 and 2009. The high pyroclastic sediment deposition and transport affected the channel and the adjacent forest, burying wood logs and standing trees. The aim of this contribution is to assess the presence and distribution of wood in two study areas (483 m2 and 1989 m2, respectively) located along the lower streambank of the Blanco River, and covered by thick pyroclastic deposition up to 5 m. The study areas were surveyed using two different devices, a Terrestrial Laser Scanner (TLS) and a Ground Penetrating Radar (GPR). The first was used to scan the above surface achieving a high point cloud density (≈ 2000 points m-2) which allowed us to identify and measure the wood volume. The second, was used to characterize the internal morphology of the volcanic deposits and to detect the presence and spatial distribution of buried wood up to a depth of 4 m. Preliminary results have demonstrated differences in the numerousness and volume of above wood between the two study areas. In the first one, there were 43 wood elements, 33 standing trees and 10 logs, with a total volume of 2.96 m3 (109.47 m3 km-1), whereas the second one was characterized by the presence of just 7 standing trees and 11 wood pieces, for a total amount of 0.77 m3 (7.73 m3 km-1). The dimensions of the wood elements vary greatly according to the typology, standing trees show the higher median values in diameter and length (0.15 m and 2.91 m, respectively), whereas the wood logs were smaller (0.06 m and 1.12 m, respectively). The low dimensions of deposited wood can be probably connected to their origin, suggesting that these elements were generated by toppling and breaking of surrounding dead trees. Results obtained with the GPR confirm the ability of this instrument to localize the presence and distribution of buried wood. From the 3-D analysis it was possible to assess the spatial distribution and to estimate, as first approach, the volume of the buried wood which represents approximately 0.04% of the entire volcanic deposit. Further analysis will focus on additional GPR calibration with different wood sizes for a more accurate estimation of the volume. The knowledge of the overall wood amount stored in a fluvial system that can be remobilized over time, represent an essential factor to ensure better forest and river management actions.

Using History and Philosophy of Science to Promote Students' Argumentation

ERIC Educational Resources Information Center

Archila, Pablo Antonio

2015-01-01

This article describes the effect of a teaching-learning sequence (TLS) based on the discovery of oxygen in promoting students' argumentation. It examines the written and oral arguments produced by 63 high school students (24 females and 39 males, 16-17 years old) in France during a complete TLS supervised by the same teacher. The data used in…

76 FR 8620 - Airworthiness Directives; Pratt & Whitney JT8D-209, -217, -217A, -217C, and -219 Turbofan Engines

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-15

... inspection AD 97-17-04R1, and to allow automatic eddy current inspection per engine manual Section 72-33-31.... That AD currently requires revisions to the engine manufacturer's time limits section (TLS) to include... modifies the TLS of the manufacturer's engine manual and an air carrier's approved continuous airworthiness...

DNA lesion identity drives choice of damage tolerance pathway in murine cell chromosomes.

PubMed

Cohen, Isadora S; Bar, Carmit; Paz-Elizur, Tamar; Ainbinder, Elena; Leopold, Karoline; de Wind, Niels; Geacintov, Nicholas; Livneh, Zvi

2015-02-18

DNA-damage tolerance (DDT) via translesion DNA synthesis (TLS) or homology-dependent repair (HDR) functions to bypass DNA lesions encountered during replication, and is critical for maintaining genome stability. Here, we present piggyBlock, a new chromosomal assay that, using piggyBac transposition of DNA containing a known lesion, measures the division of labor between the two DDT pathways. We show that in the absence of DNA damage response, tolerance of the most common sunlight-induced DNA lesion, TT-CPD, is achieved by TLS in mouse embryo fibroblasts. Meanwhile, BP-G, a major smoke-induced DNA lesion, is bypassed primarily by HDR, providing the first evidence for this mechanism being the main tolerance pathway for a biologically important lesion in a mammalian genome. We also show that, far from being a last-resort strategy as it is sometimes portrayed, TLS operates alongside nucleotide excision repair, handling 40% of TT-CPDs in repair-proficient cells. Finally, DDT acts in mouse embryonic stem cells, exhibiting the same pattern—mutagenic TLS included—despite the risk of propagating mutations along all cell lineages. The new method highlights the importance of HDR, and provides an effective tool for studying DDT in mammalian cells.

DNA lesion identity drives choice of damage tolerance pathway in murine cell chromosomes

PubMed Central

Cohen, Isadora S.; Bar, Carmit; Paz-Elizur, Tamar; Ainbinder, Elena; Leopold, Karoline; de Wind, Niels; Geacintov, Nicholas; Livneh, Zvi

2015-01-01

DNA-damage tolerance (DDT) via translesion DNA synthesis (TLS) or homology-dependent repair (HDR) functions to bypass DNA lesions encountered during replication, and is critical for maintaining genome stability. Here, we present piggyBlock, a new chromosomal assay that, using piggyBac transposition of DNA containing a known lesion, measures the division of labor between the two DDT pathways. We show that in the absence of DNA damage response, tolerance of the most common sunlight-induced DNA lesion, TT-CPD, is achieved by TLS in mouse embryo fibroblasts. Meanwhile, BP-G, a major smoke-induced DNA lesion, is bypassed primarily by HDR, providing the first evidence for this mechanism being the main tolerance pathway for a biologically important lesion in a mammalian genome. We also show that, far from being a last-resort strategy as it is sometimes portrayed, TLS operates alongside nucleotide excision repair, handling 40% of TT-CPDs in repair-proficient cells. Finally, DDT acts in mouse embryonic stem cells, exhibiting the same pattern—mutagenic TLS included—despite the risk of propagating mutations along all cell lineages. The new method highlights the importance of HDR, and provides an effective tool for studying DDT in mammalian cells. PMID:25589543

Archaeal replicative primases can perform translesion DNA synthesis.

PubMed

Jozwiakowski, Stanislaw K; Borazjani Gholami, Farimah; Doherty, Aidan J

2015-02-17

DNA replicases routinely stall at lesions encountered on the template strand, and translesion DNA synthesis (TLS) is used to rescue progression of stalled replisomes. This process requires specialized polymerases that perform translesion DNA synthesis. Although prokaryotes and eukaryotes possess canonical TLS polymerases (Y-family Pols) capable of traversing blocking DNA lesions, most archaea lack these enzymes. Here, we report that archaeal replicative primases (Pri S, primase small subunit) can also perform TLS. Archaeal Pri S can bypass common oxidative DNA lesions, such as 8-Oxo-2'-deoxyguanosines and UV light-induced DNA damage, faithfully bypassing cyclobutane pyrimidine dimers. Although it is well documented that archaeal replicases specifically arrest at deoxyuracils (dUs) due to recognition and binding to the lesions, a replication restart mechanism has not been identified. Here, we report that Pri S efficiently replicates past dUs, even in the presence of stalled replicase complexes, thus providing a mechanism for maintaining replication bypass of these DNA lesions. Together, these findings establish that some replicative primases, previously considered to be solely involved in priming replication, are also TLS proficient and therefore may play important roles in damage tolerance at replication forks.

