Sample records for trace image pattern

  1. X-ray mask and method for providing same

    DOEpatents

    Morales, Alfredo M [Pleasanton, CA; Skala, Dawn M [Fremont, CA

    2004-09-28

    The present invention describes a method for fabricating an x-ray mask tool which can achieve pattern features having lateral dimension of less than 1 micron. The process uses a thin photoresist and a standard lithographic mask to transfer an trace image pattern in the surface of a silicon wafer by exposing and developing the resist. The exposed portion of the silicon substrate is then anisotropically etched to provide an etched image of the trace image pattern consisting of a series of channels in the silicon having a high depth-to-width aspect ratio. These channels are then filled by depositing a metal such as gold to provide an inverse image of the trace image and thereby providing a robust x-ray mask tool.

  2. X-ray mask and method for providing same

    DOEpatents

    Morales, Alfredo M.; Skala, Dawn M.

    2002-01-01

    The present invention describes a method for fabricating an x-ray mask tool which can achieve pattern features having lateral dimension of less than 1 micron. The process uses a thin photoresist and a standard lithographic mask to transfer an trace image pattern in the surface of a silicon wafer by exposing and developing the resist. The exposed portion of the silicon substrate is then anisotropically etched to provide an etched image of the trace image pattern consisting of a series of channels in the silicon having a high depth-to-width aspect ratio. These channels are then filled by depositing a metal such as gold to provide an inverse image of the trace image and thereby providing a robust x-ray mask tool.

  3. Fiducial marker for correlating images

    DOEpatents

    Miller, Lisa Marie [Rocky Point, NY; Smith, Randy J [Wading River, NY; Warren, John B [Port Jefferson, NY; Elliott, Donald [Hampton Bays, NY

    2011-06-21

    The invention relates to a fiducial marker having a marking grid that is used to correlate and view images produced by different imaging modalities or different imaging and viewing modalities. More specifically, the invention relates to the fiducial marking grid that has a grid pattern for producing either a viewing image and/or a first analytical image that can be overlaid with at least one other second analytical image in order to view a light path or to image different imaging modalities. Depending on the analysis, the grid pattern has a single layer of a certain thickness or at least two layers of certain thicknesses. In either case, the grid pattern is imageable by each imaging or viewing modality used in the analysis. Further, when viewing a light path, the light path of the analytical modality cannot be visualized by viewing modality (e.g., a light microscope objective). By correlating these images, the ability to analyze a thin sample that is, for example, biological in nature but yet contains trace metal ions is enhanced. Specifically, it is desired to analyze both the organic matter of the biological sample and the trace metal ions contained within the biological sample without adding or using extrinsic labels or stains.

  4. Infrared spectroscopic imaging for noninvasive detection of latent fingerprints.

    PubMed

    Crane, Nicole J; Bartick, Edward G; Perlman, Rebecca Schwartz; Huffman, Scott

    2007-01-01

    The capability of Fourier transform infrared (FTIR) spectroscopic imaging to provide detailed images of unprocessed latent fingerprints while also preserving important trace evidence is demonstrated. Unprocessed fingerprints were developed on various porous and nonporous substrates. Data-processing methods used to extract the latent fingerprint ridge pattern from the background material included basic infrared spectroscopic band intensities, addition and subtraction of band intensity measurements, principal components analysis (PCA) and calculation of second derivative band intensities, as well as combinations of these various techniques. Additionally, trace evidence within the fingerprints was recovered and identified.

  5. Soil transference patterns on bras: Image processing and laboratory dragging experiments.

    PubMed

    Murray, Kathleen R; Fitzpatrick, Robert W; Bottrill, Ralph S; Berry, Ron; Kobus, Hilton

    2016-01-01

    In a recent Australian homicide, trace soil on the victim's clothing suggested she was initially attacked in her front yard and not the park where her body was buried. However the important issue that emerged during the trial was how soil was transferred to her clothing. This became the catalyst for designing a range of soil transference experiments (STEs) to study, recognise and classify soil patterns transferred onto fabric when a body is dragged across a soil surface. Soil deposits of interest in this murder were on the victim's bra and this paper reports the results of anthropogenic soil transfer to bra-cups and straps caused by dragging. Transfer patterns were recorded by digital photography and photomicroscopy. Eight soil transfer patterns on fabric, specific to dragging as the transfer method, appeared consistently throughout the STEs. The distinctive soil patterns were largely dependent on a wide range of soil features that were measured and identified for each soil tested using X-ray Diffraction and Non-Dispersive Infra-Red analysis. Digital photographs of soil transfer patterns on fabric were analysed using image processing software to provide a soil object-oriented classification of all soil objects with a diameter of 2 pixels and above transferred. Although soil transfer patterns were easily identifiable by naked-eye alone, image processing software provided objective numerical data to support this traditional (but subjective) interpretation. Image software soil colour analysis assigned a range of Munsell colours to identify and compare trace soil on fabric to other trace soil evidence from the same location; without requiring a spectrophotometer. Trace soil from the same location was identified by linking soils with similar dominant and sub-dominant Munsell colour peaks. Image processing numerical data on the quantity of soil transferred to fabric, enabled a relationship to be discovered between soil type, clay mineralogy (smectite), particle size and soil moisture content that would not have been possible otherwise. Soil type (e.g. Anthropogenic, gravelly sandy loam soil or Natural, organic-rich soil), clay mineralogy (smectite) and soil moisture content were the greatest influencing factors in all the dragging soil transference tests (both naked eye and measured properties) to explain the eight categories of soil transference patterns recorded. This study was intended to develop a method for dragging soil transference laboratory experiments and create a baseline of preliminary soil type/property knowledge. Results confirm the need to better understand soil behaviour and properties of clothing fabrics by further testing of a wider range of soil types and clay mineral properties. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  6. Respiratory trace feature analysis for the prediction of respiratory-gated PET quantification.

    PubMed

    Wang, Shouyi; Bowen, Stephen R; Chaovalitwongse, W Art; Sandison, George A; Grabowski, Thomas J; Kinahan, Paul E

    2014-02-21

    The benefits of respiratory gating in quantitative PET/CT vary tremendously between individual patients. Respiratory pattern is among many patient-specific characteristics that are thought to play an important role in gating-induced imaging improvements. However, the quantitative relationship between patient-specific characteristics of respiratory pattern and improvements in quantitative accuracy from respiratory-gated PET/CT has not been well established. If such a relationship could be estimated, then patient-specific respiratory patterns could be used to prospectively select appropriate motion compensation during image acquisition on a per-patient basis. This study was undertaken to develop a novel statistical model that predicts quantitative changes in PET/CT imaging due to respiratory gating. Free-breathing static FDG-PET images without gating and respiratory-gated FDG-PET images were collected from 22 lung and liver cancer patients on a PET/CT scanner. PET imaging quality was quantified with peak standardized uptake value (SUV(peak)) over lesions of interest. Relative differences in SUV(peak) between static and gated PET images were calculated to indicate quantitative imaging changes due to gating. A comprehensive multidimensional extraction of the morphological and statistical characteristics of respiratory patterns was conducted, resulting in 16 features that characterize representative patterns of a single respiratory trace. The six most informative features were subsequently extracted using a stepwise feature selection approach. The multiple-regression model was trained and tested based on a leave-one-subject-out cross-validation. The predicted quantitative improvements in PET imaging achieved an accuracy higher than 90% using a criterion with a dynamic error-tolerance range for SUV(peak) values. The results of this study suggest that our prediction framework could be applied to determine which patients would likely benefit from respiratory motion compensation when clinicians quantitatively assess PET/CT for therapy target definition and response assessment.

  7. Respiratory trace feature analysis for the prediction of respiratory-gated PET quantification

    NASA Astrophysics Data System (ADS)

    Wang, Shouyi; Bowen, Stephen R.; Chaovalitwongse, W. Art; Sandison, George A.; Grabowski, Thomas J.; Kinahan, Paul E.

    2014-02-01

    The benefits of respiratory gating in quantitative PET/CT vary tremendously between individual patients. Respiratory pattern is among many patient-specific characteristics that are thought to play an important role in gating-induced imaging improvements. However, the quantitative relationship between patient-specific characteristics of respiratory pattern and improvements in quantitative accuracy from respiratory-gated PET/CT has not been well established. If such a relationship could be estimated, then patient-specific respiratory patterns could be used to prospectively select appropriate motion compensation during image acquisition on a per-patient basis. This study was undertaken to develop a novel statistical model that predicts quantitative changes in PET/CT imaging due to respiratory gating. Free-breathing static FDG-PET images without gating and respiratory-gated FDG-PET images were collected from 22 lung and liver cancer patients on a PET/CT scanner. PET imaging quality was quantified with peak standardized uptake value (SUVpeak) over lesions of interest. Relative differences in SUVpeak between static and gated PET images were calculated to indicate quantitative imaging changes due to gating. A comprehensive multidimensional extraction of the morphological and statistical characteristics of respiratory patterns was conducted, resulting in 16 features that characterize representative patterns of a single respiratory trace. The six most informative features were subsequently extracted using a stepwise feature selection approach. The multiple-regression model was trained and tested based on a leave-one-subject-out cross-validation. The predicted quantitative improvements in PET imaging achieved an accuracy higher than 90% using a criterion with a dynamic error-tolerance range for SUVpeak values. The results of this study suggest that our prediction framework could be applied to determine which patients would likely benefit from respiratory motion compensation when clinicians quantitatively assess PET/CT for therapy target definition and response assessment.

  8. Patellar segmentation from 3D magnetic resonance images using guided recursive ray-tracing for edge pattern detection

    NASA Astrophysics Data System (ADS)

    Cheng, Ruida; Jackson, Jennifer N.; McCreedy, Evan S.; Gandler, William; Eijkenboom, J. J. F. A.; van Middelkoop, M.; McAuliffe, Matthew J.; Sheehan, Frances T.

    2016-03-01

    The paper presents an automatic segmentation methodology for the patellar bone, based on 3D gradient recalled echo and gradient recalled echo with fat suppression magnetic resonance images. Constricted search space outlines are incorporated into recursive ray-tracing to segment the outer cortical bone. A statistical analysis based on the dependence of information in adjacent slices is used to limit the search in each image to between an outer and inner search region. A section based recursive ray-tracing mechanism is used to skip inner noise regions and detect the edge boundary. The proposed method achieves higher segmentation accuracy (0.23mm) than the current state-of-the-art methods with the average dice similarity coefficient of 96.0% (SD 1.3%) agreement between the auto-segmentation and ground truth surfaces.

  9. A motion-compensated image filter for low-dose fluoroscopy in a real-time tumor-tracking radiotherapy system

    PubMed Central

    Miyamoto, Naoki; Ishikawa, Masayori; Sutherland, Kenneth; Suzuki, Ryusuke; Matsuura, Taeko; Toramatsu, Chie; Takao, Seishin; Nihongi, Hideaki; Shimizu, Shinichi; Umegaki, Kikuo; Shirato, Hiroki

    2015-01-01

    In the real-time tumor-tracking radiotherapy system, a surrogate fiducial marker inserted in or near the tumor is detected by fluoroscopy to realize respiratory-gated radiotherapy. The imaging dose caused by fluoroscopy should be minimized. In this work, an image processing technique is proposed for tracing a moving marker in low-dose imaging. The proposed tracking technique is a combination of a motion-compensated recursive filter and template pattern matching. The proposed image filter can reduce motion artifacts resulting from the recursive process based on the determination of the region of interest for the next frame according to the current marker position in the fluoroscopic images. The effectiveness of the proposed technique and the expected clinical benefit were examined by phantom experimental studies with actual tumor trajectories generated from clinical patient data. It was demonstrated that the marker motion could be traced in low-dose imaging by applying the proposed algorithm with acceptable registration error and high pattern recognition score in all trajectories, although some trajectories were not able to be tracked with the conventional spatial filters or without image filters. The positional accuracy is expected to be kept within ±2 mm. The total computation time required to determine the marker position is a few milliseconds. The proposed image processing technique is applicable for imaging dose reduction. PMID:25129556

  10. Introducing GAMER: A fast and accurate method for ray-tracing galaxies using procedural noise

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Groeneboom, N. E.; Dahle, H., E-mail: nicolaag@astro.uio.no

    2014-03-10

    We developed a novel approach for fast and accurate ray-tracing of galaxies using procedural noise fields. Our method allows for efficient and realistic rendering of synthetic galaxy morphologies, where individual components such as the bulge, disk, stars, and dust can be synthesized in different wavelengths. These components follow empirically motivated overall intensity profiles but contain an additional procedural noise component that gives rise to complex natural patterns that mimic interstellar dust and star-forming regions. These patterns produce more realistic-looking galaxy images than using analytical expressions alone. The method is fully parallelized and creates accurate high- and low- resolution images thatmore » can be used, for example, in codes simulating strong and weak gravitational lensing. In addition to having a user-friendly graphical user interface, the C++ software package GAMER is easy to implement into an existing code.« less

  11. Introducing GAMER: A Fast and Accurate Method for Ray-tracing Galaxies Using Procedural Noise

    NASA Astrophysics Data System (ADS)

    Groeneboom, N. E.; Dahle, H.

    2014-03-01

    We developed a novel approach for fast and accurate ray-tracing of galaxies using procedural noise fields. Our method allows for efficient and realistic rendering of synthetic galaxy morphologies, where individual components such as the bulge, disk, stars, and dust can be synthesized in different wavelengths. These components follow empirically motivated overall intensity profiles but contain an additional procedural noise component that gives rise to complex natural patterns that mimic interstellar dust and star-forming regions. These patterns produce more realistic-looking galaxy images than using analytical expressions alone. The method is fully parallelized and creates accurate high- and low- resolution images that can be used, for example, in codes simulating strong and weak gravitational lensing. In addition to having a user-friendly graphical user interface, the C++ software package GAMER is easy to implement into an existing code.

  12. Estimation of color modification in digital images by CFA pattern change.

    PubMed

    Choi, Chang-Hee; Lee, Hae-Yeoun; Lee, Heung-Kyu

    2013-03-10

    Extensive studies have been carried out for detecting image forgery such as copy-move, re-sampling, blurring, and contrast enhancement. Although color modification is a common forgery technique, there is no reported forensic method for detecting this type of manipulation. In this paper, we propose a novel algorithm for estimating color modification in images acquired from digital cameras when the images are modified. Most commercial digital cameras are equipped with a color filter array (CFA) for acquiring the color information of each pixel. As a result, the images acquired from such digital cameras include a trace from the CFA pattern. This pattern is composed of the basic red green blue (RGB) colors, and it is changed when color modification is carried out on the image. We designed an advanced intermediate value counting method for measuring the change in the CFA pattern and estimating the extent of color modification. The proposed method is verified experimentally by using 10,366 test images. The results confirmed the ability of the proposed method to estimate color modification with high accuracy. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  13. In vivo retinal imaging for fixational eye motion detection using a high-speed digital micromirror device (DMD)-based ophthalmoscope.

    PubMed

    Vienola, Kari V; Damodaran, Mathi; Braaf, Boy; Vermeer, Koenraad A; de Boer, Johannes F

    2018-02-01

    Retinal motion detection with an accuracy of 0.77 arcmin corresponding to 3.7 µm on the retina is demonstrated with a novel digital micromirror device based ophthalmoscope. By generating a confocal image as a reference, eye motion could be measured from consecutively measured subsampled frames. The subsampled frames provide 7.7 millisecond snapshots of the retina without motion artifacts between the image points of the subsampled frame, distributed over the full field of view. An ophthalmoscope pattern projection speed of 130 Hz enabled a motion detection bandwidth of 65 Hz. A model eye with a scanning mirror was built to test the performance of the motion detection algorithm. Furthermore, an in vivo motion trace was obtained from a healthy volunteer. The obtained eye motion trace clearly shows the three main types of fixational eye movements. Lastly, the obtained eye motion trace was used to correct for the eye motion in consecutively obtained subsampled frames to produce an averaged confocal image correct for motion artefacts.

  14. In vivo retinal imaging for fixational eye motion detection using a high-speed digital micromirror device (DMD)-based ophthalmoscope

    PubMed Central

    Vienola, Kari V.; Damodaran, Mathi; Braaf, Boy; Vermeer, Koenraad A.; de Boer, Johannes F.

    2018-01-01

    Retinal motion detection with an accuracy of 0.77 arcmin corresponding to 3.7 µm on the retina is demonstrated with a novel digital micromirror device based ophthalmoscope. By generating a confocal image as a reference, eye motion could be measured from consecutively measured subsampled frames. The subsampled frames provide 7.7 millisecond snapshots of the retina without motion artifacts between the image points of the subsampled frame, distributed over the full field of view. An ophthalmoscope pattern projection speed of 130 Hz enabled a motion detection bandwidth of 65 Hz. A model eye with a scanning mirror was built to test the performance of the motion detection algorithm. Furthermore, an in vivo motion trace was obtained from a healthy volunteer. The obtained eye motion trace clearly shows the three main types of fixational eye movements. Lastly, the obtained eye motion trace was used to correct for the eye motion in consecutively obtained subsampled frames to produce an averaged confocal image correct for motion artefacts. PMID:29552396

  15. A tiger cannot change its stripes: using a three-dimensional model to match images of living tigers and tiger skins.

    PubMed

    Hiby, Lex; Lovell, Phil; Patil, Narendra; Kumar, N Samba; Gopalaswamy, Arjun M; Karanth, K Ullas

    2009-06-23

    The tiger is one of many species in which individuals can be identified by surface patterns. Camera traps can be used to record individual tigers moving over an array of locations and provide data for monitoring and studying populations and devising conservation strategies. We suggest using a combination of algorithms to calculate similarity scores between pattern samples scanned from the images to automate the search for a match to a new image. We show how using a three-dimensional surface model of a tiger to scan the pattern samples allows comparison of images that differ widely in camera angles and body posture. The software, which is free to download, considerably reduces the effort required to maintain an image catalogue and we suggest it could be used to trace the origin of a tiger skin by searching a central database of living tigers' images for matches to an image of the skin.

  16. A tiger cannot change its stripes: using a three-dimensional model to match images of living tigers and tiger skins

    PubMed Central

    Hiby, Lex; Lovell, Phil; Patil, Narendra; Kumar, N. Samba; Gopalaswamy, Arjun M.; Karanth, K. Ullas

    2009-01-01

    The tiger is one of many species in which individuals can be identified by surface patterns. Camera traps can be used to record individual tigers moving over an array of locations and provide data for monitoring and studying populations and devising conservation strategies. We suggest using a combination of algorithms to calculate similarity scores between pattern samples scanned from the images to automate the search for a match to a new image. We show how using a three-dimensional surface model of a tiger to scan the pattern samples allows comparison of images that differ widely in camera angles and body posture. The software, which is free to download, considerably reduces the effort required to maintain an image catalogue and we suggest it could be used to trace the origin of a tiger skin by searching a central database of living tigers' images for matches to an image of the skin. PMID:19324633

  17. FracPaQ: a MATLAB™ toolbox for the quantification of fracture patterns

    NASA Astrophysics Data System (ADS)

    Healy, David; Rizzo, Roberto; Farrell, Natalie; Watkins, Hannah; Cornwell, David; Gomez-Rivas, Enrique; Timms, Nick

    2017-04-01

    The patterns of fractures in deformed rocks are rarely uniform or random. Fracture orientations, sizes, shapes and spatial distributions often exhibit some kind of order. In detail, there may be relationships among the different fracture attributes e.g. small fractures dominated by one orientation, larger fractures by another. These relationships are important because the mechanical (e.g. strength, anisotropy) and transport (e.g. fluids, heat) properties of rock depend on these fracture patterns and fracture attributes. This presentation describes an open source toolbox to quantify fracture patterns, including distributions in fracture attributes and their spatial variation. Software has been developed to quantify fracture patterns from 2-D digital images, such as thin section micrographs, geological maps, outcrop or aerial photographs or satellite images. The toolbox comprises a suite of MATLAB™ scripts based on published quantitative methods for the analysis of fracture attributes: orientations, lengths, intensity, density and connectivity. An estimate of permeability in 2-D is made using a parallel plate model. The software provides an objective and consistent methodology for quantifying fracture patterns and their variations in 2-D across a wide range of length scales. Our current focus for the application of the software is on quantifying crack and fracture patterns in and around fault zones. There is a large body of published work on the quantification of relatively simple joint patterns, but fault zones present a bigger, and arguably more important, challenge. The methods presented are inherently scale independent, and a key task will be to analyse and integrate quantitative fracture pattern data from micro- to macro-scales. New features in this release include multi-scale analyses based on a wavelet method to look for scale transitions, support for multi-colour traces in the input file processed as separate fracture sets, and combining fracture traces from multiple 2-D images to derive the statistically equivalent 3-D fracture pattern expressed as a 2nd rank crack tensor.

  18. Image-based spectroscopy for environmental monitoring

    NASA Astrophysics Data System (ADS)

    Bachmakov, Eduard; Molina, Carolyn; Wynne, Rosalind

    2014-03-01

    An image-processing algorithm for use with a nano-featured spectrometer chemical agent detection configuration is presented. The spectrometer chip acquired from Nano-Optic DevicesTM can reduce the size of the spectrometer down to a coin. The nanospectrometer chip was aligned with a 635nm laser source, objective lenses, and a CCD camera. The images from a nanospectrometer chip were collected and compared to reference spectra. Random background noise contributions were isolated and removed from the diffraction pattern image analysis via a threshold filter. Results are provided for the image-based detection of the diffraction pattern produced by the nanospectrometer. The featured PCF spectrometer has the potential to measure optical absorption spectra in order to detect trace amounts of contaminants. MATLAB tools allow for implementation of intelligent, automatic detection of the relevant sub-patterns in the diffraction patterns and subsequent extraction of the parameters using region-detection algorithms such as the generalized Hough transform, which detects specific shapes within the image. This transform is a method for detecting curves by exploiting the duality between points on a curve and parameters of that curve. By employing this imageprocessing technique, future sensor systems will benefit from new applications such as unsupervised environmental monitoring of air or water quality.

  19. SPOT satellite mapping of Ice Stream B

    NASA Technical Reports Server (NTRS)

    Merry, Carolyn J.

    1993-01-01

    Numerous features of glaciological significance appear on two adjoining SPOT High Resolution Visible (HRV) images that cover the onset region of ice stream B. Many small-scale features, such as crevasses and drift plumes, have been previously observed in aerial photography. Subtle features, such as long flow traces that have not been mapped previously, are also clear in the satellite imagery. Newly discovered features include ladder-like runners and rungs within certain shear margins, flow traces that are parallel to ice flow, unusual crevasse patterns, and flow traces originating within shear margins. An objective of our work is to contribute to an understanding of the genesis of the features observed in satellite imagery. The genetic possibilities for flow traces, other lineations, bands of transverse crevasses, shear margins, mottles, and lumps and warps are described.

  20. Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems

    PubMed Central

    2013-01-01

    This paper presents an original spit-and-combine imaging procedure that enables the complete vectorization of complex root systems grown in rhizotrons. The general principle of the method is to (1) separate the root system into a small number of large pieces to reduce root overlap, (2) scan these pieces one by one, (3) analyze separate images with a root tracing software and (4) combine all tracings into a single vectorized root system. This method generates a rich dataset containing morphological, topological and geometrical information of entire root systems grown in rhizotrons. The utility of the method is illustrated with a detailed architectural analysis of a 20-day old maize root system, coupled with a spatial analysis of water uptake patterns. PMID:23286457

  1. Novel scanning procedure enabling the vectorization of entire rhizotron-grown root systems.

    PubMed

    Lobet, Guillaume; Draye, Xavier

    2013-01-04

    : This paper presents an original spit-and-combine imaging procedure that enables the complete vectorization of complex root systems grown in rhizotrons. The general principle of the method is to (1) separate the root system into a small number of large pieces to reduce root overlap, (2) scan these pieces one by one, (3) analyze separate images with a root tracing software and (4) combine all tracings into a single vectorized root system. This method generates a rich dataset containing morphological, topological and geometrical information of entire root systems grown in rhizotrons. The utility of the method is illustrated with a detailed architectural analysis of a 20-day old maize root system, coupled with a spatial analysis of water uptake patterns.

  2. Decoding individual episodic memory traces in the human hippocampus.

    PubMed

    Chadwick, Martin J; Hassabis, Demis; Weiskopf, Nikolaus; Maguire, Eleanor A

    2010-03-23

    In recent years, multivariate pattern analyses have been performed on functional magnetic resonance imaging (fMRI) data, permitting prediction of mental states from local patterns of blood oxygen-level-dependent (BOLD) signal across voxels. We previously demonstrated that it is possible to predict the position of individuals in a virtual-reality environment from the pattern of activity across voxels in the hippocampus. Although this shows that spatial memories can be decoded, substantially more challenging, and arguably only possible to investigate in humans, is whether it is feasible to predict which complex everyday experience, or episodic memory, a person is recalling. Here we document for the first time that traces of individual rich episodic memories are detectable and distinguishable solely from the pattern of fMRI BOLD signals across voxels in the human hippocampus. In so doing, we uncovered a possible functional topography in the hippocampus, with preferential episodic processing by some hippocampal regions over others. Moreover, our results imply that the neuronal traces of episodic memories are stable (and thus predictable) even over many re-activations. Finally, our data provide further evidence for functional differentiation within the medial temporal lobe, in that we show the hippocampus contains significantly more episodic information than adjacent structures. 2010 Elsevier Ltd. All rights reserved.

  3. Tracing Activity Across the Whole Brain Neural Network with Optogenetic Functional Magnetic Resonance Imaging

    PubMed Central

    Lee, Jin Hyung

    2011-01-01

    Despite the overwhelming need, there has been a relatively large gap in our ability to trace network level activity across the brain. The complex dense wiring of the brain makes it extremely challenging to understand cell-type specific activity and their communication beyond a few synapses. Recent development of the optogenetic functional magnetic resonance imaging (ofMRI) provides a new impetus for the study of brain circuits by enabling causal tracing of activities arising from defined cell types and firing patterns across the whole brain. Brain circuit elements can be selectively triggered based on their genetic identity, cell body location, and/or their axonal projection target with temporal precision while the resulting network response is monitored non-invasively with unprecedented spatial and temporal accuracy. With further studies including technological innovations to bring ofMRI to its full potential, ofMRI is expected to play an important role in our system-level understanding of the brain circuit mechanism. PMID:22046160

  4. Printing line/space patterns on nonplanar substrates using a digital micromirror device-based point-array scanning technique

    NASA Astrophysics Data System (ADS)

    Kuo, Hung-Fei; Kao, Guan-Hsuan; Zhu, Liang-Xiu; Hung, Kuo-Shu; Lin, Yu-Hsin

    2018-02-01

    This study used a digital micromirror device (DMD) to produce point-array patterns and employed a self-developed optical system to define line-and-space patterns on nonplanar substrates. First, field tracing was employed to analyze the aerial images of the lithographic system, which comprised an optical system and the DMD. Multiobjective particle swarm optimization was then applied to determine the spot overlapping rate used. The objective functions were set to minimize linewidth and maximize image log slope, through which the dose of the exposure agent could be effectively controlled and the quality of the nonplanar lithography could be enhanced. Laser beams with 405-nm wavelength were employed as the light source. Silicon substrates coated with photoresist were placed on a nonplanar translation stage. The DMD was used to produce lithographic patterns, during which the parameters were analyzed and optimized. The optimal delay time-sequence combinations were used to scan images of the patterns. Finally, an exposure linewidth of less than 10 μm was successfully achieved using the nonplanar lithographic process.

  5. General fusion approaches for the age determination of latent fingerprint traces: results for 2D and 3D binary pixel feature fusion

    NASA Astrophysics Data System (ADS)

    Merkel, Ronny; Gruhn, Stefan; Dittmann, Jana; Vielhauer, Claus; Bräutigam, Anja

    2012-03-01

    Determining the age of latent fingerprint traces found at crime scenes is an unresolved research issue since decades. Solving this issue could provide criminal investigators with the specific time a fingerprint trace was left on a surface, and therefore would enable them to link potential suspects to the time a crime took place as well as to reconstruct the sequence of events or eliminate irrelevant fingerprints to ensure privacy constraints. Transferring imaging techniques from different application areas, such as 3D image acquisition, surface measurement and chemical analysis to the domain of lifting latent biometric fingerprint traces is an upcoming trend in forensics. Such non-destructive sensor devices might help to solve the challenge of determining the age of a latent fingerprint trace, since it provides the opportunity to create time series and process them using pattern recognition techniques and statistical methods on digitized 2D, 3D and chemical data, rather than classical, contact-based capturing techniques, which alter the fingerprint trace and therefore make continuous scans impossible. In prior work, we have suggested to use a feature called binary pixel, which is a novel approach in the working field of fingerprint age determination. The feature uses a Chromatic White Light (CWL) image sensor to continuously scan a fingerprint trace over time and retrieves a characteristic logarithmic aging tendency for 2D-intensity as well as 3D-topographic images from the sensor. In this paper, we propose to combine such two characteristic aging features with other 2D and 3D features from the domains of surface measurement, microscopy, photography and spectroscopy, to achieve an increase in accuracy and reliability of a potential future age determination scheme. Discussing the feasibility of such variety of sensor devices and possible aging features, we propose a general fusion approach, which might combine promising features to a joint age determination scheme in future. We furthermore demonstrate the feasibility of the introduced approach by exemplary fusing the binary pixel features based on 2D-intensity and 3D-topographic images of the mentioned CWL sensor. We conclude that a formula based age determination approach requires very precise image data, which cannot be achieved at the moment, whereas a machine learning based classification approach seems to be feasible, if an adequate amount of features can be provided.

  6. Wave-current interaction study in the Gulf of Alaska for detection of eddies by synthetic aperture radar

    NASA Technical Reports Server (NTRS)

    Liu, Antony K.; Peng, Chich Y.; Schumacher, James D.

    1994-01-01

    High resolution Esa Remote Sensing Satellite-1 (ERS-1) Synthetic Aperture Radar (SAR) images are used to detect a mesoscale eddy. Such features limit dispersal of pollock larvae and therefore likely influence recruitment of fish in the Gulf of Alaska. During high sea states and high winds, the direct surface signature of the eddy was not clearly visible, but the wave refraction in the eddy area was observed. The rays of the wave field are traced out directly from the SAR image. The ray pattern gives information on the refraction pattern and on the relative variation of the wave energy along a ray through wave current interaction. These observations are simulated by a ray-tracing model which incorporates a surface current field associated with the eddy. The numerical results of the model show that the waves are refracted and diverge in the eddy field with energy density decreasing. The model-data comparison for each ray shows the model predictions are in good agreement with the SAR data.

  7. Image processing and 3D visualization in the interpretation of patterned injury of the skin

    NASA Astrophysics Data System (ADS)

    Oliver, William R.; Altschuler, Bruce R.

    1995-09-01

    The use of image processing is becoming increasingly important in the evaluation of violent crime. While much work has been done in the use of these techniques for forensic purposes outside of forensic pathology, its use in the pathologic examination of wounding has been limited. We are investigating the use of image processing in the analysis of patterned injuries and tissue damage. Our interests are currently concentrated on 1) the use of image processing techniques to aid the investigator in observing and evaluating patterned injuries in photographs, 2) measurement of the 3D shape characteristics of surface lesions, and 3) correlation of patterned injuries with deep tissue injury as a problem in 3D visualization. We are beginning investigations in data-acquisition problems for performing 3D scene reconstructions from the pathology perspective of correlating tissue injury to scene features and trace evidence localization. Our primary tool for correlation of surface injuries with deep tissue injuries has been the comparison of processed surface injury photographs with 3D reconstructions from antemortem CT and MRI data. We have developed a prototype robot for the acquisition of 3D wound and scene data.

  8. Image feature based GPS trace filtering for road network generation and road segmentation

    DOE PAGES

    Yuan, Jiangye; Cheriyadat, Anil M.

    2015-10-19

    We propose a new method to infer road networks from GPS trace data and accurately segment road regions in high-resolution aerial images. Unlike previous efforts that rely on GPS traces alone, we exploit image features to infer road networks from noisy trace data. The inferred road network is used to guide road segmentation. We show that the number of image segments spanned by the traces and the trace orientation validated with image features are important attributes for identifying GPS traces on road regions. Based on filtered traces , we construct road networks and integrate them with image features to segmentmore » road regions. Lastly, our experiments show that the proposed method produces more accurate road networks than the leading method that uses GPS traces alone, and also achieves high accuracy in segmenting road regions even with very noisy GPS data.« less

  9. Image feature based GPS trace filtering for road network generation and road segmentation

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yuan, Jiangye; Cheriyadat, Anil M.

    We propose a new method to infer road networks from GPS trace data and accurately segment road regions in high-resolution aerial images. Unlike previous efforts that rely on GPS traces alone, we exploit image features to infer road networks from noisy trace data. The inferred road network is used to guide road segmentation. We show that the number of image segments spanned by the traces and the trace orientation validated with image features are important attributes for identifying GPS traces on road regions. Based on filtered traces , we construct road networks and integrate them with image features to segmentmore » road regions. Lastly, our experiments show that the proposed method produces more accurate road networks than the leading method that uses GPS traces alone, and also achieves high accuracy in segmenting road regions even with very noisy GPS data.« less

  10. [Virtual reality in video-assisted thoracoscopic lung segmentectomy].

    PubMed

    Onuki, Takamasa

    2009-07-01

    The branching patterns of pulmonary arteries and veins vary greatly in the pulmonary hilar region and are very complicated. We attempted to reconstruct anatomically correct images using a freeware program. After uploading the images to a personal computer, bronchi, pulmonary arteries and veins were traced by moving up and down in the images and the location and thickness of the bronchi and pulmonary vasculture were indicated as different-sized cylinders. Next, based on the resulting numerical data, a 3D image was reconstructed using Metasequoia shareware. The reconstructed images can be manipulated by virtual surgical procedures such as reshaping, cutting and moving. These system would be very helpful in complicated video-assisted thoracic surgery such as lung segmentectomy.

  11. Emotion strengthens high priority memory traces but weakens low priority memory traces

    PubMed Central

    Sakaki, Michiko; Fryer, Kellie; Mather, Mara

    2014-01-01

    When encountering emotional events, memory for those events is typically enhanced. But it has been unclear how emotionally arousing events influence memory for preceding information. Does emotional arousal induce retrograde amnesia or retrograde enhancement? The current study revealed that this depends on the top-down goal relevance of the preceding information. Across three studies, we found that emotional arousal induced by one image facilitated memory for the preceding neutral item when people prioritized that neutral item. In contrast, an emotional image impaired memory for the preceding neutral item when people did not prioritize that neutral item. Emotional arousal elicited by negative and positive pictures both showed this pattern of enhancing or impairing memory for the preceding stimulus depending on its priority. These results indicate that emotional arousal amplifies the effects of top-down priority in memory formation. PMID:24311478

  12. A novel two-dimensional echocardiographic image analysis system using artificial intelligence-learned pattern recognition for rapid automated ejection fraction.

    PubMed

    Cannesson, Maxime; Tanabe, Masaki; Suffoletto, Matthew S; McNamara, Dennis M; Madan, Shobhit; Lacomis, Joan M; Gorcsan, John

    2007-01-16

    We sought to test the hypothesis that a novel 2-dimensional echocardiographic image analysis system using artificial intelligence-learned pattern recognition can rapidly and reproducibly calculate ejection fraction (EF). Echocardiographic EF by manual tracing is time consuming, and visual assessment is inherently subjective. We studied 218 patients (72 female), including 165 with abnormal left ventricular (LV) function. Auto EF incorporated a database trained on >10,000 human EF tracings to automatically locate and track the LV endocardium from routine grayscale digital cineloops and calculate EF in 15 s. Auto EF results were independently compared with manually traced biplane Simpson's rule, visual EF, and magnetic resonance imaging (MRI) in a subset. Auto EF was possible in 200 (92%) of consecutive patients, of which 77% were completely automated and 23% required manual editing. Auto EF correlated well with manual EF (r = 0.98; 6% limits of agreement) and required less time per patient (48 +/- 26 s vs. 102 +/- 21 s; p < 0.01). Auto EF correlated well with visual EF by expert readers (r = 0.96; p < 0.001), but interobserver variability was greater (3.4 +/- 2.9% vs. 9.8 +/- 5.7%, respectively; p < 0.001). Visual EF was less accurate by novice readers (r = 0.82; 19% limits of agreement) and improved with trainee-operated Auto EF (r = 0.96; 7% limits of agreement). Auto EF also correlated with MRI EF (n = 21) (r = 0.95; 12% limits of agreement), but underestimated absolute volumes (r = 0.95; bias of -36 +/- 27 ml overall). Auto EF can automatically calculate EF similarly to results by manual biplane Simpson's rule and MRI, with less variability than visual EF, and has clinical potential.

  13. Scattering images from autocorrelation functions of P-wave seismic velocity images: the case of Tenerife Island (Canary Islands, Spain)

    NASA Astrophysics Data System (ADS)

    García-Yeguas, A.; Sánchez-Alzola, A.; De Siena, L.; Prudencio, J.; Díaz-Moreno, A.; Ibáñez, J. M.

    2018-03-01

    We present a P-wave scattering image of the volcanic structures under Tenerife Island using the autocorrelation functions of P-wave vertical velocity fluctuations. We have applied a cluster analysis to total quality factor attenuation ( {Q}_t^{-1} ) and scattering quality factor attenuation ( {Q}_{PSc}^{-1} ) images to interpret the structures in terms of intrinsic and scattering attenuation variations on a 2D plane, corresponding to a depth of 2000 m, and check the robustness of the scattering imaging. The results show that scattering patterns are similar to total attenuation patterns in the south of the island. There are two main areas where patterns differ: at Cañadas-Teide-Pico Viejo Complex, high total attenuation and average-to-low scattering values are observed. We interpret the difference as induced by intrinsic attenuation. In the Santiago Ridge Zone (SRZ) region, high scattering values correspond to average total attenuation. In our interpretation, the anomaly is induced by an extended scatterer, geometrically related to the surficial traces of Garachico and El Chinyero historical eruptions and the area of highest seismic activity during the 2004-2008 seismic crises.

  14. Novel ray tracing method for stray light suppression from ocean remote sensing measurements.

    PubMed

    Oh, Eunsong; Hong, Jinsuk; Kim, Sug-Whan; Park, Young-Je; Cho, Seong-Ick

    2016-05-16

    We developed a new integrated ray tracing (IRT) technique to analyze the stray light effect in remotely sensed images. Images acquired with the Geostationary Ocean Color Imager show a radiance level discrepancy at the slot boundary, which is suspected to be a stray light effect. To determine its cause, we developed and adjusted a novel in-orbit stray light analysis method, which consists of three simulated phases (source, target, and instrument). Each phase simulation was performed in a way that used ray information generated from the Sun and reaching the instrument detector plane efficiently. This simulation scheme enabled the construction of the real environment from the remote sensing data, with a focus on realistic phenomena. In the results, even in a cloud-free environment, a background stray light pattern was identified at the bottom of each slot. Variations in the stray light effect and its pattern according to bright target movement were simulated, with a maximum stray light ratio of 8.5841% in band 2 images. To verify the proposed method and simulation results, we compared the results with the real acquired remotely sensed image. In addition, after correcting for abnormal phenomena in specific cases, we confirmed that the stray light ratio decreased from 2.38% to 1.02% in a band 6 case, and from 1.09% to 0.35% in a band 8 case. IRT-based stray light analysis enabled clear determination of the stray light path and candidates in in-orbit circumstances, and the correction process aided recovery of the radiometric discrepancy.

  15. Dilated contour extraction and component labeling algorithm for object vector representation

    NASA Astrophysics Data System (ADS)

    Skourikhine, Alexei N.

    2005-08-01

    Object boundary extraction from binary images is important for many applications, e.g., image vectorization, automatic interpretation of images containing segmentation results, printed and handwritten documents and drawings, maps, and AutoCAD drawings. Efficient and reliable contour extraction is also important for pattern recognition due to its impact on shape-based object characterization and recognition. The presented contour tracing and component labeling algorithm produces dilated (sub-pixel) contours associated with corresponding regions. The algorithm has the following features: (1) it always produces non-intersecting, non-degenerate contours, including the case of one-pixel wide objects; (2) it associates the outer and inner (i.e., around hole) contours with the corresponding regions during the process of contour tracing in a single pass over the image; (3) it maintains desired connectivity of object regions as specified by 8-neighbor or 4-neighbor connectivity of adjacent pixels; (4) it avoids degenerate regions in both background and foreground; (5) it allows an easy augmentation that will provide information about the containment relations among regions; (6) it has a time complexity that is dominantly linear in the number of contour points. This early component labeling (contour-region association) enables subsequent efficient object-based processing of the image information.

  16. Motion-oriented high speed 3-D measurements by binocular fringe projection using binary aperiodic patterns.

    PubMed

    Feng, Shijie; Chen, Qian; Zuo, Chao; Tao, Tianyang; Hu, Yan; Asundi, Anand

    2017-01-23

    Fringe projection is an extensively used technique for high speed three-dimensional (3-D) measurements of dynamic objects. To precisely retrieve a moving object at pixel level, researchers prefer to project a sequence of fringe images onto its surface. However, the motion often leads to artifacts in reconstructions due to the sequential recording of the set of patterns. In order to reduce the adverse impact of the movement, we present a novel high speed 3-D scanning technique combining the fringe projection and stereo. Firstly, promising measuring speed is achieved by modifying the traditional aperiodic sinusoidal patterns so that the fringe images can be cast at kilohertz with the widely used defocusing strategy. Next, a temporal intensity tracing algorithm is developed to further alleviate the influence of motion by accurately tracing the ideal intensity for stereo matching. Then, a combined cost measure is suggested to robustly estimate the cost for each pixel and lastly a three-step framework of refinement follows not only to eliminate outliers caused by the motion but also to obtain sub-pixel disparity results for 3-D reconstructions. In comparison with the traditional method where the effect of motion is not considered, experimental results show that the reconstruction accuracy for dynamic objects can be improved by an order of magnitude with the proposed method.

  17. A Rotor Tip Vortex Tracing Algorithm for Image Post-Processing

    NASA Technical Reports Server (NTRS)

    Overmeyer, Austin D.

    2015-01-01

    A neurite tracing algorithm, originally developed for medical image processing, was used to trace the location of the rotor tip vortex in density gradient flow visualization images. The tracing algorithm was applied to several representative test images to form case studies. The accuracy of the tracing algorithm was compared to two current methods including a manual point and click method and a cross-correlation template method. It is shown that the neurite tracing algorithm can reduce the post-processing time to trace the vortex by a factor of 10 to 15 without compromising the accuracy of the tip vortex location compared to other methods presented in literature.

  18. Semi-automatic mapping for identifying complex geobodies in seismic images

    NASA Astrophysics Data System (ADS)

    Domínguez-C, Raymundo; Romero-Salcedo, Manuel; Velasquillo-Martínez, Luis G.; Shemeretov, Leonid

    2017-03-01

    Seismic images are composed of positive and negative seismic wave traces with different amplitudes (Robein 2010 Seismic Imaging: A Review of the Techniques, their Principles, Merits and Limitations (Houten: EAGE)). The association of these amplitudes together with a color palette forms complex visual patterns. The color intensity of such patterns is directly related to impedance contrasts: the higher the contrast, the higher the color intensity. Generally speaking, low impedance contrasts are depicted with low tone colors, creating zones with different patterns whose features are not evident for a 3D automated mapping option available on commercial software. In this work, a workflow for a semi-automatic mapping of seismic images focused on those areas with low-intensity colored zones that may be associated with geobodies of petroleum interest is proposed. The CIE L*A*B* color space was used to perform the seismic image processing, which helped find small but significant differences between pixel tones. This process generated binary masks that bound color regions to low-intensity colors. The three-dimensional-mask projection allowed the construction of 3D structures for such zones (geobodies). The proposed method was applied to a set of digital images from a seismic cube and tested on four representative study cases. The obtained results are encouraging because interesting geobodies are obtained with a minimum of information.

  19. Memory consolidation by replay of stimulus-specific neural activity.

    PubMed

    Deuker, Lorena; Olligs, Jan; Fell, Juergen; Kranz, Thorsten A; Mormann, Florian; Montag, Christian; Reuter, Martin; Elger, Christian E; Axmacher, Nikolai

    2013-12-04

    Memory consolidation transforms initially labile memory traces into more stable representations. One putative mechanism for consolidation is the reactivation of memory traces after their initial encoding during subsequent sleep or waking state. However, it is still unknown whether consolidation of individual memory contents relies on reactivation of stimulus-specific neural representations in humans. Investigating stimulus-specific representations in humans is particularly difficult, but potentially feasible using multivariate pattern classification analysis (MVPA). Here, we show in healthy human participants that stimulus-specific activation patterns can indeed be identified with MVPA, that these patterns reoccur spontaneously during postlearning resting periods and sleep, and that the frequency of reactivation predicts subsequent memory for individual items. We conducted a paired-associate learning task with items and spatial positions and extracted stimulus-specific activity patterns by MVPA in a simultaneous electroencephalography and functional magnetic resonance imaging (fMRI) study. As a first step, we investigated the amount of fMRI volumes during rest that resembled either one of the items shown before or one of the items shown as a control after the resting period. Reactivations during both awake resting state and sleep predicted subsequent memory. These data are first evidence that spontaneous reactivation of stimulus-specific activity patterns during resting state can be investigated using MVPA. They show that reactivation occurs in humans and is behaviorally relevant for stabilizing memory traces against interference. They move beyond previous studies because replay was investigated on the level of individual stimuli and because reactivations were not evoked by sensory cues but occurred spontaneously.

  20. Integrated editing system for Japanese text and image information "Linernote"

    NASA Astrophysics Data System (ADS)

    Tanaka, Kazuto

    Integrated Japanese text editing system "Linernote" developed by Toyo Industries Co. is explained. The system has been developed on the concept of electronic publishing. It is composed of personal computer NEC PC-9801 VX and other peripherals. Sentence, drawing and image data is inputted and edited under the integrated operating environment in the system and final text is printed out by laser printer. Handling efficiency of time consuming work such as pattern input or page make up has been improved by draft image data indication method on CRT. It is the latest DTP system equipped with three major functions, namly, typesetting for high quality text editing, easy drawing/tracing and high speed image processing.

  1. Placental fetal stem segmentation in a sequence of histology images

    NASA Astrophysics Data System (ADS)

    Athavale, Prashant; Vese, Luminita A.

    2012-02-01

    Recent research in perinatal pathology argues that analyzing properties of the placenta may reveal important information on how certain diseases progress. One important property is the structure of the placental fetal stems. Analysis of the fetal stems in a placenta could be useful in the study and diagnosis of some diseases like autism. To study the fetal stem structure effectively, we need to automatically and accurately track fetal stems through a sequence of digitized hematoxylin and eosin (H&E) stained histology slides. There are many problems in successfully achieving this goal. A few of the problems are: large size of images, misalignment of the consecutive H&E slides, unpredictable inaccuracies of manual tracing, very complicated texture patterns of various tissue types without clear characteristics, just to name a few. In this paper we propose a novel algorithm to achieve automatic tracing of the fetal stem in a sequence of H&E images, based on an inaccurate manual segmentation of a fetal stem in one of the images. This algorithm combines global affine registration, local non-affine registration and a novel 'dynamic' version of the active contours model without edges. We first use global affine image registration of all the images based on displacement, scaling and rotation. This gives us approximate location of the corresponding fetal stem in the image that needs to be traced. We then use the affine registration algorithm "locally" near this location. At this point, we use a fast non-affine registration based on L2-similarity measure and diffusion regularization to get a better location of the fetal stem. Finally, we have to take into account inaccuracies in the initial tracing. This is achieved through a novel dynamic version of the active contours model without edges where the coefficients of the fitting terms are computed iteratively to ensure that we obtain a unique stem in the segmentation. The segmentation thus obtained can then be used as an initial guess to obtain segmentation in the rest of the images in the sequence. This constitutes an important step in the extraction and understanding of the fetal stem vasculature.

  2. Emotion strengthens high-priority memory traces but weakens low-priority memory traces.

    PubMed

    Sakaki, Michiko; Fryer, Kellie; Mather, Mara

    2014-02-01

    When people encounter emotional events, their memory for those events is typically enhanced. But it has been unclear how emotionally arousing events influence memory for preceding information. Does emotional arousal induce retrograde amnesia or retrograde enhancement? The current study revealed that this depends on the top-down goal relevance of the preceding information. Across three studies, we found that emotional arousal induced by one image facilitated memory for the preceding neutral item when people prioritized that neutral item. In contrast, an emotionally arousing image impaired memory for the preceding neutral item when people did not prioritize that neutral item. Emotional arousal elicited by both negative and positive pictures showed this pattern of enhancing or impairing memory for the preceding stimulus depending on its priority. These results indicate that emotional arousal amplifies the effects of top-down priority in memory formation.

  3. Concepts of Cell Lineage in Mammalian Embryos.

    PubMed

    Papaioannou, Virginia E

    2016-01-01

    Cell lineage is the framework for understanding cellular diversity, stability of differentiation, and its relationship to pluripotency. The special condition of in utero development in mammals has presented challenges to developmental biologists in tracing cell lineages but modern imaging and cell marking techniques have allowed the gradual elucidation of lineage relationships. Early experimental embryology approaches had limited resolution and relied of suboptimal cell markers and considerable disturbance to the embryos. Transgenic technology introduced genetic markers, particularly fluorescent proteins that, combined with sophisticated imaging modalities, greatly increase resolution and allow clonal analysis within lineages. The concept of cell lineage has also undergone evolution as it became possible to trace the lineage of cells based not only on their physical location or attributes but also on their gene expression pattern, thus opening up mechanistic lines of investigation into the determinants of cell lineage. © 2016 Elsevier Inc. All rights reserved.

  4. Neuronal Tracing with Magnetic Labels: NMR Imaging Methods, Preliminary Results, and New Optimized Coils.

    NASA Astrophysics Data System (ADS)

    Ghosh, Pratik

    1992-01-01

    The investigations focussed on in vivo NMR imaging studies of magnetic particles with and within neural cells. NMR imaging methods, both Fourier transform and projection reconstruction, were implemented and new protocols were developed to perform "Neuronal Tracing with Magnetic Labels" on small animal brains. Having performed the preliminary experiments with neuronal tracing, new optimized coils and experimental set-up were devised. A novel gradient coil technology along with new rf-coils were implemented, and optimized for future use with small animals in them. A new magnetic labelling procedure was developed that allowed labelling of billions of cells with ultra -small magnetite particles in a short time. The relationships among the viability of such cells, the amount of label and the contrast in the images were studied as quantitatively as possible. Intracerebral grafting of magnetite labelled fetal rat brain cells made it possible for the first time to attempt monitoring in vivo the survival, differentiation, and possible migration of both host and grafted cells in the host rat brain. This constituted the early steps toward future experiments that may lead to the monitoring of human brain grafts of fetal brain cells. Preliminary experiments with direct injection of horse radish peroxidase-conjugated magnetite particles into neurons, followed by NMR imaging, revealed a possible non-invasive alternative, allowing serial study of the dynamic transport pattern of tracers in single living animals. New gradient coils were built by using parallel solid-conductor ribbon cables that could be wrapped easily and quickly. Rapid rise times provided by these coils allowed implementation of fast imaging methods. Optimized rf-coil circuit development made it possible to understand better the sample-coil properties and the associated trade -offs in cases of small but conducting samples.

  5. Astigmatism correction of a non-imaging double spectrometer fitted with a 2D array detector

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yaney, P.P.; Ernst, S.L.; Blackshire, J.

    1992-12-01

    A SPEX 1401 double spectrometer was adapted for a liquid nitrogen cooled CCD detector to permit both spectral and spatial analysis of ceramic specimens in a laser Raman microprobe system. The exit image of the spectrometer suffers from astigmatism due to off-axis spherical mirrors. A cylindrical lens was added before the CCD to correct for the astigmatism. The spectrometer and several lenses were modeled using an optical ray tracing program to characterize the astigmatism and to optimize the locations of the lens and the detector. The astigmatism and the spot pattern sizes determined by the model were in good agreementmore » with he observed performance of the modified spectrometer-detector system. Typical spot patterns fell within the 23 {mu}m square pixel size.« less

  6. The Pasamonte unequilibrated eucrite: Pyroxene REE systematic and major-, minor-, and trace-element zoning. [Abstract only

    NASA Technical Reports Server (NTRS)

    Pun, A.; Papike, J. J.

    1994-01-01

    We are evaluating the trace-element concentrations in the pyroxenes of Pasamonte. Pasamonte is a characteristic member of the main group eucrites, and has recently been redescribed as a polymict eucrite. Our Pasamonte sample contained eucritic clasts with textures ranging from subophitic to moderately coarse-grained. This study concentrates on pyroxenes from an unequilibrated, coarse-grained eucrite clast. Major-, minor-, and trace-element analyses were measured for zoned pyroxenes in the eucritic clast of Pasamonte. The major- and minor-element zoning traverses were measured using the JEOL 733 electron probe with an Oxford-Link imaging/analysis system. Complemenatry trace elements were then measured for the core and rim of each of the grains by SIMS. The trace elements analyzed consisted of eight REE, Sr, Y, and Zr. These analyses were performed on a Cameca 4f ion probe. The results of the CI chondrite normalized (average CI trace-element analyses for several grains and the major- and minor-element zoning patterns from a single pyroxene grain are given. The Eu abundance in the cores of the pyroxenes represents the detection limit and therefore the (-Eu) anomaly is a minimum. Major- and minor-element patterns are typical for igneous zoning. Pyroxene cores are Mg enriched, whereas the rims are enriched in Fe and Ca. Also, Ti and Mn are found to increase, while Cr and Al generally decrease in core-to-rim traverses. The cores of the pyroxenes are more depleted in the Rare Earth Elements (REE) than the rims. Using the minor- and trace-element concentrations of bulk Pasamonte and the minor- and trace-element concentrations from the cores of the pyroxenes in Pasamonte measured in this study, we calculated partition coefficients between pyroxene and melt. This calculation assumes that bulk Pasamonte is representative of a melt composition.

  7. SU-D-9A-01: Listmode-Driven Optimal Gating (OG) Respiratory Motion Management: Potential Impact On Quantitative PET Imaging

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lee, K; Hristov, D

    2014-06-01

    Purpose: To evaluate the potential impact of listmode-driven amplitude based optimal gating (OG) respiratory motion management technique on quantitative PET imaging. Methods: During the PET acquisitions, an optical camera tracked and recorded the motion of a tool placed on top of patients' torso. PET event data were utilized to detect and derive a motion signal that is directly coupled with a specific internal organ. A radioactivity-trace was generated from listmode data by accumulating all prompt counts in temporal bins matching the sampling rate of the external tracking device. Decay correction for 18F was performed. The image reconstructions using OG respiratorymore » motion management technique that uses 35% of total radioactivity counts within limited motion amplitudes were performed with external motion and radioactivity traces separately with ordered subset expectation maximization (OSEM) with 2 iterations and 21 subsets. Standard uptake values (SUVs) in a tumor region were calculated to measure the effect of using radioactivity trace for motion compensation. Motion-blurred 3D static PET image was also reconstructed with all counts and the SUVs derived from OG images were compared with SUVs from 3D images. Results: A 5.7 % increase of the maximum SUV in the lesion was found for optimal gating image reconstruction with radioactivity trace when compared to a static 3D image. The mean and maximum SUVs on the image that was reconstructed with radioactivity trace were found comparable (0.4 % and 4.5 % increase, respectively) to the values derived from the image that was reconstructed with external trace. Conclusion: The image reconstructed using radioactivity trace showed that the blurring due to the motion was reduced with impact on derived SUVs. The resolution and contrast of the images reconstructed with radioactivity trace were comparable to the resolution and contrast of the images reconstructed with external respiratory traces. Research supported by Siemens.« less

  8. Messier 101 Single Orbit Exposure

    NASA Image and Video Library

    2003-07-25

    This single orbit exposure, ultraviolet color image of Messier 101 was taken by NASA's Galaxy Evolution Explorer on June 20, 2003. Messier 101 is a large spiral galaxy located 20 million light-years from Earth. This image is a short and medium "exposure" picture of the evolution of star formation in a spiral galaxy. The far ultraviolet emission detects the younger stars as concentrated in tight spiral arms, while the near ultraviolet emission, which traces stars living for more than 100 million years, displays the movement of the spiral pattern over a 100 million year period. The red stars in the foreground of the image are Milky Way stars. http://photojournal.jpl.nasa.gov/catalog/PIA04632

  9. Fast 3D shape measurements with reduced motion artifacts

    NASA Astrophysics Data System (ADS)

    Feng, Shijie; Zuo, Chao; Chen, Qian; Gu, Guohua

    2017-10-01

    Fringe projection is an extensively used technique for high speed three-dimensional (3D) measurements of dynamic objects. However, the motion often leads to artifacts in reconstructions due to the sequential recording of the set of patterns. In order to reduce the adverse impact of the movement, we present a novel high speed 3D scanning technique combining the fringe projection and stereo. Firstly, promising measuring speed is achieved by modifying the traditional aperiodic sinusoidal patterns so that the fringe images can be cast at kilohertz with the widely used defocusing strategy. Next, a temporal intensity tracing algorithm is developed to further alleviate the influence of motion by accurately tracing the ideal intensity for stereo matching. Then, a combined cost measure is suggested to robustly estimate the cost for each pixel. In comparison with the traditional method where the effect of motion is not considered, experimental results show that the reconstruction accuracy for dynamic objects can be improved by an order of magnitude with the proposed method.

  10. Comparing 2-[18F]fluoro-2-deoxy-D-glucose and [68Ga]gallium-citrate translocation in Arabidopsis thaliana.

    PubMed

    Fatangare, Amol; Gebhardt, Peter; Saluz, Hanspeter; Svatoš, Aleš

    2014-10-01

    2-[(18)F]fluoro-2-deoxy-D-glucose ((18)FDG) is a glucose surrogate commonly used in clinical or animal imaging but rarely in plant imaging to trace glucose metabolism. Recently, (18)FDG has been employed in plant imaging for studying photoassimilate translocation and glycoside biosynthesis. There is growing evidence that (18)FDG could be used as a tracer in plant imaging studies to trace sugar dynamics. However, to confirm this hypothesis, it was necessary to show that the observed (18)FDG distribution in an intact plant is an outcome of the chemical nature of the introduced radiotracer and not of the plant vascular architecture or radiotracer introduction method. In the present work, we fed (18)FDG and [(68)Ga]gallium-citrate ((68)Ga-citrate) solution through mature Arabidopsis thaliana leaf and monitored subsequent radioactivity distribution using positron autoradiography. The possible route of radioactivity translocation was elucidated through stem-girdling experiments. We also employed a bi-functional positron emission tomography/computed tomography (PET/CT) modality to capture (18)FDG radiotracer dynamics in one of the plants in order to assess applicability of PET/CT for 4-D imaging in an intact plant. Autoradiography results showed that [(18)F] radioactivity accumulated mostly in roots and young growing parts such as the shoot apex, which are known to act as sinks for photoassimilate. [(18)F] radioactivity translocation, in this case, occurred mainly via phloem. PET/CT results corroborated with autoradiography. [(68)Ga] radioactivity, on the other hand, was mainly translocated to neighboring leaves and its translocation occurred via both xylem and phloem. The radioactivity distribution pattern and translocation route observed after (18)FDG feeding is markedly different from that of (68)Ga-citrate. [(18)F] radioactivity distribution pattern in an intact plant is found similar to the typical distribution pattern of photoassimilates. Despite its limitations in quantification and resolution, PET/CT could be a useful tool to elucidate in vivo dynamics of [(18)F] radioactivity in intact plants. Copyright © 2014 Elsevier Inc. All rights reserved.

  11. Coupling of Coastal Zone Color Scanner data to a physical-biological model of the southeastern U.S. continental shelf ecosystem. I - CZCS data description and Lagrangian particle tracing experiments. II - An Eulerian model. III - Nutrient and phytoplankton fluxes and CZCS data assimilation

    NASA Technical Reports Server (NTRS)

    Ishizaka, Joji

    1990-01-01

    Surface phytoplankton biomass of the southeastern U.S. continental shelf area is discussed based on coastal zone color scanner (CZCS) images obtained in April 1980. Data of chlorophyll distributions are analyzed in conjunction with concurrent flow and temperature fields. Lagrangian particle tracing experiments show that the particles move consistently with the evolution of the chlorophyll patterns. A four-component physical-biological model for a horizontal plane at a nominal depth of 17 m is presented. Model simulations using various physical-biological dynamics and boundary conditions show that the variability of chlorophyll distributions is controlled by horizontal advection. Phytoplankton and nutrient fluxes, calculated using the model, show considerable variability with time. The chlorophyll distributions obtained from the CZCS images are assimilated into the model to improve the phytoplankton flux estimates.

  12. Influence of sample pool on interference pattern in defocused interferometric particle imaging.

    PubMed

    Zhang, Hongxia; Zhou, Ye; Liu, Jing; Jia, Dagong; Liu, Tiegen

    2017-04-01

    Particles widely exist in various fields. In practical experiments, sometimes it is necessary to dissolve particles in water in a sample pool. This article proposes two typical layouts of the sample pool in defocused interferometric particle imaging (IPI). Layout I is the sample pool surface perpendicular to the incident light and layout II is the sample pool surface perpendicular to the scattered light. For layout I, the scattered light of the particles does not keep symmetric at the meridional and sagittal planes after being refracted by the sample pool surface, and elliptical interference patterns are formed at the defocused IPI image plane. But for layout II, the scattered light keeps symmetric after being refracted, and circular interference patterns are formed. Aimed at the two sample pool layouts, the ray-tracing software ZEMAX was used to simulate the spot shape of particles at different defocus distances. Furthermore, its effect on the ellipticity of the interference pattern with the tilt angle of the sample pool is analyzed. The relative error of the axis ratio for layout I does not exceed 9.2% at different defocus distances. The experimental results have good agreement with the theoretical analyses, and it indicates that layout II is more reasonable for the IPI system.

  13. Influence of sample pool on interference pattern in defocused interferometric particle imaging

    NASA Astrophysics Data System (ADS)

    Zhang, Hongxia; Zhou, Ye; Liu, Jing; Jia, Dagong; Liu, Tiegen

    2017-04-01

    Particles widely exist in various fields. In practical experiments, sometimes it is necessary to dissolve particles in water in a sample pool. This article proposes two typical layouts of the sample pool in defocused interferometric particle imaging (IPI). Layout I is the sample pool surface perpendicular to the incident light and layout II is the sample pool surface perpendicular to the scattered light. For layout I, the scattered light of the particles does not keep symmetric at the meridional and sagittal planes after being refracted by the sample pool surface, and elliptical interference patterns are formed at the defocused IPI image plane. But for layout II, the scattered light keeps symmetric after being refracted, and circular interference patterns are formed. Aimed at the two sample pool layouts, the ray-tracing software ZEMAX was used to simulate the spot shape of particles at different defocus distances. Furthermore, its effect on the ellipticity of the interference pattern with the tilt angle of the sample pool is analyzed. The relative error of the axis ratio for layout I does not exceed 9.2% at different defocus distances. The experimental results have good agreement with the theoretical analyses, and it indicates that layout II is more reasonable for the IPI system.

  14. Diagenesis of fossil coral skeletons: Correlation between trace elements, textures, and 234U /238U

    NASA Astrophysics Data System (ADS)

    Bar-Matthews, M.; Wasserburg, G. J.; Chen, J. H.

    1993-01-01

    A comparative study of Pleistocene fossil coral skeletons and of modern coral skeletons was carried out using petrographie and trace element analyses on a suite of Pleistocene samples that had previously been studied for 234U, 230Th, and U- 230Th ages ( CHEN et al. 1991). Evidence of a range of diagenetic changes can be recognized by optical (OM) and scanning electron microscopy (SEM). The normal texture exhibited by modern corals under OM consists of fine needles of aragonite forming a radial-fibrous pattern around a central dark line (center of calcification). This pattern can also be seen in many fossil corals. In most cases, the central dark line partially disappears during diagenesis, the radialfibrous pattern is obscured, and there is a distinct coarsening of the radial fabric of aragonite to unoriented platy or equant aragonite crystals. SEM images show diagenetic textures ranging from dense structureless images of the coralline matrix, with sharp boundaries at the septa walls, to the development of (1) a patchy distribution of dissolution micropores partially filled with aragonite fibers in the matrix, (2)aragonite needles coming from selvages in the septa walls which radiate into the septa voids. Using an electron microprobe and SEM, concentrations of Na, S, Sr, and Mg were measured. No other trace elements were detected. Na, S, and Mg contents of the matrix, the fibrous micropores, and radiating needles are highly variable and well correlated. High concentrations of Na, S, and Mg were found in modern living corals with lower concentrations in fossil corals and fibrous micropores, and the lowest value in the radiating needles. The reason for the correlations of Na, S, and Mg and crystal chemistry and the response to diagenesis of these trace elements is not understood. The average concentrations of Na, S, and Mg for each sample, when plotted against the whole coral initial δ 234U, are generally correlated ( CHEN et al., 1991). As all these diagenetic changes involve the recrystallization and deposition of aragonite, we infer that the geologic site of diagenesis both for forming the secondary aragonitic phases and for the enhancement of the 234U content in the fossil corals was the marine environment. It is possible that the textural and Na, S, and Mg trace element contents of fossil corals be used to ascertain the reliability of fossil coral skeletons for U- 230Th dating. The basic problem of identifying a priori unaltered coral skeletons for 230Th dating is not yet resolved.

  15. Efficient content-based low-altitude images correlated network and strips reconstruction

    NASA Astrophysics Data System (ADS)

    He, Haiqing; You, Qi; Chen, Xiaoyong

    2017-01-01

    The manual intervention method is widely used to reconstruct strips for further aerial triangulation in low-altitude photogrammetry. Clearly the method for fully automatic photogrammetric data processing is not an expected way. In this paper, we explore a content-based approach without manual intervention or external information for strips reconstruction. Feature descriptors in the local spatial patterns are extracted by SIFT to construct vocabulary tree, in which these features are encoded in terms of TF-IDF numerical statistical algorithm to generate new representation for each low-altitude image. Then images correlated network is reconstructed by similarity measure, image matching and geometric graph theory. Finally, strips are reconstructed automatically by tracing straight lines and growing adjacent images gradually. Experimental results show that the proposed approach is highly effective in automatically rearranging strips of lowaltitude images and can provide rough relative orientation for further aerial triangulation.

  16. Benchmarking contactless acquisition sensor reproducibility for latent fingerprint trace evidence

    NASA Astrophysics Data System (ADS)

    Hildebrandt, Mario; Dittmann, Jana

    2015-03-01

    Optical, nano-meter range, contactless, non-destructive sensor devices are promising acquisition techniques in crime scene trace forensics, e.g. for digitizing latent fingerprint traces. Before new approaches are introduced in crime investigations, innovations need to be positively tested and quality ensured. In this paper we investigate sensor reproducibility by studying different scans from four sensors: two chromatic white light sensors (CWL600/CWL1mm), one confocal laser scanning microscope, and one NIR/VIS/UV reflection spectrometer. Firstly, we perform an intra-sensor reproducibility testing for CWL600 with a privacy conform test set of artificial-sweat printed, computer generated fingerprints. We use 24 different fingerprint patterns as original samples (printing samples/templates) for printing with artificial sweat (physical trace samples) and their acquisition with contactless sensory resulting in 96 sensor images, called scan or acquired samples. The second test set for inter-sensor reproducibility assessment consists of the first three patterns from the first test set, acquired in two consecutive scans using each device. We suggest using a simple feature space set in spatial and frequency domain known from signal processing and test its suitability for six different classifiers classifying scan data into small differences (reproducible) and large differences (non-reproducible). Furthermore, we suggest comparing the classification results with biometric verification scores (calculated with NBIS, with threshold of 40) as biometric reproducibility score. The Bagging classifier is nearly for all cases the most reliable classifier in our experiments and the results are also confirmed with the biometric matching rates.

  17. FracPaQ: a MATLAB™ Toolbox for the Quantification of Fracture Patterns

    NASA Astrophysics Data System (ADS)

    Healy, D.; Rizzo, R. E.; Cornwell, D. G.; Timms, N.; Farrell, N. J.; Watkins, H.; Gomez-Rivas, E.; Smith, M.

    2016-12-01

    The patterns of fractures in deformed rocks are rarely uniform or random. Fracture orientations, sizes, shapes and spatial distributions often exhibit some kind of order. In detail, there may be relationships among the different fracture attributes e.g. small fractures dominated by one orientation, larger fractures by another. These relationships are important because the mechanical (e.g. strength, anisotropy) and transport (e.g. fluids, heat) properties of rock depend on these fracture patterns and fracture attributes. This presentation describes an open source toolbox to quantify fracture patterns, including distributions in fracture attributes and their spatial variation. Software has been developed to quantify fracture patterns from 2-D digital images, such as thin section micrographs, geological maps, outcrop or aerial photographs or satellite images. The toolbox comprises a suite of MATLAB™ scripts based on published quantitative methods for the analysis of fracture attributes: orientations, lengths, intensity, density and connectivity. An estimate of permeability in 2-D is made using a parallel plate model. The software provides an objective and consistent methodology for quantifying fracture patterns and their variations in 2-D across a wide range of length scales. Our current focus for the application of the software is on quantifying the fracture patterns in and around fault zones. There is a large body of published work on the quantification of relatively simple joint patterns, but fault zones present a bigger, and arguably more important, challenge. The method presented is inherently scale independent, and a key task will be to analyse and integrate quantitative fracture pattern data from micro- to macro-scales. Planned future releases will incorporate multi-scale analyses based on a wavelet method to look for scale transitions, and combining fracture traces from multiple 2-D images to derive the statistically equivalent 3-D fracture pattern.

  18. Interpreting support vector machine models for multivariate group wise analysis in neuroimaging

    PubMed Central

    Gaonkar, Bilwaj; Shinohara, Russell T; Davatzikos, Christos

    2015-01-01

    Machine learning based classification algorithms like support vector machines (SVMs) have shown great promise for turning a high dimensional neuroimaging data into clinically useful decision criteria. However, tracing imaging based patterns that contribute significantly to classifier decisions remains an open problem. This is an issue of critical importance in imaging studies seeking to determine which anatomical or physiological imaging features contribute to the classifier’s decision, thereby allowing users to critically evaluate the findings of such machine learning methods and to understand disease mechanisms. The majority of published work addresses the question of statistical inference for support vector classification using permutation tests based on SVM weight vectors. Such permutation testing ignores the SVM margin, which is critical in SVM theory. In this work we emphasize the use of a statistic that explicitly accounts for the SVM margin and show that the null distributions associated with this statistic are asymptotically normal. Further, our experiments show that this statistic is a lot less conservative as compared to weight based permutation tests and yet specific enough to tease out multivariate patterns in the data. Thus, we can better understand the multivariate patterns that the SVM uses for neuroimaging based classification. PMID:26210913

  19. Ray Tracing with Virtual Objects.

    ERIC Educational Resources Information Center

    Leinoff, Stuart

    1991-01-01

    Introduces the method of ray tracing to analyze the refraction or reflection of real or virtual images from multiple optical devices. Discusses ray-tracing techniques for locating images using convex and concave lenses or mirrors. (MDH)

  20. Effect of Ground Patterns Size on FM-Band Cross-Talks between Two Parallel Signal Traces of Printed Circuit Boards for Vehicles

    NASA Astrophysics Data System (ADS)

    Iida, Michihira; Maeno, Tsuyoshi; Fujiwara, Osamu

    It is well known that electromagnetic disturbances in vehicle-mounted radios are mainly caused by conducted noise currents flowing through wiring-harnesses from vehicle-mounted printed circuit boards (PCBs) with common ground patterns containing slits. To suppress the noise currents outflow from PCBs of these kinds, we previously measured noise currents outflow from simple two-layer PCBs having two parallel signal traces and different ground patterns with/without slits to reveal that making slits with open ends on the ground patterns in parallel with the traces can reduce the conducted noise currents. In the present study, with FDTD simulation, we investigated reduction effects of ground patterns size on the FM-band cross-talk noise levels between two parallel signal traces, by using four types of simple PCB models having different ground patterns formed in different numbers but containing the same planar dimension slits parallel to the traces, in addition to two types of PCB models with different ground patterns divided into two parts parallel to the traces. As a result, we found that the cross-talk noise currents for the above six types of PCBs decrease by 6.9-8.5dB compared to the PCB which has a plain ground with no slits. From this study, we got the finding that the contributing factor for the above mentioned cross-talk reduction relies on the reduction of mutual inductance between the two parallel traces. In addition, in case of this study, it is interesting to note that the noise currents outflow from PCBs can rather be suppressed when the size of the return ground of each signal trace is small.

  1. Laser Engineered Graphene Paper for Mass Spectrometry Imaging

    PubMed Central

    Qian, Kun; Zhou, Liang; Liu, Jian; Yang, Jie; Xu, Hongyi; Yu, Meihua; Nouwens, Amanda; Zou, Jin; Monteiro, Michael J.; Yu, Chengzhong

    2013-01-01

    A pulsed laser engineering approach is developed to prepare novel functional graphene paper with graphitic nanospheres homogeneously decorated on the surface and the superior performance of engineered paper is revealed in matrix-free mass spectrometry (MS) detection and imaging. We demonstrate that the stability of graphene paper under intense irradiation can be dramatically increased through a designed laser engineering process by forming densely packed graphitic nanospheres on the paper surface. Moreover, the surface hydrophobicity is enhanced and electric conductivity is improved. The engineered graphene paper can image the invisible micro-patterns of trace amount molecules and increases the detection limit towards diverse molecules by over two orders of magnitude compared to the pristine graphene paper and commercial products in MS analysis. PMID:23475267

  2. Tissue Doppler Imaging in the evaluation of abdominal aortic pulsatility: a useful tool for the neonatologist.

    PubMed

    Valerio, Enrico; Grison, Alessandra; Capretta, Anna; Golin, Rosanna; Ferrarese, Paola; Bellettato, Massimo

    2017-03-01

    Sonographic cardiac evaluation of newborns with suspected aortic coarctation (AoC) should tend to demonstrate a good phasic and pulsatile flow and the absence of pressure gradient along a normally conformed aortic arch from the modified left parasternal and suprasternal echocardiographic views; these findings, however, may not necessarily rule out a more distal coarctation in the descending aorta. For this reason, the sonographic exam of newborns with suspected AoC should always include a Doppler evaluation of abdominal aortic blood flow from the subcostal view. Occasionally, however, a clearly pulsatile Doppler flow trace in abdominal aorta may be difficult to obtain due to the bad insonation angle existing between the probe and the vessel. In such suboptimal ultrasonic alignment situation, the use of Tissue Doppler Imaging instead of classic Doppler flow imaging may reveal a preserved aortic pulsatility by sampling the aortic wall motion induced by normal flow. We propose to take advantage of the TDI pattern as a surrogate of a normal pulsatile Doppler flow trace in abdominal aorta when the latter is difficult to obtain due to malalignment with the insonated vessel.

  3. Size Effect of Ground Patterns on FM-Band Cross-Talks between Two Parallel Signal Traces of Printed Circuit Boards for Vehicles

    NASA Astrophysics Data System (ADS)

    Iida, Michihira; Maeno, Tsuyoshi; Wang, Jianqing; Fujiwara, Osamu

    Electromagnetic disturbances in vehicle-mounted radios are mainly caused by conducted noise currents flowing through wiring-harnesses from vehicle-mounted printed circuit boards (PCBs) with common slitting ground patterns. To suppress these kinds of noise currents, we previously measured them for simple two-layer PCBs with two parallel signal traces and slitting or non-slitting ground patterns, and then investigated by the FDTD simulation the reduction characteristics of the FM-band cross-talk noise levels between two parallel signal traces on six simple PCB models having different slitting ground or different divided ground patterns parallel to the traces. As a result, we found that the contributory factor for the FM-band cross-talk reduction is the reduction of mutual inductance between the two parallel traces, and also the noise currents from PCBs can rather be suppressed even if the size of the return ground becomes small. In this study, to investigate this finding, we further simulated the frequency characteristics of cross-talk reduction for additional six simple PCB models with different dividing dimensions ground patterns parallel to the traces, which revealed an interesting phenomenon that cross-talk reduction characteristics do not always decrease with increasing the width between the divided ground patterns.

  4. Signatures of Moving Magnetic Features in and above the Photosphere

    NASA Astrophysics Data System (ADS)

    Hagenaar, H.; Shine, R.; Ryutova, M.; Dalda, A. S.

