Sparkling extreme-ultraviolet bright dots observed with Hi-C

DOE Office of Scientific and Technical Information (OSTI.GOV)

Régnier, S.; Alexander, C. E.; Walsh, R. W.

Observing the Sun at high time and spatial scales is a step toward understanding the finest and fundamental scales of heating events in the solar corona. The high-resolution coronal (Hi-C) instrument has provided the highest spatial and temporal resolution images of the solar corona in the EUV wavelength range to date. Hi-C observed an active region on 2012 July 11 that exhibits several interesting features in the EUV line at 193 Å. One of them is the existence of short, small brightenings 'sparkling' at the edge of the active region; we call these EUV bright dots (EBDs). Individual EBDs havemore » a characteristic duration of 25 s with a characteristic length of 680 km. These brightenings are not fully resolved by the SDO/AIA instrument at the same wavelength; however, they can be identified with respect to the Hi-C location of the EBDs. In addition, EBDs are seen in other chromospheric/coronal channels of SDO/AIA, which suggests a temperature between 0.5 and 1.5 MK. Based on their frequency in the Hi-C time series, we define four different categories of EBDs: single peak, double peak, long duration, and bursty. Based on a potential field extrapolation from an SDO/HMI magnetogram, the EBDs appear at the footpoints of large-scale, trans-equatorial coronal loops. The Hi-C observations provide the first evidence of small-scale EUV heating events at the base of these coronal loops, which have a free magnetic energy of the order of 10{sup 26} erg.« less

A synthetic polymer system with repeatable chemical recyclability

NASA Astrophysics Data System (ADS)

Zhu, Jian-Bo; Watson, Eli M.; Tang, Jing; Chen, Eugene Y.-X.

2018-04-01

The development of chemically recyclable polymers offers a solution to the end-of-use issue of polymeric materials and provides a closed-loop approach toward a circular materials economy. However, polymers that can be easily and selectively depolymerized back to monomers typically require low-temperature polymerization methods and also lack physical properties and mechanical strengths required for practical uses. We introduce a polymer system based on γ-butyrolactone (GBL) with a trans-ring fusion at the α and β positions. Such trans-ring fusion renders the commonly considered as nonpolymerizable GBL ring readily polymerizable at room temperature under solvent-free conditions to yield a high–molecular weight polymer. The polymer has enhanced thermostability and can be repeatedly and quantitatively recycled back to its monomer by thermolysis or chemolysis. Mixing of the two enantiomers of the polymer generates a highly crystalline supramolecular stereocomplex.

Mechanism of autophosphorylation of mycobacterial PknB explored by molecular dynamics simulations.

PubMed

Damle, Nikhil P; Mohanty, Debasisa

2014-07-22

Mycobacterial Ser/Thr kinase, PknB, is essential for the growth of the pathogen. Unphosphorylated PknB is catalytically inactive, and its activation requires autophosphorylation of Thr residues on the activation loop. Autophosphorylation can in principle take place via two distinct mechanisms. Intermolecular trans autophosphorylation involves dimerization and phosphorylation of the activation loop of one chain in the catalytic pocket of the other chain. On the other hand, intramolecular cis autophosphorylation involves phosphorylation of the activation loop of the kinases in its own catalytic pocket within a monomer. On the basis of the crystal structure of PknB in the front-to-front dimeric form, it is currently believed that activation of PknB involves trans autophosphorylation. However, because of the lack of coordinates of the activation loop in the crystal structures, atomic details of the conformational changes associated with activation are yet to be deciphered. Therefore, to understand the conformational transitions associated with activation via autophosphorylation, a series of explicit solvent molecular dynamics simulations with a duration of 1 μs have been performed on each of the phosphorylated and nonphosphorylated forms of the PknB catalytic domain in monomeric and dimeric states. Simulations on phosphorylated PknB revealed a differential network of crucial electrostatic and hydrophobic residues that stabilize the phosphorylated form in the active conformation. Interestingly, in our simulations on nonphosphorylated monomers, the activation loop was observed to fold into its own active site, thereby opening the novel possibility of activation through intramolecular cis autophosphorylation. Thus, our simulations suggest that autophosphorylation of PknB might also involve cis initiation followed by trans amplification as reported for other eukaryotic kinases based on recent reaction kinetics studies.

Unilateral Trans-cerebellomedullary Fissure Approach for Occipital Artery to Posterior Inferior Cerebellar Artery Bypass during Aneurysmal Surgery.

PubMed

Abe, Hiroshi; Miki, Koichi; Kobayashi, Hiromasa; Ogata, Toshiyasu; Iwaasa, Mitsutoshi; Matsushima, Toshio; Inoue, Tooru

2017-06-15

Occipital artery (OA) to the posterior inferior cerebellar artery (PICA) bypass is indispensable for the management of complex aneurysms of the PICA that cannot be reconstructed with surgical clipping or coil embolization. Although OA-PICA bypass is a comparatively standard procedure, the bypass is difficult to perform in some cases because of the location and situation of the PICA. We describe the usefulness of the unilateral trans-cerebellomedullary fissure (CMF) approach for OA-PICA bypass. Thirty patients with aneurysms in the vertebral artery (VA) or PICA were treated using OA-PICA bypasses between 2010 and 2015. Among them, the unilateral trans-CMF approach was used for OA-PICA anastomosis in 13 patients. The surgical procedures performed on and the medical records of all the patients were retrospectively reviewed. The unilateral trans-CMF approach was performed for two reasons depending on the PICA location or situation: either because the caudal loop could not be used as a recipient artery because of arterial dissection (3 patients) or because the tonsillo-medullary segment that was located in the upper part of the CMF did not have a caudal loop that was large enough (10 patients). The trans-CMF approach provided a good operative field for the OA-PICA bypass and the anastomosis were successfully performed in all patients. When the recipient artery was located in the upper part of the CMF, the unilateral trans-cerebello-medullary fissure approach provided a sufficient operative field for OA-PICA anastomosis.

Unilateral Trans-cerebellomedullary Fissure Approach for Occipital Artery to Posterior Inferior Cerebellar Artery Bypass during Aneurysmal Surgery

PubMed Central

ABE, Hiroshi; MIKI, Koichi; KOBAYASHI, Hiromasa; OGATA, Toshiyasu; IWAASA, Mitsutoshi; MATSUSHIMA, Toshio; INOUE, Tooru

2017-01-01

Occipital artery (OA) to the posterior inferior cerebellar artery (PICA) bypass is indispensable for the management of complex aneurysms of the PICA that cannot be reconstructed with surgical clipping or coil embolization. Although OA-PICA bypass is a comparatively standard procedure, the bypass is difficult to perform in some cases because of the location and situation of the PICA. We describe the usefulness of the unilateral trans-cerebellomedullary fissure (CMF) approach for OA-PICA bypass. Thirty patients with aneurysms in the vertebral artery (VA) or PICA were treated using OA-PICA bypasses between 2010 and 2015. Among them, the unilateral trans-CMF approach was used for OA-PICA anastomosis in 13 patients. The surgical procedures performed on and the medical records of all the patients were retrospectively reviewed. The unilateral trans-CMF approach was performed for two reasons depending on the PICA location or situation: either because the caudal loop could not be used as a recipient artery because of arterial dissection (3 patients) or because the tonsillo-medullary segment that was located in the upper part of the CMF did not have a caudal loop that was large enough (10 patients). The trans-CMF approach provided a good operative field for the OA-PICA bypass and the anastomosis were successfully performed in all patients. When the recipient artery was located in the upper part of the CMF, the unilateral trans-cerebello-medullary fissure approach provided a sufficient operative field for OA-PICA anastomosis. PMID:28484132