Uncertainty in multispectral lidar signals caused by incidence angle effects

PubMed Central

Nevalainen, Olli; Hakala, Teemu; Kaasalainen, Mikko

2018-01-01

Multispectral terrestrial laser scanning (TLS) is an emerging technology. Several manufacturers already offer commercial dual or three wavelength airborne laser scanners, while multispectral TLS is still carried out mainly with research instruments. Many of these research efforts have focused on the study of vegetation. The aim of this paper is to study the uncertainty of the measurement of spectral indices of vegetation with multispectral lidar. Using two spectral indices as examples, we find that the uncertainty is due to systematic errors caused by the wavelength dependency of laser incidence angle effects. This finding is empirical, and the error cannot be removed by modelling or instrument modification. The discovery and study of these effects has been enabled by hyperspectral and multispectral TLS, and it has become a subject of active research within the past few years. We summarize the most recent studies on multi-wavelength incidence angle effects and present new results on the effect of specular reflection from the leaf surface, and the surface structure, which have been suggested to play a key role. We also discuss the consequences to the measurement of spectral indices with multispectral TLS, and a possible correction scheme using a synthetic laser footprint. PMID:29503718

PCNA mono-ubiquitination and activation of translesion DNA polymerases by DNA polymerase {alpha}.

PubMed

Suzuki, Motoshi; Niimi, Atsuko; Limsirichaikul, Siripan; Tomida, Shuta; Miao Huang, Qin; Izuta, Shunji; Usukura, Jiro; Itoh, Yasutomo; Hishida, Takashi; Akashi, Tomohiro; Nakagawa, Yoshiyuki; Kikuchi, Akihiko; Pavlov, Youri; Murate, Takashi; Takahashi, Takashi

2009-07-01

Translesion DNA synthesis (TLS) involves PCNA mono-ubiquitination and TLS DNA polymerases (pols). Recent evidence has shown that the mono-ubiquitination is induced not only by DNA damage but also by other factors that induce stalling of the DNA replication fork. We studied the effect of spontaneous DNA replication errors on PCNA mono-ubiquitination and TLS induction. In the pol1L868F strain, which expressed an error-prone pol alpha, PCNA was spontaneously mono-ubiquitinated. Pol alpha L868F had a rate-limiting step at the extension from mismatched primer termini. Electron microscopic observation showed the accumulation of a single-stranded region at the DNA replication fork in yeast cells. For pol alpha errors, pol zeta participated in a generation of +1 frameshifts. Furthermore, in the pol1L868F strain, UV-induced mutations were lower than in the wild-type and a pol delta mutant strain (pol3-5DV), and deletion of the RAD30 gene (pol eta) suppressed this defect. These data suggest that nucleotide misincorporation by pol alpha induces exposure of single-stranded DNA, PCNA mono-ubiquitination and activates TLS pols.

Mapping Urban Tree Canopy Cover Using Fused Airborne LIDAR and Satellite Imagery Data

NASA Astrophysics Data System (ADS)

Parmehr, Ebadat G.; Amati, Marco; Fraser, Clive S.

2016-06-01

Urban green spaces, particularly urban trees, play a key role in enhancing the liveability of cities. The availability of accurate and up-to-date maps of tree canopy cover is important for sustainable development of urban green spaces. LiDAR point clouds are widely used for the mapping of buildings and trees, and several LiDAR point cloud classification techniques have been proposed for automatic mapping. However, the effectiveness of point cloud classification techniques for automated tree extraction from LiDAR data can be impacted to the point of failure by the complexity of tree canopy shapes in urban areas. Multispectral imagery, which provides complementary information to LiDAR data, can improve point cloud classification quality. This paper proposes a reliable method for the extraction of tree canopy cover from fused LiDAR point cloud and multispectral satellite imagery data. The proposed method initially associates each LiDAR point with spectral information from the co-registered satellite imagery data. It calculates the normalised difference vegetation index (NDVI) value for each LiDAR point and corrects tree points which have been misclassified as buildings. Then, region growing of tree points, taking the NDVI value into account, is applied. Finally, the LiDAR points classified as tree points are utilised to generate a canopy cover map. The performance of the proposed tree canopy cover mapping method is experimentally evaluated on a data set of airborne LiDAR and WorldView 2 imagery covering a suburb in Melbourne, Australia.

Registration of Vehicle-Borne Point Clouds and Panoramic Images Based on Sensor Constellations.

PubMed

Yao, Lianbi; Wu, Hangbin; Li, Yayun; Meng, Bin; Qian, Jinfei; Liu, Chun; Fan, Hongchao

2017-04-11

A mobile mapping system (MMS) is usually utilized to collect environmental data on and around urban roads. Laser scanners and panoramic cameras are the main sensors of an MMS. This paper presents a new method for the registration of the point clouds and panoramic images based on sensor constellation. After the sensor constellation was analyzed, a feature point, the intersection of the connecting line between the global positioning system (GPS) antenna and the panoramic camera with a horizontal plane, was utilized to separate the point clouds into blocks. The blocks for the central and sideward laser scanners were extracted with the segmentation feature points. Then, the point clouds located in the blocks were separated from the original point clouds. Each point in the blocks was used to find the accurate corresponding pixel in the relative panoramic images via a collinear function, and the position and orientation relationship amongst different sensors. A search strategy is proposed for the correspondence of laser scanners and lenses of panoramic cameras to reduce calculation complexity and improve efficiency. Four cases of different urban road types were selected to verify the efficiency and accuracy of the proposed method. Results indicate that most of the point clouds (with an average of 99.7%) were successfully registered with the panoramic images with great efficiency. Geometric evaluation results indicate that horizontal accuracy was approximately 0.10-0.20 m, and vertical accuracy was approximately 0.01-0.02 m for all cases. Finally, the main factors that affect registration accuracy, including time synchronization amongst different sensors, system positioning and vehicle speed, are discussed.