    2012-08-01

    Hinode/SOT observations of NOAA AR 10933 from 2007 Jan 4 16:14 UT - Jan 6 22:20 UT are used to study MMFs (moving magnetic features) in the periphery of the region's large sunspot and the surrounding moat. The data consist of a nearly continuous set of Fe 6302 Å Stokes V images with sets of G band and Ca II H filtergrams at various cadences, FOV's, and resolutions plus some SpectroPolarimeter (SP) scans. We also used TRACE images in 171 Å to follow any possible signatures at higher temperatures. We applied automatic object recognition and tracking to the MMFs as seen in the Fe 6302 Å Stokes V images. An SP scan was used to determine the line profiles for several paths. Reliable inversions have not yet been done, but we find a few locations of possible supersonic downflows from the Stokes IQUV line profiles. The population of MMFs on the East side of the sunspot is much higher than on the opposite side, mostly involving a large number of mixed polarity MMFs. Consequently, the chromosphere shows strongly enhanced brightenings with a clear pattern: enhanced brightenings in Ca H outline the locations where opposite polarity MMFs meet. This activity does not prevent formation of active low lying “closed” loops at coronal temperatures seen in the TRACE 171 Å line. The other side, with fewer MMFs, shows a pattern that we found earlier: regions with an MMF deficiency show long living “open” coronal loops. This work was supported by NASA contract NNM07AA01C.

  5. Slit Effect of Common Ground Patterns in Affecting Cross-Talk Noise between Two Parallel Signal Traces on Printed Circuit Boards

    NASA Astrophysics Data System (ADS)

    Maeno, Tsuyoshi; Sakurai, Yukihiko; Unou, Takanori; Ichikawa, Kouji; Fujiwara, Osamu

    It is well-known that electromagnetic (EM) disturbances in vehicle-mounted radios are mainly caused by conducted noise currents flowing through wiring-harnesses from vehicle-mounted printed circuit boards (PCBs) with common ground patterns with slits. To evaluate the noise current outflows from the PCBs of this kind, we previously measured noise current outflows from four types of simple three-layer PCBs having two perpendicular signal traces and different ground patterns with/without slits, and showed that slits on a ground pattern allow conducted noise currents to flow out from PCBs, while the levels for the symmetric slits ground type are smaller compared to the case for two asymmetric slits ground types. In the present study, to further investigate the above finding, we fabricated six types of simple two-layer PCBs having two parallel signal traces and different ground patterns with/without slits, and measured the cross-talk noise between the traces. As a result, we found that the ground patterns with the slits perpendicular to the traces increase the cross-talk noise levels, which are larger by 19-42 dB than those for the ground pattern with no slits, while the ground patterns with the slits in parallel with the traces can suppress the noise levels, which are slightly smaller by 2.5-4.5 dB compared to the case for the no-slit ground pattern. These results were confirmed by the FDTD simulation, and were also qualitatively explained from an equivalent bridge circuit model we previously proposed.

  6. Image-guided optimization of the ECG trace in cardiac MRI.

    PubMed

    Barnwell, James D; Klein, J Larry; Stallings, Cliff; Sturm, Amanda; Gillespie, Michael; Fine, Jason; Hyslop, W Brian

    2012-03-01

    Improper electrocardiogram (ECG) lead placement resulting in suboptimal gating may lead to reduced image quality in cardiac magnetic resonance imaging (CMR). A patientspecific systematic technique for rapid optimization of lead placement may improve CMR image quality. A rapid 3 dimensional image of the thorax was used to guide the realignment of ECG leads relative to the cardiac axis of the patient in forty consecutive adult patients. Using our novel approach and consensus reading of pre- and post-correction ECG traces, seventy-three percent of patients had a qualitative improvement in their ECG tracings, and no patient had a decrease in quality of their ECG tracing following the correction technique. Statistically significant improvement was observed independent of gender, body mass index, and cardiac rhythm. This technique provides an efficient option to improve the quality of the ECG tracing in patients who have a poor quality ECG with standard techniques.

  7. Sequential patterns of essential trace elements composition in Gracilaria verrucosa and its generated products

    NASA Astrophysics Data System (ADS)

    Izzati, Munifatul; Haryanti, Sri; Parman, Sarjana

    2018-05-01

    Gracilaria widely known as a source of essential trace elements. However this red seaweeds also has great potential for being developed into commercial products. This study examined the sequential pattern of essential trace elements composition in fresh Gracilaria verrucosa and a selection of its generated products, nemely extracted agar, Gracilaria salt and Gracilaria residue. The sample was collected from a brackish water pond, located in north part Semarang, Central Java. The collected sample was then dried under the sun, and subsequently processed into aformentioned generated products. The Gracilaria salt was obtain by soaking the sun dried Gracilaria overnight in fresh water overnight. The resulted salt solution was then boiled leaving crystal salt. Extracted agar was obtained with alkali agar extraction method. The rest of remaining material was considered as Gracilaria residue. The entire process was repeated 3 times. The compositin of trace elements was examined using ICP-MS Spectrometry. Collected data was then analyzed by ANOVA single factor. Resulting sequential pattern of its essential trace elements composition was compared. A regular table salt was used as controls. Resuts from this study revealed that Gracilaria verrucosa and its all generated products all have similarly patterned the composition of essential trace elements, where Mn>Zn>Cu>Mo. Additionally this pattern is similar to different subspecies of Gracilaria from different location and and different season. However, Gracilaria salt has distinctly different pattern of sequential essential trace elements composition compared to table salt.

  8. The vectorization of a ray tracing program for image generation

    NASA Technical Reports Server (NTRS)

    Plunkett, D. J.; Cychosz, J. M.; Bailey, M. J.

    1984-01-01

    Ray tracing is a widely used method for producing realistic computer generated images. Ray tracing involves firing an imaginary ray from a view point, through a point on an image plane, into a three dimensional scene. The intersections of the ray with the objects in the scene determines what is visible at the point on the image plane. This process must be repeated many times, once for each point (commonly called a pixel) in the image plane. A typical image contains more than a million pixels making this process computationally expensive. A traditional ray tracing program processes one ray at a time. In such a serial approach, as much as ninety percent of the execution time is spent computing the intersection of a ray with the surface in the scene. With the CYBER 205, many rays can be intersected with all the bodies im the scene with a single series of vector operations. Vectorization of this intersection process results in large decreases in computation time. The CADLAB's interest in ray tracing stems from the need to produce realistic images of mechanical parts. A high quality image of a part during the design process can increase the productivity of the designer by helping him visualize the results of his work. To be useful in the design process, these images must be produced in a reasonable amount of time. This discussion will explain how the ray tracing process was vectorized and gives examples of the images obtained.

  9. Network-wide reorganization of procedural memory during NREM sleep revealed by fMRI

    PubMed Central

    Vahdat, Shahabeddin; Fogel, Stuart; Benali, Habib; Doyon, Julien

    2017-01-01

    Sleep is necessary for the optimal consolidation of newly acquired procedural memories. However, the mechanisms by which motor memory traces develop during sleep remain controversial in humans, as this process has been mainly investigated indirectly by comparing pre- and post-sleep conditions. Here, we used functional magnetic resonance imaging and electroencephalography during sleep following motor sequence learning to investigate how newly-formed memory traces evolve dynamically over time. We provide direct evidence for transient reactivation followed by downscaling of functional connectivity in a cortically-dominant pattern formed during learning, as well as gradual reorganization of this representation toward a subcortically-dominant consolidated trace during non-rapid eye movement (NREM) sleep. Importantly, the putamen functional connectivity within the consolidated network during NREM sleep was related to overnight behavioral gains. Our results demonstrate that NREM sleep is necessary for two complementary processes: the restoration and reorganization of newly-learned information during sleep, which underlie human motor memory consolidation. DOI: http://dx.doi.org/10.7554/eLife.24987.001 PMID:28892464

  10. Image recognition of clipped stigma traces in rice seeds

    NASA Astrophysics Data System (ADS)

    Cheng, F.; Ying, YB

    2005-11-01

    The objective of this research is to develop algorithm to recognize clipped stigma traces in rice seeds using image processing. At first, the micro-configuration of clipped stigma traces was observed with electronic scanning microscope. Then images of rice seeds were acquired with a color machine vision system. A digital image-processing algorithm based on morphological operations and Hough transform was developed to inspect the occurrence of clipped stigma traces. Five varieties of Jinyou402, Shanyou10, Zhongyou207, Jiayou and you3207 were evaluated. The algorithm was implemented with all image sets using a Matlab 6.5 procedure. The results showed that the algorithm achieved an average accuracy of 96%. The algorithm was proved to be insensitive to the different rice seed varieties.

  11. Ray Tracing Through Non-Imaging Concentrators

    NASA Astrophysics Data System (ADS)

    Greynolds, Alan W.

    1984-01-01

    A generalized algorithm for tracing rays through both imaging and non-imaging radiation collectors is presented. A computer program based on the algorithm is then applied to analyzing various two-stage Winston concentrators.

  12. Neurient: An Algorithm for Automatic Tracing of Confluent Neuronal Images to Determine Alignment

    PubMed Central

    Mitchel, J.A.; Martin, I.S.

    2013-01-01

    A goal of neural tissue engineering is the development and evaluation of materials that guide neuronal growth and alignment. However, the methods available to quantitatively evaluate the response of neurons to guidance materials are limited and/or expensive, and may require manual tracing to be performed by the researcher. We have developed an open source, automated Matlab-based algorithm, building on previously published methods, to trace and quantify alignment of fluorescent images of neurons in culture. The algorithm is divided into three phases, including computation of a lookup table which contains directional information for each image, location of a set of seed points which may lie along neurite centerlines, and tracing neurites starting with each seed point and indexing into the lookup table. This method was used to obtain quantitative alignment data for complex images of densely cultured neurons. Complete automation of tracing allows for unsupervised processing of large numbers of images. Following image processing with our algorithm, available metrics to quantify neurite alignment include angular histograms, percent of neurite segments in a given direction, and mean neurite angle. The alignment information obtained from traced images can be used to compare the response of neurons to a range of conditions. This tracing algorithm is freely available to the scientific community under the name Neurient, and its implementation in Matlab allows a wide range of researchers to use a standardized, open source method to quantitatively evaluate the alignment of dense neuronal cultures. PMID:23384629

  13. Specialised emission pattern of leaf trace in a late Permian (253 million-years old) conifer

    PubMed Central

    Wei, Hai-Bo; Feng, Zhuo; Yang, Ji-Yuan; Chen, Yu-Xuan; Shen, Jia-Jia; He, Xiao-Yuan

    2015-01-01

    Leaf traces are important structures in higher plants that connect leaves and the stem vascular system. The anatomy and emission pattern of leaf traces are well studied in extant vascular plants, but remain poorly understood in fossil lineages. We quantitatively analysed the leaf traces in the late Permian conifer Ningxiaites specialis from Northwest China based on serial sections through pith, primary and secondary xylems. A complete leaf traces emission pattern of a conifer is presented for the first time from the late Palaeozoic. Three to five monarch leaf traces are grouped in clusters, arranged in a helical phyllotaxis. The leaf traces in each cluster can be divided into upper, middle and lower portions, and initiate at the pith periphery and cross the wood horizontally. The upper leaf trace increases its diameter during the first growth increment and then diminishes completely, which indicates leaf abscission at the end of the first year. The middle trace immediately bifurcates once or twice to form two or three vascular bundles. The lower trace persists as a single bundle during its entire length. The intricate leaf trace dynamics indicates this fossil plant had a novel evolutionary habit by promoting photosynthetic capability for the matured plant. PMID:26198410

  14. 1831: the map that launched the idea of global health.

    PubMed

    Koch, Tom

    2014-08-01

    Today we take for granted the idea of global health, of disease as an international event. Increasingly, we assume as well that the international spread of disease can be traced to human travel patterns as well as to recurring environmental conditions. Perversely, the idea of ‘global health’ and its inverse, global disease, owes little to the three-dimensional imaging of the planet and almost everything to the two-dimensional plane of the map. Here the idea of global disease is traced from its beginnings in the 18th century to its 19th-century introduction in maps of the first cholera pandemic. This global perspective, and the responsibilities it promoted among civil officials, can be seen in modern studies of cancer, influenza and other conditions with both environmental foundations and international presence.

  15. Technique for identifying, tracing, or tracking objects in image data

    DOEpatents

    Anderson, Robert J [Albuquerque, NM; Rothganger, Fredrick [Albuquerque, NM

    2012-08-28

    A technique for computer vision uses a polygon contour to trace an object. The technique includes rendering a polygon contour superimposed over a first frame of image data. The polygon contour is iteratively refined to more accurately trace the object within the first frame after each iteration. The refinement includes computing image energies along lengths of contour lines of the polygon contour and adjusting positions of the contour lines based at least in part on the image energies.

  16. Adult stem cell lineage tracing and deep tissue imaging

    PubMed Central

    Fink, Juergen; Andersson-Rolf, Amanda; Koo, Bon-Kyoung

    2015-01-01

    Lineage tracing is a widely used method for understanding cellular dynamics in multicellular organisms during processes such as development, adult tissue maintenance, injury repair and tumorigenesis. Advances in tracing or tracking methods, from light microscopy-based live cell tracking to fluorescent label-tracing with two-photon microscopy, together with emerging tissue clearing strategies and intravital imaging approaches have enabled scientists to decipher adult stem and progenitor cell properties in various tissues and in a wide variety of biological processes. Although technical advances have enabled time-controlled genetic labeling and simultaneous live imaging, a number of obstacles still need to be overcome. In this review, we aim to provide an in-depth description of the traditional use of lineage tracing as well as current strategies and upcoming new methods of labeling and imaging. [BMB Reports 2015; 48(12): 655-667] PMID:26634741

  17. NGC 7538 IRS. 1. Interaction of a Polarized Dust Spiral and a Molecular Outflow

    NASA Astrophysics Data System (ADS)

    Wright, M. C. H.; Hull, Charles L. H.; Pillai, Thushara; Zhao, Jun-Hui; Sandell, Göran

    2014-12-01

    We present dust polarization and CO molecular line images of NGC 7538 IRS 1. We combined data from the Submillimeter Array, the Combined Array for Research in Millimeter-wave Astronomy, and the James Clerk Maxwell Telescope to make images with ~2.''5 resolution at 230 and 345 GHz. The images show a remarkable spiral pattern in both the dust polarization and molecular outflow. These data dramatically illustrate the interplay between a high infall rate onto IRS 1 and a powerful outflow disrupting the dense, clumpy medium surrounding the star. The images of the dust polarization and the CO outflow presented here provide observational evidence for the exchange of energy and angular momentum between the infall and the outflow. The spiral dust pattern, which rotates through over 180° from IRS 1, may be a clumpy filament wound up by conservation of angular momentum in the infalling material. The redshifted CO emission ridge traces the dust spiral closely through the MM dust cores, several of which may contain protostars. We propose that the CO maps the boundary layer where the outflow is ablating gas from the dense gas in the spiral.

  18. Diuretic renography in evaluating dilated upper urinary tract in children

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ireton, R.C.; Parker, R.M.; Hayden, P.

    1987-02-01

    The diuretic renogram provides a previously unavailable noninvasive method for assessing and following urinary tract dilation of diverse cause, and defining true obstruction in children. Technetium-99m-DTPA (diethylenetriaminepentaacetic acid) is injected intravenously and a posteriorly placed gamma scintillation camera used to image the kidneys, ureters, and bladder. Furosemide is subsequently injected to stimulate a diuresis, and the washout pattern of isotope is monitored (time-activity histogram). Nonobstructive, obstructive, and poor renal function patterns were seen. Forty patients with varying degrees of hydroureteronephrosis were evaluated. Tracings were performed serially and compared with the clinical course in time, as well as with pressure flowmore » studies and operative findings. All patients with a nonobstructed diuretic renogram did well, except for 1 boy in whom ureteropelvic obstruction developed later. Difficulty in evaluating the obstructive renogram pattern occurred only in some children with severe (grade V) hydronephrosis. Further standardization of the diuretic renogram with regard to time of diuretic injection, state of patient hydration, and regions of imaging may improve diagnostic accuracy.« less

  19. Geological and hydrogeological investigation in West Malaysia

    NASA Technical Reports Server (NTRS)

    Ahmad, J. B. (Principal Investigator)

    1976-01-01

    The author has identified the following significant results. The broad synoptic view of the images allowed easy identification of circular features and major fault traces in low lying areas. Sedimentary units were delineated in accordance with the prevailing rock types and where applicable the folding characteristics. Igneous units could easily be differentiated by tone, degree of fracturing, texture, and drainage pattern. The larger fold structures, anticlinoriums and synclinoriums, of the younger sediments on the eastern edge of the central belt could also be easily delineated.

  20. New Orleans, Louisiana

    NASA Image and Video Library

    1989-05-08

    As one of the best ever views of the city of New Orleans, LA (30.0N, 90.0W) from space, this image allows the study of the city and the region in minute detail. Major city street and highway patterns can easily be traced. Even the Superdome near the old French Quarter can be seen as a large round white circle near the middle of the photo. The French Napoleonic Code land distribution system of long narrow fields fronting the river is also evident.

  1. Trace-element record in zircons during exhumation from UHP conditions, North-East Greenland Caledonides

    USGS Publications Warehouse

    McClelland, W.C.; Gilotti, J.A.; Mazdab, F.K.; Wooden, J.L.

    2009-01-01

    Coesite-bearing zircon formed at ultrahigh-pressure (UHP) conditions share general characteristics of eclogite-facies zircon with trace-element signatures characterized by depleted heavy rare earth elements (HREE), lack of an Eu anomaly, and low Th/ U ratios. Trace-element signatures of zircons from the Caledonian UHP terrane in North-East Greenland were used to examine the possible changes in signature with age during exhumation. Collection and interpretation of age and trace-element analyses of zircon from three samples of quartzofeldspathic gneiss and two leucocratic intrusions were guided by core vs. rim zoning patterns as imaged by cathodoluminesence. Change from igneous to eclogite-facies metamorphic trace-element signature in protolith zircon is characterized by gradual depletion of HREE, whereas newly formed metamorphic rims have flat HREE patterns and REE concentrations that are distinct from the recrystallized inherited cores. The signature associated with eclogite-facies metamorphic zircon is observed in coesite-bearing zircon formed at 358 ?? 4 Ma, metamorphic rims formed at 348 ?? 5 Ma during the initial stages of exhumation, and metamorphic rims formed at 337 ?? 5 Ma. Zircons from a garnet-bearing granite emplaced in the neck of an eclogite boudin and a leucocratic dike that cross-cuts amphibolite-facies structural fabrics have steeply sloping HREE patterns, variably developed negative Eu anomalies, and low Th/U ratios. The granite records initial decompression melting and exhumation at 347 ?? 2 Ma and later zircon rim growth at 329 ?? 5. The leucocratic dike was likely emplaced at amphibolite-facies conditions at 330 ?? 2 Ma, but records additional growth of compositionally similar zircon at 321 ??2 Ma. The difference between the trace-element signature of metamorphic zircon in the gneisses and in part coeval leucocratic intrusions indicates that the zircon signature varies as a function of lithology and context, thus enhancing its ability to aid in the interpretation of U-Pb data and track the exhumation history of UHP terranes. The differences may reflect variation in elemental availability through breakdown reactions in quartzofeldpathic gneiss vs. availability during melt production and/or crystallization. UHP rocks in North-East Greenland began exhumation by 347 ?? 2 Ma, were still at HP eclogite-facies conditions at 337 ?? 5 Ma and were at amphibolite-facies conditions by 330 ?? 2 Ma. ?? 2009 E. Schweizerbart'sche Verlagsbuchhandlung.

  2. Semi-automated detection of trace explosives in fingerprints on strongly interfering surfaces with Raman chemical imaging.

    PubMed

    Tripathi, Ashish; Emmons, Erik D; Wilcox, Phillip G; Guicheteau, Jason A; Emge, Darren K; Christesen, Steven D; Fountain, Augustus W

    2011-06-01

    We have previously demonstrated the use of wide-field Raman chemical imaging (RCI) to detect and identify the presence of trace explosives in contaminated fingerprints. In this current work we demonstrate the detection of trace explosives in contaminated fingerprints on strongly Raman scattering surfaces such as plastics and painted metals using an automated background subtraction routine. We demonstrate the use of partial least squares subtraction to minimize the interfering surface spectral signatures, allowing the detection and identification of explosive materials in the corrected Raman images. The resulting analyses are then visually superimposed on the corresponding bright field images to physically locate traces of explosives. Additionally, we attempt to address the question of whether a complete RCI of a fingerprint is required for trace explosive detection or whether a simple non-imaging Raman spectrum is sufficient. This investigation further demonstrates the ability to nondestructively identify explosives on fingerprints present on commonly found surfaces such that the fingerprint remains intact for further biometric analysis.

  3. Imaging a memory trace over half a life-time in the medial temporal lobe reveals a time-limited role of CA3 neurons in retrieval

    PubMed Central

    Lux, Vanessa; Atucha, Erika; Kitsukawa, Takashi; Sauvage, Magdalena M

    2016-01-01

    Whether retrieval still depends on the hippocampus as memories age or relies then on cortical areas remains a major controversy. Despite evidence for a functional segregation between CA1, CA3 and parahippocampal areas, their specific role within this frame is unclear. Especially, the contribution of CA3 is questionable as very remote memories might be too degraded to be used for pattern completion. To identify the specific role of these areas, we imaged brain activity in mice during retrieval of recent, early remote and very remote fear memories by detecting the immediate-early gene Arc. Investigating correlates of the memory trace over an extended period allowed us to report that, in contrast to CA1, CA3 is no longer recruited in very remote retrieval. Conversely, we showed that parahippocampal areas are then maximally engaged. These results suggest a shift from a greater contribution of the trisynaptic loop to the temporoammonic pathway for retrieval. DOI: http://dx.doi.org/10.7554/eLife.11862.001 PMID:26880561

  4. OBSERVATIONAL EVIDENCE AGAINST LONG-LIVED SPIRAL ARMS IN GALAXIES

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Foyle, K.; Rix, H.-W.; Walter, F.

    2011-07-10

    We test whether the spiral patterns apparent in many large disk galaxies should be thought of as dynamical features that are stationary in a corotating frame for {approx}> t{sub dyn}, as implied by the density wave approach for explaining spiral arms. If such spiral arms have enhanced star formation (SF), observational tracers for different stages of the SF sequence should show a spatial ordering, from upstream to downstream in the corotating frame: dense H I, CO, tracing molecular hydrogen gas, 24 {mu}m emission tracing enshrouded SF, and UV emission tracing unobscured young stars. We argue that such a spatial orderingmore » should be reflected in the angular cross-correlation (CC, in polar coordinates) using all azimuthal positions among pairs of these tracers; the peak of the CC should be offset from zero, in different directions inside and outside the corotation radius. Recent spiral SF simulations by Dobbs and Pringle show explicitly that for the case of a stationary spiral arm potential such angular offsets between gas and young stars of differing ages should be observable as cross-correlation offsets. We calculate the angular cross-correlations for different observational SF sequence tracers in 12 nearby spiral galaxies, drawing on a data set with high-quality maps of the neutral gas (H I, THINGS) and molecular gas (CO, HERACLES), along with 24 {mu}m emission (Spitzer, SINGS); we include FUV images (GALEX) and 3.6 {mu}m emission (Spitzer, IRAC) for some galaxies, tracing aging stars and longer timescales. In none of the resulting tracer cross-correlations for this sample do we find systematic angular offsets, which would be expected for a stationary dynamical spiral pattern of well-defined pattern speed. This result indicates that spiral density waves in their simplest form are not an important aspect of explaining spirals in large disk galaxies.« less

  5. Comparison Of Eigenvector-Based Statistical Pattern Recognition Algorithms For Hybrid Processing

    NASA Astrophysics Data System (ADS)

    Tian, Q.; Fainman, Y.; Lee, Sing H.

    1989-02-01

    The pattern recognition algorithms based on eigenvector analysis (group 2) are theoretically and experimentally compared in this part of the paper. Group 2 consists of Foley-Sammon (F-S) transform, Hotelling trace criterion (HTC), Fukunaga-Koontz (F-K) transform, linear discriminant function (LDF) and generalized matched filter (GMF). It is shown that all eigenvector-based algorithms can be represented in a generalized eigenvector form. However, the calculations of the discriminant vectors are different for different algorithms. Summaries on how to calculate the discriminant functions for the F-S, HTC and F-K transforms are provided. Especially for the more practical, underdetermined case, where the number of training images is less than the number of pixels in each image, the calculations usually require the inversion of a large, singular, pixel correlation (or covariance) matrix. We suggest solving this problem by finding its pseudo-inverse, which requires inverting only the smaller, non-singular image correlation (or covariance) matrix plus multiplying several non-singular matrices. We also compare theoretically the effectiveness for classification with the discriminant functions from F-S, HTC and F-K with LDF and GMF, and between the linear-mapping-based algorithms and the eigenvector-based algorithms. Experimentally, we compare the eigenvector-based algorithms using a set of image data bases each image consisting of 64 x 64 pixels.

  6. Reduction Characteristics of FM-Band Cross-Talks between Two Parallel Signal Traces on Printed Circuit Boards for Vehicles

    NASA Astrophysics Data System (ADS)

    Maeno, Tsuyoshi; Ueyama, Hiroya; Iida, Michihira; Fujiwara, Osamu

    It is well known that electromagnetic disturbances in vehicle-mounted radios are mainly caused by conducted noise currents flowing through wiring-harnesses from vehicle-mounted printed circuit boards (PCBs) with common ground patterns with slits. To suppress the noise current outflows from the PCBs of this kind, we previously measured noise current outflows from simple two-layer PCBs having two parallel signal traces and different ground patterns with/without slits, which revealed that making slits with open ends on the ground patterns in parallel with the traces can reduce the conducted noise currents. In the present study, with the FDTD simulation, we investigated reduction characteristics of the FM-band cross-talk noise levels between two parallel signal traces for eighteen PCBs, which have different ground patterns with/without slits parallel to the traces and dielectric layers with different thickness. As a result, we found that the cross-talk reduction effect due to slits is obtained by 3.6-5.3dB, while the cross-talks between signal traces are reduced in inverse proportion to the square of the dielectric-layer thickness and in proportion to the square of the trace interval and, which can quantitatively be explained from an inductive coupling theory.

  7. Comparison of different methods for estimating snowcover in forested, mountainous basins using LANDSAT (ERTS) images. [Washington and Santiam River, Oregon

    NASA Technical Reports Server (NTRS)

    Meier, M. J.; Evans, W. E.

    1975-01-01

    Snow-covered areas on LANDSAT (ERTS) images of the Santiam River basin, Oregon, and other basins in Washington were measured using several operators and methods. Seven methods were used: (1) Snowline tracing followed by measurement with planimeter, (2) mean snowline altitudes determined from many locations, (3) estimates in 2.5 x 2.5 km boxes of snow-covered area with reference to snow-free images, (4) single radiance-threshold level for entire basin, (5) radiance-threshold setting locally edited by reference to altitude contours and other images, (6) two-band color-sensitive extraction locally edited as in (5), and (7) digital (spectral) pattern recognition techniques. The seven methods are compared in regard to speed of measurement, precision, the ability to recognize snow in deep shadow or in trees, relative cost, and whether useful supplemental data are produced.

  8. Tracing cell lineages in videos of lens-free microscopy.

    PubMed

    Rempfler, Markus; Stierle, Valentin; Ditzel, Konstantin; Kumar, Sanjeev; Paulitschke, Philipp; Andres, Bjoern; Menze, Bjoern H

    2018-06-05

    In vitro experiments with cultured cells are essential for studying their growth and migration pattern and thus, for gaining a better understanding of cancer progression and its treatment. Recent progress in lens-free microscopy (LFM) has rendered it an inexpensive tool for label-free, continuous live cell imaging, yet there is only little work on analysing such time-lapse image sequences. We propose (1) a cell detector for LFM images based on fully convolutional networks and residual learning, and (2) a probabilistic model based on moral lineage tracing that explicitly handles multiple detections and temporal successor hypotheses by clustering and tracking simultaneously. (3) We benchmark our method in terms of detection and tracking scores on a dataset of three annotated sequences of several hours of LFM, where we demonstrate our method to produce high quality lineages. (4) We evaluate its performance on a somewhat more challenging problem: estimating cell lineages from the LFM sequence as would be possible from a corresponding fluorescence microscopy sequence. We present experiments on 16 LFM sequences for which we acquired fluorescence microscopy in parallel and generated annotations from them. Finally, (5) we showcase our methods effectiveness for quantifying cell dynamics in an experiment with skin cancer cells. Copyright © 2018 Elsevier B.V. All rights reserved.

  9. Verification technology of remote sensing camera satellite imaging simulation based on ray tracing

    NASA Astrophysics Data System (ADS)

    Gu, Qiongqiong; Chen, Xiaomei; Yang, Deyun

    2017-08-01

    Remote sensing satellite camera imaging simulation technology is broadly used to evaluate the satellite imaging quality and to test the data application system. But the simulation precision is hard to examine. In this paper, we propose an experimental simulation verification method, which is based on the test parameter variation comparison. According to the simulation model based on ray-tracing, the experiment is to verify the model precision by changing the types of devices, which are corresponding the parameters of the model. The experimental results show that the similarity between the imaging model based on ray tracing and the experimental image is 91.4%, which can simulate the remote sensing satellite imaging system very well.

  10. How Does the Sparse Memory “Engram” Neurons Encode the Memory of a Spatial–Temporal Event?

    PubMed Central

    Guan, Ji-Song; Jiang, Jun; Xie, Hong; Liu, Kai-Yuan

    2016-01-01

    Episodic memory in human brain is not a fixed 2-D picture but a highly dynamic movie serial, integrating information at both the temporal and the spatial domains. Recent studies in neuroscience reveal that memory storage and recall are closely related to the activities in discrete memory engram (trace) neurons within the dentate gyrus region of hippocampus and the layer 2/3 of neocortex. More strikingly, optogenetic reactivation of those memory trace neurons is able to trigger the recall of naturally encoded memory. It is still unknown how the discrete memory traces encode and reactivate the memory. Considering a particular memory normally represents a natural event, which consists of information at both the temporal and spatial domains, it is unknown how the discrete trace neurons could reconstitute such enriched information in the brain. Furthermore, as the optogenetic-stimuli induced recall of memory did not depend on firing pattern of the memory traces, it is most likely that the spatial activation pattern, but not the temporal activation pattern of the discrete memory trace neurons encodes the memory in the brain. How does the neural circuit convert the activities in the spatial domain into the temporal domain to reconstitute memory of a natural event? By reviewing the literature, here we present how the memory engram (trace) neurons are selected and consolidated in the brain. Then, we will discuss the main challenges in the memory trace theory. In the end, we will provide a plausible model of memory trace cell network, underlying the conversion of neural activities between the spatial domain and the temporal domain. We will also discuss on how the activation of sparse memory trace neurons might trigger the replay of neural activities in specific temporal patterns. PMID:27601979

  11. How Does the Sparse Memory "Engram" Neurons Encode the Memory of a Spatial-Temporal Event?

    PubMed

    Guan, Ji-Song; Jiang, Jun; Xie, Hong; Liu, Kai-Yuan

    2016-01-01

    Episodic memory in human brain is not a fixed 2-D picture but a highly dynamic movie serial, integrating information at both the temporal and the spatial domains. Recent studies in neuroscience reveal that memory storage and recall are closely related to the activities in discrete memory engram (trace) neurons within the dentate gyrus region of hippocampus and the layer 2/3 of neocortex. More strikingly, optogenetic reactivation of those memory trace neurons is able to trigger the recall of naturally encoded memory. It is still unknown how the discrete memory traces encode and reactivate the memory. Considering a particular memory normally represents a natural event, which consists of information at both the temporal and spatial domains, it is unknown how the discrete trace neurons could reconstitute such enriched information in the brain. Furthermore, as the optogenetic-stimuli induced recall of memory did not depend on firing pattern of the memory traces, it is most likely that the spatial activation pattern, but not the temporal activation pattern of the discrete memory trace neurons encodes the memory in the brain. How does the neural circuit convert the activities in the spatial domain into the temporal domain to reconstitute memory of a natural event? By reviewing the literature, here we present how the memory engram (trace) neurons are selected and consolidated in the brain. Then, we will discuss the main challenges in the memory trace theory. In the end, we will provide a plausible model of memory trace cell network, underlying the conversion of neural activities between the spatial domain and the temporal domain. We will also discuss on how the activation of sparse memory trace neurons might trigger the replay of neural activities in specific temporal patterns.

  12. Design and fabrication of semi-transparent screen based on micro-patterns for direct-view type head-up display in automobiles

    NASA Astrophysics Data System (ADS)

    Lee, Jae-Yong; Kim, Hyo-Jun; Kim, Young-Joo

    2016-02-01

    A semi-transparent screen with hemisphere micro-patterns was proposed and designed to enhance the brightness uniformity of the display image toward the driver for a direct-view type head-up display. The hemisphere micro-patterns were designed to consider the inclined angle of the windshield for efficient reflection and scattering toward to the driver. The density and radius of the hemisphere micro-patterns were adjusted as a function of position on the screen based on the geometrical calculation and analyzed by the commercial optical simulation tool based on a ray-tracing method. The designed hemisphere micro-patterns was fabricated by the thermal reflow method and evaluated to confirm the uniform illumination. From the results, the semi-transparent screen with variable micro-patterns shows the 91.9 % of brightness uniformity with the enhanced luminance compare to a screen without micro-patterns. A luminance of fabricated screen also shows good agreement with the simulation result to reflect the clear and bright driving information to the driver.

  13. Hyperspectral imaging for non-contact analysis of forensic traces.

    PubMed

    Edelman, G J; Gaston, E; van Leeuwen, T G; Cullen, P J; Aalders, M C G

    2012-11-30

    Hyperspectral imaging (HSI) integrates conventional imaging and spectroscopy, to obtain both spatial and spectral information from a specimen. This technique enables investigators to analyze the chemical composition of traces and simultaneously visualize their spatial distribution. HSI offers significant potential for the detection, visualization, identification and age estimation of forensic traces. The rapid, non-destructive and non-contact features of HSI mark its suitability as an analytical tool for forensic science. This paper provides an overview of the principles, instrumentation and analytical techniques involved in hyperspectral imaging. We describe recent advances in HSI technology motivating forensic science applications, e.g. the development of portable and fast image acquisition systems. Reported forensic science applications are reviewed. Challenges are addressed, such as the analysis of traces on backgrounds encountered in casework, concluded by a summary of possible future applications. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  14. Concept and analytical basis for revistas - A fast, flexible computer/graphic system for generating periodic satellite coverage patterns

    NASA Technical Reports Server (NTRS)

    King, J. C.

    1976-01-01

    The generation of satellite coverage patterns is facilitated by three basic strategies: use of a simplified physical model, permitting rapid closed-form calculation; separation of earth rotation and nodal precession from initial geometric analyses; and use of symmetries to construct traces of indefinite length by repetitive transposition of basic one-quadrant elements. The complete coverage patterns generated consist of a basic nadir trace plus a number of associated off-nadir traces, one for each sensor swath edge to be delineated. Each trace is generated by transposing one or two of the basic quadrant elements into a circle on a nonrotating earth model sphere, after which the circle is expanded into the actual 'helical' pattern by adding rotational displacements to the longitude coordinates. The procedure adapts to the important periodic coverage cases by direct insertion of the characteristic integers N and R (days and orbital revolutions, respectively, per coverage period).

  15. METscout: a pathfinder exploring the landscape of metabolites, enzymes and transporters.

    PubMed

    Geffers, Lars; Tetzlaff, Benjamin; Cui, Xiao; Yan, Jun; Eichele, Gregor

    2013-01-01

    METscout (http://metscout.mpg.de) brings together metabolism and gene expression landscapes. It is a MySQL relational database linking biochemical pathway information with 3D patterns of gene expression determined by robotic in situ hybridization in the E14.5 mouse embryo. The sites of expression of ∼1500 metabolic enzymes and of ∼350 solute carriers (SLCs) were included and are accessible as single cell resolution images and in the form of semi-quantitative image abstractions. METscout provides several graphical web-interfaces allowing navigation through complex anatomical and metabolic information. Specifically, the database shows where in the organism each of the many metabolic reactions take place and where SLCs transport metabolites. To link enzymatic reactions and transport, the KEGG metabolic reaction network was extended to include metabolite transport. This network in conjunction with spatial expression pattern of the network genes allows for a tracing of metabolic reactions and transport processes across the entire body of the embryo.

  16. Acquisition and processing pitfall with clipped traces in surface-wave analysis

    NASA Astrophysics Data System (ADS)

    Gao, Lingli; Pan, Yudi

    2016-02-01

    Multichannel analysis of surface waves (MASW) is widely used in estimating near-surface shear (S)-wave velocity. In the MASW method, generating a reliable dispersion image in the frequency-velocity (f-v) domain is an important processing step. A locus along peaks of dispersion energy at different frequencies allows the dispersion curves to be constructed for inversion. When the offsets are short, the output seismic data may exceed the dynamic ranges of geophones/seismograph, as a result of which, peaks and (or) troughs of traces will be squared off in recorded shot gathers. Dispersion images generated by the raw shot gathers with clipped traces would be contaminated by artifacts, which might be misidentified as Rayleigh-wave phase velocities or body-wave velocities and potentially lead to incorrect results. We performed some synthetic models containing clipped traces, and analyzed amplitude spectra of unclipped and clipped waves. The results indicate that artifacts in the dispersion image are dependent on the level of clipping. A real-world example also shows how clipped traces would affect the dispersion image. All the results suggest that clipped traces should be removed from the shot gathers before generating dispersion images, in order to pick accurate phase velocities and set reasonable initial inversion models.

  17. Reflective all-sky thermal infrared cloud imager.

    PubMed

    Redman, Brian J; Shaw, Joseph A; Nugent, Paul W; Clark, R Trevor; Piazzolla, Sabino

    2018-04-30

    A reflective all-sky imaging system has been built using a long-wave infrared microbolometer camera and a reflective metal sphere. This compact system was developed for measuring spatial and temporal patterns of clouds and their optical depth in support of applications including Earth-space optical communications. The camera is mounted to the side of the reflective sphere to leave the zenith sky unobstructed. The resulting geometric distortion is removed through an angular map derived from a combination of checkerboard-target imaging, geometric ray tracing, and sun-location-based alignment. A tape of high-emissivity material on the side of the reflector acts as a reference that is used to estimate and remove thermal emission from the metal sphere. Once a bias that is under continuing study was removed, sky radiance measurements from the all-sky imager in the 8-14 μm wavelength range agreed to within 0.91 W/(m 2 sr) of measurements from a previously calibrated, lens-based infrared cloud imager over its 110° field of view.

  18. A forensic science perspective on the role of images in crime investigation and reconstruction.

    PubMed

    Milliet, Quentin; Delémont, Olivier; Margot, Pierre

    2014-12-01

    This article presents a global vision of images in forensic science. The proliferation of perspectives on the use of images throughout criminal investigations and the increasing demand for research on this topic seem to demand a forensic science-based analysis. In this study, the definitions of and concepts related to material traces are revisited and applied to images, and a structured approach is used to persuade the scientific community to extend and improve the use of images as traces in criminal investigations. Current research efforts focus on technical issues and evidence assessment. This article provides a sound foundation for rationalising and explaining the processes involved in the production of clues from trace images. For example, the mechanisms through which these visual traces become clues of presence or action are described. An extensive literature review of forensic image analysis emphasises the existing guidelines and knowledge available for answering investigative questions (who, what, where, when and how). However, complementary developments are still necessary to demystify many aspects of image analysis in forensic science, including how to review and select images or use them to reconstruct an event or assist intelligence efforts. The hypothetico-deductive reasoning pathway used to discover unknown elements of an event or crime can also help scientists understand the underlying processes involved in their decision making. An analysis of a single image in an investigative or probative context is used to demonstrate the highly informative potential of images as traces and/or clues. Research efforts should be directed toward formalising the extraction and combination of clues from images. An appropriate methodology is key to expanding the use of images in forensic science. Copyright © 2014 Forensic Science Society. Published by Elsevier Ireland Ltd. All rights reserved.

  19. Gait COP trajectory of left side hip-dislocation and scoliotic patient using ankle-foot orthoses

    NASA Astrophysics Data System (ADS)

    Chong, Albert K.; Alrikabi, Redha; Milburn, Peter

    2017-07-01

    Plantar pressure-sensing mats and insole plantar sensor pads are ideal low-cost alternatives to force plates for capturing plantar COP excursion during gait. The acquired COP traces, in the form of pedobarographic images are favored by many clinicians and allied health professionals for evaluation of foot loading and balance in relation to foot biomechanics, foot injury, foot deformation, and foot ulceration. Researchers have recommended the use of COP trace for the biomechanical study of the deformed foot and lower-limb to improve orthosis design and testing. A correctly designed orthoses improves mobility and reduces pain in the foot, lower limb and lower spine region during gait. The research was carried out to evaluate the performance of two types of orthosis, namely: a custom-molded orthosis and an over-the-counter molded orthosis to determine the quality of gait of an adult scoliotic patient. COP trace patterns were compared with those of a healthy adult and showed the design of the custom-molded orthosis resulted in an improved quality of movements and provided enhanced stability for the deformed left foot during gait.

  20. MULTIPOLE GRAVITATIONAL LENSING AND HIGH-ORDER PERTURBATIONS ON THE QUADRUPOLE LENS

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Chu, Z.; Lin, W. P.; Li, G. L.

    2013-03-10

    An arbitrary surface mass density of the gravitational lens can be decomposed into multipole components. We simulate the ray tracing for the multipolar mass distribution of the generalized Singular Isothermal Sphere model based on deflection angles, which are analytically calculated. The magnification patterns in the source plane are then derived from an inverse shooting technique. As has been found, the caustics of odd mode lenses are composed of two overlapping layers for some lens models. When a point source traverses this kind of overlapping caustics, the image numbers change by {+-}4, rather than {+-}2. There are two kinds of causticmore » images. One is the critical curve and the other is the transition locus. It is found that the image number of the fold is exactly the average value of image numbers on two sides of the fold, while the image number of the cusp is equal to the smaller one. We also focus on the magnification patterns of the quadrupole (m = 2) lenses under the perturbations of m = 3, 4, and 5 mode components and found that one, two, and three butterfly or swallowtail singularities can be produced, respectively. With the increasing intensity of the high-order perturbations, the singularities grow up to bring sixfold image regions. If these perturbations are large enough to let two or three of the butterflies or swallowtails make contact, then eightfold or tenfold image regions can be produced as well. The possible astronomical applications are discussed.« less

  1. Predicting Cortical Dark/Bright Asymmetries from Natural Image Statistics and Early Visual Transforms

    PubMed Central

    Cooper, Emily A.; Norcia, Anthony M.

    2015-01-01

    The nervous system has evolved in an environment with structure and predictability. One of the ubiquitous principles of sensory systems is the creation of circuits that capitalize on this predictability. Previous work has identified predictable non-uniformities in the distributions of basic visual features in natural images that are relevant to the encoding tasks of the visual system. Here, we report that the well-established statistical distributions of visual features -- such as visual contrast, spatial scale, and depth -- differ between bright and dark image components. Following this analysis, we go on to trace how these differences in natural images translate into different patterns of cortical input that arise from the separate bright (ON) and dark (OFF) pathways originating in the retina. We use models of these early visual pathways to transform natural images into statistical patterns of cortical input. The models include the receptive fields and non-linear response properties of the magnocellular (M) and parvocellular (P) pathways, with their ON and OFF pathway divisions. The results indicate that there are regularities in visual cortical input beyond those that have previously been appreciated from the direct analysis of natural images. In particular, several dark/bright asymmetries provide a potential account for recently discovered asymmetries in how the brain processes visual features, such as violations of classic energy-type models. On the basis of our analysis, we expect that the dark/bright dichotomy in natural images plays a key role in the generation of both cortical and perceptual asymmetries. PMID:26020624

  2. Enhancement of PET Images

    NASA Astrophysics Data System (ADS)

    Davis, Paul B.; Abidi, Mongi A.

    1989-05-01

    PET is the only imaging modality that provides doctors with early analytic and quantitative biochemical assessment and precise localization of pathology. In PET images, boundary information as well as local pixel intensity are both crucial for manual and/or automated feature tracing, extraction, and identification. Unfortunately, the present PET technology does not provide the necessary image quality from which such precise analytic and quantitative measurements can be made. PET images suffer from significantly high levels of radial noise present in the form of streaks caused by the inexactness of the models used in image reconstruction. In this paper, our objective is to model PET noise and remove it without altering dominant features in the image. The ultimate goal here is to enhance these dominant features to allow for automatic computer interpretation and classification of PET images by developing techniques that take into consideration PET signal characteristics, data collection, and data reconstruction. We have modeled the noise steaks in PET images in both rectangular and polar representations and have shown both analytically and through computer simulation that it exhibits consistent mapping patterns. A class of filters was designed and applied successfully. Visual inspection of the filtered images show clear enhancement over the original images.

  3. First tomographic observations of gravity waves by the infrared limb imager GLORIA

    NASA Astrophysics Data System (ADS)

    Krisch, Isabell; Preusse, Peter; Ungermann, Jörn; Dörnbrack, Andreas; Eckermann, Stephen D.; Ern, Manfred; Friedl-Vallon, Felix; Kaufmann, Martin; Oelhaf, Hermann; Rapp, Markus; Strube, Cornelia; Riese, Martin

    2017-12-01

    Atmospheric gravity waves are a major cause of uncertainty in atmosphere general circulation models. This uncertainty affects regional climate projections and seasonal weather predictions. Improving the representation of gravity waves in general circulation models is therefore of primary interest. In this regard, measurements providing an accurate 3-D characterization of gravity waves are needed. Using the Gimballed Limb Observer for Radiance Imaging of the Atmosphere (GLORIA), the first airborne implementation of a novel infrared limb imaging technique, a gravity wave event over Iceland was observed. An air volume disturbed by this gravity wave was investigated from different angles by encircling the volume with a closed flight pattern. Using a tomographic retrieval approach, the measurements of this air mass at different angles allowed for a 3-D reconstruction of the temperature and trace gas structure. The temperature measurements were used to derive gravity wave amplitudes, 3-D wave vectors, and direction-resolved momentum fluxes. These parameters facilitated the backtracing of the waves to their sources on the southern coast of Iceland. Two wave packets are distinguished, one stemming from the main mountain ridge in the south of Iceland and the other from the smaller mountains in the north. The total area-integrated fluxes of these two wave packets are determined. Forward ray tracing reveals that the waves propagate laterally more than 2000 km away from their source region. A comparison of a 3-D ray-tracing version to solely column-based propagation showed that lateral propagation can help the waves to avoid critical layers and propagate to higher altitudes. Thus, the implementation of oblique gravity wave propagation into general circulation models may improve their predictive skills.

  4. Mapping age and trace elements using laser ablation split-stream (LASS) ICPMS

    NASA Astrophysics Data System (ADS)

    Kylander-Clark, A. R.; Hacker, B. R.; Cottle, J. M.

    2012-12-01

    One of the biggest challenges in the determination of the timing and rates of metamorphic processes is tying the age of a particular mineral to the conditions (i.e., pressure, temperature, fluid composition) at which that phase grew. Conventional microbeam techniques increase our understanding of crustal evolution by enabling this linkage; e.g., x-ray maps of monazite allow us to pinpoint grain segments that grew under a different set of conditions, cathodoluminescence images of zircon reveal zoning patterns and hence targets for dating different metamorphic and/or igneous events, and rare-earth element (REE) transects across garnet reveal the budget of a variety of trace elements during a metamorphic episode, to name but a few. More recent advances in LA-ICPMS and SIMS have allowed the ability to produce age maps or trace element maps—thus further our understanding of crystallization processes—but not both. Here we employ laser ablation split-stream (LASS) to quantitatively image the age, and trace element signature of datable phases such as zircon, monazite, titanite, and rutile in metamorphic rocks on the micron scale. By mapping the age and TE signature of a metamorphic phase, we can better interpret the metamorphic stage at which all portions of that phase grew, and relate it to other phases/portions of phases within that rock, such as garnet. For example, zircons and monazites from from eclogites reveal complex zoning in REEs indicating growth prior to, during, and post eclogite-facies metamorphism; those zones correspond to distinct age domains. Metamorphosed titanite reveals differences in diffusivities of TEs in inherited portions of the grain; e.g., Pb-loss is more prominent than diffusion of REEs, which in turn diffuse faster than higher charged ions, such as Th.

  5. Earth observation taken by the Expedition 42 crew

    NASA Image and Video Library

    2015-02-11

    ISS042E241898 (02/11/2015) --- Texas and the Gulf Coast at night as seen by the International Space Stations Earth observation cameras. This wide-angle, nighttime image was taken by astronauts looking out southeastward over the Gulf of Mexico. Lower center left shows the twin lights of San Antonio Texas with a short string of lights to Austin (further left). Houston, the home of the Johnson Space Center is the brightest directly above (Center left). Moonlight reflects diffusely off the waters of the gulf (image center left) making the largest but diffused illuminated area in the image. The sharp edge of light patterns of coastal cities trace out the long curve of the gulf shoreline—from New Orleans at the mouth of the Mississippi River, to Houston (both image left), to Brownsville (image center) in the westernmost gulf. City lights at great distances in Florida (image top left) and on Mexico’s Yucatán peninsula (image center right) suggest the full extent of the gulf basin, more than 930 miles, from Brownsville to Florida.

  6. Neural population-level memory traces in the mouse hippocampus.

    PubMed

    Chen, Guifen; Wang, L Phillip; Tsien, Joe Z

    2009-12-16

    One of the fundamental goals in neurosciences is to elucidate the formation and retrieval of brain's associative memory traces in real-time. Here, we describe real-time neural ensemble transient dynamics in the mouse hippocampal CA1 region and demonstrate their relationships with behavioral performances during both learning and recall. We employed the classic trace fear conditioning paradigm involving a neutral tone followed by a mild foot-shock 20 seconds later. Our large-scale recording and decoding methods revealed that conditioned tone responses and tone-shock association patterns were not present in CA1 during the first pairing, but emerged quickly after multiple pairings. These encoding patterns showed increased immediate-replay, correlating tightly with increased immediate-freezing during learning. Moreover, during contextual recall, these patterns reappeared in tandem six-to-fourteen times per minute, again correlating tightly with behavioral recall. Upon traced tone recall, while various fear memories were retrieved, the shock traces exhibited a unique recall-peak around the 20-second trace interval, further signifying the memory of time for the expected shock. Therefore, our study has revealed various real-time associative memory traces during learning and recall in CA1, and demonstrates that real-time memory traces can be decoded on a moment-to-moment basis over any single trial.

  7. Laws of evolution of slip trace pattern and its parameters with deformation in [1.8.12] – single crystals of Ni{sub 3}Fe alloy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Teplyakova, Ludmila, E-mail: lat168@mail.ru; Koneva, Nina, E-mail: koneva@mail.ru; Kunitsyna, Tatyana, E-mail: kma11061990@mail.ru

    2016-01-15

    The slip trace pattern of Ni{sub 3}Fe alloy single crystals with the short range order oriented for a single slip were investigated on replica at different stages of deformation using the transmission diffraction electron microscopy method. The connection of staging with the formation of slip trace pattern and the change of its parameters were established. The number of local areas where two or more slip systems work is increased with the change of stages. In these conditions the character of slip localization in the primary slip system is changed from the packets to the homogeneous distribution. The distributions of themore » distances between slip traces and the shear power in slip traces were plotted. The correlation between the average value of the shear power in the primary slip traces and the average distance between them was revealed in this work. It was established that the rates of the average value growth of the relative local shear and the shear power in the slip traces reach the largest values at the transition stage.« less

  8. Transmission electron microscope studies of extraterrestrial materials

    NASA Technical Reports Server (NTRS)

    Keller, Lindsay P.

    1995-01-01

    Transmission Electron Microscopy, X-Ray spectrometry and electron-energy-loss spectroscopy are used to analyse carbon in interplanetary dust particles. Optical micrographs are shown depicting cross sections of the dust particles embedded in sulphur. Selected-area electron diffraction patterns are shown. Transmission Electron Microscope specimens of lunar soil were prepared using two methods: ion-milling and ultramicrotomy. A combination of high resolution TEM imaging and electron diffraction is used to characterize the opaque assemblages. The opaque assemblages analyzed in this study are dominated by ilmenite with lesser rutile and spinel exsolutions, and traces of Fe metal.

  9. Investigation into the Effect of Acoustic Radiation Force and Acoustic Streaming on Particle Patterning in Acoustic Standing Wave Fields

    PubMed Central

    Yang, Yanye; Ni, Zhengyang; Guo, Xiasheng; Luo, Linjiao; Tu, Juan; Zhang, Dong

    2017-01-01

    Acoustic standing waves have been widely used in trapping, patterning, and manipulating particles, whereas one barrier remains: the lack of understanding of force conditions on particles which mainly include acoustic radiation force (ARF) and acoustic streaming (AS). In this paper, force conditions on micrometer size polystyrene microspheres in acoustic standing wave fields were investigated. The COMSOL® Mutiphysics particle tracing module was used to numerically simulate force conditions on various particles as a function of time. The velocity of particle movement was experimentally measured using particle imaging velocimetry (PIV). Through experimental and numerical simulation, the functions of ARF and AS in trapping and patterning were analyzed. It is shown that ARF is dominant in trapping and patterning large particles while the impact of AS increases rapidly with decreasing particle size. The combination of using both ARF and AS for medium size particles can obtain different patterns with only using ARF. Findings of the present study will aid the design of acoustic-driven microfluidic devices to increase the diversity of particle patterning. PMID:28753955

  10. High-resolution imaging of selenium in kidneys: a localized selenium pool associated with glutathione peroxidase 3

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Malinouski, M.; Kehr, S.; Finney, L.

    2012-04-17

    Recent advances in quantitative methods and sensitive imaging techniques of trace elements provide opportunities to uncover and explain their biological roles. In particular, the distribution of selenium in tissues and cells under both physiological and pathological conditions remains unknown. In this work, we applied high-resolution synchrotron X-ray fluorescence microscopy (XFM) to map selenium distribution in mouse liver and kidney. Liver showed a uniform selenium distribution that was dependent on selenocysteine tRNA{sup [Ser]Sec} and dietary selenium. In contrast, kidney selenium had both uniformly distributed and highly localized components, the latter visualized as thin circular structures surrounding proximal tubules. Other parts ofmore » the kidney, such as glomeruli and distal tubules, only manifested the uniformly distributed selenium pattern that co-localized with sulfur. We found that proximal tubule selenium localized to the basement membrane. It was preserved in Selenoprotein P knockout mice, but was completely eliminated in glutathione peroxidase 3 (GPx3) knockout mice, indicating that this selenium represented GPx3. We further imaged kidneys of another model organism, the naked mole rat, which showed a diminished uniformly distributed selenium pool, but preserved the circular proximal tubule signal. We applied XFM to image selenium in mammalian tissues and identified a highly localized pool of this trace element at the basement membrane of kidneys that was associated with GPx3. XFM allowed us to define and explain the tissue topography of selenium in mammalian kidneys at submicron resolution.« less

  11. Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrels.

    PubMed

    Si, Dong; He, Jing

    2014-01-01

    Electron cryo-microscopy (Cryo-EM) technique produces 3-dimensional (3D) density images of proteins. When resolution of the images is not high enough to resolve the molecular details, it is challenging for image processing methods to enhance the molecular features. β-barrel is a particular structure feature that is formed by multiple β-strands in a barrel shape. There is no existing method to derive β-strands from the 3D image of a β-barrel at medium resolutions. We propose a new method, StrandRoller, to generate a small set of possible β-traces from the density images at medium resolutions of 5-10Å. StrandRoller has been tested using eleven β-barrel images simulated to 10Å resolution and one image isolated from the experimentally derived cryo-EM density image at 6.7Å resolution. StrandRoller was able to detect 81.84% of the β-strands with an overall 1.5Å 2-way distance between the detected and the observed β-traces, if the best of fifteen detections is considered. Our results suggest that it is possible to derive a small set of possible β-traces from the β-barrel cryo-EM image at medium resolutions even when no separation of the β-strands is visible in the images.

  12. How detrimental is eye movement during photorefractive keratectomy to the patient's postoperative vision?

    NASA Astrophysics Data System (ADS)

    Taylor, Natalie M.; van Saarloos, Paul P.; Eikelboom, Robert H.

    2000-06-01

    This study aimed to gauge the effect of the patient's eye movement during Photo Refractive Keratectomy (PRK) on post- operative vision. A computer simulation of both the PRK procedure and the visual outcome has been performed. The PRK simulation incorporated the pattern of movement of the laser beam to perform a given correction, the beam characteristics, an initial corneal profile, and an eye movement scenario; and generated the corrected corneal profile. The regrowth of the epithelium was simulated by selecting the smoothing filter which, when applied to a corrected cornea with no patient eye movement, produced similar ray tracing results to the original corneal model. Ray tracing several objects, such as letters of various contrast and sizes was performed to assess the quality of the post-operative vision. Eye movement scenarios included no eye movement, constant decentration and normally distributed random eye movement of varying magnitudes. Random eye movement of even small amounts, such as 50 microns reduces the contrast sensitivity of the image. Constant decentration decenters the projected image on the retina, and in extreme cases can lead to astigmatism. Eye movements of the magnitude expected during laser refractive surgery have minimal effect on the final visual outcome.

  13. Long Creek Creek Mine Drainage Study: South Fork Reservation: Final Report

    EPA Science Inventory

    To characterize water quality in streams affected by historical mining it is necessary to determine the seasonal and spatial distribution patterns of trace metals concentrations. Identification of these patterns is used to identify the trace metals that are of ecological concern ...

  14. History of Chandra X-Ray Observatory

    NASA Image and Video Library

    1999-09-01

    After barely 2 months in space, the Chandra X-Ray Observatory (CXO) took this sturning image of the Crab Nebula, the spectacular remains of a stellar explosion, revealing something never seen before, a brilliant ring around the nebula's heart. The image shows the central pulsar surrounded by tilted rings of high-energy particles that appear to have been flung outward over a distance of more than a light-year from the pulsar. Perpendicular to the rings, jet-like structures produced by high-energy particles blast away from the pulsar. Hubble Space Telescope images have shown moving knots and wisps around the neutron star, and previous x-ray images have shown the outer parts of the jet and hinted at the ring structure. With CXO's exceptional resolution, the jet can be traced all the way in to the neutron star, and the ring pattern clearly appears. The image was made with CXO's Advanced Charge-Coupled Device (CCD) Imaging Spectrometer (ACIS) and High Energy Transmission Grating. The Crab Nebula, easily the most intensively studied object beyond our solar system, has been observed using virtually every astronomical instrument that could see that part of the sky

  15. Diffractive micro-optical element with nonpoint response

    NASA Astrophysics Data System (ADS)

    Soifer, Victor A.; Golub, Michael A.

    1993-01-01

    Common-use diffractive lenses have microrelief zones in the form of simple rings that provide only an optical power but do not contain any image information. They have a point-image response under point-source illumination. We must use a more complicated non-point response to focus a light beam into different light marks, letter-type images as well as for optical pattern recognition. The current presentation describes computer generation of diffractive micro- optical elements with complicated curvilinear zones of a regular piecewise-smooth structure and grey-level or staircase phase microrelief. The manufacture of non-point response elements uses the steps of phase-transfer calculation and orthogonal-scan masks generation or lithographic glass etching. Ray-tracing method is shown to be applicable in this task. Several working samples of focusing optical elements generated by computer and photolithography are presented. Using the experimental results we discuss here such applications as laser branding.

  16. Modeling ECM fiber formation: structure information extracted by analysis of 2D and 3D image sets

    NASA Astrophysics Data System (ADS)

    Wu, Jun; Voytik-Harbin, Sherry L.; Filmer, David L.; Hoffman, Christoph M.; Yuan, Bo; Chiang, Ching-Shoei; Sturgis, Jennis; Robinson, Joseph P.

    2002-05-01

    Recent evidence supports the notion that biological functions of extracellular matrix (ECM) are highly correlated to its structure. Understanding this fibrous structure is very crucial in tissue engineering to develop the next generation of biomaterials for restoration of tissues and organs. In this paper, we integrate confocal microscopy imaging and image-processing techniques to analyze the structural properties of ECM. We describe a 2D fiber middle-line tracing algorithm and apply it via Euclidean distance maps (EDM) to extract accurate fibrous structure information, such as fiber diameter, length, orientation, and density, from single slices. Based on a 2D tracing algorithm, we extend our analysis to 3D tracing via Euclidean distance maps to extract 3D fibrous structure information. We use computer simulation to construct the 3D fibrous structure which is subsequently used to test our tracing algorithms. After further image processing, these models are then applied to a variety of ECM constructions from which results of 2D and 3D traces are statistically analyzed.

  17. Trace-element abundances in several new ureilites

    NASA Technical Reports Server (NTRS)

    Boynton, William V.; Hill, Dolores H.

    1993-01-01

    Four new ureilites are analyzed for trace-element abundances. Frontier Mountain (FRO) 90054 is an augite-rich ureilite and has high rare earth element (REE) abundances with a pattern expected of augite. FRO 90036 and Acfer 277 have REE patterns similar to the V-shape pattern of other ureilites. Nuevo Mercurio (b) has very high REE abundances, but they look like they are due to terrestrial alteration. The siderophile-element pattern of these ureilites are similar to those of known ureilites.

  18. Investigation of Latent Traces Using Infrared Reflectance Hyperspectral Imaging

    NASA Astrophysics Data System (ADS)

    Schubert, Till; Wenzel, Susanne; Roscher, Ribana; Stachniss, Cyrill

    2016-06-01

    The detection of traces is a main task of forensics. Hyperspectral imaging is a potential method from which we expect to capture more fluorescence effects than with common forensic light sources. This paper shows that the use of hyperspectral imaging is suited for the analysis of latent traces and extends the classical concept to the conservation of the crime scene for retrospective laboratory analysis. We examine specimen of blood, semen and saliva traces in several dilution steps, prepared on cardboard substrate. As our key result we successfully make latent traces visible up to dilution factor of 1:8000. We can attribute most of the detectability to interference of electromagnetic light with the water content of the traces in the shortwave infrared region of the spectrum. In a classification task we use several dimensionality reduction methods (PCA and LDA) in combination with a Maximum Likelihood classifier, assuming normally distributed data. Further, we use Random Forest as a competitive approach. The classifiers retrieve the exact positions of labelled trace preparation up to highest dilution and determine posterior probabilities. By modelling the classification task with a Markov Random Field we are able to integrate prior information about the spatial relation of neighboured pixel labels.

  19. Retrospective 70 y-spatial analysis of repeated vine mortality patterns using ancient aerial time series, Pléiades images and multi-source spatial and field data

    NASA Astrophysics Data System (ADS)

    Vaudour, E.; Leclercq, L.; Gilliot, J. M.; Chaignon, B.

    2017-06-01

    For any wine estate, there is a need to demarcate homogeneous within-vineyard zones ('terroirs') so as to manage grape production, which depends on vine biological condition. Until now, the studies performing digital zoning of terroirs have relied on recent spatial data and scant attention has been paid to ancient geoinformation likely to retrace past biological condition of vines and especially occurrence of vine mortality. Is vine mortality characterized by recurrent and specific patterns and if so, are these patterns related to terroir units and/or past landuse? This study aimed at performing a historical and spatial tracing of vine mortality patterns using a long time-series of aerial survey images (1947-2010), in combination with recent data: soil apparent electrical conductivity EM38 measurements, very high resolution Pléiades satellite images, and a detailed field survey. Within a 6 ha-estate in the Southern Rhone Valley, landuse and planting history were retraced and the map of missing vines frequency was constructed from the whole time series including a 2015-Pléiades panchromatic band. Within-field terroir units were obtained from a support vector machine classifier computed on the spectral bands and NDVI of Pléiades images, EM38 data and morphometric data. Repeated spatial patterns of missing vines were highlighted throughout several plantings, uprootings, and vine replacements, and appeared to match some within-field terroir units, being explained by their specific soil characteristics, vine/soil management choices and the past landuse of the 1940s. Missing vines frequency was spatially correlated with topsoil CaCO3 content, and negatively correlated with topsoil iron, clay, total N, organic C contents and NDVI. A retrospective spatio-temporal assessment of terroir therefore brings a renewed focus on some key parameters for maintaining a sustainable grape production.

  20. Automated quantification of neurite outgrowth orientation distributions on patterned surfaces

    NASA Astrophysics Data System (ADS)

    Payne, Matthew; Wang, Dadong; Sinclair, Catriona M.; Kapsa, Robert M. I.; Quigley, Anita F.; Wallace, Gordon G.; Razal, Joselito M.; Baughman, Ray H.; Münch, Gerald; Vallotton, Pascal

    2014-08-01

    Objective. We have developed an image analysis methodology for quantifying the anisotropy of neuronal projections on patterned substrates. Approach. Our method is based on the fitting of smoothing splines to the digital traces produced using a non-maximum suppression technique. This enables precise estimates of the local tangents uniformly along the neurite length, and leads to unbiased orientation distributions suitable for objectively assessing the anisotropy induced by tailored surfaces. Main results. In our application, we demonstrate that carbon nanotubes arrayed in parallel bundles over gold surfaces induce a considerable neurite anisotropy; a result which is relevant for regenerative medicine. Significance. Our pipeline is generally applicable to the study of fibrous materials on 2D surfaces and should also find applications in the study of DNA, microtubules, and other polymeric materials.

  1. Real time ray tracing based on shader

    NASA Astrophysics Data System (ADS)

    Gui, JiangHeng; Li, Min

    2017-07-01

    Ray tracing is a rendering algorithm for generating an image through tracing lights into an image plane, it can simulate complicate optical phenomenon like refraction, depth of field and motion blur. Compared with rasterization, ray tracing can achieve more realistic rendering result, however with greater computational cost, simple scene rendering can consume tons of time. With the GPU's performance improvement and the advent of programmable rendering pipeline, complicated algorithm can also be implemented directly on shader. So, this paper proposes a new method that implement ray tracing directly on fragment shader, mainly include: surface intersection, importance sampling and progressive rendering. With the help of GPU's powerful throughput capability, it can implement real time rendering of simple scene.

  2. The application of UV multispectral technology in extract trace evdidence

    NASA Astrophysics Data System (ADS)

    Guo, Jingjing; Xu, Xiaojing; Li, Zhihui; Xu, Lei; Xie, Lanchi

    2015-11-01

    Multispectral imaging is becoming more and more important in the field of examination of material evidence, especially the ultraviolet spectral imaging. Fingerprints development, questioned document detection, trace evidence examination-all can used of it. This paper introduce a UV multispectral equipment which was developed by BITU & IFSC, it can extract trace evidence-extract fingerprints. The result showed that this technology can develop latent sweat-sebum mixed fingerprint on photo and ID card blood fingerprint on steel hold. We used the UV spectrum data analysis system to make the UV spectral image clear to identify and analyse.

  3. DeepNeuron: an open deep learning toolbox for neuron tracing.

    PubMed

    Zhou, Zhi; Kuo, Hsien-Chi; Peng, Hanchuan; Long, Fuhui

    2018-06-06

    Reconstructing three-dimensional (3D) morphology of neurons is essential for understanding brain structures and functions. Over the past decades, a number of neuron tracing tools including manual, semiautomatic, and fully automatic approaches have been developed to extract and analyze 3D neuronal structures. Nevertheless, most of them were developed based on coding certain rules to extract and connect structural components of a neuron, showing limited performance on complicated neuron morphology. Recently, deep learning outperforms many other machine learning methods in a wide range of image analysis and computer vision tasks. Here we developed a new Open Source toolbox, DeepNeuron, which uses deep learning networks to learn features and rules from data and trace neuron morphology in light microscopy images. DeepNeuron provides a family of modules to solve basic yet challenging problems in neuron tracing. These problems include but not limited to: (1) detecting neuron signal under different image conditions, (2) connecting neuronal signals into tree(s), (3) pruning and refining tree morphology, (4) quantifying the quality of morphology, and (5) classifying dendrites and axons in real time. We have tested DeepNeuron using light microscopy images including bright-field and confocal images of human and mouse brain, on which DeepNeuron demonstrates robustness and accuracy in neuron tracing.

  4. A metal artifact reduction algorithm in CT using multiple prior images by recursive active contour segmentation

    PubMed Central

    Nam, Haewon

    2017-01-01

    We propose a novel metal artifact reduction (MAR) algorithm for CT images that completes a corrupted sinogram along the metal trace region. When metal implants are located inside a field of view, they create a barrier to the transmitted X-ray beam due to the high attenuation of metals, which significantly degrades the image quality. To fill in the metal trace region efficiently, the proposed algorithm uses multiple prior images with residual error compensation in sinogram space. Multiple prior images are generated by applying a recursive active contour (RAC) segmentation algorithm to the pre-corrected image acquired by MAR with linear interpolation, where the number of prior image is controlled by RAC depending on the object complexity. A sinogram basis is then acquired by forward projection of the prior images. The metal trace region of the original sinogram is replaced by the linearly combined sinogram of the prior images. Then, the additional correction in the metal trace region is performed to compensate the residual errors occurred by non-ideal data acquisition condition. The performance of the proposed MAR algorithm is compared with MAR with linear interpolation and the normalized MAR algorithm using simulated and experimental data. The results show that the proposed algorithm outperforms other MAR algorithms, especially when the object is complex with multiple bone objects. PMID:28604794

  5. The effect of irregular breathing patterns on internal target volumes in four-dimensional CT and cone-beam CT images in the context of stereotactic lung radiotherapy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Clements, N.; Kron, T.; Roxby, P.

    2013-02-15

    Purpose: Stereotactic lung radiotherapy is complicated by tumor motion from patient respiration. Four-dimensional CT (4DCT) imaging is a motion compensation method used in treatment planning to generate a maximum intensity projection (MIP) internal target volume (ITV). Image guided radiotherapy during treatment may involve acquiring a volumetric cone-beam CT (CBCT) image and visually aligning the tumor to the planning 4DCT MIP ITV contour. Moving targets imaged with CBCT can appear blurred and currently there are no studies reporting on the effect that irregular breathing patterns have on CBCT volumes and their alignment to 4DCT MIP ITV contours. The objective of thismore » work was therefore to image a phantom moving with irregular breathing patterns to determine whether any configurations resulted in errors in volume contouring or alignment. Methods: A Perspex thorax phantom was used to simulate a patient. Three wooden 'lung' inserts with embedded Perspex 'lesions' were moved up to 4 cm with computer-generated motion patterns, and up to 1 cm with patient-specific breathing patterns. The phantom was imaged on 4DCT and CBCT with the same acquisition settings used for stereotactic lung patients in the clinic and the volumes on all phantom images were contoured. This project assessed the volumes for qualitative and quantitative changes including volume, length of the volume, and errors in alignment between CBCT volumes and 4DCT MIP ITV contours. Results: When motion was introduced 4DCT and CBCT volumes were reduced by up to 20% and 30% and shortened by up to 7 and 11 mm, respectively, indicating that volume was being under-represented at the extremes of motion. Banding artifacts were present in 4DCT MIP images, while CBCT volumes were largely reduced in contrast. When variable amplitudes from patient traces were used and CBCT ITVs were compared to 4DCT MIP ITVs there was a distinct trend in reduced ITV with increasing amplitude that was not seen when compared to true ITVs. Breathing patterns with a rest period following expiration resulted in well-defined superior edges and were better aligned using an edge-to-edge alignment technique. In most cases, sinusoidal motion patterns resulted in the closest agreements to true values and the smallest misalignments. Conclusions: Strategies are needed to compensate for volume losses at the extremes of motion for both 4DCT MIP and CBCT images for larger and varied amplitudes, and for patterns with rest periods following expiration. Lesions moving greater than 2 cm would warrant larger treatment margins added to the 4DCT MIP ITV to account for the volume being under-represented at the extremes of motion. Lesions moving with a rest period following expiration would be better aligned using an edge-to-edge alignment technique. Sinusoidal patterns represented the ideal clinical scenario, reinforcing the importance of investigating clinically relevant motions and their effects on 4DCT MIP and CBCT volumes. Since most patients do not breathe sinusoidally this may lead to misinterpretation of previous studies using only sinusoidal motion.« less

  6. The effect of irregular breathing patterns on internal target volumes in four-dimensional CT and cone-beam CT images in the context of stereotactic lung radiotherapy.

    PubMed

    Clements, N; Kron, T; Franich, R; Dunn, L; Roxby, P; Aarons, Y; Chesson, B; Siva, S; Duplan, D; Ball, D

    2013-02-01

    Stereotactic lung radiotherapy is complicated by tumor motion from patient respiration. Four-dimensional CT (4DCT) imaging is a motion compensation method used in treatment planning to generate a maximum intensity projection (MIP) internal target volume (ITV). Image guided radiotherapy during treatment may involve acquiring a volumetric cone-beam CT (CBCT) image and visually aligning the tumor to the planning 4DCT MIP ITV contour. Moving targets imaged with CBCT can appear blurred and currently there are no studies reporting on the effect that irregular breathing patterns have on CBCT volumes and their alignment to 4DCT MIP ITV contours. The objective of this work was therefore to image a phantom moving with irregular breathing patterns to determine whether any configurations resulted in errors in volume contouring or alignment. A Perspex thorax phantom was used to simulate a patient. Three wooden "lung" inserts with embedded Perspex "lesions" were moved up to 4 cm with computer-generated motion patterns, and up to 1 cm with patient-specific breathing patterns. The phantom was imaged on 4DCT and CBCT with the same acquisition settings used for stereotactic lung patients in the clinic and the volumes on all phantom images were contoured. This project assessed the volumes for qualitative and quantitative changes including volume, length of the volume, and errors in alignment between CBCT volumes and 4DCT MIP ITV contours. When motion was introduced 4DCT and CBCT volumes were reduced by up to 20% and 30% and shortened by up to 7 and 11 mm, respectively, indicating that volume was being under-represented at the extremes of motion. Banding artifacts were present in 4DCT MIP images, while CBCT volumes were largely reduced in contrast. When variable amplitudes from patient traces were used and CBCT ITVs were compared to 4DCT MIP ITVs there was a distinct trend in reduced ITV with increasing amplitude that was not seen when compared to true ITVs. Breathing patterns with a rest period following expiration resulted in well-defined superior edges and were better aligned using an edge-to-edge alignment technique. In most cases, sinusoidal motion patterns resulted in the closest agreements to true values and the smallest misalignments. Strategies are needed to compensate for volume losses at the extremes of motion for both 4DCT MIP and CBCT images for larger and varied amplitudes, and for patterns with rest periods following expiration. Lesions moving greater than 2 cm would warrant larger treatment margins added to the 4DCT MIP ITV to account for the volume being under-represented at the extremes of motion. Lesions moving with a rest period following expiration would be better aligned using an edge-to-edge alignment technique. Sinusoidal patterns represented the ideal clinical scenario, reinforcing the importance of investigating clinically relevant motions and their effects on 4DCT MIP and CBCT volumes. Since most patients do not breathe sinusoidally this may lead to misinterpretation of previous studies using only sinusoidal motion.

  7. A pitfall of muting and removing bad traces in surface-wave analysis

    NASA Astrophysics Data System (ADS)

    Hu, Yue; Xia, Jianghai; Mi, Binbin; Cheng, Feng; Shen, Chao

    2018-06-01

    Multi-channel analysis of surface/Love wave (MASW/MALW) has been widely used to construct the shallow shear (S)-wave velocity profile. The key step in surface-wave analysis is to generate accurate dispersion energy and pick the dispersive curves for inversion along the peaks of dispersion energy at different frequencies. In near-surface surface-wave acquisition, bad traces are very common and inevitable due to the imperfections in the recording instruments or others. The existence of bad traces will cause some artifacts in the dispersion energy image. To avoid the interference of bad traces on the surface-wave analysis, the bad traces should be alternatively muted (zeroed) or removed (deleted) from the raw surface-wave data before dispersion measurement. Most geophysicists and civil engineers, however, are not aware of the differences and implications between muting and removing of bad traces in surface-wave analysis. A synthetic test and a real-world example demonstrate the potential pitfalls of applying muting and removing on bad traces when using different dispersion-imaging methods. We implement muting and removing on bad traces respectively before dispersion measurement, and compare the influence of the two operations on three dispersion-imaging methods, high-resolution linear Radon transform (HRLRT), f-k transformation, and phase shift method. Results indicate that when using the HRLRT to generate the dispersive energy, muting bad traces will cause an even more complicated and discontinuous dispersive energy. When f-k transformation is utilized to conduct dispersive analysis, bad traces should be muted instead of removed to generate an accurate dispersion image to avoid the uneven sampling problem in the Fourier transform. As for the phase shift method, the difference between the two operations is slight, but we suggest that removal should be chosen because the integral for the phase-shift operator of the zeroed traces would bring in the sloped aliasing. This study provides a pre-process guidance for the real-world surface-wave data processing when the recorded shot gather contains inevitable bad traces.