Winding a Long Coil with a Pre-Programmed Turns Density Variation

DTIC Science & Technology

1975-05-27

turns den- sity is to follow. A machine having this capability is needed to provide a towed ELF loop antenna with the smoothly tapered sensitivity...Introduction A submarine towed ELF loop antenna vibrates longitudinally and trans- versely during towing. The vibration is driven by the fluctuating surface...in attaining the smoothly varying turns density required for the signal winding of a towed ELF loop antenna . Acknowledgments Thanks are due to John

Quasi-periodic Counter-propagating Fast Magnetosonic Wave Trains from Neighboring Flares: SDO/AIA Observations and 3D MHD Modeling

NASA Astrophysics Data System (ADS)

Ofman, Leon; Liu, Wei

2018-06-01

Since their discovery by the Solar Dynamics Observatory/Atmospheric Imaging Assembly (AIA) in the extreme ultraviolet, rapid (phase speeds of ∼1000 km s‑1), quasi-periodic, fast-mode propagating (QFP) wave trains have been observed accompanying many solar flares. They typically propagate in funnel-like structures associated with the expanding magnetic field topology of the active regions (ARs). The waves provide information on the associated flare pulsations and the magnetic structure through coronal seismology (CS). The reported waves usually originate from a single localized source associated with the flare. Here we report the first detection of counter-propagating QFPs associated with two neighboring flares on 2013 May 22, apparently connected by large-scale, trans-equatorial coronal loops. We present the first results of a 3D MHD model of counter-propagating QFPs in an idealized bipolar AR. We investigate the excitation, propagation, nonlinearity, and interaction of the counter-propagating waves for a range of key model parameters, such as the properties of the sources and the background magnetic structure. In addition to QFPs, we also find evidence of trapped fast- (kink) and slow-mode waves associated with the event. We apply CS to determine the magnetic field strength in an oscillating loop during the event. Our model results are in qualitative agreement with the AIA-observed counter-propagating waves and used to identify the various MHD wave modes associated with the observed event, providing insights into their linear and nonlinear interactions. Our observations provide the first direct evidence of counter-propagating fast magnetosonic waves that can potentially lead to turbulent cascade and carry significant energy flux for coronal heating in low-corona magnetic structures.

N-Substituted cis-4a-(3-Hydroxyphenyl)-8a-methyloctahydroisoquinolines Are Opioid Receptor Pure Antagonists

PubMed Central

Carroll, F. Ivy; Chaudhari, Sachin; Thomas, James B.; Mascarella, S. Wayne; Gigstad, Kenneth M.; Deschamps, Jeffrey; Navarro, Hernán A.

2008-01-01

N-Substituted cis-4a-(3-hydroxyphenyl)-8a-methyloctahydroisoquinolines (6a–g) were designed and synthesized as conformationally constrained analogues of the trans-3,4-dimethyl-4-(3-hydroxyphenyl)piperidine (4) class of opioid receptor pure antagonists. The methyloctahydroisoquinolines 6a–g can exist in conformations where the 3-hydroxyphenyl substituent is either axial or equatorial similar to the (3-hydroxyphenyl)piperidines 4. The 3-hydroxyphenyl equatorial conformation is responsible for the antagonist activity observed in the (3-hydroxyphenyl)piperidine antagonists. Single crystal X-ray analysis of 6a shows that the 3-hydroxyphenyl equatorial conformation is favored in the solid state. Molecular modeling studies also suggest that the equatorial conformation has the lower potential energy relative to the axial conformation. Evaluation of compounds 6a–g in the [35S]GTP-γ-S in vitro functional assay showed that they were opioid receptor pure antagonists. N-[4a-(3-Hydroxyphenyl)-8a-methyl-2-(3-phenylpropyl)octahydroisoquinoline-6-yl]-3-(piperidin-1-yl)propionamide (6d) with a Ke of 0.27 nM at the κ opioid receptor with 154- and 46-fold selectively relative to the μ and δ receptors, respectively, possessed the best combination of κ potency and selectivity. PMID:16366600

Small-Molecule Inhibition and Activation-Loop Trans-Phosphorylation of the IGF1 Receptor

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu,J.; Li, W.; Craddock, B.

2008-01-01

The insulin-like growth factor-1 receptor (IGF1R) is a receptor tyrosine kinase (RTK) that has a critical role in mitogenic signalling during embryogenesis and an antiapoptotic role in the survival and progression of many human tumours. Here, we present the crystal structure of the tyrosine kinase domain of IGF1R (IGF1RK), in its unphosphorylated state, in complex with a novel compound, cis-3-[3-(4-methyl-piperazin-l-yl)-cyclobutyl]-1-(2-phenyl-quinolin-7-yl)-imidazo[1, 5-a]pyrazin-8-ylamine (PQIP), which we show is a potent inhibitor of both the unphosphorylated (basal) and phosphorylated (activated) states of the kinase. PQIP interacts with residues in the ATP-binding pocket and in the activation loop, which confers specificity for IGF1RK andmore » the highly related insulin receptor (IR) kinase. In this crystal structure, the IGF1RK active site is occupied by Tyr1135 from the activation loop of an symmetry (two-fold)-related molecule. This dimeric arrangement affords, for the first time, a visualization of the initial trans-phosphorylation event in the activation loop of an RTK, and provides a molecular rationale for a naturally occurring mutation in the activation loop of the IR that causes type II diabetes mellitus.« less

Distinct loops in arrestin differentially regulate ligand binding within the GPCR opsin

PubMed Central

Sommer, Martha E.; Hofmann, Klaus Peter; Heck, Martin

2012-01-01

G-protein-coupled receptors are universally regulated by arrestin binding. Here we show that rod arrestin induces uptake of the agonist all-trans-retinol in only half the population of phosphorylated opsin in the native membrane. Agonist uptake blocks subsequent entry of the inverse agonist 11-cis-retinal (that is, regeneration of rhodopsin), but regeneration is not blocked in the other half of aporeceptors. Environmentally sensitive fluorophores attached to arrestin reported that conformational changes in loopV−VI (N-domain) are coupled to the entry of agonist, while loopXVIII−XIX (C-domain) engages the aporeceptor even before agonist is added. The data are most consistent with a model in which each domain of arrestin engages its own aporeceptor, and the different binding preferences of the domains lead to asymmetric ligand binding by the aporeceptors. Such a mechanism would protect the rod cell in bright light by concurrently sequestering toxic all-trans-retinol and allowing regeneration with 11-cis-retinal. PMID:22871814

Distinct loops in arrestin differentially regulate ligand binding within the GPCR opsin.