Advanced Visualization and Interactive Display Rapid Innovation and Discovery Evaluation Research (VISRIDER) Program Task 6: Point Cloud Visualization Techniques for Desktop and Web Platforms

DTIC Science & Technology

2017-04-01

ADVANCED VISUALIZATION AND INTERACTIVE DISPLAY RAPID INNOVATION AND DISCOVERY EVALUATION RESEARCH (VISRIDER) PROGRAM TASK 6: POINT CLOUD...To) OCT 2013 – SEP 2014 4. TITLE AND SUBTITLE ADVANCED VISUALIZATION AND INTERACTIVE DISPLAY RAPID INNOVATION AND DISCOVERY EVALUATION RESEARCH...various point cloud visualization techniques for viewing large scale LiDAR datasets. Evaluate their potential use for thick client desktop platforms

Inventory of File WAFS_blended_2014102006f06.grib2

Science.gov Websites

) [%] 004 700 mb CTP 6 hour fcst In-Cloud Turbulence [%] spatial ave,code table 4.15=3,#points=1 005 700 mb CTP 6 hour fcst In-Cloud Turbulence [%] spatial max,code table 4.15=3,#points=1 006 600 mb CTP 6 hour fcst In-Cloud Turbulence [%] spatial ave,code table 4.15=3,#points=1 007 600 mb CTP 6 hour fcst In

From Survey to FEM Analysis for Documentation of Built Heritage: the Case Study of Villa Revedin-Bolasco

NASA Astrophysics Data System (ADS)

Guarnieri, A.; Fissore, F.; Masiero, A.; Di Donna, A.; Coppa, U.; Vettore, A.

2017-05-01

In the last decade advances in the fields of close-range photogrammetry, terrestrial laser scanning (TLS) and computer vision (CV) have enabled to collect different kind of information about a Cultural Heritage objects and to carry out highly accurate 3D models. Additionally, the integration between laser scanning technology and Finite Element Analysis (FEA) is gaining particular interest in recent years for structural analysis of built heritage, since the increasing computational capabilities allow to manipulate large datasets. In this note we illustrate the approach adopted for surveying, 3D modeling and structural analysis of Villa Revedin-Bolasco, a magnificent historical building located in the small walled town of Castelfranco Veneto, in northern Italy. In 2012 CIRGEO was charged by the University of Padova to carry out a survey of the Villa and Park, as preliminary step for subsequent restoration works. The inner geometry of the Villa was captured with two Leica Disto D3a BT hand-held laser meters, while the outer walls of the building were surveyed with a Leica C10 and a Faro Focus 3D 120 terrestrial laser scanners. Ancillary GNSS measurements were also collected for 3D laser model georeferencing. A solid model was then generated from the laser global point cloud in Rhinoceros software, and portion of it was used for simulation in a Finite Element Analysis (FEA). In the paper we discuss in detail all the steps and challenges addressed and solutions adopted concerning the survey, solid modeling and FEA from laser scanning data of the historical complex of Villa Revedin-Bolasco.

Observations of the boundary layer, cloud, and aerosol variability in the southeast Pacific near-coastal marine stratocumulus during VOCALS-REx

NASA Astrophysics Data System (ADS)

Zheng, X.; Albrecht, B.; Jonsson, H. H.; Khelif, D.; Feingold, G.; Minnis, P.; Ayers, K.; Chuang, P.; Donaher, S.; Rossiter, D.; Ghate, V.; Ruiz-Plancarte, J.; Sun-Mack, S.

2011-09-01

Aircraft observations made off the coast of northern Chile in the Southeastern Pacific (20° S, 72° W; named Point Alpha) from 16 October to 13 November 2008 during the VAMOS Ocean-Cloud- Atmosphere-Land Study-Regional Experiment (VOCALS-REx), combined with meteorological reanalysis, satellite measurements, and radiosonde data, are used to investigate the boundary layer (BL) and aerosol-cloud-drizzle variations in this region. On days without predominately synoptic and meso-scale influences, the BL at Point Alpha was typical of a non-drizzling stratocumulus-topped BL. Entrainment rates calculated from the near cloud-top fluxes and turbulence in the BL at Point Alpha appeared to be weaker than those in the BL over the open ocean west of Point Alpha and the BL near the coast of the northeast Pacific. The cloud liquid water path (LWP) varied between 15 g m-2 and 160 g m-2. The BL had a depth of 1140 ± 120 m, was generally well-mixed and capped by a sharp inversion without predominately synoptic and meso-scale influences. The wind direction generally switched from southerly within the BL to northerly above the inversion. On days when a synoptic system and related mesoscale costal circulations affected conditions at Point Alpha (29 October-4 November), a moist layer above the inversion moved over Point Alpha, and the total-water mixing ratio above the inversion was larger than that within the BL. The accumulation mode aerosol varied from 250 to 700 cm-3 within the BL, and CCN at 0.2 % supersaturation within the BL ranged between 150 and 550 cm-3. The main aerosol source at Point Alpha was horizontal advection within the BL from south. The average cloud droplet number concentration ranged between 80 and 400 cm-3. While the mean LWP retrieved from GOES was in good agreement with the in situ measurements, the GOES-derived cloud droplet effective radius tended to be larger than that from the aircraft in situ observations near cloud top. The aerosol and cloud LWP relationship reveals that during the typical well-mixed BL days the cloud LWP increased with the CCN concentrations. On the other hand, meteorological factors and the decoupling processes have large influences on the cloud LWP variation as well.

A multi-year comparison of lower stratospheric temperatures from CHAMP radio occultation data with MSU/AMSU records

NASA Astrophysics Data System (ADS)

Steiner, A. K.; Kirchengast, G.; Borsche, M.; Foelsche, U.; Schoengassner, T.