  8. An image registration pipeline for analysis of transsynaptic tracing in mice

    NASA Astrophysics Data System (ADS)

    Kutten, Kwame S.; Eacker, Stephen M.; Dawson, Valina L.; Dawson, Ted M.; Ratnanather, Tilak; Miller, Michael I.

    2016-03-01

    Parkinson's Disease (PD) is a movement disorder characterized by the loss of dopamine neurons in the substantia nigra pars compacta (SNpc) and norepinephrine neurons in the locus coeruleus (LC). To further understand the pathophysiology of PD, the input neurons of the SNpc and LC will be transsynapticly traced in mice using a fluorescent recombinant rabies virus (RbV) and imaged using serial two-photon tomography (STP). A mapping between these images and a brain atlas must be found to accurately determine the locations of input neurons in the brain. Therefore a registration pipeline to align the Allen Reference Atlas (ARA) to these types of images was developed. In the preprocessing step, a brain mask was generated from the transsynaptic tracing images using simple morphological operators. The masks were then registered to the ARA using Large Deformation Diffeomorphic Metric Mapping (LDDMM), an algorithm specialized for calculating anatomically realistic transforms between images. The pipeline was then tested on an STP scan of a mouse brain labeled by an adeno-associated virus (AAV). Based on qualitative evaluation of the registration results, the pipeline was found to be sufficient for use with transsynaptic RbV tracing.

  9. Electrode configuration and signal subtraction technique for single polarity charge carrier sensing in ionization detectors

    DOEpatents

    Luke, Paul

    1996-01-01

    An ionization detector electrode and signal subtraction apparatus and method provides at least one first conductive trace formed onto the first surface of an ionization detector. The first surface opposes a second surface of the ionization detector. At least one second conductive trace is also formed on the first surface of the ionization detector in a substantially interlaced and symmetrical pattern with the at least one first conductive trace. Both of the traces are held at a voltage potential of a first polarity type. By forming the traces in a substantially interlaced and symmetric pattern, signals generated by a charge carrier are substantially of equal strength with respect to both of the traces. The only significant difference in measured signal strength occurs when the charge carrier moves to within close proximity of the traces and is received at the collecting trace. The measured signals are then subtracted and compared to quantitatively measure the magnitude of the charge and to determine the position at which the charge carrier originated within the ionization detector.

  10. Electrode configuration and signal subtraction technique for single polarity charge carrier sensing in ionization detectors

    DOEpatents

    Luke, P.

    1996-06-25

    An ionization detector electrode and signal subtraction apparatus and method provide at least one first conductive trace formed onto the first surface of an ionization detector. The first surface opposes a second surface of the ionization detector. At least one second conductive trace is also formed on the first surface of the ionization detector in a substantially interlaced and symmetrical pattern with the at least one first conductive trace. Both of the traces are held at a voltage potential of a first polarity type. By forming the traces in a substantially interlaced and symmetric pattern, signals generated by a charge carrier are substantially of equal strength with respect to both of the traces. The only significant difference in measured signal strength occurs when the charge carrier moves to within close proximity of the traces and is received at the collecting trace. The measured signals are then subtracted and compared to quantitatively measure the magnitude of the charge and to determine the position at which the charge carrier originated within the ionization detector. 9 figs.

  11. Reflective all-sky thermal infrared cloud imager

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Redman, Brian J.; Shaw, Joseph A.; Nugent, Paul W.

    A reflective all-sky imaging system has been built using a long-wave infrared microbolometer camera and a reflective metal sphere. This compact system was developed for measuring spatial and temporal patterns of clouds and their optical depth in support of applications including Earth-space optical communications. The camera is mounted to the side of the reflective sphere to leave the zenith sky unobstructed. The resulting geometric distortion is removed through an angular map derived from a combination of checkerboard-target imaging, geometric ray tracing, and sun-location-based alignment. A tape of high-emissivity material on the side of the reflector acts as a reference thatmore » is used to estimate and remove thermal emission from the metal sphere. In conclusion, once a bias that is under continuing study was removed, sky radiance measurements from the all-sky imager in the 8-14 μm wavelength range agreed to within 0.91 W/(m 2 sr) of measurements from a previously calibrated, lens-based infrared cloud imager over its 110° field of view.« less

  12. Reflective all-sky thermal infrared cloud imager

    DOE PAGES

    Redman, Brian J.; Shaw, Joseph A.; Nugent, Paul W.; ...

    2018-04-17

    A reflective all-sky imaging system has been built using a long-wave infrared microbolometer camera and a reflective metal sphere. This compact system was developed for measuring spatial and temporal patterns of clouds and their optical depth in support of applications including Earth-space optical communications. The camera is mounted to the side of the reflective sphere to leave the zenith sky unobstructed. The resulting geometric distortion is removed through an angular map derived from a combination of checkerboard-target imaging, geometric ray tracing, and sun-location-based alignment. A tape of high-emissivity material on the side of the reflector acts as a reference thatmore » is used to estimate and remove thermal emission from the metal sphere. In conclusion, once a bias that is under continuing study was removed, sky radiance measurements from the all-sky imager in the 8-14 μm wavelength range agreed to within 0.91 W/(m 2 sr) of measurements from a previously calibrated, lens-based infrared cloud imager over its 110° field of view.« less

  13. High-Resolution Imaging of Selenium in Kidneys: A Localized Selenium Pool Associated with Glutathione Peroxidase 3

    PubMed Central

    Malinouski, Mikalai; Kehr, Sebastian; Finney, Lydia; Vogt, Stefan; Carlson, Bradley A.; Seravalli, Javier; Jin, Richard; Handy, Diane E.; Park, Thomas J.; Loscalzo, Joseph; Hatfield, Dolph L.

    2012-01-01

    Abstract Aim: Recent advances in quantitative methods and sensitive imaging techniques of trace elements provide opportunities to uncover and explain their biological roles. In particular, the distribution of selenium in tissues and cells under both physiological and pathological conditions remains unknown. In this work, we applied high-resolution synchrotron X-ray fluorescence microscopy (XFM) to map selenium distribution in mouse liver and kidney. Results: Liver showed a uniform selenium distribution that was dependent on selenocysteine tRNA[Ser]Sec and dietary selenium. In contrast, kidney selenium had both uniformly distributed and highly localized components, the latter visualized as thin circular structures surrounding proximal tubules. Other parts of the kidney, such as glomeruli and distal tubules, only manifested the uniformly distributed selenium pattern that co-localized with sulfur. We found that proximal tubule selenium localized to the basement membrane. It was preserved in Selenoprotein P knockout mice, but was completely eliminated in glutathione peroxidase 3 (GPx3) knockout mice, indicating that this selenium represented GPx3. We further imaged kidneys of another model organism, the naked mole rat, which showed a diminished uniformly distributed selenium pool, but preserved the circular proximal tubule signal. Innovation: We applied XFM to image selenium in mammalian tissues and identified a highly localized pool of this trace element at the basement membrane of kidneys that was associated with GPx3. Conclusion: XFM allowed us to define and explain the tissue topography of selenium in mammalian kidneys at submicron resolution. Antioxid. Redox Signal. 16, 185–192. PMID:21854231

  14. Lineaments of Texas - possible surface expressions of deep-seated phenomena. Final report

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Woodruff, C.M. Jr.; Caran, S.C.

    1984-04-01

    Lineaments were identified on 51 Landsat images covering Texas and parts of adjacent states in Mexico and the United States. A method of identifying lineaments was designed so that the findings would be consistent, uncomplicated, objective, and reproducible. Lineaments denoted on the Landsat images were traced onto 1:250,000-scale work maps and then rendered cartographically on maps representing each of the 51 Landsat images at a scale of 1:500,000. At this stage more than 31,000 lineaments were identified. It included significant areas outside of Texas. In preparing the final lineament map of Texas at 1:1,000,000-scale from the 1:500,000-scale maps, all featuresmore » that lay outside Texas and repetition among features perceived by individual workers were eliminated. Cultural features were checked for before reducing and cartographically fitting the mosaic of 51 individual map sheets to a single map base. Lineaments that were partly colinear but with different end points were modified into a single lineament trace with the combined length of the two or more colinear lineaments. Each lineament was checked to determine its validity according to our definition. The features were edited again to eliminate processing artifacts within the image itself, as well as representations of cultural features (fencelines, roads, and the like) and geomorphic patterns unrelated to bedrock structure. Thus the more than 31,000 lineaments originally perceived were reduced to the approximately 15,000 presented on the 1:1,000,000 map. Interpretations of the lineaments are presented.« less

  15. Chandra X-Ray Observatory Image of Crab Nebula

    NASA Technical Reports Server (NTRS)

    1999-01-01

    After barely 2 months in space, the Chandra X-Ray Observatory (CXO) took this sturning image of the Crab Nebula, the spectacular remains of a stellar explosion, revealing something never seen before, a brilliant ring around the nebula's heart. The image shows the central pulsar surrounded by tilted rings of high-energy particles that appear to have been flung outward over a distance of more than a light-year from the pulsar. Perpendicular to the rings, jet-like structures produced by high-energy particles blast away from the pulsar. Hubble Space Telescope images have shown moving knots and wisps around the neutron star, and previous x-ray images have shown the outer parts of the jet and hinted at the ring structure. With CXO's exceptional resolution, the jet can be traced all the way in to the neutron star, and the ring pattern clearly appears. The image was made with CXO's Advanced Charge-Coupled Device (CCD) Imaging Spectrometer (ACIS) and High Energy Transmission Grating. The Crab Nebula, easily the most intensively studied object beyond our solar system, has been observed using virtually every astronomical instrument that could see that part of the sky

  16. Numerical Investigation of Pre-detonator Geometries for PDE Applications

    DTIC Science & Technology

    2010-03-01

    pattern will be traced that resembles the scales of a fish. The fishscale pattern is a trace of the high pressure transverse waves. Figure 10 shows a...numerically generated smokefoil record that is created by taking a peak pressure histogram of the transient data set. Each of the fishscale -like diamonds

  17. Simple multispectral imaging approach for determining the transfer of explosive residues in consecutive fingerprints.

    PubMed

    Lees, Heidi; Zapata, Félix; Vaher, Merike; García-Ruiz, Carmen

    2018-07-01

    This novel investigation focused on studying the transfer of explosive residues (TNT, HMTD, PETN, ANFO, dynamite, black powder, NH 4 NO 3 , KNO 3 , NaClO 3 ) in ten consecutive fingerprints to two different surfaces - cotton fabric and polycarbonate plastic - by using multispectral imaging (MSI). Imaging was performed employing a reflex camera in a purpose-built photo studio. Images were processed in MATLAB to select the most discriminating frame - the one that provided the sharpest contrast between the explosive and the material in the red-green-blue (RGB) visible region. The amount of explosive residues transferred in each fingerprint was determined as the number of pixels containing explosive particles. First, the pattern of PETN transfer by ten different persons in successive fingerprints was studied. No significant differences in the pattern of transfer of PETN between subjects were observed, which was also confirmed by multivariate analysis of variance (MANOVA). Then, the transfer of traces of the nine above explosives in ten consecutive fingerprints to cotton fabric and polycarbonate plastic was investigated. The obtained results demonstrated that the amount of explosive residues deposited on successive fingerprints tended to undergo a power or exponential decrease, with the exception of inorganic salts (NH 4 NO 3 , KNO 3 , NaClO 3 ) and ANFO (consists of 90% NH 4 NO 3 ). Copyright © 2018 Elsevier B.V. All rights reserved.

  18. Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Deng, Junjing; Vine, David J.; Chen, Si

    Trace metals play important roles in normal and in disease-causing biological functions. X-ray fluorescence microscopy reveals trace elements with no dependence on binding affinities (unlike with visible light fluorophores) and with improved sensitivity relative to electron probes. However, X-ray fluorescence is not very sensitive for showing the light elements that comprise the majority of cellular material. Here we show that X-ray ptychography can be combined with fluorescence to image both cellular structure and trace element distribution in frozen-hydrated cells at cryogenic temperatures, with high structural and chemical fidelity. Ptychographic reconstruction algorithms deliver phase and absorption contrast images at a resolutionmore » beyond that of the illuminating lens or beam size. Using 5.2-keV X-rays, we have obtained sub-30-nm resolution structural images and ~90-nm-resolution fluorescence images of several elements in frozen-hydrated green algae. Finally, this combined approach offers a way to study the role of trace elements in their structural context.« less

  19. Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae

    DOE PAGES

    Deng, Junjing; Vine, David J.; Chen, Si; ...

    2015-02-24

    Trace metals play important roles in normal and in disease-causing biological functions. X-ray fluorescence microscopy reveals trace elements with no dependence on binding affinities (unlike with visible light fluorophores) and with improved sensitivity relative to electron probes. However, X-ray fluorescence is not very sensitive for showing the light elements that comprise the majority of cellular material. Here we show that X-ray ptychography can be combined with fluorescence to image both cellular structure and trace element distribution in frozen-hydrated cells at cryogenic temperatures, with high structural and chemical fidelity. Ptychographic reconstruction algorithms deliver phase and absorption contrast images at a resolutionmore » beyond that of the illuminating lens or beam size. Using 5.2-keV X-rays, we have obtained sub-30-nm resolution structural images and ~90-nm-resolution fluorescence images of several elements in frozen-hydrated green algae. Finally, this combined approach offers a way to study the role of trace elements in their structural context.« less

  20. Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Deng, Junjing; Vine, David J.; Chen, Si

    Trace metals play important roles in normal and in disease-causing biological functions. X-ray fluorescence microscopy reveals trace elements with no dependence on binding affinities (unlike with visible light fluorophores) and with improved sensitivity relative to electron probes. However, X-ray fluorescence is not very sensitive for showing the light elements that comprise the majority of cellular material. Here we show that X-ray ptychography can be combined with fluorescence to image both cellular structure and trace element distribution in frozen-hydrated cells at cryogenic temperatures, with high structural and chemical fidelity. Ptychographic reconstruction algorithms deliver phase and absorption contrast images at a resolutionmore » beyond that of the illuminating lens or beam size. Using 5.2-keV X-rays, we have obtained sub-30-nm resolution structural images and similar to 90-nm-resolution fluorescence images of several elements in frozen-hydrated green algae. This combined approach offers a way to study the role of trace elements in their structural context.« less

  1. Method for position emission mammography image reconstruction

    DOEpatents

    Smith, Mark Frederick

    2004-10-12

    An image reconstruction method comprising accepting coincidence datat from either a data file or in real time from a pair of detector heads, culling event data that is outside a desired energy range, optionally saving the desired data for each detector position or for each pair of detector pixels on the two detector heads, and then reconstructing the image either by backprojection image reconstruction or by iterative image reconstruction. In the backprojection image reconstruction mode, rays are traced between centers of lines of response (LOR's), counts are then either allocated by nearest pixel interpolation or allocated by an overlap method and then corrected for geometric effects and attenuation and the data file updated. If the iterative image reconstruction option is selected, one implementation is to compute a grid Siddon retracing, and to perform maximum likelihood expectation maiximization (MLEM) computed by either: a) tracing parallel rays between subpixels on opposite detector heads; or b) tracing rays between randomized endpoint locations on opposite detector heads.

  2. An effective noise-suppression technique for surface microseismic data

    USGS Publications Warehouse

    Forghani-Arani, Farnoush; Willis, Mark; Haines, Seth S.; Batzle, Mike; Behura, Jyoti; Davidson, Michael

    2013-01-01

    The presence of strong surface-wave noise in surface microseismic data may decrease the utility of these data. We implement a technique, based on the distinct characteristics that microseismic signal and noise show in the τ‐p domain, to suppress surface-wave noise in microseismic data. Because most microseismic source mechanisms are deviatoric, preprocessing is necessary to correct for the nonuniform radiation pattern prior to transforming the data to the τ‐p domain. We employ a scanning approach, similar to semblance analysis, to test all possible double-couple orientations to determine an estimated orientation that best accounts for the polarity pattern of any microseismic events. We then correct the polarity of the data traces according to this pattern, prior to conducting signal-noise separation in the τ‐p domain. We apply our noise-suppression technique to two surface passive-seismic data sets from different acquisition surveys. The first data set includes a synthetic microseismic event added to field passive noise recorded by an areal receiver array distributed over a Barnett Formation reservoir undergoing hydraulic fracturing. The second data set is field microseismic data recorded by receivers arranged in a star-shaped array, over a Bakken Shale reservoir during a hydraulic-fracturing process. Our technique significantly improves the signal-to-noise ratios of the microseismic events and preserves the waveforms at the individual traces. We illustrate that the enhancement in signal-to-noise ratio also results in improved imaging of the microseismic hypocenter.

  3. New Developments in Hard X-ray Fluorescence Microscopy for In-situ Investigations of Trace Element Distributions in Aqueous Systems of Soil Colloids

    NASA Astrophysics Data System (ADS)

    Gleber, Sophie-Charlotte; Weinhausen, Britta; Köster, Sarah; Ward, Jesse; Vine, David; Finney, Lydia; Vogt, Stefan

    2013-10-01

    The distribution, binding and release of trace elements on soil colloids determine matter transport through the soil matrix, and necessitates an aqueous environment and short length and time scales for their study. However, not many microscopy techniques allow for that. We previously showed hard x-ray fluorescence microscopy capabilities to image aqueous colloidal soil samples [1]. As this technique provides attogram sensitivity for transition elements like Cu, Zn, and other geochemically relevant trace elements at sub micrometer spatial resolution (currently down to 150 nm at 2-ID-E [2]; below 50nm at Bionanoprobe, cf. G.Woloschak et al, this volume) combined with the capability to penetrate tens of micrometer of water, it is ideally suited for imaging the elemental content of soil colloids. To address the question of binding and release processes of trace elements on the surface of soil colloids, we developed a microfluidics based XRF flow cytometer, and expanded the applied methods of hard x-ray fluorescence microscopy towards three dimensional imaging. Here, we show (a) the 2-D imaged distributions of Si, K and Fe on soil colloids of Pseudogley samples; (b) how the trace element distribution is a dynamic, pH-dependent process; and (c) x-ray tomographic applications to render the trace elemental distributions in 3-D. We conclude that the approach presented here shows the remarkable potential to image and quantitate elemental distributions from samles within their natural aqueous microenvironment, particularly important in the environmental, medical, and biological sciences.

  4. Image Tracing: An Analysis of Its Effectiveness in Children's Pictorial Discrimination Learning

    ERIC Educational Resources Information Center

    Levin, Joel R.; And Others

    1977-01-01

    A total of 45 fifth grade students were the subjects of an experiment offering support for a component of learning strategy (memory imagery). Various theoretical explanations of the image-tracing phenomenon are considered, including depth of processing, dual coding and frequency. (MS)

  5. Neural Similarity Between Encoding and Retrieval is Related to Memory Via Hippocampal Interactions

    PubMed Central

    Ritchey, Maureen; Wing, Erik A.; LaBar, Kevin S.; Cabeza, Roberto

    2013-01-01

    A fundamental principle in memory research is that memory is a function of the similarity between encoding and retrieval operations. Consistent with this principle, many neurobiological models of declarative memory assume that memory traces are stored in cortical regions, and the hippocampus facilitates the reactivation of these traces during retrieval. The present investigation tested the novel prediction that encoding–retrieval similarity can be observed and related to memory at the level of individual items. Multivariate representational similarity analysis was applied to functional magnetic resonance imaging data collected during encoding and retrieval of emotional and neutral scenes. Memory success tracked fluctuations in encoding–retrieval similarity across frontal and posterior cortices. Importantly, memory effects in posterior regions reflected increased similarity between item-specific representations during successful recognition. Mediation analyses revealed that the hippocampus mediated the link between cortical similarity and memory success, providing crucial evidence for hippocampal–cortical interactions during retrieval. Finally, because emotional arousal is known to modulate both perceptual and memory processes, similarity effects were compared for emotional and neutral scenes. Emotional arousal was associated with enhanced similarity between encoding and retrieval patterns. These findings speak to the promise of pattern similarity measures for evaluating memory representations and hippocampal–cortical interactions. PMID:22967731

  6. Trace-element patterns of fibrous and monocrystalline diamonds: Insights into mantle fluids

    NASA Astrophysics Data System (ADS)

    Rege, S.; Griffin, W. L.; Pearson, N. J.; Araujo, D.; Zedgenizov, D.; O'Reilly, S. Y.

    2010-08-01

    During their growth diamonds may trap micron-scale inclusions of the fluids from which they grew, and these "time capsules" provide insights into the metasomatic processes that have modified the subcontinental lithospheric mantle. LAM-ICPMS analysis of trace elements in > 500 fibrous and monocrystalline diamonds worldwide has been used to understand the nature of these fluids. Analyses of fibrous diamonds define two general types of pattern, a "fibrous-high" (FH) one with high contents of LREE, Ba and K, and a "fibrous-low" (FL) pattern characterized by depletion in LREE/MREE, Ba and K, negative anomalies in Sr and Y, and subchondritic Zr/Hf and Nb/Ta. Both types may be found in fibrous diamonds from single deposits, and in three Yakutian pipes some diamonds show abrupt transitions from inclusion-rich cores with FH patterns to clearer rims with FL patterns. Most monocrystalline diamonds show FL-type patterns, but some have patterns that resemble those of FH fibrous diamonds. Peridotitic and eclogitic monocrystalline diamonds may show either patterns with relatively flat REE, or patterns with more strongly depleted LREE. Kimberlites that contain peridotitic diamonds with "high" patterns also contain eclogitic diamonds with "high" patterns. Strong similarities in the patterns of these two groups of diamonds may suggest high fluid/rock ratios. Many diamonds of the "superdeep" paragenesis have trace-element patterns similar to those of other monocrystalline diamonds. This may be evidence that the trace-element compositions of deep-seated fluids are generally similar to those that form diamonds in the subcontinental lithospheric mantle. The element fractionations observed between the FH and FL patterns are consistent with the immiscible separation of a silicic fluid from a carbonatite-silicate fluid, leaving a residual carbonatitic fluid strongly enriched in LREE, Ba and alkalies. This model would suggest that most monocrystalline diamonds crystallized from the more silicic fraction. Comparison with studies of single fluid inclusions in fibrous diamonds suggests that the FH patterns reflect trapped inclusions of high-Mg and low-Mg carbonatitic high-density fluids. In terms of the rock-forming elements, the fluids that precipitated the rims of some fibrous diamonds (FL pattern) and most monocrystalline diamonds are broadly similar to some hydro-silicic high-density fluids found in fibrous diamonds. However, there are still significant differences between the trace-element patterns of most monocrystalline diamonds and known high-density fluids, and further research is required to understand the formation and growth of these diamonds.

  7. Sediment evidence of industrial leakage-induced asynchronous changes in polycyclic aromatic hydrocarbons and trace metals from a sub-trophic lake, southwest China.

    PubMed

    Wang, Lei; Chen, Guangjie; Kang, Wengang; Wang, Jiaoyuan; Liu, Yuanyuan; Chen, Li

    2018-05-01

    It has been well established that regional patterns of atmosphere-borne polycyclic aromatic hydrocarbons (PAHs) and trace metals were predominantly associated with the trajectory of socio-economic development; however, they could be potentially modulated by anthropogenic fingerprint of local sources such as industrial spill. Here, we established historical pollution data of both PAHs and trace metals from a well-dated sediment core from Yangzong Lake of Southwest China, which experienced a severe tailing leakage accident derived from a zinc concentrate smelting plant in 2007, aiming to evaluate the heterogeneity in their temporal trajectories and their sources of contamination in the context of regional deposition patterns. Sedimentary records show that the concentrations and fluxes of both PAHs and trace metals remained a consistently low level before the 1950s. An increasing trend and the synchronous changes of both PAHs and trace metals during ~ 1950-2002 were well consistent with the temporal pattern of socio-economic development in western China, with coal combustion and smelting industries as the main sources of contamination in this region. However, arsenic (As) and PAHs exhibited a concurrent spike for the period of ~ 2007-2013, contrasting strongly to the regional pattern of these contaminants. The modern concentrations of As revealed a 5- to 14-fold increase over the pre-1950 level, with the contemporary concentrations of PAHs rising by ~ 10-14 times. The sediment records reveal that local fingerprints of smelting activities in the catchment of Yangzong Lake have overridden the temporary pattern of regional atmosphere-borne As and PAHs over the last decade. This highlights the important role of local pollution sources in modulating or even overriding the regional pattern of anthropogenic contamination in highly impacted systems.

  8. Silicon micro-mold and method for fabrication

    DOEpatents

    Morales, Alfredo M.

    2005-01-11

    The present invention describes a method for rapidly fabricating a robust 3-dimensional silicon micro-mold for use in preparing complex metal micro-components. The process begins by depositing a conductive metal layer onto one surface of a silicon wafer. A thin photoresist and a standard lithographic mask are then used to transfer a trace image pattern onto the opposite surface of the wafer by exposing and developing the resist. The exposed portion of the silicon substrate is anisotropically etched through the wafer thickness down to conductive metal layer to provide an etched pattern consisting of a series of rectilinear channels and recesses in the silicon which serve as the silicon micro-mold. Microcomponents are prepared with this mold by first filling the mold channels and recesses with a metal deposit, typically by electroplating, and then removing the silicon micro-mold by chemical etching.

  9. Silicon micro-mold

    DOEpatents

    Morales, Alfredo M [Livermore, CA

    2006-10-24

    The present invention describes a method for rapidly fabricating a robust 3-dimensional silicon-mold for use in preparing complex metal micro-components. The process begins by depositing a conductive metal layer onto one surface of a silicon wafer. A thin photoresist and a standard lithographic mask are then used to transfer a trace image pattern onto the opposite surface of the wafer by exposing and developing the resist. The exposed portion of the silicon substrate is anisotropically etched through the wafer thickness down to conductive metal layer to provide an etched pattern consisting of a series of rectilinear channels and recesses in the silicon which serve as the silicon micro-mold. Microcomponents are prepared with this mold by first filling the mold channels and recesses with a metal deposit, typically by electroplating, and then removing the silicon micro-mold by chemical etching.

  10. Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish

    PubMed Central

    Pan, Y. Albert; Freundlich, Tom; Weissman, Tamily A.; Schoppik, David; Wang, X. Cindy; Zimmerman, Steve; Ciruna, Brian; Sanes, Joshua R.; Lichtman, Jeff W.; Schier, Alexander F.

    2013-01-01

    Advances in imaging and cell-labeling techniques have greatly enhanced our understanding of developmental and neurobiological processes. Among vertebrates, zebrafish is uniquely suited for in vivo imaging owing to its small size and optical translucency. However, distinguishing and following cells over extended time periods remains difficult. Previous studies have demonstrated that Cre recombinase-mediated recombination can lead to combinatorial expression of spectrally distinct fluorescent proteins (RFP, YFP and CFP) in neighboring cells, creating a ‘Brainbow’ of colors. The random combination of fluorescent proteins provides a way to distinguish adjacent cells, visualize cellular interactions and perform lineage analyses. Here, we describe Zebrabow (Zebrafish Brainbow) tools for in vivo multicolor imaging in zebrafish. First, we show that the broadly expressed ubi:Zebrabow line provides diverse color profiles that can be optimized by modulating Cre activity. Second, we find that colors are inherited equally among daughter cells and remain stable throughout embryonic and larval stages. Third, we show that UAS:Zebrabow lines can be used in combination with Gal4 to generate broad or tissue-specific expression patterns and facilitate tracing of axonal processes. Fourth, we demonstrate that Zebrabow can be used for long-term lineage analysis. Using the cornea as a model system, we provide evidence that embryonic corneal epithelial clones are replaced by large, wedge-shaped clones formed by centripetal expansion of cells from the peripheral cornea. The Zebrabow tool set presented here provides a resource for next-generation color-based anatomical and lineage analyses in zebrafish. PMID:23757414

  11. Traces of Drosophila Memory

    PubMed Central

    Davis, Ronald L.

    2012-01-01

    Summary Studies using functional cellullar imaging of living flies have identified six memory traces that form in the olfactory nervous system after conditioning with odors. These traces occur in distinct nodes of the olfactory nervous system, form and disappear across different windows of time, and are detected in the imaged neurons as increased calcium influx or synaptic release in response to the conditioned odor. Three traces form at, or near acquisition and co-exist with short-term behavioral memory. One trace forms with a delay after learning and co-exists with intermediate-term behavioral memory. Two traces form many hours after acquisition and co-exist with long-term behavioral memory. The transient memory traces may support behavior across the time-windows of their existence. The experimental approaches for dissecting memory formation in the fly, ranging from the molecular to the systems, make it an ideal system for dissecting the logic by which the nervous system organizes and stores different temporal forms of memory. PMID:21482352

  12. Can We Trace "Arbitrary" Rays to Locate an Image Formed by a Thin Lens?

    ERIC Educational Resources Information Center

    Suppapittayaporn, Decha; Panijpan, Bhinyo; Emarat, Narumon

    2010-01-01

    After learning how to trace the principal rays [Fig. 1(i)] through a thin lens in order to form the image in the conventional way, students sometimes ask whether it is possible to use other rays emanating from the object to form exactly the same image--for example, the two arbitrary rays shown in Fig. 1(ii). The answer is a definite yes, and this…

  13. Time-resolved imaging of domain pattern destruction and recovery via nonequilibrium magnetization states

    NASA Astrophysics Data System (ADS)

    Wessels, Philipp; Ewald, Johannes; Wieland, Marek; Nisius, Thomas; Vogel, Andreas; Viefhaus, Jens; Meier, Guido; Wilhein, Thomas; Drescher, Markus

    2014-11-01

    The destruction and formation of equilibrium multidomain patterns in permalloy (Ni80Fe20 ) microsquares has been captured using pump-probe x-ray magnetic circular dichroism (XMCD) spectromicroscopy at a new full-field magnetic transmission soft x-ray microscopy endstation with subnanosecond time resolution. The movie sequences show the dynamic magnetization response to intense Oersted field pulses of approximately 200-ps root mean square (rms) duration and the magnetization reorganization to the ground-state domain configuration. The measurements display how a vortex flux-closure magnetization distribution emerges out of a nonequilibrium uniform single-domain state. During the destruction of the initial vortex pattern, we have traced the motion of the central vortex core that is ejected out of the microsquare at high velocities exceeding 1 km/s. A reproducible recovery into a defined final vortex state with stable chirality and polarity could be achieved. Using an additional external bias field, the transient reversal of the square magnetization direction could be monitored and consistently reproduced by micromagnetic simulations.

  14. Infrared photothermal imaging spectroscopy for detection of trace explosives on surfaces.

    PubMed

    Kendziora, Christopher A; Furstenberg, Robert; Papantonakis, Michael; Nguyen, Viet; Byers, Jeff; Andrew McGill, R

    2015-11-01

    We are developing a technique for the standoff detection of trace explosives on relevant substrate surfaces using photothermal infrared (IR) imaging spectroscopy (PT-IRIS). This approach leverages one or more compact IR quantum cascade lasers, which are tuned to strong absorption bands in the analytes and directed to illuminate an area on a surface of interest. An IR focal plane array is used to image the surface and detect increases in thermal emission upon laser illumination. The PT-IRIS signal is processed as a hyperspectral image cube comprised of spatial, spectral, and temporal dimensions as vectors within a detection algorithm. The ability to detect trace analytes at standoff on relevant substrates is critical for security applications but is complicated by the optical and thermal analyte/substrate interactions. This manuscript describes a series of PT-IRIS experimental results and analysis for traces of RDX, TNT, ammonium nitrate, and sucrose on steel, polyethylene, glass, and painted steel panels. We demonstrate detection at surface mass loadings comparable with fingerprint depositions ( 10μg/cm2 to 100μg/cm2) from an area corresponding to a single pixel within the thermal image.

  15. Broadband infrared imaging spectroscopy for standoff detection of trace explosives

    NASA Astrophysics Data System (ADS)

    Kendziora, Christopher A.; Furstenberg, Robert; Papantonakis, Michael; Nguyen, Viet; McGill, R. Andrew

    2016-05-01

    This manuscript describes advancements toward a mobile platform for standoff detection of trace explosives on relevant substrates using broadband infrared spectroscopic imaging. In conjunction with this, we are developing a technology for detection based on photo-thermal infrared (IR) imaging spectroscopy (PT-IRIS). PT-IRIS leverages one or more IR quantum cascade lasers (QCL), tuned to strong absorption bands in the analytes and directed to illuminate an area on a surface of interest. An IR focal plane array is used to image the surface thermal emission upon laser illumination. The PT-IRIS signal is processed as a hyperspectral image cube comprised of spatial, spectral and temporal dimensions as vectors within a detection algorithm. Here we describe methods to increase both sensitivity to trace explosives and selectivity between different analyte types by exploiting a broader spectral range than in previous configurations. Previously we demonstrated PT-IRIS at several meters of standoff distance indoors and in field tests, while operating the lasers below the infrared eye-safe intensity limit (100 mW/cm2). Sensitivity to explosive traces as small as a single 10 μm diameter particle (~1 ng) has been demonstrated.

  16. Epiphytic cryptogams as a source of bioaerosols and trace gases

    NASA Astrophysics Data System (ADS)

    Ruckteschler, Nina; Hrabe de Angelis, Isabella; Zartman, Charles E.; Araùjo, Alessandro; Pöschl, Ulrich; Manzi, Antonio O.; Andreae, Meinrat O.; Pöhlker, Christopher; Weber, Bettina

    2016-04-01

    Cryptogamic covers comprise (cyano-)bacteria, algae, lichens, bryophytes, fungi, and archaea in varying proportions. These organisms do not form flowers, but reproduce by spores or cell cleavage with these reproductive units being dispersed via the atmosphere. As so-called poikilohydric organisms they are unable to regulate their water content, and their physiological activity pattern mainly follows the external water conditions. We hypothesize, that both spore dispersal and the release of trace gases are governed by the moisture patterns of these organisms and thus they could have a greater impact on the atmosphere than previously thought. In order to test this hypothesis, we initiated experiments at the study site Amazonian Tall Tower Observatory (ATTO) in September 2014. We installed microclimate sensors in epiphytic cryptogams at four different heights of a tree to monitor the activity patterns of these organisms. Self-developed moisture probes are used to analyze the water status of the organisms accompanied by light and temperature sensors. The continuously logged data are linked to ongoing measurements of trace gases and particulate bioaerosols to analyze these for the relevance of cryptogams. Here, we are particularly interested in diurnal cycles of coarse mode particles and the atmospheric abundance of fine potassium-rich particles from a currently unknown biogenic source. Based upon the results of this field study we also investigate the bioaerosol and trace gas release patterns of cryptogamic covers under controlled conditions. With this combined approach of field and laboratory experiments we aim to disclose the role of cryptogamic covers in bioaerosol and trace gas release patterns in the Amazonian rainforest.

  17. Crystal structure of bovine Cu,Zn superoxide dismutase at 3 A resolution: chain tracing and metal ligands.

    PubMed Central

    Richardson, J; Thomas, K A; Rubin, B H; Richardson, D C

    1975-01-01

    An electron density map at 3 angstrom resolution has been calculated for Cu2+, Zn2+ superoxide dismutase from bovine erythrocytes, and the course of the main chain has been traced. The dominant structural feature is an 8-stranded barrel of antiparallel beta-pleated sheet. There is one very short helical section and two long loops of non-repetitive structure. The Cu and Zn are bound between the loops and one side of the beta barrel and are about 6 Angstrom apart, with a common histidine ligand. The Cu has four histidine ligands in a somewhat distorted square plane, and the Zn has three histidines and an aspartate in approximately tetrahedral arrangement. The two coppers of a dimer are about 34 Angstrom apart. The two subunits have essentially the same conformation and have an extensive contact area that mainly involves hydrophobic side chain interactions. The overall folding pattern of the polypeptide chain is very similar to that of an immunoglobulin domain. Images PMID:1055410

  18. Steep-dip seismic imaging of the shallow San Andreas Fault near Parkfield

    USGS Publications Warehouse

    Hole, J.A.; Catchings, R.D.; St. Clair, K.C.; Rymer, M.J.; Okaya, D.A.; Carney, B.J.

    2001-01-01

    Seismic reflection and refraction images illuminate the San Andreas Fault to a depth of 1 kilometer. The prestack depth-migrated reflection image contains near-vertical reflections aligned with the active fault trace. The fault is vertical in the upper 0.5 kilometer, then dips about 70° to the southwest to at least 1 kilometer subsurface. This dip reconciles the difference between the computed locations of earthquakes and the surface fault trace. The seismic velocity cross section shows strong lateral variations. Relatively low velocity (10 to 30%), high electrical conductivity, and low density indicate a 1-kilometer-wide vertical wedge of porous sediment or fractured rock immediately southwest of the active fault trace.

  19. Silicification of trace fossils in carbonates; evidence from Permian Kaibab Formation, southwestern Utah

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Whidden, K.J.; Bottjer, D.J.

    Silicification in carbonates, particularly silicified trace fossils, has received relatively little previous study. Chert comprises a significant percentage of the upper Fossil Mountain Member of the Kaibab Formation, a Permian epicontinental limestone. Distribution and origin of this chert were studied from outcrops in southwestern Utah. The origin of much of this chert is believed to be as silicified Thalassinoides burrows. Field evidence for trace fossil silicification includes (1) silicified cylindrical tubes with Y-shaped branching patterns as well as hollow tubes, and (2) polygonal box-work patterns of tubes. In addition, brachiopods, bryozoans, and abundant specimens of the sponge Actinocelia maendrina Finksmore » are also silicified. Recognition of silicified trace fossils in carbonates provides a different approach to the study of early diagenetic silica precipitation. These silicified trace fossils also represent new information on bioturbation in ancient carbonates, a subject that has, until recently, been relatively unstudied.« less

  20. Development of multifunctional nanoparticles towards applications in non-invasive magnetic resonance imaging and axonal tracing.

    PubMed

    Du, Yan; Qin, Yubo; Li, Zizhen; Yang, Xiuying; Zhang, Jingchang; Westwick, Harrison; Tsai, Eve; Cao, Xudong

    2017-12-01

    A multifunctional nanobiomaterial has been developed by deliberately combining functions of superparamagnetism, fluorescence, and axonal tracing into one material. Superparamagnetic iron oxide nanoparticles were first synthesized and coated with a silica layer to prevent emission quenching through core-dye interactions; a fluorescent molecule, fluorescein isothiocyanate, was doped inside second layer of silica shell to improve photo-stability and to enable further thiol functionalization. Subsequently, biotinylated dextran amine, a sensitive axonal tracing reagent, was immobilized on the thiol-functionalized nanoparticle surfaces. The resulting nanoparticles were characterized by transmission electron microscopy, dynamic light scattering, X-ray diffraction, X-ray photoelectron spectroscopy, UV-Vis spectroscopy, magnetic resonance imaging and fluorescence confocal microscopy. In vitro cell experiments using both undifferentiated and differentiated Neuro-2a cells showed that the cells were able to take up the nanoparticles intracellularly and that the nanoparticles showed good biocompatibilities. In summary, this new material demonstrated promising performances for both optical and magnetic resonance imaging modalities, suggesting its promising potentials in applications such as in non-invasive imaging, particularly in neuronal tracing.

  1. Infrared photothermal imaging of trace explosives on relevant substrates

    NASA Astrophysics Data System (ADS)

    Kendziora, Christopher A.; Furstenberg, Robert; Papantonakis, Michael; Nguyen, Viet; Borchert, James; Byers, Jeff; McGill, R. Andrew

    2013-06-01

    We are developing a technique for the stand-off detection of trace explosives on relevant substrate surfaces using photo-thermal infrared (IR) imaging spectroscopy (PT-IRIS). This approach leverages one or more compact IR quantum cascade lasers, tuned to strong absorption bands in the analytes and directed to illuminate an area on a surface of interest. An IR focal plane array is used to image the surface and detect small increases in thermal emission upon laser illumination. The PT-IRIS signal is processed as a hyperspectral image cube comprised of spatial, spectral and temporal dimensions as vectors within a detection algorithm. The ability to detect trace analytes on relevant substrates is critical for stand-off applications, but is complicated by the optical and thermal analyte/substrate interactions. This manuscript describes recent PT-IRIS experimental results and analysis for traces of RDX, TNT, ammonium nitrate (AN) and sucrose on relevant substrates (steel, polyethylene, glass and painted steel panels). We demonstrate that these analytes can be detected on these substrates at relevant surface mass loadings (10 μg/cm2 to 100 μg/cm2) even at the single pixel level.

  2. Chandra's Ultimate Angular Resolution: Studies of the HRC-I Point Spread Function

    NASA Astrophysics Data System (ADS)

    Juda, Michael; Karovska, M.

    2010-03-01

    The Chandra High Resolution Camera (HRC) should provide an ideal imaging match to the High-Resolution Mirror Assembly (HRMA). The laboratory-measured intrinsic resolution of the HRC is 20 microns FWHM. HRC event positions are determined via a centroiding method rather than by using discrete pixels. This event position reconstruction method and any non-ideal performance of the detector electronics can introduce distortions in event locations that, when combined with spacecraft dither, produce artifacts in source images. We compare ray-traces of the HRMA response to "on-axis" observations of AR Lac and Capella as they move through their dither patterns to images produced from filtered event lists to characterize the effective intrinsic PSF of the HRC-I. A two-dimensional Gaussian, which is often used to represent the detector response, is NOT a good representation of the intrinsic PSF of the HRC-I; the actual PSF has a sharper peak and additional structure which will be discussed. This work was supported under NASA contract NAS8-03060.

  3. Genetically targeted 3D visualisation of Drosophila neurons under Electron Microscopy and X-Ray Microscopy using miniSOG

    PubMed Central

    Ng, Julian; Browning, Alyssa; Lechner, Lorenz; Terada, Masako; Howard, Gillian; Jefferis, Gregory S. X. E.

    2016-01-01

    Large dimension, high-resolution imaging is important for neural circuit visualisation as neurons have both long- and short-range patterns: from axons and dendrites to the numerous synapses at terminal endings. Electron Microscopy (EM) is the favoured approach for synaptic resolution imaging but how such structures can be segmented from high-density images within large volume datasets remains challenging. Fluorescent probes are widely used to localise synapses, identify cell-types and in tracing studies. The equivalent EM approach would benefit visualising such labelled structures from within sub-cellular, cellular, tissue and neuroanatomical contexts. Here we developed genetically-encoded, electron-dense markers using miniSOG. We demonstrate their ability in 1) labelling cellular sub-compartments of genetically-targeted neurons, 2) generating contrast under different EM modalities, and 3) segmenting labelled structures from EM volumes using computer-assisted strategies. We also tested non-destructive X-ray imaging on whole Drosophila brains to evaluate contrast staining. This enabled us to target specific regions for EM volume acquisition. PMID:27958322

  4. Photorealistic 3D omni-directional stereo simulator

    NASA Astrophysics Data System (ADS)

    Reiners, Dirk; Cruz-Neira, Carolina; Neumann, Carsten

    2015-03-01

    While a lot of areas in VR have made significant advances, visual rendering in VR is often not quite keeping up with the state of the art. There are many reasons for this, but one way to alleviate some of the issues is by using ray tracing instead of rasterization for image generation. Contrary to popular belief, ray tracing is a realistic, competitive technology nowadays. This paper looks at the pros and cons of using ray tracing and demonstrates the feasibility of employing it using the example of a helicopter flight simulator image generator.

  5. Is the Linear Mode Conversion Theory Viable for Generating Kilometric Continuum?

    NASA Technical Reports Server (NTRS)

    Boardsen, Scott A.; Green, James L.; Hashimoto, K.; Gallagher, Dennis L.; Webb, P. A.

    2006-01-01

    Kilometric Continuum (KC) usually exhibits a complicated banded radiation pattern observed in frequency time spectrograms. Can the number of bands, the frequency range over which the bands are observed, and their time variation be explained with Linear Mode Conversion Theory (LMCT) using realistic plasmapause models and Extreme Ultraviolet (EUV) plasmaspheric observations? In this paper we compare KC observations with simulated frequency emission bands based on LMCT for a number of cases. In LMCT the allowed frequency range across the equatorial plasmapause is restricted to frequencies much greater than the electron cyclotron frequency (fce) and less than the maximum plasma frequency in this region. Fce also determines the number of allowed bands in this range. Is the observed frequency range and number of bands consistent with the predications of LMCT? Can irregularities in the shape of plasmaspheric structures like notches be observed in the time variations of KC emissions? We will investigate these and other questions. Simulated radiation patterns will be generated by ray tracing calculations in the L-O mode from the radio window at the near equatorial plasmapause. The KC observations used in this study are from the Plasma Wave Instrument on the Geotail spacecraft and from the Radio Plasma Imager on the IMAGE spacecraft. The plasmasphere and plasmapause will be derived either from plasmasphere simulations, from images by the EUV imager on the IMAGE spacecraft, and by using empirical models. In situ plasma density measurements from a number of spacecraft will also be used in order to reconstruct the plasmasphere for these case studies.

  6. The Compact Microimaging Spectrometer (CMIS): A New Tool for In-Situ Planetary Science

    NASA Technical Reports Server (NTRS)

    Armstrong, J. C.; Sellar, R. G.

    2004-01-01

    In-situ identification of trace minerals, ices, or organics in planetary samples may be difficult with panchromatic microscopic imagery and spot spectroscopy. The panchromatic imagery acquired by a microscopic imager provides morphological information and albedo, but these are generally insufficient for unambiguous identification. The spatially-averaged spectra acquired by a nonimaging ( point- or spot- ) spectrometer may enable identification of the major components but identification of unknown trace components is difficult at best. With our Compact Micro-Imaging Spectrometer (CMIS), however, we acquire spectroscopic data in an imaging format at microscopic scales. The distinct spectra of individual grains, provided by our approach, make detection and identification possible even for trace components in regolith or heterogeneous samples.

  7. Surface scanning through a cylindrical tank of coupling fluid for clinical microwave breast imaging exams

    PubMed Central

    Pallone, Matthew J.; Meaney, Paul M.; Paulsen, Keith D.

    2012-01-01

    Purpose: Microwave tomographic image quality can be improved significantly with prior knowledge of the breast surface geometry. The authors have developed a novel laser scanning system capable of accurately recovering surface renderings of breast-shaped phantoms immersed within a cylindrical tank of coupling fluid which resides completely external to the tank (and the aqueous environment) and overcomes the challenges associated with the optical distortions caused by refraction from the air, tank wall, and liquid bath interfaces. Methods: The scanner utilizes two laser line generators and a small CCD camera mounted concentrically on a rotating gantry about the microwave imaging tank. Various calibration methods were considered for optimizing the accuracy of the scanner in the presence of the optical distortions including traditional ray tracing and image registration approaches. In this paper, the authors describe the construction and operation of the laser scanner, compare the efficacy of several calibration methods—including analytical ray tracing and piecewise linear, polynomial, locally weighted mean, and thin-plate-spline (TPS) image registrations—and report outcomes from preliminary phantom experiments. Results: The results show that errors in calibrating camera angles and position prevented analytical ray tracing from achieving submillimeter accuracy in the surface renderings obtained from our scanner configuration. Conversely, calibration by image registration reliably attained mean surface errors of less than 0.5 mm depending on the geometric complexity of the object scanned. While each of the image registration approaches outperformed the ray tracing strategy, the authors found global polynomial methods produced the best compromise between average surface error and scanner robustness. Conclusions: The laser scanning system provides a fast and accurate method of three dimensional surface capture in the aqueous environment commonly found in microwave breast imaging. Optical distortions imposed by the imaging tank and coupling bath diminished the effectiveness of the ray tracing approach; however, calibration through image registration techniques reliably produced scans of submillimeter accuracy. Tests of the system with breast-shaped phantoms demonstrated the successful implementation of the scanner for the intended application. PMID:22755695

  8. Virtual Ray Tracing as a Conceptual Tool for Image Formation in Mirrors and Lenses

    ERIC Educational Resources Information Center

    Heikkinen, Lasse; Savinainen, Antti; Saarelainen, Markku

    2016-01-01

    The ray tracing method is widely used in teaching geometrical optics at the upper secondary and university levels. However, using simple and straightforward examples may lead to a situation in which students use the model of ray tracing too narrowly. Previous studies show that students seem to use the ray tracing method too concretely instead of…

  9. New insights into trace element wet deposition in the Himalayas: amounts, seasonal patterns, and implications.

    PubMed

    Cong, Zhiyuan; Kang, Shichang; Zhang, Yulan; Gao, Shaopeng; Wang, Zhongyan; Liu, Bin; Wan, Xin

    2015-02-01

    Our research provides the first complete year-long dataset of wet deposition of trace elements in the high Himalayas based on a total of 42 wet deposition events on the northern slope of Mt. Qomolangma (Everest). Except for typical crustal elements (Al, Fe, and Mn), the concentration level of most trace elements (Sc, V, Cr, Co, Ni, Cu, Zn, As, Mo, Cd, Sn, Cs, Pb, Bi, and U) are generally comparable to those preserved in snow pits and ice cores from the nearby East Rongbuk Glacier. Cadmium was the element most affected by anthropogenic emissions. No pronounced seasonal variations are observed for most trace elements despite different transport pathways. In our study, the composition of wet precipitation reflects a regional background condition and is not clearly related to specific source regions. For the trace element record from ice cores and snow pits in the Himalayas, it could be deduced that the pronounced seasonal patterns were caused by the dry deposition of trace elements (aerosols) during their long exposure to the atmosphere after precipitation events. Our findings are of value for the understanding of the trace element deposition mechanisms in the Himalayas.

  10. An analysis of fracture trace patterns in areas of flat-lying sedimentary rocks for the detection of buried geologic structure. [Kansas and Texas

    NASA Technical Reports Server (NTRS)

    Podwysocki, M. H.

    1974-01-01

    Two study areas in a cratonic platform underlain by flat-lying sedimentary rocks were analyzed to determine if a quantitative relationship exists between fracture trace patterns and their frequency distributions and subsurface structural closures which might contain petroleum. Fracture trace lengths and frequency (number of fracture traces per unit area) were analyzed by trend surface analysis and length frequency distributions also were compared to a standard Gaussian distribution. Composite rose diagrams of fracture traces were analyzed using a multivariate analysis method which grouped or clustered the rose diagrams and their respective areas on the basis of the behavior of the rays of the rose diagram. Analysis indicates that the lengths of fracture traces are log-normally distributed according to the mapping technique used. Fracture trace frequency appeared higher on the flanks of active structures and lower around passive reef structures. Fracture trace log-mean lengths were shorter over several types of structures, perhaps due to increased fracturing and subsequent erosion. Analysis of rose diagrams using a multivariate technique indicated lithology as the primary control for the lower grouping levels. Groupings at higher levels indicated that areas overlying active structures may be isolated from their neighbors by this technique while passive structures showed no differences which could be isolated.

  11. White-Light Observations of Major Flares Compared to Total Solar Irradiance and Short-Wavelength Observations

    NASA Astrophysics Data System (ADS)

    Petrie, Gordon; Kopp, Greg; Harvey, J. W.

    2014-06-01

    The NSO’s GONG network produces “white light” (WL) continuum intensity images from one-minute integrations averaged across a 0. Å wide band pass centered at 676 Å at one minute cadence using six sites worldwide. Clear WL signatures of solar flares are present in GONG intensity data for only the largest flares because of low spatial resolution (2.5 arcsec pixel size). For six major flares (GOES class X6.5 - X28) observed by GONG, we compare integrated GONG full-disk WL intensity curves with SORCE/TIM total solar irradiance (TSI) measurements. Distinctive p-mode signatures are evident in both GONG and SORCE time series, though the correlation between GONG and SORCE data varies from flare to flare. In some cases a clear TSI peak and an interruption of the GONG p-mode pattern accompany the flare. The flare signature is generally weaker in the GONG data, suggesting that most of the TIM flare signal arises from wavelengths shorter than the GONG band pass. The flare kernels nevertheless are clear and last many minutes in the spatially resolved GONG image time series. We also compare the GONG active region intensity observations with shorter-wavelength data. In one case observed by TRACE, the GONG and TRACE WL curves are very similar and the TRACE 160 Å curve shows a significant precursor and a long tail. In most cases the GONG WL and RHESSI 25-100 keV counts appear well correlated in time. This work utilizes GONG data obtained by the NSO Integrated Synoptic Program (NISP), managed by the National Solar Observatory, which is operated by AURA, Inc. under a cooperative agreement with the National Science Foundation.

  12. Synchrotron nanoscopy imaging study of scalp hair in breast cancer patients and healthy individuals: Difference in medulla loss and cortical membrane enhancements.

    PubMed

    Han, Sung-Mi; Chikawa, Jun-Ichi; Jeon, Jae-Kun; Hwang, Min-Young; Lim, Jun; Jeong, Young-Ju; Park, Sung-Hwan; Kim, Hong-Tae; Jheon, Sanghoon; Kim, Jong-Ki

    2016-01-01

    Nanoscopic synchrotron X-ray imaging was performed on scalp hair samples of patients with breast cancer and healthy individuals to investigate any structural differences as diagnostic tool. Hair strands were divided into 2-3 segments along the strands from root to tip, followed by imaging either in projection or in CT scanning with a monochromatic 6.78-keV X-ray using zone-plate optics with a resolving power of 60 nm. All the examined cancer hairs exhibited medulla loss with cancer stage-dependent pattern; complete loss, discontinuous or trace along the strands. In contrast, medullas were well retained without complete loss in the healthy hair. In the CT-scanned axial images, the cortical spindle compartments had no contrast in the healthy hair, but appeared hypointense in contrast to the surrounding hyperintense cortical membrane complex in the cancer hair. In conclusion, observation of medulla loss and cortical membrane enhancements in the hair strands of breast cancer patients demonstrated structural variations in the cancer hair, providing a new platform for further synchrotron X-ray imaging study of screening breast cancer patients. © 2015 Wiley Periodicals, Inc.

  13. Prospective Out-of-ecliptic White-light Imaging of Interplanetary Corotating Interaction Regions at Solar Maximum

    NASA Astrophysics Data System (ADS)

    Xiong, Ming; Davies, Jackie A.; Li, Bo; Yang, Liping; Liu, Ying D.; Xia, Lidong; Harrison, Richard A.; Keiji, Hayashi; Li, Huichao

    2017-07-01

    Interplanetary corotating interaction regions (CIRs) can be remotely imaged in white light (WL), as demonstrated by the Solar Mass Ejection Imager (SMEI) on board the Coriolis spacecraft and Heliospheric Imagers (HIs) on board the twin Solar TErrestrial RElations Observatory (STEREO) spacecraft. The interplanetary WL intensity, due to Thomson scattering of incident sunlight by free electrons, is jointly determined by the 3D distribution of electron number density and line-of-sight (LOS) weighting factors of the Thomson-scattering geometry. The 2D radiance patterns of CIRs in WL sky maps look very different from different 3D viewpoints. Because of the in-ecliptic locations of both the STEREO and Coriolis spacecraft, the longitudinal dimension of interplanetary CIRs has, up to now, always been integrated in WL imagery. To synthesize the WL radiance patterns of CIRs from an out-of-ecliptic (OOE) vantage point, we perform forward magnetohydrodynamic modeling of the 3D inner heliosphere during Carrington Rotation CR1967 at solar maximum. The mixing effects associated with viewing 3D CIRs are significantly minimized from an OOE viewpoint. Our forward modeling results demonstrate that OOE WL imaging from a latitude greater than 60° can (1) enable the garden-hose spiral morphology of CIRs to be readily resolved, (2) enable multiple coexisting CIRs to be differentiated, and (3) enable the continuous tracing of any interplanetary CIR back toward its coronal source. In particular, an OOE view in WL can reveal where nascent CIRs are formed in the extended corona and how these CIRs develop in interplanetary space. Therefore, a panoramic view from a suite of wide-field WL imagers in a solar polar orbit would be invaluable in unambiguously resolving the large-scale longitudinal structure of CIRs in the 3D inner heliosphere.

  14. The New Maia Detector System: Methods For High Definition Trace Element Imaging Of Natural Material

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ryan, C. G.; School of Physics, University of Melbourne, Parkville VIC; CODES Centre of Excellence, University of Tasmania, Hobart TAS

    2010-04-06

    Motivated by the need for megapixel high definition trace element imaging to capture intricate detail in natural material, together with faster acquisition and improved counting statistics in elemental imaging, a large energy-dispersive detector array called Maia has been developed by CSIRO and BNL for SXRF imaging on the XFM beamline at the Australian Synchrotron. A 96 detector prototype demonstrated the capacity of the system for real-time deconvolution of complex spectral data using an embedded implementation of the Dynamic Analysis method and acquiring highly detailed images up to 77 M pixels spanning large areas of complex mineral sample sections.

  15. The New Maia Detector System: Methods For High Definition Trace Element Imaging Of Natural Material

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ryan, C.G.; Siddons, D.P.; Kirkham, R.

    2010-05-25

    Motivated by the need for megapixel high definition trace element imaging to capture intricate detail in natural material, together with faster acquisition and improved counting statistics in elemental imaging, a large energy-dispersive detector array called Maia has been developed by CSIRO and BNL for SXRF imaging on the XFM beamline at the Australian Synchrotron. A 96 detector prototype demonstrated the capacity of the system for real-time deconvolution of complex spectral data using an embedded implementation of the Dynamic Analysis method and acquiring highly detailed images up to 77 M pixels spanning large areas of complex mineral sample sections.

  16. Deep learning and shapes similarity for joint segmentation and tracing single neurons in SEM images

    NASA Astrophysics Data System (ADS)

    Rao, Qiang; Xiao, Chi; Han, Hua; Chen, Xi; Shen, Lijun; Xie, Qiwei

    2017-02-01

    Extracting the structure of single neurons is critical for understanding how they function within the neural circuits. Recent developments in microscopy techniques, and the widely recognized need for openness and standardization provide a community resource for automated reconstruction of dendritic and axonal morphology of single neurons. In order to look into the fine structure of neurons, we use the Automated Tape-collecting Ultra Microtome Scanning Electron Microscopy (ATUM-SEM) to get images sequence of serial sections of animal brain tissue that densely packed with neurons. Different from other neuron reconstruction method, we propose a method that enhances the SEM images by detecting the neuronal membranes with deep convolutional neural network (DCNN) and segments single neurons by active contour with group shape similarity. We joint the segmentation and tracing together and they interact with each other by alternate iteration that tracing aids the selection of candidate region patch for active contour segmentation while the segmentation provides the neuron geometrical features which improve the robustness of tracing. The tracing model mainly relies on the neuron geometrical features and is updated after neuron being segmented on the every next section. Our method enables the reconstruction of neurons of the drosophila mushroom body which is cut to serial sections and imaged under SEM. Our method provides an elementary step for the whole reconstruction of neuronal networks.

  17. Non-invasive detection of superimposed latent fingerprints and inter-ridge trace evidence by infrared spectroscopic imaging.

    PubMed

    Bhargava, Rohit; Perlman, Rebecca Schwartz; Fernandez, Daniel C; Levin, Ira W; Bartick, Edward G

    2009-08-01

    Current latent print and trace evidence collecting technologies are usually invasive and can be destructive to the original deposits. We describe a non-invasive vibrational spectroscopic approach that yields latent fingerprints that are overlaid on top of one another or that may contain trace evidence that needs to be distinguished from the print. Because of the variation in the chemical composition distribution within the fingerprint, we demonstrate that linear unmixing applied to the spectral content of the data can be used to provide images that reveal superimposed fingerprints. In addition, we demonstrate that the chemical composition of the trace evidence located in the region of the print can potentially be identified by its infrared spectrum. Thus, trace evidence found at a crime scene that previously could not be directly related to an individual, now has the potential to be directly related by its presence in the individual-identifying fingerprints.

  18. Optimization and performance evaluation of a conical mirror based fluorescence molecular tomography imaging system

    NASA Astrophysics Data System (ADS)

    Zhao, Yue; Zhang, Wei; Zhu, Dianwen; Li, Changqing

    2016-03-01

    We performed numerical simulations and phantom experiments with a conical mirror based fluorescence molecular tomography (FMT) imaging system to optimize its performance. With phantom experiments, we have compared three measurement modes in FMT: the whole surface measurement mode, the transmission mode, and the reflection mode. Our results indicated that the whole surface measurement mode performed the best. Then, we applied two different neutral density (ND) filters to improve the measurement's dynamic range. The benefits from ND filters are not as much as predicted. Finally, with numerical simulations, we have compared two laser excitation patterns: line and point. With the same excitation position number, we found that the line laser excitation had slightly better FMT reconstruction results than the point laser excitation. In the future, we will implement Monte Carlo ray tracing simulations to calculate multiple reflection photons, and create a look-up table accordingly for calibration.

  19. Advanced GPR imaging of sedimentary features: integrated attribute analysis applied to sand dunes

    NASA Astrophysics Data System (ADS)

    Zhao, Wenke; Forte, Emanuele; Fontolan, Giorgio; Pipan, Michele

    2018-04-01

    We evaluate the applicability and the effectiveness of integrated GPR attribute analysis to image the internal sedimentary features of the Piscinas Dunes, SW Sardinia, Italy. The main objective is to explore the limits of GPR techniques to study sediment-bodies geometry and to provide a non-invasive high-resolution characterization of the different subsurface domains of dune architecture. On such purpose, we exploit the high-quality Piscinas data-set to extract and test different attributes of the GPR trace. Composite displays of multi-attributes related to amplitude, frequency, similarity and textural features are displayed with overlays and RGB mixed models. A multi-attribute comparative analysis is used to characterize different radar facies to better understand the characteristics of internal reflection patterns. The results demonstrate that the proposed integrated GPR attribute analysis can provide enhanced information about the spatial distribution of sediment bodies, allowing an enhanced and more constrained data interpretation.

  20. OceanRoute: Vessel Mobility Data Processing and Analyzing Model Based on MapReduce

    NASA Astrophysics Data System (ADS)

    Liu, Chao; Liu, Yingjian; Guo, Zhongwen; Jing, Wei

    2018-06-01

    The network coverage is a big problem in ocean communication, and there is no low-cost solution in the short term. Based on the knowledge of Mobile Delay Tolerant Network (MDTN), the mobility of vessels can create the chances of end-to-end communication. The mobility pattern of vessel is one of the key metrics on ocean MDTN network. Because of the high cost, few experiments have focused on research of vessel mobility pattern for the moment. In this paper, we study the traces of more than 4000 fishing and freight vessels. Firstly, to solve the data noise and sparsity problem, we design two algorithms to filter the noise and complement the missing data based on the vessel's turning feature. Secondly, after studying the traces of vessels, we observe that the vessel's traces are confined by invisible boundary. Thirdly, through defining the distance between traces, we design MR-Similarity algorithm to find the mobility pattern of vessels. Finally, we realize our algorithm on cluster and evaluate the performance and accuracy. Our results can provide the guidelines on design of data routing protocols on ocean MDTN.

  1. Ray tracing analysis of overlapping objects in refraction contrast imaging.

    PubMed

    Hirano, Masatsugu; Yamasaki, Katsuhito; Okada, Hiroshi; Sakurai, Takashi; Kondoh, Takeshi; Katafuchi, Tetsuro; Sugimura, Kazuro; Kitazawa, Sohei; Kitazawa, Riko; Maeda, Sakan; Tamura, Shinichi

    2005-08-01

    We simulated refraction contrast imaging in overlapping objects using the ray tracing method. The easiest case, in which two columnar objects (blood vessels) with a density of 1.0 [g/cm3], run at right angles in air, was calculated. For absorption, we performed simulation using the Snell law adapted to the object's boundary. A pair of bright and dark spot results from the interference of refracted X-rays where the blood vessels crossed. This has the possibility of increasing the visibility of the image.

  2. Distance measurement based on light field geometry and ray tracing.

    PubMed

    Chen, Yanqin; Jin, Xin; Dai, Qionghai

    2017-01-09

    In this paper, we propose a geometric optical model to measure the distances of object planes in a light field image. The proposed geometric optical model is composed of two sub-models based on ray tracing: object space model and image space model. The two theoretic sub-models are derived on account of on-axis point light sources. In object space model, light rays propagate into the main lens and refract inside it following the refraction theorem. In image space model, light rays exit from emission positions on the main lens and subsequently impinge on the image sensor with different imaging diameters. The relationships between imaging diameters of objects and their corresponding emission positions on the main lens are investigated through utilizing refocusing and similar triangle principle. By combining the two sub-models together and tracing light rays back to the object space, the relationships between objects' imaging diameters and corresponding distances of object planes are figured out. The performance of the proposed geometric optical model is compared with existing approaches using different configurations of hand-held plenoptic 1.0 cameras and real experiments are conducted using a preliminary imaging system. Results demonstrate that the proposed model can outperform existing approaches in terms of accuracy and exhibits good performance at general imaging range.

  3. Information mining in remote sensing imagery

    NASA Astrophysics Data System (ADS)

    Li, Jiang

    The volume of remotely sensed imagery continues to grow at an enormous rate due to the advances in sensor technology, and our capability for collecting and storing images has greatly outpaced our ability to analyze and retrieve information from the images. This motivates us to develop image information mining techniques, which is very much an interdisciplinary endeavor drawing upon expertise in image processing, databases, information retrieval, machine learning, and software design. This dissertation proposes and implements an extensive remote sensing image information mining (ReSIM) system prototype for mining useful information implicitly stored in remote sensing imagery. The system consists of three modules: image processing subsystem, database subsystem, and visualization and graphical user interface (GUI) subsystem. Land cover and land use (LCLU) information corresponding to spectral characteristics is identified by supervised classification based on support vector machines (SVM) with automatic model selection, while textural features that characterize spatial information are extracted using Gabor wavelet coefficients. Within LCLU categories, textural features are clustered using an optimized k-means clustering approach to acquire search efficient space. The clusters are stored in an object-oriented database (OODB) with associated images indexed in an image database (IDB). A k-nearest neighbor search is performed using a query-by-example (QBE) approach. Furthermore, an automatic parametric contour tracing algorithm and an O(n) time piecewise linear polygonal approximation (PLPA) algorithm are developed for shape information mining of interesting objects within the image. A fuzzy object-oriented database based on the fuzzy object-oriented data (FOOD) model is developed to handle the fuzziness and uncertainty. Three specific applications are presented: integrated land cover and texture pattern mining, shape information mining for change detection of lakes, and fuzzy normalized difference vegetation index (NDVI) pattern mining. The study results show the effectiveness of the proposed system prototype and the potentials for other applications in remote sensing.

  4. Assessing element-specific patterns of bioaccumulation across New England lakes

    PubMed Central

    Ward, Darren M.; Mayes, Brandon; Sturup, Stefan; Folt, Carol L.; Chen, Celia Y.

    2012-01-01

    Little is known about differences among trace elements in patterns of bioaccumulation in freshwater food webs. Our goal was to identify patterns in bioaccumulation of different elements that are large and consistent enough to discern despite variation across lakes. We measured methylmercury (MeHg) and trace element (As, Cd, Hg, Pb, and Zn) concentrations in food web components of seven New England lakes on 3–5 dates per lake, and contrasted patterns of bioaccumulation across lakes, metals and seasons. In each lake, trace element concentrations were compared across trophic levels, including three size fractions of zooplankton, planktivorous fish, and piscivorous fish. The trophic position of each food web component was estimated from N isotope analysis. Trace element concentrations varied widely among taxa, lakes and sampling dates. Yet, we identified four consistent patterns of bioaccumulation that were consistent across lakes: (1) MeHg concentration increased (i.e., was biomagnified) and Pb concentration decreased (i.e., was biodiminished) with increased trophic position. (2) Zinc concentration (as with MeHg) was higher in fish than in zooplankton, but overall variation in Zn concentration (unlike MeHg) was low. (3) Arsenic and Cd concentrations (as with Pb) were lower in fish than in zooplankton, but (unlike Pb) were not significantly correlated with trophic position within zooplankton or fish groups. (4) Average summer concentrations of As, Pb, Hg, and MeHg in zooplankton significantly predicted their concentrations in either planktivorous or piscivorous fish. Our secondary goal was to review sampling approaches in forty-five published studies to determine the extent to which current sampling programs facilitate cross-lake and cross-study comparisons of bioaccumulation. We found that studies include different components of the food web and sample too infrequently to enable strong cross-lake and cross-study comparisons. We discuss sampling strategies that would improve our capacity to identify consistent patterns of bioaccumulation and drivers of elevated trace element concentrations under naturally high levels of variability. PMID:22356871

  5. NVIDIA OptiX ray-tracing engine as a new tool for modelling medical imaging systems

    NASA Astrophysics Data System (ADS)

    Pietrzak, Jakub; Kacperski, Krzysztof; Cieślar, Marek

    2015-03-01

    The most accurate technique to model the X- and gamma radiation path through a numerically defined object is the Monte Carlo simulation which follows single photons according to their interaction probabilities. A simplified and much faster approach, which just integrates total interaction probabilities along selected paths, is known as ray tracing. Both techniques are used in medical imaging for simulating real imaging systems and as projectors required in iterative tomographic reconstruction algorithms. These approaches are ready for massive parallel implementation e.g. on Graphics Processing Units (GPU), which can greatly accelerate the computation time at a relatively low cost. In this paper we describe the application of the NVIDIA OptiX ray-tracing engine, popular in professional graphics and rendering applications, as a new powerful tool for X- and gamma ray-tracing in medical imaging. It allows the implementation of a variety of physical interactions of rays with pixel-, mesh- or nurbs-based objects, and recording any required quantities, like path integrals, interaction sites, deposited energies, and others. Using the OptiX engine we have implemented a code for rapid Monte Carlo simulations of Single Photon Emission Computed Tomography (SPECT) imaging, as well as the ray-tracing projector, which can be used in reconstruction algorithms. The engine generates efficient, scalable and optimized GPU code, ready to run on multi GPU heterogeneous systems. We have compared the results our simulations with the GATE package. With the OptiX engine the computation time of a Monte Carlo simulation can be reduced from days to minutes.

  6. A complete ray-trace analysis of the Mirage toy

    NASA Astrophysics Data System (ADS)

    Adhya, Sriya; Noé, John W.

    2007-06-01

    The `Mirage' (Opti-Gone International) is a well-known optics demonstration (PIRA index number 6A20.35) that uses two opposed concave mirrors to project a real image of a small object into space. We studied image formation in the Mirage by standard 2x2 matrix methods and by exact ray tracing, with particular attention to additional real images that can be observed when the mirror separation is increased beyond one focal length. We find that the three readily observed secondary images correspond to 4, 6, or 8 reflections, respectively, contrary to previous reports.

  7. Positioning the actual interference fringe pattern on the tooth flank in measuring gear tooth flanks by laser interferometry

    NASA Astrophysics Data System (ADS)

    Fang, Suping; Wang, Leijie; Liu, Shiqiao; Komori, Masaharu; Kubo, Aizoh

    2011-05-01

    In measuring form deviation of gear tooth flanks by laser interferometry, the collected interference fringe pattern (IFP) is badly distorted, in the case of shape, relative to the actual tooth flank. Meanwhile, a clear and definite mapping relationship between the collected IFP and the actual tooth flank is indispensable for both transforming phase differences into deviation values and positioning the measurement result on the actual tooth flank. In order to solve these problems, this paper proposes a method using the simulation tooth image as a bridge connecting the actual tooth flank and the collected IFP. The mapping relationship between the simulation tooth image and the actual tooth flank has been obtained by ray tracing methods [Fang et al., Appl. Opt. 49(33), 6409-6415 (2010)]. This paper mainly discusses how to build the relationship between the simulation tooth image and the collected IFP by using a matching algorithm of two characteristic point sets. With the combination of the two above-mentioned assistant mapping relationships, the mapping relationship between the collected IFP and the actual tooth flank can be built; the collected IFP can be positioned on the actual tooth flank. Finally, the proposed method is employed in a measurement of the form deviation of a gear tooth flank and the result proves the feasibility of the proposed method.

  8. Deep-sea Lebensspuren of the Australian continental margins

    NASA Astrophysics Data System (ADS)

    Przeslawski, Rachel; Dundas, Kate; Radke, Lynda; Anderson, Tara J.

    Much of the deep sea comprises soft-sediment habitats dominated by comparatively low abundances of species-rich macrofauna and meiofauna. Although often not observed, these animals bioturbate the sediment during feeding and burrowing, leaving signs of their activities called Lebensspuren ('life traces'). In this study, we use still images to quantify Lebensspuren from the eastern (1921 images, 13 stations, 1300-2200 m depth) and western (1008 images, 11 stations, 1500-4400 m depth) Australian margins using a univariate measure of trace richness and a multivariate measure of Lebensspuren assemblages. A total of 46 Lebensspuren types were identified, including those matching named trace fossils and modern Lebensspuren found elsewhere in the world. Most traces could be associated with waste, crawling, dwellings, organism tests, feeding, or resting, but the origin of 15% of trace types remains unknown. Assemblages were significantly different between the two regions and depth profiles, with five Lebensspuren types accounting for over 95% of the differentiation (ovoid pinnate trace, crater row, spider trace, matchstick trace, mesh trace). Lebensspuren richness showed no strong relationships with depth, total organic carbon, or mud, although there was a positive correlation to chlorin index (i.e., organic freshness) in the eastern margin, with richness increasing with organic freshness. Lebensspuren richness was not related to epifauna either, indicating that epifauna may not be the primary source of Lebensspuren. Despite the abundance and distinctiveness of several traces both in the current and previous studies (e.g., ovoid pinnate, mesh, spider), their origin and distribution remains a mystery. We discuss this and several other considerations in the identification and quantification of Lebensspuren. This study represents the first comprehensive catalogue of deep-sea Lebensspuren in Australian waters and highlights the potential of Lebensspuren as valuable and often untapped deep-sea datasets that can be used for biogeographical, evolutionary, behavioural, and ecological studies.

  9. Characterization of intrabasin faulting and deformation for earthquake hazards in southern Utah Valley, Utah, from high-resolution seismic imaging

    USGS Publications Warehouse

    Stephenson, William J.; Odum, Jack K.; Williams, Robert A.; McBride, John H.; Tomlinson, Iris

    2012-01-01

    We conducted active and passive seismic imaging investigations along a 5.6-km-long, east–west transect ending at the mapped trace of the Wasatch fault in southern Utah Valley. Using two-dimensional (2D) P-wave seismic reflection data, we imaged basin deformation and faulting to a depth of 1.4 km and developed a detailed interval velocity model for prestack depth migration and 2D ground-motion simulations. Passive-source microtremor data acquired at two sites along the seismic reflection transect resolve S-wave velocities of approximately 200 m/s at the surface to about 900 m/s at 160 m depth and confirm a substantial thickening of low-velocity material westward into the valley. From the P-wave reflection profile, we interpret shallow (100–600 m) bedrock deformation extending from the surface trace of the Wasatch fault to roughly 1.5 km west into the valley. The bedrock deformation is caused by multiple interpreted fault splays displacing fault blocks downward to the west of the range front. Further west in the valley, the P-wave data reveal subhorizontal horizons from approximately 90 to 900 m depth that vary in thickness and whose dip increases with depth eastward toward the Wasatch fault. Another inferred fault about 4 km west of the mapped Wasatch fault displaces horizons within the valley to as shallow as 100 m depth. The overall deformational pattern imaged in our data is consistent with the Wasatch fault migrating eastward through time and with the abandonment of earlier synextensional faults, as part of the evolution of an inferred 20-km-wide half-graben structure within Utah Valley. Finite-difference 2D modeling suggests the imaged subsurface basin geometry can cause fourfold variation in peak ground velocity over distances of 300 m.

  10. Back-illuminated imager and method for making electrical and optical connections to same

    NASA Technical Reports Server (NTRS)

    Pain, Bedabrata (Inventor)

    2010-01-01

    Methods for bringing or exposing metal pads or traces to the backside of a backside-illuminated imager allow the pads or traces to reside on the illumination side for electrical connection. These methods provide a solution to a key packaging problem for backside thinned imagers. The methods also provide alignment marks for integrating color filters and microlenses to the imager pixels residing on the frontside of the wafer, enabling high performance multispectral and high sensitivity imagers, including those with extremely small pixel pitch. In addition, the methods incorporate a passivation layer for protection of devices against external contamination, and allow interface trap density reduction via thermal annealing. Backside-illuminated imagers with illumination side electrical connections are also disclosed.