PubMed

Sommer, Martha E; Hofmann, Klaus Peter; Heck, Martin

2012-01-01

G-protein-coupled receptors are universally regulated by arrestin binding. Here we show that rod arrestin induces uptake of the agonist all-trans-retinal [corrected] in only half the population of phosphorylated opsin in the native membrane. Agonist uptake blocks subsequent entry of the inverse agonist 11-cis-retinal (that is, regeneration of rhodopsin), but regeneration is not blocked in the other half of aporeceptors. Environmentally sensitive fluorophores attached to arrestin reported that conformational changes in loop(V-VI) (N-domain) are coupled to the entry of agonist, while loop(XVIII-XIX) (C-domain) engages the aporeceptor even before agonist is added. The data are most consistent with a model in which each domain of arrestin engages its own aporeceptor, and the different binding preferences of the domains lead to asymmetric ligand binding by the aporeceptors. Such a mechanism would protect the rod cell in bright light by concurrently sequestering toxic all-trans-retinal [corrected] and allowing regeneration with 11-cis-retinal.

Adaptive Nonlinear Tracking Control of Kinematically Redundant Robot Manipulators with Sub-Task Extensions

DTIC Science & Technology

2005-01-01

C. Hughes, Spacecraft Attitude Dynamics, New York, NY: Wiley, 1994. [8] H. K. Khalil, “Adaptive Output Feedback Control of Non- linear Systems...Closed-Loop Manipulator Control Using Quaternion Feedback ”, IEEE Trans. Robotics and Automation, Vol. 4, No. 4, pp. 434-440, (1988). [23] E...full-state feedback quaternion based controller de- veloped in [5] and focuses on the design of a general sub-task controller. This sub-task controller

A low-power CMOS trans-impedance amplifier for FM/cw ladar imaging system

NASA Astrophysics Data System (ADS)

Hu, Kai; Zhao, Yi-qiang; Sheng, Yun; Zhao, Hong-liang; Yu, Hai-xia

2013-09-01

A scannerless ladar imaging system based on a unique frequency modulation/continuous wave (FM/cw) technique is able to entirely capture the target environment, using a focal plane array to construct a 3D picture of the target. This paper presents a low power trans-impedance amplifier (TIA) designed and implemented by 0.18 μm CMOS technology, which is used in the FM/cw imaging ladar with a 64×64 metal-semiconductor-metal(MSM) self-mixing detector array. The input stage of the operational amplifier (op amp) in TIA is realized with folded cascade structure to achieve large open loop gain and low offset. The simulation and test results of TIA with MSM detectors indicate that the single-end trans-impedance gain is beyond 100 kΩ, and the -3 dB bandwidth of Op Amp is beyond 60 MHz. The input common mode voltage ranges from 0.2 V to 1.5 V, and the power dissipation is reduced to 1.8 mW with a supply voltage of 3.3 V. The performance test results show that the TIA is a candidate for preamplifier of the read-out integrated circuit (ROIC) in the FM/cw scannerless ladar imaging system.

Tryptophan as a Molecular Shovel in the Glycosyl Transfer Activity of Trypanosoma cruzi Trans-sialidase

PubMed Central

Mitchell, Felicity L.; Miles, Steven M.; Neres, João; Bichenkova, Elena V.; Bryce, Richard A.

2010-01-01

Abstract Molecular dynamics investigations into active site plasticity of Trypanosoma cruzi trans-sialidase, a protein implicated in Chagas disease, suggest that movement of the Trp312 loop plays an important role in the enzyme's sialic acid transfer mechanism. The observed Trp312 flexibility equates to a molecular shovel action, which leads to the expulsion of the donor aglycone leaving group from the catalytic site. These computational simulations provide detailed structural insights into sialyl transfer by the trans-sialidase and may aid the design of inhibitors effective against this neglected tropical disease. PMID:20441732

Broadband Ionospheric Scintillation Measurements from Space

NASA Astrophysics Data System (ADS)

Suszcynsky, D. M.; Light, M. E.; Pigue, M. J.

2014-12-01

The U.S. Department of Energy's Radio Frequency Propagation (RFProp) experiment consists of a satellite-based radio receiver suite to study various aspects of trans-ionospheric signal propagation and detection in four frequency bands, 2 - 55 MHz, 125 - 175 MHz, 365 - 415 MHz and 825 - 1100 MHz. In this paper, we present an overview of the RFProp on-orbit research and analysis effort with particular focus on an equatorial scintillation experiment called ESCINT. The 3-year ESCINT project is designed to characterize equatorial ionospheric scintillation in the upper HF and lower VHF portions of the radio spectrum (20 - 150 MHz). Both a 40 MHz continuous wave (CW) signal and 30 - 42 MHz swept frequency signal are transmitted to the satellite receiver suite from the Reagan Test Site at Kwajalein Atoll in the Marshall Islands (8.7° N, 167.7° E) in four separate campaigns centered on the 2014 and 2015 equinoxes. Results from the first campaign conducted from April 22 - May 15, 2014 will be presented including (a) coherence bandwidth measurements over a full range of transmission frequencies and scintillation activity levels, (b) spread-Doppler clutter effects arising from preferential ray paths to the satellite due to refraction off of isolated density irregularities, and (c) supporting ray-trace simulations. The broadband nature of the measurements is found to offer unique insight into both the structure of ionospheric irregularities and their impact on HF/VHF trans-ionospheric radio wave propagation.

Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA

PubMed Central

Gamache, Eric R.; Doh, Jung H.; Ritz, Justin; Laederach, Alain; Bellaousov, Stanislav; Mathews, David H.; Curcio, M. Joan

2017-01-01

The genomic RNA of the retrotransposon Ty1 is packaged as a dimer into virus-like particles. The 5′ terminus of Ty1 RNA harbors cis-acting sequences required for translation initiation, packaging and initiation of reverse transcription (TIPIRT). To identify RNA motifs involved in dimerization and packaging, a structural model of the TIPIRT domain in vitro was developed from single-nucleotide resolution RNA structural data. In general agreement with previous models, the first 326 nucleotides of Ty1 RNA form a pseudoknot with a 7-bp stem (S1), a 1-nucleotide interhelical loop and an 8-bp stem (S2) that delineate two long, structured loops. Nucleotide substitutions that disrupt either pseudoknot stem greatly reduced helper-Ty1-mediated retrotransposition of a mini-Ty1, but only mutations in S2 destabilized mini-Ty1 RNA in cis and helper-Ty1 RNA in trans. Nested in different loops of the pseudoknot are two hairpins with complementary 7-nucleotide motifs at their apices. Nucleotide substitutions in either motif also reduced retrotransposition and destabilized mini- and helper-Ty1 RNA. Compensatory mutations that restore base-pairing in the S2 stem or between the hairpins rescued retrotransposition and RNA stability in cis and trans. These data inform a model whereby a Ty1 RNA kissing complex with two intermolecular kissing-loop interactions initiates dimerization and packaging. PMID:28445416

Tryptophan as a molecular shovel in the glycosyl transfer activity of Trypanosoma cruzi trans-sialidase.