2007-11-01

Long-term upper air temperature records have been established by different groups with considerable effort from radiosonde data and from satellite based (Advanced) Microwave Sounding Unit (MSU/AMSU) measurements, the latter providing information on layer-average stratospheric and tropospheric brightness temperatures. Comparisons of the temperature series show discrepancies not only with respect to radiosonde data but also between MSU data sets stemming from different retrievals. In this context the Global Navigation Satellite System radio occultation (RO) technique offers new possibilities by providing high quality observations of the atmosphere in an active limb sounding mode. RO temperature climatologies have been constructed at the WegCenter/UniGraz based on RO observations of the CHAllenging Minisatellite Payload for geoscientific research (CHAMP) satellite since September 2001, and based on a few months of RO data from other satellite missions (SAC-C, GRACE, COSMIC). Focusing on the MSU lower stratosphere channel (TLS), synthetic TLS temperatures were calculated by applying global weighting functions to zonal-mean monthly mean RO temperature climatology profiles for September 2001-December 2006. These synthetic CHAMP TLS temperatures were compared to recent MSU TLS records from the University of Alabama in Huntsville (UAH, USA) and from Remote Sensing Systems (RSS, USA), as well as to synthetic TLS temperatures from HadAT2 radiosonde data (Hadley Centre/MetOffice, UK) and ECMWF (European Centre for Medium-Range Weather Forecasts) analyses. In terms of TLS temperature anomalies, overall very good agreement of CHAMP temperature anomalies with UAH, RSS, and ECMWF anomalies was found for intra-annual variability (RMS difference of de-trended data <0.1 K globally, 0.1 K in the tropics, <0.25 K in the extratropics), while HadAT2 anomalies show larger differences (factor of two globally and more in the extratropics). Regarding 2001-2006 trends, UAH and RSS exhibit a statistically significant cooling trend difference to CHAMP globally (-0.30 to -0.36 K/5 yrs), stemming mainly from the tropics (-0.40 to -0.42 K/5 yrs), while in the extratropics the cooling trend differences are not significant. The contribution of known error sources regarding the RO data and the related synthetic-MSU computation procedure is about an order of magnitude smaller than these trend differences. Resolution of the trend discrepancy thus requires either additional, so far overlooked, sources of error in the RO TLS record or the presence of currently unresolved biases in the MSU records. SAC-C, GRACE, and COSMIC TLS temperatures closely match CHAMP temperatures, indicating the consistency and homogeneity of the RO data series. The results underpin the benefit of having multiple independent estimates of the same variable from different instruments for detecting residual weaknesses in otherwise high-quality climate records. Continued inter-comparison, and exploiting the traceability of the RO data to the universal time standard (UTC), then enables us to further reduce the uncertainty in the climate records in absolute terms.

Impact of survey workflow on precision and accuracy of terrestrial LiDAR datasets

NASA Astrophysics Data System (ADS)

Gold, P. O.; Cowgill, E.; Kreylos, O.

2009-12-01

Ground-based LiDAR (Light Detection and Ranging) survey techniques are enabling remote visualization and quantitative analysis of geologic features at unprecedented levels of detail. For example, digital terrain models computed from LiDAR data have been used to measure displaced landforms along active faults and to quantify fault-surface roughness. But how accurately do terrestrial LiDAR data represent the true ground surface, and in particular, how internally consistent and precise are the mosaiced LiDAR datasets from which surface models are constructed? Addressing this question is essential for designing survey workflows that capture the necessary level of accuracy for a given project while minimizing survey time and equipment, which is essential for effective surveying of remote sites. To address this problem, we seek to define a metric that quantifies how scan registration error changes as a function of survey workflow. Specifically, we are using a Trimble GX3D laser scanner to conduct a series of experimental surveys to quantify how common variables in field workflows impact the precision of scan registration. Primary variables we are testing include 1) use of an independently measured network of control points to locate scanner and target positions, 2) the number of known-point locations used to place the scanner and point clouds in 3-D space, 3) the type of target used to measure distances between the scanner and the known points, and 4) setting up the scanner over a known point as opposed to resectioning of known points. Precision of the registered point cloud is quantified using Trimble Realworks software by automatic calculation of registration errors (errors between locations of the same known points in different scans). Accuracy of the registered cloud (i.e., its ground-truth) will be measured in subsequent experiments. To obtain an independent measure of scan-registration errors and to better visualize the effects of these errors on a registered point cloud, we scan from multiple locations an object of known geometry (a cylinder mounted above a square box). Preliminary results show that even in a controlled experimental scan of an object of known dimensions, there is significant variability in the precision of the registered point cloud. For example, when 3 scans of the central object are registered using 4 known points (maximum time, maximum equipment), the point clouds align to within ~1 cm (normal to the object surface). However, when the same point clouds are registered with only 1 known point (minimum time, minimum equipment), misalignment of the point clouds can range from 2.5 to 5 cm, depending on target type. The greater misalignment of the 3 point clouds when registered with fewer known points stems from the field method employed in acquiring the dataset and demonstrates the impact of field workflow on LiDAR dataset precision. By quantifying the degree of scan mismatch in results such as this, we can provide users with the information needed to maximize efficiency in remote field surveys.

Effect of convection on the thermal structure of the troposphere and lower stratosphere including the tropical tropopause layer in the South Asian monsoon region

NASA Astrophysics Data System (ADS)

Muhsin, M.; Sunilkumar, S. V.; Venkat Ratnam, M.; Parameswaran, K.; Krishna Murthy, B. V.; Emmanuel, Maria

2018-04-01

Influence of convection on the thermal structure of Troposphere and Lower Stratosphere (TLS) is investigated using radiosonde data, obtained from Trivandrum (8.5°N, 76.9°E), Gadanki (13.5°N, 79.2°E), Bhubaneswar (20.25°N, 85.83°E), Kolkata (22.65°N, 88.45°E) and Singapore (1.37°N, 103.98°E), collected during different convective categories classified based on the altitude of deep convective cloud tops (CT) in the period 2008-2014. During deep convective events, the temperature showed lower tropospheric cooling, an upper tropospheric warming and an anomalous cooling (warming) below (above) the cold point tropopause (CPT) with respect to the clear-sky value. While warming in the upper troposphere is strongest (∼2-4 K) around 10-12 km, anomalous cooling (warming) below (above) the CPT is maximum around 15.5 km (17.5 km) with values in the range of-2 to -4 K (3-6 K). These temperature perturbations are observed 5-6 days prior to the convective events. In response to deep convection, surface cooling up to ∼ -4 K is also observed. This study showed that the magnitude of cold and warm anomalies increases with strength of convection. During deep convection, the potential temperature (θ) shows a decrease (<5 K) in the tropical tropopause layer (TTL) from the TTL-base up to CPT compared to that on clear-sky days, confirming the vertical mixing of convective air from the lower atmosphere to the TTL-levels. Correlation analysis between different TTL parameters suggests that, as the cloud top altitude increases, along with the adiabatic process, diabatic process also plays a major role in the TTL. An interesting feature observed during deep convection is the ascent of TTL-base by ∼1.5 km and descent of CPT and TTL-top by 0.5 km, which effectively thins the TTL by ∼2 km.