  11. Evaluation of simulation alternatives for the brute-force ray-tracing approach used in backlight design

    NASA Astrophysics Data System (ADS)

    Desnijder, Karel; Hanselaer, Peter; Meuret, Youri

    2016-04-01

    A key requirement to obtain a uniform luminance for a side-lit LED backlight is the optimised spatial pattern of structures on the light guide that extract the light. The generation of such a scatter pattern is usually performed by applying an iterative approach. In each iteration, the luminance distribution of the backlight with a particular scatter pattern is analysed. This is typically performed with a brute-force ray-tracing algorithm, although this approach results in a time-consuming optimisation process. In this study, the Adding-Doubling method is explored as an alternative way for evaluating the luminance of a backlight. Due to the similarities between light propagating in a backlight with extraction structures and light scattering in a cloud of light scatterers, the Adding-Doubling method which is used to model the latter could also be used to model the light distribution in a backlight. The backlight problem is translated to a form upon which the Adding-Doubling method is directly applicable. The calculated luminance for a simple uniform extraction pattern with the Adding-Doubling method matches the luminance generated by a commercial raytracer very well. Although successful, no clear computational advantage over ray tracers is realised. However, the dynamics of light propagation in a light guide as used the Adding-Doubling method, also allow to enhance the efficiency of brute-force ray-tracing algorithms. The performance of this enhanced ray-tracing approach for the simulation of backlights is also evaluated against a typical brute-force ray-tracing approach.

  12. Sub-basalt Imaging of Hydrocarbon-Bearing Mesozoic Sediments Using Ray-Trace Inversion of First-Arrival Seismic Data and Elastic Finite-Difference Full-Wave Modeling Along Sinor-Valod Profile of Deccan Syneclise, India

    NASA Astrophysics Data System (ADS)

    Talukdar, Karabi; Behera, Laxmidhar

    2018-03-01

    Imaging below the basalt for hydrocarbon exploration is a global problem because of poor penetration and significant loss of seismic energy due to scattering, attenuation, absorption and mode-conversion when the seismic waves encounter a highly heterogeneous and rugose basalt layer. The conventional (short offset) seismic data acquisition, processing and modeling techniques adopted by the oil industry generally fails to image hydrocarbon-bearing sub-trappean Mesozoic sediments hidden below the basalt and is considered as a serious problem for hydrocarbon exploration in the world. To overcome this difficulty of sub-basalt imaging, we have generated dense synthetic seismic data with the help of elastic finite-difference full-wave modeling using staggered-grid scheme for the model derived from ray-trace inversion using sparse wide-angle seismic data acquired along Sinor-Valod profile in the Deccan Volcanic Province of India. The full-wave synthetic seismic data generated have been processed and imaged using conventional seismic data processing technique with Kirchhoff pre-stack time and depth migrations. The seismic image obtained correlates with all the structural features of the model obtained through ray-trace inversion of wide-angle seismic data, validating the effectiveness of robust elastic finite-difference full-wave modeling approach for imaging below thick basalts. Using the full-wave modeling also allows us to decipher small-scale heterogeneities imposed in the model as a measure of the rugose basalt interfaces, which could not be dealt with ray-trace inversion. Furthermore, we were able to accurately image thin low-velocity hydrocarbon-bearing Mesozoic sediments sandwiched between and hidden below two thick sequences of high-velocity basalt layers lying above the basement.

  13. Radiation pattern of a borehole radar antenna

    USGS Publications Warehouse

    Ellefsen, K.J.; Wright, D.L.

    2002-01-01

    To understand better how a borehole antenna radiates radar waves into a formation, this phenomenon is simulated numerically using the finite-difference, time-domain method. The simulations are of two different antenna models that include features like a driving point fed by a coaxial cable, resistive loading of the antenna, and a water-filled borehole. For each model, traces are calculated in the far-field region, and then, from these traces, radiation patterns are calculated. The radiation patterns show that the amplitude of the radar wave is strongly affected by its frequency, its propagation direction, and the resistive loading of the antenna.

  14. Magma Chamber of the 26.5 ka Oruanui Eruption, Taupo Volcano, New Zealand

    NASA Astrophysics Data System (ADS)

    Liu, Y.; Anderson, A. T.; Wilson, C. J.; Davis, A. M.

    2004-12-01

    We have investigated melt inclusions and their host quartz crystals from the Bishop-Tuff-sized 26.5 ka Oruanui eruption at Taupo volcano, New Zealand. Compositions (major and trace elements, H2O and CO2) of melt inclusions and cathodoluminescence (CL) images of quartz were obtained for eight individual pumices from early, middle and late depositional units. All melt inclusions are high-silica weakly peraluminous rhyolites. Melt inclusions for different eruptive phases have similar ranges of H2O contents (3.8-5.2 wt %), but late-erupted samples have higher CO2 contents (mostly > 140 ppm). A positive correlation between CO2 and compatible trace elements such as Sr suggests that crystallization and melt entrapment occurred under gas-saturated conditions. Trace elements variations in melt inclusions are consistent with fractionation of 30-40 wt % crystals (plagioclase+quartz+pyroxene+amphibole). Crystal contents in pumices, trace-element contents in melt inclusions, and CL zoning patterns of quartz show no correlation with eruptive phases, suggesting that the Oruanui magma was well mixed before eruption. Some Oruanui quartz crystals contain distinctive CL zonings with a jagged ('restitic') core mantled by a black CL zone. Trace element variations in melt inclusions in the 'restitic' cores are consistent with fractionation of Ba-bearing minerals such as sanidine and/or biotite, both of which are rare or absent in rocks erupted from Taupo volcanic center. The above evidence suggests that Oruanui rhyolite is generated by assimilation of previous intruded rocks or country rocks, differentiated by crystal fractionation, and then mixed prior to eruption. Despite the differences in trace element and volatile contents, and crystal assemblages, both Bishop Tuff and Oruanui magmas involve crystal fractionation as one of the main differentiation mechanisms during their evolution. However, there are pronounced differences in the pre-eruptive stratification of the two chambers, which may reflect the tectonic settings, eruption rates, and ages of the systems.

  15. Titanite petrochronology in the Fish Canyon Tuff

    NASA Astrophysics Data System (ADS)

    Schmitz, M. D.; Crowley, J. L.

    2014-12-01

    The petrologic complexity of the archtypical 'monotonous intermediate' Fish Canyon Tuff (FCT) has been previously established by a variety of mineralogical and geochemical proxies [1-2], and the unusual storage and eruptive dynamics of the FCT have been delineated by several geochronological studies [3-5]. Titanite is an apparent equilibrium phase in the penultimate FCT magma, and can be linked petrographically to hornblende crystals that preserve up-temperature core-to-rim zoning profiles. As a reactive, trace element-rich phase, we hypothesized that titanite may record an intracrystalline record of magma chamber dynamics. Titanite crystals from the same separate analyzed in [4] were oriented and doubly-polished to yield characteristic wedge-shaped cross-sectional wafers approximately 300 µm in thickness. BSE imaging guided LA-ICPMS analyses of a full suite of trace elements using a 25 µm beam diameter and crater depth on multiple locations across both sides of the wafer. Most titanite crystals are characterized by large variations in trace elements, including at least two generations of REE-enriched, actinide-poor, low Sr, large Eu anomaly cores overgrown by REE-depleted, actinide-rich, high Sr domains with small Eu anomalies and distinctive concave-up middle to heavy REE patterns. Trace element contents and patterns correlate strongly with Eu anomaly; intermediate compositions are abundant and spatially correlated to reaction zones between core and rim domains. Within the context of the batholithic rejuvenation model for the FCT magma [1-2], these trace element variations are interpreted to record the partial melting of a differentiated crystalline FCT precursor and its hybridization with a more 'mafic' flux. ID-TIMS dating of end-member titanites confirm older ages (ca 28.4 to 29.0 Ma) for cores and define a younger age for rejuvenation of ca 28.2 Ma, consistent with recent U-Pb zircon and 40Ar/39Ar studies [5-7]. [1] Bachmann & Dungan (2002) Am Mineral 87, 1062-1076. [2] Bachmann et al (2002) J Petrology 43, 1469-1503. [3] Bachmann et al (2007) Chem Geol 236, 134-166. [4] Schmitz & Bowring (2001) GCA 65, 2571-2587. [5] Wotzlaw et al (2013) Geology 41, 867-870. [6] Rivera et al. (2011) EPSL 311, 420-426. [7] Kuiper et al (2008) Science 320, 500-504.

  16. Spatiotemporal analysis of Quaternary normal faults in the Northern Rocky Mountains, USA

    NASA Astrophysics Data System (ADS)

    Davarpanah, A.; Babaie, H. A.; Reed, P.

    2010-12-01

    The mid-Tertiary Basin-and-Range extensional tectonic event developed most of the normal faults that bound the ranges in the northern Rocky Mountains within Montana, Wyoming, and Idaho. The interaction of the thermally induced stress field of the Yellowstone hot spot with the existing Basin-and-Range fault blocks, during the last 15 my, has produced a new, spatially and temporally variable system of normal faults in these areas. The orientation and spatial distribution of the trace of these hot-spot induced normal faults, relative to earlier Basin-and-Range faults, have significant implications for the effect of the temporally varying and spatially propagating thermal dome on the growth of new hot spot related normal faults and reactivation of existing Basin-and-Range faults. Digitally enhanced LANDSAT 7 Enhanced Thematic Mapper Plus (ETM+) and Landsat 4 and 5 Thematic Mapper (TM) bands, with spatial resolution of 30 m, combined with analytical GIS and geological techniques helped in determining and analyzing the lineaments and traces of the Quaternary, thermally-induced normal faults in the study area. Applying the color composite (CC) image enhancement technique, the combination of bands 3, 2 and 1 of the ETM+ and TM images was chosen as the best statistical choice to create a color composite for lineament identification. The spatiotemporal analysis of the Quaternary normal faults produces significant information on the structural style, timing, spatial variation, spatial density, and frequency of the faults. The seismic Quaternary normal faults, in the whole study area, are divided, based on their age, into four specific sets, which from oldest to youngest include: Quaternary (>1.6 Ma), middle and late Quaternary (>750 ka), latest Quaternary (>15 ka), and the last 150 years. A density map for the Quaternary faults reveals that most active faults are near the current Yellowstone National Park area (YNP), where most seismically active faults, in the past 1.6 my, are located. The GIS based autocorrelation method, applied to the trace orientation, length, frequency, and spatial distribution for each age-defined fault set, revealed spatial homogeneity for each specific set. The results of the method of Moran`sI and Geary`s C show no spatial autocorrelation among the trend of the fault traces and their location. Our results suggest that while lineaments of similar age define a clustered pattern in each domain, the overall distribution pattern of lineaments with different ages seems to be non-uniform (random). The directional distribution analysis reveals a distinct range of variation for fault traces of different ages (i.e., some displaying ellipsis behavior). Among the Quaternary normal fault sets, the youngest lineament set (i.e., last 150 years) defines the greatest ellipticity (eccentricity) and the least lineaments distribution variation. The frequency rose diagram for the entire Quaternary normal faults, shows four major modes (around 360o, 330o, 300o, and 270o), and two minor modes (around 235 and 205).

  17. (im)Balance of Forces in the Corona

    NASA Astrophysics Data System (ADS)

    Sylwester, J.; Sylwester, B.

    Observed pattern of variability of solar atmosphere plasma structures, often accompanied by respective measured Doppler shifts, provides a direct evidence of imbalanced forces acting in this environment. Observed motions have been studied in various energy bands, extending from radio to hard X-rays using ground and space-borne instruments. Here, we present the results of a dedicated study of present observational databases in selected energy ranges with a special interest focused on TRACE movies. In our search we included also recently released wavelet-processed EIT and LASCO movies (from SOHO) as they provide additional support to the conclusions of this study. The main outcome of the work performed is our better understanding of a basic role played by plasma kernels in every ``layer'' of the solar atmosphere. These kernels appear to be present, and rapidly evolve at the locations of violent (intense) energy release locations. Subsequent formation of a more stable coronal magnetic structures seen in the form of ``spiders'' or ``scorpions'' is due to self-reorganization of plasma kernels. It comes out that the spider structure represents a basic, quasi-equilibrium building block of the solar atmosphere. When observed in a particular image, within a limited energy band, i.e. optical, EUV, soft or hard X-rays, only a part of this spider plasma structure can usually be seen, noticeably resembling a loop-like structure with a brighter top, or an arcade of loops connected along the ridge of summit kernels, or seemingly isolated oval source. This energy-dependent visibility effects caused a general confusion present in solar physics and led to proliferation of simple fluxtube scenarios. In our study presented herewith, we used the images obtained with the best available resolution, being enhanced numerically where possible. For the first time we enhanced the TRACE image data cube in a systematic way for a particular flare. Based on the results of analysis of a large number of images, we push forward a qualitative toy model of atmospheric connectivity pattern (Sylwester, J. and Sylwester, B., 2004). This hierarchic model is able to handle in a natural way observed complexity of atmospheric phenomena. Here, we discuss to some extent verifiable predictions of the hierarchical model outlining a number of new studies which might prove the concept. These predictions arise concurrently with the first data coming down from new missions being recently launched into orbit: the Hinode and the Stereo.

  18. A single-trace dual-process model of episodic memory: a novel computational account of familiarity and recollection.

    PubMed

    Greve, Andrea; Donaldson, David I; van Rossum, Mark C W

    2010-02-01

    Dual-process theories of episodic memory state that retrieval is contingent on two independent processes: familiarity (providing a sense of oldness) and recollection (recovering events and their context). A variety of studies have reported distinct neural signatures for familiarity and recollection, supporting dual-process theory. One outstanding question is whether these signatures reflect the activation of distinct memory traces or the operation of different retrieval mechanisms on a single memory trace. We present a computational model that uses a single neuronal network to store memory traces, but two distinct and independent retrieval processes access the memory. The model is capable of performing familiarity and recollection-based discrimination between old and new patterns, demonstrating that dual-process models need not to rely on multiple independent memory traces, but can use a single trace. Importantly, our putative familiarity and recollection processes exhibit distinct characteristics analogous to those found in empirical data; they diverge in capacity and sensitivity to sparse and correlated patterns, exhibit distinct ROC curves, and account for performance on both item and associative recognition tests. The demonstration that a single-trace, dual-process model can account for a range of empirical findings highlights the importance of distinguishing between neuronal processes and the neuronal representations on which they operate.

  19. Temporal patterns of inputs to cerebellum necessary and sufficient for trace eyelid conditioning.

    PubMed

    Kalmbach, Brian E; Ohyama, Tatsuya; Mauk, Michael D

    2010-08-01

    Trace eyelid conditioning is a form of associative learning that requires several forebrain structures and cerebellum. Previous work suggests that at least two conditioned stimulus (CS)-driven signals are available to the cerebellum via mossy fiber inputs during trace conditioning: one driven by and terminating with the tone and a second driven by medial prefrontal cortex (mPFC) that persists through the stimulus-free trace interval to overlap in time with the unconditioned stimulus (US). We used electric stimulation of mossy fibers to determine whether this pattern of dual inputs is necessary and sufficient for cerebellar learning to express normal trace eyelid responses. We find that presenting the cerebellum with one input that mimics persistent activity observed in mPFC and the lateral pontine nuclei during trace eyelid conditioning and another that mimics tone-elicited mossy fiber activity is sufficient to produce responses whose properties quantitatively match trace eyelid responses using a tone. Probe trials with each input delivered separately provide evidence that the cerebellum learns to respond to the mPFC-like input (that overlaps with the US) and learns to suppress responding to the tone-like input (that does not). This contributes to precisely timed responses and the well-documented influence of tone offset on the timing of trace responses. Computer simulations suggest that the underlying cerebellar mechanisms involve activation of different subsets of granule cells during the tone and during the stimulus-free trace interval. These results indicate that tone-driven and mPFC-like inputs are necessary and sufficient for the cerebellum to learn well-timed trace conditioned responses.

  20. TRACE Images of the Solar Chromosphere, Transition Region, and Low Corona at High Cadence and High Spatial Resolution

    NASA Astrophysics Data System (ADS)

    Tarbell, T. D.; Handy, B. N.; Judge, P. G.

    1999-05-01

    We present TRACE images and movies showing C IV emission (transition region at 80,000 degrees) and UV continuum (temperature minimum region) of quiet and active regions. TRACE images using the 1550, 1600, and 1700 Angstroms filters can be combined to estimate the total emission in the C IV 1548 and 1550 lines and the UV continuum. These are supplemented in different observations with MDI magnetograms, TRACE 171 Angstroms images (Fe IX/X and perhaps O VI), and SUMER spectra of chromospheric and transition region lines from SOHO JOP 72. In quiet sun, bright C IV transients are seen in the vicinity of flux emergence, flux cancellation, and less dramatic interactions of small magnetic structures. Some of these are accompanied by high-velocity explosive events seen in SUMER spectra. The C IV emission can be well-separated from the photospheric magnetic footpoints, suggesting that it takes place on current sheets higher in the atmosphere separating different flux systems. In active regions, both bright and dark fibrils or loops are seen in C IV. Many nano/micro/sub flares are seen, some but not all of which are associated with emerging flux. The C IV emission of "moss" regions, footpoints of hot coronal loops, is contrasted with that of similar plage which does not have hot loops above it. This work was supported by the NASA contracts and grants for TRACE, MDI, and SOHO.

  1. The Redox Dynamics of Iron in a Seasonally Waterlogged Forest Soil (Chaux Forest, Eastern France) Traced with Rare Earth Element Distribution Patterns

    NASA Astrophysics Data System (ADS)

    Steinmann, M.; Floch, A. L.; Lucot, E.; Badot, P. M.

    2014-12-01

    The oxyhydroxides of iron are common soil minerals and known to control the availability of various major and trace elements essential for biogeochemical processes. We present a study from acidic natural forest soils, where reducing redox conditions due to seasonal waterlogging lead to the dissolution of Fe-oxyhydroxides, and to the release of Fe to soil water. In order to study in detail the mechanism of redox cycling of Fe, we used Rare Earth Element (REE) distribution patterns, because an earlier study has shown that they are a suitable tool to identify trace metal sources during soil reduction in wetland soils (Davranche et al., 2011). The REE patterns of soil leachates obtained with the modified 3-step BCR extraction scheme of Rauret et al., (1999) were compared with those of natural soil water. The adsorbed fractions (F1 leach), the reducible fraction of the deepest soil horizon H4 (F2 leach, 50-120 cm), and the oxidizable fractions of horizons H2 to H4 (F3 leachs, 24-120 cm) yielded REE patterns almost identical to soil water (see figure), showing that the REE and trace metal content of soil water was mainly derived from the F1 pool, and from the F2 and F3 pools of the clay mineral-rich deep soil horizons. In contrast, the F2 leach mobilized mainly Fe-oxyhydroxides associated with organic matter of the surface soil and yielded REE patterns significantly different from those of soil water. These results suggest that the trace metal content of soil water in hydromorphic soils is primarily controlled by the clay fraction of the deeper soil horizons and not by organic matter and related Fe-oxyhydroxides of the surface soil. Additional analyses are in progress in order to verify whether the REE and trace metals of the deeper soil horizons were directly derived from clay minerals or from associated Fe-oxyhydroxide coatings. Refs cited: Davranche et al. (2011), Chem. Geol. 284; Rauret et al. (1999), J. Environ. Monit. 1.

  2. The use of near-infrared photography for biodegradable pollution monitoring of tidal rivers

    NASA Technical Reports Server (NTRS)

    Bressette, W. E.; Lear, D. E., Jr.

    1973-01-01

    On October 2, 1972, a pattern of chlorophyll a containing phytoplankton (algae) was detected from 3-km altitude in a series of near-infrared photographs of the Potomac River 'Salt Wedge Area.' Densitometer traces over the film images, related to in situ measurements of chlorophyll a concentrations that varied from 4 to more than 3000 micrograms/liter, revealed a phytoplankton 'bloom' threshold in the near infrared between the concentration of 34 and 51 micrograms/liter. The photography also revealed bottom features through two meters of water and made it possible to integrate chlorophyll a concentrations over a 16 sq km area to demonstrate this remote sensing technique for biodegradable pollution monitoring.

  3. Spatial Mapping of Structural and Connectional Imaging Data for the Developing Human Brain with Diffusion Tensor Imaging

    PubMed Central

    Ouyang, Austin; Jeon, Tina; Sunkin, Susan M.; Pletikos, Mihovil; Sedmak, Goran; Sestan, Nenad; Lein, Ed S.; Huang, Hao

    2014-01-01

    During human brain development from fetal stage to adulthood, the white matter (WM) tracts undergo dramatic changes. Diffusion tensor imaging (DTI), a widely used magnetic resonance imaging (MRI) modality, offers insight into the dynamic changes of WM fibers as these fibers can be noninvasively traced and three-dimensionally (3D) reconstructed with DTI tractography. The DTI and conventional T1 weighted MRI images also provide sufficient cortical anatomical details for mapping the cortical regions of interests (ROIs). In this paper, we described basic concepts and methods of DTI techniques that can be used to trace major WM tracts noninvasively from fetal brain of 14 postconceptional weeks (pcw) to adult brain. We applied these techniques to acquire DTI data and trace, reconstruct and visualize major WM tracts during development. After categorizing major WM fiber bundles into five unique functional tract groups, namely limbic, brain stem, projection, commissural and association tracts, we revealed formation and maturation of these 3D reconstructed WM tracts of the developing human brain. The structural and connectional imaging data offered by DTI provides the anatomical backbone of transcriptional atlas of the developing human brain. PMID:25448302

  4. Automated method for tracing leading and trailing processes of migrating neurons in confocal image sequences

    NASA Astrophysics Data System (ADS)

    Kerekes, Ryan A.; Gleason, Shaun S.; Trivedi, Niraj; Solecki, David J.

    2010-03-01

    Segmentation, tracking, and tracing of neurons in video imagery are important steps in many neuronal migration studies and can be inaccurate and time-consuming when performed manually. In this paper, we present an automated method for tracing the leading and trailing processes of migrating neurons in time-lapse image stacks acquired with a confocal fluorescence microscope. In our approach, we first locate and track the soma of the cell of interest by smoothing each frame and tracking the local maxima through the sequence. We then trace the leading process in each frame by starting at the center of the soma and stepping repeatedly in the most likely direction of the leading process. This direction is found at each step by examining second derivatives of fluorescent intensity along curves of constant radius around the current point. Tracing terminates after a fixed number of steps or when fluorescent intensity drops below a fixed threshold. We evolve the resulting trace to form an improved trace that more closely follows the approximate centerline of the leading process. We apply a similar algorithm to the trailing process of the cell by starting the trace in the opposite direction. We demonstrate our algorithm on two time-lapse confocal video sequences of migrating cerebellar granule neurons (CGNs). We show that the automated traces closely approximate ground truth traces to within 1 or 2 pixels on average. Additionally, we compute line intensity profiles of fluorescence along the automated traces and quantitatively demonstrate their similarity to manually generated profiles in terms of fluorescence peak locations.

  5. Pyrite deformation and connections to gold mobility: insight from micro-structural analysis and trace element mapping

    NASA Astrophysics Data System (ADS)

    Dubosq, Renelle; Rogowitz, Anna; Lawley, Christopher; Schneider, David; Jackson, Simon

    2017-04-01

    Pyrite is an important and ubiquitous gold-bearing phase in many orogenic gold deposits making the study of its deformation behaviour under metamorphic conditions crucial to the understanding of gold (re)mobilization. However, pyrite deformation mechanisms and their influence on the retention or release of trace elements during deformation and metamorphism remain poorly understood. We propose a syn- to post-peak metamorphic and deformation driven gold upgrading model where gold is remobilized through deformation-induced diffusion pathways in the form of substructures in pyrite. The middle amphibolite facies assemblage (actinolite-biotite-plagioclase-almandine) of the Detour Lake deposit (Canada) makes it an ideal study area due to maximum temperatures reaching 550°C, exceeding the conditions for plastic deformation in pyrite (450°C). The world-class Detour Lake deposit, containing 16.4 Moz of Au at 1 g/t, is a Neoarchean orogenic gold ore body located in the northern Abitibi district within the Superior Province. The mine is situated along the high strain, sub-vertical ductile-brittle Sunday Lake Deformation Zone (SLDZ) parallel to the broadly E-W trending Abitibi greenstone belt. Herein we combine orientation contrast (OC) forescatter imaging, electron backscatter diffraction (EBSD) and 2D laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) trace element pyrite mapping to evaluate the influence of pyrite brittle and plastic deformation on the release of trace elements during syn-metamorphic gold remobilization. Local misorientation patterns in pyrite exhibit parallel bands that can be described by continuous rotation around one of the <100> axes, whereas higher strain areas reveal more heterogeneous misorientation patterns and the development of low-angle grain boundaries with late fractures indicative of dislocation creep and strain hardening. These late fractures are an important micro-structural setting for gold and clusters of precious-metal mineral inclusions (telluride minerals). Minor recrystallization processes can also be observed along phase boundaries between pyrite and more competent amphibole crystals. LA-ICP-MS trace element maps document primary, syn-metamorphic oscillatory zoning of some chalcophile and siderophile elements during crystallization of pyrite porphyroblasts. These primary pyrite features are cut by late metal-rich fractures suggesting that remobilization of gold occurred with trace element enrichment of other chalcophile and siderophile elements (Cu, Pb, Zn, Ag, Bi, Te), which post-dates the main period of syn-metamorphic pyrite crystallization at the margins of pre- to syn-deformation, high-grade gold veins. Pyrite grain boundaries and subgrains are also base and precious metal rich, suggesting that late gold remobilization also occurred during pyrite recrystallization. Additional trace element mapping will help determine to what extent pyrite plastic deformation facilitates the diffusion of gold and other trace elements during gold precipitation and remobilization, which, in turn, will inform the source to sink pathways of ore deposition.

  6. [Clinical effect of three dimensional human body scanning system BurnCalc in the evaluation of burn wound area].

    PubMed

    Lu, J; Wang, L; Zhang, Y C; Tang, H T; Xia, Z F

    2017-10-20

    Objective: To validate the clinical effect of three dimensional human body scanning system BurnCalc developed by our research team in the evaluation of burn wound area. Methods: A total of 48 burn patients treated in the outpatient department of our unit from January to June 2015, conforming to the study criteria, were enrolled in. For the first 12 patients, one wound on the limbs or torso was selected from each patient. The stability of the system was tested by 3 attending physicians using three dimensional human body scanning system BurnCalc to measure the area of wounds individually. For the following 36 patients, one wound was selected from each patient, including 12 wounds on limbs, front torso, and side torso, respectively. The area of wounds was measured by the same attending physician using transparency tracing method, National Institutes of Health (NIH) Image J method, and three dimensional human body scanning system BurnCalc, respectively. The time for getting information of 36 wounds by three methods was recorded by stopwatch. The stability among the testers was evaluated by the intra-class correlation coefficient (ICC). Data were processed with randomized blocks analysis of variance and Bonferroni test. Results: (1) Wound area of patients measured by three physicians using three dimensional human body scanning system BurnCalc was (122±95), (121±95), and (123±96) cm(2,) respectively, and there was no statistically significant difference among them ( F =1.55, P >0.05). The ICC among 3 physicians was 0.999. (2) The wound area of limbs of patients measured by transparency tracing method, NIH Image J method, and three dimensional human body scanning system BurnCalc was (84±50), (76±46), and (84±49) cm(2,) respectively. There was no statistically significant difference in the wound area of limbs of patients measured by transparency tracing method and three dimensional human body scanning system BurnCalc ( P >0.05). The wound area of limbs of patients measured by NIH Image J method was smaller than that measured by transparency tracing method and three dimensional human body scanning system BurnCalc (with P values below 0.05). There was no statistically significant difference in the wound area of front torso of patients measured by transparency tracing method, NIH Image J method, and three dimensional human body scanning system BurnCalc ( F =0.33, P >0.05). The wound area of side torso of patients measured by transparency tracing method, NIH Image J method, and three dimensional human body scanning system BurnCalc was (169±88), (150±80), and (169±86) cm(2,) respectively. There was no statistically significant difference in the wound area of side torso of patients measured by transparency tracing method and three dimensional human body scanning system BurnCalc ( P >0.05). The wound area of side torso of patients measured by NIH Image J method was smaller than that measured by transparency tracing method and three dimensional human body scanning system BurnCalc (with P values below 0.05). (3) The time for getting information of wounds of patients by transparency tracing method, NIH Image J method, and three dimensional human body scanning system BurnCalc was (77±14), (10±3), and (9±3) s, respectively. The time for getting information of wounds of patients by transparency tracing method was longer than that by NIH Image J method and three dimensional human body scanning system BurnCalc (with P values below 0.05). The time for getting information of wounds of patients by three dimensional human body scanning system BurnCalc was close to that by NIH Image J method ( P >0.05). Conclusions: The three dimensional human body scanning system BurnCalc is stable and can accurately evaluate the wound area on limbs and torso of burn patients.

  7. Stray Light Analysis

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Based on a Small Business Innovation Research contract from the Jet Propulsion Laboratory, TracePro is state-of-the-art interactive software created by Lambda Research Corporation to detect stray light in optical systems. An image can be ruined by incidental light in an optical system. To maintain image excellence from an optical system, stray light must be detected and eliminated. TracePro accounts for absorption, specular reflection and refraction, scattering and aperture diffraction of light. Output from the software consists of spatial irradiance plots and angular radiance plots. Results can be viewed as contour maps or as ray histories in tabular form. TracePro is adept at modeling solids such as lenses, baffles, light pipes, integrating spheres, non-imaging concentrators, and complete illumination systems. The firm's customer base includes Lockheed Martin, Samsung Electronics and other manufacturing, optical, aerospace, and educational companies worldwide.

  8. Elimination of 'ghost'-effect-related systematic error in metrology of X-ray optics with a long trace profiler

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yashchuk, Valeriy V.; Irick, Steve C.; MacDowell, Alastair A.

    2005-04-28

    A data acquisition technique and relevant program for suppression of one of the systematic effects, namely the ''ghost'' effect, of a second generation long trace profiler (LTP) is described. The ''ghost'' effect arises when there is an unavoidable cross-contamination of the LTP sample and reference signals into one another, leading to a systematic perturbation in the recorded interference patterns and, therefore, a systematic variation of the measured slope trace. Perturbations of about 1-2 {micro}rad have been observed with a cylindrically shaped X-ray mirror. Even stronger ''ghost'' effects show up in an LTP measurement with a mirror having a toroidal surfacemore » figure. The developed technique employs separate measurement of the ''ghost''-effect-related interference patterns in the sample and the reference arms and then subtraction of the ''ghost'' patterns from the sample and the reference interference patterns. The procedure preserves the advantage of simultaneously measuring the sample and reference signals. The effectiveness of the technique is illustrated with LTP metrology of a variety of X-ray mirrors.« less

  9. Temperature and Gravity Dependence of Trace Element Abundances in Hot DA White Dwarfs (94-EUVE-094)

    NASA Technical Reports Server (NTRS)

    Finley, David S.

    1998-01-01

    EUV spectroscopy has shown that DA white dwarfs hotter than about 45,000 K may contain trace heavy elements, while those hotter than about 50,000 K almost always have significant abundances of trace heavy elements. One of our continuing challenges is to identify and determine the abundances of these trace constituents, and then to relate the observed abundance patterns to the present conditions and previous evolutionary histories of the hot DA white dwarfs.

  10. Surface deformation associated with the 2013 Mw7.7 Balochistan earthquake: Geologic slip rates may significantly underestimate strain release

    NASA Astrophysics Data System (ADS)

    Gold, Ryan; Reitman, Nadine; Briggs, Richard; Barnhart, William; Hayes, Gavin

    2015-04-01

    The 24 September 2013 Mw7.7 Balochistan, Pakistan earthquake ruptured a ~200 km-long stretch of the 60° ± 15° northwest-dipping Hoshab fault in southern Pakistan. The earthquake is notable because it produced the second-largest lateral surface displacement observed for a continental strike-slip earthquake. Surface displacements and geodetic and teleseismic inversions indicate that peak slip occurred within the upper 0-3 km of the crust. To explore along-strike and fault-perpendicular surface deformation patterns, we remotely mapped the surface trace of the rupture and measured its surface deformation using high-resolution (0.5 m) pre- and post-event satellite imagery. Post-event images were collected 7-114 days following the earthquake, so our analysis captures the sum of both the coseismic and post-seismic (e.g., after slip) deformation. We document peak left-lateral offset of ~15 m using 289 near-field (±10 m from fault) laterally offset piercing points, such as streams, terrace risers, and roads. We characterize off-fault deformation by measuring the medium- (±200 m from fault) and far-field (±10 km from fault) displacement using manual (242 measurements) and automated image cross-correlation methods. Off-fault peak lateral displacement values (medium- and far-field) are ~16 m and commonly exceed the on-fault displacement magnitudes. Our observations suggest that coseismic surface displacement typically increases with distance away from the surface trace of the fault; however, the majority of surface displacement is within 100 m of the primary fault trace and is most localized on sections of the rupture exhibiting narrow (<5 m) zones of observable surface deformation. Furthermore, the near-field displacement measurements account for, on average, only 73% of the total coseismic displacement field and the pattern is highly heterogeneous. This analysis highlights the importance of identifying paleoseismic field study sites (e.g. trenches) that span fault sections with narrow deformation zones in order to capture the full deformation field. Our results imply that hazard analyses based on geologically-determined fault slip rates (e.g., near-field) should consider the significant and heterogeneous mismatch we document between on- and off-fault coseismic deformation.

  11. Transmission mode adaptive beamforming for planar phased arrays and its application to 3D ultrasonic transcranial imaging

    NASA Astrophysics Data System (ADS)

    Shapoori, Kiyanoosh; Sadler, Jeffrey; Wydra, Adrian; Malyarenko, Eugene; Sinclair, Anthony; Maev, Roman G.

    2013-03-01

    A new adaptive beamforming method for accurately focusing ultrasound behind highly scattering layers of human skull and its application to 3D transcranial imaging via small-aperture planar phased arrays are reported. Due to its undulating, inhomogeneous, porous, and highly attenuative structure, human skull bone severely distorts ultrasonic beams produced by conventional focusing methods in both imaging and therapeutic applications. Strong acoustical mismatch between the skull and brain tissues, in addition to the skull's undulating topology across the active area of a planar ultrasonic probe, could cause multiple reflections and unpredictable refraction during beamforming and imaging processes. Such effects could significantly deflect the probe's beam from the intended focal point. Presented here is a theoretical basis and simulation results of an adaptive beamforming method that compensates for the latter effects in transmission mode, accompanied by experimental verification. The probe is a custom-designed 2 MHz, 256-element matrix array with 0.45 mm element size and 0.1mm kerf. Through its small footprint, it is possible to accurately measure the profile of the skull segment in contact with the probe and feed the results into our ray tracing program. The latter calculates the new time delay patterns adapted to the geometrical and acoustical properties of the skull phantom segment in contact with the probe. The time delay patterns correct for the refraction at the skull-brain boundary and bring the distorted beam back to its intended focus. The algorithms were implemented on the ultrasound open-platform ULA-OP (developed at the University of Florence).

  12. Design and testing of an annular array for very-high-frequency imaging

    NASA Astrophysics Data System (ADS)

    Ketterling, Jeffrey A.; Ramachandran, Sarayu; Lizzi, Frederic L.; Aristizábal, Orlando; Turnbull, Daniel H.

    2004-05-01

    Very-high-frequency ultrasound (VHFU) transducer technology is currently experiencing a great deal of interest. Traditionally, researchers have used single-element transducers which achieve exceptional lateral image resolution although at a very limited depth of field. A 5-ring focused annular array, a transducer geometry that permits an increased depth of field via electronic focusing, has been constructed. The transducer is fabricated with a PVDF membrane and a copper-clad Kapton film with an annular array pattern. The PVDF is bonded to the Kapton film and pressed into a spherically curved shape. The back side of the transducer is then filled with epoxy. One side of the PVDF is metallized with gold, forming the ground plane of the transducer. The array elements are accessed electrically via copper traces formed on the Kapton film. The annular array consists of 5 equal-area rings with an outer diameter of 1 cm and a radius of curvature of 9 mm. A wire reflector target was used to test the imaging capability of the transducer by acquiring B-scan data for each transmit/receive pair. A synthetic aperture approach was then used to reconstruct the image and demonstrate the enhanced depth of field capabilities of the transducer.

  13. A Virtual Reality Visualization Tool for Neuron Tracing

    PubMed Central

    Usher, Will; Klacansky, Pavol; Federer, Frederick; Bremer, Peer-Timo; Knoll, Aaron; Angelucci, Alessandra; Pascucci, Valerio

    2017-01-01

    Tracing neurons in large-scale microscopy data is crucial to establishing a wiring diagram of the brain, which is needed to understand how neural circuits in the brain process information and generate behavior. Automatic techniques often fail for large and complex datasets, and connectomics researchers may spend weeks or months manually tracing neurons using 2D image stacks. We present a design study of a new virtual reality (VR) system, developed in collaboration with trained neuroanatomists, to trace neurons in microscope scans of the visual cortex of primates. We hypothesize that using consumer-grade VR technology to interact with neurons directly in 3D will help neuroscientists better resolve complex cases and enable them to trace neurons faster and with less physical and mental strain. We discuss both the design process and technical challenges in developing an interactive system to navigate and manipulate terabyte-sized image volumes in VR. Using a number of different datasets, we demonstrate that, compared to widely used commercial software, consumer-grade VR presents a promising alternative for scientists. PMID:28866520

  14. Optical inspection system for cylindrical objects

    DOEpatents

    Brenden, Byron B.; Peters, Timothy J.

    1989-01-01

    In the inspection of cylindrical objects, particularly O-rings, the object is translated through a field of view and a linear light trace is projected on its surface. An image of the light trace is projected on a mask, which has a size and shape corresponding to the size and shape which the image would have if the surface of the object were perfect. If there is a defect, light will pass the mask and be sensed by a detector positioned behind the mask. Preferably, two masks and associated detectors are used, one mask being convex to pass light when the light trace falls on a projection from the surface and the other concave, to pass light when the light trace falls on a depression in the surface. The light trace may be either dynamic, formed by a scanned laser beam, or static, formed by such a beam focussed by a cylindrical lens. Means are provided to automatically keep the illuminating receiving systems properly aligned.

  15. A Virtual Reality Visualization Tool for Neuron Tracing.

    PubMed

    Usher, Will; Klacansky, Pavol; Federer, Frederick; Bremer, Peer-Timo; Knoll, Aaron; Yarch, Jeff; Angelucci, Alessandra; Pascucci, Valerio

    2018-01-01

    Tracing neurons in large-scale microscopy data is crucial to establishing a wiring diagram of the brain, which is needed to understand how neural circuits in the brain process information and generate behavior. Automatic techniques often fail for large and complex datasets, and connectomics researchers may spend weeks or months manually tracing neurons using 2D image stacks. We present a design study of a new virtual reality (VR) system, developed in collaboration with trained neuroanatomists, to trace neurons in microscope scans of the visual cortex of primates. We hypothesize that using consumer-grade VR technology to interact with neurons directly in 3D will help neuroscientists better resolve complex cases and enable them to trace neurons faster and with less physical and mental strain. We discuss both the design process and technical challenges in developing an interactive system to navigate and manipulate terabyte-sized image volumes in VR. Using a number of different datasets, we demonstrate that, compared to widely used commercial software, consumer-grade VR presents a promising alternative for scientists.

  16. Classifying the Perceptual Interpretations of a Bistable Image Using EEG and Artificial Neural Networks

    PubMed Central

    Hramov, Alexander E.; Maksimenko, Vladimir A.; Pchelintseva, Svetlana V.; Runnova, Anastasiya E.; Grubov, Vadim V.; Musatov, Vyacheslav Yu.; Zhuravlev, Maksim O.; Koronovskii, Alexey A.; Pisarchik, Alexander N.

    2017-01-01

    In order to classify different human brain states related to visual perception of ambiguous images, we use an artificial neural network (ANN) to analyze multichannel EEG. The classifier built on the basis of a multilayer perceptron achieves up to 95% accuracy in classifying EEG patterns corresponding to two different interpretations of the Necker cube. The important feature of our classifier is that trained on one subject it can be used for the classification of EEG traces of other subjects. This result suggests the existence of common features in the EEG structure associated with distinct interpretations of bistable objects. We firmly believe that the significance of our results is not limited to visual perception of the Necker cube images; the proposed experimental approach and developed computational technique based on ANN can also be applied to study and classify different brain states using neurophysiological data recordings. This may give new directions for future research in the field of cognitive and pathological brain activity, and for the development of brain-computer interfaces. PMID:29255403

  17. A data distributed parallel algorithm for ray-traced volume rendering

    NASA Technical Reports Server (NTRS)

    Ma, Kwan-Liu; Painter, James S.; Hansen, Charles D.; Krogh, Michael F.

    1993-01-01

    This paper presents a divide-and-conquer ray-traced volume rendering algorithm and a parallel image compositing method, along with their implementation and performance on the Connection Machine CM-5, and networked workstations. This algorithm distributes both the data and the computations to individual processing units to achieve fast, high-quality rendering of high-resolution data. The volume data, once distributed, is left intact. The processing nodes perform local ray tracing of their subvolume concurrently. No communication between processing units is needed during this locally ray-tracing process. A subimage is generated by each processing unit and the final image is obtained by compositing subimages in the proper order, which can be determined a priori. Test results on both the CM-5 and a group of networked workstations demonstrate the practicality of our rendering algorithm and compositing method.

  18. A study of the impact of moist-heat and dry-heat treatment processes on hazardous trace elements migration in food waste.

    PubMed

    Chen, Ting; Jin, Yiying; Qiu, Xiaopeng; Chen, Xin

    2015-03-01

    Using laboratory experiments, the authors investigated the impact of dry-heat and moist-heat treatment processes on hazardous trace elements (As, Hg, Cd, Cr, and Pb) in food waste and explored their distribution patterns for three waste components: oil, aqueous, and solid components. The results indicated that an insignificant reduction of hazardous trace elements in heat-treated waste-0.61-14.29% after moist-heat treatment and 4.53-12.25% after dry-heat treatment-and a significant reduction in hazardous trace elements (except for Hg without external addition) after centrifugal dehydration (P < 0.5). Moreover, after heat treatment, over 90% of the hazardous trace elements in the waste were detected in the aqueous and solid components, whereas only a trace amount of hazardous trace elements was detected in the oil component (<0.01%). In addition, results indicated that heat treatment process did not significantly reduce the concentration of hazardous trace elements in food waste, but the separation process for solid and aqueous components, such as centrifugal dehydration, could reduce the risk considerably. Finally, combined with the separation technology for solid and liquid components, dry-heat treatment is superior to moist-heat treatment on the removal of external water-soluble ionic hazardous trace elements. An insignificant reduction of hazardous trace elements in heat-treated waste showed that heat treatment does not reduce trace elements contamination in food waste considerably, whereas the separation process for solid and aqueous components, such as centrifugal dehydration, could reduce the risk significantly. Moreover, combined with the separation technology for solid and liquid components, dry-heat treatment is superior to moist-heat treatment for the removal of external water-soluble ionic hazardous trace elements, by exploring distribution patterns of trace elements in three waste components: oil, aqueous, and solid components.

  19. Patient training in respiratory-gated radiotherapy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Kini, Vijay R.; Vedam, Subrahmanya S.; Keall, Paul J.

    2003-03-31

    Respiratory gating is used to counter the effects of organ motion during radiotherapy for chest tumors. The effects of variations in patient breathing patterns during a single treatment and from day to day are unknown. We evaluated the feasibility of using patient training tools and their effect on the breathing cycle regularity and reproducibility during respiratory-gated radiotherapy. To monitor respiratory patterns, we used a component of a commercially available respiratory-gated radiotherapy system (Real Time Position Management (RPM) System, Varian Oncology Systems, Palo Alto, CA 94304). This passive marker video tracking system consists of reflective markers placed on the patient's chestmore » or abdomen, which are detected by a wall-mounted video camera. Software installed on a PC interfaced to this camera detects the marker motion digitally and records it. The marker position as a function of time serves as the motion signal that may be used to trigger imaging or treatment. The training tools used were audio prompting and visual feedback, with free breathing as a control. The audio prompting method used instructions to 'breathe in' or 'breathe out' at periodic intervals deduced from patients' own breathing patterns. In the visual feedback method, patients were shown a real-time trace of their abdominal wall motion due to breathing. Using this, they were asked to maintain a constant amplitude of motion. Motion traces of the abdominal wall were recorded for each patient for various maneuvers. Free breathing showed a variable amplitude and frequency. Audio prompting resulted in a reproducible frequency; however, the variability and the magnitude of amplitude increased. Visual feedback gave a better control over the amplitude but showed minor variations in frequency. We concluded that training improves the reproducibility of amplitude and frequency of patient breathing cycles. This may increase the accuracy of respiratory-gated radiation therapy.« less

  20. Applicability of the iterative technique for cardiac resynchronization therapy optimization: full-disclosure, 50-sequential-patient dataset of transmitral Doppler traces, with implications for future research design and guidelines.

    PubMed

    Jones, Siana; Shun-Shin, Matthew J; Cole, Graham D; Sau, Arunashis; March, Katherine; Williams, Suzanne; Kyriacou, Andreas; Hughes, Alun D; Mayet, Jamil; Frenneaux, Michael; Manisty, Charlotte H; Whinnett, Zachary I; Francis, Darrel P

    2014-04-01

    Full-disclosure study describing Doppler patterns during iterative atrioventricular delay (AVD) optimization of biventricular pacemakers (cardiac resynchronization therapy, CRT). Doppler traces of the first 50 eligible patients undergoing iterative Doppler AVD optimization in the BRAVO trial were examined. Three experienced observers classified conformity to guideline-described patterns. Each observer then selected the optimum AVD on two separate occasions: blinded and unblinded to AVD. Four Doppler E-A patterns occurred: A (always merged, 18% of patients), B (incrementally less fusion at short AVDs, 12%), C (full separation at short AVDs, as described by the guidelines, 28%), and D (always separated, 42%). In Groups A and D (60%), the iterative guidelines therefore cannot specify one single AVD. On the kappa scale (0 = chance alone; 1 = perfect agreement), observer agreement for the ideal AVD in Classes B and C was poor (0.32) and appeared worse in Groups A and D (0.22). Blinding caused the scattering of the AVD selected as optimal to widen (standard deviation rising from 37 to 49 ms, P < 0.001). By blinding 28% of the selected optimum AVDs were ≤60 or ≥200 ms. All 50 Doppler datasets are presented, to support future methodological testing. In most patients, the iterative method does not clearly specify one AVD. In all the patients, agreement on the ideal AVD between skilled observers viewing identical images is poor. The iterative protocol may successfully exclude some extremely unsuitable AVDs, but so might simply accepting factory default. Irreproducibility of the gold standard also prevents alternative physiological optimization methods from being validated honestly.

  1. From Ephemeral to Legitimate: An Inquiry into Television's Material Traces in Archival Spaces, 1950s-1970s

    ERIC Educational Resources Information Center

    Bratslavsky, Lauren Michelle

    2013-01-01

    The dissertation offers a historical inquiry about how television's material traces entered archival spaces. Material traces refer to both the moving image products and the assortment of documentation about the processes of television as industrial and creative endeavors. By identifying the development of television-specific archives and…

  2. Segmented Separable Footprint Projector for Digital Breast Tomosynthesis and Its application for Subpixel Reconstruction

    PubMed Central

    Zheng, Jiabei; Fessler, Jeffrey A; Chan, Heang-Ping

    2017-01-01

    Purpose Digital forward and back projectors play a significant role in iterative image reconstruction. The accuracy of the projector affects the quality of the reconstructed images. Digital breast tomosynthesis (DBT) often uses the ray-tracing (RT) projector that ignores finite detector element size. This paper proposes a modified version of the separable footprint (SF) projector, called the segmented separable footprint (SG) projector, that calculates efficiently the Radon transform mean value over each detector element. The SG projector is specifically designed for DBT reconstruction because of the large height-to-width ratio of the voxels generally used in DBT. This study evaluates the effectiveness of the SG projector in reducing projection error and improving DBT reconstruction quality. Methods We quantitatively compared the projection error of the RT and the SG projector at different locations and their performance in regular and subpixel DBT reconstruction. Subpixel reconstructions used finer voxels in the imaged volume than the detector pixel size. Subpixel reconstruction with RT projector uses interpolated projection views as input to provide adequate coverage of the finer voxel grid with the traced rays. Subpixel reconstruction with the SG projector, however, uses the measured projection views without interpolation. We simulated DBT projections of a test phantom using CatSim (GE Global Research, Niskayuna, NY) under idealized imaging conditions without noise and blur, to analyze the effects of the projectors and subpixel reconstruction without other image degrading factors. The phantom contained an array of horizontal and vertical line pair patterns (1 to 9.5 line pairs/mm) and pairs of closely spaced spheres (diameters 0.053 to 0.5 mm) embedded at the mid-plane of a 5-cm-thick breast-tissue-equivalent uniform volume. The images were reconstructed with regular simultaneous algebraic reconstruction technique (SART) and subpixel SART using different projectors. The resolution and contrast of the test objects in the reconstructed images and the computation times were compared under different reconstruction conditions. Results The SG projector reduced the projector error by 1 to 2 orders of magnitude at most locations. In the worst case, the SG projector still reduced the projection error by about 50%. In the DBT reconstructed slices parallel to the detector plane, the SG projector not only increased the contrast of the line pairs and spheres, but also produced more smooth and continuous reconstructed images whereas the discrete and sparse nature of the RT projector caused artifacts appearing as patterned noise. For subpixel reconstruction, the SG projector significantly increased object contrast and computation speed, especially for high subpixel ratios, compared with the RT projector implemented with accelerated Siddon’s algorithm. The difference in the depth resolution among the projectors is negligible under the conditions studied. Our results also demonstrated that subpixel reconstruction can improve the spatial resolution of the reconstructed images, and can exceed the Nyquist limit of the detector under some conditions. Conclusions The SG projector was more accurate and faster than the RT projector. The SG projector also substantially reduced computation time and improved the image quality for the tomosynthesized images with and without subpixel reconstruction. PMID:28058719

  3. Patterns produced when soil is transferred to bras by placing and dragging actions: The application of digital photography and image processing to support visible observations.

    PubMed

    Murray, Kathleen R; Fitzpatrick, Robert W; Bottrill, Ralph; Kobus, Hilton

    2017-07-01

    A series of soil transference experiments (STEs) were undertaken to determine whether patterns identified in laboratory experiments could also be recognised at a simulated crime scene in the field. A clothed 55kg human rescue dummy dressed in a padded bra was either dragged or merely placed on a soil surface at sites with natural and anthropogenic soil types under both wet and dry soil conditions. Transfer patterns produced by dragging compared favourably with those of laboratory experiments. Twelve patterns were identified when a clothed human rescue dummy was dragged across the two soil types in the field. This expanded the original set of eight soil transfer patterns identified from dragging weighted fabric across soil samples in the laboratory. Soil transferred by placing the human rescue dummy resulted in a set of six transfer patterns that were different to those produced by dragging. By comparing trace soil patterns transferred to bras using each transfer method, it was revealed that certain transfer patterns on bras could indicate how the fabric had made contact with a soil surface. A photographic method was developed for crime scene examiners to capture this often subtle soil evidence before a body is transported or the clothing removed. This improved understanding of the dynamics of soil transference to bras and related clothing fabric may assist forensic investigators reconstruct the circumstances of a variety of forensic events. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. Usage of CO2 microbubbles as flow-tracing contrast media in X-ray dynamic imaging of blood flows.

    PubMed

    Lee, Sang Joon; Park, Han Wook; Jung, Sung Yong

    2014-09-01

    X-ray imaging techniques have been employed to visualize various biofluid flow phenomena in a non-destructive manner. X-ray particle image velocimetry (PIV) was developed to measure velocity fields of blood flows to obtain hemodynamic information. A time-resolved X-ray PIV technique that is capable of measuring the velocity fields of blood flows under real physiological conditions was recently developed. However, technical limitations still remained in the measurement of blood flows with high image contrast and sufficient biocapability. In this study, CO2 microbubbles as flow-tracing contrast media for X-ray PIV measurements of biofluid flows was developed. Human serum albumin and CO2 gas were mechanically agitated to fabricate CO2 microbubbles. The optimal fabricating conditions of CO2 microbubbles were found by comparing the size and amount of microbubbles fabricated under various operating conditions. The average size and quantity of CO2 microbubbles were measured by using a synchrotron X-ray imaging technique with a high spatial resolution. The quantity and size of the fabricated microbubbles decrease with increasing speed and operation time of the mechanical agitation. The feasibility of CO2 microbubbles as a flow-tracing contrast media was checked for a 40% hematocrit blood flow. Particle images of the blood flow were consecutively captured by the time-resolved X-ray PIV system to obtain velocity field information of the flow. The experimental results were compared with a theoretically amassed velocity profile. Results show that the CO2 microbubbles can be used as effective flow-tracing contrast media in X-ray PIV experiments.

  5. Principal locations of major-ion, trace-element, nitrate, and Escherichia coli loading to Emigration Creek, Salt Lake County, Utah, October 2005

    USGS Publications Warehouse

    Kimball, Briant A.; Runkel, Robert L.; Walton-Day, Katherine

    2008-01-01

    Housing development and recreational activity in Emigration Canyon have increased substantially since 1980, perhaps causing an observed decrease in water quality of this northern Utah stream located near Salt Lake City. To identify reaches of the stream that contribute to water-quality degradation, a tracer-injection and synoptic-sampling study was done to quantify mass loading of major ions, trace elements, nitrate, and Escherichia coli (E. coli) to the stream. The resulting mass-loading profiles for major ions and trace elements indicate both geologic and anthropogenic inputs to the stream, principally from tributary and spring inflows to the stream at Brigham Fork, Burr Fork, Wagner Spring, Emigration Tunnel Spring, Blacksmith Hollow, and Killyon Canyon. The pattern of nitrate loading does not correspond to the major-ion and trace-element loading patterns. Nitrate levels in the stream did not exceed water-quality standards at the time of synoptic sampling. The majority of nitrate mass loading can be considered related to anthropogenic input, based on the field settings and trends in stable isotope ratios of nitrogen. The pattern of E. coli loading does not correspond to the major-ion, trace-element, or nitrate loading patterns. The majority of E. coli loading was related to anthropogenic sources based on field setting, but a considerable part of the loading also comes from possible animal sources in Killyon Canyon, in Perkins Flat, and in Rotary Park. In this late summer sampling, E. coli concentrations only exceeded water-quality standards in limited sections of the study reach. The mass-loading approach used in this study provides a means to design future studies and to evaluate the loading on a catchment scale.

  6. Trace metals in fugitive dust from unsurfaced roads in the Viburnum Trend resource mining District of Missouri--implementation of a direct-suspension sampling methodology.

    PubMed

    Witt, Emitt C; Wronkiewicz, David J; Pavlowsky, Robert T; Shi, Honglan

    2013-09-01

    Fugitive dust from 18 unsurfaced roadways in Missouri were sampled using a novel cyclonic fugitive dust collector that was designed to obtain suspended bulk samples for analysis. The samples were analyzed for trace metals, Fe and Al, particle sizes, and mineralogy to characterize the similarities and differences between roadways. Thirteen roads were located in the Viburnum Trend (VT) mining district, where there has been a history of contaminant metal loading of local soils; while the remaining five roads were located southwest of the VT district in a similar rural setting, but without any mining or industrial process that might contribute to trace metal enrichment. Comparison of these two groups shows that trace metal concentration is higher for dusts collected in the VT district. Lead is the dominant trace metal found in VT district dusts representing on average 79% of the total trace metal concentration, and was found moderately to strongly enriched relative to unsurfaced roads in the non-VT area. Fugitive road dust concentrations calculated for the VT area substantially exceed the 2008 Federal ambient air standard of 0.15μgm(-3) for Pb. The pattern of trace metal contamination in fugitive dust from VT district roads is similar to trace metal concentrations patterns observed for soils measured more than 40years ago indicating that Pb contamination in the region is persistent as a long-term soil contaminant. Published by Elsevier Ltd.

  7. Mapping the Natchez Trace Parkway

    USGS Publications Warehouse

    Rangoonwala, Amina; Bannister, Terri; Ramsey, Elijah W.

    2011-01-01

    Based on a National Park Service (NPS) landcover classification, a landcover map of the 715-km (444-mile) NPS Natchez Trace Parkway (hereafter referred to as the "Parkway") was created. The NPS landcover classification followed National Vegetation Classification (NVC) protocols. The landcover map, which extended the initial landcover classification to the entire Parkway, was based on color-infrared photography converted to 1-m raster-based digital orthophoto quarter quadrangles, according to U.S. Geological Survey mapping standards. Our goal was to include as many alliance classes as possible in the Parkway landcover map. To reach this goal while maintaining a consistent and quantifiable map product throughout the Parkway extent, a mapping strategy was implemented based on the migration of class-based spectral textural signatures and the congruent progressive refinement of those class signatures along the Parkway. Progressive refinement provided consistent mapping by evaluating the spectral textural distinctiveness of the alliance-association classes, and where necessary, introducing new map classes along the Parkway. By following this mapping strategy, the use of raster-based image processing and geographic information system analyses for the map production provided a quantitative and reproducible product. Although field-site classification data were severely limited, the combination of spectral migration of class membership along the Parkway and the progressive classification strategy produced an organization of alliances that was internally highly consistent. The organization resulted from the natural patterns or alignments of spectral variance and the determination of those spectral patterns that were compositionally similar in the dominant species as NVC alliances. Overall, the mapped landcovers represented the existent spectral textural patterns that defined and encompassed the complex variety of compositional alliances and associations of the Parkway. Based on that mapped representation, forests dominate the Parkway landscape. Grass is the second largest Parkway land cover, followed by scrub-shrub and shrubland classes and pine plantations. The map provides a good representation of the landcover patterns and their changes over the extent of the Parkway, south to north.

  8. Ocular aberrations with ray tracing and Shack-Hartmann wave-front sensors: Does polarization play a role?

    NASA Astrophysics Data System (ADS)

    Marcos, Susana; Diaz-Santana, Luis; Llorente, Lourdes; Dainty, Chris

    2002-06-01

    Ocular aberrations were measured in 71 eyes by using two reflectometric aberrometers, employing laser ray tracing (LRT) (60 eyes) and a Shack-Hartmann wave-front sensor (S-H) (11 eyes). In both techniques a point source is imaged on the retina (through different pupil positions in the LRT or a single position in the S-H). The aberrations are estimated by measuring the deviations of the retinal spot from the reference as the pupil is sampled (in LRT) or the deviations of a wave front as it emerges from the eye by means of a lenslet array (in the S-H). In this paper we studied the effect of different polarization configurations in the aberration measurements, including linearly polarized light and circularly polarized light in the illuminating channel and sampling light in the crossed or parallel orientations. In addition, completely depolarized light in the imaging channel was obtained from retinal lipofuscin autofluorescence. The intensity distribution of the retinal spots as a function of entry (for LRT) or exit pupil (for S-H) depends on the polarization configuration. These intensity patterns show bright corners and a dark area at the pupil center for crossed polarization, an approximately Gaussian distribution for parallel polarization and a homogeneous distribution for the autofluorescence case. However, the measured aberrations are independent of the polarization states. These results indicate that the differences in retardation across the pupil imposed by corneal birefringence do not produce significant phase delays compared with those produced by aberrations, at least within the accuracy of these techniques. In addition, differences in the recorded aerial images due to changes in polarization do not affect the aberration measurements in these reflectometric aberrometers.

  9. Spatial structures in UTLS trace gases imaged by the GLORIA instrument during the TACTS/ESMVal campaign in 2012

    NASA Astrophysics Data System (ADS)

    Guggenmoser, Tobias; Ungermann, Joern; Blank, Joerg; Kleinert, Anne; Grooss, Jens-Uwe; Vogel, Baerbel

    2013-04-01

    The combined TACTS/ESMVal measurement campaign was conducted during August and September 2012. Its objective was to improve our understanding of the UTLS region using a combination of airborne in situ and remote sensing devices. While the focus of TACTS was on exchange processes across the tropopause, ESMVal's objective was to obtain a wide latitude coverage from northern to southern polar regions. The campaign was based in Oberpfaffenhofen (D), with support bases in Sal (CV), Malé (MV), and Cape Town (ZA). A total of 13 scientific flights, ranging in latitude from 65°S to 80°N, were performed aboard the High Altitude and LOng Range (HALO) research aircraft, operated by the German Aerospace Agency (DLR). One of the core instruments was GLORIA, the Gimballed Limb Observer for Radiance Imaging of the Atmosphere. GLORIA is a joint development of Forschungszentrum Jülich and Karlsruher Institut für Technologie. It is an imaging Fourier transform spectrometer in the thermal infrared range, designed to optimize either spatial or spectral resolution, so as to yield data for dynamical as well as chemical analysis. In dynamics mode, the instrument also pans between measurements, making it possible to observe the same target volume from multiple directions. Combined with the right flight pattern, a 3D tomographic analysis becomes possible. In this presentation, we will show our first results for temperature and trace gas mixing ratios from a selection of the TACTS/ESMVal flights, concentrating on dynamics mode measurements in the polar regions. We will show the resolution of filaments in the UTLS region in two-dimensional cross-sections along the flight path, as well as preliminary results from true 3D retrievals.

  10. Imaging trace gases in volcanic plumes with Fabry Perot Interferometers

    NASA Astrophysics Data System (ADS)

    Kuhn, Jonas; Platt, Ulrich; Bobrowski, Nicole; Lübcke, Peter; Wagner, Thomas

    2017-04-01

    Within the last decades, progress in remote sensing of atmospheric trace gases revealed many important insights into physical and chemical processes in volcanic plumes. In particular, their evolution could be studied in more detail than by traditional in-situ techniques. A major limitation of standard techniques for volcanic trace gas remote sensing (e.g. Differential Optical Absorption Spectroscopy, DOAS) is the constraint of the measurement to a single viewing direction since they use dispersive spectroscopy with a high spectral resolution. Imaging DOAS-type approaches can overcome this limitation, but become very time consuming (of the order of minutes to record a single image) and often cannot match the timescales of the processes of interest for volcanic gas measurements (occurring at the order of seconds). Spatially resolved imaging observations with high time resolution for volcanic sulfur dioxide (SO2) emissions became possible with the introduction of the SO2-Camera. Reducing the spectral resolution to two spectral channels (using interference filters) that are matched to the SO2 absorption spectrum, the SO2-Camera is able to record full frame SO2 slant column density distributions at a temporal resolution on the order of < 1s. This for instance allows for studying variations in SO2 fluxes on very short time scales and applying them in magma dynamics models. However, the currently employed SO2-Camera technique is limited to SO2 detection and, due to its coarse spectral resolution, has a limited spectral selectivity. This limits its application to very specific, infrequently found measurement conditions. Here we present a new approach, based on matching the transmission profile of Fabry Perot Interferometers (FPIs) to periodic spectral absorption features of trace gases. The FPI's transmission spectrum is chosen to achieve a high correlation with the spectral absorption of the trace gas, allowing a high selectivity and sensitivity with still using only a few spectral channels. This would not only improve SO2 imaging, but also allow for the application of the technique to further gases of interest in volcanology (and other areas of atmospheric research). Imaging halogen species would be particularly interesting for volcanic trace gas studies. Bromine monoxide (BrO) and chlorine dioxide (OClO) both yield absorption features that allow their detection with the FPI correlation technique. From BrO and OClO data, ClO levels in the plume could be calculated. We present an outline of applications of the FPI technique to imaging a series of trace gases in volcanic plumes. Sample calculations on the sensitivity and selectivity of the technique, first proof of concept studies and proposals for technical implementations are presented.

  11. REDSPEC: NIRSPEC data reduction

    NASA Astrophysics Data System (ADS)

    Kim, S.; Prato, L.; McLean, I.

    2015-07-01

    REDSPEC is an IDL based reduction package designed with NIRSPEC in mind though can be used to reduce data from other spectrographs as well. REDSPEC accomplishes spatial rectification by summing an A+B pair of a calibration star to produce an image with two spectra; the image is remapped on the basis of polynomial fits to the spectral traces and calculation of gaussian centroids to define their separation, producing straight spectral traces with respect to the detector rows. The raw images are remapped onto a coordinate system with uniform intervals in spatial extent along the slit and in wavelength along the dispersion axis.

  12. ANTS — a simulation package for secondary scintillation Anger-camera type detector in thermal neutron imaging

    NASA Astrophysics Data System (ADS)

    Morozov, A.; Defendi, I.; Engels, R.; Fraga, F. A. F.; Fraga, M. M. F. R.; Guerard, B.; Jurkovic, M.; Kemmerling, G.; Manzin, G.; Margato, L. M. S.; Niko, H.; Pereira, L.; Petrillo, C.; Peyaud, A.; Piscitelli, F.; Raspino, D.; Rhodes, N. J.; Sacchetti, F.; Schooneveld, E. M.; Van Esch, P.; Zeitelhack, K.

    2012-08-01

    A custom and fully interactive simulation package ANTS (Anger-camera type Neutron detector: Toolkit for Simulations) has been developed to optimize the design and operation conditions of secondary scintillation Anger-camera type gaseous detectors for thermal neutron imaging. The simulation code accounts for all physical processes related to the neutron capture, energy deposition pattern, drift of electrons of the primary ionization and secondary scintillation. The photons are traced considering the wavelength-resolved refraction and transmission of the output window. Photo-detection accounts for the wavelength-resolved quantum efficiency, angular response, area sensitivity, gain and single-photoelectron spectra of the photomultipliers (PMTs). The package allows for several geometrical shapes of the PMT photocathode (round, hexagonal and square) and offers a flexible PMT array configuration: up to 100 PMTs in a custom arrangement with the square or hexagonal packing. Several read-out patterns of the PMT array are implemented. Reconstruction of the neutron capture position (projection on the plane of the light emission) is performed using the center of gravity, maximum likelihood or weighted least squares algorithm. Simulation results reproduce well the preliminary results obtained with a small-scale detector prototype. ANTS executables can be downloaded from http://coimbra.lip.pt/~andrei/.

  13. Improved attenuation correction for respiratory gated PET/CT with extended-duration cine CT: a simulation study

    NASA Astrophysics Data System (ADS)

    Zhang, Ruoqiao; Alessio, Adam M.; Pierce, Larry A.; Byrd, Darrin W.; Lee, Tzu-Cheng; De Man, Bruno; Kinahan, Paul E.

    2017-03-01

    Due to the wide variability of intra-patient respiratory motion patterns, traditional short-duration cine CT used in respiratory gated PET/CT may be insufficient to match the PET scan data, resulting in suboptimal attenuation correction that eventually compromises the PET quantitative accuracy. Thus, extending the duration of cine CT can be beneficial to address this data mismatch issue. In this work, we propose to use a long-duration cine CT for respiratory gated PET/CT, whose cine acquisition time is ten times longer than a traditional short-duration cine CT. We compare the proposed long-duration cine CT with the traditional short-duration cine CT through numerous phantom simulations with 11 respiratory traces measured during patient PET/CT scans. Experimental results show that, the long-duration cine CT reduces the motion mismatch between PET and CT by 41% and improves the overall reconstruction accuracy by 42% on average, as compared to the traditional short-duration cine CT. The long-duration cine CT also reduces artifacts in PET images caused by misalignment and mismatch between adjacent slices in phase-gated CT images. The improvement in motion matching between PET and CT by extending the cine duration depends on the patient, with potentially greater benefits for patients with irregular breathing patterns or larger diaphragm movements.

  14. Functional Connectivity Mapping in the Animal Model: Principles and Applications of Resting-State fMRI

    PubMed Central

    Gorges, Martin; Roselli, Francesco; Müller, Hans-Peter; Ludolph, Albert C.; Rasche, Volker; Kassubek, Jan

    2017-01-01

    “Resting-state” fMRI has substantially contributed to the understanding of human and non-human functional brain organization by the analysis of correlated patterns in spontaneous activity within dedicated brain systems. Spontaneous neural activity is indirectly measured from the blood oxygenation level-dependent signal as acquired by echo planar imaging, when subjects quietly “resting” in the scanner. Animal models including disease or knockout models allow a broad spectrum of experimental manipulations not applicable in humans. The non-invasive fMRI approach provides a promising tool for cross-species comparative investigations. This review focuses on the principles of “resting-state” functional connectivity analysis and its applications to living animals. The translational aspect from in vivo animal models toward clinical applications in humans is emphasized. We introduce the fMRI-based investigation of the non-human brain’s hemodynamics, the methodological issues in the data postprocessing, and the functional data interpretation from different abstraction levels. The longer term goal of integrating fMRI connectivity data with structural connectomes obtained with tracing and optical imaging approaches is presented and will allow the interrogation of fMRI data in terms of directional flow of information and may identify the structural underpinnings of observed functional connectivity patterns. PMID:28539914

  15. Electroencephalographic characteristics of Iranian schizophrenia patients.

    PubMed

    Chaychi, Irman; Foroughipour, Mohsen; Haghir, Hossein; Talaei, Ali; Chaichi, Ashkan

    2015-12-01

    Schizophrenia is a prevalent psychiatric disease with heterogeneous causes that is diagnosed based on history and mental status examination. Applied electrophysiology is a non-invasive method to investigate the function of the involved brain areas. In a previously understudied population, we examined acute phase electroencephalography (EEG) records along with pertinent Positive and Negative Syndrome Scale (PANSS) and Mini Mental State Examination (MMSE) scores for each patient. Sixty-four hospitalized patients diagnosed to have schizophrenia in Ebn-e-Sina Hospital were included in this study. PANSS and MMSE were completed and EEG tracings for every patient were recorded. Also, EEG tracings were recorded for 64 matched individuals of the control group. Although the predominant wave pattern in both patients and controls was alpha, theta waves were almost exclusively found in eight (12.5 %) patients with schizophrenia. Pathological waves in schizophrenia patients were exclusively found in the frontal brain region, while identified pathological waves in controls were limited to the temporal region. No specific EEG finding supported laterality in schizophrenia patients. PANSS and MMSE scores were significantly correlated with specific EEG parameters (all P values <0.04). Patients with schizophrenia demonstrate specific EEG patterns and show a clear correlation between EEG parameters and PANSS and MMSE scores. These characteristics are not observed in all patients, which imply that despite an acceptable specificity, they are not applicable for the majority of schizophrenia patients. Any deduction drawn based on EEG and scoring systems is in need of larger studies incorporating more patients and using better functional imaging techniques for the brain.

  16. Trace elements in chondritic stratospheric particles - Zinc depletion as a possible indicator of atmospheric entry heating

    NASA Technical Reports Server (NTRS)

    Flynn, G. J.; Sutton, S. R.

    1992-01-01

    Major-element abundances in 11 C, C?, and TCA cosmic dust particles have been measured using SEM and TEM energy dispersive X-ray (EDX) systems. The Fe/Ni ratio, when coupled with major element abundances, appears to be a useful discriminator of cosmic particles. Three particles classified as C?, but having Fe/Ni peak height ratios similar to those measured on the powdered Allende meteorite sample in their HSC EDX spectra, exhibit chondritic minor-/trace-element abundance patterns, suggesting they are extraterrestrial. The one particle classified as C-type, but without detectable Ni in its JSC EDX spectrum, exhibits an apparently nonchondritic minor-/trace-element abundance pattern. A class of particles that are chondritic except for large depletions in the volatile elements Zn and S has been identified. It is likely that these particles condensed with a C1 abundance pattern and that Zn and S were removed by some subsequent process.

  17. A fully-automatic fast segmentation of the sub-basal layer nerves in corneal images.

    PubMed

    Guimarães, Pedro; Wigdahl, Jeff; Poletti, Enea; Ruggeri, Alfredo

    2014-01-01

    Corneal nerves changes have been linked to damage caused by surgical interventions or prolonged contact lens wear. Furthermore nerve tortuosity has been shown to correlate with the severity of diabetic neuropathy. For these reasons there has been an increasing interest on the analysis of these structures. In this work we propose a novel, robust, and fast fully automatic algorithm capable of tracing the sub-basal plexus nerves from human corneal confocal images. We resort to logGabor filters and support vector machines to trace the corneal nerves. The proposed algorithm traced most of the corneal nerves correctly (sensitivity of 0.88 ± 0.06 and false discovery rate of 0.08 ± 0.06). The displayed performance is comparable to a human grader. We believe that the achieved processing time (0.661 ± 0.07 s) and tracing quality are major advantages for the daily clinical practice.

  18. Microbial trace-fossil formation, biogenous, and abiotic weathering in the Antarctic cold desert

    NASA Technical Reports Server (NTRS)

    Friedmann, E. Imre; Weed, Rebecca

    1987-01-01

    In the Antarctic cold desert (Ross Desert), the survival of the cryptoendolithic microorganisms that colonize the near-surface layer of porous sandstone rocks depends on a precarious equilibrium of biological and geological factors. An unfavorable shift of this equilibrium results in death, and this may be followed by formation of trace fossils that preserve the characteristic iron-leaching pattern caused by microbial activity. Similar microbial trace fossils may exist in the geological record. If life ever arose on early Mars, similar processes may have occurred there and left recognizable traces.

  19. Synthetic Image Generator Model; Application of View Angle Dependent Reflectivity Components and Performance Evaluation in the Visible Region

    DTIC Science & Technology

    1993-02-01

    3.1.2. Modeling of Environment ....................... 6 3.1.3. Ray Tracing and Radiosity ..................... 8 3.2. Reflectivity Review...SIG modeling is dependent on proper treatment of its effects. 3.1.3 Ray Tracing and Radiosity Prior to reviewing reflectivity, a brief look is made of...methods of applying complex theoretical energy propagation algorithms. Two such methods are ray tracing and radiosity (Goral, et al, 1984). Ray tracing is a

  20. Modeling prostate anatomy from multiple view TRUS images for image-guided HIFU therapy.

    PubMed

    Penna, Michael A; Dines, Kris A; Seip, Ralf; Carlson, Roy F; Sanghvi, Narendra T

    2007-01-01

    Current planning methods for transrectal high-intensity focused ultrasound treatment of prostate cancer rely on manually defining treatment regions in 15-20 sector transrectal ultrasound (TRUS) images of the prostate. Although effective, it is desirable to reduce user interaction time by identifying functionally related anatomic structures (segmenting), then automatically laying out treatment sites using these structures as a guide. Accordingly, a method has been developed to effectively generate solid three-dimensional (3-D) models of the prostate, urethra, and rectal wall from boundary trace data. Modeling the urethra and rectal wall are straightforward, but modeling the prostate is more difficult and has received much attention in the literature. New results presented here are aimed at overcoming many of the limitations of previous approaches to modeling the prostate while using boundary traces obtained via manual tracing in as few as 5 sector and 3 linear images. The results presented here are based on a new type of surface, the Fourier ellipsoid, and the use of sector and linear TRUS images. Tissue-specific 3-D models will ultimately permit finer control of energy deposition and more selective destruction of cancerous regions while sparing critical neighboring structures.

  1. Gold nanoparticle flow sensors designed for dynamic X-ray imaging in biofluids.

    PubMed

    Ahn, Sungsook; Jung, Sung Yong; Lee, Jin Pyung; Kim, Hae Koo; Lee, Sang Joon

    2010-07-27

    X-ray-based imaging is one of the most powerful and convenient methods in terms of versatility in applicable energy and high performance in use. Different from conventional nuclear medicine imaging, contrast agents are required in X-ray imaging especially for effectively targeted and molecularly specific functions. Here, in contrast to much reported static accumulation of the contrast agents in targeted organs, dynamic visualization in a living organism is successfully accomplished by the particle-traced X-ray imaging for the first time. Flow phenomena across perforated end walls of xylem vessels in rice are monitored by a gold nanoparticle (AuNP) (approximately 20 nm in diameter) as a flow tracing sensor working in nontransparent biofluids. AuNPs are surface-modified to control the hydrodynamic properties such as hydrodynamic size (DH), zeta-potential, and surface plasmonic properties in aqueous conditions. Transmission electron microscopy (TEM), scanning electron microscopy (SEM), X-ray nanoscopy (XN), and X-ray microscopy (XM) are used to correlate the interparticle interactions with X-ray absorption ability. Cluster formation and X-ray contrast ability of the AuNPs are successfully modulated by controlling the interparticle interactions evaluated as flow-tracing sensors.

  2. Structural lineament and pattern analysis of Missouri, using LANDSAT imagery

    NASA Technical Reports Server (NTRS)

    Martin, J. A.; Kisvarsanyi, G. (Principal Investigator)

    1977-01-01

    The author has identified the following significant results. Major linear, circular, and arcuate traces were observed on LANDSAT imagery of Missouri. Lineaments plotted within the state boundaries range from 20 to nearly 500 km in length. Several extend into adjoining states. Lineaments plots indicate a distinct pattern and in general reflect structural features of the Precambrian basement of the platform. Coincidence of lineaments traced from the imagery and known structural features in Missouri is high, thus supporting a causative relation between them. The lineament pattern apparently reveals a fundamental style of the deformation of the intracontinental craton. Dozens of heretofore unknown linear features related to epirogenic movements and deformation of this segment of the continental crust were delineated. Lineaments and mineralization are interrelated in a geometrically classifiable pattern.