PubMed

Mitchell, Felicity L; Miles, Steven M; Neres, João; Bichenkova, Elena V; Bryce, Richard A

2010-05-19

Molecular dynamics investigations into active site plasticity of Trypanosoma cruzi trans-sialidase, a protein implicated in Chagas disease, suggest that movement of the Trp(312) loop plays an important role in the enzyme's sialic acid transfer mechanism. The observed Trp(312) flexibility equates to a molecular shovel action, which leads to the expulsion of the donor aglycone leaving group from the catalytic site. These computational simulations provide detailed structural insights into sialyl transfer by the trans-sialidase and may aid the design of inhibitors effective against this neglected tropical disease. Copyright (c) 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Phase-Locked Optical Generation of mmW/THz Signals

DTIC Science & Technology

2009-11-01

22 6.2. TIA (Trans-Impedance Amplifier ...24 6.3. Variable gain Amplifier ...loop architectures. Generate models including detector impulse response, feedback amplifier impulse response and laser current tuning response

Complex Dynamics of Equatorial Scintillation

NASA Astrophysics Data System (ADS)

Piersanti, Mirko; Materassi, Massimo; Forte, Biagio; Cicone, Antonio

2017-04-01

Radio power scintillation, namely highly irregular fluctuations of the power of trans-ionospheric GNSS signals, is the effect of ionospheric plasma turbulence. The scintillation patterns on radio signals crossing the medium inherit the ionospheric turbulence characteristics of inter-scale coupling, local randomness and large time variability. On this basis, the remote sensing of local features of the turbulent plasma is feasible by studying radio scintillation induced by the ionosphere. The distinctive character of intermittent turbulent media depends on the fluctuations on the space- and time-scale statistical properties of the medium. Hence, assessing how the signal fluctuation properties vary under different Helio-Geophysical conditions will help to understand the corresponding dynamics of the turbulent medium crossed by the signal. Data analysis tools, provided by complex system science, appear to be best fitting to study the response of a turbulent medium, as the Earth's equatorial ionosphere, to the non-linear forcing exerted by the Solar Wind (SW). In particular we used the Adaptive Local Iterative Filtering, the Wavelet analysis and the Information theory data analysis tool. We have analysed the radio scintillation and ionospheric fluctuation data at low latitude focusing on the time and space multi-scale variability and on the causal relationship between forcing factors from the SW environment and the ionospheric response.

Converging migration routes of Eurasian hobbies Falco subbuteo crossing the African equatorial rain forest.

PubMed

Strandberg, Roine; Klaassen, Raymond H G; Hake, Mikael; Olofsson, Patrik; Alerstam, Thomas

2009-02-22

Autumn migration of adult Eurasian hobbies Falco subbuteo from Europe to southern Africa was recorded by satellite telemetry and observed routes were compared with randomly simulated routes. Two non-random features of observed routes were revealed: (i) shifts to more westerly longitudes than straight paths to destinations and (ii) strong route convergence towards a restricted area close to the equator (1 degree S, 15 degrees E). The birds migrated south or southwest to approximately 10 degrees N, where they changed to south-easterly courses. The maximal spread between routes at 10 degrees N (2134 km) rapidly decreased to a minimum (67 km) close to the equator. We found a striking relationship between the route convergence and the distribution of continuous rainforest, suggesting that hobbies minimize flight distance across the forest, concentrating in a corridor where habitat may be more suitable for travelling and foraging. With rainforest forming a possible ecological barrier, many migrants may cross the equator either at 15 degrees E, similar to the hobbies, or at 30-40 degrees E, east of the rainforest where large-scale migration is well documented. Much remains to be understood about the role of the rainforest for the evolution and future of the trans-equatorial Palaearctic-African bird migration systems.

Transmutation of a trans-series: the Gross-Witten-Wadia phase transition

NASA Astrophysics Data System (ADS)

Ahmed, Anees; Dunne, Gerald V.

2017-11-01

We study the change in the resurgent asymptotic properties of a trans-series in two parameters, a coupling g 2 and a gauge index N, as a system passes through a large N phase transition, using the universal example of the Gross-Witten-Wadia third-order phase transition in the unitary matrix model. This transition is well-studied in the immediate vicinity of the transition point, where it is characterized by a double-scaling limit Painlevé II equation, and also away from the transition point using the pre-string difference equation. Here we present a complementary analysis of the transition at all coupling and all finite N, in terms of a differential equation, using the explicit Tracy-Widom mapping of the Gross-Witten-Wadia partition function to a solution of a Painlevé III equation. This mapping provides a simple method to generate trans-series expansions in all parameter regimes, and to study their transmutation as the parameters are varied. For example, at any finite N the weak coupling expansion is divergent, with a non-perturbative trans-series completion; on the other hand, the strong coupling expansion is convergent, and yet there is still a non-perturbative trans-series completion. We show how the different instanton terms `condense' at the transition point to match with the double-scaling limit trans-series. We also define a uniform large N strong-coupling expansion (a non-linear analogue of uniform WKB), which is much more precise than the conventional large N expansion through the transition region, and apply it to the evaluation of Wilson loops.

A digitally controlled AGC loop circuitry for GNSS receiver chip with a binary weighted accurate dB-linear PGA

NASA Astrophysics Data System (ADS)

Gang, Jin; Yiqi, Zhuang; Yue, Yin; Miao, Cui

2015-03-01

A novel digitally controlled automatic gain control (AGC) loop circuitry for the global navigation satellite system (GNSS) receiver chip is presented. The entire AGC loop contains a programmable gain amplifier (PGA), an AGC circuit and an analog-to-digital converter (ADC), which is implemented in a 0.18 μm complementary metal-oxide-semiconductor (CMOS) process and measured. A binary-weighted approach is proposed in the PGA to achieve wide dB-linear gain control with small gain error. With binary-weighted cascaded amplifiers for coarse gain control, and parallel binary-weighted trans-conductance amplifier array for fine gain control, the PGA can provide a 64 dB dynamic range from -4 to 60 dB in 1.14 dB gain steps with a less than 0.15 dB gain error. Based on the Gaussian noise statistic characteristic of the GNSS signal, a digital AGC circuit is also proposed with low area and fast settling. The feed-backward AGC loop occupies an area of 0.27 mm2 and settles within less than 165 μs while consuming an average current of 1.92 mA at 1.8 V.

Trans-activation of the Tetrahymena group I intron ribozyme via a non-native RNA-RNA interaction.

PubMed Central

Ikawa, Y; Shiraishi, H; Inoue, T

1999-01-01

The peripheral P2.1 domain of the Tetrahymena group I intron ribozyme has been shown to be non-essential for splicing. We found, however, that separately prepared P2.1 RNA efficiently accelerates the 3' splice-site-specific hydrolysis reaction of a mutant ribozyme lacking both P2.1 and its upstream region in trans. We report here the unusual properties of this trans-activation. Compensatory mutational analysis revealed that non-native long-range base-pairings between the loop region of P2.1 RNA and L5c region of the mutant ribozyme are needed for the activation in spite of the fact that P2.1 forms base-pairings with P9.1 in the Tetrahymena ribozyme. The trans -activation depends on the non-native RNA-RNA interaction together with the higher order structure of P2.1 RNA. This activation is unique among the known trans-activations that utilize native tertiary interactions or RNA chaperons. PMID:10075996

The Nematode Eukaryotic Translation Initiation Factor 4E/G Complex Works with a trans-Spliced Leader Stem-Loop To Enable Efficient Translation of Trimethylguanosine-Capped RNAs ▿ †

PubMed Central

Wallace, Adam; Filbin, Megan E.; Veo, Bethany; McFarland, Craig; Stepinski, Janusz; Jankowska-Anyszka, Marzena; Darzynkiewicz, Edward; Davis, Richard E.