Comparison of 3D point clouds produced by LIDAR and UAV photoscan in the Rochefort cave (Belgium)

NASA Astrophysics Data System (ADS)

Watlet, Arnaud; Triantafyllou, Antoine; Kaufmann, Olivier; Le Mouelic, Stéphane

2016-04-01

Amongst today's techniques that are able to produce 3D point clouds, LIDAR and UAV (Unmanned Aerial Vehicle) photogrammetry are probably the most commonly used. Both methods have their own advantages and limitations. LIDAR scans create high resolution and high precision 3D point clouds, but such methods are generally costly, especially for sporadic surveys. Compared to LIDAR, UAV (e.g. drones) are cheap and flexible to use in different kind of environments. Moreover, the photogrammetric processing workflow of digital images taken with UAV becomes easier with the rise of many affordable software packages (e.g. Agisoft, PhotoModeler3D, VisualSFM). We present here a challenging study made at the Rochefort Cave Laboratory (South Belgium) comprising surface and underground surveys. The site is located in the Belgian Variscan fold-and-thrust belt, a region that shows many karstic networks within Devonian limestone units. A LIDAR scan has been acquired in the main chamber of the cave (~ 15000 m³) to spatialize 3D point cloud of its inner walls and infer geological beds and structures. Even if the use of LIDAR instrument was not really comfortable in such caving environment, the collected data showed a remarkable precision according to few control points geometry. We also decided to perform another challenging survey of the same cave chamber by modelling a 3D point cloud using photogrammetry of a set of DSLR camera pictures taken from the ground and UAV pictures. The aim was to compare both techniques in terms of (i) implementation of data acquisition and processing, (ii) quality of resulting 3D points clouds (points density, field vs cloud recovery and points precision), (iii) their application for geological purposes. Through Rochefort case study, main conclusions are that LIDAR technique provides higher density point clouds with slightly higher precision than photogrammetry method. However, 3D data modeled by photogrammetry provide visible light spectral information for each modeled voxel and interpolated vertices that can be a useful attributes for clustering during data treatment. We thus illustrate such applications to the Rochefort cave by using both sources of 3D information to quantify the orientation of inaccessible geological structures (e.g. faults, tectonic and gravitational joints, and sediments bedding), cluster these structures using color information gathered from UAV's 3D point cloud and compare these data to structural data surveyed on the field. An additional drone photoscan was also conducted in the surface sinkhole giving access to the surveyed underground cavity to seek geological bodies' connections.

Historic photos and TLS data fusion for the 3D reconstruction of a monastery altar ensemble

NASA Astrophysics Data System (ADS)

Hanke, K.; Moser, M.; Rampold, R.

2015-08-01

The basis of the photogrammetric reconstruction of the altar at the monastery / church are 2 historic photos from around 1920's as well as a 3D documentation of the church from terrestrial laser scanning. The point cloud from the laser scan was the starting point for an approximate computation of the interior and exterior orientation of that image that also contains parts of the altar area that still do exist. Using a projection of the recent geometry into the image allowed the analysis of changes of the altar ensemble since the time of image acquisition. Those parts that are still in situ are the origin for further action. Whether fragments and parts should be used further or newly positioned was decided in the next phase of reconstruction process. The focus of the first step of the workflow was at the outlines of the parts in the center of the altar. Using a monoplotting approach and assuming that the profiles are vertical and parallel to each other these object could be definitely compiled. Theses outlines also allowed an approximate determination of the interior and exterior orientation of the second historic photograph in which otherwise the complete connection to the recent altar area was missing. The side parts of the altar showed to be more complicated for reconstruction. The difference in depth of the varying edges could not be distinguished any more in the images. Such, the sequence and form of the different edges was adopted, scaled and transferred from the central part of the altar to the peripheral ones. Using this geometric information it was possible to define the necessary projection planes for the monoplotting restitution of the visible outlines. A concluding rigorous control was accomplished by back projection of the geometry into both historical images.

Structure-From for Calibration of a Vehicle Camera System with Non-Overlapping Fields-Of in AN Urban Environment

NASA Astrophysics Data System (ADS)

Hanel, A.; Stilla, U.

2017-05-01

Vehicle environment cameras observing traffic participants in the area around a car and interior cameras observing the car driver are important data sources for driver intention recognition algorithms. To combine information from both camera groups, a camera system calibration can be performed. Typically, there is no overlapping field-of-view between environment and interior cameras. Often no marked reference points are available in environments, which are a large enough to cover a car for the system calibration. In this contribution, a calibration method for a vehicle camera system with non-overlapping camera groups in an urban environment is described. A-priori images of an urban calibration environment taken with an external camera are processed with the structure-frommotion method to obtain an environment point cloud. Images of the vehicle interior, taken also with an external camera, are processed to obtain an interior point cloud. Both point clouds are tied to each other with images of both image sets showing the same real-world objects. The point clouds are transformed into a self-defined vehicle coordinate system describing the vehicle movement. On demand, videos can be recorded with the vehicle cameras in a calibration drive. Poses of vehicle environment cameras and interior cameras are estimated separately using ground control points from the respective point cloud. All poses of a vehicle camera estimated for different video frames are optimized in a bundle adjustment. In an experiment, a point cloud is created from images of an underground car park, as well as a point cloud of the interior of a Volkswagen test car is created. Videos of two environment and one interior cameras are recorded. Results show, that the vehicle camera poses are estimated successfully especially when the car is not moving. Position standard deviations in the centimeter range can be achieved for all vehicle cameras. Relative distances between the vehicle cameras deviate between one and ten centimeters from tachymeter reference measurements.

The Effect of Using a Visual Representation Tool in a Teaching-Learning Sequence for Teaching Newton's Third Law

ERIC Educational Resources Information Center

Savinainen, Antti; Mäkynen, Asko; Nieminen, Pasi; Viiri, Jouni

2017-01-01

This paper presents a research-based teaching-learning sequence (TLS) that focuses on the notion of interaction in teaching Newton's third law (N3 law) which is, as earlier studies have shown, a challenging topic for students to learn. The TLS made systematic use of a visual representation tool--an interaction diagram (ID)--highlighting…

SSO - Single-Sign-On Profile: Authentication Mechanisms Version 2.0

NASA Astrophysics Data System (ADS)

Taffoni, Giuliano; Schaaf, André; Rixon, Guy; Major, Brian; Taffoni, Giuliano

2017-05-01

Approved client-server authentication mechanisms are described for the IVOA single-sign-on profile: No Authentication; HTTP Basic Authentication; TLS with passwords; TLS with client certificates; Cookies; Open Authentication; Security Assertion Markup Language; OpenID. Normative rules are given for the implementation of these mechanisms, mainly by reference to pre-existing standards. The Authorization mechanisms are out of the scope of this document.