  3. Method for producing three-dimensional real image using radiographic perspective views of an object

    DOEpatents

    Ellingson, William A.; Read, Alvin A.

    1976-02-24

    A sequence of separate radiographs are made by indexing a radiation source along a known path relative to the object under study. Thus, each radiograph contains information from a different perspective. A holographically-recorded image is then made from each radiographic perspective by exact re-tracing of the rays through each radiographic perspective such that the re-tracing duplicates the geometry under which it was originally prepared. The holographically-stored images are simultaneously illuminated with the conjugate of the reference beam used in the original recordings. The result is the generation of a three-dimensional real image of the object such that a light-sensitive device can be moved to view the real image along any desired surface with the optical information in all other surfaces greatly suppressed.

  4. The occipital face area is causally involved in the formation of identity-specific face representations.

    PubMed

    Ambrus, Géza Gergely; Dotzer, Maria; Schweinberger, Stefan R; Kovács, Gyula

    2017-12-01

    Transcranial magnetic stimulation (TMS) and neuroimaging studies suggest a role of the right occipital face area (rOFA) in early facial feature processing. However, the degree to which rOFA is necessary for the encoding of facial identity has been less clear. Here we used a state-dependent TMS paradigm, where stimulation preferentially facilitates attributes encoded by less active neural populations, to investigate the role of the rOFA in face perception and specifically in image-independent identity processing. Participants performed a familiarity decision task for famous and unknown target faces, preceded by brief (200 ms) or longer (3500 ms) exposures to primes which were either an image of a different identity (DiffID), another image of the same identity (SameID), the same image (SameIMG), or a Fourier-randomized noise pattern (NOISE) while either the rOFA or the vertex as control was stimulated by single-pulse TMS. Strikingly, TMS to the rOFA eliminated the advantage of SameID over DiffID condition, thereby disrupting identity-specific priming, while leaving image-specific priming (better performance for SameIMG vs. SameID) unaffected. Our results suggest that the role of rOFA is not limited to low-level feature processing, and emphasize its role in image-independent facial identity processing and the formation of identity-specific memory traces.

  5. Juan Valverde de Hamusco's unauthorized reproduction of a brain dissection by Andreas Vesalius.

    PubMed

    Lanska, Douglas J; Lanska, John R

    2013-02-26

    The objective of the present work is to examine images of the brain dissection by Flemish-born anatomist Andreas Vesalius (1514-1564) as originally represented in the Fabrica (1543), and later copied without Vesalius' permission by Spanish anatomist Juan Valverde de Hamusco (c1525-c1587) in Historia de la composicion del cuerpo humano (1556). Illustrations of the brain dissection in the Fabrica were obtained in digital form, resized, and arranged in a comparable montage to that presented by Valverde. Computer manipulations were used to assess image correspondence. The Valverde illustrations are approximately half the size and are mirror images of those in the Fabrica, but otherwise show the same dissection stages, and identical transverse brain levels and structures. The Valverde illustrations lack shadowing and show minor variations in perspective and fine details (e.g., branching pattern of the middle meningeal artery) from those in the Fabrica. Craftsmen under the direction of Valverde copied the woodcut prints in the Fabrica in close but approximate form by freehand engraving onto copper plates. Differences in the sizes of the images, and in perspective and fine detail, preclude direct tracing of images as the means of copying. Because engravings are in effect "flipped over" to make further prints, subsequent prints made from Valverde's copperplate engravings are mirror images of the prints in Vesalius' Fabrica.

  6. Fast in-situ tool inspection based on inverse fringe projection and compact sensor heads

    NASA Astrophysics Data System (ADS)

    Matthias, Steffen; Kästner, Markus; Reithmeier, Eduard

    2016-11-01

    Inspection of machine elements is an important task in production processes in order to ensure the quality of produced parts and to gather feedback for the continuous improvement process. A new measuring system is presented, which is capable of performing the inspection of critical tool geometries, such as gearing elements, inside the forming machine. To meet the constraints on sensor head size and inspection time imposed by the limited space inside the machine and the cycle time of the process, the measuring device employs a combination of endoscopy techniques with the fringe projection principle. Compact gradient index lenses enable a compact design of the sensor head, which is connected to a CMOS camera and a flexible micro-mirror based projector via flexible fiber bundles. Using common fringe projection patterns, the system achieves measuring times of less than five seconds. To further reduce the time required for inspection, the generation of inverse fringe projection patterns has been implemented for the system. Inverse fringe projection speeds up the inspection process by employing object-adapted patterns, which enable the detection of geometry deviations in a single image. Two different approaches to generate object adapted patterns are presented. The first approach uses a reference measurement of a manufactured tool master to generate the inverse pattern. The second approach is based on a virtual master geometry in the form of a CAD file and a ray-tracing model of the measuring system. Virtual modeling of the measuring device and inspection setup allows for geometric tolerancing for free-form surfaces by the tool designer in the CAD-file. A new approach is presented, which uses virtual tolerance specifications and additional simulation steps to enable fast checking of metric tolerances. Following the description of the pattern generation process, the image processing steps required for inspection are demonstrated on captures of gearing geometries.

  7. Sulcal Polymorphisms of the IFC and ACC Contribute to Inhibitory Control Variability in Children and Adults

    PubMed Central

    Linzarini, Adriano; Dollfus, Sonia; Etard, Olivier; Orliac, François; Houdé, Olivier

    2018-01-01

    Abstract Inhibitory control (IC) is a core executive function that enables humans to resist habits, temptations, or distractions. IC efficiency in childhood is a strong predictor of academic and professional success later in life. Based on analysis of the sulcal pattern, a qualitative feature of cortex anatomy determined during fetal life and stable during development, we searched for evidence that interindividual differences in IC partly trace back to prenatal processes. Using anatomical magnetic resonance imaging (MRI), we analyzed the sulcal pattern of two key regions of the IC neural network, the dorsal anterior cingulate cortex (ACC) and the inferior frontal cortex (IFC), which limits the inferior frontal gyrus. We found that the sulcal pattern asymmetry of both the ACC and IFC contributes to IC (Stroop score) in children and adults: participants with asymmetrical ACC or IFC sulcal patterns had better IC efficiency than participants with symmetrical ACC or IFC sulcal patterns. Such additive effects of IFC and ACC sulcal patterns on IC efficiency suggest that distinct early neurodevelopmental mechanisms targeting different brain regions likely contribute to IC efficiency. This view shares some analogies with the “common variant–small effect” model in genetics, which states that frequent genetic polymorphisms have small effects but collectively account for a large portion of the variance. Similarly, each sulcal polymorphism has a small but additive effect: IFC and ACC sulcal patterns, respectively, explained 3% and 14% of the variance of the Stroop interference scores. PMID:29527565

  8. Sulcal Polymorphisms of the IFC and ACC Contribute to Inhibitory Control Variability in Children and Adults.

    PubMed

    Tissier, Cloélia; Linzarini, Adriano; Allaire-Duquette, Geneviève; Mevel, Katell; Poirel, Nicolas; Dollfus, Sonia; Etard, Olivier; Orliac, François; Peyrin, Carole; Charron, Sylvain; Raznahan, Armin; Houdé, Olivier; Borst, Grégoire; Cachia, Arnaud

    2018-01-01

    Inhibitory control (IC) is a core executive function that enables humans to resist habits, temptations, or distractions. IC efficiency in childhood is a strong predictor of academic and professional success later in life. Based on analysis of the sulcal pattern, a qualitative feature of cortex anatomy determined during fetal life and stable during development, we searched for evidence that interindividual differences in IC partly trace back to prenatal processes. Using anatomical magnetic resonance imaging (MRI), we analyzed the sulcal pattern of two key regions of the IC neural network, the dorsal anterior cingulate cortex (ACC) and the inferior frontal cortex (IFC), which limits the inferior frontal gyrus. We found that the sulcal pattern asymmetry of both the ACC and IFC contributes to IC (Stroop score) in children and adults: participants with asymmetrical ACC or IFC sulcal patterns had better IC efficiency than participants with symmetrical ACC or IFC sulcal patterns. Such additive effects of IFC and ACC sulcal patterns on IC efficiency suggest that distinct early neurodevelopmental mechanisms targeting different brain regions likely contribute to IC efficiency. This view shares some analogies with the "common variant-small effect" model in genetics, which states that frequent genetic polymorphisms have small effects but collectively account for a large portion of the variance. Similarly, each sulcal polymorphism has a small but additive effect: IFC and ACC sulcal patterns, respectively, explained 3% and 14% of the variance of the Stroop interference scores.

  9. Forensic identification of resampling operators: A semi non-intrusive approach.

    PubMed

    Cao, Gang; Zhao, Yao; Ni, Rongrong

    2012-03-10

    Recently, several new resampling operators have been proposed and successfully invalidate the existing resampling detectors. However, the reliability of such anti-forensic techniques is unaware and needs to be investigated. In this paper, we focus on the forensic identification of digital image resampling operators including the traditional type and the anti-forensic type which hides the trace of traditional resampling. Various resampling algorithms involving geometric distortion (GD)-based, dual-path-based and postprocessing-based are investigated. The identification is achieved in the manner of semi non-intrusive, supposing the resampling software could be accessed. Given an input pattern of monotone signal, polarity aberration of GD-based resampled signal's first derivative is analyzed theoretically and measured by effective feature metric. Dual-path-based and postprocessing-based resampling can also be identified by feeding proper test patterns. Experimental results on various parameter settings demonstrate the effectiveness of the proposed approach. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

  10. The New Worlds Observer: The Astrophysics Strategic Mission Concept Study

    DTIC Science & Technology

    2009-08-01

    of galaxies and galaxy clusters • Tracing the cosmic evolution of dark energy • Mapping the distribution of dark matter • Characterization of the...imaging of these fields will be used to map the distribution of dark matter us- ing the distortions of galaxy images produced by weak gravitational...dedicated to specific science goals such as mapping dark matter , tracing dark energy, or prob- ing star formation in the local Universe. In the dif

  11. Al-26, Pu-244, Ti-50, REE, and trace element abundances in hibonite grains from CM and CV meteorites

    NASA Technical Reports Server (NTRS)

    Fahey, A. J.; Mckeegan, K. D.; Zinner, E.; Goswami, J. N.

    1987-01-01

    Hibonites from the CM meteorites Murchison, Murray, and Cold Bokkeveld, and hibonites and Ti-rich pyroxene from the CV chondrite Allende are studied. Electron microprobe measurements of major element concentrations and track and ion probe measurements of Mg and Ti isotopic ratios, rare earth elements (REEs), and trace element abundances are analyzed. Correlations between isotopic anomalies in Ti, Al-26, Pu-244, and Mg-26(asterisk) are examined. Ti isotopic anomalies are compared with REE and trace element abundance patterns. Reasons for the lack of Al-26 in the hibonites are investigated and discussed. It is observed that there is no correlation between the Ti isotopic compositions, and the presence of Mg-26(asterisk), Pu-244, and REE and trace element patterns in individual hibonite samples. The data reveal that hibonites are not interstellar dust grains but formed on a short time scale and in localized regions of the early solar system.

  12. A Cost-Effective Transparency-Based Digital Imaging for Efficient and Accurate Wound Area Measurement

    PubMed Central

    Li, Pei-Nan; Li, Hong; Wu, Mo-Li; Wang, Shou-Yu; Kong, Qing-You; Zhang, Zhen; Sun, Yuan; Liu, Jia; Lv, De-Cheng

    2012-01-01

    Wound measurement is an objective and direct way to trace the course of wound healing and to evaluate therapeutic efficacy. Nevertheless, the accuracy and efficiency of the current measurement methods need to be improved. Taking the advantages of reliability of transparency tracing and the accuracy of computer-aided digital imaging, a transparency-based digital imaging approach is established, by which data from 340 wound tracing were collected from 6 experimental groups (8 rats/group) at 8 experimental time points (Day 1, 3, 5, 7, 10, 12, 14 and 16) and orderly archived onto a transparency model sheet. This sheet was scanned and its image was saved in JPG form. Since a set of standard area units from 1 mm2 to 1 cm2 was integrated into the sheet, the tracing areas in JPG image were measured directly, using the “Magnetic lasso tool” in Adobe Photoshop program. The pixel values/PVs of individual outlined regions were obtained and recorded in an average speed of 27 second/region. All PV data were saved in an excel form and their corresponding areas were calculated simultaneously by the formula of Y (PV of the outlined region)/X (PV of standard area unit) × Z (area of standard unit). It took a researcher less than 3 hours to finish area calculation of 340 regions. In contrast, over 3 hours were expended by three skillful researchers to accomplish the above work with traditional transparency-based method. Moreover, unlike the results obtained traditionally, little variation was found among the data calculated by different persons and the standard area units in different sizes and shapes. Given its accurate, reproductive and efficient properties, this transparency-based digital imaging approach would be of significant values in basic wound healing research and clinical practice. PMID:22666449

  13. Trace element profiles in modern horse molar enamel as tracers of seasonality: Evidence from micro-XRF, LA-ICP-MS and stable isotope analysis

    NASA Astrophysics Data System (ADS)

    de Winter, Niels; Goderis, Steven; van Malderen, Stijn; Vanhaecke, Frank; Claeys, Philippe

    2016-04-01

    A combination of laboratory micro-X-ray Fluorescence (μXRF) and stable carbon and oxygen isotope analysis shows that trace element profiles from modern horse molars reveal a seasonal pattern that co-varies with seasonality in the oxygen isotope records of enamel carbonate from the same teeth. A combination of six cheek teeth (premolars and molars) from the same individual yields a seasonal isotope and trace element record of approximately three years recorded during the growth of the molars. This record shows that reproducible measurements of various trace element ratios (e.g., Sr/Ca, Zn/Ca, Fe/Ca, K/Ca and S/Ca) lag the seasonal pattern in oxygen isotope records by 2-3 months. Laser Ablation-ICP-Mass Spectrometry (LA-ICP-MS) analysis on a cross-section of the first molar of the same individual is compared to the bench-top tube-excitation μXRF results to test the robustness of the measurements and to compare both methods. Furthermore, trace element (e.g. Sr, Zn, Mg & Ba) profiles perpendicular to the growth direction of the same tooth, as well as profiles parallel to the growth direction are measured with LA-ICP-MS and μXRF to study the internal distribution of trace element ratios in two dimensions. Results of this extensive complementary line-scanning procedure shows the robustness of state of the art laboratory micro-XRF scanning for the measurement of trace elements in bioapatite. The comparison highlights the advantages and disadvantages of both methods for trace element analysis and illustrates their complementarity. Results of internal variation within the teeth shed light on the origins of trace elements in mammal teeth and their potential use for paleo-environmental reconstruction.

  14. On the offshore dispersal of the Amazon's Plume in the North Atlantic: Comments on the paper by A. Longhurst, ``Seasonal cooling and blooming in tropical oceans''

    NASA Astrophysics Data System (ADS)

    Muller-Karger, F. E.; Richardson, P. L.; Mcgillicuddy, D.

    1995-11-01

    Coastal Zone Color Scanner (CZCS) satellite images show extensive plumes of discolored water extending from South America into the western tropical Atlantic. The most conspicuous plumes originate at the mouths of the Amazon and Orinoco Rivers, and plumes originating at smaller rivers can also be seen from space. In a recent paper by Longhurst (1993), the plume associated with the Amazon River was attributed to phytoplankton blooms stimulated by nutrients supplied via eddy upwelling. We revisit the argument that this plume is of riverine origin, and offer evidence that material present near continental margins can be advected offshore and trace circulation patterns in the adjacent ocean.

  15. Single-Drop Raman Imaging Exposes the Trace Contaminants in Milk.

    PubMed

    Tan, Zong; Lou, Ting-Ting; Huang, Zhi-Xuan; Zong, Jing; Xu, Ke-Xin; Li, Qi-Feng; Chen, Da

    2017-08-02

    Better milk safety control can offer important means to promote public health. However, few technologies can detect different types of contaminants in milk simultaneously. In this regard, the present work proposes a single-drop Raman imaging (SDRI) strategy for semiquantitation of multiple hazardous factors in milk solutions. By developing SDRI strategy that incorporates the coffee-ring effect (a natural phenomenon often presents in a condensed circle pattern after a drop evaporated) for sample pretreatment and discrete wavelet transform for spectra processing, the method serves well to expose typical hazardous molecular species in milk products, such as melamine, sodium thiocyanate and lincomycin hydrochloride, with little sample preparation. The detection sensitivity for melamine, sodium thiocyanate, and lincomycin hydrochloride are 0.1 mg kg -1 , 1 mg kg -1 , and 0.1 mg kg -1 , respectively. Theoretically, we establish that the SDRI represents a novel and environment-friendly method that screens the milk safety efficiently, which could be well extended to inspection of other food safety.

  16. Using animation quality metric to improve efficiency of global illumination computation for dynamic environments

    NASA Astrophysics Data System (ADS)

    Myszkowski, Karol; Tawara, Takehiro; Seidel, Hans-Peter

    2002-06-01

    In this paper, we consider applications of perception-based video quality metrics to improve the performance of global lighting computations for dynamic environments. For this purpose we extend the Visible Difference Predictor (VDP) developed by Daly to handle computer animations. We incorporate into the VDP the spatio-velocity CSF model developed by Kelly. The CSF model requires data on the velocity of moving patterns across the image plane. We use the 3D image warping technique to compensate for the camera motion, and we conservatively assume that the motion of animated objects (usually strong attractors of the visual attention) is fully compensated by the smooth pursuit eye motion. Our global illumination solution is based on stochastic photon tracing and takes advantage of temporal coherence of lighting distribution, by processing photons both in the spatial and temporal domains. The VDP is used to keep noise inherent in stochastic methods below the sensitivity level of the human observer. As a result a perceptually-consistent quality across all animation frames is obtained.

  17. Analysis of crevasse patterns on Helheim and Kangerdlugssuaq Glaciers in Greenland

    NASA Astrophysics Data System (ADS)

    Udell, K.; Walker, C. C.; Schmidt, B. E.

    2017-12-01

    As a tidewater glacier flows through a valley, it accumulates fractures that provide qualitative information on how glacier thickness, climate forcing, and areas of compression and extension conspire within the ice. These fracture patterns remain and evolve on the glacier, and rapid changes in the pattern can be indicative of a transition in the movement of the glacier. Not only can the fractures provide qualitative information about a glacier, they can also provide quantitative information that allows for the calculation of the stress field and dynamics that the ice experiences. Helheim and Kangerdlugssuaq both terminate in the ocean, potentially providing information on the transition from solid glacier to mélange, which is an important but not well understood process. Using satellite imagery, we traced surface crevasses present along each glacier for available images between 2001-2016 using geospatial software QGIS. We also qualitatively tracked any surface melt ponds present, and monitored for large fractures or regions of the terminus that appeared to be susceptible to or currently calving. With the trace maps, we will use spatial analysis techniques to allow us to quantify the visible patterns and compare the information from year to year and glacier to glacier. Once we can quantitatively describe fracture density in different areas of the glacier, we will also be able to better describe the transition within the glacier from solid mass to highly-fractured and collapsing. Having this data for each glacier allows for comparisons to be made within regions of individual glaciers as well as between glaciers. Using this information, we can answer questions about the relationship between density and pattern of fractures to the stability of the terminus, the stresses that drive glacial fractures, and what effects climate has on glacier dynamics and calving. Preliminary observations include the increasing prevalence of melt ponds beginning in 2004 as well as the retreat of the terminus during the same period. More recently the location of the terminus has remained relatively constant. Overall, understanding the processes of glacial fracturing has implications for both better understanding climate change and analyzing ice fracturing on other planetary bodies such as Europa.

  18. Active learning of neuron morphology for accurate automated tracing of neurites

    PubMed Central

    Gala, Rohan; Chapeton, Julio; Jitesh, Jayant; Bhavsar, Chintan; Stepanyants, Armen

    2014-01-01

    Automating the process of neurite tracing from light microscopy stacks of images is essential for large-scale or high-throughput quantitative studies of neural circuits. While the general layout of labeled neurites can be captured by many automated tracing algorithms, it is often not possible to differentiate reliably between the processes belonging to different cells. The reason is that some neurites in the stack may appear broken due to imperfect labeling, while others may appear fused due to the limited resolution of optical microscopy. Trained neuroanatomists routinely resolve such topological ambiguities during manual tracing tasks by combining information about distances between branches, branch orientations, intensities, calibers, tortuosities, colors, as well as the presence of spines or boutons. Likewise, to evaluate different topological scenarios automatically, we developed a machine learning approach that combines many of the above mentioned features. A specifically designed confidence measure was used to actively train the algorithm during user-assisted tracing procedure. Active learning significantly reduces the training time and makes it possible to obtain less than 1% generalization error rates by providing few training examples. To evaluate the overall performance of the algorithm a number of image stacks were reconstructed automatically, as well as manually by several trained users, making it possible to compare the automated traces to the baseline inter-user variability. Several geometrical and topological features of the traces were selected for the comparisons. These features include the total trace length, the total numbers of branch and terminal points, the affinity of corresponding traces, and the distances between corresponding branch and terminal points. Our results show that when the density of labeled neurites is sufficiently low, automated traces are not significantly different from manual reconstructions obtained by trained users. PMID:24904306

  19. Prospective Out-of-ecliptic White-light Imaging of Interplanetary Corotating Interaction Regions at Solar Maximum

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Xiong, Ming; Yang, Liping; Liu, Ying D.

    Interplanetary corotating interaction regions (CIRs) can be remotely imaged in white light (WL), as demonstrated by the Solar Mass Ejection Imager (SMEI) on board the Coriolis spacecraft and Heliospheric Imagers (HIs) on board the twin Solar TErrestrial RElations Observatory ( STEREO ) spacecraft. The interplanetary WL intensity, due to Thomson scattering of incident sunlight by free electrons, is jointly determined by the 3D distribution of electron number density and line-of-sight (LOS) weighting factors of the Thomson-scattering geometry. The 2D radiance patterns of CIRs in WL sky maps look very different from different 3D viewpoints. Because of the in-ecliptic locations ofmore » both the STEREO and Coriolis spacecraft, the longitudinal dimension of interplanetary CIRs has, up to now, always been integrated in WL imagery. To synthesize the WL radiance patterns of CIRs from an out-of-ecliptic (OOE) vantage point, we perform forward magnetohydrodynamic modeling of the 3D inner heliosphere during Carrington Rotation CR1967 at solar maximum. The mixing effects associated with viewing 3D CIRs are significantly minimized from an OOE viewpoint. Our forward modeling results demonstrate that OOE WL imaging from a latitude greater than 60° can (1) enable the garden-hose spiral morphology of CIRs to be readily resolved, (2) enable multiple coexisting CIRs to be differentiated, and (3) enable the continuous tracing of any interplanetary CIR back toward its coronal source. In particular, an OOE view in WL can reveal where nascent CIRs are formed in the extended corona and how these CIRs develop in interplanetary space. Therefore, a panoramic view from a suite of wide-field WL imagers in a solar polar orbit would be invaluable in unambiguously resolving the large-scale longitudinal structure of CIRs in the 3D inner heliosphere.« less

  20. Imaging of arsenic traces in human hair by nano-SIMS 50

    NASA Astrophysics Data System (ADS)

    Audinot, J.-N.; Schneider, S.; Yegles, M.; Hallegot, P.; Wennig, R.; Migeon, H.-N.

    2004-06-01

    The nano-SIMS 50 allows ion imaging to be performed on microtomed hair cross-sections in order to determine the concentration and to localize the distribution of arsenic traces in hairs. Our study shows a linear relationship between the SIMS signal (As normalized with respect to CN) and the concentration determined by other analytical techniques. The advantages of SIMS imaging can be clearly proved by the capability to record quantitative distributions of As in the cross section. As a matter of fact, the nano-SIMS 50 images may allow differentiation between As located in the medulla, the cortex and the cuticle of the hair and thus distinguish between intoxication by indigestion and surface pollution of the sample.

  1. Surface rupture and vertical deformation associated with 20 May 2016 M6 Petermann Ranges earthquake, Northern Territory, Australia

    NASA Astrophysics Data System (ADS)

    Gold, Ryan; Clark, Dan; King, Tamarah; Quigley, Mark

    2017-04-01

    Surface-rupturing earthquakes in stable continental regions (SCRs) occur infrequently, though when they occur in heavily populated regions the damage and loss of life can be severe (e.g., 2001 Bhuj earthquake). Quantifying the surface-rupture characteristics of these low-probability events is therefore important, both to improve understanding of the on- and off-fault deformation field near the rupture trace and to provide additional constraints on earthquake magnitude to rupture length and displacement, which are critical inputs for seismic hazard calculations. This investigation focuses on the 24 August 2016 M6.0 Petermann Ranges earthquake, Northern Territory, Australia. We use 0.3-0.5 m high-resolution optical Worldview satellite imagery to map the trace of the surface rupture associated with the earthquake. From our mapping, we are able to trace the rupture over a length of 20 km, trending NW, and exhibiting apparent north-side-up motion. To quantify the magnitude of vertical surface deformation, we use stereo Worldview images processed using NASA Ames Stereo Pipeline software to generate pre- and post-earthquake digital terrain models with a spatial resolution of 1.5 to 2 m. The surface scarp is apparent in much of the post-event digital terrain model. Initial efforts to difference the pre- and post-event digital terrain models yield noisy results, though we detect vertical deformation of 0.2 to 0.6 m over length scales of 100 m to 1 km from the mapped trace of the rupture. Ongoing efforts to remove ramps and perform spatial smoothing will improve our understanding of the extent and pattern of vertical deformation. Additionally, we will compare our results with InSAR and field measurements obtained following the earthquake.

  2. Comparison of measurements from different radio-echo sounding systems and synchronization with the ice core at Dome C, Antarctica

    NASA Astrophysics Data System (ADS)

    Winter, Anna; Steinhage, Daniel; Arnold, Emily J.; Blankenship, Donald D.; Cavitte, Marie G. P.; Corr, Hugh F. J.; Paden, John D.; Urbini, Stefano; Young, Duncan A.; Eisen, Olaf

    2017-03-01

    We present a compilation of radio-echo sounding (RES) measurements of five radar systems (AWI, BAS, CReSIS, INGV and UTIG) around the EPICA Dome C (EDC) drill site, East Antarctica. The aim of our study is to investigate the differences of the various systems in their resolution of internal reflection horizons (IRHs) and bed topography, penetration depth and capacity of imaging the basal layer. We address the questions of the compatibility of existing radar data for common interpretation and the suitability of the individual systems for reconnaissance surveys. We find that the most distinct IRHs and IRH patterns can be identified and transferred between most data sets. Considerable differences between the RES systems exist in range resolution and depiction of the bottom-most region. Considering both aspects, which we judge as crucial factors in the search for old ice, the CReSIS and the UTIG systems are the most suitable ones. In addition to the RES data set comparison we calculate a synthetic radar trace from EDC density and conductivity profiles. We identify 10 common IRHs in the measured RES data and the synthetic trace. We then conduct a sensitivity study for which we remove certain peaks from the input conductivity profile. As a result the respective reflections disappear from the modeled radar trace. In this way, we establish a depth conversion of the measured travel times of the IRHs. Furthermore, we use these sensitivity studies to investigate the cause of observed reflections. The identified IRHs are assigned ages from the EDC's timescale. Due to the isochronous character of these conductivity-caused IRHs, they are a means to extend the Dome C age structure by tracing the IRHs along the RES profiles.

  3. AXAF-1 high-resolution mirror assembly image model and comparison with x-ray ground-test image

    NASA Astrophysics Data System (ADS)

    Zissa, David E.

    1999-09-01

    The completed High Resolution Mirror Assembly (HRMA) of the Advanced X-ray Astrophysics Facility - Imaging (AXAF-I) was tested at the X-ray Calibration Facility (XRCF) at the NASA- Marshall Space Flight Center (MSFC) in 1997. The MSFC image model was developed during the development of AXAF-I. The MSFC model is a detailed ray-trace model of the as-built HRMA optics and the XRCF teste conditions. The image encircled-energy distributions from the model are found to general agree well with XRCF test data nd the preliminary Smithsonian Astrophysical Observatory (SAO) model. MSFC model effective-area result generally agree with those of the preliminary SAO model. Preliminary model effective-area results were reported by SAO to be approximately 5-13 percent above initial XRCF test results. The XRCF test conditions are removed from the MSFC ray-trace model to derive an on-orbit prediction of the HRMA image.

  4. Improved Line Tracing Methods for Removal of Bad Streaks Noise in CCD Line Array Image—A Case Study with GF-1 Images

    PubMed Central

    Wang, Bo; Bao, Jianwei; Wang, Shikui; Wang, Houjun; Sheng, Qinghong

    2017-01-01

    Remote sensing images could provide us with tremendous quantities of large-scale information. Noise artifacts (stripes), however, made the images inappropriate for vitalization and batch process. An effective restoration method would make images ready for further analysis. In this paper, a new method is proposed to correct the stripes and bad abnormal pixels in charge-coupled device (CCD) linear array images. The method involved a line tracing method, limiting the location of noise to a rectangular region, and corrected abnormal pixels with the Lagrange polynomial algorithm. The proposed detection and restoration method were applied to Gaofen-1 satellite (GF-1) images, and the performance of this method was evaluated by omission ratio and false detection ratio, which reached 0.6% and 0%, respectively. This method saved 55.9% of the time, compared with traditional method. PMID:28441754

  5. Temperature, Pressure, and Infrared Image Survey of an Axisymmetric Heated Exhaust Plume

    NASA Technical Reports Server (NTRS)

    Nelson, Edward L.; Mahan, J. Robert; Birckelbaw, Larry D.; Turk, Jeffrey A.; Wardwell, Douglas A.; Hange, Craig E.

    1996-01-01

    The focus of this research is to numerically predict an infrared image of a jet engine exhaust plume, given field variables such as temperature, pressure, and exhaust plume constituents as a function of spatial position within the plume, and to compare this predicted image directly with measured data. This work is motivated by the need to validate computational fluid dynamic (CFD) codes through infrared imaging. The technique of reducing the three-dimensional field variable domain to a two-dimensional infrared image invokes the use of an inverse Monte Carlo ray trace algorithm and an infrared band model for exhaust gases. This report describes an experiment in which the above-mentioned field variables were carefully measured. Results from this experiment, namely tables of measured temperature and pressure data, as well as measured infrared images, are given. The inverse Monte Carlo ray trace technique is described. Finally, experimentally obtained infrared images are directly compared to infrared images predicted from the measured field variables.

  6. Orthopyroxene as a recorder of primitive achondrite petrogenesis: Major-, minor-, and trace-element systematics of orthopyroxene in Lodran. [Abstract only

    NASA Technical Reports Server (NTRS)

    Papike, J. J.; Spilde, M. N.; Fowler, G. W.; Shearer, C. K.

    1994-01-01

    Considerable attention has been paid recently to the primitive achondrites because they may form a link between chondrites and more differentiated achondrite meteorites. A recent paper by Miyamoto and Takeda addresses the thermal history of lodranites Yamato 74357 and MAC 88177 as inferred from chemical zoning of pyroxene and olivine determined by electron microprobe analyses. Their results suggested that interstitial melt was present and then extracted. We have taken the analysis of Lodran-type meteorites one step further by incorporating the techniques of Electromagnetic Pulse/Wavelength Dispersive Spectroscopy (EMP/WDS) compositional imaging and scanning ion mass spectroscopy (SIMS) analysis. Orthopyroxene in Lodran is strongly zoned in CaO, Al2O3, TiO2, and Cr2O3 within the last 10-30 microns from the grain boundaries. The rims are reversely zoned in Mg-Fe, exhibiting Mg enrichment, and compositions change from a fairly uniform Wo3En94 within the grains to Wo1En96 at the rims. CaO drops from 1.6 to 0.6 wt% and Al2O3, TiO2, and Cr2O3 exhibit similar depletions. MnO is fairly uniform throughout the grains at around 0.5 wt%. Olivine is also reversely zoned with respect to not only grain boundaries but also to fractures within the grains, giving many olivine grains a complex, patchy zoning pattern. Some of the core-rim trace-element systematics for orthopyroxene are illustrated. Because of the rather narrow zoned rims in Lodran orthopyroxene and the low trace-element abundances, it is difficult to clearly resolve the trace-element systematics. Nevertheless it is evident that the cores are enriched in the incompatible trace elements Ce, Nd, Dy, Er, Yb, Y, and Zr relative to the rims.

  7. Scale invariant SURF detector and automatic clustering segmentation for infrared small targets detection

    NASA Astrophysics Data System (ADS)

    Zhang, Haiying; Bai, Jiaojiao; Li, Zhengjie; Liu, Yan; Liu, Kunhong

    2017-06-01

    The detection and discrimination of infrared small dim targets is a challenge in automatic target recognition (ATR), because there is no salient information of size, shape and texture. Many researchers focus on mining more discriminative information of targets in temporal-spatial. However, such information may not be available with the change of imaging environments, and the targets size and intensity keep changing in different imaging distance. So in this paper, we propose a novel research scheme using density-based clustering and backtracking strategy. In this scheme, the speeded up robust feature (SURF) detector is applied to capture candidate targets in single frame at first. And then, these points are mapped into one frame, so that target traces form a local aggregation pattern. In order to isolate the targets from noises, a newly proposed density-based clustering algorithm, fast search and find of density peak (FSFDP for short), is employed to cluster targets by the spatial intensive distribution. Two important factors of the algorithm, percent and γ , are exploited fully to determine the clustering scale automatically, so as to extract the trace with highest clutter suppression ratio. And at the final step, a backtracking algorithm is designed to detect and discriminate target trace as well as to eliminate clutter. The consistence and continuity of the short-time target trajectory in temporal-spatial is incorporated into the bounding function to speed up the pruning. Compared with several state-of-arts methods, our algorithm is more effective for the dim targets with lower signal-to clutter ratio (SCR). Furthermore, it avoids constructing the candidate target trajectory searching space, so its time complexity is limited to a polynomial level. The extensive experimental results show that it has superior performance in probability of detection (Pd) and false alarm suppressing rate aiming at variety of complex backgrounds.

  8. Investigation on the separability of slums by multi-aspect TerraSAR-X dual-co-polarized high resolution spotlight images based on the multi-scale evaluation of local distributions

    NASA Astrophysics Data System (ADS)

    Schmitt, Andreas; Sieg, Tobias; Wurm, Michael; Taubenböck, Hannes

    2018-02-01

    Following recent advances in distinguishing settlements vs. non-settlement areas from latest SAR data, the question arises whether a further automatic intra-urban delineation and characterization of different structural types is possible. This paper studies the appearance of the structural type ;slums; in high resolution SAR images. Geocoded Kennaugh elements are used as backscatter information and Schmittlet indices as descriptor of local texture. Three cities with a significant share of slums (Cape Town, Manila, Mumbai) are chosen as test sites. These are imaged by TerraSAR-X in the dual-co-polarized high resolution spotlight mode in any available aspect angle. Representative distributions are estimated and fused by a robust approach. Our observations identify a high similarity of slums throughout all three test sites. The derived similarity maps are validated with reference data sets from visual interpretation and ground truth. The final validation strategy is based on completeness and correctness versus other classes in relation to the similarity. High accuracies (up to 87%) in identifying morphologic slums are reached for Cape Town. For Manila (up to 60%) and Mumbai (up to 54%), the distinction is more difficult due to their complex structural configuration. Concluding, high resolution SAR data can be suitable to automatically trace potential locations of slums. Polarimetric information and the incidence angle seem to have a negligible impact on the results whereas the intensity patterns and the passing direction of the satellite are playing a key role. Hence, the combination of intensity images (brightness) acquired from ascending and descending orbits together with Schmittlet indices (spatial pattern) promises best results. The transfer from the automatically recognized physical similarity to the semantic interpretation remains challenging.

  9. Ultrastructurally-smooth thick partitioning and volume stitching for larger-scale connectomics

    PubMed Central

    Hayworth, Kenneth J.; Xu, C. Shan; Lu, Zhiyuan; Knott, Graham W.; Fetter, Richard D.; Tapia, Juan Carlos; Lichtman, Jeff W.; Hess, Harald F.

    2015-01-01

    FIB-SEM has become an essential tool for studying neural tissue at resolutions below 10×10×10 nm, producing datasets superior for automatic connectome tracing. We present a technical advance, ultrathick sectioning, which reliably subdivides embedded tissue samples into chunks (20 µm thick) optimally sized and mounted for efficient, parallel FIB-SEM imaging. These chunks are imaged separately and then ‘volume stitched’ back together, producing a final 3D dataset suitable for connectome tracing. PMID:25686390

  10. Simulation and optimization of volume holographic imaging systems in Zemax.

    PubMed

    Wissmann, Patrick; Oh, Se Baek; Barbastathis, George

    2008-05-12

    We present a new methodology for ray-tracing analysis of volume holographic imaging (VHI) systems. Using the k-sphere formulation, we apply geometrical relationships to describe the volumetric diffraction effects imposed on rays passing through a volume hologram. We explain the k-sphere formulation in conjunction with ray tracing process and describe its implementation in a Zemax UDS (User Defined Surface). We conclude with examples of simulation and optimization results and show proof of consistency and usefulness of the proposed model.

  11. Water-quality assessment of part of the Upper Mississippi River Basin, Minnesota and Wisconsin: Trace elements in streambed sediment and fish livers, 1995-96

    USGS Publications Warehouse

    Kroening, Sharon E.; Fallon, James D.; Lee, Kathy E.

    2000-01-01

    In fish livers, all of the trace elements analyzed were detected except antimony, beryllium, cobalt, and uranium. Trace element concentrations in fish livers generally did not show any pronounced patterns. Ranges for concentrations of arsenic, cadmium, chromium, copper, lead, mercury, nickel, selenium, and zinc were similar to those measured in 20 other NAWQA studies across the United States. Cadmium concentrations in fish livers were moderately correlated to fish length and weight. There were no relations between trace element concentrations in fish livers and streambed sediment.

  12. Morphologic Patterns Formed by the Anomalous Fibers Occurring Along the Anterior Capsule of the Crystalline Lens in People With the Long Anterior Zonule Trait.

    PubMed

    Roberts, Daniel K; Yang, Yongyi; Morettin, Christina E; Newman, Tricia L; Roberts, Mary F; Wilensky, Jacob T

    2017-07-01

    People with the long anterior zonule (LAZ) trait, which may have prevalence near 2%, have zonular fibers that extend more central than usual along the anterior capsule of the crystalline lens. The anomalous fibers can be observed in vivo with clinical slit lamp biomicroscopy after pharmacologic pupil dilation, and although minimally studied, the LAZ trait may have importance to glaucoma, retinal degeneration, and cataract surgery. To further characterize LAZ morphology, a custom computer program was used to trace LAZ fibers seen on retro-illumination photos acquired during previous study at an academic, urban eye care facility in Chicago, IL. There were 59 African-Americans (54 female; median age = 70 years, 53-91 years) included in the analysis. After initial review of the zonule tracings, we identified three basic LAZ patterns. We called one pattern (47% of right eyes) a "non-segmental LAZ pattern," which was predominated by fibers that could be visually traced to the dilated pupil border where they became obscured by the iris. Another pattern (35% of right eyes), the "segmental LAZ pattern," was predominated by fibers that appeared to terminate abruptly without detectable extension to the pupil border. The third pattern (18% of right eyes), the "mixed LAZ pattern," had a more equivalent mixture of the other two fiber morphologies. Compared to the "non-segmental" group, the "segmental" LAZ eyes had smaller central zonule-free zones (P < 0.0001), and they tended to exhibit fewer LAZ fibers (P = 0.07). These data improve understanding of LAZ clinical anatomy and may be helpful to future investigation. Anat Rec, 300:1336-1347, 2017. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  13. [Reconstruction of sexual offences--forensic aspects of sperm traces].

    PubMed

    Laberke, Patrick J; Bockholdt, Britta; Hausmann, Roland; Balitzki, Beate

    2010-01-01

    The investigation of sexual offences is a real challenge, as the injuries are often unspecific or faint and may sometimes be missing completely. Evidence recovery and analysis as well as the statements of the victims and suspects are therefore of vital importance. In both presented cases, the results of trace evidence analysis were basically consistent with a sexual assault, but the victims' statements regarding the course of events and the pattern of traces showed severe discrepancies.

  14. Seasonal Cyclicity in Trace Elements and Stable Isotopes of Modern Horse Enamel.

    PubMed

    de Winter, Niels J; Snoeck, Christophe; Claeys, Philippe

    2016-01-01

    The study of stable isotopes in fossil bioapatite has yielded useful results and has shown that bioapatites are able to faithfully record paleo-environmental and paleo-climatic parameters from archeological to geological timescales. In an effort to establish new proxies for the study of bioapatites, intra-tooth records of enamel carbonate stable isotope ratios from a modern horse are compared with trace element profiles measured using laboratory micro X-Ray Fluorescence scanning. Using known patterns of tooth eruption and the relationship between stable oxygen isotopes and local temperature seasonality, an age model is constructed that links records from six cheek upper right teeth from the second premolar to the third molar. When plotted on this age model, the trace element ratios from horse tooth enamel show a seasonal pattern with a small shift in phase compared to stable oxygen isotope ratios. While stable oxygen and carbon isotopes in tooth enamel are forced respectively by the state of the hydrological cycle and the animal's diet, we argue that the seasonal signal in trace elements reflects seasonal changes in dust intake and diet of the animal. The latter explanation is in agreement with seasonal changes observed in carbon isotopes of the same teeth. This external forcing of trace element composition in mammal tooth enamel implies that trace element ratios may be used as proxies for seasonal changes in paleo-environment and paleo-diet.

  15. Seasonal Cyclicity in Trace Elements and Stable Isotopes of Modern Horse Enamel

    PubMed Central

    Snoeck, Christophe; Claeys, Philippe

    2016-01-01

    The study of stable isotopes in fossil bioapatite has yielded useful results and has shown that bioapatites are able to faithfully record paleo-environmental and paleo-climatic parameters from archeological to geological timescales. In an effort to establish new proxies for the study of bioapatites, intra-tooth records of enamel carbonate stable isotope ratios from a modern horse are compared with trace element profiles measured using laboratory micro X-Ray Fluorescence scanning. Using known patterns of tooth eruption and the relationship between stable oxygen isotopes and local temperature seasonality, an age model is constructed that links records from six cheek upper right teeth from the second premolar to the third molar. When plotted on this age model, the trace element ratios from horse tooth enamel show a seasonal pattern with a small shift in phase compared to stable oxygen isotope ratios. While stable oxygen and carbon isotopes in tooth enamel are forced respectively by the state of the hydrological cycle and the animal’s diet, we argue that the seasonal signal in trace elements reflects seasonal changes in dust intake and diet of the animal. The latter explanation is in agreement with seasonal changes observed in carbon isotopes of the same teeth. This external forcing of trace element composition in mammal tooth enamel implies that trace element ratios may be used as proxies for seasonal changes in paleo-environment and paleo-diet. PMID:27875538

  16. HUBBLE REVEALS STELLAR FIREWORKS ACCOMPANYING GALAXY COLLISION

    NASA Technical Reports Server (NTRS)

    2002-01-01

    This Hubble Space Telescope image provides a detailed look at a brilliant 'fireworks show' at the center of a collision between two galaxies. Hubble has uncovered over 1,000 bright, young star clusters bursting to life as a result of the head-on wreck. [Left] A ground-based telescopic view of the Antennae galaxies (known formally as NGC 4038/4039) - so named because a pair of long tails of luminous matter, formed by the gravitational tidal forces of their encounter, resembles an insect's antennae. The galaxies are located 63 million light-years away in the southern constellation Corvus. [Right] The respective cores of the twin galaxies are the orange blobs, left and right of image center, crisscrossed by filaments of dark dust. A wide band of chaotic dust, called the overlap region, stretches between the cores of the two galaxies. The sweeping spiral- like patterns, traced by bright blue star clusters, shows the result of a firestorm of star birth activity which was triggered by the collision. This natural-color image is a composite of four separately filtered images taken with the Wide Field Planetary Camera 2 (WFPC2), on January 20, 1996. Resolution is 15 light-years per pixel (picture element). Credit: Brad Whitmore (STScI), and NASA

  17. A new method for automatic discontinuity traces sampling on rock mass 3D model

    NASA Astrophysics Data System (ADS)

    Umili, G.; Ferrero, A.; Einstein, H. H.

    2013-02-01

    A new automatic method for discontinuity traces mapping and sampling on a rock mass digital model is described in this work. The implemented procedure allows one to automatically identify discontinuity traces on a Digital Surface Model: traces are detected directly as surface breaklines, by means of maximum and minimum principal curvature values of the vertices that constitute the model surface. Color influence and user errors, that usually characterize the trace mapping on images, are eliminated. Also trace sampling procedures based on circular windows and circular scanlines have been implemented: they are used to infer trace data and to calculate values of mean trace length, expected discontinuity diameter and intensity of rock discontinuities. The method is tested on a case study: results obtained applying the automatic procedure on the DSM of a rock face are compared to those obtained performing a manual sampling on the orthophotograph of the same rock face.

  18. Efficient generation of 3D hologram for American Sign Language using look-up table

    NASA Astrophysics Data System (ADS)

    Park, Joo-Sup; Kim, Seung-Cheol; Kim, Eun-Soo

    2010-02-01

    American Sign Language (ASL) is one of the languages giving the greatest help for communication of the hearing impaired person. Current 2-D broadcasting, 2-D movies are used the ASL to give some information, help understand the situation of the scene and translate the foreign language. These ASL will not be disappeared in future three-dimensional (3-D) broadcasting or 3-D movies because the usefulness of the ASL. On the other hands, some approaches for generation of CGH patterns have been suggested like the ray-tracing method and look-up table (LUT) method. However, these methods have some drawbacks that needs much time or needs huge memory size for look-up table. Recently, a novel LUT (N-LUT) method for fast generation of CGH patterns of 3-D objects with a dramatically reduced LUT without the loss of computational speed was proposed. Therefore, we proposed the method to efficiently generate the holographic ASL in holographic 3DTV or 3-D movies using look-up table method. The proposed method is largely consisted of five steps: construction of the LUT for each ASL images, extraction of characters in scripts or situation, call the fringe patterns for characters in the LUT for each ASL, composition of hologram pattern for 3-D video and hologram pattern for ASL and reconstruct the holographic 3D video with ASL. Some simulation results confirmed the feasibility of the proposed method in efficient generation of CGH patterns for ASL.

  19. The diagnostic performance of leak-plugging automated segmentation versus manual tracing of breast lesions on ultrasound images.

    PubMed

    Xiong, Hui; Sultan, Laith R; Cary, Theodore W; Schultz, Susan M; Bouzghar, Ghizlane; Sehgal, Chandra M

    2017-05-01

    To assess the diagnostic performance of a leak-plugging segmentation method that we have developed for delineating breast masses on ultrasound images. Fifty-two biopsy-proven breast lesion images were analyzed by three observers using the leak-plugging and manual segmentation methods. From each segmentation method, grayscale and morphological features were extracted and classified as malignant or benign by logistic regression analysis. The performance of leak-plugging and manual segmentations was compared by: size of the lesion, overlap area ( O a ) between the margins, and area under the ROC curves ( A z ). The lesion size from leak-plugging segmentation correlated closely with that from manual tracing ( R 2 of 0.91). O a was higher for leak plugging, 0.92 ± 0.01 and 0.86 ± 0.06 for benign and malignant masses, respectively, compared to 0.80 ± 0.04 and 0.73 ± 0.02 for manual tracings. Overall O a between leak-plugging and manual segmentations was 0.79 ± 0.14 for benign and 0.73 ± 0.14 for malignant lesions. A z for leak plugging was consistently higher (0.910 ± 0.003) compared to 0.888 ± 0.012 for manual tracings. The coefficient of variation of A z between three observers was 0.29% for leak plugging compared to 1.3% for manual tracings. The diagnostic performance, size measurements, and observer variability for automated leak-plugging segmentations were either comparable to or better than those of manual tracings.

  20. Rock fracture skeleton tracing by image processing and quantitative analysis by geometry features

    NASA Astrophysics Data System (ADS)

    Liang, Yanjie

    2016-06-01

    In rock engineering, fracture measurement is important for many applications. This paper proposes a novel method for rock fracture skeleton tracing and analyzing. As for skeleton localizing, the curvilinear fractures are multiscale enhanced based on a Hessian matrix, after image binarization, and clutters are post-processed by image analysis; subsequently, the fracture skeleton is extracted via ridge detection combined with a distance transform and thinning algorithm, after which gap sewing and burrs removal repair the skeleton. In regard to skeleton analyzing, the roughness and distribution of a fracture network are respectively described by the fractal dimensions D s and D b; the intersection and fragmentation of a fracture network are respectively characterized by the average number of ends and junctions per fracture N average and the average length per fracture L average. Three rock fracture surfaces are analyzed for experiments and the results verify that both the fracture tracing accuracy and the analysis feasibility are satisfactory using the new method.

  1. Fast ray-tracing of human eye optics on Graphics Processing Units.

    PubMed

    Wei, Qi; Patkar, Saket; Pai, Dinesh K

    2014-05-01

    We present a new technique for simulating retinal image formation by tracing a large number of rays from objects in three dimensions as they pass through the optic apparatus of the eye to objects. Simulating human optics is useful for understanding basic questions of vision science and for studying vision defects and their corrections. Because of the complexity of computing such simulations accurately, most previous efforts used simplified analytical models of the normal eye. This makes them less effective in modeling vision disorders associated with abnormal shapes of the ocular structures which are hard to be precisely represented by analytical surfaces. We have developed a computer simulator that can simulate ocular structures of arbitrary shapes, for instance represented by polygon meshes. Topographic and geometric measurements of the cornea, lens, and retina from keratometer or medical imaging data can be integrated for individualized examination. We utilize parallel processing using modern Graphics Processing Units (GPUs) to efficiently compute retinal images by tracing millions of rays. A stable retinal image can be generated within minutes. We simulated depth-of-field, accommodation, chromatic aberrations, as well as astigmatism and correction. We also show application of the technique in patient specific vision correction by incorporating geometric models of the orbit reconstructed from clinical medical images. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  2. Tracing and quantification of pharmaceuticals using MR imaging and spectroscopy at clinical MRI system

    NASA Astrophysics Data System (ADS)

    Jeong, Eun-Kee; Liu, Xin; Shi, Xianfeng; Yu, Y. Bruce; Lu, Zeng-Rong

    2012-10-01

    Magnetic resonance imaging (MRI) and spectroscopy (MRS) is very powerful modality for imaging and localized investigation of biological tissue. Medical MRI measures nuclear magnetization of the water protons, which consists of 70 % of our body. MRI provides superior contrast among different soft tissues to all other existing medical imaging modalities, including ultrasound, X-ray CT, PET, and SPECT. In principle, MRI/S may be an ideal non-invasive tool for drug delivery research. However, because of its low sensitivity, a large dose is required for tracing pharmaceuticals. Therefore, its use for imaging of pharmaceuticals is very limited mostly to molecules that contain a paramagnetic metal ion, such as gadolinium (Gd3+) and manganese (Mn2+). The paramagnetic metal ion provides a large fluctuating magnetic field at the proton in the water molecule via a coordinate site. The measurement of local drug concentration is the first step for further quantification. Local concentration of the paramagnetic-ion based MRI contrast agent can be indirectly measured via the change in the water signal intensity. 19F MRI/S of fluorinated complex may be an option for drug delivery and tracing agent, because the fluorinated molecule may be directly detected due to its large magnetic moment (94 % of proton) and 100 % abundance.

  3. Exploratory statistical and geographical freight traffic data analysis

    DOT National Transportation Integrated Search

    2000-08-01

    Data from freight traffic roadside surveys in Mexican highways are analyzed in order to find consistent patterns or systematic relationships between variables characterizing this traffic. Patterns traced are validated by contrasting against new data ...

  4. Three-dimensional simulation of the free shear layer using the vortex-in-cell method

    NASA Technical Reports Server (NTRS)

    Couet, B.; Buneman, O.; Leonard, A.

    1979-01-01

    We present numerical simulations of the evolution of a mixing layer from an initial state of uniform vorticity with simple two- and three-dimensional small perturbations. A new method for tracing a large number of three-dimensional vortex filaments is used in the simulations. Vortex tracing by Biot-Savart interaction originally implied ideal (non-viscous) flow, but we use a 3-d mesh, Fourier transforms and filtering for vortex tracing, which implies 'modeling' of subgrid scale motion and hence some viscosity. Streamwise perturbations lead to the usual roll-up of vortex patterns with spanwise uniformity maintained. Remarkably, spanwise perturbations generate streamwise distortions of the vortex filaments and the combination of both perturbations leads to patterns with interesting features discernable in the movies and in the records of enstrophy and energy for the three components of the flow.

  5. Distribution of Cr, Pb, Cd, Zn, Fe and Mn in Lake Victoria sediments, East Africa

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Onyari, J.M.; Wandiga, S.O.

    1989-06-01

    The presence of many metals at trace or ultra-trace levels in the human environment has received increased global attention. Sediments as a sink for pollutants are widely recognized pollution sources and diagenesis and biochemical transformations within the sediment may mobilize pollutants posing a threat to a wider biological community. The natural (background) concentrations of heavy metals in lake sediments can be estimated either by analysis of surface sediments in non-polluted regions or by analysis of core samples antedating modern pollution. The distribution pattern of heavy metals in tropical freshwater systems has been little studied. The authors found increased concentrations ofmore » lead and other trace metals in Lake Victoria. Thus this study was initiated in order to further investigate the distribution patterns of lead and other metals in Lake Victoria.« less

  6. Optical design of a robotic TV camera probe for minimally invasive abdominal surgery

    NASA Astrophysics Data System (ADS)

    Todaro, Susanna; He, Weiyi; Killinger, Dennis

    2011-03-01

    Minimally invasive techniques are a promising new field of surgery; however, they limit the surgeon's access points and maneuverability. In order to increase the number of access points in minimally invasive abdominal surgery, a proposed implantable medical probe braces to the abdominal wall and provides illumination and video signal. The probe is cylindrical, about 25 mm long and 10 mm in diameter. A ring of LEDs on the end of the probe illuminates the tissue, and the resulting image is focused onto an HD video detector. It was necessary to apply beam-shaping reflectors to collimate the light onto a small target area, to avoid illuminating areas not picked up by the video. These reflectors were designed and simulated using the optical ray tracing software TracePro. Two LED chip geometries and three types of reflector geometries were analyzed, and the parameters for each geometry were optimized. For the straight-edged reflectors, the intensity patterns and optimization were compared to experimental results. Although parabolic reflectors produced the best collimation, cone reflectors with a 20-degree half-angle produced significant collimation at a much cheaper price. This work was supported by NSF REU program (award No DMR-1004873).

  7. Automatic media-adventitia IVUS image segmentation based on sparse representation framework and dynamic directional active contour model.

    PubMed

    Zakeri, Fahimeh Sadat; Setarehdan, Seyed Kamaledin; Norouzi, Somayye

    2017-10-01

    Segmentation of the arterial wall boundaries from intravascular ultrasound images is an important image processing task in order to quantify arterial wall characteristics such as shape, area, thickness and eccentricity. Since manual segmentation of these boundaries is a laborious and time consuming procedure, many researchers attempted to develop (semi-) automatic segmentation techniques as a powerful tool for educational and clinical purposes in the past but as yet there is no any clinically approved method in the market. This paper presents a deterministic-statistical strategy for automatic media-adventitia border detection by a fourfold algorithm. First, a smoothed initial contour is extracted based on the classification in the sparse representation framework which is combined with the dynamic directional convolution vector field. Next, an active contour model is utilized for the propagation of the initial contour toward the interested borders. Finally, the extracted contour is refined in the leakage, side branch openings and calcification regions based on the image texture patterns. The performance of the proposed algorithm is evaluated by comparing the results to those manually traced borders by an expert on 312 different IVUS images obtained from four different patients. The statistical analysis of the results demonstrates the efficiency of the proposed method in the media-adventitia border detection with enough consistency in the leakage and calcification regions. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Light-field camera-based 3D volumetric particle image velocimetry with dense ray tracing reconstruction technique

    NASA Astrophysics Data System (ADS)

    Shi, Shengxian; Ding, Junfei; New, T. H.; Soria, Julio

    2017-07-01

    This paper presents a dense ray tracing reconstruction technique for a single light-field camera-based particle image velocimetry. The new approach pre-determines the location of a particle through inverse dense ray tracing and reconstructs the voxel value using multiplicative algebraic reconstruction technique (MART). Simulation studies were undertaken to identify the effects of iteration number, relaxation factor, particle density, voxel-pixel ratio and the effect of the velocity gradient on the performance of the proposed dense ray tracing-based MART method (DRT-MART). The results demonstrate that the DRT-MART method achieves higher reconstruction resolution at significantly better computational efficiency than the MART method (4-50 times faster). Both DRT-MART and MART approaches were applied to measure the velocity field of a low speed jet flow which revealed that for the same computational cost, the DRT-MART method accurately resolves the jet velocity field with improved precision, especially for the velocity component along the depth direction.

  9. Risk assessment of trace metals in an extreme environment sediment: shallow, hypersaline, alkaline, and industrial Lake Acıgöl, Denizli, Turkey.

    PubMed

    Budakoglu, Murat; Karaman, Muhittin; Kumral, Mustafa; Zeytuncu, Bihter; Doner, Zeynep; Yildirim, Demet Kiran; Taşdelen, Suat; Bülbül, Ali; Gumus, Lokman

    2018-02-23

    The major and trace element component of 48 recent sediment samples in three distinct intervals (0-10, 10-20, and 20-30 cm) from Lake Acıgöl is described to present the current contamination levels and grift structure of detrital and evaporate mineral patterns of these sediments in this extreme saline environment. The spatial and vertical concentrations of major oxides were not uniform in the each subsurface interval. However, similar spatial distribution patterns were observed for some major element couples, due mainly to the detrital and evaporate origin of these elements. A sequential extraction procedure including five distinct steps was also performed to determine the different bonds of trace elements in the < 60-μ particulate size of recent sediments. Eleven trace elements (Ni, Fe, Cd, Pb, Cu, Zn, As, Co, Cr, Al and Mn) in nine surface and subsurface sediment samples were analyzed with chemical partitioning procedures to determine the trace element percentage loads in these different sequential extraction phases. The obtained accuracy values via comparison of the bulk trace metal loads with the total loads of five extraction steps were satisfying for the Ni, Fe, Cd, Zn, and Co. While, bulk analysis results of the Cu, Ni, and V elements have good correlation with total organic matter, organic fraction of sequential extraction characterized by Cu, As, Cd, and Pb. Shallow Lake Acıgöl sediment is characteristic with two different redox layer a) oxic upper level sediments, where trace metals are mobilized, b) reduced subsurface level, where the trace metals are precipitated.

  10. Evaluation of double photon coincidence Compton imaging method with GEANT4 simulation

    NASA Astrophysics Data System (ADS)

    Yoshihara, Yuri; Shimazoe, Kenji; Mizumachi, Yuki; Takahashi, Hiroyuki

    2017-11-01

    Compton imaging has been used for various applications including astronomical observations, radioactive waste management, and biomedical imaging. The positions of radioisotopes are determined in the intersections of multiple cone traces through a large number of events, which reduces signal to noise ratio (SNR) of the images. We have developed an advanced Compton imaging method to localize radioisotopes with high SNR by using information of the interactions of Compton scattering caused by two gamma rays at the same time, as the double photon coincidence Compton imaging method. The targeted radioisotopes of this imaging method are specific nuclides that emit several gamma rays at the same time such as 60Co, 134Cs, and 111In, etc. Since their locations are determined in the intersections of two Compton cones, the most of cone traces would disappear in the three-dimensional space, which enhances the SNR and angular resolution. In this paper, the comparison of the double photon coincidence Compton imaging method and the single photon Compton imaging method was conducted by using GEANT4 Monte Carlo simulation.

  11. Noninvasive imaging of intracellular lipid metabolism in macrophages by Raman microscopy in combination with stable isotopic labeling.

    PubMed

    Matthäus, Christian; Krafft, Christoph; Dietzek, Benjamin; Brehm, Bernhard R; Lorkowski, Stefan; Popp, Jürgen

    2012-10-16

    Monocyte-derived macrophages play a key role in atherogenesis because their transformation into foam cells is responsible for deposition of lipids in plaques within arterial walls. The appearance of cytosolic lipid droplets is a hallmark of macrophage foam cell formation, and the molecular basics involved in this process are not well understood. Of particular interest is the intracellular fate of different individual lipid species, such as fatty acids or cholesterol. Here, we utilize Raman microscopy to image the metabolism of such lipids and to trace their subsequent storage patterns. The combination of microscopic information with Raman spectroscopy provides a powerful molecular imaging method, which allows visualization at the diffraction limit of the employed laser light and biochemical characterization through associated spectral information. In order to distinguish the molecules of interest from other naturally occurring lipids spectroscopically, deuterium labels were introduced. Intracellular distribution and metabolic changes were observed for serum albumin-complexed palmitic and oleic acid and cholesterol and quantitatively evaluated by monitoring the increase in CD scattering intensities at 0.5, 1, 3, 6, 24, 30, and 36 h. This approach may also allow for investigating the cellular trafficking of other molecules, such as nutrients, metabolites, and drugs.

  12. Digital micromirror devices in Raman trace detection of explosives

    NASA Astrophysics Data System (ADS)

    Glimtoft, Martin; Svanqvist, Mattias; Ågren, Matilda; Nordberg, Markus; Östmark, Henric

    2016-05-01

    Imaging Raman spectroscopy based on tunable filters is an established technique for detecting single explosives particles at stand-off distances. However, large light losses are inherent in the design due to sequential imaging at different wavelengths, leading to effective transmission often well below 1 %. The use of digital micromirror devices (DMD) and compressive sensing (CS) in imaging Raman explosives trace detection can improve light throughput and add significant flexibility compared to existing systems. DMDs are based on mature microelectronics technology, and are compact, scalable, and can be customized for specific tasks, including new functions not available with current technologies. This paper has been focusing on investigating how a DMD can be used when applying CS-based imaging Raman spectroscopy on stand-off explosives trace detection, and evaluating the performance in terms of light throughput, image reconstruction ability and potential detection limits. This type of setup also gives the possibility to combine imaging Raman with non-spatially resolved fluorescence suppression techniques, such as Kerr gating. The system used consists of a 2nd harmonics Nd:YAG laser for sample excitation, collection optics, DMD, CMOScamera and a spectrometer with ICCD camera for signal gating and detection. Initial results for compressive sensing imaging Raman shows a stable reconstruction procedure even at low signals and in presence of interfering background signal. It is also shown to give increased effective light transmission without sacrificing molecular specificity or area coverage compared to filter based imaging Raman. At the same time it adds flexibility so the setup can be customized for new functionality.

  13. Recovering the primary geochemistry of Jack Hills zircons through quantitative estimates of chemical alteration

    NASA Astrophysics Data System (ADS)

    Bell, Elizabeth A.; Boehnke, Patrick; Harrison, T. Mark

    2016-10-01

    Despite the robust nature of zircon in most crustal and surface environments, chemical alteration, especially associated with radiation damaged regions, can affect its geochemistry. This consideration is especially important when drawing inferences from the detrital record where the original rock context is missing. Typically, alteration is qualitatively diagnosed through inspection of zircon REE patterns and the style of zoning shown by cathodoluminescence imaging, since fluid-mediated alteration often causes a flat, high LREE pattern. Due to the much lower abundance of LREE in zircon relative both to other crustal materials and to the other REE, disturbance to the LREE pattern is the most likely first sign of disruption to zircon trace element contents. Using a database of 378 (148 new) trace element and 801 (201 new) oxygen isotope measurements on zircons from Jack Hills, Western Australia, we propose a quantitative framework for assessing chemical contamination and exchange with fluids in this population. The Light Rare Earth Element Index is scaled on the relative abundance of light to middle REE, or LREE-I = (Dy/Nd) + (Dy/Sm). LREE-I values vary systematically with other known contaminants (e.g., Fe, P) more faithfully than other suggested proxies for zircon alteration (Sm/La, various absolute concentrations of LREEs) and can be used to distinguish primary compositions when textural evidence for alteration is ambiguous. We find that zircon oxygen isotopes do not vary systematically with placement on or off cracks or with degree of LREE-related chemical alteration, suggesting an essentially primary signature. By omitting zircons affected by LREE-related alteration or contamination by mineral inclusions, we present the best estimate for the primary igneous geochemistry of the Jack Hills zircons. This approach increases the available dataset by allowing for discrimination of on-crack analyses (and analyses with ambiguous or no information on spot placement or zircon internal structures) that do not show evidence for chemical alteration. It distinguishes between altered and unaltered samples in ambiguous cases (e.g., relatively high Ti), identifying small groups with potentially differing provenance from the main Jack Hills population. Finally, filtering of the population using the LREE-I helps to more certainly define primary correlations among trace element variables, potentially relatable to magmatic compositional evolution.

  14. TraceContract: A Scala DSL for Trace Analysis

    NASA Technical Reports Server (NTRS)

    Barringer, Howard; Havelund, Klaus

    2011-01-01

    In this paper we describe TRACECONTRACT, an API for trace analysis, implemented in the SCALA programming language. We argue that for certain forms of trace analysis the best weapon is a high level programming language augmented with constructs for temporal reasoning. A trace is a sequence of events, which may for example be generated by a running program, instrumented appropriately to generate events. The API supports writing properties in a notation that combines an advanced form of data parameterized state machines with temporal logic. The implementation utilizes SCALA's support for defining internal Domain Specific Languages (DSLs). Furthermore SCALA's combination of object oriented and functional programming features, including partial functions and pattern matching, makes it an ideal host language for such an API.

  15. Areas of Polar Coronal Holes from 1996 Through 2010

    NASA Technical Reports Server (NTRS)

    Webber, Hess S. A.; Karna, N.; Pesnell, W. D.; Kirk, M. S.

    2014-01-01

    Polar coronal holes (PCHs) trace the magnetic variability of the Sun throughout the solar cycle. Their size and evolution have been studied as proxies for the global magnetic field. We present measurements of the PCH areas from 1996 through 2010, derived from an updated perimeter-tracing method and two synoptic-map methods. The perimeter tracing method detects PCH boundaries along the solar limb, using full-disk images from the SOlar and Heliospheric Observatory/Extreme ultraviolet Imaging Telescope (SOHO/EIT). One synoptic-map method uses the line-of-sight magnetic field from the SOHO/Michelson Doppler Imager (MDI) to determine the unipolarity boundaries near the poles. The other method applies thresholding techniques to synoptic maps created from EUV image data from EIT. The results from all three methods suggest that the solar maxima and minima of the two hemispheres are out of phase. The maximum PCH area, averaged over the methods in each hemisphere, is approximately 6 % during both solar minima spanned by the data (between Solar Cycles 22/23 and 23/24). The northern PCH area began a declining trend in 2010, suggesting a downturn toward the maximum of Solar Cycle 24 in that hemisphere, while the southern hole remained large throughout 2010.

  16. Spatial imaging in the soft x-ray region (20--304 A) utilizing the astigmatism of a grazing incidence concave grating

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Nudelfuden, A.; Solanki, R.; Moos, H.W.

    1985-03-15

    Soft x-ray (20--304--A) astigmatic line shapes were measured in order to evaluate the spatial imaging properties of a Rowland mounted concave grating in grazing incidence. The practicability of coarse 1-D spatial imaging in the soft x-ray region is demonstrated. Spatial resolution equivalent to approx.4 cm at a source distance of 2 m can be achieved with practical parameters (e.g., sensitivity and time resolution) for a fusion diagnostic spectrograph. The results are compared to computer-generated ray tracings and found to be in good agreement. The ray tracing program which models the grazing incidence optics is discussed.

  17. First 3D measurements of temperature fluctuations induced by gravity wave with the infrared limb imager GLORIA

    NASA Astrophysics Data System (ADS)

    Krisch, Isabell; Preusse, Peter; Ungermann, Jörn; Friedl-Vallon, Felix; Riese, Martin

    2017-04-01

    Gravity waves (GWs) are one of the most important coupling mechanisms in the atmosphere. They couple different compartments of the atmosphere. The GW-LCYCLE (Gravity Wave Life Cycle) project aims on studying the excitation, propagation, and dissipation of gravity waves. An aircraft campaign has been performed in winter 2015/2016, during which the first 3D tomographic measurements of GWs were performed with the infrared limb imager GLORIA (Gimballed Limb Observer for Radiance Imaging of the Atmosphere). GLORIA combines a classical Fourier Transform Spectrometer with a 2D detector array. The capability to image the atmosphere and thereby take several thousand spectra simultaneously improves the spatial sampling compared to conventional limb sounders by an order of magnitude. Furthermore GLORIA is able to pan the horizontal viewing direction and therefore measure the same volume of air under different angles. Due to these properties tomographic methods can be used to derive 3D temperature and tracer fields with spatial resolutions of better than 30km x 30km x 250m from measurements taken during circular flight patterns. Temperature distributions measured during a strong GW event on the 25.01.2016 during the GW-LCycle campaign over Iceland will be presented and analyzed for gravity waves. The three dimensional nature of the GLORIA measurements allows for the determination of the gravity wave momentum flux, including its horizontal direction. The calculated momentum fluxes rank this event under one of the strongest 1% observed in that latitude range in January 2016. The three dimensional wave vectors determined from the GLORIA measurements can be used for a ray tracing study with the Gravity wave Regional Or Global RAy Tracer (GROGRAT). Here 1D ray tracing, meaning solely vertical column propagation, as used by standard parameterizations in numerical weather prediction and climate models is compared to 4D ray tracing (spatially three dimensional with time varying background) for the presented event on the 25.01.2016. Here it is shown, that in the 1D case the GWs are filtered at lower altitudes, whereas in the 4D case the rays were able to propagate to altitudes of above 30km. Besides the forward propagation up to higher altitudes, also the backward propagation to the source region can be study with GROGRAT. Here the mountains of Iceland could be clearly identified as the source region of the measured GWs.

  18. Insights into the chemical partitioning of trace metals in roadside and off-road agricultural soils along two major highways in Attica's region, Greece.

    PubMed

    Botsou, Fotini; Sungur, Ali; Kelepertzis, Efstratios; Soylak, Mustafa

    2016-10-01

    We report in this study the magnetic properties and partitioning patterns of selected trace metals (Pb, Zn, Cu, Cd, Ni) in roadside and off-road (>200m distance from the road edge) agricultural soils collected along two major highways in Greece. Sequential extractions revealed that the examined trace metals for the entire data set were predominantly found in the residual fraction, averaging 37% for Cd up to 80% for Cu. Due to the strong influence of lithogenic factors, trace metal pseudototal contents of the roadside soils did not differ significantly to those of the off-road soils. Magnetic susceptibility and frequency dependent magnetic susceptibility determinations showed a magnetic enhancement of soils; however, it was primarily related to geogenic factors and not to traffic-derived magnetic particles. These results highlight that in areas characterized by strong geogenic backgrounds, neither pseudototal trace metal contents nor magnetic properties determinations effectively capture traffic-related contamination of topsoils. The vehicular emission signal was traced by the increased acid-soluble and reducible trace metal contents of the roadside soils compared to their off-road counterparts. In the case of Cu and Zn, changes in the partitioning patterns were also observed between the roadside and off-road soils. Environmental risks associated with agricultural lands extending at the margins of the studied highways may arise from the elevated Ni contents (both pseudototal and potentially mobile), and future studies should investigate Ni levels in the edible parts of plants grown on these agricultural soils. Copyright © 2016 Elsevier Inc. All rights reserved.

  19. Mapping Fifteen Trace Elements in Human Seminal Plasma and Sperm DNA.

    PubMed

    Ali, Sazan; Chaspoul, Florence; Anderson, Loundou; Bergé-Lefranc, David; Achard, Vincent; Perrin, Jeanne; Gallice, Philippe; Guichaoua, Marie

    2017-02-01

    Studies suggest a relationship between semen quality and the concentration of trace elements in serum or seminal plasma. However, trace elements may be linked to DNA and capable of altering the gene expression patterns. Thus, trace element interactions with DNA may contribute to the mechanisms for a trans-generational reproductive effect. We developed an analytical method to determine the amount of trace elements bound to the sperm DNA, and to estimate their affinity for the sperm DNA by the ratio: R = Log [metal concentration in the sperm DNA/metal concentration in seminal plasma]. We then analyzed the concentrations of 15 trace elements (Al, Cd, Cr, Cu, Hg, Mn, Mo, Ni, Pb, Ti, V, Zn, As, Sb, and Se) in the seminal plasma and the sperm DNA in 64 normal and 30 abnormal semen specimens with Inductively Coupled Plasma/Mass Spectrometry (ICP-MS). This study showed all trace elements were detected in the seminal plasma and only metals were detected in the sperm DNA. There was no correlation between the metals' concentrations in the seminal plasma and the sperm DNA. Al had the highest affinity for DNA followed by Pb and Cd. This strong affinity is consistent with the known mutagenic effects of these metals. The lowest affinity was observed for Zn and Ti. We observed a significant increase of Al linked to the sperm DNA of patients with oligozoospermia and teratozoospermia. Al's reproductive toxicity might be due to Al linked to DNA, by altering spermatogenesis and expression patterns of genes involved in the function of reproduction.

  20. An ion microprobe study of the intra-crystalline behavior of REE and selected trace elements in pyroxene from mare basalts with different cooling and crystallization histories

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Shearer, C.K.; Papike, J.J.; Simon, S.B.

    1989-05-01

    To study the effects of crystallization sequence and rate on trace element zoning characteristics of pyroxenes, the authors used combined electron microprobe-ion microprobe techniques on four nearly isochemical Apollo 12 and 15 pigeonite basalts with different cooling rates and crystallization histories. Major and minor element zoning characteristics are nearly identical to those reported in the literature. All the pyroxenes have similar chondrite-normalized REE patterns: negative Eu anomalies, positive slopes as defined by Yb/Ce, and slopes of REE patterns from Ce to Sm much steeper than from Gd to Yb. These trace element zoning characteristics in pyroxene and the partitioning ofmore » trace elements between pyroxene and the melt are intimately related to the interplay among the efficiency of the crystallization process, the kinetics at the crystal-melt interface, the kinetics of plagioclase nucleation and the characteristics of the crystal chemical substitutions within both the pyroxene and the associated crystallizing phases (i.e. plagioclase).« less

  1. Ray tracing on the MPP

    NASA Technical Reports Server (NTRS)

    Dorband, John E.

    1987-01-01

    Generating graphics to faithfully represent information can be a computationally intensive task. A way of using the Massively Parallel Processor to generate images by ray tracing is presented. This technique uses sort computation, a method of performing generalized routing interspersed with computation on a single-instruction-multiple-data (SIMD) computer.

  2. Enhancing forensic science with spectroscopic imaging

    NASA Astrophysics Data System (ADS)

    Ricci, Camilla; Kazarian, Sergei G.

    2006-09-01

    This presentation outlines the research we are developing in the area of Fourier Transform Infrared (FTIR) spectroscopic imaging with the focus on materials of forensic interest. FTIR spectroscopic imaging has recently emerged as a powerful tool for characterisation of heterogeneous materials. FTIR imaging relies on the ability of the military-developed infrared array detector to simultaneously measure spectra from thousands of different locations in a sample. Recently developed application of FTIR imaging using an ATR (Attenuated Total Reflection) mode has demonstrated the ability of this method to achieve spatial resolution beyond the diffraction limit of infrared light in air. Chemical visualisation with enhanced spatial resolution in micro-ATR mode broadens the range of materials studied with FTIR imaging with applications to pharmaceutical formulations or biological samples. Macro-ATR imaging has also been developed for chemical imaging analysis of large surface area samples and was applied to analyse the surface of human skin (e.g. finger), counterfeit tablets, textile materials (clothing), etc. This approach demonstrated the ability of this imaging method to detect trace materials attached to the surface of the skin. This may also prove as a valuable tool in detection of traces of explosives left or trapped on the surfaces of different materials. This FTIR imaging method is substantially superior to many of the other imaging methods due to inherent chemical specificity of infrared spectroscopy and fast acquisition times of this technique. Our preliminary data demonstrated that this methodology will provide the means to non-destructive detection method that could relate evidence to its source. This will be important in a wider crime prevention programme. In summary, intrinsic chemical specificity and enhanced visualising capability of FTIR spectroscopic imaging open a window of opportunities for counter-terrorism and crime-fighting, with applications ranging from analysis of trace evidence (e.g. in soil), tablets, drugs, fibres, tape explosives, biological samples to detection of gunshot residues and imaging of fingerprints.