2010-01-01

Eukaryotic mRNA translation begins with recruitment of the 40S ribosome complex to the mRNA 5′ end through the eIF4F initiation complex binding to the 5′ m7G-mRNA cap. Spliced leader (SL) RNA trans splicing adds a trimethylguanosine (TMG) cap and a sequence, the SL, to the 5′ end of mRNAs. Efficient translation of TMG-capped mRNAs in nematodes requires the SL sequence. Here we define a core set of nucleotides and a stem-loop within the 22-nucleotide nematode SL that stimulate translation of mRNAs with a TMG cap. The structure and core nucleotides are conserved in other nematode SLs and correspond to regions of SL1 required for early Caenorhabditis elegans development. These SL elements do not facilitate translation of m7G-capped RNAs in nematodes or TMG-capped mRNAs in mammalian or plant translation systems. Similar stem-loop structures in phylogenetically diverse SLs are predicted. We show that the nematode eukaryotic translation initiation factor 4E/G (eIF4E/G) complex enables efficient translation of the TMG-SL RNAs in diverse in vitro translation systems. TMG-capped mRNA translation is determined by eIF4E/G interaction with the cap and the SL RNA, although the SL does not increase the affinity of eIF4E/G for capped RNA. These results suggest that the mRNA 5′ untranslated region (UTR) can play a positive and novel role in translation initiation through interaction with the eIF4E/G complex in nematodes and raise the issue of whether eIF4E/G-RNA interactions play a role in the translation of other eukaryotic mRNAs. PMID:20154140

The nematode eukaryotic translation initiation factor 4E/G complex works with a trans-spliced leader stem-loop to enable efficient translation of trimethylguanosine-capped RNAs.

PubMed

Wallace, Adam; Filbin, Megan E; Veo, Bethany; McFarland, Craig; Stepinski, Janusz; Jankowska-Anyszka, Marzena; Darzynkiewicz, Edward; Davis, Richard E

2010-04-01

Eukaryotic mRNA translation begins with recruitment of the 40S ribosome complex to the mRNA 5' end through the eIF4F initiation complex binding to the 5' m(7)G-mRNA cap. Spliced leader (SL) RNA trans splicing adds a trimethylguanosine (TMG) cap and a sequence, the SL, to the 5' end of mRNAs. Efficient translation of TMG-capped mRNAs in nematodes requires the SL sequence. Here we define a core set of nucleotides and a stem-loop within the 22-nucleotide nematode SL that stimulate translation of mRNAs with a TMG cap. The structure and core nucleotides are conserved in other nematode SLs and correspond to regions of SL1 required for early Caenorhabditis elegans development. These SL elements do not facilitate translation of m(7)G-capped RNAs in nematodes or TMG-capped mRNAs in mammalian or plant translation systems. Similar stem-loop structures in phylogenetically diverse SLs are predicted. We show that the nematode eukaryotic translation initiation factor 4E/G (eIF4E/G) complex enables efficient translation of the TMG-SL RNAs in diverse in vitro translation systems. TMG-capped mRNA translation is determined by eIF4E/G interaction with the cap and the SL RNA, although the SL does not increase the affinity of eIF4E/G for capped RNA. These results suggest that the mRNA 5' untranslated region (UTR) can play a positive and novel role in translation initiation through interaction with the eIF4E/G complex in nematodes and raise the issue of whether eIF4E/G-RNA interactions play a role in the translation of other eukaryotic mRNAs.

Trans-umbilical endoscopic cholecystectomy with a water-jet hybrid-knife: A pilot animal study

PubMed Central

Jiang, Sheng-Jun; Shi, Hong; Swar, Gyanendra; Wang, Hai-Xia; Liu, Xiao-Jing; Wang, Yong-Guang

2013-01-01

AIM: To investigate the feasibility and safety of Natural orifice trans-umbilical endoscopic cholecystectomy with a water-jet hybrid-knife in a non-survival porcine model. METHODS: Pure natural orifice transluminal endoscopic surgery (NOTES) cholecystectomy was performed on three non-survival pigs, by transumbilical approach, using a water-jet hybrid-knife. Under general anesthesia, the following steps detailed the procedure: (1) incision of the umbilicus followed by the passage of a double-channel flexible endsocope through an overtube into the peritoneal cavity; (2) establishment of pneumoperitoneum; (3) abdominal exploration; (4) endoscopic cholecystectomy: dissection of the gallbladder performed using water jet equipment, ligation of the cystic artery and duct conducted using nylon loops; and (5) necropsy with macroscopic evaluation. RESULTS: Transumbilical endoscopic cholecystectomy was successfully completed in the first and third pig, with minor bleedings. The dissection times were 137 and 42 min, respectively. The total operation times were 167 and 69 min, respectively. And the lengths of resected specimen were 6.5 and 6.1 cm, respectively. Instillation of the fluid into the gallbladder bed produced edematous, distended tissue making separation safe and easy. Reliable ligation using double nylon loops insured the safety of cutting between the loops. There were no intraoperative complications or hemodynamic instability. Uncontrolled introperative bleeding occurred in the second case, leading to the operation failure. CONCLUSION: Pure NOTES trans-umbilical cholecystectomy with a water-jet hybrid-knife appears to be feasible and safe. Further investigation of this technique with long-term follow-up in animals is needed to confirm the preliminary observation. PMID:24187461

Trans-umbilical endoscopic cholecystectomy with a water-jet hybrid-knife: a pilot animal study.

PubMed

Jiang, Sheng-Jun; Shi, Hong; Swar, Gyanendra; Wang, Hai-Xia; Liu, Xiao-Jing; Wang, Yong-Guang

2013-10-28

To investigate the feasibility and safety of Natural orifice trans-umbilical endoscopic cholecystectomy with a water-jet hybrid-knife in a non-survival porcine model. Pure natural orifice transluminal endoscopic surgery (NOTES) cholecystectomy was performed on three non-survival pigs, by transumbilical approach, using a water-jet hybrid-knife. Under general anesthesia, the following steps detailed the procedure: (1) incision of the umbilicus followed by the passage of a double-channel flexible endoscope through an overtube into the peritoneal cavity; (2) establishment of pneumoperitoneum; (3) abdominal exploration; (4) endoscopic cholecystectomy: dissection of the gallbladder performed using water jet equipment, ligation of the cystic artery and duct conducted using nylon loops; and (5) necropsy with macroscopic evaluation. Transumbilical endoscopic cholecystectomy was successfully completed in the first and third pig, with minor bleedings. The dissection times were 137 and 42 min, respectively. The total operation times were 167 and 69 min, respectively. And the lengths of resected specimen were 6.5 and 6.1 cm, respectively. Instillation of the fluid into the gallbladder bed produced edematous, distended tissue making separation safe and easy. Reliable ligation using double nylon loops insured the safety of cutting between the loops. There were no intraoperative complications or hemodynamic instability. Uncontrolled introperative bleeding occurred in the second case, leading to the operation failure. Pure NOTES trans-umbilical cholecystectomy with a water-jet hybrid-knife appears to be feasible and safe. Further investigation of this technique with long-term follow-up in animals is needed to confirm the preliminary observation.