Incorporating geometrically complex vegetation in a computational fluid dynamic framework

NASA Astrophysics Data System (ADS)

Boothroyd, Richard; Hardy, Richard; Warburton, Jeff; Rosser, Nick

2015-04-01

Vegetation is known to have a significant influence on the hydraulic, geomorphological, and ecological functioning of river systems. Vegetation acts as a blockage to flow, thereby causing additional flow resistance and influencing flow dynamics, in particular flow conveyance. These processes need to be incorporated into flood models to improve predictions used in river management. However, the current practice in representing vegetation in hydraulic models is either through roughness parameterisation or process understanding derived experimentally from flow through highly simplified configurations of fixed, rigid cylinders. It is suggested that such simplifications inadequately describe the geometric complexity that characterises vegetation, and therefore the modelled flow dynamics may be oversimplified. This paper addresses this issue by using an approach combining field and numerical modelling techniques. Terrestrial Laser Scanning (TLS) with waveform processing has been applied to collect a sub-mm, 3-dimensional representation of Prunus laurocerasus, an invasive species to the UK that has been increasingly recorded in riparian zones. Multiple scan perspectives produce a highly detailed point cloud (>5,000,000 individual data points) which is reduced in post processing using an octree-based voxelisation technique. The method retains the geometric complexity of the vegetation by subdividing the point cloud into 0.01 m3 cubic voxels. The voxelised representation is subsequently read into a computational fluid dynamic (CFD) model using a Mass Flux Scaling Algorithm, allowing the vegetation to be directly represented in the modelling framework. Results demonstrate the development of a complex flow field around the vegetation. The downstream velocity profile is characterised by two distinct inflection points. A high velocity zone in the near-bed (plant-stem) region is apparent due to the lack of significant near-bed foliage. Above this, a zone of reduced velocity is found where the bulk of the vegetation blockage is more evenly distributed. Finally, flow rapidly recovers towards the free-stream region. Analysis of the pressure field demonstrates that drag force is non-linearly distributed over the vegetation. In the downstream direction, the drag force decreases through the vegetation. The experiment is extended to emulate vegetation reconfiguration in the flow, and is achieved through rotation of the vegetation about a fixed position (roots) on the bed. The experiment demonstrates a reduction in the total drag force and a shift in the contribution of different drag mechanisms as the degree of rotation increases. In the upright state, form drag dominates, but with additional rotation, the contribution of viscous drag increases. Consequently, the total drag force is found to decrease by approximately one third between the upright and fully rotated states of reconfiguration. Explicit representation of vegetation geometry therefore enables a re-evaluation of vegetative flow resistance. This presents an opportunity to move away from the conventional methods of representing vegetation in hydraulic models, i.e. roughness parameterisation, in favour of a more physically determined approach.

Cloud-point detection using a portable thickness shear mode crystal resonator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mansure, A.J.; Spates, J.J.; Germer, J.W.

1997-08-01

The Thickness Shear Mode (TSM) crystal resonator monitors the crude oil by propagating a shear wave into the oil. The coupling of the shear wave and the crystal vibrations is a function of the viscosity of the oil. By driving the crystal with circuitry that incorporates feedback, it is possible to determine the change from Newtonian to non-Newtonian viscosity at the cloud point. A portable prototype TSM Cloud Point Detector (CPD) has performed flawlessly during field and lab tests proving the technique is less subjective or operator dependent than the ASTM standard. The TSM CPD, in contrast to standard viscositymore » techniques, makes the measurement in a closed container capable of maintaining up to 100 psi. The closed container minimizes losses of low molecular weight volatiles, allowing samples (25 ml) to be retested with the addition of chemicals. By cycling/thermal soaking the sample, the effects of thermal history can be investigated and eliminated as a source of confusion. The CPD is portable, suitable for shipping the field offices for use by personnel without special training or experience in cloud point measurements. As such, it can make cloud point data available without the delays and inconvenience of sending samples to special labs. The crystal resonator technology can be adapted to in-line monitoring of cloud point and deposition detection.« less

Metric Scale Calculation for Visual Mapping Algorithms

NASA Astrophysics Data System (ADS)

Hanel, A.; Mitschke, A.; Boerner, R.; Van Opdenbosch, D.; Hoegner, L.; Brodie, D.; Stilla, U.

2018-05-01

Visual SLAM algorithms allow localizing the camera by mapping its environment by a point cloud based on visual cues. To obtain the camera locations in a metric coordinate system, the metric scale of the point cloud has to be known. This contribution describes a method to calculate the metric scale for a point cloud of an indoor environment, like a parking garage, by fusing multiple individual scale values. The individual scale values are calculated from structures and objects with a-priori known metric extension, which can be identified in the unscaled point cloud. Extensions of building structures, like the driving lane or the room height, are derived from density peaks in the point distribution. The extension of objects, like traffic signs with a known metric size, are derived using projections of their detections in images onto the point cloud. The method is tested with synthetic image sequences of a drive with a front-looking mono camera through a virtual 3D model of a parking garage. It has been shown, that each individual scale value improves either the robustness of the fused scale value or reduces its error. The error of the fused scale is comparable to other recent works.

Early-stage aeolian protodune development and migration

NASA Astrophysics Data System (ADS)

Nield, J. M.; Baddock, M. C.; Wiggs, G.

2017-12-01

Early-stage bedforms, or protodunes, can be observed to form on sandy beaches, desert gravels or superimposed on the surfaces of larger dunes and can develop topography of 0.1 m or more over several hours. These protodunes are the precursors to embryo and eventually mature dunes, and so it is important to understand how feedbacks between flow, transport and form contribute to this development sequence. Whilst theory and conceptual models have offered some explanation for protodune existence and development, we know surprisingly little about how these bedforms initiate and migrate because it is difficult to measure small changes in form (millimetres; seconds) on highly active surfaces of limited topographic expression. Here, we employ terrestrial laser scanning (TLS) to measure morphological change at the high frequency and spatial resolution (sub-millimetre) required to gain new insights into protodune behaviour. Along with TLS derived saltation and surface moisture, additional sediment flux and windspeed measurements help to elucidate how the protodune topography interacts with airflow and sand transport. We focus on a number of coastal bedforms in various development stages including a 0.06 m high protodune which grew vertically by 0.005 m in two hours with the switch from erosion to deposition identified to occur at a point 0.07 m upwind of the crest. This growth was associated with a reduction in time-averaged sediment flux of 18% over the crestal region. We also observed a decline in lower stoss slope steepness (by 3°) and a steepening of the lee slope, indicating a reshaping of initial protodune form towards the morphology of a more mature dune. Our findings highlight the crucial role of form-flow feedbacks, even on very small bedforms, in driving early-stage bedform growth and development, and show how the use of high resolution TLS to measure both surface topography and grains moving above the surface, can offer new insights into a long standing deficiency in aeolian geomorphology.