  3. Proposed imaging of the ultrafast electronic motion in samples using x-ray phase contrast.

    PubMed

    Dixit, Gopal; Slowik, Jan Malte; Santra, Robin

    2013-03-29

    Tracing the motion of electrons has enormous relevance to understanding ubiquitous phenomena in ultrafast science, such as the dynamical evolution of the electron density during complex chemical and biological processes. Scattering of ultrashort x-ray pulses from an electronic wave packet would appear to be the most obvious approach to image the electronic motion in real time and real space with the notion that such scattering patterns, in the far-field regime, encode the instantaneous electron density of the wave packet. However, recent results by Dixit et al. [Proc. Natl. Acad. Sci. U.S.A. 109, 11636 (2012)] have put this notion into question and have shown that the scattering in the far-field regime probes spatiotemporal density-density correlations. Here, we propose a possible way to image the instantaneous electron density of the wave packet via ultrafast x-ray phase contrast imaging. Moreover, we show that inelastic scattering processes, which plague ultrafast scattering in the far-field regime, do not contribute in ultrafast x-ray phase contrast imaging as a consequence of an interference effect. We illustrate our general findings by means of a wave packet that lies in the time and energy range of the dynamics of valence electrons in complex molecular and biological systems. This present work offers a potential to image not only instantaneous snapshots of nonstationary electron dynamics, but also the laplacian of these snapshots which provide information about the complex bonding and topology of the charge distributions in the systems.

  4. Proposed Imaging of the Ultrafast Electronic Motion in Samples using X-Ray Phase Contrast

    NASA Astrophysics Data System (ADS)

    Dixit, Gopal; Slowik, Jan Malte; Santra, Robin

    2013-03-01

    Tracing the motion of electrons has enormous relevance to understanding ubiquitous phenomena in ultrafast science, such as the dynamical evolution of the electron density during complex chemical and biological processes. Scattering of ultrashort x-ray pulses from an electronic wave packet would appear to be the most obvious approach to image the electronic motion in real time and real space with the notion that such scattering patterns, in the far-field regime, encode the instantaneous electron density of the wave packet. However, recent results by Dixit et al. [Proc. Natl. Acad. Sci. U.S.A. 109, 11 636 (2012)] have put this notion into question and have shown that the scattering in the far-field regime probes spatiotemporal density-density correlations. Here, we propose a possible way to image the instantaneous electron density of the wave packet via ultrafast x-ray phase contrast imaging. Moreover, we show that inelastic scattering processes, which plague ultrafast scattering in the far-field regime, do not contribute in ultrafast x-ray phase contrast imaging as a consequence of an interference effect. We illustrate our general findings by means of a wave packet that lies in the time and energy range of the dynamics of valence electrons in complex molecular and biological systems. This present work offers a potential to image not only instantaneous snapshots of nonstationary electron dynamics, but also the Laplacian of these snapshots which provide information about the complex bonding and topology of the charge distributions in the systems.

  5. Reduced trace element concentrations in fast-growing juvenile Atlantic salmon in natural streams.

    PubMed

    Ward, Darren M; Nislow, Keith H; Chen, Celia Y; Folt, Carol L

    2010-05-01

    To assess the effect of rapid individual growth on trace element concentrations in fish, we measured concentrations of seven trace elements (As, Cd, Cs, Hg, Pb, Se, Zn) in stream-dwelling Atlantic salmon (Salmo salar) from 15 sites encompassing a 10-fold range in salmon growth. All salmon were hatched under uniform conditions, released into streams, and sampled approximately 120 days later for trace element analysis. For most elements, element concentrations in salmon tracked those in their prey. Fast-growing salmon had lower concentrations of all elements than slow growers, after accounting for prey concentrations. This pattern held for essential and nonessential elements, as well as elements that accumulate from food and those that can accumulate from water. At the sites with the fastest salmon growth, trace element concentrations in salmon were 37% (Cs) to 86% (Pb) lower than at sites where growth was suppressed. Given that concentrations were generally below levels harmful to salmon and that the pattern was consistent across all elements, we suggest that dilution of elements in larger biomass led to lower concentrations in fast-growing fish. Streams that foster rapid, efficient fish growth may produce fish with lower concentrations of elements potentially toxic for human and wildlife consumers.

  6. The abundance and relative volatility of refractory trace elements in Allende Ca,Al-rich inclusions - Implications for chemical and physical processes in the solar nebula

    NASA Technical Reports Server (NTRS)

    Kornacki, Alan S.; Fegley, Bruce, Jr.

    1986-01-01

    The relative volatilities of lithophile refractory trace elements (LRTE) were determined using calculated 50-percent condensation temperatures. Then, the refractory trace-element abundances were measured in about 100 Allende inclusions. The abundance patterns found in Allende Ca,Al-rich inclusions (CAIs) and ultrarefractory inclusions were used to empirically modify the calculated LRTE volatility sequence. In addition, the importance of crystal-chemical effects, diffusion constraints, and grain transport for the origin of the trace-element chemistry of Allende CAIs (which have important implications for chemical and physical processes in the solar nebula) is discussed.

  7. Ordering Traces Logically to Identify Lateness in Message Passing Programs

    DOE PAGES

    Isaacs, Katherine E.; Gamblin, Todd; Bhatele, Abhinav; ...

    2015-03-30

    Event traces are valuable for understanding the behavior of parallel programs. However, automatically analyzing a large parallel trace is difficult, especially without a specific objective. We aid this endeavor by extracting a trace's logical structure, an ordering of trace events derived from happened-before relationships, while taking into account developer intent. Using this structure, we can calculate an operation's delay relative to its peers on other processes. The logical structure also serves as a platform for comparing and clustering processes as well as highlighting communication patterns in a trace visualization. We present an algorithm for determining this idealized logical structure frommore » traces of message passing programs, and we develop metrics to quantify delays and differences among processes. We implement our techniques in Ravel, a parallel trace visualization tool that displays both logical and physical timelines. Rather than showing the duration of each operation, we display where delays begin and end, and how they propagate. As a result, we apply our approach to the traces of several message passing applications, demonstrating the accuracy of our extracted structure and its utility in analyzing these codes.« less

  8. Antisolar differential rotation with surface lithium enrichment on the single K-giant V1192 Orionis

    NASA Astrophysics Data System (ADS)

    Kővári, Zs.; Strassmeier, K. G.; Carroll, T. A.; Oláh, K.; Kriskovics, L.; Kővári, E.; Kovács, O.; Vida, K.; Granzer, T.; Weber, M.

    2017-10-01

    Context. Stars with about 1-2 solar masses at the red giant branch (RGB) represent an intriguing period of stellar evolution, I.e. when the convective envelope interacts with the fast-rotating core. During these mixing episodes freshly synthesized lithium can come up to the stellar surface along with high angular momentum material. This high angular momentum may alter the surface rotation pattern. Aims: The single rapidly rotating K-giant V1192 Ori is revisited to determine its surface differential rotation, lithium abundance, and basic stellar properties such as a precise rotation period. The aim is to independently verify the antisolar differential rotation of the star and possibly find a connection to the surface lithium abundance. Methods: We applied time-series Doppler imaging to a new multi-epoch data set. Altogether we reconstructed 11 Doppler images from spectroscopic data collected with the STELLA robotic telescope between 2007-2016. We used our inversion code iMap to reconstruct all stellar surface maps. We extracted the differential rotation from these images by tracing systematic spot migration as a function of stellar latitude from consecutive image cross-correlations. Results: The position of V1192 Ori in the Hertzsprung-Russell diagram suggests that the star is in the helium core-burning phase just leaving the RGB bump. We measure A(Li)NLTE = 1.27, I.e. a value close to the anticipated transition value of 1.5 from Li-normal to Li-rich giants. Doppler images reveal extended dark areas arranged quasi-evenly along an equatorial belt. No cool polar spot is found during the investigated epoch. Spot displacements clearly suggest antisolar surface differential rotation with α = - 0.11 ± 0.02 shear coefficient. Conclusions: The surface Li enrichment and the peculiar surface rotation pattern may indicate a common origin. Based on data obtained with the STELLA robotic observatory in Tenerife, an AIP facility jointly operated by AIP and IAC.

  9. The Colour and Stereo Surface Imaging System (CaSSIS) for the ExoMars Trace Gas Orbiter

    USGS Publications Warehouse

    Thomas, N.; Cremonese, G.; Ziethe, R.; Gerber, M.; Brändli, M.; Bruno, G.; Erismann, M.; Gambicorti, L.; Gerber, T.; Ghose, K.; Gruber, M.; Gubler, P.; Mischler, H.; Jost, J.; Piazza, D.; Pommerol, A.; Rieder, M.; Roloff, V.; Servonet, A.; Trottmann, W.; Uthaicharoenpong, T.; Zimmermann, C.; Vernani, D.; Johnson, M.; Pelò, E.; Weigel, T.; Viertl, J.; De Roux, N.; Lochmatter, P.; Sutter, G.; Casciello, A.; Hausner, T.; Ficai Veltroni, I.; Da Deppo, V.; Orleanski, P.; Nowosielski, W.; Zawistowski, T.; Szalai, S.; Sodor, B.; Tulyakov, S.; Troznai, G.; Banaskiewicz, M.; Bridges, J.C.; Byrne, S.; Debei, S.; El-Maarry, M. R.; Hauber, E.; Hansen, C.J.; Ivanov, A.; Keszthelyil, L.; Kirk, Randolph L.; Kuzmin, R.; Mangold, N.; Marinangeli, L.; Markiewicz, W. J.; Massironi, M.; McEwen, A.S.; Okubo, Chris H.; Tornabene, L.L.; Wajer, P.; Wray, J.J.

    2017-01-01

    The Colour and Stereo Surface Imaging System (CaSSIS) is the main imaging system onboard the European Space Agency’s ExoMars Trace Gas Orbiter (TGO) which was launched on 14 March 2016. CaSSIS is intended to acquire moderately high resolution (4.6 m/pixel) targeted images of Mars at a rate of 10–20 images per day from a roughly circular orbit 400 km above the surface. Each image can be acquired in up to four colours and stereo capability is foreseen by the use of a novel rotation mechanism. A typical product from one image acquisition will be a 9.5 km×∼45 km">9.5 km×∼45 km9.5 km×∼45 km swath in full colour and stereo in one over-flight of the target thereby reducing atmospheric influences inherent in stereo and colour products from previous high resolution imagers. This paper describes the instrument including several novel technical solutions required to achieve the scientific requirements.

  10. Groundwater remediation engineering sparging using acetylene--study on the flow distribution of air.

    PubMed

    Zheng, Yan-Mei; Zhang, Ying; Huang, Guo-Qiang; Jiang, Bin; Li, Xin-Gang

    2005-01-01

    Air sparging (AS) is an emerging method to remove VOCs from saturated soils and groundwater. Air sparging performance highly depends on the air distribution resulting in the aquifer. In order to study gas flow characterization, a two-dimensional experimental chamber was designed and installed. In addition, the method by using acetylene as the tracer to directly image the gas distribution results of AS process has been put forward. Experiments were performed with different injected gas flow rates. The gas flow patterns were found to depend significantly on the injected gas flow rate, and the characterization of gas flow distributions in porous media was very different from the acetylene tracing study. Lower and higher gas flow rates generally yield more irregular in shape and less effective gas distributions.

  11. Long Term Association of Tropospheric Trace gases over Pakistan by exploiting satellite observations and development of Econometric Regression based Model

    NASA Astrophysics Data System (ADS)

    Zeb, Naila; Fahim Khokhar, Muhammad; Khan, Saud Ahmed; Noreen, Asma; Murtaza, Rabbia

    2017-04-01

    Air pollution is the expected key environmental issue of Pakistan as it is ranked among top polluted countries in the region. Ongoing rapid economic growth without any adequate measures is leading to worst air quality over time. The study aims to monitor long term atmospheric composition and association of trace gases over Pakistan. Tropospheric concentrations of CO, TOC, NO2 and HCHO derived from multiple satellite instruments are used for study from year 2005 to 2014. The study will provide first database for tropospheric trace gases over Pakistan. Spatio-temporal assessment identified hotspots and possible sources of trace gases over the Pakistan. High concentrations of trace gases are mainly observed over Punjab region, which may be attributed to its metropolitan importance. It is the major agricultural, industrialized and urbanized (nearly 60 % of the Pakistan's population) sector of the country. The expected sources are the agricultural fires, biomass/fossil fuel burning for heating purposes, urbanization, industrialization and meteorological variations. Seasonal variability is observed to explore seasonal patterns over the decade. Well defined seasonal cycles of trace gases are observed over the whole study period. The observed seasonal patterns also showed some noteworthy association among trace gases, which is further explored by different statistical tests. Seasonal Mann Kendall test is applied to test the significance of trend in series whereas correlation is carried out to measure the strength of association among trace gases. Strong correlation is observed for trace gases especially between CO and TOC. Partial Mann Kendall test is used to ideally identify the impact of each covariate on long term trend of CO and TOC by partialling out each correlating trace gas (covariate). It is observed that TOC, NO2 and HCHO has significant impact on long term trend of CO whereas, TOC critically depends on NO2 concentrations for long term increase over the region. Furthermore to explore causal relation, regression analysis is employed to estimate model for CO and TOC. This model numerically estimated the long term association of trace gases over the region.

  12. Multiple Hadean crystallization and reworking events preserved in individual Jack Hills zircon grains

    NASA Astrophysics Data System (ADS)

    Bellucci, Jeremy; Nemchin, Alexander; Whitehouse, Martin; Snape, Joshua

    2017-04-01

    Five Hadean (>3.9 Ga) aged zircon grains from the Jack Hills metasedimentary belt have been investigated by an improved secondary ion mass spectrometry scanning ion image technique. This technique has the ability to obtain accurate and precise full U-Pb systematics on a scale <5 μm, as well as document the spatial distribution of U, Th and Pb. All five of the grains investigated here have complex cathodoluminescence patterns that correlate to different U, Th, and Pb concentration domains. The age determinations for these different chemical zones indicate multiple reworking events that are preserved in each grain and have affected the primary crystalized zircon on the scale of <10 μm, smaller than traditional ion microprobe spot analyses. These new scanning ion images and age determinations suggest that roughly half, if not all, previous analyses, including those of trace elements and various isotope systems, could have intersected several domains of unfractured zircon, thus making the interpretation of any trace element, Hf, or O isotopic data tenuous. Lastly, all of the grains analyzed here preserve at least two distinguishable 207Pb/206Pb ages. These ages are preserved in core-rim and/or complex internal textural relationships. These secondary events took place during at ca. 4.3, 4.2, 4.1, 4.0, and 3.7 Ga potentially indicating a sequence of magmatic and/or metamorphic events that recycled some volume of early crust during the Hadean and into Paleo- to Mesoarchean several times with an apparent periodicity of ca. 100 Ma.

  13. Generating realistic images using Kray

    NASA Astrophysics Data System (ADS)

    Tanski, Grzegorz

    2004-07-01

    Kray is an application for creating realistic images. It is written in C++ programming language, has a text-based interface, solves global illumination problem using techniques such as radiosity, path tracing and photon mapping.

  14. JURASSIC Retrieval Processing

    NASA Astrophysics Data System (ADS)

    Blank, J.; Ungermann, J.; Guggenmoser, T.; Kaufmann, M.; Riese, M.

    2012-04-01

    The Gimballed Limb Observer for Radiance Imaging in the Atmosphere (GLORIA) is an aircraft based infrared limb-sounder. This presentation will give an overview of the retrieval techniques used for the analysis of data produced by the GLORIA instrument. For data processing, the JUelich RApid Spectral SImulation Code 2 (JURASSIC2) was developed. It consists of a set of programs to retrieve atmospheric profiles from GLORIA measurements. The GLORIA Michelson interferometer can run with a wide range of parameters. In the dynamics mode, spectra are generate with a medium spectral and a very high temporal and spatial resolution. Each sample can contain thousands of spectral lines for each contributing trace gas. In the JURASSIC retrieval code this is handled by using a radiative transport model based on the Emissivity Growth Approximation. Deciding which samples should be included in the retrieval is a non-trivial task and requires specific domain knowledge. To ease this problem we developed an automatic selection program by analysing the Shannon information content. By taking into account data for all relevant trace gases and instrument effects, optimal integrated spectral windows are computed. This includes considerations for cross-influence of trace gases, which has non-obvious consequence for the contribution of spectral samples. We developed methods to assess the influence of spectral windows on the retrieval. While we can not exhaustively search the whole range of possible spectral sample combinations, it is possible to optimize information content using a genetic algorithm. The GLORIA instrument is mounted with a viewing direction perpendicular to the flight direction. A gimbal frame makes it possible to move the instrument 45° to both direction. By flying on a circular path, it is possible to generate images of an area of interest from a wide range of angles. These can be analyzed in a 3D-tomographic fashion, which yields superior spatial resolution along line of site. Usually limb instruments have a resolution of several hundred kilometers. In studies we have shown to get a resolution of 35km in all horizontal directions. Even when only linear flight patterns can be realized, resolutions of ≈70km can be obtained. This technique can be used to observe features of the Upper Troposphere Lower Stratosphere (UTLS), where important mixing processes take place. Especially tropopause folds are difficult to image, as their main features need to be along line of flight when using common 1D approach.

  15. Whole organism lineage tracing by combinatorial and cumulative genome editing

    PubMed Central

    McKenna, Aaron; Findlay, Gregory M.; Gagnon, James A.; Horwitz, Marshall S.; Schier, Alexander F.; Shendure, Jay

    2016-01-01

    Multicellular systems develop from single cells through distinct lineages. However, current lineage tracing approaches scale poorly to whole, complex organisms. Here we use genome editing to progressively introduce and accumulate diverse mutations in a DNA barcode over multiple rounds of cell division. The barcode, an array of CRISPR/Cas9 target sites, marks cells and enables the elucidation of lineage relationships via the patterns of mutations shared between cells. In cell culture and zebrafish, we show that rates and patterns of editing are tunable, and that thousands of lineage-informative barcode alleles can be generated. By sampling hundreds of thousands of cells from individual zebrafish, we find that most cells in adult organs derive from relatively few embryonic progenitors. In future analyses, genome editing of synthetic target arrays for lineage tracing (GESTALT) can be used to generate large-scale maps of cell lineage in multicellular systems for normal development and disease. PMID:27229144

  16. Studying Nearshore Ocean Waves Using X-Band Radar

    NASA Astrophysics Data System (ADS)

    Laughlin, B.; Bland, R. W.

    2014-12-01

    In January of 2010, ocean waves generated by an unusually large storm caused major erosion damage to the San Francisco coastline, with an erosion "hot spot" partially collapsing a four-lane throughway and threatening important infrastructure. Every winter, swells from the northwest approach San Francisco's Ocean Beach by passing over the southern limb of the San Francisco Bar, an ebb-tidal delta seaward of the Golden Gate Bridge. Refraction of approaching wave-fronts causes focusing of wave energy at the southern end of Ocean Beach where the S.F. Bar meets the coast, possibly explaining the location of the 2010 hot spot. In 2011 an x-band radar system was installed on a site near the erosion hot spot, at an elevation of 13 m above low tide, about 40 m back from the high-tide line. The radar system collects images of wave crests out to 3 km from the scanner. Study of these images when offshore buoys report a single NW swell shows two swell patterns arriving at Ocean Beach, separated in direction by about 30 degrees, and producing a quilted interference pattern, as seen in the accompanying figure. We interpret these swells as following two different paths around the Bar. Preliminary ray-tracing studies tend to confirm this interpretation. To enhance these images we have employed two techniques. The first technique, which is concerned with identification and visualization of swells in the region of interest, involves iteration over possible swell periods: scans taken at integral multiples of a given period are added together, with the sharpest image determining the swell period (see figure) and providing an enhanced image for further analysis. The second technique involves displacement of images in time by phase incrementation in k-space, with subsequent addition of images. We will present results concerning the stability of the relative phase of the two swells, and the applicability to models for propagation of waves. Establishment of a tested propagation model would permit prediction of erosion hazards for hypothetical enhanced storms and rising sea level due to global climate change.

  17. Mapping and Deciphering Neural Codes of NMDA Receptor-Dependent Fear Memory Engrams in the Hippocampus

    PubMed Central

    Tsien, Joe Z.

    2013-01-01

    Mapping and decoding brain activity patterns underlying learning and memory represents both great interest and immense challenge. At present, very little is known regarding many of the very basic questions regarding the neural codes of memory: are fear memories retrieved during the freezing state or non-freezing state of the animals? How do individual memory traces give arise to a holistic, real-time associative memory engram? How are memory codes regulated by synaptic plasticity? Here, by applying high-density electrode arrays and dimensionality-reduction decoding algorithms, we investigate hippocampal CA1 activity patterns of trace fear conditioning memory code in inducible NMDA receptor knockout mice and their control littermates. Our analyses showed that the conditioned tone (CS) and unconditioned foot-shock (US) can evoke hippocampal ensemble responses in control and mutant mice. Yet, temporal formats and contents of CA1 fear memory engrams differ significantly between the genotypes. The mutant mice with disabled NMDA receptor plasticity failed to generate CS-to-US or US-to-CS associative memory traces. Moreover, the mutant CA1 region lacked memory traces for “what at when” information that predicts the timing relationship between the conditioned tone and the foot shock. The degraded associative fear memory engram is further manifested in its lack of intertwined and alternating temporal association between CS and US memory traces that are characteristic to the holistic memory recall in the wild-type animals. Therefore, our study has decoded real-time memory contents, timing relationship between CS and US, and temporal organizing patterns of fear memory engrams and demonstrated how hippocampal memory codes are regulated by NMDA receptor synaptic plasticity. PMID:24302990

  18. Modeling of Pixelated Detector in SPECT Pinhole Reconstruction.

    PubMed

    Feng, Bing; Zeng, Gengsheng L

    2014-04-10

    A challenge for the pixelated detector is that the detector response of a gamma-ray photon varies with the incident angle and the incident location within a crystal. The normalization map obtained by measuring the flood of a point-source at a large distance can lead to artifacts in reconstructed images. In this work, we investigated a method of generating normalization maps by ray-tracing through the pixelated detector based on the imaging geometry and the photo-peak energy for the specific isotope. The normalization is defined for each pinhole as the normalized detector response for a point-source placed at the focal point of the pinhole. Ray-tracing is used to generate the ideal flood image for a point-source. Each crystal pitch area on the back of the detector is divided into 60 × 60 sub-pixels. Lines are obtained by connecting between a point-source and the centers of sub-pixels inside each crystal pitch area. For each line ray-tracing starts from the entrance point at the detector face and ends at the center of a sub-pixel on the back of the detector. Only the attenuation by NaI(Tl) crystals along each ray is assumed to contribute directly to the flood image. The attenuation by the silica (SiO 2 ) reflector is also included in the ray-tracing. To calculate the normalization for a pinhole, we need to calculate the ideal flood for a point-source at 360 mm distance (where the point-source was placed for the regular flood measurement) and the ideal flood image for the point-source at the pinhole focal point, together with the flood measurement at 360 mm distance. The normalizations are incorporated in the iterative OSEM reconstruction as a component of the projection matrix. Applications to single-pinhole and multi-pinhole imaging showed that this method greatly reduced the reconstruction artifacts.

  19. Chemometric evaluation of concentrations of trace elements in intervertebral disc tissue in patient with degenerative disc disease.

    PubMed

    Kubaszewski, Łukasz; Zioła-Frankowska, Anetta; Gasik, Zuzanna; Frankowski, Marcin; Dąbrowski, Mikołaj; Molisak, Bartłomiej; Kaczmarczyk, Jacek; Gasik, Robert

    2017-12-23

    The work is designed to uncover the pattern of mutual relation among trace elements and epidemiological data in the degenerated intervertebral disk tissue in humans. Hitherto the reason of the degenerative process is not fully understood. Trace elements are the basic components of the biological compound related both its metabolism as well as environmental exposure. The relation pattern among elements occurs gives new perspective in solving the cause of the disease. We have analysed trace elements content in the 30 intervertebral disc from 22 patients with degenerative disc disease. The concentrations of Al, Cu, Cd, Mo, Ni and Pb were determined with Atomic Absorption Spectrometry. To analyse the multidimentional relation between trace element concentration and epidemiological data the chemometric analysis was applied. The similarity have been shown in occurrence of following pairs: Cd-Mo as well as Mg-Zn. The second pair was correlated with Pb concentration. Pb levels are observed to be competitive to Cu concentration. Cd concentration was related to Zn and Mg deficiency. No single but rather cluster of epidemiological data show observable influence on the TE tissue variance. Zn and Cu was related to the male sex. Operation with orthopedic implants were related to combined Al, Mo and Zn concentration. This is the first chemometric analysis of trace elements in disk tissue. It shows multidimentional relations that are missed by the classical statistic. The analysis shows significant relation. The nature of the relations is the basis for further metabolic and environmental research.

  20. Hyperspectral image analysis for standoff trace detection using IR laser spectroscopy

    NASA Astrophysics Data System (ADS)

    Jarvis, J.; Fuchs, F.; Hugger, S.; Ostendorf, R.; Butschek, L.; Yang, Q.; Dreyhaupt, A.; Grahmann, J.; Wagner, J.

    2016-05-01

    In the recent past infrared laser backscattering spectroscopy using Quantum Cascade Lasers (QCL) emitting in the molecular fingerprint region between 7.5 μm and 10 μm proved a highly promising approach for stand-off detection of dangerous substances. In this work we present an active illumination hyperspectral image sensor, utilizing QCLs as spectral selective illumination sources. A high performance Mercury Cadmium Telluride (MCT) imager is used for collection of the diffusely backscattered light. Well known target detection algorithms like the Adaptive Matched Subspace Detector and the Adaptive Coherent Estimator are used to detect pixel vectors in the recorded hyperspectral image that contain traces of explosive substances like PETN, RDX or TNT. In addition we present an extension of the backscattering spectroscopy technique towards real-time detection using a MOEMS EC-QCL.

  1. Jupiter With Great Red Spot, Near Infrared, May 2017

    NASA Image and Video Library

    2017-06-30

    This composite, false-color infrared image of Jupiter reveals haze particles over a range of altitudes, as seen in reflected sunlight. It was taken using the Gemini North Telescope's Near-InfraRed Imager (NIRI) on May 18, 2017, in collaboration with the investigation of Jupiter by NASA's Juno mission. Juno completed its sixth close approach to Jupiter a few hours after this observation. The multiple filters corresponding to each color used in the image cover wavelengths between 1.69 microns and 2.275 microns. Jupiter's Great Red Spot (GRS) appears as the brightest (white) region at these wavelengths, which are primarily sensitive to high-altitude clouds and hazes near and above the top of Jupiter's convective region. The GRS is one of the highest-altitude features in Jupiter's atmosphere. Narrow spiral streaks that appear to lead into it or out of it from surrounding regions probably represent atmospheric features being stretched by the intense winds within the GRS, such as the hook-like structure on its western edge (left side). Some are being swept off its eastern edge (right side) and into an extensive wave-like flow pattern, and there is even a trace of flow from its northern edge. Other features near the GRS include the dark block and dark oval to the south and the north of the eastern flow pattern, respectively, indicating a lower density of cloud and haze particles in those locations. Both are long-lived cyclonic circulations, rotating clockwise -- in the opposite direction as the counterclockwise rotation of the GRS. A prominent wave pattern is evident north of the equator, along with two bright ovals, which are anticyclones that appeared in January 2017. Both the wave pattern and the ovals may be associated with an impressive upsurge in stormy activity that has been observed in these latitudes this year. Another bright anticyclonic oval is seen further north. The Juno spacecraft may pass over these ovals, as well as the Great Red Spot, during its close approach to Jupiter on July 10, 2017, Pacific Time (July 11, Universal Time). High hazes are evident over both polar regions with much spatial structure not previously been seen quite so clearly in ground-based images The filters used for observations combined into this image admit infrared light centered on the following infrared wavelengths (and presented here in these colors): 1.69 microns (blue), 2.045 microns (cyan), 2.169 microns (green), 2.124 microns https://photojournal.jpl.nasa.gov/catalog/PIA21713

  2. Automatic Classification of Station Quality by Image Based Pattern Recognition of Ppsd Plots

    NASA Astrophysics Data System (ADS)

    Weber, B.; Herrnkind, S.

    2017-12-01

    The number of seismic stations is growing and it became common practice to share station waveform data in real-time with the main data centers as IRIS, GEOFON, ORFEUS and RESIF. This made analyzing station performance of increasing importance for automatic real-time processing and station selection. The value of a station depends on different factors as quality and quantity of the data, location of the site and general station density in the surrounding area and finally the type of application it can be used for. The approach described by McNamara and Boaz (2006) became standard in the last decade. It incorporates a probability density function (PDF) to display the distribution of seismic power spectral density (PSD). The low noise model (LNM) and high noise model (HNM) introduced by Peterson (1993) are also displayed in the PPSD plots introduced by McNamara and Boaz allowing an estimation of the station quality. Here we describe how we established an automatic station quality classification module using image based pattern recognition on PPSD plots. The plots were split into 4 bands: short-period characteristics (0.1-0.8 s), body wave characteristics (0.8-5 s), microseismic characteristics (5-12 s) and long-period characteristics (12-100 s). The module sqeval connects to a SeedLink server, checks available stations, requests PPSD plots through the Mustang service from IRIS or PQLX/SQLX or from GIS (gempa Image Server), a module to generate different kind of images as trace plots, map plots, helicorder plots or PPSD plots. It compares the image based quality patterns for the different period bands with the retrieved PPSD plot. The quality of a station is divided into 5 classes for each of the 4 bands. Classes A, B, C, D define regular quality between LNM and HNM while the fifth class represents out of order stations with gain problems, missing data etc. Over all period bands about 100 different patterns are required to classify most of the stations available on the IRIS server. The results are written to a file and stations can be filtered by quality. AAAA represents the best quality in all 4 bands. Also a differentiation between instrument types as broad band and short period stations is possible. A regular check using the IRIS SeedLink and Mustang service allow users to be informed about new stations with a specific quality.

  3. Hippocampus and Medial Prefrontal Cortex Contributions to Trace and Contextual Fear Memory Expression over Time

    ERIC Educational Resources Information Center

    Beeman, Christopher L.; Bauer, Philip S.; Pierson, Jamie L.; Quinn, Jennifer J.

    2013-01-01

    Previous work has shown that damage to the dorsal hippocampus (DH) occurring at recent, but not remote, timepoints following acquisition produces a deficit in trace conditioned fear memory expression. The opposite pattern has been observed with lesions to the medial prefrontal cortex (mPFC). The present studies address: (1) whether these lesion…

  4. Interactive numerical flow visualization using stream surfaces

    NASA Technical Reports Server (NTRS)

    Hultquist, J. P. M.

    1990-01-01

    Particle traces and ribbons are often used to depict the structure of three-dimensional flowfields, but images produced using these models can be ambiguous. Stream surfaces offer a more visually intuitive method for the depiction of flowfields, but interactive response is needed to allow the user to place surfaces which reveal the essential features of a given flowfield. FLORA, a software package which supports the interactive calculation and display of stream surfaces on silicon graphics workstations, is described. Alternative methods for the integration of particle traces are examined, and calculation through computational space is found to provide rapid results with accuracy adequate for most purposes. Rapid calculation of traces is teamed with progressive refinement of appoximated surfaces. An initial approximation provides immediate user feedback, and subsequent improvement of the surface ensures that the final image is an accurate representation of the flowfield.

  5. Laser-based standoff detection of explosives: a critical review.

    PubMed

    Wallin, Sara; Pettersson, Anna; Ostmark, Henric; Hobro, Alison

    2009-09-01

    A review of standoff detection technologies for explosives has been made. The review is focused on trace detection methods (methods aiming to detect traces from handling explosives or the vapours surrounding an explosive charge due to the vapour pressure of the explosive) rather than bulk detection methods (methods aiming to detect the bulk explosive charge). The requirements for standoff detection technologies are discussed. The technologies discussed are mostly laser-based trace detection technologies, such as laser-induced-breakdown spectroscopy, Raman spectroscopy, laser-induced-fluorescence spectroscopy and IR spectroscopy but the bulk detection technologies millimetre wave imaging and terahertz spectroscopy are also discussed as a complement to the laser-based methods. The review includes novel techniques, not yet tested in realistic environments, more mature technologies which have been tested outdoors in realistic environments as well as the most mature millimetre wave imaging technique.

  6. A Multiscale Parallel Computing Architecture for Automated Segmentation of the Brain Connectome

    PubMed Central

    Knobe, Kathleen; Newton, Ryan R.; Schlimbach, Frank; Blower, Melanie; Reid, R. Clay

    2015-01-01

    Several groups in neurobiology have embarked into deciphering the brain circuitry using large-scale imaging of a mouse brain and manual tracing of the connections between neurons. Creating a graph of the brain circuitry, also called a connectome, could have a huge impact on the understanding of neurodegenerative diseases such as Alzheimer’s disease. Although considerably smaller than a human brain, a mouse brain already exhibits one billion connections and manually tracing the connectome of a mouse brain can only be achieved partially. This paper proposes to scale up the tracing by using automated image segmentation and a parallel computing approach designed for domain experts. We explain the design decisions behind our parallel approach and we present our results for the segmentation of the vasculature and the cell nuclei, which have been obtained without any manual intervention. PMID:21926011

  7. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Osorio, Mayra; Anglada, Guillem; Macías, Enrique

    We present Very Large Array observations at 7 mm that trace the thermal emission of large dust grains in the HD 169142 protoplanetary disk. Our images show a ring of enhanced emission of radius ∼25-30 AU, whose inner region is devoid of detectable 7 mm emission. We interpret this ring as tracing the rim of an inner cavity or gap, possibly created by a planet or a substellar companion. The ring appears asymmetric, with the western part significantly brighter than the eastern one. This azimuthal asymmetry is reminiscent of the lopsided structures that are expected to be produced as a consequence of trappingmore » of large dust grains. Our observations also reveal an outer annular gap at radii from ∼40 to ∼70 AU. Unlike other sources, the radii of the inner cavity, the ring, and the outer gap observed in the 7 mm images, which trace preferentially the distribution of large (millimeter/centimeter sized) dust grains, coincide with those obtained from a previous near-infrared polarimetric image, which traces scattered light from small (micron-sized) dust grains. We model the broadband spectral energy distribution and the 7 mm images to constrain the disk physical structure. From this modeling we infer the presence of a small (radius ∼0.6 AU) residual disk inside the central cavity, indicating that the HD 169142 disk is a pre-transitional disk. The distribution of dust in three annuli with gaps in between them suggests that the disk in HD 169142 is being disrupted by at least two planets or substellar objects.« less

  8. A methodology to event reconstruction from trace images.

    PubMed

    Milliet, Quentin; Delémont, Olivier; Sapin, Eric; Margot, Pierre

    2015-03-01

    The widespread use of digital imaging devices for surveillance (CCTV) and entertainment (e.g., mobile phones, compact cameras) has increased the number of images recorded and opportunities to consider the images as traces or documentation of criminal activity. The forensic science literature focuses almost exclusively on technical issues and evidence assessment [1]. Earlier steps in the investigation phase have been neglected and must be considered. This article is the first comprehensive description of a methodology to event reconstruction using images. This formal methodology was conceptualised from practical experiences and applied to different contexts and case studies to test and refine it. Based on this practical analysis, we propose a systematic approach that includes a preliminary analysis followed by four main steps. These steps form a sequence for which the results from each step rely on the previous step. However, the methodology is not linear, but it is a cyclic, iterative progression for obtaining knowledge about an event. The preliminary analysis is a pre-evaluation phase, wherein potential relevance of images is assessed. In the first step, images are detected and collected as pertinent trace material; the second step involves organising and assessing their quality and informative potential. The third step includes reconstruction using clues about space, time and actions. Finally, in the fourth step, the images are evaluated and selected as evidence. These steps are described and illustrated using practical examples. The paper outlines how images elicit information about persons, objects, space, time and actions throughout the investigation process to reconstruct an event step by step. We emphasise the hypothetico-deductive reasoning framework, which demonstrates the contribution of images to generating, refining or eliminating propositions or hypotheses. This methodology provides a sound basis for extending image use as evidence and, more generally, as clues in investigation and crime reconstruction processes. Copyright © 2015 Forensic Science Society. Published by Elsevier Ireland Ltd. All rights reserved.

  9. Software to model AXAF-I image quality

    NASA Technical Reports Server (NTRS)

    Ahmad, Anees; Feng, Chen

    1995-01-01

    A modular user-friendly computer program for the modeling of grazing-incidence type x-ray optical systems has been developed. This comprehensive computer software GRAZTRACE covers the manipulation of input data, ray tracing with reflectivity and surface deformation effects, convolution with x-ray source shape, and x-ray scattering. The program also includes the capabilities for image analysis, detector scan modeling, and graphical presentation of the results. A number of utilities have been developed to interface the predicted Advanced X-ray Astrophysics Facility-Imaging (AXAF-I) mirror structural and thermal distortions with the ray-trace. This software is written in FORTRAN 77 and runs on a SUN/SPARC station. An interactive command mode version and a batch mode version of the software have been developed.

  10. Multilayer X-ray imaging systems

    NASA Astrophysics Data System (ADS)

    Shealy, D. L.; Hoover, R. B.; Gabardi, D. R.

    1986-01-01

    An assessment of the imaging properties of multilayer X-ray imaging systems with spherical surfaces has been made. A ray trace analysis was performed to investigate the effects of using spherical substrates (rather than the conventional paraboloidal/hyperboloidal contours) for doubly reflecting Cassegrain telescopes. These investigations were carried out for mirrors designed to operate at selected soft X-ray/XUV wavelengths that are of significance for studies of the solar corona/transition region from the Stanford/MSFC Rocket X-Ray Telescope. The effects of changes in separation of the primary and secondary elements were also investigated. These theoretical results are presented as well as the results of ray trace studies to establish the resolution and vignetting effects as a function of field angle and system parameters.

  11. Multiscale Image Processing of Solar Image Data

    NASA Astrophysics Data System (ADS)

    Young, C.; Myers, D. C.

    2001-12-01

    It is often said that the blessing and curse of solar physics is too much data. Solar missions such as Yohkoh, SOHO and TRACE have shown us the Sun with amazing clarity but have also increased the amount of highly complex data. We have improved our view of the Sun yet we have not improved our analysis techniques. The standard techniques used for analysis of solar images generally consist of observing the evolution of features in a sequence of byte scaled images or a sequence of byte scaled difference images. The determination of features and structures in the images are done qualitatively by the observer. There is little quantitative and objective analysis done with these images. Many advances in image processing techniques have occured in the past decade. Many of these methods are possibly suited for solar image analysis. Multiscale/Multiresolution methods are perhaps the most promising. These methods have been used to formulate the human ability to view and comprehend phenomena on different scales. So these techniques could be used to quantitify the imaging processing done by the observers eyes and brains. In this work we present several applications of multiscale techniques applied to solar image data. Specifically, we discuss uses of the wavelet, curvelet, and related transforms to define a multiresolution support for EIT, LASCO and TRACE images.

  12. Root Gravitropism: Quantification, Challenges, and Solutions.

    PubMed

    Muller, Lukas; Bennett, Malcolm J; French, Andy; Wells, Darren M; Swarup, Ranjan

    2018-01-01

    Better understanding of root traits such as root angle and root gravitropism will be crucial for development of crops with improved resource use efficiency. This chapter describes a high-throughput, automated image analysis method to trace Arabidopsis (Arabidopsis thaliana) seedling roots grown on agar plates. The method combines a "particle-filtering algorithm with a graph-based method" to trace the center line of a root and can be adopted for the analysis of several root parameters such as length, curvature, and stimulus from original root traces.

  13. A new method of derived equatorial plasma bubbles motion by tracing OI 630 nm emission all-sky images

    NASA Astrophysics Data System (ADS)

    Li, M.; Yu, T.; Chunliang, X.; Zuo, X.; Liu, Z.

    2017-12-01

    A new method for estimating the equatorial plasma bubbles (EPBs) motions from airglow emission all-sky images is presented in this paper. This method, which is called 'cloud-derived wind technology' and widely used in satellite observation of wind, could reasonable derive zonal and meridional velocity vectors of EPBs drifts by tracking a series of successive airglow 630.0 nm emission images. Airglow emission images data are available from an all sky airglow camera in Hainan Fuke (19.5°N, 109.2°E) supported by China Meridional Project, which can receive the 630.0nm emission from the ionosphere F region at low-latitudes to observe plasma bubbles. A series of pretreatment technology, e.g. image enhancement, orientation correction, image projection are utilized to preprocess the raw observation. Then the regions of plasma bubble extracted from the images are divided into several small tracing windows and each tracing window can find a target window in the searching area in following image, which is considered as the position tracing window moved to. According to this, velocities in each window are calculated by using the technology of cloud-derived wind. When applying the cloud-derived wind technology, the maximum correlation coefficient (MCC) and the histogram of gradient (HOG) methods to find the target window, which mean to find the maximum correlation and the minimum euclidean distance between two gradient histograms in respectively, are investigated and compared in detail. The maximum correlation method is fianlly adopted in this study to analyze the velocity of plasma bubbles because of its better performance than HOG. All-sky images from Hainan Fuke, between August 2014 and October 2014, are analyzed to investigate the plasma bubble drift velocities using MCC method. The data at different local time at 9 nights are studied and find that zonal drift velocity in different latitude at different local time ranges from 50 m/s to 180 m/s and there is a peak value at about 20°N. For comparison and validation, EPBs motions obtained from three traditional methods are also investigated and compared with MC method. The advantages and disadvantages of using cloud-derived wind technology to calculate EPB drift velocity are discussed.

  14. Spatial and temporal patterns in trace element deposition to lakes in the Athabasca oil sands region (Alberta, Canada)

    NASA Astrophysics Data System (ADS)

    Cooke, Colin A.; Kirk, Jane L.; Muir, Derek C. G.; Wiklund, Johan A.; Wang, Xiaowa; Gleason, Amber; Evans, Marlene S.

    2017-12-01

    The mining and processing of the Athabasca oil sands (Alberta, Canada) has been occurring for decades; however, a lack of consistent regional monitoring has obscured the long-term environmental impact. Here, we present sediment core results to reconstruct spatial and temporal patterns in trace element deposition to lakes in the Athabasca oil sands region. Early mining operations (during the 1970s and 1980s) led to elevated V and Pb inputs to lakes located <50 km from mining operations. Subsequent improvements to mining and upgrading technologies since the 1980s have reduced V and Pb loading to near background levels at many sites. In contrast, Hg deposition increased by a factor of ~3 to all 20 lakes over the 20th century, reflecting global-scale patterns in atmospheric Hg emissions. Base cation deposition (from fugitive dust emissions) has not measurably impacted regional lake sediments. Instead, results from a principal components analysis suggest that the presence of carbonate bedrock underlying lakes located close to development appears to exert a first-order control over lake sediment base cation concentrations and overall lake sediment geochemical composition. Trace element concentrations generally did not exceed Canadian sediment quality guidelines, and no spatial or temporal trends were observed in the frequency of guideline exceedence. Our results demonstrate that early mining efforts had an even greater impact on trace element cycling than has been appreciated previously, placing recent monitoring efforts in a critical long-term context.

  15. Detection of trace explosives on relevant substrates using a mobile platform for photothermal infrared imaging spectroscopy (PT-IRIS)

    NASA Astrophysics Data System (ADS)

    Kendziora, Christopher A.; Furstenberg, Robert; Papantonakis, Michael; Nguyen, Viet; Byers, Jeff; McGill, R. Andrew

    2015-05-01

    This manuscript describes the results of recent tests regarding standoff detection of trace explosives on relevant substrates using a mobile platform. We are developing a technology for detection based on photo-thermal infrared (IR) imaging spectroscopy (PT-IRIS). This approach leverages one or more microfabricated IR quantum cascade lasers, tuned to strong absorption bands in the analytes and directed to illuminate an area on a surface of interest. An IR focal plane array is used to image the surface thermal emission upon laser illumination. The PT-IRIS signal is processed as a hyperspectral image cube comprised of spatial, spectral and temporal dimensions as vectors within a detection algorithm. Increased sensitivity to explosives and selectivity between different analyte types is achieved by narrow bandpass IR filters in the collection path. We have previously demonstrated the technique at several meters of stand-off distance indoors and in field tests, while operating the lasers below the infrared eye-safe intensity limit (100 mW/cm2). Sensitivity to explosive traces as small as a single 10 μm diameter particle (~1 ng) has been demonstrated. Analytes tested here include RDX, TNT, ammonium nitrate and sucrose. The substrates tested in this current work include metal, plastics, glass and painted car panels.

  16. Rapid simulation of X-ray transmission imaging for baggage inspection via GPU-based ray-tracing

    NASA Astrophysics Data System (ADS)

    Gong, Qian; Stoian, Razvan-Ionut; Coccarelli, David S.; Greenberg, Joel A.; Vera, Esteban; Gehm, Michael E.

    2018-01-01

    We present a pipeline that rapidly simulates X-ray transmission imaging for arbitrary system architectures using GPU-based ray-tracing techniques. The purpose of the pipeline is to enable statistical analysis of threat detection in the context of airline baggage inspection. As a faster alternative to Monte Carlo methods, we adopt a deterministic approach for simulating photoelectric absorption-based imaging. The highly-optimized NVIDIA OptiX API is used to implement ray-tracing, greatly speeding code execution. In addition, we implement the first hierarchical representation structure to determine the interaction path length of rays traversing heterogeneous media described by layered polygons. The accuracy of the pipeline has been validated by comparing simulated data with experimental data collected using a heterogenous phantom and a laboratory X-ray imaging system. On a single computer, our approach allows us to generate over 400 2D transmission projections (125 × 125 pixels per frame) per hour for a bag packed with hundreds of everyday objects. By implementing our approach on cloud-based GPU computing platforms, we find that the same 2D projections of approximately 3.9 million bags can be obtained in a single day using 400 GPU instances, at a cost of only 0.001 per bag.

  17. Imaging the Lower Crust and Moho Beneath Long Beach, CA Using Autocorrelations

    NASA Astrophysics Data System (ADS)

    Clayton, R. W.

    2017-12-01

    Three-dimensional images of the lower crust and Moho in a 10x10 km region beneath Long Beach, CA are constructed from autocorrelations of ambient noise. The results show the Moho at a depth of 15 km at the coast and dipping at 45 degrees inland to a depth of 25 km. The shape of the Moho interface is irregular in both the coast perpendicular and parallel directions. The lower crust appears as a zone of enhanced reflectivity with numerous small-scale structures. The autocorrelations are constructed from virtual source gathers that were computed from the dense Long Beach array that were used in the Lin et al (2013) study. All near zero-offset traces within a 200 m disk are stacked to produce a single autocorrelation at that point. The stack typically is over 50-60 traces. To convert the auto correlation to reflectivity as in Claerbout (1968), the noise source autocorrelation, which is estimated as the average of all autocorrelations is subtracted from each trace. The subsurface image is then constructed with a 0.1-2 Hz filter and AGC scaling. The main features of the image are confirmed with broadband receiver functions from the LASSIE survey (Ma et al, 2016). The use of stacked autocorrelations extends ambient noise into the lower crust.

  18. Non-imaging ray-tracing for sputtering simulation with apodization

    NASA Astrophysics Data System (ADS)

    Ou, Chung-Jen

    2018-04-01

    Although apodization patterns have been adopted for the analysis of sputtering sources, the analytical solutions for the film thickness equations are yet limited to only simple conditions. Empirical formulations for thin film sputtering lacking the flexibility in dealing with multi-substrate conditions, a suitable cost-effective procedure is required to estimate the film thickness distribution. This study reports a cross-discipline simulation program, which is based on discrete particle Monte-Carlo methods and has been successfully applied to a non-imaging design to solve problems associated with sputtering uniformity. Robustness of the present method is first proved by comparing it with a typical analytical solution. Further, this report also investigates the overall all effects cause by the sizes of the deposited substrate, such that the determination of the distance between the target surface and the apodization index can be complete. This verifies the capability of the proposed method for solving the sputtering film thickness problems. The benefit is that an optical thin film engineer can, using the same optical software, design a specific optical component and consider the possible coating qualities with thickness tolerance, during the design stage.

  19. Non-imaging ray-tracing for sputtering simulation with apodization

    NASA Astrophysics Data System (ADS)

    Ou, Chung-Jen

    2018-06-01

    Although apodization patterns have been adopted for the analysis of sputtering sources, the analytical solutions for the film thickness equations are yet limited to only simple conditions. Empirical formulations for thin film sputtering lacking the flexibility in dealing with multi-substrate conditions, a suitable cost-effective procedure is required to estimate the film thickness distribution. This study reports a cross-discipline simulation program, which is based on discrete particle Monte-Carlo methods and has been successfully applied to a non-imaging design to solve problems associated with sputtering uniformity. Robustness of the present method is first proved by comparing it with a typical analytical solution. Further, this report also investigates the overall all effects cause by the sizes of the deposited substrate, such that the determination of the distance between the target surface and the apodization index can be complete. This verifies the capability of the proposed method for solving the sputtering film thickness problems. The benefit is that an optical thin film engineer can, using the same optical software, design a specific optical component and consider the possible coating qualities with thickness tolerance, during the design stage.

  20. User's manual for University of Arizona APART program (Analysis Program - Arizona Radiation Trace)

    NASA Technical Reports Server (NTRS)

    Breault, R. P.

    1975-01-01

    A description and operating instructions for the Analysis Program Arizona Radiation Trace (APART) are given. This is a computer program that is able to efficiently and accurately predict the off-axis rejection characteristics of unwanted stray radiation for complex rotationally symmetric optical systems. The program first determines the critical objects or areas that scatter radiation to the image plane either directly or through imaging elements: this provides the opportunity to modify, if necessary, the design so that the number of critical areas seen by the image plane is reduced or the radiation to these critical areas is minimized. Next, the power distribution reaching the image plane and a sectional power map of all internal surfaces are computed. Angular information is also provided that relates the angle by which the radiation came into a surface to the angle by which the radiation is scattered out of the surface.

  1. Elemental and isotopic imaging to study biogeochemical functioning of intact soil micro-environments

    NASA Astrophysics Data System (ADS)

    Mueller, Carsten W.

    2017-04-01

    The complexity of soils extends from the ecosystem-scale to individual micro-aggregates, where nano-scale interactions between biota, organic matter (OM) and mineral particles are thought to control the long-term fate of soil carbon and nitrogen. It is known that such biogeochemical processes show disproportionally high reaction rates within nano- to micro-meter sized isolated zones ('hot spots') in comparison to surrounding areas. However, the majority of soil research is conducted on large bulk (> 1 g) samples, which are often significantly altered prior to analysis and analysed destructively. Thus it has previously been impossible to study elemental flows (e.g. C and N) between plants, microbes and soil in complex environments at the necessary spatial resolution within an intact soil system. By using nano-scale secondary ion mass spectrometry (NanoSIMS) in concert with other imaging techniques (e.g. scanning electron microscopy (SEM) and micro computed tomography (µCT)), classic analyses (isotopic and elemental analysis) and biochemical methods (e.g. GC-MS) it is possible to exhibit a more complete picture of soil processes at the micro-scale. I will present exemplarily results about the fate and distribution of organic C and N in complex micro-scale soil structures for a range of intact soil systems. Elemental imaging was used to study initial soil formation as an increase in the structural connectivity of micro-aggregates. Element distribution will be presented as a key to detect functional spatial patterns and biogeochemical hot spots in macro-aggregate functioning and development. In addition isotopic imaging will be demonstrated as a key to trace the fate of plant derived OM in the intact rhizosphere from the root to microbiota and mineral soil particles. Especially the use of stable isotope enrichment (e.g. 13CO2, 15NH4+) in conjunction with NanoSIMS allows to directly trace the fate of OM or nutrients in soils at the relevant scale (e.g. assimilate C / inorganic N in the rhizosphere). However, especially the elemental mapping requires more sophisticated computational approaches to evaluate (and quantify) the spatial heterogeneities of biogeochemical properties in intact soil systems.

  2. Fidelity analysis of mechanically aided copying/enlarging of Jan van Eyck's Portrait of Niccolo Albergati

    NASA Astrophysics Data System (ADS)

    Stork, David G.; Duarte, Marco

    2007-01-01

    The contemporary artist David Hockney has hypothesized that some early Renaissance painters secretly projected optical images onto their supports (canvas, paper, oak panel, ...), directly traced these projections, and then filled in the tracings with paint[1]. Hockney has presented somewhat impressionistic image evidence for this claim, but he and thin-film physicist Charles Falco also point to perspective anomalies, to the fidelity of passages in certain paintings, and to historical documents in search of support for this direct tracing claim[2]. Key visual evidence adduced in support of this tracing claim is a pair of portraits by Jan van Eyck of Cardinal Niccolo Albergati - a small informal silverpoint study of 1431 and a slightly larger formal work in oil on panel of 1432. The contours in these two works bear striking resemblance in shape (after being appropriately scaled) and there are at least two "relative shifts" - passages that co-align well after a spatial shift of one of the images [2]. This evidence has led the theory's proponents to claim that van Eyck copied the silverpoint by means of an optical projector, or epidiascope, the relative shifts due to him accidentally bumping the setup during the copying. Previous tests of the tracing theory for these works considered four candidate methods van Eyck might have used to copied and enlarged the image in the silverpoint study: unaided ("by eye"), mechanical, grid, and the optical projection method itself [3]. Based on the full evidence, including the recent discovery of tiny pinprick holes in the silverpoint, reenactments, material culture and optical knowledge in the early 15th century, the mechanical method was judged most plausible and optical method the least plausible[3]. However, this earlier work did not adequately test whether a trained artist could "re-enact" the copying by mechanical methods: "Although we have not explicitly verified that high fidelities can be achieved through the use of a Reductionszirkel(or compass, protractor and ruler), there are no significant challenges in this regard"[3]. Our work here seeks to complete the test of the direct tracing claim. As we shall see, a talented realist artist can indeed achieve fidelity comparable to that found in these works, a result that re-affirms the earlier conclusion that when copying and enlarging the silverpoint image, it is more likely that van Eyck used a well-known, simple, mechanical method than a then unknown, secret and complicated optical method.

  3. Evaluation of LiDAR Imagery as a Tool for Mapping the Northern San Andreas Fault in Heavily Forested Areas of Mendocino and Sonoma Counties, California

    NASA Astrophysics Data System (ADS)

    Prentice, C. S.; Koehler, R. D.; Baldwin, J. N.; Harding, D. J.

    2004-12-01

    We are mapping in detail active traces of the San Andreas Fault in Mendocino and Sonoma Counties in northern California, using recently acquired airborne LiDAR (also known as ALSM) data. The LiDAR data set provides a powerful new tool for mapping geomorphic features related to the San Andreas Fault because it can be used to produce high-resolution images of the ground surfaces beneath the forest canopy along the 70-km-long section of the fault zone encompassed by the data. Our effort represents the first use of LiDAR data to map active fault traces in a densely vegetated region along the San Andreas Fault. We are using shaded relief images generated from bare-earth DEMs to conduct detailed mapping of fault-related geomorphic features (e.g. scarps, offset streams, linear valleys, shutter ridges, and sag ponds) between Fort Ross and Point Arena. Initially, we map fault traces digitally, on-screen, based only on the geomorphology interpreted from LiDAR images. We then conduct field reconnaissance using the initial computer-based maps in order to verify and further refine our mapping. We found that field reconnaissance is of utmost importance in producing an accurate and detailed map of fault traces. Many lineaments identified as faults from the on-screen images were determined in the field to be old logging roads or other features unrelated to faulting. Also, in areas where the resolution of LiDAR data is poor, field reconnaissance, coupled with topographic maps and aerial photographs, permits a more accurate location of fault-related geomorphic features. LiDAR images are extremely valuable as a base for field mapping in this heavily forested area, and the use of LiDAR is far superior to traditional mapping techniques relying only on aerial photography and 7.5 minute USGS quadrangle topographic maps. Comparison with earlier mapping of the northern San Andreas fault (Brown and Wolfe, 1972) shows that in some areas the LiDAR data allow a correction of the fault trace location of up to several hundred meters. To date we have field checked approximately 24 km of the 70-km-long section of the fault for which LiDAR data is available. The remaining 46 km will be field checked in 2005. The result will be a much more accurate map of the active traces of the northern San Andreas Fault, which will be of great use for future fault studies.

  4. Evolution of the current system during solar wind pressure pulses based on aurora and magnetometer observations

    NASA Astrophysics Data System (ADS)

    Nishimura, Yukitoshi; Kikuchi, Takashi; Ebihara, Yusuke; Yoshikawa, Akimasa; Imajo, Shun; Li, Wen; Utada, Hisashi

    2016-08-01

    We investigated evolution of ionospheric currents during sudden commencements using a ground magnetometer network in conjunction with an all-sky imager, which has the advantage of locating field-aligned currents much more accurately than ground magnetometers. Preliminary (PI) and main (MI) impulse currents showed two-cell patterns propagating antisunward, particularly during a southward interplanetary magnetic field (IMF). Although this overall pattern is consistent with the Araki (solar wind sources of magnetospheric ultra-low-frequency waves. Geophysical monograph series, vol 81. AGU, Washington, DC, pp 183-200, 1994. doi: 10.1029/GM081p0183) model, we found several interesting features. The PI and MI currents in some events were highly asymmetric with respect to the noon-midnight meridian; the post-noon sector did not show any notable PI signal, but only had an MI starting earlier than the pre-noon MI. Not only equivalent currents but also aurora and equatorial magnetometer data supported the much weaker PI response. We suggest that interplanetary shocks impacting away from the subsolar point caused the asymmetric current pattern. Additionally, even when PI currents form in both pre- and post-noon sectors, they can initiate and disappear at different timings. The PI currents did not immediately disappear but coexisted with the MI currents for the first few minutes of the MI. During a southward IMF, the MI currents formed equatorward of a preexisting DP-2, indicating that the MI currents are a separate structure from a preexisting DP-2. In contrast, the MI currents under a northward IMF were essentially an intensification of a preexisting DP-2. The magnetometer and imager combination has been shown to be a powerful means for tracing evolution of ionospheric currents, and we showed various types of ionospheric responses under different upstream conditions.

  5. Comparison of hand and semiautomatic tracing methods for creating maxillofacial artificial organs using sequences of computed tomography (CT) and cone beam computed tomography (CBCT) images.

    PubMed

    Szabo, Bence T; Aksoy, Seçil; Repassy, Gabor; Csomo, Krisztian; Dobo-Nagy, Csaba; Orhan, Kaan

    2017-06-09

    The aim of this study was to compare the paranasal sinus volumes obtained by manual and semiautomatic imaging software programs using both CT and CBCT imaging. 121 computed tomography (CT) and 119 cone beam computed tomography (CBCT) examinations were selected from the databases of the authors' institutes. The Digital Imaging and Communications in Medicine (DICOM) images were imported into 3-dimensonal imaging software, in which hand mode and semiautomatic tracing methods were used to measure the volumes of both maxillary sinuses and the sphenoid sinus. The determined volumetric means were compared to previously published averages. Isometric CBCT-based volume determination results were closer to the real volume conditions, whereas the non-isometric CT-based volume measurements defined coherently lower volumes. By comparing the 2 volume measurement modes, the values gained from hand mode were closer to the literature data. Furthermore, CBCT-based image measurement results corresponded to the known averages. Our results suggest that CBCT images provide reliable volumetric information that can be depended on for artificial organ construction, and which may aid the guidance of the operator prior to or during the intervention.

  6. Accumulation, sources and health risks of trace metals in elevated geochemical background soils used for greenhouse vegetable production in southwestern China.

    PubMed

    Zhang, Haidong; Huang, Biao; Dong, Linlin; Hu, Wenyou; Akhtar, Mohammad Saleem; Qu, Mingkai

    2017-03-01

    Greenhouse vegetable cultivation with substantive manure and fertilizer input on soils with an elevated geochemical background can accumulate trace metals in soils and plants leading to human health risks. Studies on trace metal accumulation over a land use shift duration in an elevated geochemical background scenario are lacking. Accumulation characteristics of seven trace metals in greenhouse soil and edible plants were evaluated along with an assessment of the health risk to the consumers. A total of 118 greenhouse surface soils (0-20cm) and 30 vegetables were collected from Kunming City, Yunnan Province, southwestern China, and analyzed for total Cd, Pb, Cu, Zn, As, Hg, and Cr content by ICP-MS and AFS. The trace metals were ordered Cu>Cd>Hg>Zn>Pb>As>Cr in greenhouse soils accumulation level, and the geo-accumulation index suggested the soil more severely polluted with Cd, Cu, Hg and Zn. The greenhouse and open-field soils had significant difference in Cd, Cr and Zn. The duration of shift from paddy to greenhouse land-use significantly influenced trace metal accumulation with a dramatic change during five to ten year greenhouse land-use, and continuous increase of Cd and Hg. A spatial pattern from north to south for Cd and Hg and a zonal pattern for Cu and Zn were found. An anthropogenic source primarily caused trace metal accumulation, where the principal component analysis/multiple linear regression indicated a contribution 61.2%. While the assessment showed no potential risk for children and adults, the hazard health risks index was greater than one for adolescents. The extended duration of land use as greenhouses caused the trace metal accumulation, rotation in land use should be promoted to reduce the health risks. Copyright © 2016. Published by Elsevier Inc.

  7. Optical properties of electrohydrodynamic convection patterns: rigorous and approximate methods.

    PubMed

    Bohley, Christian; Heuer, Jana; Stannarius, Ralf

    2005-12-01

    We analyze the optical behavior of two-dimensionally periodic structures that occur in electrohydrodynamic convection (EHC) patterns in nematic sandwich cells. These structures are anisotropic, locally uniaxial, and periodic on the scale of micrometers. For the first time, the optics of these structures is investigated with a rigorous method. The method used for the description of the electromagnetic waves interacting with EHC director patterns is a numerical approach that discretizes directly the Maxwell equations. It works as a space-grid-time-domain method and computes electric and magnetic fields in time steps. This so-called finite-difference-time-domain (FDTD) method is able to generate the fields with arbitrary accuracy. We compare this rigorous method with earlier attempts based on ray-tracing and analytical approximations. Results of optical studies of EHC structures made earlier based on ray-tracing methods are confirmed for thin cells, when the spatial periods of the pattern are sufficiently large. For the treatment of small-scale convection structures, the FDTD method is without alternatives.

  8. Design of a New Near-Infrared Ratiometric Fluorescent Nanoprobe for Real-Time Imaging of Superoxide Anions and Hydroxyl Radicals in Live Cells and in Situ Tracing of the Inflammation Process in Vivo.

    PubMed

    Liu, Rongjun; Zhang, Liangliang; Chen, Yunyun; Huang, Zirong; Huang, Yong; Zhao, Shulin

    2018-04-03

    The superoxide anion (O 2 •- ) and hydroxyl radical ( • OH) are important reactive oxygen species (ROS) used as biomarkers in physiological and pathological processes. ROS generation is closely related to the development of a variety of inflammatory diseases. However, the changes of ROS are difficult to ascertain with in situ tracing of the inflammation process by real-time monitoring, owing to the short half-lives of ROS and high tissue autofluorescence in vivo. Here we developed a new near-infrared (NIR) ratiometric fluorescence imaging approach by using a Förster resonance energy transfer (FRET)-based ratiometric fluorescent nanoprobe for real-time monitoring of O 2 •- and • OH generation and also by using in situ tracing of the inflammation process in vivo. The proposed nanoprobe was composed of PEG functionalized GQDs as the energy donor connecting to hydroIR783, serving as both the O 2 •- / • OH recognizing ligand and the energy acceptor. The nanoprobe not only exhibited a fast response to O 2 •- and • OH but also presented good biocomapatibility as well as a high photostability and signal-to-noise ratio. We have demonstrated that the proposed NIR ratiometric fluorescent nanoprobe can monitor the changes of O 2 •- and • OH in living RAW 264.7 cells via a drug mediating inflammation model and further realized visual monitoring of the change of O 2 •- and • OH in mice for in situ tracing of the inflammation process. Our design may provide a new paradigm for long-term and real-time imaging applications for in vivo tracing of the pathological process related to the inflammatory diseases.

  9. Heat tracing to determine spatial patterns of hyporheic exchange across a river transect

    NASA Astrophysics Data System (ADS)

    Lu, Chengpeng; Chen, Shuai; Zhang, Ying; Su, Xiaoru; Chen, Guohao

    2017-09-01

    Significant spatial variability of water fluxes may exist at the water-sediment interface in river channels and has great influence on a variety of water issues. Understanding the complicated flow systems controlling the flux exchanges along an entire river is often limited due to averaging of parameters or the small number of discrete point measurements usually used. This study investigated the spatial pattern of the hyporheic flux exchange across a river transect in China, using the heat tracing approach. This was done with measurements of temperature at high spatial resolution during a 64-h monitoring period and using the data to identify the spatial pattern of the hyporheic exchange flux with the aid of a one-dimensional conduction-advection-dispersion model (VFLUX). The threshold of neutral exchange was considered as 126 L m-2 d-1 in this study and the heat tracing results showed that the change patterns of vertical hyporheic flux varied with buried depth along the river transect; however, the hyporheic flux was not simply controlled by the streambed hydraulic conductivity and water depth in the river transect. Also, lateral flow dominated the hyporheic process within the shallow high-permeability streambed, while the vertical flow was dominant in the deep low-permeability streambed. The spatial pattern of hyporheic exchange across the river transect was naturally controlled by the heterogeneity of the streambed and the bedform of the stream cross-section. Consequently, a two-dimensional conceptual illustration of the hyporheic process across the river transect is proposed, which could be applicable to river transects of similar conditions.

  10. Two Automated Techniques for Carotid Lumen Diameter Measurement: Regional versus Boundary Approaches.

    PubMed

    Araki, Tadashi; Kumar, P Krishna; Suri, Harman S; Ikeda, Nobutaka; Gupta, Ajay; Saba, Luca; Rajan, Jeny; Lavra, Francesco; Sharma, Aditya M; Shafique, Shoaib; Nicolaides, Andrew; Laird, John R; Suri, Jasjit S

    2016-07-01

    The degree of stenosis in the carotid artery can be predicted using automated carotid lumen diameter (LD) measured from B-mode ultrasound images. Systolic velocity-based methods for measurement of LD are subjective. With the advancement of high resolution imaging, image-based methods have started to emerge. However, they require robust image analysis for accurate LD measurement. This paper presents two different algorithms for automated segmentation of the lumen borders in carotid ultrasound images. Both algorithms are modeled as a two stage process. Stage one consists of a global-based model using scale-space framework for the extraction of the region of interest. This stage is common to both algorithms. Stage two is modeled using a local-based strategy that extracts the lumen interfaces. At this stage, the algorithm-1 is modeled as a region-based strategy using a classification framework, whereas the algorithm-2 is modeled as a boundary-based approach that uses the level set framework. Two sets of databases (DB), Japan DB (JDB) (202 patients, 404 images) and Hong Kong DB (HKDB) (50 patients, 300 images) were used in this study. Two trained neuroradiologists performed manual LD tracings. The mean automated LD measured was 6.35 ± 0.95 mm for JDB and 6.20 ± 1.35 mm for HKDB. The precision-of-merit was: 97.4 % and 98.0 % w.r.t to two manual tracings for JDB and 99.7 % and 97.9 % w.r.t to two manual tracings for HKDB. Statistical tests such as ANOVA, Chi-Squared, T-test, and Mann-Whitney test were conducted to show the stability and reliability of the automated techniques.

  11. Accurate lumen diameter measurement in curved vessels in carotid ultrasound: an iterative scale-space and spatial transformation approach.

    PubMed

    Krishna Kumar, P; Araki, Tadashi; Rajan, Jeny; Saba, Luca; Lavra, Francesco; Ikeda, Nobutaka; Sharma, Aditya M; Shafique, Shoaib; Nicolaides, Andrew; Laird, John R; Gupta, Ajay; Suri, Jasjit S

    2017-08-01

    Monitoring of cerebrovascular diseases via carotid ultrasound has started to become a routine. The measurement of image-based lumen diameter (LD) or inter-adventitial diameter (IAD) is a promising approach for quantification of the degree of stenosis. The manual measurements of LD/IAD are not reliable, subjective and slow. The curvature associated with the vessels along with non-uniformity in the plaque growth poses further challenges. This study uses a novel and generalized approach for automated LD and IAD measurement based on a combination of spatial transformation and scale-space. In this iterative procedure, the scale-space is first used to get the lumen axis which is then used with spatial image transformation paradigm to get a transformed image. The scale-space is then reapplied to retrieve the lumen region and boundary in the transformed framework. Then, inverse transformation is applied to display the results in original image framework. Two hundred and two patients' left and right common carotid artery (404 carotid images) B-mode ultrasound images were retrospectively analyzed. The validation of our algorithm has done against the two manual expert tracings. The coefficient of correlation between the two manual tracings for LD was 0.98 (p < 0.0001) and 0.99 (p < 0.0001), respectively. The precision of merit between the manual expert tracings and the automated system was 97.7 and 98.7%, respectively. The experimental analysis demonstrated superior performance of the proposed method over conventional approaches. Several statistical tests demonstrated the stability and reliability of the automated system.

  12. Trace Elements and Carbon and Nitrogen Stable Isotopes in Organisms from a Tropical Coastal Lagoon

    PubMed Central

    van Hattum, B.; de Boer, J.; van Bodegom, P. M.; Rezende, C. E.; Salomons, W.

    2010-01-01

    Trace elements (Fe, Mn, Al, Zn, Cr, Cu, Ni, Pb, Cd, Hg, and As) and stable isotope ratios (δ13C and δ15N) were analyzed in sediments, invertebrates, and fishes from a tropical coastal lagoon influenced by iron ore mining and processing activities to assess the differences in trace element accumulation patterns among species and to investigate relations with trophic levels of the organisms involved. Overall significant negative relations between trophic level (given by 15N) and trace element concentrations in gastropods and crustaceans showed differences in internal controls of trace element accumulation among the species of different trophic positions, leading to trace element dilution. Generally, no significant relation between δ15N and trace element concentrations was observed among fish species, probably due to omnivory in a number of species as well as fast growth. Trace element accumulation was observed in the fish tissues, with higher levels of most trace elements found in liver compared with muscle and gill. Levels of Fe, Mn, Al, and Hg in invertebrates, and Fe and Cu in fish livers, were comparable with levels in organisms and tissues from other contaminated areas. Trace element levels in fish muscle were below the international safety baseline standards for human consumption. PMID:20217062

  13. Trace elements and carbon and nitrogen stable isotopes in organisms from a tropical coastal lagoon.

    PubMed

    Pereira, A A; van Hattum, B; de Boer, J; van Bodegom, P M; Rezende, C E; Salomons, W

    2010-10-01

    Trace elements (Fe, Mn, Al, Zn, Cr, Cu, Ni, Pb, Cd, Hg, and As) and stable isotope ratios (delta(13)C and delta(15)N) were analyzed in sediments, invertebrates, and fishes from a tropical coastal lagoon influenced by iron ore mining and processing activities to assess the differences in trace element accumulation patterns among species and to investigate relations with trophic levels of the organisms involved. Overall significant negative relations between trophic level (given by (15)N) and trace element concentrations in gastropods and crustaceans showed differences in internal controls of trace element accumulation among the species of different trophic positions, leading to trace element dilution. Generally, no significant relation between delta(15)N and trace element concentrations was observed among fish species, probably due to omnivory in a number of species as well as fast growth. Trace element accumulation was observed in the fish tissues, with higher levels of most trace elements found in liver compared with muscle and gill. Levels of Fe, Mn, Al, and Hg in invertebrates, and Fe and Cu in fish livers, were comparable with levels in organisms and tissues from other contaminated areas. Trace element levels in fish muscle were below the international safety baseline standards for human consumption.

  14. Velocity vector imaging fails to quantify regional myocardial dysfunction in a mouse model of isoprenaline-induced cardiotoxicity.

    PubMed

    Täng, Margareta Scharin; Redfors, Bjorn; Shao, Yangzhen; Omerovic, Elmir

    2012-08-01

    Regional myocardial deformation patterns are important in a variety of cardiac diseases, including stress-induced cardiomyopathy. Velocity-vector-based imaging is a speckle-tracking echocardiography (STE)-based algorithm that has been shown to allow in-depth cardiac phenotyping in humans. Regional posterior wall myocardial dysfunction occurs during severe isoprenaline stress in mice. We have previously shown that regional posterior wall end-systolic transmural strain decreases after severe isoprenaline toxicity in mice. We hypothesize that STE can detect and further quantify these perturbations. Twenty-three mice underwent echocardiographic examination using the VEVO2100 system. Regional transmural radial strain and strain rate were calculated in both parasternal short-axis and parasternal long-axis cine loops using the VisualSonics VEVO 2100 velocity vector imaging (VVI) STE algorithm. Eight C57BL/6 mice underwent baseline echocardiographic examination using the VisualSonics VEVO 770 system, which can acquire >1,000 frames/s cine loops. In a parasternal short-axis cine loop, the heart was divided into six segments, and regional fractional wall thickening (FWT) was assessed manually. The same protocols were also performed 90 minutes post 400 mg/kg intraperitoneally isoprenaline. Regional myocardial FWT is uniform at baseline but increases significantly in anterolateral segments, whereas it decreases significantly in posterior segments (P < 0.05). A similar pattern is seen using the VVI algorithm although the variance is larger, and differences are smaller and fail to reach significance. VVI is less sensitive in detecting regional perturbations in myocardial function than manual tracing, possibly due to the low frame rate in the cine loops used. © 2012, Wiley Periodicals, Inc.

  15. Thermal particle image velocity estimation of fire plume flow

    Treesearch

    Xiangyang Zhou; Lulu Sun; Shankar Mahalingam; David R. Weise

    2003-01-01

    For the purpose of studying wildfire spread in living vegetation such as chaparral in California, a thermal particle image velocity (TPIV) algorithm for nonintrusively measuring flame gas velocities through thermal infrared (IR) imagery was developed. By tracing thermal particles in successive digital IR images, the TPIV algorithm can estimate the velocity field in a...

  16. Viewer Makes Radioactivity "Visible"

    NASA Technical Reports Server (NTRS)

    Yin, L. I.

    1983-01-01

    Battery operated viewer demonstrates feasibility of generating threedimensional visible light simulations of objects that emit X-ray or gamma rays. Ray paths are traced for two pinhold positions to show location of reconstructed image. Images formed by pinholes are converted to intensified visible-light images. Applications range from radioactivity contamination surveys to monitoring radioisotope absorption in tumors.

  17. Quantitative Evaluation of a Planetary Renderer for Terrain Relative Navigation

    NASA Astrophysics Data System (ADS)

    Amoroso, E.; Jones, H.; Otten, N.; Wettergreen, D.; Whittaker, W.

    2016-11-01

    A ray-tracing computer renderer tool is presented based on LOLA and LROC elevation models and is quantitatively compared to LRO WAC and NAC images for photometric accuracy. We investigated using rendered images for terrain relative navigation.

  18. Awake, Offline Processing during Associative Learning

    PubMed Central

    Nestor, Adrian; Tarr, Michael J.; Creswell, J. David

    2016-01-01

    Offline processing has been shown to strengthen memory traces and enhance learning in the absence of conscious rehearsal or awareness. Here we evaluate whether a brief, two-minute offline processing period can boost associative learning and test a memory reactivation account for these offline processing effects. After encoding paired associates, subjects either completed a distractor task for two minutes or were immediately tested for memory of the pairs in a counterbalanced, within-subjects functional magnetic resonance imaging study. Results showed that brief, awake, offline processing improves memory for associate pairs. Moreover, multi-voxel pattern analysis of the neuroimaging data suggested reactivation of encoded memory representations in dorsolateral prefrontal cortex during offline processing. These results signify the first demonstration of awake, active, offline enhancement of associative memory and suggest that such enhancement is accompanied by the offline reactivation of encoded memory representations. PMID:27119345

  19. Awake, Offline Processing during Associative Learning.

    PubMed

    Bursley, James K; Nestor, Adrian; Tarr, Michael J; Creswell, J David

    2016-01-01

    Offline processing has been shown to strengthen memory traces and enhance learning in the absence of conscious rehearsal or awareness. Here we evaluate whether a brief, two-minute offline processing period can boost associative learning and test a memory reactivation account for these offline processing effects. After encoding paired associates, subjects either completed a distractor task for two minutes or were immediately tested for memory of the pairs in a counterbalanced, within-subjects functional magnetic resonance imaging study. Results showed that brief, awake, offline processing improves memory for associate pairs. Moreover, multi-voxel pattern analysis of the neuroimaging data suggested reactivation of encoded memory representations in dorsolateral prefrontal cortex during offline processing. These results signify the first demonstration of awake, active, offline enhancement of associative memory and suggest that such enhancement is accompanied by the offline reactivation of encoded memory representations.