Ultrahigh and High Resolution Structures and Mutational Analysis of Monomeric Streptococcus pyogenes SpeB Reveal a Functional Role for the Glycine-rich C-terminal Loop

DOE Office of Scientific and Technical Information (OSTI.GOV)

González-Páez, Gonzalo E.; Wolan, Dennis W.

2012-09-05

Cysteine protease SpeB is secreted from Streptococcus pyogenes and has been studied as a potential virulence factor since its identification almost 70 years ago. Here, we report the crystal structures of apo mature SpeB to 1.06 {angstrom} resolution as well as complexes with the general cysteine protease inhibitor trans-epoxysuccinyl-L-leucylamido(4-guanidino)butane and a novel substrate mimetic peptide inhibitor. These structures uncover conformational changes associated with maturation of SpeB from the inactive zymogen to its active form and identify the residues required for substrate binding. With the use of a newly developed fluorogenic tripeptide substrate to measure SpeB activity, we determined IC{sub 50}more » values for trans-epoxysuccinyl-L-leucylamido(4-guanidino)butane and our new peptide inhibitor and the effects of mutations within the C-terminal active site loop. The structures and mutational analysis suggest that the conformational movements of the glycine-rich C-terminal loop are important for the recognition and recruitment of biological substrates and release of hydrolyzed products.« less

Trans-cis switching mechanisms in proline analogues and their relevance for the gating of the 5-HT3 receptor.

PubMed

Melis, Claudio; Bussi, Giovanni; Lummis, Sarah C R; Molteni, Carla

2009-09-03

Trans-cis isomerization of a proline peptide bond is a potential mechanism to open the channel of the 5-HT(3) receptor. Here, we have used the metadynamics method to theoretically explore such a mechanism. We have determined the free energy surfaces in aqueous solution of a series of dipeptides of proline analogues and evaluated the free energy difference between the cis and trans isomers. These theoretical results were then compared with data from mutagenesis experiments, in which the response of the 5-HT(3) receptor was measured when the proline at the apex of the M2-M3 transmembrane domain loop was mutated. The strong correlation between the experimental and the theoretical data supports the existence of a trans-cis proline switch for opening the 5-HT(3) receptor ion channel.

A novel open-loop tracking strategy for photovoltaic systems.

PubMed

Alexandru, Cătălin

2013-01-01

This paper approaches a dual-axis equatorial tracking system that is used to increase the photovoltaic efficiency by maximizing the degree of use of the solar radiation. The innovative aspect in the solar tracker design consists in considering the tracking mechanism as a perturbation for the DC motors. The goal is to control the DC motors, which are perturbed with the motor torques whose computation is based on the dynamic model of the mechanical structure on which external forces act. The daily and elevation angles of the PV module represent the input parameters in the mechanical device, while the outputs transmitted to the controller are the motor torques. The controller tuning is approached by a parametric optimization process, using design of experiments and response surface methodology techniques, in a multiple regression. The simulation and experimental results demonstrate the operational performance of the tracking system.

A Novel Open-Loop Tracking Strategy for Photovoltaic Systems

PubMed Central

Alexandru, Cătălin

2013-01-01

This paper approaches a dual-axis equatorial tracking system that is used to increase the photovoltaic efficiency by maximizing the degree of use of the solar radiation. The innovative aspect in the solar tracker design consists in considering the tracking mechanism as a perturbation for the DC motors. The goal is to control the DC motors, which are perturbed with the motor torques whose computation is based on the dynamic model of the mechanical structure on which external forces act. The daily and elevation angles of the PV module represent the input parameters in the mechanical device, while the outputs transmitted to the controller are the motor torques. The controller tuning is approached by a parametric optimization process, using design of experiments and response surface methodology techniques, in a multiple regression. The simulation and experimental results demonstrate the operational performance of the tracking system. PMID:24327803

1-Methoxy-1-silacyclohexane: Synthesis, molecular structure and conformational behavior by gas electron diffraction, Raman spectroscopy and quantum chemical calculations

NASA Astrophysics Data System (ADS)

Shlykov, Sergey A.; Puchkov, Boris V.; Arnason, Ingvar; Wallevik, Sunna Ó.; Giricheva, Nina I.; Girichev, Georgiy V.; Zhabanov, Yuriy A.

2018-02-01

The synthesis and results of gas electron diffraction (GED), temperature-dependent Raman spectroscopy, along with detailed quantum chemical (QC) study of 1-methoxy-1-silacyclohexane 1 are reported. Within the series of the QC results, DFT(B3LYP, PBE0, M06, M062X), and MP2, the conformational preference predictions are rather contradictive. From the both GED and Raman experimental methods applied, the vapour and liquid phases of 1 were found to exist as a mixture of two conformers, gauche-axial and gauche-equatorial, with almost equal contributions, while the trans-forms are much less stable. In addition, theoretical calculations on the cyclohexane analog, methoxycyclohexane 2, are performed in order to compare with the conformational properties of 1. The latter is predicted not to diminish the axial/equatorial ratio, as contrasted to the expectations at switching the point of the substituent attachment from Si to C.

Converging migration routes of Eurasian hobbies Falco subbuteo crossing the African equatorial rain forest

PubMed Central

Strandberg, Roine; Klaassen, Raymond H.G.; Hake, Mikael; Olofsson, Patrik; Alerstam, Thomas

2008-01-01

Autumn migration of adult Eurasian hobbies Falco subbuteo from Europe to southern Africa was recorded by satellite telemetry and observed routes were compared with randomly simulated routes. Two non-random features of observed routes were revealed: (i) shifts to more westerly longitudes than straight paths to destinations and (ii) strong route convergence towards a restricted area close to the equator (1° S, 15° E). The birds migrated south or southwest to approximately 10° N, where they changed to south-easterly courses. The maximal spread between routes at 10° N (2134 km) rapidly decreased to a minimum (67 km) close to the equator. We found a striking relationship between the route convergence and the distribution of continuous rainforest, suggesting that hobbies minimize flight distance across the forest, concentrating in a corridor where habitat may be more suitable for travelling and foraging. With rainforest forming a possible ecological barrier, many migrants may cross the equator either at 15° E, similar to the hobbies, or at 30–40° E, east of the rainforest where large-scale migration is well documented. Much remains to be understood about the role of the rainforest for the evolution and future of the trans-equatorial Palaearctic-African bird migration systems. PMID:18986977

Response of the Equatorial Ionosphere to the Geomagnetic DP 2 Current System

NASA Technical Reports Server (NTRS)

Yizengaw, E.; Moldwin, M. B.; Zesta, E.; Magoun, M.; Pradipta, R.; Biouele, C. M.; Rabiu, A. B.; Obrou, O. K.; Bamba, Z.; Paula, E. R. De

2016-01-01

The response of equatorial ionosphere to the magnetospheric origin DP 2 current system fluctuations is examined using ground-based multiinstrument observations. The interaction between the solar wind and fluctuations of the interplanetary magnetic field (IMF) Bz, penetrates nearly instantaneously to the dayside equatorial region at all longitudes and modulates the electrodynamics that governs the equatorial density distributions. In this paper, using magnetometers at high and equatorial latitudes, we demonstrate that the quasiperiodic DP 2 current system penetrates to the equator and causes the dayside equatorial electrojet (EEJ) and the independently measured ionospheric drift velocity to fluctuate coherently with the high-latitude DP 2 current as well as with the IMF Bz component. At the same time, radar observations show that the ionospheric density layers move up and down, causing the density to fluctuate up and down coherently with the EEJ and IMF Bz.