GPU-Based Point Cloud Superpositioning for Structural Comparisons of Protein Binding Sites.

PubMed

Leinweber, Matthias; Fober, Thomas; Freisleben, Bernd

2018-01-01

In this paper, we present a novel approach to solve the labeled point cloud superpositioning problem for performing structural comparisons of protein binding sites. The solution is based on a parallel evolution strategy that operates on large populations and runs on GPU hardware. The proposed evolution strategy reduces the likelihood of getting stuck in a local optimum of the multimodal real-valued optimization problem represented by labeled point cloud superpositioning. The performance of the GPU-based parallel evolution strategy is compared to a previously proposed CPU-based sequential approach for labeled point cloud superpositioning, indicating that the GPU-based parallel evolution strategy leads to qualitatively better results and significantly shorter runtimes, with speed improvements of up to a factor of 1,500 for large populations. Binary classification tests based on the ATP, NADH, and FAD protein subsets of CavBase, a database containing putative binding sites, show average classification rate improvements from about 92 percent (CPU) to 96 percent (GPU). Further experiments indicate that the proposed GPU-based labeled point cloud superpositioning approach can be superior to traditional protein comparison approaches based on sequence alignments.

Real object-based 360-degree integral-floating display using multiple depth camera

NASA Astrophysics Data System (ADS)

Erdenebat, Munkh-Uchral; Dashdavaa, Erkhembaatar; Kwon, Ki-Chul; Wu, Hui-Ying; Yoo, Kwan-Hee; Kim, Young-Seok; Kim, Nam

2015-03-01

A novel 360-degree integral-floating display based on the real object is proposed. The general procedure of the display system is similar with conventional 360-degree integral-floating displays. Unlike previously presented 360-degree displays, the proposed system displays the 3D image generated from the real object in 360-degree viewing zone. In order to display real object in 360-degree viewing zone, multiple depth camera have been utilized to acquire the depth information around the object. Then, the 3D point cloud representations of the real object are reconstructed according to the acquired depth information. By using a special point cloud registration method, the multiple virtual 3D point cloud representations captured by each depth camera are combined as single synthetic 3D point cloud model, and the elemental image arrays are generated for the newly synthesized 3D point cloud model from the given anamorphic optic system's angular step. The theory has been verified experimentally, and it shows that the proposed 360-degree integral-floating display can be an excellent way to display real object in the 360-degree viewing zone.

The Feasibility of 3d Point Cloud Generation from Smartphones

NASA Astrophysics Data System (ADS)

Alsubaie, N.; El-Sheimy, N.

2016-06-01

This paper proposes a new technique for increasing the accuracy of direct geo-referenced image-based 3D point cloud generated from low-cost sensors in smartphones. The smartphone's motion sensors are used to directly acquire the Exterior Orientation Parameters (EOPs) of the captured images. These EOPs, along with the Interior Orientation Parameters (IOPs) of the camera/ phone, are used to reconstruct the image-based 3D point cloud. However, because smartphone motion sensors suffer from poor GPS accuracy, accumulated drift and high signal noise, inaccurate 3D mapping solutions often result. Therefore, horizontal and vertical linear features, visible in each image, are extracted and used as constraints in the bundle adjustment procedure. These constraints correct the relative position and orientation of the 3D mapping solution. Once the enhanced EOPs are estimated, the semi-global matching algorithm (SGM) is used to generate the image-based dense 3D point cloud. Statistical analysis and assessment are implemented herein, in order to demonstrate the feasibility of 3D point cloud generation from the consumer-grade sensors in smartphones.

Registration of Vehicle-Borne Point Clouds and Panoramic Images Based on Sensor Constellations

PubMed Central

Yao, Lianbi; Wu, Hangbin; Li, Yayun; Meng, Bin; Qian, Jinfei; Liu, Chun; Fan, Hongchao

2017-01-01

A mobile mapping system (MMS) is usually utilized to collect environmental data on and around urban roads. Laser scanners and panoramic cameras are the main sensors of an MMS. This paper presents a new method for the registration of the point clouds and panoramic images based on sensor constellation. After the sensor constellation was analyzed, a feature point, the intersection of the connecting line between the global positioning system (GPS) antenna and the panoramic camera with a horizontal plane, was utilized to separate the point clouds into blocks. The blocks for the central and sideward laser scanners were extracted with the segmentation feature points. Then, the point clouds located in the blocks were separated from the original point clouds. Each point in the blocks was used to find the accurate corresponding pixel in the relative panoramic images via a collinear function, and the position and orientation relationship amongst different sensors. A search strategy is proposed for the correspondence of laser scanners and lenses of panoramic cameras to reduce calculation complexity and improve efficiency. Four cases of different urban road types were selected to verify the efficiency and accuracy of the proposed method. Results indicate that most of the point clouds (with an average of 99.7%) were successfully registered with the panoramic images with great efficiency. Geometric evaluation results indicate that horizontal accuracy was approximately 0.10–0.20 m, and vertical accuracy was approximately 0.01–0.02 m for all cases. Finally, the main factors that affect registration accuracy, including time synchronization amongst different sensors, system positioning and vehicle speed, are discussed. PMID:28398256

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, Shawn

This code consists of Matlab routines which enable the user to perform non-manifold surface reconstruction via triangulation from high dimensional point cloud data. The code was based on an algorithm originally developed in [Freedman (2007), An Incremental Algorithm for Reconstruction of Surfaces of Arbitrary Codimension Computational Geometry: Theory and Applications, 36(2):106-116]. This algorithm has been modified to accommodate non-manifold surface according to the work described in [S. Martin and J.-P. Watson (2009), Non-Manifold Surface Reconstruction from High Dimensional Point Cloud DataSAND #5272610].The motivation for developing the code was a point cloud describing the molecular conformation space of cyclooctane (C8H16). Cyclooctanemore » conformation space was represented using points in 72 dimensions (3 coordinates for each molecule). The code was used to triangulate the point cloud and thereby study the geometry and topology of cyclooctane. Futures applications are envisioned for peptides and proteins.« less

Classification of Mobile Laser Scanning Point Clouds from Height Features

NASA Astrophysics Data System (ADS)

Zheng, M.; Lemmens, M.; van Oosterom, P.

2017-09-01

The demand for 3D maps of cities and road networks is steadily growing and mobile laser scanning (MLS) systems are often the preferred geo-data acquisition method for capturing such scenes. Because MLS systems are mounted on cars or vans they can acquire billions of points of road scenes within a few hours of survey. Manual processing of point clouds is labour intensive and thus time consuming and expensive. Hence, the need for rapid and automated methods for 3D mapping of dense point clouds is growing exponentially. The last five years the research on automated 3D mapping of MLS data has tremendously intensified. In this paper, we present our work on automated classification of MLS point clouds. In the present stage of the research we exploited three features - two height components and one reflectance value, and achieved an overall accuracy of 73 %, which is really encouraging for further refining our approach.