  20. Context-dependent memory traces in the crab’s mushroom bodies: Functional support for a common origin of high-order memory centers

    PubMed Central

    Maza, Francisco Javier; Sztarker, Julieta; Shkedy, Avishag; Peszano, Valeria Natacha; Locatelli, Fernando Federico; Delorenzi, Alejandro

    2016-01-01

    The hypothesis of a common origin for the high-order memory centers in bilateral animals is based on the evidence that several key features, including gene expression and neuronal network patterns, are shared across several phyla. Central to this hypothesis is the assumption that the arthropods’ higher order neuropils of the forebrain [the mushroom bodies (MBs) of insects and the hemiellipsoid bodies (HBs) of crustaceans] are homologous structures. However, even though involvement in memory processes has been repeatedly demonstrated for the MBs, direct proof of such a role in HBs is lacking. Here, through neuroanatomical and immunohistochemical analysis, we identified, in the crab Neohelice granulata, HBs that resemble the calyxless MBs found in several insects. Using in vivo calcium imaging, we revealed training-dependent changes in neuronal responses of vertical and medial lobes of the HBs. These changes were stimulus-specific, and, like in the hippocampus and MBs, the changes reflected the context attribute of the memory trace, which has been envisioned as an essential feature for the HBs. The present study constitutes functional evidence in favor of a role for the HBs in memory processes, and provides key physiological evidence supporting a common origin of the arthropods’ high-order memory centers. PMID:27856766

  1. Machine-assisted verification of latent fingerprints: first results for nondestructive contact-less optical acquisition techniques with a CWL sensor

    NASA Astrophysics Data System (ADS)

    Hildebrandt, Mario; Kiltz, Stefan; Krapyvskyy, Dmytro; Dittmann, Jana; Vielhauer, Claus; Leich, Marcus

    2011-11-01

    A machine-assisted analysis of traces from crime scenes might be possible with the advent of new high-resolution non-destructive contact-less acquisition techniques for latent fingerprints. This requires reliable techniques for the automatic extraction of fingerprint features from latent and exemplar fingerprints for matching purposes using pattern recognition approaches. Therefore, we evaluate the NIST Biometric Image Software for the feature extraction and verification of contact-lessly acquired latent fingerprints to determine potential error rates. Our exemplary test setup includes 30 latent fingerprints from 5 people in two test sets that are acquired from different surfaces using a chromatic white light sensor. The first test set includes 20 fingerprints on two different surfaces. It is used to determine the feature extraction performance. The second test set includes one latent fingerprint on 10 different surfaces and an exemplar fingerprint to determine the verification performance. This utilized sensing technique does not require a physical or chemical visibility enhancement of the fingerprint residue, thus the original trace remains unaltered for further investigations. No particular feature extraction and verification techniques have been applied to such data, yet. Hence, we see the need for appropriate algorithms that are suitable to support forensic investigations.

  2. Combining hyperspectral imaging and Raman spectroscopy for remote chemical sensing

    NASA Astrophysics Data System (ADS)

    Ingram, John M.; Lo, Edsanter

    2008-04-01

    The Photonics Research Center at the United States Military Academy is conducting research to demonstrate the feasibility of combining hyperspectral imaging and Raman spectroscopy for remote chemical detection over a broad area of interest. One limitation of future trace detection systems is their ability to analyze large areas of view. Hyperspectral imaging provides a balance between fast spectral analysis and scanning area. Integration of a hyperspectral system capable of remote chemical detection will greatly enhance our soldiers' ability to see the battlefield to make threat related decisions. It can also queue the trace detection systems onto the correct interrogation area saving time and reconnaissance/surveillance resources. This research develops both the sensor design and the detection/discrimination algorithms. The one meter remote detection without background radiation is a simple proof of concept.

  3. Negative dysphotopsia: Causes and rationale for prevention and treatment.

    PubMed

    Holladay, Jack T; Simpson, Michael J

    2017-02-01

    To determine the cause of negative dysphotopsia using standard ray-tracing techniques and identify the primary and secondary causative factors. Department of Ophthalmology, Baylor College of Medicine, Houston, Texas, USA. Experimental study. Zemax ray-tracing software was used to evaluate pseudophakic and phakic eye models to show the location of retinal field images from various visual field objects. Phakic retinal field angles (RFAs) were used as a reference for the perceived field locations for retinal images in pseudophakic eyes. In a nominal acrylic pseudophakic eye model with a 2.5 mm diameter pupil, the maximum RFA from rays refracted by the intraocular lens (IOL) was 85.7 degrees and the minimum RFA for rays missing the optic of the IOL was 88.3 degrees, leaving a dark gap (shadow) of 2.6 degrees in the extreme temporal field. The width of the shadow was more prominent for a smaller pupil, a larger angle kappa, an equi-biconvex or plano-convex IOL shape, and a smaller axial distance from iris to IOL and with the anterior capsule overlying the nasal IOL. Secondary factors included IOL edge design, material, diameter, decentration, tilt, and aspheric surfaces. Standard ray-tracing techniques showed that a shadow is present when there is a gap between the retinal images formed by rays missing the optic of the IOL and rays refracted by the IOL. Primary and secondary factors independently affected the width and location of the gap (or overlap). The ray tracing also showed a constriction and double retinal imaging in the extreme temporal visual field. Copyright © 2017 ASCRS and ESCRS. Published by Elsevier Inc. All rights reserved.

  4. Simulation of complex phenomena in optical fibres

    NASA Astrophysics Data System (ADS)

    Allington-Smith, Jeremy; Murray, Graham; Lemke, Ulrike

    2012-12-01

    Optical fibres are essential for many types of highly multiplexed and precision spectroscopy. The success of the new generation of multifibre instruments under construction to investigate fundamental problems in cosmology, such as the nature of dark energy, requires accurate modellization of the fibre system to achieve their signal-to-noise ratio (SNR) goals. Despite their simple construction, fibres exhibit unexpected behaviour including non-conservation of etendue (focal ratio degradation, FRD) and modal noise. Furthermore, new fibre geometries (non-circular or tapered) have become available to improve the scrambling properties that, together with modal noise, limit the achievable SNR in precision spectroscopy. These issues have often been addressed by extensive tests on candidate fibres and their terminations, but these are difficult and time-consuming. Modelling by ray tracing and wave analysis is possible with commercial software packages, but these do not address the more complex features, in particular FRD. We use a phase-tracking ray-tracing method to provide a practical description of FRD derived from our previous experimental work on circular fibres and apply it to non-standard fibres. This allows the relationship between scrambling and FRD to be quantified for the first time. We find that scrambling primarily affects the shape of the near-field pattern but has negligible effect on the barycentre. FRD helps to homogenize the near-field pattern but does not make it completely uniform. Fibres with polygonal cross-section improve scrambling without amplifying the FRD. Elliptical fibres, in conjunction with tapering, may offer an efficient means of image slicing to improve the product of resolving power and throughput, but the result is sensitive to the details of illumination. We also investigated the performance of fibres close to the limiting numerical aperture since this may affect the uniformity of the SNR for some prime focus fibre instrumentation.

  5. Biodistribution of strontium and barium in the developing and mature skeleton of rats.

    PubMed

    Panahifar, Arash; Chapman, L Dean; Weber, Lynn; Samadi, Nazanin; Cooper, David M L

    2018-06-19

    Bone acts as a reservoir for many trace elements. Understanding the extent and pattern of elemental accumulation in the skeleton is important from diagnostic, therapeutic, and toxicological perspectives. Some elements are simply adsorbed to bone surfaces by electric force and are buried under bone mineral, while others can replace calcium atoms in the hydroxyapatite structure. In this article, we investigated the extent and pattern of skeletal uptake of barium and strontium in two different age groups, growing, and skeletally mature, in healthy rats. Animals were dosed orally for 4 weeks with either strontium chloride or barium chloride or combined. The distribution of trace elements was imaged in 3D using synchrotron K-edge subtraction micro-CT at 13.5 µm resolution and 2D electron probe microanalysis (EPMA). Bulk concentration of the elements in serum and bone (tibiae) was also measured by mass spectrometry to study the extent of uptake. Toxicological evaluation did not show any cardiotoxicity or nephrotoxicity. Both elements were primarily deposited in the areas of active bone turnover such as growth plates and trabecular bone. Barium and strontium concentration in the bones of juvenile rats was 2.3 times higher, while serum levels were 1.4 and 1.5 times lower than adults. In all treatment and age groups, strontium was preferred to barium even though equal molar concentrations were dosed. This study displayed spatial co-localization of barium and strontium in bone for the first time. Barium and strontium can be used as surrogates for calcium to study the pathological changes in animal models of bone disease and to study the effects of pharmaceutical compounds on bone micro-architecture and bone remodeling in high spatial sensitivity and precision.

  6. Methods for reducing ghost rays on the Wolter-I focusing figures of the FOXSI rocket payload

    NASA Astrophysics Data System (ADS)

    Buitrago-Casas, Juan Camilo; Glesener, Lindsay; Christe, Steven; Ramsey, Brian; Elsner, Ronald; Courtade, Sasha; Vievering, Juliana; Subramania, Athiray; Krucker, Sam; Bale, Stuart

    2017-08-01

    In high energy solar astrophysics, imaging hard X-rays by direct focusing offers higher dynamic range and greater sensitivity compared to past techniques that used indirect imaging. The Focusing Optics X-ray Solar Imager (FOXSI) is a sounding rocket payload which uses seven sets of nested Wolter-I figured mirrors that, together with seven high-sensitive semiconductor detectors, observes the Sun in hard X-rays by direct focusing. The FOXSI rocket has successfully flown twice and is funded to fly a third time in summer 2018.The Wolter-I geometry consists of two consecutive mirrors, one paraboloid, and one hyperboloid, that reflect photons at grazing angles. Correctly focused X-rays reflect twice, once per mirror segment. For extended sources, like the Sun, off-axis photons at certain incident angles can reflect on only one mirror and still reach the focal plane, generating a pattern of single-bounce photons, or ‘ghost rays’ that can limit the sensitivity of the observation of focused X-rays. Understanding and cutting down the ghost rays on the FOXSI optics will maximize the instrument’s sensitivity of the solar faintest sources for future flights. We present an analysis of the FOXSI ghost rays based on ray-tracing simulations, as well as the effectiveness of different physical strategies to reduce them.

  7. Multi-distance diffuse optical spectroscopy with a single optode via hypotrochoidal scanning.

    PubMed

    Applegate, Matthew B; Roblyer, Darren

    2018-02-15

    Frequency-domain diffuse optical spectroscopy (FD-DOS) is an established technique capable of determining optical properties and chromophore concentrations in biological tissue. Most FD-DOS systems use either manually positioned, handheld probes or complex arrays of source and detector fibers to acquire data from many tissue locations, allowing for the generation of 2D or 3D maps of tissue. Here, we present a new method to rapidly acquire a wide range of source-detector (SD) separations by mechanically scanning a single SD pair. The source and detector fibers are mounted on a scan head that traces a hypotrochoidal pattern over the sample that, when coupled with a high-speed FD-DOS system, enables the rapid collection of dozens of SD separations for depth-resolved imaging. We demonstrate that this system has an average error of 4±2.6% in absorption and 2±1.8% in scattering across all SD separations. Additionally, by linearly translating the device, the size and location of an absorbing inhomogeneity can be determined through the generation of B-scan images in a manner conceptually analogous to ultrasound imaging. This work demonstrates the potential of single optode diffuse optical scanning for depth resolved visualization of heterogeneous biological tissues at near real-time rates.

  8. Methods for Reducing Singly Reflected Rays on the Wolter-I Focusing Figures of the FOXSI Rocket Experiment

    NASA Technical Reports Server (NTRS)

    Buitrago-Casas, Juan Camilo; Glesener, Lindsay; Christe, Steven; Elsner, Ronald; Ramsey, Brian; Courtade, Sasha; Ishikawa, Shin-nosuke; Narukage, Noriyuki; Vievering, Juliana; Subramania, Athiray; hide

    2017-01-01

    In high energy solar astrophysics, imaging hard X-rays by direct focusing offers higher dynamic range and greater sensitivity compared to past techniques that used indirect imaging. The Focusing Optics X-ray Solar Imager (FOXSI) is a sounding rocket payload which uses seven sets of nested Wolter-I figured mirrors that, together with seven high-sensitivity semiconductor detectors, observes the Sun in hard X-rays by direct focusing. The FOXSI rocket has successfully flown twice and is funded to fly a third time in Summer 2018. The Wolter-I geometry consists of two consecutive mirrors, one paraboloid, and one hyperboloid, that reflect photons at grazing angles. Correctly focused X-rays reflect twice, once per mirror segment. For extended sources, like the Sun, off-axis photons at certain incident angles can reflect on only one mirror and still reach the focal plane, generating a pattern of single-bounce photons that can limit the sensitivity of the observation of faint focused X-rays. Understanding and cutting down the singly reflected rays on the FOXSI optics will maximize the instrument's sensitivity of the faintest solar sources for future flights. We present an analysis of the FOXSI singly reflected rays based on ray-tracing simulations, as well as the effectiveness of different physical strategies to reduce them.

  9. Relationship between extreme ultraviolet microflares and small-scale magnetic fields in the quiet Sun

    NASA Astrophysics Data System (ADS)

    Jiang, Fayu; Zhang, Jun; Yang, Shuhong

    2016-04-01

    Microflares are small dynamic signatures observed in X-ray and extreme-ultraviolet channels. Because of their impulsive emission enhancements and wide distribution, they are thought to be closely related to coronal heating. By using the high resolution 171 Å images from the Atmospheric Imaging Assembly and the lines-of-sight magnetograms obtained by the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory, we trace 10794 microflares in a quiet region near the disk center with a field of view of 960''× 1068'' during 24 hr. The microflares have an occurrence rate of 4.4 × 103 hr-1 extrapolated over the whole Sun. Their average brightness, size, and lifetime are 1.7 I0 (of the quiet Sun), 9.6 Mm2, and 3.6 min, respectively. There exists a mutual positive correlation between the microflares' brightness, area and lifetime. In general, the microflares distribute uniformly across the solar disk, but form network patterns locally, which are similar to and matched with the magnetic network structures. Typical cases show that the microflares prefer to occur in magnetic cancellation regions of network boundaries. We roughly calculate the upper limit of energy flux supplied by the microflares and find that the result is still a factor of ˜15 below the coronal heating requirement.

  10. Relationship between extreme ultraviolet microflares and small-scale magnetic fields in the quiet Sun

    NASA Astrophysics Data System (ADS)

    Jiang, Fayu; Zhang, Jun; Yang, Shuhong

    2015-06-01

    Microflares are small dynamic signatures observed in X-ray and extreme-ultraviolet channels. Because of their impulsive emission enhancements and wide distribution, they are thought to be closely related to coronal heating. By using the high-resolution 171 Å images from the Atmospheric Imaging Assembly and the lines-of-sight magnetograms obtained by the Helioseismic and Magnetic Imager on board the Solar Dynamics Observatory, we trace 10794 microflares in a quiet region near the disk center with a field of view of 960″ × 1068″ during 24 hr. The microflares have an occurrence rate of 4.4 × 103 hr-1 extrapolated over the whole Sun. Their average brightness, size, and lifetime are 1.7I0 (of the quiet Sun), 9.6 Mm2, and 3.6 min, respectively. There exists a mutual positive correlation between the microflares' brightness, area, and lifetime. In general, the microflares distribute uniformly across the solar disk, but form network patterns locally, which are similar to and matched with the magnetic network structures. Typical cases show that the microflares prefer to occur in magnetic cancellation regions of network boundaries. We roughly calculate the upper limit of energy flux supplied by the microflares and find that the result is still a factor of ˜ 15 below the coronal heating requirement.

  11. Tip-Enhanced Raman Nanographs: Mapping Topography and Local Electric Fields

    DOE PAGES

    El-Khoury, Patrick Z.; Gong, Yu; Abellan, Patricia; ...

    2015-03-05

    We report tip-enhanced Raman scattering experiments in which topographic and local electric field images are recorded simultaneously. We employ a Raman-active 4,4’-dimercaptostilbene (DMS)-coated gold tip of an atomic force microscope to map the topography and image electric fields localized at nanometric (20 and 5 nm-wide) slits lithographically etched in silver. Bi-modal imaging is feasible by virtue of the recorded scanning probe position-dependent frequency-resolved optical response, which can be sub-divided into two components. The first is a 500-2250 cm-1 Raman-shifted signal, characteristic of DMS. The molecular response reports on topography through intensity contrast in the absence/presence of a plasmonic junction formedmore » between the scanning probe and patterned silver surface. Here, we demonstrate that sub-15 nm spatial resolution is attainable using a 30 nm DMS-coated gold tip. The second response consists of two correlated sub-500 cm-1 signals arising from mirror-like reflections of (i) the incident laser, and (ii) the Raman scattered response of an underlying glass support (at 100-500 cm-1) off the gold tip. We show that both the low-wavenumber signals trace the local electric fields in the vicinity of the nanometric slits.« less

  12. Stand-off imaging Raman spectroscopy for forensic analysis of post-blast scenes: trace detection of ammonium nitrate and 2,4,6-trinitrotoluene

    NASA Astrophysics Data System (ADS)

    Ceco, Ema; Önnerud, Hans; Menning, Dennis; Gilljam, John L.; Bââth, Petra; Östmark, Henric

    2014-05-01

    The following paper presents a realistic forensic capability test of an imaging Raman spectroscopy based demonstrator system, developed at FOI, the Swedish Defence Research Agency. The system uses a 532 nm laser to irradiate a surface of 25×25mm. The backscattered radiation from the surface is collected by an 8" telescope with subsequent optical system, and is finally imaged onto an ICCD camera. We present here an explosives trace analysis study of samples collected from a realistic scenario after a detonation. A left-behind 5 kg IED, based on ammonium nitrate with a TNT (2,4,6-trinitrotoluene) booster, was detonated in a plastic garbage bin. Aluminum sample plates were mounted vertically on a holder approximately 6 m from the point of detonation. Minutes after the detonation, the samples were analyzed with stand-off imaging Raman spectroscopy from a distance of 10 m. Trace amounts could be detected from the secondary explosive (ammonium nitrate with an analysis time of 1 min. Measurement results also indicated detection of residues from the booster (TNT). The sample plates were subsequently swabbed and analyzed with HPLC and GC-MS analyses to confirm the results from the stand-off imaging Raman system. The presented findings indicate that it is possible to determine the type of explosive used in an IED from a distance, within minutes after the attack, and without tampering with physical evidence at the crime scene.

  13. Romantic Relationship Patterns in Young Adulthood and Their Developmental Antecedents

    ERIC Educational Resources Information Center

    Rauer, Amy J.; Pettit, Gregory S.; Lansford, Jennifer E.; Bates, John E.; Dodge, Kenneth A.

    2013-01-01

    The delayed entry into marriage that characterizes modern society raises questions about young adults' romantic relationship trajectories and whether patterns found to characterize adolescent romantic relationships persist into young adulthood. The current study traced developmental transitions into and out of romantic relationships from age…

  14. Interferometric imaging of crustal structure from wide-angle multicomponent OBS-airgun data

    NASA Astrophysics Data System (ADS)

    Shiraishi, K.; Fujie, G.; Sato, T.; Abe, S.; Asakawa, E.; Kodaira, S.

    2015-12-01

    In wide-angle seismic surveys with ocean bottom seismograph (OBS) and airgun, surface-related multiple reflections and upgoing P-to-S conversions are frequently observed. We applied two interferometric imaging methods to the multicomponent OBS data in order to highly utilize seismic signals for subsurface imaging.First, seismic interferometry (SI) is applied to vertical component in order to obtain reflection profile with multiple reflections. By correlating seismic traces on common receiver records, pseudo seismic data are generated with virtual sources and receivers located on all original shot positions. We adopt the deconvolution SI because source and receiver spectra can be canceled by spectral division. Consequently, gapless reflection images from just below the seafloor to the deeper are obtained.Second, receiver function (RF) imaging is applied to multicomponent OBS data in order to image P-to-S conversion boundary. Though RF is commonly applied to teleseismic data, our purpose is to extract upgoing PS converted waves from wide-angle OBS data. The RF traces are synthesized by deconvolution of radial and vertical components at same OBS location for each shot. Final section obtained by stacking RF traces shows the PS conversion boundaries beneath OBSs. Then, Vp/Vs ratio can be estimated by comparing one-way traveltime delay with two-way traveltime of P wave reflections.We applied these methods to field data sets; (a) 175 km survey in Nankai trough subduction zone using 71 OBSs with from 1 km to 10 km intervals and 878 shots with 200 m interval, and (b) 237 km survey in northwest pacific ocean with almost flat layers before subduction using 25 OBSs with 6km interval and 1188 shots with 200 m interval. In our study, SI imaging with multiple reflections is highly applicable to OBS data even in a complex geological setting, and PS conversion boundary is well imaged by RF imaging and Vp/Vs ratio distribution in sediment is estimated in case of simple structure.

  15. The role of the seagrass Posidonia oceanica in the cycling of trace elements

    NASA Astrophysics Data System (ADS)

    Sanz-Lázaro, C.; Malea, P.; Apostolaki, E. T.; Kalantzi, I.; Marín, A.; Karakassis, I.

    2012-03-01

    The aim of this work was to study the role of the seagrass Posidonia oceanica on the cycling of a wide set of trace elements (Ag, As, Ba, Bi, Cd, Co, Cr, Cs, Cu, Fe, Ga, Li, Mn, Ni, Pb, Rb, Sr, Tl, V and Zn). We measured the concentration of these trace elements in the different compartments of P. oceanica (leaves, rhizomes, roots and epibiota) in a non-polluted seagrass meadow representative of the Mediterranean and calculated the annual budget from a mass balance. We provide novel data on accumulation dynamics of many trace elements in P. oceanica compartments and demonstrate that trace element accumulation patterns are mainly determined by plant compartment rather than by temporal variability. Epibiota was the compartment which showed the greatest concentrations for most trace elements. Thus, they constitute a key compartment when estimating trace element transfer to higher trophic levels by P. oceanica. For most trace elements, translocation seemed to be low and acropetal. Zn, Cd, Sr and Rb were the trace elements that showed the highest release rate through decomposition of plant detritus, while Cs, Tl and Bi the lowest. P. oceanica acts as a sink of potentially toxic trace elements (Ni, Cr, As and Ag), which can be sequestered, decreasing their bioavailability. P. oceanica may have a relevant role in the cycling of trace elements in the Mediterranean.

  16. The role of the seagrass Posidonia oceanica in the cycling of trace elements

    NASA Astrophysics Data System (ADS)

    Sanz-Lázaro, C.; Malea, P.; Apostolaki, E. T.; Kalantzi, I.; Marín, A.; Karakassis, I.

    2012-07-01

    The aim of this study was to investigate the role of the seagrass Posidonia oceanica on the cycling of a wide set of trace elements (Ag, As, Ba, Bi, Cd, Co, Cr, Cs, Cu, Fe, Ga, Li, Mn, Ni, Pb, Rb, Sr, Tl, V and Zn). We measured the concentration of these trace elements in different compartments of P. oceanica (leaves, rhizomes, roots and epiphytes) in a non-polluted seagrass meadow representative of the Mediterranean and calculated the annual budget from a mass balance. We provide novel data on accumulation dynamics of many trace elements in P. oceanica compartments and demonstrate that trace element accumulation patterns are mainly determined by plant compartment rather than by temporal variability. Epiphytes were the compartment, which showed the greatest concentrations for most trace elements. Thus, they constitute a key compartment when estimating trace element transfer to higher trophic levels by P. oceanica. Trace element translocation in P. oceanica seemed to be low and acropetal in most cases. Zn, Cd, Sr and Rb were the trace elements that showed the highest release rate through decomposition of plant detritus, while Cs, Tl and Bi showed the lowest. P. oceanica acts as a sink of potentially toxic trace elements (Ni, Cr, As and Ag), which can be sequestered, decreasing their bioavailability. P. oceanica may have a relevant role in the cycling of trace elements in the Mediterranean.

  17. Laser ablation ICP-MS profiling and semiquantitative determination of trace element concentrations in desert tortoise shells: documenting the uptake of elemental toxicants.

    PubMed

    Seltzer, Michaeld; Berry, Kristinh

    2005-03-01

    The outer keratin layer (scute) of desert tortoise shells consists of incrementally grown laminae in which various bioaccumulated trace elements are sequestered during scute deposition. Laser ablation ICP-MS examination of laminae in scutes of dead tortoises revealed patterns of trace elemental distribution from which the chronology of elemental uptake can be inferred. These patterns may be of pathologic significance in the case of elemental toxicants such as arsenic, which has been linked to both shell and respiratory diseases. Laser ablation transects, performed along the lateral surfaces of sectioned scutes, offered the most successful means of avoiding exogenous contamination that was present on the scute exterior. Semiquantitative determination of elemental concentrations was achieved using sulfur, a keratin matrix element, as an internal standard. The results presented here highlight the potential of laser ablation ICP-MS as a diagnostic tool for investigating toxic element uptake as it pertains to tortoise morbidity and mortality.

  18. Laser ablation ICP-MS profiling and semiquantitative determination of trace element concentrations in desert tortoise shells: Documenting the uptake of elemental toxicants

    USGS Publications Warehouse

    Seltzer, M.D.; Berry, K.H.

    2005-01-01

    The outer keratin layer (scute) of desert tortoise shells consists of incrementally grown laminae in which various bioaccumulated trace elements are sequestered during scute deposition. Laser ablation ICP-MS examination of laminae in scutes of dead tortoises revealed patterns of trace elemental distribution from which the chronology of elemental uptake can be inferred. These patterns may be of pathologic significance in the case of elemental toxicants such as arsenic, which has been linked to both shell and respiratory diseases. Laser ablation transects, performed along the lateral surfaces of sectioned scutes, offered the most successful means of avoiding exogenous contamination that was present on the scute exterior. Semiquantitative determination of elemental concentrations was achieved using sulfur, a keratin matrix element, as an internal standard. The results presented here highlight the potential of laser ablation ICP-MS as a diagnostic tool for investigating toxic element uptake as it pertains to tortoise morbidity and mortality.

  19. Status of GeoTASO Trace Gas Data Analysis for the KORUS-AQ Campaign

    NASA Astrophysics Data System (ADS)

    Janz, S. J.; Nowlan, C. R.; Lamsal, L. N.; Kowalewski, M. G.; Judd, L. M.; Wang, J.

    2017-12-01

    The Geostationary Trace gas and Aerosol Sensor Optimization (GeoTASO) instrument measures spectrally resolved backscattered solar radiation at high spatial resolution. The instrument completed 30 sorties on board the NASA LaRC UC-12 aircraft during the KORUS-AQ deployment in May-June of 2016. GeoTASO collects spatially resolved spectra with sufficient sensitivity to retrieve column amounts of the trace gas molecules NO2, SO2, H2CO, O3, and C2H2O2 as well as aerosol products. Typical product retrievals are done in 250 m2 bins with multiple overpasses of key ground sites, allowing for detailed spatio-temporal analysis. Flight patterns consisted of both contiguous overlapping grid patterns to simulate satellite observational strategies in support of future geostationary satellite algorithm development, and "race-track" sampling to perform calibration and validation with the in-situ DC-8 platform as well as ground based assets. We will summarize the status of the radiance data set as well as ongoing analysis from our co-Investigators.

  20. Fluorescent discrimination between traces of chemical warfare agents and their mimics.

    PubMed

    Díaz de Greñu, Borja; Moreno, Daniel; Torroba, Tomás; Berg, Alexander; Gunnars, Johan; Nilsson, Tobias; Nyman, Rasmus; Persson, Milton; Pettersson, Johannes; Eklind, Ida; Wästerby, Pär

    2014-03-19

    An array of fluorogenic probes is able to discriminate between nerve agents, sarin, soman, tabun, VX and their mimics, in water or organic solvent, by qualitative fluorescence patterns and quantitative multivariate analysis, thus making the system suitable for the in-the-field detection of traces of chemical warfare agents as well as to differentiate between the real nerve agents and other related compounds.

  1. Comparison between ray-tracing and physical optics for the computation of light absorption in capillaries--the influence of diffraction and interference.

    PubMed

    Qin, Yuan; Michalowski, Andreas; Weber, Rudolf; Yang, Sen; Graf, Thomas; Ni, Xiaowu

    2012-11-19

    Ray-tracing is the commonly used technique to calculate the absorption of light in laser deep-penetration welding or drilling. Since new lasers with high brilliance enable small capillaries with high aspect ratios, diffraction might become important. To examine the applicability of the ray-tracing method, we studied the total absorptance and the absorbed intensity of polarized beams in several capillary geometries. The ray-tracing results are compared with more sophisticated simulations based on physical optics. The comparison shows that the simple ray-tracing is applicable to calculate the total absorptance in triangular grooves and in conical capillaries but not in rectangular grooves. To calculate the distribution of the absorbed intensity ray-tracing fails due to the neglected interference, diffraction, and the effects of beam propagation in the capillaries with sub-wavelength diameter. If diffraction is avoided e.g. with beams smaller than the entrance pupil of the capillary or with very shallow capillaries, the distribution of the absorbed intensity calculated by ray-tracing corresponds to the local average of the interference pattern found by physical optics.

  2. Middle Atmosphere Program. Handbook for MAP. Volume 31: Reference models of trace species for the COSPAR international reference atmosphere

    NASA Technical Reports Server (NTRS)

    Keating, G. M. (Editor)

    1989-01-01

    A set of preliminary reference atmosphere models of significant trace species which play important roles in controlling the chemistry, radiation budget, and circulation patterns of the atmosphere were produced. These models of trace species distributions are considered to be reference models rather than standard models; thus, it was not crucial that they be correct in an absolute sense. These reference models can serve as a means of comparison between individual observations, as a first guess in inversion algorithms, and as an approximate representation of observations for comparison to theoretical calculations.

  3. Investigating the relationship between peat biogeochemistry and above-ground plant phenology with remote sensing along a gradient of permafrost thaw.

    NASA Astrophysics Data System (ADS)

    Garnello, A.; Dye, D. G.; Bogle, R.; Hough, M.; Raab, N.; Dominguez, S.; Rich, V. I.; Crill, P. M.; Saleska, S. R.

    2016-12-01

    Global climate models predict a 50% - 85% decrease in permafrost area in northern regions by 2100 due to increased temperature and precipitation variability, potentially releasing large stores of carbon as greenhouse gases (GHG) due to microbial activity. Linking belowground biogeochemical processes with observable above ground plant dynamics would greatly increase the ability to track and model GHG emissions from permafrost thaw, but current research has yet to satisfactorily develop this link. We hypothesized that seasonal patterns in peatland biogeochemistry manifests itself as observable plant phenology due to the tight coupling resulting from plant-microbial interactions. We tested this by using an automated, tower-based camera to acquire daily composite (red, green, blue) and near infrared (NIR) images of a thawing permafrost peatland site near Abisko, Sweden. The images encompassed a range of exposures which were merged into high-dynamic-range images, a novel application to remote sensing of plant phenology. The 2016 growing season camera images are accompanied by mid-to-late season CH4 and CO2 fluxes measured from soil collars, and by early-mid-late season peat core samples of the composition of microbial communities and key metabolic genes, and of the organic matter and trace gas composition of peat porewater. Additionally, nearby automated gas flux chambers measured sub-hourly fluxes of CO2 and CH4 from the peat, which will also be incorporated into analysis of relationships between seasonal camera-derived vegetation indices and gas fluxes from habitats with different vegetation types. While remote sensing is a proven method in observing plant phenology, this technology has yet to be combined with soil biogeochemical and microbial community data in regions of permafrost thaw. Establishing a high resolution phenology monitoring system linked to soil biogeochemical processes in subarctic peatlands will advance the understanding of how observable patterns in plant phenology can be used to monitor permafrost thaw and ecosystem carbon cycling.

  4. Image pattern recognition supporting interactive analysis and graphical visualization

    NASA Technical Reports Server (NTRS)

    Coggins, James M.

    1992-01-01

    Image Pattern Recognition attempts to infer properties of the world from image data. Such capabilities are crucial for making measurements from satellite or telescope images related to Earth and space science problems. Such measurements can be the required product itself, or the measurements can be used as input to a computer graphics system for visualization purposes. At present, the field of image pattern recognition lacks a unified scientific structure for developing and evaluating image pattern recognition applications. The overall goal of this project is to begin developing such a structure. This report summarizes results of a 3-year research effort in image pattern recognition addressing the following three principal aims: (1) to create a software foundation for the research and identify image pattern recognition problems in Earth and space science; (2) to develop image measurement operations based on Artificial Visual Systems; and (3) to develop multiscale image descriptions for use in interactive image analysis.

  5. Exploring Potential of Crowdsourced Geographic Information in Studies of Active Travel and Health: Strava Data and Cycling Behaviour

    NASA Astrophysics Data System (ADS)

    Sun, Y.

    2017-09-01

    In development of sustainable transportation and green city, policymakers encourage people to commute by cycling and walking instead of motor vehicles in cities. One the one hand, cycling and walking enables decrease in air pollution emissions. On the other hand, cycling and walking offer health benefits by increasing people's physical activity. Earlier studies on investigating spatial patterns of active travel (cycling and walking) are limited by lacks of spatially fine-grained data. In recent years, with the development of information and communications technology, GPS-enabled devices are popular and portable. With smart phones or smart watches, people are able to record their cycling or walking GPS traces when they are moving. A large number of cyclists and pedestrians upload their GPS traces to sport social media to share their historical traces with other people. Those sport social media thus become a potential source for spatially fine-grained cycling and walking data. Very recently, Strava Metro offer aggregated cycling and walking data with high spatial granularity. Strava Metro aggregated a large amount of cycling and walking GPS traces of Strava users to streets or intersections across a city. Accordingly, as a kind of crowdsourced geographic information, the aggregated data is useful for investigating spatial patterns of cycling and walking activities, and thus is of high potential in understanding cycling or walking behavior at a large spatial scale. This study is a start of demonstrating usefulness of Strava Metro data for exploring cycling or walking patterns at a large scale.

  6. Enhanced identification of trace element fingerprint of prehistoric pigments by PIXE mapping

    NASA Astrophysics Data System (ADS)

    Lebon, M.; Pichon, L.; Beck, L.

    2018-02-01

    The elemental composition of Fe rich rocks used as pigment during prehistoric periods can provide valuable information about the type of material used and their geological origin. However, these materials present several analytical constraints since their patrimonial value involve using non-invasive techniques maintaining a high sensitivity of the detection and the quantification of trace elements. Micro-beam techniques also require to take into account the heterogeneity of these geomaterials from the macroscopic to microscopic scales. Several previous studies have demonstrated that PIXE analysis satisfies these analytical conditions. However, application of micro-PIXE analysis is still complex when thin and discontinuous layer of pigment is deposed on the surface of other materials such as rocks or bones. In such case, PIXE imaging could improve the ability to take into account the high heterogeneity of such archaeological objects. In study, we used PIXE imaging system developed at the NewAGLAE facility in order to visualize distribution of elements associated with iron-rich pigment phase. The results obtained show that PIXE maps can improve the identification of the main trace elements specific to the iron mineral phase. By grouping pixels of iron-rich areas and performing quantitative treatment, it was possible to reveal additional trace elements associated to pigment. This study highlights the contribution of PIXE imaging to the identification of elements associated with mineral phases of interest and to use them as proxies to discriminate different geological materials used in archaeological context.

  7. Minimising back reflections from the common path objective in a fundus camera

    NASA Astrophysics Data System (ADS)

    Swat, A.

    2016-11-01

    Eliminating back reflections is critical in the design of a fundus camera with internal illuminating system. As there is very little light reflected from the retina, even excellent antireflective coatings are not sufficient suppression of ghost reflections, therefore the number of surfaces in the common optics in illuminating and imaging paths shall be minimised. Typically a single aspheric objective is used. In the paper an alternative approach, an objective with all spherical surfaces, is presented. As more surfaces are required, more sophisticated method is needed to get rid of back reflections. Typically back reflections analysis, comprise treating subsequent objective surfaces as mirrors, and reflections from the objective surfaces are traced back through the imaging path. This approach can be applied in both sequential and nonsequential ray tracing. It is good enough for system check but not very suitable for early optimisation process in the optical system design phase. There are also available standard ghost control merit function operands in the sequential ray-trace, for example in Zemax system, but these don't allow back ray-trace in an alternative optical path, illumination vs. imaging. What is proposed in the paper, is a complete method to incorporate ghost reflected energy into the raytracing system merit function for sequential mode which is more efficient in optimisation process. Although developed for the purpose of specific case of fundus camera, the method might be utilised in a wider range of applications where ghost control is critical.

  8. About possibility of temperature trace observing on a human skin through clothes by using computer processing of IR image

    NASA Astrophysics Data System (ADS)

    Trofimov, Vyacheslav A.; Trofimov, Vladislav V.; Shestakov, Ivan L.; Blednov, Roman G.

    2017-05-01

    One of urgent security problems is a detection of objects placed inside the human body. Obviously, for safety reasons one cannot use X-rays for such object detection widely and often. For this purpose, we propose to use THz camera and IR camera. Below we continue a possibility of IR camera using for a detection of temperature trace on a human body. In contrast to passive THz camera using, the IR camera does not allow to see very pronounced the object under clothing. Of course, this is a big disadvantage for a security problem solution based on the IR camera using. To find possible ways for this disadvantage overcoming we make some experiments with IR camera, produced by FLIR Company and develop novel approach for computer processing of images captured by IR camera. It allows us to increase a temperature resolution of IR camera as well as human year effective susceptibility enhancing. As a consequence of this, a possibility for seeing of a human body temperature changing through clothing appears. We analyze IR images of a person, which drinks water and eats chocolate. We follow a temperature trace on human body skin, caused by changing of temperature inside the human body. Some experiments are made with observing of temperature trace from objects placed behind think overall. Demonstrated results are very important for the detection of forbidden objects, concealed inside the human body, by using non-destructive control without using X-rays.

  9. Mobile Platforms for Continuous Spatial Measurements of Urban Trace Gases and Criteria Pollutants

    NASA Astrophysics Data System (ADS)

    Fasoli, B.; Mitchell, L.; Bares, R.; Crosman, E.; Bush, S. E.; Horel, J.; Lin, J. C.; Bowling, D. R.; Ehleringer, J. R.

    2015-12-01

    Surface-based observations of atmospheric trace gases and criteria pollutants provide critical data on how emissions and pollutant concentrations vary over time. However, traditional stationary measurement sites only quantify concentrations at a single point in space, limiting our ability to understand spatial patterns. Using trace gas instrumentation capable of making continuous high-frequency (~1s) measurements, we have developed mobile platforms to complement stationary observation sites in order to better constrain the heterogeneity and complexities of urban emissions. These compact trace gas and criteria pollutant measurement systems are capable of precisely measuring CO2, CH4 PM2.5, O3, NOx, and several meteorological parameters on TRAX, Salt Lake City's light-rail system, and in a van-based mobile laboratory. Using case study observations, we discuss mobile measurement methodologies and the practical applications of mobile trace gas sampling platforms.

  10. Automatic extraction of disease-specific features from Doppler images

    NASA Astrophysics Data System (ADS)

    Negahdar, Mohammadreza; Moradi, Mehdi; Parajuli, Nripesh; Syeda-Mahmood, Tanveer

    2017-03-01

    Flow Doppler imaging is widely used by clinicians to detect diseases of the valves. In particular, continuous wave (CW) Doppler mode scan is routinely done during echocardiography and shows Doppler signal traces over multiple heart cycles. Traditionally, echocardiographers have manually traced such velocity envelopes to extract measurements such as decay time and pressure gradient which are then matched to normal and abnormal values based on clinical guidelines. In this paper, we present a fully automatic approach to deriving these measurements for aortic stenosis retrospectively from echocardiography videos. Comparison of our method with measurements made by echocardiographers shows large agreement as well as identification of new cases missed by echocardiographers.

  11. KSC-2013-2485

    NASA Image and Video Library

    2013-05-29

    VANDENBERG AFB, Calif. - An Orbital Sciences Pegasus XL rocket undergoes launch preparations inside a hangar at Vandenberg Air Force Base for NASA's IRIS mission, short for Interface Region Imaging Spectrograph. Scheduled for launch from Vandenberg June 26, IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: NASA/Randy Beaudoin

  12. KSC-2013-2486

    NASA Image and Video Library

    2013-05-29

    VANDENBERG AFB, Calif. - An Orbital Sciences Pegasus XL rocket undergoes launch preparations inside a hangar at Vandenberg Air Force Base for NASA's IRIS mission, short for Interface Region Imaging Spectrograph. Scheduled for launch from Vandenberg June 26, IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: NASA/Randy Beaudoin

  13. Molray--a web interface between O and the POV-Ray ray tracer.

    PubMed

    Harris, M; Jones, T A

    2001-08-01

    A publicly available web-based interface is presented for producing high-quality ray-traced images and movies from the molecular-modelling program O [Jones et al. (1991), Acta Cryst. A47, 110-119]. The interface allows the user to select O-plot files and set parameters to create standard input files for the popular ray-tracing renderer POV-Ray, which can then produce publication-quality still images or simple movies. To ensure ease of use, we have made this service available to the O user community via the World Wide Web. The public Molray server is available at http://xray.bmc.uu.se/molray.

  14. Estimation of pseudo-2D shear-velocity section by inversion of high frequency surface waves

    USGS Publications Warehouse

    Luo, Y.; Liu, J.; Xia, J.; Xu, Y.; Liu, Q.

    2006-01-01

    A scheme to generate pseudo-2D shear-velocity sections with high horizontal resolution and low field cost by inversion of high frequency surface waves is presented. It contains six steps. The key step is the joint method of crossed correlation and phase shift scanning. This joint method chooses only two traces to generate image of dispersion curve. For Rayleigh-wave dispersion is most important for estimation of near-surface shear-wave velocity, it can effectively obtain reliable images of dispersion curves with a couple of traces. The result of a synthetic example shows the feasibility of this scheme. ?? 2005 Society of Exploration Geophysicists.

  15. Stand-off detection of trace explosives by infrared photothermal imaging

    NASA Astrophysics Data System (ADS)

    Papantonakis, Michael R.; Kendziora, Chris; Furstenberg, Robert; Stepnowski, Stanley V.; Rake, Matthew; Stepnowski, Jennifer; McGill, R. Andrew

    2009-05-01

    We have developed a technique for the stand-off detection of trace explosives using infrared photothermal imaging. In this approach, infrared quantum cascade lasers tuned to strong vibrational absorption bands of the explosive particles illuminate a surface of interest, preferentially heating the explosives material. An infrared focal plane array is used to image the surface and detect a small increase in the thermal intensity upon laser illumination. We have demonstrated the technique using TNT and RDX residues at several meters of stand-off distance under laboratory conditions, while operating the lasers below the eye-safe intensity limit. Sensitivity to explosives traces as small as a single grain (~100 ng) of TNT has been demonstrated using an uncooled bolometer array. We show the viability of this approach on a variety of surfaces which transmit, reflect or absorb the infrared laser light and have a range of thermal conductivities. By varying the incident wavelength slightly, we demonstrate selectivity between TNT and RDX. Using a sequence of lasers at different wavelengths, we increase both sensitivity and selectivity while reducing the false alarm rate. At higher energy levels we also show it is possible to generate vapor from solid materials with inherently low vapor pressures.

  16. CORFIG- CORRECTOR SURFACE DESIGN SOFTWARE

    NASA Technical Reports Server (NTRS)

    Dantzler, A.

    1994-01-01

    Corrector Surface Design Software, CORFIG, calculates the optimum figure of a corrector surface for an optical system based on real ray traces. CORFIG generates the corrector figure in the form of a spline data point table and/or a list of polynomial coefficients. The number of spline data points as well as the number of coefficients is user specified. First, the optical system's parameters (thickness, radii of curvature, etc.) are entered. CORFIG will trace the outermost axial real ray through the uncorrected system to determine approximate radial limits for all rays. Then, several real rays are traced backwards through the system from the image to the surface that originally followed the object, within these radial limits. At this first surface, the local curvature is adjusted on a small scale to direct the rays toward the object, thus removing any accumulated aberrations. For each ray traced, this adjustment will be different, so that at the end of this process the resultant surface is made up of many local curvatures. The equations that describe these local surfaces, expressed as high order polynomials, are then solved simultaneously to yield the final surface figure, from which data points are extracted. Finally, a spline table or list of polynomial coefficients is extracted from these data points. CORFIG is intended to be used in the late stages of optical design. The system's design must have at least a good paraxial foundation. Preferably, the design should be at a stage where traditional methods of Seidel aberration correction will not bring about the required image spot size specification. CORFIG will read the system parameters of such a design and calculate the optimum figure for the first surface such that all of the original parameters remain unchanged. Depending upon the system, CORFIG can reduce the RMS image spot radius by a factor of 5 to 25. The original parameters (magnification, back focal length, etc.) are maintained because all rays upon which the corrector figure is based are traced within the bounds of the original system's outermost ray. For this reason the original system must have a certain degree of integrity. CORFIG optimizes the corrector surface figure for on-axis images at a single wavelength only. However, it has been demonstrated many times that CORFIG's method also significantly improves the quality of field images and images formed from wavelengths other than the center wavelength. CORFIG is written completely in VAX FORTRAN. It has been implemented on a DEC VAX series computer under VMS with a central memory requirement of 55 K bytes. This program was developed in 1986.

  17. Jupiter's Northern Hemisphere in True Color (Time Set 3)

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Mosaic of Jupiter's northern hemisphere between 10 and 50 degrees latitude. Jupiter's atmospheric circulation is dominated by alternating eastward and westward jets from equatorial to polar latitudes. The direction and speed of these jets in part determine the color and texture of the clouds seen in this mosaic. Also visible are several other common Jovian cloud features, including large white ovals, bright spots, dark spots, interacting vortices, and turbulent chaotic systems. The north-south dimension of each of the two interacting vortices in the upper half of the mosaic is about 3500 kilometers. This mosaic combines the violet (410 nanometers) and near infrared continuum (756 nanometers) filter images to create a mosaic similar to how Jupiter would appear to human eyes. Differences in coloration are due to the composition and abundance of trace chemicals in Jupiter's atmosphere.

    North is at the top. The images are projected on a sphere, with features being foreshortened towards the north. The planetary limb runs along the right edge of the mosaic. Cloud patterns appear foreshortened as they approach the limb. The smallest resolved features are tens of kilometers in size. These images were taken on April 3, 1997, at a range of 1.4 million kilometers by the Solid State Imaging system (CCD) on NASA's Galileo spacecraft.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov. Background information and educational context for the images can be found at URL http://www.jpl.nasa.gov/galileo/sepo

  18. Multiscale Analysis of Solar Image Data

    NASA Astrophysics Data System (ADS)

    Young, C. A.; Myers, D. C.

    2001-12-01

    It is often said that the blessing and curse of solar physics is that there is too much data. Solar missions such as Yohkoh, SOHO and TRACE have shown us the Sun with amazing clarity but have also cursed us with an increased amount of higher complexity data than previous missions. We have improved our view of the Sun yet we have not improved our analysis techniques. The standard techniques used for analysis of solar images generally consist of observing the evolution of features in a sequence of byte scaled images or a sequence of byte scaled difference images. The determination of features and structures in the images are done qualitatively by the observer. There is little quantitative and objective analysis done with these images. Many advances in image processing techniques have occured in the past decade. Many of these methods are possibly suited for solar image analysis. Multiscale/Multiresolution methods are perhaps the most promising. These methods have been used to formulate the human ability to view and comprehend phenomena on different scales. So these techniques could be used to quantitify the imaging processing done by the observers eyes and brains. In this work we present a preliminary analysis of multiscale techniques applied to solar image data. Specifically, we explore the use of the 2-d wavelet transform and related transforms with EIT, LASCO and TRACE images. This work was supported by NASA contract NAS5-00220.

  19. Multiscale, multispectral and multitemporal satellite data to identify archaeological remains in the archaeological area of Tiwanaku (Bolivia)

    NASA Astrophysics Data System (ADS)

    Masini, Nicola; Lasaponara, Rosa

    2015-04-01

    The aim of this paper is to investigate the cultural landscape of the archaeological area of Tiwanaku (Bolivia) using multiscale, multispectral and multitemporal satellite data. Geospatial analysis techniques were applied to the satellite data sets in order to enhance and map traces of past human activities and perform a spatial characterization of environmental and cultural patterns. In particular, in the Tiwanaku area, the approach based on local indicators of spatial autocorrelation (LISA) applied to ASTER data allowed us to identify traces of a possible ancient hydrographic network with a clear spatial relation with the well-known moat surrounding the core of the monumental area. The same approach applied to QuickBird data, allowed us to identify numerous traces of archaeological interest, in Mollo Kontu mound, less investigated than the monumental area. Some of these traces were in perfect accordance with the results of independent studies, other were completely unknown. As a whole, the detected features, composing a geometric pattern with roughly North-South orientation, closely match those of the other residential contexts at Tiwanaku. These new insights, captured from multitemporal ASTER and QuickBird data processing, suggested new questions on the ancient landscape and provided important information for planning future field surveys and archaeogeophyical investigations. Reference [1] Lasaponara R., Masini N. 2014. Beyond modern landscape features: New insights in thearchaeological area of Tiwanaku in Bolivia from satellite data. International Journal of Applied Earth Observation and Geoinformation, 26, 464-471, http://dx.doi.org/10.1016/j.jag.2013.09.00. [2] Tapete D., Cigna F., Masini N., Lasaponara R. 2013. Prospection and monitoring of the archaeological heritage of Nasca, Peru, with ENVISAT ASAR, Archaeological Prospection, 20, 133-147, doi: 10.1002/arp.1449. [3] Lasaponara R, N Masini, 2012 Satellite Remote Sensing, A New Tool for Archaeology (Series Remote Sensing and Digital Image) Springer book [4] Masini N., Lasaponara N., Orefici G. 2009, Addressing the challenge of detecting archaeological adobe structures in Southern Peru using QuickBird imagery, Journal of Cultural Heritage, 10S, pp. e3-e9 [doi:10.1016/j.culher.2009.10.005]. [5] Masini N, R Lasaponara, 2006, Satellite-based recognition of landscape archaeological features related to ancient human transformation Journal of Geophysics and Engineering 3 (3), 230. Lasaponara R., Masini N. 2013, Satellite Synthetic Aperture Radar in Archaeology and Cultural Landscape: An Overview. Archaeological Prospection, 20, 71-78, doi: 10.1002/arp.1452

  20. Tracing of single fibers of the nervus terminalis in the goldfish brain.

    PubMed

    von Bartheld, C S; Meyer, D L

    1986-01-01

    Central projections of the nervus terminalis (n.t.) in the goldfish were investigated using cobalt- and horseradish peroxidase-tracing techniques. Single n.t. fibers were identified after unilateral application of cobalt chloride-lysine to the rostral olfactory bulb. The central course and branching patterns of individual n.t. fibers were studied in serial sections. Eight types of n.t. fibers are differentiated according to pathways and projection patterns. Projection areas of the n.t. include the contralateral olfactory bulb, the ipsilateral periventricular preoptic nucleus, both retinae, the caudal zone of the periventricular hypothalamus bilaterally, and the rostral optic tectum bilaterally. N.t. fibers cross to contralateral targets in the anterior commissure, the optic chiasma, the horizontal commissure, the posterior commissure, and possibly the habenular commissure. We propose criteria that differentiate central n.t. fibers from those of the classical secondary olfactory projections. Branching patterns of eight n.t. fiber types are described. Mesencephalic projections of the n.t. and of secondary olfactory fibers are compared and discussed with regard to prior reports on the olfactory system of teleosts. Further fiber types for which the association with the n.t. could not be established with certainty were traced to the torus longitudinalis, the torus semicircularis, and to the superior reticular nucleus on the ipsilateral side.

  1. Trace elements and REE geochemistry of Middle Devonian carbonate mounds (Maïder Basin, Eastern Anti-Atlas, Morocco): Implications for early diagenetic processes

    NASA Astrophysics Data System (ADS)

    Franchi, Fulvio; Turetta, Clara; Cavalazzi, Barbara; Corami, Fabiana; Barbieri, Roberto

    2016-08-01

    Trace and rare earth elements (REEs) have proven their utility as tools for assessing the genesis and early diagenesis of widespread geological bodies such as carbonate mounds, whose genetic processes are not yet fully understood. Carbonates from the Middle Devonian conical mud mounds of the Maïder Basin (eastern Anti-Atlas, Morocco) have been analysed for their REE and trace element distribution. Collectively, the carbonates from the Maïder Basin mud mounds appear to display coherent REE patterns. Three different geochemical patterns, possibly related with three different diagenetic events, include: i) dyke fills with a normal marine REE pattern probably precipitated in equilibrium with seawater, ii) mound micrite with a particular enrichment of overall REE contents and variable Ce anomaly probably related to variation of pH, increase of alkalinity or dissolution/remineralization of organic matter during early diagenesis, and iii) haematite-rich vein fills precipitated from venting fluids of probable hydrothermal origin. Our results reinforce the hypothesis that these mounds were probably affected by an early diagenesis induced by microbial activity and triggered by abundance of dispersed organic matter, whilst venting may have affected the mounds during a later diagenetic phase.

  2. Field theory of pattern identification

    NASA Astrophysics Data System (ADS)

    Agu, Masahiro

    1988-06-01

    Based on the psychological experimental fact that images in mental space are transformed into other images for pattern identification, a field theory of pattern identification of geometrical patterns is developed with the use of gauge field theory in Euclidean space. Here, the ``image'' or state function ψ[χ] of the brain reacting to a geometrical pattern χ is made to correspond to the electron's wave function in Minkowski space. The pattern identification of the pattern χ with the modified pattern χ+Δχ is assumed to be such that their images ψ[χ] and ψ[χ+Δχ] in the brain are transformable with each other through suitable transformation groups such as parallel transformation, dilatation, or rotation. The transformation group is called the ``image potential'' which corresponds to the vector potential of the gauge field. An ``image field'' derived from the image potential is found to be induced in the brain when the two images ψ[χ] and ψ[χ+Δχ] are not transformable through suitable transformation groups or gauge transformations. It is also shown that, when the image field exists, the final state of the image ψ[χ] is expected to be different, depending on the paths of modifications of the pattern χ leading to a final pattern. The above fact is interpreted as a version of the Aharonov and Bohm effect of the electron's wave function [A. Aharonov and D. Bohm, Phys. Rev. 115, 485 (1959)]. An excitation equation of the image field is also derived by postulating that patterns are identified maximally for the purpose of minimizing the number of memorized standard patterns.

  3. Quantitative Analysis of Trace Element Impurity Levels in Some Gem-Quality Diamonds

    NASA Astrophysics Data System (ADS)

    McNeill, J. C.; Klein-Bendavid, O.; Pearson, D. G.; Nowell, G. M.; Ottley, C. J.; Chinn, I.; Malarkey, J.

    2009-05-01

    Perhaps the most important information required to understand the origin of diamonds is the nature of the fluid that they crystallise from. Constraining the identity of the diamond-forming fluid for high purity gem diamonds is hampered by analytical challenges because of the very low analyte levels involved. Here we use a new ultra- low blank 'off-line' laser ablation method coupled to sector-field ICPMS for the quantitative analysis of fluid-poor gem diamonds. Ten diamonds comprised of both E- and P-type parageneses, from the Premier Mine, South Africa, were analysed for trace element abundances. We assume that the elemental signatures arise from low densities of sub-microscopic fluid inclusions that are analogous to the much higher densities of fluid inclusions commonly found within fluid-rich diamonds exhibiting fibrous growth. Repeatability of multiple (>20) blanks yielded consistently low values so that using the current procedure our limits of quantitation (10-ã blank) are <1pg for most trace elements, except for Sr, Zr, Ba, from 2-9pg and Pb ~30pg. Trace element patterns of the Premier diamond suite show enrichment of LREE over HREE. Abundances broadly decrease with increasing elemental compatibility. As a suite the chondrite normalised diamond patterns show negative Sr, Zr, Ti and Y anomalies and positive U, and Pb anomalies. All sample abundances are very depleted relative to chondrites (0.1 to 0.001X ch). HREE range from 0.1 to 1ppb as do Y, Nb, Cs. Other lighter elements vary from 2-30ppb. Pb reaches several ppb and Ti ranges from ppb values up to 2ppm. No significant difference were observed between the trace element systematics of the eclogitic and peridotitic diamonds. Overall, these initial data have inter-element fractionation patterns similar to those evident from fluid-rich fibrous diamonds and can be sued to infer that both types of diamond-forming fluids share a common origin.

  4. The formation and distribution of hippocampal synapses on patterned neuronal networks

    NASA Astrophysics Data System (ADS)

    Dowell-Mesfin, Natalie M.

    Communication within the central nervous system is highly orchestrated with neurons forming trillions of specialized junctions called synapses. In vivo, biochemical and topographical cues can regulate neuronal growth. Biochemical cues also influence synaptogenesis and synaptic plasticity. The effects of topography on the development of synapses have been less studied. In vitro, neuronal growth is unorganized and complex making it difficult to study the development of networks. Patterned topographical cues guide and control the growth of neuronal processes (axons and dendrites) into organized networks. The aim of this dissertation was to determine if patterned topographical cues can influence synapse formation and distribution. Standard fabrication and compression molding procedures were used to produce silicon masters and polystyrene replicas with topographical cues presented as 1 mum high pillars with diameters of 0.5 and 2.0 mum and gaps of 1.0 to 5.0 mum. Embryonic rat hippocampal neurons grown unto patterned surfaces. A developmental analysis with immunocytochemistry was used to assess the distribution of pre- and post-synaptic proteins. Activity-dependent pre-synaptic vesicle uptake using functional imaging dyes was also performed. Adaptive filtering computer algorithms identified synapses by segmenting juxtaposed pairs of pre- and post-synaptic labels. Synapse number and area were automatically extracted from each deconvolved data set. In addition, neuronal processes were traced automatically to assess changes in synapse distribution. The results of these experiments demonstrated that patterned topographic cues can induce organized and functional neuronal networks that can serve as models for the study of synapse formation and plasticity as well as for the development of neuroprosthetic devices.

  5. Effect of acoustic similarity on short-term auditory memory in the monkey

    PubMed Central

    Scott, Brian H.; Mishkin, Mortimer; Yin, Pingbo

    2013-01-01

    Recent evidence suggests that the monkey’s short-term memory in audition depends on a passively retained sensory trace as opposed to a trace reactivated from long-term memory for use in working memory. Reliance on a passive sensory trace could render memory particularly susceptible to confusion between sounds that are similar in some acoustic dimension. If so, then in delayed matching-to-sample, the monkey’s performance should be predicted by the similarity in the salient acoustic dimension between the sample and subsequent test stimulus, even at very short delays. To test this prediction and isolate the acoustic features relevant to short-term memory, we examined the pattern of errors made by two rhesus monkeys performing a serial, auditory delayed match-to-sample task with interstimulus intervals of 1 s. The analysis revealed that false-alarm errors did indeed result from similarity-based confusion between the sample and the subsequent nonmatch stimuli. Manipulation of the stimuli showed that removal of spectral cues was more disruptive to matching behavior than removal of temporal cues. In addition, the effect of acoustic similarity on false-alarm response was stronger at the first nonmatch stimulus than at the second one. This pattern of errors would be expected if the first nonmatch stimulus overwrote the sample’s trace, and suggests that the passively retained trace is not only vulnerable to similarity-based confusion but is also highly susceptible to overwriting. PMID:23376550

  6. Trophic transfer of trace metals from the polychaete worm Nereis diversicolor to the polychaete N. virens and the decapod crustacean Palaemonetes varians

    USGS Publications Warehouse

    Rainbow, P.S.; Poirier, L.; Smith, B.D.; Brix, K.V.; Luoma, S.N.

    2006-01-01

    Diet is an important exposure route for the uptake of trace metals by aquatic invertebrates, with trace metal trophic transfer depending on 2 stages - assimilation and subsequent accumulation by the predator. This study investigated the trophic transfer of trace metals from the sediment-dwelling polychaete worm Nereis diversicolor from metal-rich estuarine sediments in southwestern UK to 2 predators - another polychaete N. virens (Cu, Zn, Pb, Cd, Fe) and the decapod crustacean Palaemonetes varians (Cu, Zn, Pb, Cd, Fe, Ag, As, Mn). N. virens showed net accumulation of Cu, Zn, Pb and Cd from the prey; accumulation increased with increasing prey concentration, but a coefficient of trophic transfer decreased with increasing prey concentration, probably because a higher proportion of accumulated metal in the prey is bound in less trophically available (insoluble) detoxified forms. The trace metal accumulation patterns of P. varians apparently restricted significant net accumulation of metals from the diet of N. diversicolor to just Cd. There was significant mortality of the decapods fed on the diets of metal-rich worms. Metal-rich invertebrates that have accumulated metals from the rich historical store in the sediments of particular SW England estuaries can potentially pass these metals along food chains, with accumulation and total food chain transfer depending on the metal assimilation efficiencies and accumulation patterns of the animal at each trophic level. This trophic transfer may be significant enough to have ecotoxicological effects. ?? Inter-Research 2006.

  7. Effect of acoustic similarity on short-term auditory memory in the monkey.

    PubMed

    Scott, Brian H; Mishkin, Mortimer; Yin, Pingbo

    2013-04-01

    Recent evidence suggests that the monkey's short-term memory in audition depends on a passively retained sensory trace as opposed to a trace reactivated from long-term memory for use in working memory. Reliance on a passive sensory trace could render memory particularly susceptible to confusion between sounds that are similar in some acoustic dimension. If so, then in delayed matching-to-sample, the monkey's performance should be predicted by the similarity in the salient acoustic dimension between the sample and subsequent test stimulus, even at very short delays. To test this prediction and isolate the acoustic features relevant to short-term memory, we examined the pattern of errors made by two rhesus monkeys performing a serial, auditory delayed match-to-sample task with interstimulus intervals of 1 s. The analysis revealed that false-alarm errors did indeed result from similarity-based confusion between the sample and the subsequent nonmatch stimuli. Manipulation of the stimuli showed that removal of spectral cues was more disruptive to matching behavior than removal of temporal cues. In addition, the effect of acoustic similarity on false-alarm response was stronger at the first nonmatch stimulus than at the second one. This pattern of errors would be expected if the first nonmatch stimulus overwrote the sample's trace, and suggests that the passively retained trace is not only vulnerable to similarity-based confusion but is also highly susceptible to overwriting. Copyright © 2013 Elsevier B.V. All rights reserved.

  8. Lunar Ferroan Anorthosite Petrogenesis: Clues from Trace Element Distributions in FAN Subgroups

    NASA Astrophysics Data System (ADS)

    Floss, Christine; James, Odette B.; McGee, James J.; Crozaz, Ghislaine

    1998-04-01

    The rare earth elements (REE) and selected other trace elements were measured in plagioclase and pyroxene from nine samples of the lunar ferroan anorthosite (FAN) suite of rocks. Samples were selected from each of four FAN subgroups previously defined by James et al. (1989). Plagioclase compositions are homogeneous within each sample, but high- and low-Ca pyroxenes from lithic clasts typically have different REE abundances from their counterparts in the surrounding granulated matrices. Measured plagioclase/low-Ca pyroxene concentration ratios for the REE have steeper patterns than experimentally determined plagioclase/low-Ca pyroxene partition coefficients in most samples. Textural and trace element evidence suggest that, although subsolidus equilibration may be responsible for some of the discrepancy, plagioclase compositions in most samples have been largely unaffected by intermineral redistribution of the REE. The REE systematics of plagioclase from the four subgroups are broadly consistent with their derivation through crystallization from a single evolving magma. However, samples from some of the subgroups exhibit a decoupling of plagioclase and pyroxene compositions that probably reflects the complexities inherent in crystallization from a large-scale magmatic system. For example, two anorthosites with very magnesian mafic minerals have highly evolved trace element compositions; major element compositions in plagioclase also do not reflect the evolutionary sequence recorded by their REE compositions. Finally, a noritic anorthosite breccia with relatively ferroan mafic minerals contains several clasts with high and variable REE and other trace element abundances. Although plagioclase REE compositions are consistent with their derivation from a magma with a KREEPy trace element signature, very shallow REE patterns in the pyroxenes suggest the addition of a component enriched in the light REE.

  9. Golden Proportion Analysis of Dental-Skeletal Patterns of Class II and III Patients Pre and Post Orthodontic-orthognathic Treatment.

    PubMed

    Bragatto, Fernanda P; Chicarelli, Mariliani; Kasuya, Amanda Vb; Takeshita, Wilton M; Iwaki-Filho, Liogi; Iwaki, Lilian Cv

    2016-09-01

    The golden proportion has been used in dentistry in an attempt to improve facial function and, possibly, esthetics by simplifying the diagnosis of facial and dental disharmony. The aim of this study is to analyze pre- and postoperative cephalometric tracings of lateral cephalograms of patients with class II and III deformities submitted to orthognathic surgery, and verify if the 13 dental-skeletal patterns (ratios), as defined by Ricketts, moved closer to or further away from the golden proportion. A total of 110 lateral cephalometric radiographs, 55 obtained preoperatively and 55 postoperatively, were analyzed using Dolphin Imaging software. Radiographs analysis demonstrated that ratios 1, 3, 4, 5, 7, 8, 9, 10, and 13 remained statistically different from the golden proportion postoperatively. Ratio 12 was the only one to move closer to the golden number, while the opposite happened with ratio 6, which moved further away after the surgery. Ratios 2 and 11 kept statistically similar to the golden proportion both pre and postoperatively. It may be concluded that orthognathic surgery had little effect on the proportions studied, and that the golden proportion was not present in the majority of the ratios analyzed neither before nor after surgery. Determine whether the facial patterns approach the golden ratio after surgical correction. Also determine whether the golden ratio may be a standard to guide the surgical treatment of patients with skeletal patterns of type II and III.

  10. A comparison of gantry-mounted x-ray-based real-time target tracking methods.

    PubMed

    Montanaro, Tim; Nguyen, Doan Trang; Keall, Paul J; Booth, Jeremy; Caillet, Vincent; Eade, Thomas; Haddad, Carol; Shieh, Chun-Chien

    2018-03-01

    Most modern radiotherapy machines are built with a 2D kV imaging system. Combining this imaging system with a 2D-3D inference method would allow for a ready-made option for real-time 3D tumor tracking. This work investigates and compares the accuracy of four existing 2D-3D inference methods using both motion traces inferred from external surrogates and measured internally from implanted beacons. Tumor motion data from 160 fractions (46 thoracic/abdominal patients) of Synchrony traces (inferred traces), and 28 fractions (7 lung patients) of Calypso traces (internal traces) from the LIGHT SABR trial (NCT02514512) were used in this study. The motion traces were used as the ground truth. The ground truth trajectories were used in silico to generate 2D positions projected on the kV detector. These 2D traces were then passed to the 2D-3D inference methods: interdimensional correlation, Gaussian probability density function (PDF), arbitrary-shape PDF, and the Kalman filter. The inferred 3D positions were compared with the ground truth to determine tracking errors. The relationships between tracking error and motion magnitude, interdimensional correlation, and breathing periodicity index (BPI) were also investigated. Larger tracking errors were observed from the Calypso traces, with RMS and 95th percentile 3D errors of 0.84-1.25 mm and 1.72-2.64 mm, compared to 0.45-0.68 mm and 0.74-1.13 mm from the Synchrony traces. The Gaussian PDF method was found to be the most accurate, followed by the Kalman filter, the interdimensional correlation method, and the arbitrary-shape PDF method. Tracking error was found to strongly and positively correlate with motion magnitude for both the Synchrony and Calypso traces and for all four methods. Interdimensional correlation and BPI were found to negatively correlate with tracking error only for the Synchrony traces. The Synchrony traces exhibited higher interdimensional correlation than the Calypso traces especially in the anterior-posterior direction. Inferred traces often exhibit higher interdimensional correlation, which are not true representation of thoracic/abdominal motion and may underestimate kV-based tracking errors. The use of internal traces acquired from systems such as Calypso is advised for future kV-based tracking studies. The Gaussian PDF method is the most accurate 2D-3D inference method for tracking thoracic/abdominal targets. Motion magnitude has significant impact on 2D-3D inference error, and should be considered when estimating kV-based tracking error. © 2018 American Association of Physicists in Medicine.

  11. Flow visualization V; Proceedings of the 5th International Symposium, Prague, Czechoslovakia, Aug. 21-25, 1989

    NASA Astrophysics Data System (ADS)

    Reznicek, R.

    The present conference on flow visualization encompasses methods exploiting tracing particles, surface tracing methods, methods exploiting the effects of streaming fluid on passing radiation/field, computer-aided flow visualization, and applications to fluid mechanics, aerodynamics, flow devices, shock tubes, and heat/mass transfer. Specific issues include visualizing velocity distribution by stereo photography, dark-field Fourier quasiinterferometry, speckle tomography of an open flame, a fast eye for real-time image analysis, and velocity-field determination based on flow-image analysis. Also addressed are flows around rectangular prisms with oscillating flaps at the leading edges, the tomography of aerodynamic objects, the vapor-screen technique applied to a delta-wing aircraft, flash-lamp planar imaging, IR-thermography applications in convective heat transfer, and the visualization of marangoni effects in evaporating sessile drops.

  12. A Tractography Comparison between Turboprop and Spin-Echo Echo-Planar Diffusion Tensor Imaging

    PubMed Central

    Gui, Minzhi; Peng, Huiling; Carew, John D.; Lesniak, Maciej S.; Arfanakis, Konstantinos

    2008-01-01

    The development of accurate, non-invasive methods for mapping white matter fiber-tracts is of critical importance. However, fiber-tracking is typically performed on diffusion tensor imaging (DTI) data obtained with echo-planar-based imaging techniques (EPI), which suffer from susceptibility-related image artifacts, and image warping due to eddy-currents. Thus, a number of white matter fiber-bundles mapped using EPI-based DTI data are distorted and/or terminated early. This severely limits the clinical potential of fiber-tracking. In contrast, Turboprop-MRI provides images with significantly fewer susceptibility and eddy-current-related artifacts than EPI. The purpose of this work was to compare fiber-tracking results obtained from DTI data acquired with Turboprop-DTI and EPI-based DTI. It was shown that, in brain regions near magnetic field inhomogeneities, white matter fiber-bundles obtained with EPI-based DTI were distorted and/or partially detected, when magnetic susceptibility-induced distortions were not corrected. After correction, residual distortions were still present and several fiber-tracts remained partially detected. In contrast, when using Turboprop-DTI data, all traced fiber-tracts were in agreement with known anatomy. The inter-session reproducibility of tractography results was higher for Turboprop than EPI-based DTI data in regions near field inhomogeneities. Thus, Turboprop may be a more appropriate DTI data acquisition technique for tracing white matter fibers near regions with significant magnetic susceptibility differences, as well as in longitudinal studies of such fibers. However, the intra-session reproducibility of tractography results was higher for EPI-based than Turboprop DTI data. Thus, EPI-based DTI may be more advantageous for tracing fibers minimally affected by field inhomogeneities. PMID:18621131

  13. A tractography comparison between turboprop and spin-echo echo-planar diffusion tensor imaging.

    PubMed

    Gui, Minzhi; Peng, Huiling; Carew, John D; Lesniak, Maciej S; Arfanakis, Konstantinos

    2008-10-01

    The development of accurate, non-invasive methods for mapping white matter fiber-tracts is of critical importance. However, fiber-tracking is typically performed on diffusion tensor imaging (DTI) data obtained with echo-planar-based imaging techniques (EPI), which suffer from susceptibility-related image artifacts, and image warping due to eddy-currents. Thus, a number of white matter fiber-bundles mapped using EPI-based DTI data are distorted and/or terminated early. This severely limits the clinical potential of fiber-tracking. In contrast, Turboprop-MRI provides images with significantly fewer susceptibility and eddy-current-related artifacts than EPI. The purpose of this work was to compare fiber-tracking results obtained from DTI data acquired with Turboprop-DTI and EPI-based DTI. It was shown that, in brain regions near magnetic field inhomogeneities, white matter fiber-bundles obtained with EPI-based DTI were distorted and/or partially detected, when magnetic susceptibility-induced distortions were not corrected. After correction, residual distortions were still present and several fiber-tracts remained partially detected. In contrast, when using Turboprop-DTI data, all traced fiber-tracts were in agreement with known anatomy. The inter-session reproducibility of tractography results was higher for Turboprop than EPI-based DTI data in regions near field inhomogeneities. Thus, Turboprop may be a more appropriate DTI data acquisition technique for tracing white matter fibers near regions with significant magnetic susceptibility differences, as well as in longitudinal studies of such fibers. However, the intra-session reproducibility of tractography results was higher for EPI-based than Turboprop DTI data. Thus, EPI-based DTI may be more advantageous for tracing fibers minimally affected by field inhomogeneities.

  14. VizieR Online Data Catalog: Dwarf galaxies surface brightness profiles. II. (Herrmann+, 2016)

    NASA Astrophysics Data System (ADS)

    Herrmann, K. A.; Hunter, D. A.; Elmegreen, B. G.

    2016-07-01

    Our galaxy sample (see Table1) is derived from the survey of nearby (>30Mpc) late-type galaxies conducted by Hunter & Elmegreen 2006 (cat. J/ApJS/162/49). The full survey includes 94 dwarf Irregulars (dIms), 26 Blue Compact Dwarfs (BCDs), and 20 Magellanic-type spirals (Sms). The 141 dwarf sample presented in the first paper of the present series (Paper I; Herrmann et al. 2013, Cat. J/AJ/146/104) contains one fewer Sm galaxy and two additional dIm systems than the original survey. A multi-wavelength data set has been assembled for these galaxies. The data include Hα images (129 galaxies with detections) to trace star formation over the past 10Myr (Hunter & Elmegreen 2004, Cat. J/AJ/128/2170) and satellite UV images (61 galaxies observed) obtained with the Galaxy Evolution Explorer (GALEX) to trace star formation over the past ~200Myr. The GALEX data include images from two passbands with effective wavelengths of 1516Å (FUV) and 2267Å (NUV) and resolutions of 4'' and 5.6'', respectively. Three of the galaxies in our sample with NUV data do not have FUV data. To trace older stars we have UBV images, which are sensitive to stars formed over the past 1Gyr for on-going star formation, and images in at least one band of JHK for 40 galaxies in the sample, which integrates the star formation over the galaxy's lifetime. Note that nine dwarfs are missing UB data and three more are missing U-band data. In addition we made use of 3.6μm images (39 galaxies) obtained with the Infrared Array Camera (IRAC) in the Spitzer archives also to probe old stars. (3 data files).

  15. Beyond modern landscape features: New insights in the archaeological area of Tiwanaku in Bolivia from satellite data

    NASA Astrophysics Data System (ADS)

    Lasaponara, Rosa; Masini, Nicola

    2014-02-01

    The aim of this paper is to investigate the cultural landscape of the archaeological area of Tiwanaku (Bolivia) using multiscale, multispectral and multitemporal satellite data. Geospatial analysis techniques were applied to the satellite data sets in order to enhance and map traces of past human activities and perform a spatial characterization of environmental and cultural patterns. In particular, in the Tiwanaku area, the approach based on local indicators of spatial autocorrelation (LISA) applied to ASTER data allowed us to identify traces of a possible ancient hydrographic network with a clear spatial relation with the well-known moat surrounding the core of the monumental area. The same approach applied to QuickBird data, allowed us to identify numerous traces of archaeological interest, in Mollo Kontu mound, less investigated than the monumental area. Some of these traces were in perfect accordance with the results of independent studies, other were completely unknown. As a whole, the detected features, composing a geometric pattern with roughly North-South orientation, closely match those of the other residential contexts at Tiwanaku. These new insights, captured from ASTER and QuickBird data processing, suggested new questions on the ancient landscape and provided important information for planning future field surveys and archaeogeophyical investigations.

  16. Dual-Energy Contrast-Enhanced Breast Tomosynthesis: Optimization of Beam Quality for Dose and Image Quality

    PubMed Central

    Samei, Ehsan; Saunders, Robert S.