Exploring TAR–RNA aptamer loop–loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance

PubMed Central

Lebars, Isabelle; Legrand, Pierre; Aimé, Ahissan; Pinaud, Noël; Fribourg, Sébastien; Di Primo, Carmelo

2008-01-01

In HIV-1, trans-activation of transcription of the viral genome is regulated by an imperfect hairpin, the trans-activating responsive (TAR) RNA element, located at the 5′ untranslated end of all viral transcripts. TAR acts as a binding site for viral and cellular proteins. In an attempt to identify RNA ligands that would interfere with the virus life-cycle by interacting with TAR, an in vitro selection was previously carried out. RNA hairpins that formed kissing-loop dimers with TAR were selected [Ducongé F. and Toulmé JJ (1999) RNA, 5:1605–1614]. We describe here the crystal structure of TAR bound to a high-affinity RNA aptamer. The two hairpins form a kissing complex and interact through six Watson–Crick base pairs. The complex adopts an overall conformation with an inter-helix angle of 28.1°, thus contrasting with previously reported solution and modelling studies. Structural analysis reveals that inter-backbone hydrogen bonds between ribose 2′ hydroxyl and phosphate oxygens at the stem-loop junctions can be formed. Thermal denaturation and surface plasmon resonance experiments with chemically modified 2′-O-methyl incorporated into both hairpins at key positions, clearly demonstrate the involvement of this intermolecular network of hydrogen bonds in complex stability. PMID:18996893

Antenna Controller Replacement Software

NASA Technical Reports Server (NTRS)

Chao, Roger Y.; Morgan, Scott C.; Strain, Martha M.; Rockwell, Stephen T.; Shimizu, Kenneth J.; Tehrani, Barzia J.; Kwok, Jaclyn H.; Tuazon-Wong, Michelle; Valtier, Henry; Nalbandi, Reza;

LOFAR tied-array imaging and spectroscopy of solar S bursts

NASA Astrophysics Data System (ADS)

Morosan, D. E.; Gallagher, P. T.; Zucca, P.; O'Flannagain, A.; Fallows, R.; Reid, H.; Magdalenić, J.; Mann, G.; Bisi, M. M.; Kerdraon, A.; Konovalenko, A. A.; MacKinnon, A. L.; Rucker, H. O.; Thidé, B.; Vocks, C.; Alexov, A.; Anderson, J.; Asgekar, A.; Avruch, I. M.; Bentum, M. J.; Bernardi, G.; Bonafede, A.; Breitling, F.; Broderick, J. W.; Brouw, W. N.; Butcher, H. R.; Ciardi, B.; de Geus, E.; Eislöffel, J.; Falcke, H.; Frieswijk, W.; Garrett, M. A.; Grießmeier, J.; Gunst, A. W.; Hessels, J. W. T.; Hoeft, M.; Karastergiou, A.; Kondratiev, V. I.; Kuper, G.; van Leeuwen, J.; McKay-Bukowski, D.; McKean, J. P.; Munk, H.; Orru, E.; Paas, H.; Pizzo, R.; Polatidis, A. G.; Scaife, A. M. M.; Sluman, J.; Tasse, C.; Toribio, M. C.; Vermeulen, R.; Zarka, P.

2015-08-01

Context. The Sun is an active source of radio emission that is often associated with energetic phenomena ranging from nanoflares to coronal mass ejections (CMEs). At low radio frequencies (<100 MHz), numerous millisecond duration radio bursts have been reported, such as radio spikes or solar S bursts (where S stands for short). To date, these have neither been studied extensively nor imaged because of the instrumental limitations of previous radio telescopes. Aims: Here, LOw Frequency ARray (LOFAR) observations were used to study the spectral and spatial characteristics of a multitude of S bursts, as well as their origin and possible emission mechanisms. Methods: We used 170 simultaneous tied-array beams for spectroscopy and imaging of S bursts. Since S bursts have short timescales and fine frequency structures, high cadence (~50 ms) tied-array images were used instead of standard interferometric imaging, that is currently limited to one image per second. Results: On 9 July 2013, over 3000 S bursts were observed over a time period of ~8 h. S bursts were found to appear as groups of short-lived (<1 s) and narrow-bandwidth (~2.5 MHz) features, the majority drifting at ~3.5 MHz s-1 and a wide range of circular polarisation degrees (2-8 times more polarised than the accompanying Type III bursts). Extrapolation of the photospheric magnetic field using the potential field source surface (PFSS) model suggests that S bursts are associated with a trans-equatorial loop system that connects an active region in the southern hemisphere to a bipolar region of plage in the northern hemisphere. Conclusions: We have identified polarised, short-lived solar radio bursts that have never been imaged before. They are observed at a height and frequency range where plasma emission is the dominant emission mechanism, however, they possess some of the characteristics of electron-cyclotron maser emission. A movie associated to Fig. 3 is available in electronic form at http://www.aanda.org

Combined Spatio-Temporal Impacts of Climate and Longline Fisheries on the Survival of a Trans-Equatorial Marine Migrant

PubMed Central

Ramos, Raül; Granadeiro, José Pedro; Nevoux, Marie; Mougin, Jean-Louis; Dias, Maria Peixe; Catry, Paulo

2012-01-01

Predicting the impact of human activities and their derivable consequences, such as global warming or direct wildlife mortality, is increasingly relevant in our changing world. Due to their particular life history traits, long-lived migrants are amongst the most endangered and sensitive group of animals to these harming effects. Our ability to identify and quantify such anthropogenic threats in both breeding and wintering grounds is, therefore, of key importance in the field of conservation biology. Using long-term capture-recapture data (34 years, 4557 individuals) and year-round tracking data (4 years, 100 individuals) of a trans-equatorial migrant, the Cory’s shearwater (Calonectris diomedea), we investigated the impact of longline fisheries and climatic variables in both breeding and wintering areas on the most important demographic trait of this seabird, i.e. adult survival. Annual adult survival probability was estimated at 0.914±0.022 on average, declining throughout 1978–1999 but recovering during the last decade (2005–2011). Our results suggest that both the incidental bycatch associated with longline fisheries and high sea surface temperatures (indirectly linked to food availability; SST) increased mortality rates during the long breeding season (March-October). Shearwater survival was also negatively affected during the short non-breeding season (December-February) by positive episodes of the Southern Oscillation Index (SOI). Indirect negative effects of climate at both breeding (SST) and wintering grounds (SOI) had a greater impact on survival than longliner activity, and indeed these climatic factors are those which are expected to present more unfavourable trends in the future. Our work underlines the importance of considering both breeding and wintering habitats as well as precise schedules/phenology when assessing the global role of the local impacts on the dynamics of migratory species. PMID:22815833

The SH2 domain of Abl kinases regulates kinase autophosphorylation by controlling activation loop accessibility.