Outdoor Illegal Construction Identification Algorithm Based on 3D Point Cloud Segmentation

NASA Astrophysics Data System (ADS)

An, Lu; Guo, Baolong

2018-03-01

Recently, various illegal constructions occur significantly in our surroundings, which seriously restrict the orderly development of urban modernization. The 3D point cloud data technology is used to identify the illegal buildings, which could address the problem above effectively. This paper proposes an outdoor illegal construction identification algorithm based on 3D point cloud segmentation. Initially, in order to save memory space and reduce processing time, a lossless point cloud compression method based on minimum spanning tree is proposed. Then, a ground point removing method based on the multi-scale filtering is introduced to increase accuracy. Finally, building clusters on the ground can be obtained using a region growing method, as a result, the illegal construction can be marked. The effectiveness of the proposed algorithm is verified using a publicly data set collected from the International Society for Photogrammetry and Remote Sensing (ISPRS).

Hyperactive gp130/STAT3‐driven gastric tumourigenesis promotes submucosal tertiary lymphoid structure development

PubMed Central

Hill, David G.; Yu, Liang; Gao, Hugh; Balic, Jesse J.; West, Alison; Oshima, Hiroko; McLeod, Louise; Oshima, Masanobu; Gallimore, Awen; D'Costa, Kimberley; Bhathal, Prithi S.; Sievert, William; Ferrero, Richard L.

2018-01-01

Tertiary lymphoid structures (TLSs) display phenotypic and functional characteristics of secondary lymphoid organs, and often develop in tissues affected by chronic inflammation, as well as in certain inflammation‐associated cancers where they are prognostic of improved patient survival. However, the mechanisms that govern the development of tumour‐associated TLSs remain ill‐defined. Here, we observed tumour‐associated TLSs in a preclinical mouse model (gp130 F/F) of gastric cancer, where tumourigenesis is dependent on hyperactive STAT3 signalling through the common IL‐6 family signalling receptor, gp130. Gastric tumourigenesis was associated with the development of B and T cell‐rich submucosal lymphoid aggregates, containing CD21+ cellular networks and high endothelial venules. Temporally, TLS formation coincided with the development of gastric adenomas and induction of homeostatic chemokines including Cxcl13, Ccl19 and Ccl21. Reflecting the requirement of gp130‐driven STAT3 signalling for gastric tumourigenesis, submucosal TLS development was also STAT3‐dependent, but independent of the cytokine IL‐17 which has been linked with lymphoid neogenesis in chronic inflammation and autoimmunity. Interestingly, upregulated lymphoid chemokine expression and TLS formation were also observed in a chronic gastritis model induced by Helicobacter felis infection. Tumour‐associated TLSs were also observed in patients with intestinal‐type gastric cancer, and a gene signature linked with TLS development in gp130 F/F mice was associated with advanced clinical disease, but was not prognostic of patient survival. Collectively, our in vivo data reveal that hyperactive gp130‐STAT3 signalling closely links gastric tumourigenesis with lymphoid neogenesis, and while a TLS gene signature was associated with advanced gastric cancer in patients, it did not indicate a favourable prognosis. PMID:29417587

a Comparison of Uav and Tls Data for Soil Roughness Assessment

NASA Astrophysics Data System (ADS)

Milenković, M.; Karel, W.; Ressl, C.; Pfeifer, N.

2016-06-01

Soil roughness represents fine-scale surface geometry which figures in many geophysical models. While static photogrammetric techniques (terrestrial images and laser scanning) have been recently proposed as a new source for deriving roughness heights, there is still need to overcome acquisition scale and viewing geometry issues. By contrast to the static techniques, images taken from unmanned aerial vehicles (UAV) can maintain near-nadir looking geometry over scales of several agricultural fields. This paper presents a pilot study on high-resolution, soil roughness reconstruction and assessment from UAV images over an agricultural plot. As a reference method, terrestrial laser scanning (TLS) was applied on a 10 m x 1.5 m subplot. The UAV images were self-calibrated and oriented within a bundle adjustment, and processed further up to a dense-matched digital surface model (DSM). The analysis of the UAV- and TLS-DSMs were performed in the spatial domain based on the surface autocorrelation function and the correlation length, and in the frequency domain based on the roughness spectrum and the surface fractal dimension (spectral slope). The TLS- and UAV-DSM differences were found to be under ±1 cm, while the UAV DSM showed a systematic pattern below this scale, which was explained by weakly tied sub-blocks of the bundle block. The results also confirmed that the existing TLS methods leads to roughness assessment up to 5 mm resolution. However, for our UAV data, this was not possible to achieve, though it was shown that for spatial scales of 12 cm and larger, both methods appear to be usable. Additionally, this paper suggests a method to propagate measurement errors to the correlation length.

Quality assessment of the TLS data in conservation of monuments

NASA Astrophysics Data System (ADS)

Markiewicz, Jakub S.; Zawieska, Dorota

2015-06-01

Laser scanning has been recently confirming its high potential in the field of acquiring 3D data for architectural and engineering objects. The objective of this paper is to analyse the quality of the TLS data acquired for different surfaces of monumental objects, with consideration of distances and the scanning angles. Tests concerning the quality of the survey data and shapes of architectural objects, characterised by diversified curvature, structure and the uniformity of the surface, were performed. The obtained results proved that utilisation of terrestrial laser scanning techniques does not allow to achieve expected accuracy for some historical surfaces and it should be substituted by alternative, photogrammetric techniques. Therefore, the typology of constructions of historical objects is important not only for selection of the optimum technique of surveys, but also for its appropriate utilisation. The test objects were architectural details of the Main Hall of the Warsaw University of Technology. Scans were acquired using the 5006h scanner. Diversified geometry of scans was tested, and the relations between the distance and obtained accuracy were specified. In the case of numerous conservational works the precise surface reconstruction is often important, in order to specify damages. Therefore, the repeatability of obtained TLS results for selected surfaces was also tested. Different surfaces were analysed, which are composed of different materials having glittery elements and inhomogeneous structure. The obtained results and performed analyses revealed the high imperfections of the TLS technique applied for measuring surfaces of historical objects. The presented accuracy of measurements of projection of historical surfaces, obtained using the TLS technique may be applied by art conservators, museum professionals, archaeologists and other specialists, to perform wide analyses of historical heritage objects.