    2014-01-01

    Dual-energy contrast-enhanced breast tomosynthesis is a promising technique to obtain three-dimensional functional information from the breast with high resolution and speed. To optimize this new method, this study searched for the beam quality that maximized image quality in terms of mass detection performance. A digital tomosynthesis system was modeled using a fast ray-tracing algorithm, which created simulated projection images by tracking photons through a voxelized anatomical breast phantom containing iodinated lesions. The single-energy images were combined into dual-energy images through a weighted log subtraction process. The weighting factor was optimized to minimize anatomical noise, while the dose distribution was chosen to minimize quantum noise. The dual-energy images were analyzed for the signal difference to noise ratio (SdNR) of iodinated masses. The fast ray-tracing explored 523,776 dual-energy combinations to identify which yields optimum mass SdNR. The ray-tracing results were verified using a Monte Carlo model for a breast tomosynthesis system with a selenium-based flat-panel detector. The projection images from our voxelized breast phantom were obtained at a constant total glandular dose. The projections were combined using weighted log subtraction and reconstructed using commercial reconstruction software. The lesion SdNR was measured in the central reconstructed slice. The SdNR performance varied markedly across the kVp and filtration space. Ray-tracing results indicated that the mass SdNR was maximized with a high-energy tungsten beam at 49 kVp with 92.5 μm of copper filtration and a low-energy tungsten beam at 49 kVp with 95 μm of tin filtration. This result was consistent with Monte Carlo findings. This mammographic technique led to a mass SdNR of 0.92 ± 0.03 in the projections and 3.68 ± 0.19 in the reconstructed slices. These values were markedly higher than those for non-optimized techniques. Our findings indicate that dual-energy breast tomosynthesis can be performed optimally at 49 kVp with alternative copper and tin filters, with reconstruction following weighted subtraction. The optimum technique provides best visibility of iodine against structured breast background in dual-energy contrast-enhanced breast tomosynthesis. PMID:21908902

  17. Improved GO/PO method and its application to wideband SAR image of conducting objects over rough surface

    NASA Astrophysics Data System (ADS)

    Jiang, Wang-Qiang; Zhang, Min; Nie, Ding; Jiao, Yong-Chang

    2018-04-01

    To simulate the multiple scattering effect of target in synthetic aperture radar (SAR) image, the hybrid method GO/PO method, which combines the geometrical optics (GO) and physical optics (PO), is employed to simulate the scattering field of target. For ray tracing is time-consuming, the Open Graphics Library (OpenGL) is usually employed to accelerate the process of ray tracing. Furthermore, the GO/PO method is improved for the simulation in low pixel situation. For the improved GO/PO method, the pixels are arranged corresponding to the rectangular wave beams one by one, and the GO/PO result is the sum of the contribution values of all the rectangular wave beams. To get high-resolution SAR image, the wideband echo signal is simulated which includes information of many electromagnetic (EM) waves with different frequencies. Finally, the improved GO/PO method is used to simulate the SAR image of targets above rough surface. And the effects of reflected rays and the size of pixel matrix on the SAR image are also discussed.

  18. Reflectance Estimation from Urban Terrestrial Images: Validation of a Symbolic Ray-Tracing Method on Synthetic Data

    NASA Astrophysics Data System (ADS)

    Coubard, F.; Brédif, M.; Paparoditis, N.; Briottet, X.

    2011-04-01

    Terrestrial geolocalized images are nowadays widely used on the Internet, mainly in urban areas, through immersion services such as Google Street View. On the long run, we seek to enhance the visualization of these images; for that purpose, radiometric corrections must be performed to free them from illumination conditions at the time of acquisition. Given the simultaneously acquired 3D geometric model of the scene with LIDAR or vision techniques, we face an inverse problem where the illumination and the geometry of the scene are known and the reflectance of the scene is to be estimated. Our main contribution is the introduction of a symbolic ray-tracing rendering to generate parametric images, for quick evaluation and comparison with the acquired images. The proposed approach is then based on an iterative estimation of the reflectance parameters of the materials, using a single rendering pre-processing. We validate the method on synthetic data with linear BRDF models and discuss the limitations of the proposed approach with more general non-linear BRDF models.

  19. Segmentation of images of abdominal organs.

    PubMed

    Wu, Jie; Kamath, Markad V; Noseworthy, Michael D; Boylan, Colm; Poehlman, Skip

    2008-01-01

    Abdominal organ segmentation, which is, the delineation of organ areas in the abdomen, plays an important role in the process of radiological evaluation. Attempts to automate segmentation of abdominal organs will aid radiologists who are required to view thousands of images daily. This review outlines the current state-of-the-art semi-automated and automated methods used to segment abdominal organ regions from computed tomography (CT), magnetic resonance imaging (MEI), and ultrasound images. Segmentation methods generally fall into three categories: pixel based, region based and boundary tracing. While pixel-based methods classify each individual pixel, region-based methods identify regions with similar properties. Boundary tracing is accomplished by a model of the image boundary. This paper evaluates the effectiveness of the above algorithms with an emphasis on their advantages and disadvantages for abdominal organ segmentation. Several evaluation metrics that compare machine-based segmentation with that of an expert (radiologist) are identified and examined. Finally, features based on intensity as well as the texture of a small region around a pixel are explored. This review concludes with a discussion of possible future trends for abdominal organ segmentation.

  20. Skeleton-based tracing of curved fibers from 3D X-ray microtomographic imaging

    NASA Astrophysics Data System (ADS)

    Huang, Xiang; Wen, Donghui; Zhao, Yanwei; Wang, Qinghui; Zhou, Wei; Deng, Daxiang

    A skeleton-based fiber tracing algorithm is described and applied on a specific fibrous material, porous metal fiber sintered sheet (PMFSS), featuring high porosity and curved fibers. The skeleton segments are firstly categorized according to the connectivity of the skeleton paths. Spurious segments like fiber bonds are detected making extensive use of the distance transform (DT) values. Single fibers are then traced and reconstructed by consecutively choosing the connecting skeleton segment pairs that show the most similar orientations and radius. Moreover, to reduce the misconnection due to the tracing orders, a multilevel tracing strategy is proposed. The fibrous network is finally reconstructed by dilating single fibers according to the DT values. Based on the traced single fibers, various morphology information regarding fiber length, radius, orientation, and tortuosity are quantitatively analyzed and compared with our previous results (Wang et al., 2013). Moreover, the number of bonds per fibers are firstly accessed. The methodology described in this paper can be expanded to other fibrous materials with adapted parameters.

  1. Visual tracing of diffusion and biodistribution for amphiphilic cationic nanoparticles using photoacoustic imaging after ex vivo intravitreal injections

    PubMed Central

    Xu, Xu; Xu, Zhaokang; Liu, Junyi; Zhang, Zhaoliang; Chen, Hao; Li, Xingyi; Shi, Shuai

    2016-01-01

    To visually trace the diffusion and biodistribution of amphiphilic cation micelles after vitreous injection, various triblock copolymers of monomethoxy poly(ethylene glycol)–poly(ε-caprolactone)–polyethylenimine were synthesized with different structures of hydrophilic and hydrophobic segments, followed by labeling with near-infrared fluorescent dye Cyanine5 or Cyanine7. The micellar size, polydispersity index, and surface charge were measured by dynamic light scattering. The diffusion was monitored using photoacoustic imaging in real time after intravitreal injections. Moreover, the labeled nanoparticle distribution in the posterior segment of the eye was imaged histologically by confocal microscopy. The results showed that the hydrophilic segment increased vitreous diffusion, while a positive charge on the particle surface hindered diffusion. In addition, the particles diffused through the retinal layers and were enriched in the retinal pigment epithelial layer. This work tried to study the diffusion rate via a simple method by using visible images, and then provided basic data for the development of intraocular drug carriers. PMID:27785015

  2. X-Ray Fluorescence Imaging of Ancient Artifacts

    NASA Astrophysics Data System (ADS)

    Thorne, Robert; Geil, Ethan; Hudson, Kathryn; Crowther, Charles

    2011-03-01

    Many archaeological artifacts feature inscribed and/or painted text or figures which, through erosion and aging, have become difficult or impossible to read with conventional methods. Often, however, the pigments in paints contain metallic elements, and traces may remain even after visible markings are gone. A promising non-destructive technique for revealing these remnants is X-ray fluorescence (XRF) imaging, in which a tightly focused beam of monochromatic synchrotron radiation is raster scanned across a sample. At each pixel, an energy-dispersive detector records a fluorescence spectrum, which is then analyzed to determine element concentrations. In this way, a map of various elements is made across a region of interest. We have succesfully XRF imaged ancient Greek, Roman, and Mayan artifacts, and in many cases, the element maps have revealed significant new information, including previously invisible painted lines and traces of iron from tools used to carve stone tablets. X-ray imaging can be used to determine an object's provenance, including the region where it was produced and whether it is authentic or a copy.

  3. Visual tracing of diffusion and biodistribution for amphiphilic cationic nanoparticles using photoacoustic imaging after ex vivo intravitreal injections.

    PubMed

    Xu, Xu; Xu, Zhaokang; Liu, Junyi; Zhang, Zhaoliang; Chen, Hao; Li, Xingyi; Shi, Shuai

    To visually trace the diffusion and biodistribution of amphiphilic cation micelles after vitreous injection, various triblock copolymers of monomethoxy poly(ethylene glycol)-poly(ε-caprolactone)-polyethylenimine were synthesized with different structures of hydrophilic and hydrophobic segments, followed by labeling with near-infrared fluorescent dye Cyanine5 or Cyanine7. The micellar size, polydispersity index, and surface charge were measured by dynamic light scattering. The diffusion was monitored using photoacoustic imaging in real time after intravitreal injections. Moreover, the labeled nanoparticle distribution in the posterior segment of the eye was imaged histologically by confocal microscopy. The results showed that the hydrophilic segment increased vitreous diffusion, while a positive charge on the particle surface hindered diffusion. In addition, the particles diffused through the retinal layers and were enriched in the retinal pigment epithelial layer. This work tried to study the diffusion rate via a simple method by using visible images, and then provided basic data for the development of intraocular drug carriers.

  4. Retrospective study of the effect of remifentanil use during labor on fetal heart rate patterns.

    PubMed

    Boterenbrood, Danne; Wassen, Martine M; Visser, Gerard H A; Nijhuis, Jan G

    2018-01-01

    To investigate possible associations between remifentanil and the appearance of sinusoidal heart rate patterns in fetuses, and neonatal outcomes. The present retrospective cohort study included data from patients at over 37 weeks of singleton or multiple pregnancies attending Zuyderland Medical Center, Sittard, the Netherlands, in labor between June 1, and August 31, 2015. Patient data were stratified by whether remifentanil was administered during delivery (remifentanil group) or not (control group), and fetal heart rate tracings were reviewed to identify sinusoidal heart rate patterns. The neonatal outcomes compared were 5-minute Apgar scores and umbilical artery pH. There were 119 patients included in the study; 60 in the remifentanil group and 59 in the control group. Tracings from 20 (33%) patients in the remifentanil group exhibited a sinusoidal heart rate pattern after remifentanil administration, compared with 5 (8%) patients in the control group (P=0.001). The median time before the onset of sinusoidal patterns after remifentanil administration was 12 minutes. No adverse neonatal outcomes were recorded in either group. Remifentanil use during labor was associated with the occurrence of sinusoidal heart rate patterns in the fetus; this was not associated with adverse neonatal outcomes. © 2017 International Federation of Gynecology and Obstetrics.

  5. The visual development of hand-centered receptive fields in a neural network model of the primate visual system trained with experimentally recorded human gaze changes

    PubMed Central

    Galeazzi, Juan M.; Navajas, Joaquín; Mender, Bedeho M. W.; Quian Quiroga, Rodrigo; Minini, Loredana; Stringer, Simon M.

    2016-01-01

    ABSTRACT Neurons have been found in the primate brain that respond to objects in specific locations in hand-centered coordinates. A key theoretical challenge is to explain how such hand-centered neuronal responses may develop through visual experience. In this paper we show how hand-centered visual receptive fields can develop using an artificial neural network model, VisNet, of the primate visual system when driven by gaze changes recorded from human test subjects as they completed a jigsaw. A camera mounted on the head captured images of the hand and jigsaw, while eye movements were recorded using an eye-tracking device. This combination of data allowed us to reconstruct the retinal images seen as humans undertook the jigsaw task. These retinal images were then fed into the neural network model during self-organization of its synaptic connectivity using a biologically plausible trace learning rule. A trace learning mechanism encourages neurons in the model to learn to respond to input images that tend to occur in close temporal proximity. In the data recorded from human subjects, we found that the participant’s gaze often shifted through a sequence of locations around a fixed spatial configuration of the hand and one of the jigsaw pieces. In this case, trace learning should bind these retinal images together onto the same subset of output neurons. The simulation results consequently confirmed that some cells learned to respond selectively to the hand and a jigsaw piece in a fixed spatial configuration across different retinal views. PMID:27253452

  6. The visual development of hand-centered receptive fields in a neural network model of the primate visual system trained with experimentally recorded human gaze changes.

    PubMed

    Galeazzi, Juan M; Navajas, Joaquín; Mender, Bedeho M W; Quian Quiroga, Rodrigo; Minini, Loredana; Stringer, Simon M

    2016-01-01

    Neurons have been found in the primate brain that respond to objects in specific locations in hand-centered coordinates. A key theoretical challenge is to explain how such hand-centered neuronal responses may develop through visual experience. In this paper we show how hand-centered visual receptive fields can develop using an artificial neural network model, VisNet, of the primate visual system when driven by gaze changes recorded from human test subjects as they completed a jigsaw. A camera mounted on the head captured images of the hand and jigsaw, while eye movements were recorded using an eye-tracking device. This combination of data allowed us to reconstruct the retinal images seen as humans undertook the jigsaw task. These retinal images were then fed into the neural network model during self-organization of its synaptic connectivity using a biologically plausible trace learning rule. A trace learning mechanism encourages neurons in the model to learn to respond to input images that tend to occur in close temporal proximity. In the data recorded from human subjects, we found that the participant's gaze often shifted through a sequence of locations around a fixed spatial configuration of the hand and one of the jigsaw pieces. In this case, trace learning should bind these retinal images together onto the same subset of output neurons. The simulation results consequently confirmed that some cells learned to respond selectively to the hand and a jigsaw piece in a fixed spatial configuration across different retinal views.

  7. NEW MEDIA AND THE NEW EDUCATION.

    ERIC Educational Resources Information Center

    MCLUHAN, MARSHALL

    THE ELECTRONIC AGE BRINGS WITH IT NEW PATTERNS FOR TEACHING AND LEARNING. EDUCATORS AND LAYMEN NEED TO ORIENT THEMSELVES TO BE ABLE TO GRASP AND BENEFIT FROM THE NEW TECHNIQUES. THE BEGINNINGS OF THE EXPLOSION IN LEARNING ARE TRACED, STARTING WITH THE PRINTING PRESS. PRINTED BOOKS ALTERED PATTERNS OF STUDY MAKING IT POSSIBLE TO READ WIDELY WITHOUT…

  8. Developmental Changes in Perceptions of Attractiveness: A Role of Experience?

    ERIC Educational Resources Information Center

    Cooper, Philip A.; Geldart, Sybil S.; Mondloch, Catherine J.; Maurer, Daphne

    2006-01-01

    In three experiments, we traced the development of the adult pattern of judgments of attractiveness for faces that have been altered to have internal features in low, average, or high positions. Twelve-year-olds and adults demonstrated identical patterns of results: they rated faces with features in an average location as significantly more…

  9. Elementary School Students' Strategic Learning: Does Task-Type Matter?

    ERIC Educational Resources Information Center

    Malmberg, Jonna; Järvelä, Sanna; Kirschner, Paul A.

    2014-01-01

    This study investigated what types of learning patterns and strategies elementary school students use to carry out ill- and well-structured tasks. Specifically, it was investigated which and when learning patterns actually emerge with respect to students' task solutions. The present study uses computer log file traces to investigate how…

  10. Patterns in Elementary School Students' Strategic Actions in Varying Learning Situations

    ERIC Educational Resources Information Center

    Malmberg, Jonna; Järvenoja, Hanna; Järvelä, Sanna

    2013-01-01

    This study uses log file traces to examine differences between high-and low-achieving students' strategic actions in varying learning situations. In addition, this study illustrates, in detail, what strategic and self-regulated learning constitutes in practice. The study investigates the learning patterns that emerge in learning situations…

  11. Gabor filter for the segmentation of skin lesions from ultrasonographic images

    NASA Astrophysics Data System (ADS)

    Petrella, Lorena I.; Gómez, W.; Alvarenga, André V.; Pereira, Wagner C. A.

    2012-05-01

    The present work applies Gabor filters bank for texture analysis of skin lesions images, obtained by ultrasound biomicroscopy. The regions affected by the lesions were differentiated from surrounding tissue in all the analyzed cases; however the accuracy of the traced borders showed some limitations in part of the images. Future steps are being contemplated, attempting to enhance the technique performance.

  12. "Drinking Deeply with Delight": An Investigation of Transformative Images in Isaiah 1 and 65-66

    ERIC Educational Resources Information Center

    Radford, Peter

    2016-01-01

    This project examines the images used in the beginning and ending chapters of Isaiah. The purpose of this project is to trace the transformation of specific images from their introduction in Isaiah 1 to their re-interpretation in Isaiah 65-66. While this analysis uses the verbal parallels (shared vocabulary) as a starting point, the present…

  13. Exploiting Data Similarity to Reduce Memory Footprints

    DTIC Science & Technology

    2011-01-01

    leslie3d Fortran Computational Fluid Dynamics (CFD) application 122. tachyon C Parallel Ray Tracing application 128.GAPgeofem C and Fortran Simulates...benefits most from SBLLmalloc; LAMMPS, which shows moderate similarity from primarily zero pages; and 122. tachyon , a parallel ray- tracing application...similarity across MPI tasks. They primarily are zero- pages although a small fraction (≈10%) are non-zero pages. 122. tachyon is an image rendering

  14. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lee, Gregory L.; Arnold, Dorian; LeGendre, Matthew

    STAT is a light weight debugging tool that gathers and merges stack traces from all of the processes in a parallel application. STAT uses the MRNet tree based overlay network to broadcast commands from the tool front-end to the STAT daemons and for the front-end to gather the traces from the STAT daemons. As the traces propagate through the MRNet network tree, they are merged across all tasks to form a similar function call patterns and to delineate a small set of equivalence classes. A representative task from each of these classes can then be fed into a full featuremore » debugger like TolalView for root cause analysis.« less

  15. Crater Chains

    NASA Technical Reports Server (NTRS)

    2003-01-01

    [figure removed for brevity, see original site]

    The large crater at the top of this THEMIS visible image has several other craters inside of it. Most noticeable are the craters that form a 'chain' on the southern wall of the large crater. These craters are a wonderful example of secondary impacts. They were formed when large blocks of ejecta from an impact crashed back down onto the surface of Mars. Secondaries often form radial patterns around the impact crater that generated them, allowing researchers to trace them back to their origin.

    Note: this THEMIS visual image has not been radiometrically nor geometrically calibrated for this preliminary release. An empirical correction has been performed to remove instrumental effects. A linear shift has been applied in the cross-track and down-track direction to approximate spacecraft and planetary motion. Fully calibrated and geometrically projected images will be released through the Planetary Data System in accordance with Project policies at a later time.

    NASA's Jet Propulsion Laboratory manages the 2001 Mars Odyssey mission for NASA's Office of Space Science, Washington, D.C. The Thermal Emission Imaging System (THEMIS) was developed by Arizona State University, Tempe, in collaboration with Raytheon Santa Barbara Remote Sensing. The THEMIS investigation is led by Dr. Philip Christensen at Arizona State University. Lockheed Martin Astronautics, Denver, is the prime contractor for the Odyssey project, and developed and built the orbiter. Mission operations are conducted jointly from Lockheed Martin and from JPL, a division of the California Institute of Technology in Pasadena.

    Image information: VIS instrument. Latitude 19.3, Longitude 347.5 East (12.5 West). 19 meter/pixel resolution.

  16. Evaluating progressive-rendering algorithms in appearance design tasks.

    PubMed

    Jiawei Ou; Karlik, Ondrej; Křivánek, Jaroslav; Pellacini, Fabio

    2013-01-01

    Progressive rendering is becoming a popular alternative to precomputational approaches to appearance design. However, progressive algorithms create images exhibiting visual artifacts at early stages. A user study investigated these artifacts' effects on user performance in appearance design tasks. Novice and expert subjects performed lighting and material editing tasks with four algorithms: random path tracing, quasirandom path tracing, progressive photon mapping, and virtual-point-light rendering. Both the novices and experts strongly preferred path tracing to progressive photon mapping and virtual-point-light rendering. None of the participants preferred random path tracing to quasirandom path tracing or vice versa; the same situation held between progressive photon mapping and virtual-point-light rendering. The user workflow didn’t differ significantly with the four algorithms. The Web Extras include a video showing how four progressive-rendering algorithms converged (at http://youtu.be/ck-Gevl1e9s), the source code used, and other supplementary materials.

  17. WGA-Alexa conjugates for axonal tracing

    PubMed Central

    Levy, Sabrina L.; White, Joshua J.; Lackey, Elizabeth P.; Schwartz, Lindsey; Sillitoe, Roy V.

    2017-01-01

    Anatomical labeling approaches are essential for understanding brain organization. Among these approaches are various methods of performing tract tracing. However, a major hurdle to overcome when marking neurons in vivo is visibility. Poor visibility makes it challenging to image a desired neuronal pathway so that it can be easily differentiated from a closely neighboring pathway. As a result, it becomes impossible to analyze individual projections or their connections. The tracer that is chosen for a given purpose has a major influence on the quality of the tracing. Here, we describe the wheat germ agglutinin (WGA) tracer conjugated to Alexa fluorophores for reliable high-resolution tracing of central nervous system projections. Using the mouse cerebellum as a model system, we implement WGA-Alexa tracing for marking and mapping neural circuits that control motor function. We also show its utility for marking localized regions of the cerebellum after performing single-unit extracellular recordings in vivo. PMID:28398642

  18. Analysis of trace fibers by IR-MALDESI imaging coupled with high resolving power MS

    PubMed Central

    Cochran, Kristin H.; Barry, Jeremy A.; Robichaud, Guillaume

    2016-01-01

    Trace evidence is a significant portion of forensic cases. Textile fibers are a common form of trace evidence that are gaining importance in criminal cases. Currently, qualitative techniques that do not yield structural information are primarily used for fiber analysis, but mass spectrometry is gaining an increasing role in this field. Mass spectrometry yields more quantitative structural information about the dye and polymer that can be used for more conclusive comparisons. Matrix-assisted laser desorption electrospray ionization (MALDESI) is a hybrid ambient ionization source being investigated for use in mass spectrometric fiber analysis. In this manuscript, IR-MALDESI was used as a source for mass spectrometry imaging (MSI) of a dyed nylon fiber cluster and single fiber. Information about the fiber polymer as well as the dye were obtained from a single fiber which was on the order of 10 μm in diameter. These experiments were performed directly from the surface of a tape lift of the fiber with a background of extraneous fibers. PMID:25081013

  19. Analysis of trace fibers by IR-MALDESI imaging coupled with high resolving power MS.

    PubMed

    Cochran, Kristin H; Barry, Jeremy A; Robichaud, Guillaume; Muddiman, David C

    2015-01-01

    Trace evidence is a significant portion of forensic cases. Textile fibers are a common form of trace evidence that are gaining importance in criminal cases. Currently, qualitative techniques that do not yield structural information are primarily used for fiber analysis, but mass spectrometry is gaining an increasing role in this field. Mass spectrometry yields more quantitative structural information about the dye and polymer that can be used for more conclusive comparisons. Matrix-assisted laser desorption electrospray ionization (MALDESI) is a hybrid ambient ionization source being investigated for use in mass spectrometric fiber analysis. In this manuscript, IR-MALDESI was used as a source for mass spectrometry imaging (MSI) of a dyed nylon fiber cluster and single fiber. Information about the fiber polymer as well as the dye were obtained from a single fiber which was on the order of 10 μm in diameter. These experiments were performed directly from the surface of a tape lift of the fiber with a background of extraneous fibers.

  20. Trace Elements in Ovaries: Measurement and Physiology.

    PubMed

    Ceko, Melanie J; O'Leary, Sean; Harris, Hugh H; Hummitzsch, Katja; Rodgers, Raymond J

    2016-04-01

    Traditionally, research in the field of trace element biology and human and animal health has largely depended on epidemiological methods to demonstrate involvement in biological processes. These studies were typically followed by trace element supplementation trials or attempts at identification of the biochemical pathways involved. With the discovery of biological molecules that contain the trace elements, such as matrix metalloproteinases containing zinc (Zn), cytochrome P450 enzymes containing iron (Fe), and selenoproteins containing selenium (Se), much of the current research focuses on these molecules, and, hence, only indirectly on trace elements themselves. This review focuses largely on two synchrotron-based x-ray techniques: X-ray absorption spectroscopy and x-ray fluorescence imaging that can be used to identify the in situ speciation and distribution of trace elements in tissues, using our recent studies of bovine ovaries, where the distribution of Fe, Se, Zn, and bromine were determined. It also discusses the value of other techniques, such as inductively coupled plasma mass spectrometry, used to garner information about the concentrations and elemental state of the trace elements. These applications to measure trace elemental distributions in bovine ovaries at high resolutions provide new insights into possible roles for trace elements in the ovary. © 2016 by the Society for the Study of Reproduction, Inc.

  1. The Role of Visual and Semantic Properties in the Emergence of Category-Specific Patterns of Neural Response in the Human Brain.

    PubMed

    Coggan, David D; Baker, Daniel H; Andrews, Timothy J

    2016-01-01

    Brain-imaging studies have found distinct spatial and temporal patterns of response to different object categories across the brain. However, the extent to which these categorical patterns of response reflect higher-level semantic or lower-level visual properties of the stimulus remains unclear. To address this question, we measured patterns of EEG response to intact and scrambled images in the human brain. Our rationale for using scrambled images is that they have many of the visual properties found in intact images, but do not convey any semantic information. Images from different object categories (bottle, face, house) were briefly presented (400 ms) in an event-related design. A multivariate pattern analysis revealed categorical patterns of response to intact images emerged ∼80-100 ms after stimulus onset and were still evident when the stimulus was no longer present (∼800 ms). Next, we measured the patterns of response to scrambled images. Categorical patterns of response to scrambled images also emerged ∼80-100 ms after stimulus onset. However, in contrast to the intact images, distinct patterns of response to scrambled images were mostly evident while the stimulus was present (∼400 ms). Moreover, scrambled images were able to account only for all the variance in the intact images at early stages of processing. This direct manipulation of visual and semantic content provides new insights into the temporal dynamics of object perception and the extent to which different stages of processing are dependent on lower-level or higher-level properties of the image.

  2. A deep learning-based reconstruction of cosmic ray-induced air showers

    NASA Astrophysics Data System (ADS)

    Erdmann, M.; Glombitza, J.; Walz, D.

    2018-01-01

    We describe a method of reconstructing air showers induced by cosmic rays using deep learning techniques. We simulate an observatory consisting of ground-based particle detectors with fixed locations on a regular grid. The detector's responses to traversing shower particles are signal amplitudes as a function of time, which provide information on transverse and longitudinal shower properties. In order to take advantage of convolutional network techniques specialized in local pattern recognition, we convert all information to the image-like grid of the detectors. In this way, multiple features, such as arrival times of the first particles and optimized characterizations of time traces, are processed by the network. The reconstruction quality of the cosmic ray arrival direction turns out to be competitive with an analytic reconstruction algorithm. The reconstructed shower direction, energy and shower depth show the expected improvement in resolution for higher cosmic ray energy.

  3. Plants and microbes assisted selenium nanoparticles: characterization and application

    PubMed Central

    2014-01-01

    Selenium is an essential trace element and is an essential component of many enzymes without which they become inactive. The Se nanoparticles of varying shape and size may be synthesized from Se salts especially selenite and selenates in presence of reducing agents such as proteins, phenols, alcohols and amines. These biomolecules can be used to reduce Se salts in vitro but the byproducts released in the environment may be hazardous to flora and fauna. In this review, therefore, we analysed in depth, the biogenic synthesis of Se nanoparticles, their characterization and transformation into t- Se, m-Se, Se-nanoballs, Se-nanowires and Se-hollow spheres in an innocuous way preventing the environment from pollution. Their shape, size, FTIR, UV–vis, Raman spectra, SEM, TEM images and XRD pattern have been analysed. The weak forces involved in aggregation and transformation of one nano structure into the other have been carefully resolved. PMID:25128031

  4. Plants and microbes assisted selenium nanoparticles: characterization and application.

    PubMed

    Husen, Azamal; Siddiqi, Khwaja Salahuddin

    2014-08-16

    Selenium is an essential trace element and is an essential component of many enzymes without which they become inactive. The Se nanoparticles of varying shape and size may be synthesized from Se salts especially selenite and selenates in presence of reducing agents such as proteins, phenols, alcohols and amines. These biomolecules can be used to reduce Se salts in vitro but the byproducts released in the environment may be hazardous to flora and fauna. In this review, therefore, we analysed in depth, the biogenic synthesis of Se nanoparticles, their characterization and transformation into t- Se, m-Se, Se-nanoballs, Se-nanowires and Se-hollow spheres in an innocuous way preventing the environment from pollution. Their shape, size, FTIR, UV-vis, Raman spectra, SEM, TEM images and XRD pattern have been analysed. The weak forces involved in aggregation and transformation of one nano structure into the other have been carefully resolved.

  5. Single-Molecule Denaturation Mapping of DNA in Nanofluidic Channels

    NASA Astrophysics Data System (ADS)

    Reisner, Walter; Larsen, Niels; Silahtaroglu, Asli; Kristensen, Anders; Tommerup, Niels; Tegenfeldt, Jonas O.; Flyvbjerg, Henrik

    2010-03-01

    Nanochannel based DNA stretching can serve as a platform for a new optical mapping technique based on measuring the pattern of partial melting along the extended molecules. We partially melt DNA extended in nanofluidic channels via a combination of local heating and added chemical denaturants. The melted molecules, imaged via a standard fluorescence videomicroscopy setup, exhibit a nonuniform fluorescence profile corresponding to a series of local dips and peaks in the intensity trace along the stretched molecule. We show that this barcode is consistent with the presence of locally melted regions along the molecule and can be explained by calculations of sequence-dependent melting probability. Specifically, we obtain experimental melting profiles for T4, T7, lambda-phage and bacterial artificial chromosome DNA (from human chromosome 12) and compare these profiles to theory. In addition, we demonstrate that the BAC melting profile can be used to align the BAC to its correct position on chromosome 12.

  6. Reconstructing Early Industrial Contributions to Legacy Trace Metal Contamination in Southwestern Pennsylvania

    NASA Astrophysics Data System (ADS)

    Rossi, R.; Bain, D.; Hillman, A. L.; Pompeani, D. P.; Abbott, M. B.

    2015-12-01

    The remobilization of legacy contamination stored in floodplain sediments remains a threat to ecosystem and human health, particularly with potential changes in global precipitation patterns and flooding regimes. Vehicular and industrial emissions are often the dominant, recognized source of anthropogenic trace metal loadings to ecosystems today. However, loadings from early industrial activities are poorly characterized and potential sources of trace metal inputs. While potential trace metal contamination from these activities is recognized (e.g., the historical use of lead arsenate as a pesticide), the magnitude and distribution of legacy contamination is often unknown. This presentation reconstructs a lake sediment record of trace metal inputs from an oxbow lake in Southwestern Pennsylvania. Sediment cores were analyzed for major and trace metal chemistry, carbon to nitrogen ratios, bulk density, and magnetic susceptibility. Sediment trace metal chemistry in this approximately 250 year record (180 cm) record changes in land use and industry both in the 19th century and the 20th century. Of particular interest is early 19th century loadings of arsenic and calcium to the lake, likely attributable to pesticides and lime used in tanning processes near the lake. After this period of tanning dominated inputs, sediment barium concentrations rise, likely reflecting the onset of coal mining operations and resulting discharge of acid mine drainage to surface waters. In the 20th century portion of our record (70 -20 cm), patterns in sediment zinc, cadmium, and lead concentrations are dominated by the opening and closing of the nearby Donora Zinc Works and the American Steel & Wire Works, infamous facilities in the history of air quality regulation. The most recent sediment chemistry records periods include the enactment of air pollution legislation (~ 35 cm), and the phase out of tetraethyl leaded gasoline (~30 cm). Our study documents the impact of early industry in the Southwestern Pennsylvania region, as well as early industrial coal production/consumption on legacy trace metal contamination. This record suggests that some early industrial processes can rival more recent metal fluxes and should be carefully considered in modern assessments of legacy sediment metal contamination.

  7. A comparison of radiosity with current methods of sound level prediction in commercial spaces

    NASA Astrophysics Data System (ADS)

    Beamer, C. Walter, IV; Muehleisen, Ralph T.

    2002-11-01

    The ray tracing and image methods (and variations thereof) are widely used for the computation of sound fields in architectural spaces. The ray tracing and image methods are best suited for spaces with mostly specular reflecting surfaces. The radiosity method, a method based on solving a system of energy balance equations, is best applied to spaces with mainly diffusely reflective surfaces. Because very few spaces are either purely specular or purely diffuse, all methods must deal with both types of reflecting surfaces. A comparison of the radiosity method to other methods for the prediction of sound levels in commercial environments is presented. [Work supported by NSF.

  8. KSC-2013-2730

    NASA Image and Video Library

    2013-06-13

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit is moved from a hangar onto a transporter at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  9. KSC-2012-2821

    NASA Image and Video Library

    2012-05-11

    Vandenberg Air Force Base, Calif. – A truck carrying the third stage of the Orbital Sciences Pegasus XL rocket arrives at Vandenberg Air Force Base in California. NASA’s Interface Region Imaging Spectrograph, or IRIS, spacecraft will launch aboard the Pegasus XL in late 2012. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and heliosphere, or region around the sun. Photo credit: NASA/Randy Beaudoin

  10. KSC-2013-2731

    NASA Image and Video Library

    2013-06-13

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit is moved from a hangar onto a transporter at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  11. KSC-2013-2726

    NASA Image and Video Library

    2013-06-13

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit is moved from a hangar onto a transporter at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  12. KSC-2013-2733

    NASA Image and Video Library

    2013-06-13

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit is moved from a hangar onto a transporter at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  13. KSC-2013-2734

    NASA Image and Video Library

    2013-06-13

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit is moved from a hangar onto a transporter at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  14. KSC-2013-2732

    NASA Image and Video Library

    2013-06-13

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit is moved from a hangar onto a transporter at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  15. KSC-2013-2669

    NASA Image and Video Library

    2013-06-11

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit in June is seen in a hangar at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  16. KSC-2013-2668

    NASA Image and Video Library

    2013-06-11

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit in June is seen in a hangar at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  17. KSC-2012-2820

    NASA Image and Video Library

    2012-05-11

    Vandenberg Air Force Base, Calif. – A truck carrying all three stages of the Orbital Sciences Pegasus XL rocket arrives at Vandenberg Air Force Base in California. NASA’s Interface Region Imaging Spectrograph, or IRIS, spacecraft will launch aboard the Pegasus XL in late 2012. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and heliosphere, or region around the sun. Photo credit: NASA/Randy Beaudoin

  18. KSC-2013-2666

    NASA Image and Video Library

    2013-06-11

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit in June is seen in a hangar at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  19. KSC-2012-2826

    NASA Image and Video Library

    2012-05-11

    Vandenberg Air Force Base, Calif. – A truck carrying all three stages of the Orbital Sciences Pegasus XL rocket arrives at Vandenberg Air Force Base in California. NASA’s Interface Region Imaging Spectrograph, or IRIS, spacecraft will launch aboard the Pegasus XL in late 2012. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and heliosphere, or region around the sun. Photo credit: NASA/Randy Beaudoin

  20. KSC-2013-2665

    NASA Image and Video Library

    2013-06-11

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit in June is seen in a hangar at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  1. KSC-2013-2667

    NASA Image and Video Library

    2013-06-11

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit in June is seen in a hangar at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  2. KSC-2013-2727

    NASA Image and Video Library

    2013-06-13

    VANDENBERG ABF, Calif. - The Orbital Sciences Pegasus XL rocket that will lift NASA's IRIS solar observatory into orbit is moved from a hangar onto a transporter at Vandenberg Air Force Base. IRIS, short for Interface Region Imaging Spectrograph, is being prepared for launch from Vandenberg June 26. IRIS will open a new window of discovery by tracing the flow of energy and plasma through the chromospheres and transition region into the sun’s corona using spectrometry and imaging. IRIS fills a crucial gap in our ability to advance studies of the sun-to-Earth connection by tracing the flow of energy and plasma through the foundation of the corona and the region around the sun known as the heliosphere. Photo credit: VAFB/Randy Beaudoin

  3. Geometric calibration of Colour and Stereo Surface Imaging System of ESA's Trace Gas Orbiter

    NASA Astrophysics Data System (ADS)

    Tulyakov, Stepan; Ivanov, Anton; Thomas, Nicolas; Roloff, Victoria; Pommerol, Antoine; Cremonese, Gabriele; Weigel, Thomas; Fleuret, Francois

    2018-01-01

    There are many geometric calibration methods for "standard" cameras. These methods, however, cannot be used for the calibration of telescopes with large focal lengths and complex off-axis optics. Moreover, specialized calibration methods for the telescopes are scarce in literature. We describe the calibration method that we developed for the Colour and Stereo Surface Imaging System (CaSSIS) telescope, on board of the ExoMars Trace Gas Orbiter (TGO). Although our method is described in the context of CaSSIS, with camera-specific experiments, it is general and can be applied to other telescopes. We further encourage re-use of the proposed method by making our calibration code and data available on-line.

  4. AMOEBA clustering revisited. [cluster analysis, classification, and image display program

    NASA Technical Reports Server (NTRS)

    Bryant, Jack

    1990-01-01

    A description of the clustering, classification, and image display program AMOEBA is presented. Using a difficult high resolution aircraft-acquired MSS image, the steps the program takes in forming clusters are traced. A number of new features are described here for the first time. Usage of the program is discussed. The theoretical foundation (the underlying mathematical model) is briefly presented. The program can handle images of any size and dimensionality.

  5. History of imaging in orthodontics from Broadbent to cone-beam computed tomography.

    PubMed

    Hans, Mark G; Palomo, J Martin; Valiathan, Manish

    2015-12-01

    The history of imaging and orthodontics is a story of technology informing biology. Advances in imaging changed our thinking as our understanding of craniofacial growth and the impact of orthodontic treatment deepened. This article traces the history of imaging in orthodontics from the invention of the cephalometer by B. Holly Broadbent in 1930 to the introduction of low-cost, low-radiation-dose cone-beam computed tomography imaging in 2015. Copyright © 2015 American Association of Orthodontists. Published by Elsevier Inc. All rights reserved.

  6. Three-dimensional imaging of the craniofacial complex.

    PubMed

    Nguyen, Can X.; Nissanov, Jonathan; Öztürk, Cengizhan; Nuveen, Michiel J.; Tuncay, Orhan C.

    2000-02-01

    Orthodontic treatment requires the rearrangement of craniofacial complex elements in three planes of space, but oddly the diagnosis is done with two-dimensional images. Here we report on a three-dimensional (3D) imaging system that employs the stereoimaging method of structured light to capture the facial image. The images can be subsequently integrated with 3D cephalometric tracings derived from lateral and PA films (www.clinorthodres.com/cor-c-070). The accuracy of the reconstruction obtained with this inexpensive system is about 400 µ.

  7. Nickel-iron spherules in tektites - Non-meteoritic in origin

    NASA Technical Reports Server (NTRS)

    Ganapathy, R.; Larimer, J. W.

    1983-01-01

    The concentrations of several diagnostic trace elements were determined in two comparatively large NiFe spherules extracted from tektites. The purpose of the study was to obtain some clues about the chemistry of the projectile that is presumed responsible for the formation of these tektites. However, the trace element pattern is distinctly terrestrial implying that the spherules are the result of in-situ reduction of the host rock and are not meteoritic in origin.

  8. Visual Information-Processing in the Perception of Features and Objects

    DTIC Science & Technology

    1989-01-05

    or nodes in a semantic memory network, whereas recall and recognition depend on separate episodic memory traces. In our experiment, we used the same...problem for the account in terms of the separation of episodic from semantic memory , since no pre- existing representations of our line patterns were... semantic memory : amnesic patients were thought to have lost the ability to lay down (or retrieve) episodic traces of autobiographical events, but had

  9. Jupiter's Northern Hemisphere in Violet Light (Time Set 3)

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Mosaic of Jupiter's northern hemisphere between 10 and 50 degrees latitude. Jupiter's atmospheric circulation is dominated by alternating eastward and westward jets from equatorial to polar latitudes. The direction and speed of these jets in part determine the color and texture of the clouds seen in this mosaic. Also visible are several other common Jovian cloud features, including large white ovals, bright spots, dark spots, interacting vortices, and turbulent chaotic systems. The north-south dimension of each of the two interacting vortices in the upper half of the mosaic is about 3500 kilometers. Light at 410 nanometers is affected by the sizes and compositions of cloud particles, as well as the trace chemicals that give Jupiter's clouds their colors. This mosaic shows the features of Jupiter's main visible cloud deck and the hazy cloud layer above it.

    North is at the top. The images are projected on a sphere, with features being foreshortened towards the north. The planetary limb runs along the right edge of the mosaic. Cloud patterns appear foreshortened as they approach the limb. The smallest resolved features are tens of kilometers in size. These images were taken on April 3, 1997, at a range of 1.4 million kilometers by the Solid State Imaging system (CCD) on NASA's Galileo spacecraft.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov. Background information and educational context for the images can be found at URL http://www.jpl.nasa.gov/galileo/sepo

  10. Optical Potential Field Mapping System

    NASA Technical Reports Server (NTRS)

    Reid, Max B. (Inventor)

    1996-01-01

    The present invention relates to an optical system for creating a potential field map of a bounded two dimensional region containing a goal location and an arbitrary number of obstacles. The potential field mapping system has an imaging device and a processor. Two image writing modes are used by the imaging device, electron deposition and electron depletion. Patterns written in electron deposition mode appear black and expand. Patterns written in electron depletion mode are sharp and appear white. The generated image represents a robot's workspace. The imaging device under processor control then writes a goal location in the work-space using the electron deposition mode. The black image of the goal expands in the workspace. The processor stores the generated images, and uses them to generate a feedback pattern. The feedback pattern is written in the workspace by the imaging device in the electron deposition mode to enhance the expansion of the original goal pattern. After the feedback pattern is written, an obstacle pattern is written by the imaging device in the electron depletion mode to represent the obstacles in the robot's workspace. The processor compares a stored image to a previously stored image to determine a change therebetween. When no change occurs, the processor averages the stored images to produce the potential field map.

  11. Comparison of in vivo and ex vivo imaging of the microvasculature with 2-photon fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Steinman, Joe; Koletar, Margaret; Stefanovic, Bojana; Sled, John G.

    2016-03-01

    This study evaluates 2-Photon fluorescence microscopy of in vivo and ex vivo cleared samples for visualizing cortical vasculature. Four mice brains were imaged with in vivo 2PFM. Mice were then perfused with a FITC gel and cleared in fructose. The same regions imaged in vivo were imaged ex vivo. Vessels were segmented automatically in both images using an in-house developed algorithm that accounts for the anisotropic and spatially varying PSF ex vivo. Through non-linear warping, the ex vivo image and tracing were aligned to the in vivo image. The corresponding vessels were identified through a local search algorithm. This enabled comparison of identical vessels in vivo/ex vivo. A similar process was conducted on the in vivo tracing to determine the percentage of vessels perfused. Of all the vessels identified over the four brains in vivo, 98% were present ex vivo. There was a trend towards reduced vessel diameter ex vivo by 12.7%, and the shrinkage varied between specimens (0% to 26%). Large diameter surface vessels, through a process termed 'shadowing', attenuated in vivo signal from deeper cortical vessels by 40% at 300 μm below the cortical surface, which does not occur ex vivo. In summary, though there is a mean diameter shrinkage ex vivo, ex vivo imaging has a reduced shadowing artifact. Additionally, since imaging depths are only limited by the working distance of the microscope objective, ex vivo imaging is more suitable for imaging large portions of the brain.

  12. Lymphatic imaging in unsedated infants and children

    NASA Astrophysics Data System (ADS)

    Rasmussen, John C.; Balaguru, Duraisamy; Douglas, William I.; Breinholt, John P.; Greives, Matthew R.; Aldrich, Melissa B.; Sevick-Muraca, Eva M.

    2017-02-01

    Primary lymphedema and lymphatic malformations in the pediatric population remains poorly diagnosed and misunderstood due to a lack of information on the underlying anatomy and function of the lymphatic system. Diagnostics for the lymphatic vasculature are limited, consisting of lymphoscintigraphy or invasive lymphangiography, both of which require sedation that can restrict use in infants and children. As a result, therapeutic protocols for pediatric patients with lymphatic disorders remain sparse and with little evidence to support them. Because near-infrared fluorescence (NIRF) imaging enables image acquisition on the order of tenths of seconds with trace administration of fluorescent dye, sedation is not necessary. The lack of harmful radiation and radioactive contrast agents further facilitates imaging. Herein we summarize our experiences in imaging infants and children who are suspected to have disorders of the lymphatic vascular system using indocyanine green (ICG) and who have developed chylothorax following surgery for congenital heart defects. The results show both anatomical as well as functional lymphatic deficits in children with congenital disease. In the future, NIRF lymphatic imaging could provide new opportunities to tailor effective therapies and monitor responses. The opportunity to use expand NIRF imaging for pediatric diagnostics beyond the lymphatic vasculature is also afforded by the rapid acquisition following trace administration of NIRF contrast agent.

  13. In vivo metabolic fingerprinting of neutral lipids with hyperspectral stimulated Raman scattering microscopy.

    PubMed

    Fu, Dan; Yu, Yong; Folick, Andrew; Currie, Erin; Farese, Robert V; Tsai, Tsung-Huang; Xie, Xiaoliang Sunney; Wang, Meng C

    2014-06-18

    Metabolic fingerprinting provides valuable information on the physiopathological states of cells and tissues. Traditional imaging mass spectrometry and magnetic resonance imaging are unable to probe the spatial-temporal dynamics of metabolites at the subcellular level due to either lack of spatial resolution or inability to perform live cell imaging. Here we report a complementary metabolic imaging technique that is based on hyperspectral stimulated Raman scattering (hsSRS). We demonstrated the use of hsSRS imaging in quantifying two major neutral lipids: cholesteryl ester and triacylglycerol in cells and tissues. Our imaging results revealed previously unknown changes of lipid composition associated with obesity and steatohepatitis. We further used stable-isotope labeling to trace the metabolic dynamics of fatty acids in live cells and live Caenorhabditis elegans with hsSRS imaging. We found that unsaturated fatty acid has preferential uptake into lipid storage while saturated fatty acid exhibits toxicity in hepatic cells. Simultaneous metabolic fingerprinting of deuterium-labeled saturated and unsaturated fatty acids in living C. elegans revealed that there is a lack of interaction between the two, unlike previously hypothesized. Our findings provide new approaches for metabolic tracing of neutral lipids and their precursors in living cells and organisms, and could potentially serve as a general approach for metabolic fingerprinting of other metabolites.

  14. Digital image forensics for photographic copying

    NASA Astrophysics Data System (ADS)

    Yin, Jing; Fang, Yanmei

    2012-03-01

    Image display technology has greatly developed over the past few decades, which make it possible to recapture high-quality images from the display medium, such as a liquid crystal display(LCD) screen or a printed paper. The recaptured images are not regarded as a separate image class in the current research of digital image forensics, while the content of the recaptured images may have been tempered. In this paper, two sets of features based on the noise and the traces of double JPEG compression are proposed to identify these recaptured images. Experimental results showed that our proposed features perform well for detecting photographic copying.

  15. SU-E-J-189: Determination of Markerless Lung Tumor Position in Real Time: A Feasibility Study Using a Novel Tomo-Cinegraphy Imaging

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Yi, B; Hu, E; Yu, C

    2015-06-15

    Purpose: A Tomo-Cinegraphy (TC) is a method to generate a series of temporal tomographic images from projection images of the on-board imager (OBI) while gantry is moving. It is to test if this technique is useful to determine a lung tumor position during treatments. Methods: Tomographic image via background subtraction, TIBS uses a priori anatomical information from a previous CT scan to isolate a SOI from a planar kV image by factoring out the attenuations by tissues outside the SOI (background). This idea was extended to a TC, which enables to generate tomographic images of same geometry from the projectionmore » of different gantry angles and different breathing phases. Projection images of a lung patient for CBCT acquisition are used to generate TC images. A region of interest (ROI) is selected around a tumor adding 2cm margins. Center of mass (COM) of the ROI is traced to determine tumor position for every projection images. Results: Tumor is visible in the TC images while the OBI projections are not. The coordinates of the COMs represent the temporal tumor positions. While, it is not possible to trace the tumor motion using the projection images. A source of time delay is the time to acquire projection images, which is always less than a second. Conclusion: TC allows tracking the tumor positions without fiducial markers in real time for some lung patients, if the projection images are acquired during treatments. Partially supported by NIH R01CA133539.« less

  16. Generation algorithm of craniofacial structure contour in cephalometric images

    NASA Astrophysics Data System (ADS)

    Mondal, Tanmoy; Jain, Ashish; Sardana, H. K.

    2010-02-01

    Anatomical structure tracing on cephalograms is a significant way to obtain cephalometric analysis. Computerized cephalometric analysis involves both manual and automatic approaches. The manual approach is limited in accuracy and repeatability. In this paper we have attempted to develop and test a novel method for automatic localization of craniofacial structure based on the detected edges on the region of interest. According to the grey scale feature at the different region of the cephalometric images, an algorithm for obtaining tissue contour is put forward. Using edge detection with specific threshold an improved bidirectional contour tracing approach is proposed by an interactive selection of the starting edge pixels, the tracking process searches repetitively for an edge pixel at the neighborhood of previously searched edge pixel to segment images, and then craniofacial structures are obtained. The effectiveness of the algorithm is demonstrated by the preliminary experimental results obtained with the proposed method.

  17. Simulations and experiments of aperiodic and multiplexed gratings in volume holographic imaging systems

    PubMed Central

    Luo, Yuan; Castro, Jose; Barton, Jennifer K.; Kostuk, Raymond K.; Barbastathis, George

    2010-01-01

    A new methodology describing the effects of aperiodic and multiplexed gratings in volume holographic imaging systems (VHIS) is presented. The aperiodic gratings are treated as an ensemble of localized planar gratings using coupled wave methods in conjunction with sequential and non-sequential ray-tracing techniques to accurately predict volumetric diffraction effects in VHIS. Our approach can be applied to aperiodic, multiplexed gratings and used to theoretically predict the performance of multiplexed volume holographic gratings within a volume hologram for VHIS. We present simulation and experimental results for the aperiodic and multiplexed imaging gratings formed in PQ-PMMA at 488nm and probed with a spherical wave at 633nm. Simulation results based on our approach that can be easily implemented in ray-tracing packages such as Zemax® are confirmed with experiments and show proof of consistency and usefulness of the proposed models. PMID:20940823

  18. Use of axonal projection patterns for the homologisation of cerebral nerves in Opisthobranchia, Mollusca and Gastropoda

    PubMed Central

    2013-01-01

    Introduction Gastropoda are guided by several sensory organs in the head region, referred to as cephalic sensory organs (CSOs). These CSOs are innervated by distinct nerves. This study proposes a unified terminology for the cerebral nerves and the categories of CSOs and then investigates the neuroanatomy and cellular innervation patterns of these cerebral nerves, in order to homologise them. The homologisation of the cerebral nerves in conjunction with other data, e.g. ontogenetic development or functional morphology, may then provide insights into the homology of the CSOs themselves. Results Nickel-lysine axonal tracing (“backfilling”) was used to stain the somata projecting into specific nerves in representatives of opisthobranch Gastropoda. Tracing patterns revealed the occurrence, size and relative position of somata and their axons and enabled these somata to be mapped to specific cell clusters. Assignment of cells to clusters followed a conservative approach based primarily on relative location of the cells. Each of the four investigated cerebral nerves could be uniquely identified due to a characteristic set of soma clusters projecting into the respective nerves via their axonal pathways. Conclusions As the described tracing patterns are highly conserved morphological characters, they can be used to homologise nerves within the investigated group of gastropods. The combination of adequate number of replicates and a comparative approach allows us to provide preliminary hypotheses on homologies for the cerebral nerves. Based on the hypotheses regarding cerebral nerve homology together with further data on ultrastructure and immunohistochemistry of CSOs published elsewhere, we can propose preliminary hypotheses regarding homology for the CSOs of the Opisthobranchia themselves. PMID:23597272

  19. A multidisciplinary approach to trace Asian dust storms from source to sink

    NASA Astrophysics Data System (ADS)

    Yan, Yan; Sun, Youbin; Ma, Long; Long, Xin

    2015-03-01

    Tracing the source of dust storm (DS) in mega-cities of northern China currently suffers ambiguities from different approaches including source-sink proxy comparison, air mass back trajectory modeling, and satellite image monitoring. By integrating advantages of all three methods, we present a multidisciplinary approach to trace the provenance of dust fall in Xi'an during the spring season (March to May) of 2012. We collected daily dust fall to calculate dust flux variation, and detected eight DS events with remarkable high flux values based on meteorological comparison and extreme detection algorithm. By combining MODIS images and accompanying real-time air mass back trajectories, we attribute four of them as natural DS events and the other four as anthropogenic DS events, suggesting the importance of natural and anthropogenic processes in supplying long-range transported dust. The primary sources of these DS events were constrained to three possible areas, including the northern Chinese deserts, Taklimakan desert, and Gurbantunggut desert. Proxy comparisons based upon the quartz crystallinity index and oxygen isotope further confirmed the source-to-sink linkage between the natural DS events in Xi'an and the dust emissions from the northern Chinese deserts. The integration of geochemical and meteorological tracing approaches favors the dominant contribution of short-distance transportation of modern dust fall on the Chinese Loess Plateau. Our study shows that the multidisciplinary approach could permit a better source identification of modern dust and should be applied properly for tracing the provenance fluctuations of geological dust deposits.

  20. Stages of weathering mantle formation from carbonate rocks in the light of rare earth elements (REE) and Sr-Nd-Pb isotopes

    NASA Astrophysics Data System (ADS)

    Hissler, Christophe; Stille, Peter

    2015-04-01

    Weathering mantles are widespread and include lateritic, sandy and kaolinite-rich saprolites and residuals of partially dissolved rocks. These old regolith systems have a complex history of formation and may present a polycyclic evolution due to successive geological and pedogenetic processes that affected the profile. Until now, only few studies highlighted the unusual high content of associated trace elements in weathering mantles originating from carbonate rocks, which have been poorly studied, compared to those developing on magmatic bedrocks. For instance, these enrichments can be up to five times the content of the underlying carbonate rocks. However, these studies also showed that the carbonate bedrock content only partially explains the soil enrichment for all the considered major and trace elements. Up to now, neither soil, nor saprolite formation has to our knowledge been geochemically elucidated. Therefore, the aim of this study was to examine more closely the soil forming dynamics and the relationship of the chemical soil composition to potential sources. REE distribution patterns and Sr-Nd-Pb isotope ratios have been used because they are particularly well suited to identify trace element migration, to recognize origin and mixing processes and, in addition, to decipher possible anthropogenic and/or "natural" atmosphere-derived contributions to the soil. Moreover, leaching experiments have been applied to identify mobile phases in the soil system and to yield information on the stability of trace elements and especially on their behaviour in these Fe-enriched carbonate systems. All these geochemical informations indicate that the cambisol developing on such a typical weathering mantle ("terra fusca") has been formed through weathering of a condensed Bajocian limestone-marl facies. This facies shows compared to average world carbonates important trace element enrichments. Their trace element distribution patterns are similar to those of the soil suggesting their close genetic relationships. Sr-Nd-Pb isotope data allow to identify four principal components in the soil: a silicate-rich pool at close to the surface, a leachable REE enriched pool at the bottom of the soil profile, the limestone facies on which the weathering profile developed and an anthropogenic, atmosphere-derived component detected in the soil leachates of the uppermost soil horizon. The leachable phases are mainly secondary carbonate-bearing REE phases such as bastnaesite. The isotope data and trace element distribution patterns indicate that at least four geological and environmental events impacted the chemical and isotopical compositions of the soil system since the Cretaceous.

  1. Visual Pattern Analysis in Histopathology Images Using Bag of Features

    NASA Astrophysics Data System (ADS)

    Cruz-Roa, Angel; Caicedo, Juan C.; González, Fabio A.

    This paper presents a framework to analyse visual patterns in a collection of medical images in a two stage procedure. First, a set of representative visual patterns from the image collection is obtained by constructing a visual-word dictionary under a bag-of-features approach. Second, an analysis of the relationships between visual patterns and semantic concepts in the image collection is performed. The most important visual patterns for each semantic concept are identified using correlation analysis. A matrix visualization of the structure and organization of the image collection is generated using a cluster analysis. The experimental evaluation was conducted on a histopathology image collection and results showed clear relationships between visual patterns and semantic concepts, that in addition, are of easy interpretation and understanding.

  2. The plasma filling factor of coronal bright points. II. Combined EIS and TRACE results

    NASA Astrophysics Data System (ADS)

    Dere, K. P.

    2009-04-01

    Aims: In a previous paper, the volumetric plasma filling factor of coronal bright points was determined from spectra obtained with the Extreme ultraviolet Imaging Spectrometer (EIS). The analysis of these data showed that the median plasma filling factor was 0.015. One interpretation of this result was that the small filling factor was consistent with a single coronal loop with a width of 1-2´´, somewhat below the apparent width. In this paper, higher spatial resolution observations with the Transition Region and Corona Explorer (TRACE) are used to test this interpretation. Methods: Rastered spectra of regions of the quiet Sun were recorded by the EIS during operations with the Hinode satellite. Many of these regions were simultaneously observed with TRACE. Calibrated intensities of Fe xii lines were obtained and images of the quiet corona were constructed from the EIS measurements. Emission measures were determined from the EIS spectra and geometrical widths of coronal bright points were obtained from the TRACE images. Electron densities were determined from density-sensitive line ratios measured with EIS. A comparison of the emission measure and bright point widths with the electron densities yielded the plasma filling factor. Results: The median electron density of coronal bright points is 3 × 109 cm-3 at a temperature of 1.6 × 106 K. The volumetric plasma filling factor of coronal bright points was found to vary from 3 × 10-3 to 0.3 with a median value of 0.04. Conclusions: The current set of EIS and TRACE coronal bright-point observations indicate the median value of their plasma filling factor is 0.04. This can be interpreted as evidence of a considerable subresolution structure in coronal bright points or as the result of a single completely filled plasma loop with widths on the order of 0.2-1.5´´ that has not been spatially resolved in these measurements.

  3. Chondrule heritage and thermal histories from trace element and oxygen isotope analyses of chondrules and amoeboid olivine aggregates

    NASA Astrophysics Data System (ADS)

    Jacquet, Emmanuel; Marrocchi, Yves

    2017-12-01

    We report combined oxygen isotope and mineral-scale trace element analyses of amoeboid olivine aggregates (AOA) and chondrules in ungrouped carbonaceous chondrite, Northwest Africa 5958. The trace element geochemistry of olivine in AOA, for the first time measured by LA-ICP-MS, is consistent with a condensation origin, although the shallow slope of its rare earth element (REE) pattern is yet to be physically explained. Ferromagnesian silicates in type I chondrules resemble those in other carbonaceous chondrites both geochemically and isotopically, and we find a correlation between 16O enrichment and many incompatible elements in olivine. The variation in incompatible element concentrations may relate to varying amounts of olivine crystallization during a subisothermal stage of chondrule-forming events, the duration of which may be anticorrelated with the local solid/gas ratio if this was the determinant of oxygen isotopic ratios as proposed recently. While aqueous alteration has depleted many chondrule mesostases in REE, some chondrules show recognizable subdued group II-like patterns supporting the idea that the immediate precursors of chondrules were nebular condensates.

  4. Influence of carbon monoxide poisoning on the fetal heart monitor tracing: a report of 3 cases.

    PubMed

    Towers, Craig V; Corcoran, Vincent A

    2009-03-01

    The diagnosis of carbon monoxide poisoning in the third trimester of pregnancy requires an index of suspicion, and the appearance of the fetal heart monitor tracing may help in this regard. Three cases of third-trimester acute carbon monoxide poisoning occurred. In each pregnancy, the fetal heart monitor tracing on admission was correlated with the maternal carboxyhemoglobin level, and how the pattern changed following the institution of therapy was analyzed. In all 3 cases, the initial fetal heart rate pattern demonstrated decreased variability with an elevated baseline and an absence of accelerations and decelerations. Within 45-90 minutes of treatment onset, the baseline fetal heart rate dropped by 20-40 beats per minute, the variability became moderate, and accelerations occurred. Absent accelerations with minimal variability, if caused by uteroplacental insufficiency, are usually preceded by recurrent decelerations. Absent accelerations with minimal variability in the absence of recurrent decelerations may suggest another cause, of which carbon monoxide intoxication can be added to the differential, especially since this disorder often has nonspecific clinical symptoms.

  5. Radon-domain interferometric interpolation for reconstruction of the near-offset gap in marine seismic data

    NASA Astrophysics Data System (ADS)

    Xu, Zhuo; Sopher, Daniel; Juhlin, Christopher; Han, Liguo; Gong, Xiangbo

    2018-04-01

    In towed marine seismic data acquisition, a gap between the source and the nearest recording channel is typical. Therefore, extrapolation of the missing near-offset traces is often required to avoid unwanted effects in subsequent data processing steps. However, most existing interpolation methods perform poorly when extrapolating traces. Interferometric interpolation methods are one particular method that have been developed for filling in trace gaps in shot gathers. Interferometry-type interpolation methods differ from conventional interpolation methods as they utilize information from several adjacent shot records to fill in the missing traces. In this study, we aim to improve upon the results generated by conventional time-space domain interferometric interpolation by performing interferometric interpolation in the Radon domain, in order to overcome the effects of irregular data sampling and limited source-receiver aperture. We apply both time-space and Radon-domain interferometric interpolation methods to the Sigsbee2B synthetic dataset and a real towed marine dataset from the Baltic Sea with the primary aim to improve the image of the seabed through extrapolation into the near-offset gap. Radon-domain interferometric interpolation performs better at interpolating the missing near-offset traces than conventional interferometric interpolation when applied to data with irregular geometry and limited source-receiver aperture. We also compare the interferometric interpolated results with those obtained using solely Radon transform (RT) based interpolation and show that interferometry-type interpolation performs better than solely RT-based interpolation when extrapolating the missing near-offset traces. After data processing, we show that the image of the seabed is improved by performing interferometry-type interpolation, especially when Radon-domain interferometric interpolation is applied.

  6. A Jovian Hotspot in True and False Colors (Time set 3)

    NASA Technical Reports Server (NTRS)

    1997-01-01

    True and false color views of an equatorial 'hotspot' on Jupiter. These images cover an area 34,000 kilometers by 11,000 kilometers. The top mosaic combines the violet (410 nanometers or nm) and near-infrared continuum (756 nm) filter images to create an image similar to how Jupiter would appear to human eyes. Differences in coloration are due to the composition and abundances of trace chemicals in Jupiter's atmosphere. The bottom mosaic uses Galileo's three near-infrared wavelengths (756 nm, 727 nm, and 889 nm displayed in red, green, and blue) to show variations in cloud height and thickness. Bluish clouds are high and thin, reddish clouds are low, and white clouds are high and thick. The dark blue hotspot in the center is a hole in the deep cloud with an overlying thin haze. The light blue region to the left is covered by a very high haze layer. The multicolored region to the right has overlapping cloud layers of different heights. Galileo is the first spacecraft to distinguish cloud layers on Jupiter.

    North is at the top. The mosaics cover latitudes 1 to 10 degrees and are centered at longitude 336 degrees West. The planetary limb runs along the right edge of the image. Cloud patterns appear foreshortened as they approach the limb. The smallest resolved features are tens of kilometers in size. These images were taken on December 17, 1996, at a range of 1.5 million kilometers by the Solid State Imaging system aboard NASA's Galileo spacecraft.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov. Background information and educational context for the images can be found at URL http://www.jpl.nasa.gov/galileo/sepo

  7. On the direct acquisition of beam’s-eye-view images in MRI for integration with external beam radiotherapy

    NASA Astrophysics Data System (ADS)

    Wachowicz, K.; Murray, B.; Fallone, B. G.

    2018-06-01

    The recent interest in the integration of external beam radiotherapy with a magnetic resonance (MR) imaging unit offers the potential for real-time adaptive tumour tracking during radiation treatment. The tracking of large tumours which follow a rapid trajectory may best be served by the generation of a projection image from the perspective of the beam source, or ‘beam’s eye view’ (BEV). This type of image projection represents the path of the radiation beam, thus enabling rapid compensations for target translations, rotations and deformations, as well time-dependent critical structure avoidance. MR units have been traditionally incapable of this type of imaging except through lengthy 3D acquisitions and ray tracing procedures. This work investigates some changes to the traditional MR scanner architecture that would permit the direct acquisition of a BEV image suitable for integration with external beam radiotherapy. Based on the theory presented in this work, a phantom was imaged with nonlinear encoding-gradient field patterns to demonstrate the technique. The phantom was constructed with agarose gel tubes spaced two cm apart at their base and oriented to converge towards an imaginary beam source 100 cm away. A corresponding virtual phantom was also created and subjected to the same encoding technique as in the physical demonstration, allowing the method to be tested without hardware limitations. The experimentally acquired and simulated images indicate the feasibility of the technique, showing a substantial amount of blur reduction in a diverging phantom compared to the conventional imaging geometry, particularly with the nonlinear gradients ideally implemented. The theory is developed to demonstrate that the method can be adapted in a number of different configurations to accommodate all proposed integration schemes for MR units and radiotherapy sources. Depending on the configuration, the implementation of this technique will require between two and four additional nonlinear encoding coils.

  8. Modeling of Field-Aligned Guided Echoes in the Plasmasphere

    NASA Technical Reports Server (NTRS)

    Fung, Shing F.; Green, James L.

    2004-01-01

    The conditions under which high frequency (f>>f(sub uh)) long-range extraordinary-mode discrete field-aligned echoes observed by the Radio Plasma Imager (RPI) on board the Imager for Magnetopause-to-Aurora Global Exploration (IMAGE) satellite in the plasmasphere are investigated by ray tracing modeling. Field-aligned discrete echoes are most commonly observed by RPI in the plasmasphere although they are also observed over the polar cap region. The plasmasphere field-aligned echoes appearing as multiple echo traces at different virtual ranges are attributed to signals reflected successively between conjugate hemispheres that propagate along or nearly along closed geomagnetic field lines. The ray tracing simulations show that field-aligned ducts with as little as 1% density perturbations (depletions) and less than 10 wavelengths wide can guide nearly field-aligned propagating high frequency X mode waves. Effective guidance of wave at a given frequency and wave normal angle (Psi) depends on the cross-field density scale of the duct, such that ducts with stronger density depletions need to be wider in order to maintain the same gradient of refractive index across the magnetic field. While signal guidance by field aligned density gradient without ducting is possible only over the polar region, conjugate field-aligned echoes that have traversed through the equatorial region are most likely guided by ducting.

  9. Detection of latent fingerprints by ultraviolet spectral imaging

    NASA Astrophysics Data System (ADS)

    Huang, Wei; Xu, Xiaojing; Wang, Guiqiang

    2013-12-01

    Spectral imaging technology research is becoming more popular in the field of forensic science. Ultraviolet spectral imaging technology is an especial part of the full spectrum of imaging technology. This paper finished the experiment contents of the ultraviolet spectrum imaging method and image acquisition system based on ultraviolet spectral imaging technology. Ultraviolet spectral imaging experiments explores a wide variety of ultraviolet reflectance spectra of the object material curve and its ultraviolet spectrum of imaging modalities, can not only gives a reference for choosing ultraviolet wavelength to show the object surface potential traces of substances, but also gives important data for the ultraviolet spectrum of imaging technology development.

  10. Latino Film and Video Images.

    ERIC Educational Resources Information Center

    Vazquez, Blanca, Ed.

    1990-01-01

    This theme issue of the "Centro Bulletin" examines media stereotypes of Latinos and presents examples of alternatives. "From Assimilation to Annihilation: Puerto Rican Images in U.S. Films" (R. Perez) traces the representation of Puerto Ricans from the early days of television to the films of the 1970s. "The Latino 'Boom'…

  11. Western Film Images of Africa: Genealogy of an Ideological Formulation.

    ERIC Educational Resources Information Center

    Ukadike, N. Frank

    1990-01-01

    For many years, the dominant image of Africa seen on Western films was that of condescension and paternalism. The history of films about Africa, with some exceptions to the prevailing portrayals, is traced; and the origin and growth of the African film industry are reviewed. (SLD)

  12. Higher-Order Optical Modes and Nanostructures for Detection and Imaging Applications

    NASA Astrophysics Data System (ADS)

    Schultz, Zachary D.; Levin, Ira W.

    2010-08-01

    Raman spectroscopy offers a label-free, chemically specific, method of detecting molecules; however, the low cross-section attendant to this scattering process has hampered trace detection. The realization that scattering is enhanced at a metallic surface has enabled new techniques for spectroscopic and imaging analysis.

  13. Apparatus and method for a light direction sensor

    NASA Technical Reports Server (NTRS)

    Leviton, Douglas B. (Inventor)

    2011-01-01

    The present invention provides a light direction sensor for determining the direction of a light source. The system includes an image sensor; a spacer attached to the image sensor, and a pattern mask attached to said spacer. The pattern mask has a slit pattern that as light passes through the slit pattern it casts a diffraction pattern onto the image sensor. The method operates by receiving a beam of light onto a patterned mask, wherein the patterned mask as a plurality of a slit segments. Then, diffusing the beam of light onto an image sensor and determining the direction of the light source.

  14. Posterior Cord Syndrome and Trace Elements Deficiency as an Uncommon Presentation of Common Variable Immunodeficiency

    PubMed Central

    dos Santos Mota, Ananda; Morais Monteiro, Priscila; Carvalho, Angela Cristina Gouvêa; Fernandes Diniz, Barbara; Gemal Lanzieri, Pedro; Carneiro Ramos, Ricardo; Mocarzel, Luis Otavio

    2017-01-01

    Diarrhea is one of the most common symptoms in common variable immunodeficiency, but neurologic manifestations are rare. We presented a 50-year-old woman with recurrent diarrhea and severe weight loss that developed a posterior cord syndrome. Endoscopy found a duodenal villous blunting, intraepithelial lymphocytosis, and lack of plasma cells and magnetic resonance imaging of the spine was normal. Laboratory assays confirmed common variable immunodeficiency syndrome and showed low levels of trace elements (copper and zinc). Treatment was initiated with parenteral replacement of trace elements and intravenous human immunoglobulin and the patient improved clinically. In conclusion, physicians must be aware that gastrointestinal and neurologic disorders may be related to each other and remember to request trace elements laboratory assessment. PMID:28356913

  15. Image Processing for Planetary Limb/Terminator Extraction

    NASA Technical Reports Server (NTRS)

    Udomkesmalee, S.; Zhu, D. Q.; Chu, C. -C.

    1995-01-01

    A novel image segmentation technique for extracting limb and terminator of planetary bodies is proposed. Conventional edge- based histogramming approaches are used to trace object boundaries. The limb and terminator bifurcation is achieved by locating the harmonized segment in the two equations representing the 2-D parameterized boundary curve. Real planetary images from Voyager 1 and 2 served as representative test cases to verify the proposed methodology.

  16. Rare earth elements minimal harvest year variation facilitates robust geographical origin discrimination: The case of PDO "Fava Santorinis".

    PubMed

    Drivelos, Spiros A; Danezis, Georgios P; Haroutounian, Serkos A; Georgiou, Constantinos A

    2016-12-15

    This study examines the trace and rare earth elemental (REE) fingerprint variations of PDO (Protected Designation of Origin) "Fava Santorinis" over three consecutive harvesting years (2011-2013). Classification of samples in harvesting years was studied by performing discriminant analysis (DA), k nearest neighbours (κ-NN), partial least squares (PLS) analysis and probabilistic neural networks (PNN) using rare earth elements and trace metals determined using ICP-MS. DA performed better than κ-NN, producing 100% discrimination using trace elements and 79% using REEs. PLS was found to be superior to PNN, achieving 99% and 90% classification for trace and REEs, respectively, while PNN achieved 96% and 71% classification for trace and REEs, respectively. The information obtained using REEs did not enhance classification, indicating that REEs vary minimally per harvesting year, providing robust geographical origin discrimination. The results show that seasonal patterns can occur in the elemental composition of "Fava Santorinis", probably reflecting seasonality of climate. Copyright © 2016 Elsevier Ltd. All rights reserved.

  17. How healthy is urban horticulture in high traffic areas? Trace metal concentrations in vegetable crops from plantings within inner city neighbourhoods in Berlin, Germany.

    PubMed

    Säumel, Ina; Kotsyuk, Iryna; Hölscher, Marie; Lenkereit, Claudia; Weber, Frauke; Kowarik, Ingo

    2012-06-01

    Food production by urban dwellers is of growing importance in developing and developed countries. Urban horticulture is associated with health risks as crops in urban settings are generally exposed to higher levels of pollutants than those in rural areas. We determined the concentration of trace metals in the biomass of different horticultural crops grown in the inner city of Berlin, Germany, and analysed how the local setting shaped the concentration patterns. We revealed significant differences in trace metal concentrations depending on local traffic, crop species, planting style and building structures, but not on vegetable type. Higher overall traffic burden increased trace metal content in the biomass. The presence of buildings and large masses of vegetation as barriers between crops and roads reduced trace metal content in the biomass. Based on this we discuss consequences for urban horticulture, risk assessment, and planting and monitoring guidelines for cultivation and consumption of crops. Copyright © 2012 Elsevier Ltd. All rights reserved.

  18. Trace metal depositional patterns from an open pit mining activity as revealed by archived avian gizzard contents.

    PubMed

    Bendell, L I

    2011-02-15

    Archived samples of blue grouse (Dendragapus obscurus) gizzard contents, inclusive of grit, collected yearly between 1959 and 1970 were analyzed for cadmium, lead, zinc, and copper content. Approximately halfway through the 12-year sampling period, an open-pit copper mine began activities, then ceased operations 2 years later. Thus the archived samples provided a unique opportunity to determine if avian gizzard contents, inclusive of grit, could reveal patterns in the anthropogenic deposition of trace metals associated with mining activities. Gizzard concentrations of cadmium and copper strongly coincided with the onset of opening and the closing of the pit mining activity. Gizzard zinc and lead demonstrated significant among year variation; however, maximum concentrations did not correlate to mining activity. The archived gizzard contents did provide a useful tool for documenting trends in metal depositional patterns related to an anthropogenic activity. Further, blue grouse ingesting grit particles during the time of active mining activity would have been exposed to toxicologically significant levels of cadmium. Gizzard lead concentrations were also of toxicological significance but not related to mining activity. This type of "pulse" toxic metal exposure as a consequence of open-pit mining activity would not necessarily have been revealed through a "snap-shot" of soil, plant or avian tissue trace metal analysis post-mining activity. Copyright © 2010 Elsevier B.V. All rights reserved.

  19. The Representation of Knowledge in Image Understanding.

    DTIC Science & Technology

    1985-03-01

    for memory traces? It’s been quite a few years since Lashley wrote his famous paper "Search for the Engram ." That paper pinpointed the fundamental...34 engram hunters," mostly empirical neurobiologists guided by their own often powerful working hypotheses, ensued and has continued that search with...progress. What is an Engram ? (Some Informal Considerations) Memory, viewed as traces of experience, is necessarily massively . distributed. As an example

  20. Memory traces for spoken words in the brain as revealed by the hemodynamic correlate of the mismatch negativity.

    PubMed

    Shtyrov, Yury; Osswald, Katja; Pulvermüller, Friedemann

    2008-01-01

    The mismatch negativity response, considered a brain correlate of automatic preattentive auditory processing, is enhanced for word stimuli as compared with acoustically matched pseudowords. This lexical enhancement, taken as a signature of activation of language-specific long-term memory traces, was investigated here using functional magnetic resonance imaging to complement the previous electrophysiological studies. In passive oddball paradigm, word stimuli were randomly presented as rare deviants among frequent pseudowords; the reverse conditions employed infrequent pseudowords among word stimuli. Random-effect analysis indicated clearly distinct patterns for the different lexical types. Whereas the hemodynamic mismatch response was significant for the word deviants, it did not reach significance for the pseudoword conditions. This difference, more pronounced in the left than right hemisphere, was also assessed by analyzing average parameter estimates in regions of interests within both temporal lobes. A significant hemisphere-by-lexicality interaction confirmed stronger blood oxygenation level-dependent mismatch responses to words than pseudowords in the left but not in the right superior temporal cortex. The increased left superior temporal activation and the laterality of cortical sources elicited by spoken words compared with pseudowords may indicate the activation of cortical circuits for lexical material even in passive oddball conditions and suggest involvement of the left superior temporal areas in housing such word-processing neuronal circuits.

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