PubMed

Lamontanara, Allan Joaquim; Georgeon, Sandrine; Tria, Giancarlo; Svergun, Dmitri I; Hantschel, Oliver

2014-11-17

The activity of protein kinases is regulated by multiple molecular mechanisms, and their disruption is a common driver of oncogenesis. A central and almost universal control element of protein kinase activity is the activation loop that utilizes both conformation and phosphorylation status to determine substrate access. In this study, we use recombinant Abl tyrosine kinases and conformation-specific kinase inhibitors to quantitatively analyse structural changes that occur after Abl activation. Allosteric SH2-kinase domain interactions were previously shown to be essential for the leukemogenesis caused by the Bcr-Abl oncoprotein. We find that these allosteric interactions switch the Abl activation loop from a closed to a fully open conformation. This enables the trans-autophosphorylation of the activation loop and requires prior phosphorylation of the SH2-kinase linker. Disruption of the SH2-kinase interaction abolishes activation loop phosphorylation. Our analysis provides a molecular mechanism for the SH2 domain-dependent activation of Abl that may also regulate other tyrosine kinases.

The SH2 domain of Abl kinases regulates kinase autophosphorylation by controlling activation loop accessibility

NASA Astrophysics Data System (ADS)

Lamontanara, Allan Joaquim; Georgeon, Sandrine; Tria, Giancarlo; Svergun, Dmitri I.; Hantschel, Oliver

2014-11-01

The activity of protein kinases is regulated by multiple molecular mechanisms, and their disruption is a common driver of oncogenesis. A central and almost universal control element of protein kinase activity is the activation loop that utilizes both conformation and phosphorylation status to determine substrate access. In this study, we use recombinant Abl tyrosine kinases and conformation-specific kinase inhibitors to quantitatively analyse structural changes that occur after Abl activation. Allosteric SH2-kinase domain interactions were previously shown to be essential for the leukemogenesis caused by the Bcr-Abl oncoprotein. We find that these allosteric interactions switch the Abl activation loop from a closed to a fully open conformation. This enables the trans-autophosphorylation of the activation loop and requires prior phosphorylation of the SH2-kinase linker. Disruption of the SH2-kinase interaction abolishes activation loop phosphorylation. Our analysis provides a molecular mechanism for the SH2 domain-dependent activation of Abl that may also regulate other tyrosine kinases.

Investigating the effect of geomagnetic storm and equatorial electrojet on equatorial ionospheric irregularity over East African sector

NASA Astrophysics Data System (ADS)

Seba, Ephrem Beshir; Nigussie, Melessew

2016-11-01

The variability of the equatorial ionosphere is still a big challenge for ionospheric dependent radio wave technology users. To mitigate the effect of equatorial ionospheric irregularity on trans-ionospheric radio waves considerable efforts are being done to understand and model the equatorial electrodynamics and its connection to the creation of ionospheric irregularity. However, the effect of the East-African ionospheric electrodynamics on ionospheric irregularity is not yet well studied due to lack of multiple ground based instruments. But, as a result of International Heliophysical Year (IHY) initiative, which was launched in 2007, some facilities are being deployed in Africa since then. Therefore, recently deployed instruments, in the Ethiopian sector, such as SCINDA-GPS receiver (2.64°N dip angle) for TEC and amplitude scintillation index (S4) data and two magnetometers, which are deployed on and off the magnetic equator, data collected in the March equinoctial months of the years 2011, 2012, and 2015 have been used for this study in conjunction with geomagnetic storm data obtained from high resolution OMNI WEB data center. We have investigated the triggering and inhibition mechanisms for ionospheric irregularities using, scintillation index (S4), equatorial electrojet (EEJ), interplanetary electric field (IEFy), symH index, AE index and interplanetary magnetic field (IMF) Bz on five selected storm and two storm free days. We have found that when the eastward EEJ fluctuates in magnitude due to storm time induced electric fields at around noontime, the post-sunset scintillation is inhibited. All observed post-sunset scintillations in equinox season are resulted when the daytime EEJ is non fluctuating. The strength of noontime EEJ magnitude has shown direct relation with the strength of the post-sunset scintillations. This indicates that non-fluctuating EEJ stronger than 20 nT, can be precursor for the occurrence of the evening time ionospheric irregularities. It is also found that prolonged eastward undershielding electric field during the daytime intensified the daytime EEJ magnitude and resulted in strong post-sunset scintillations. We have also observed that the rate of change of BZ (i.e. electric field produced by Faraday's Induction law) and eastward IEFy around the PRE hour is nicely correlated with strong post-sunset scintillations. Moreover, discussions about the causes for the appearance and disappearance of ionospheric scintillation are presented in this paper.

APOBEC3G Inhibits HIV-1 RNA Elongation by Inactivating the Viral Trans-Activation Response Element

PubMed Central

Nowarski, Roni; Prabhu, Ponnandy; Kenig, Edan; Smith, Yoav; Britan-Rosich, Elena; Kotler, Moshe

2014-01-01

Deamination of cytidine residues in viral DNA (vDNA) is a major mechanism by which APOBEC3G (A3G) inhibits vif-deficient HIV-1 replication. dC to dU transition following RNase-H activity leads to viral cDNA degradation, production of non-functional proteins, formation of undesired stop codons and decreased viral protein synthesis. Here we demonstrate that A3G provides an additional layer of defence against HIV-1 infection dependent on inhibition of proviral transcription. HIV-1 transcription elongation is regulated by the trans-activation response (TAR) element, a short stem-loop RNA structure required for elongation factors binding. Vif-deficient HIV-1-infected cells accumulate short viral transcripts and produce lower amounts of full-length HIV-1 transcripts due to A3G deamination of the TAR apical loop cytidine, highlighting the requirement for TAR loop integrity in HIV-1 transcription. Finally, we show that free ssDNA termini are not essential for A3G activity and a gap of CCC motif blocked with juxtaposed DNA or RNA on either or 3′+5′ ends is sufficient for A3G deamination, identifying A3G as an efficient mutator, and that deamination of (−)SSDNA results in an early block of HIV-1 transcription. PMID:24859335

APOBEC3G inhibits HIV-1 RNA elongation by inactivating the viral trans-activation response element.

PubMed

Nowarski, Roni; Prabhu, Ponnandy; Kenig, Edan; Smith, Yoav; Britan-Rosich, Elena; Kotler, Moshe

2014-07-29

Deamination of cytidine residues in viral DNA is a major mechanism by which APOBEC3G (A3G) inhibits vif-deficient human immunodeficiency virus type 1 (HIV-1) replication. dC-to-dU transition following RNase-H activity leads to viral cDNA degradation, production of non-functional proteins, formation of undesired stop codons and decreased viral protein synthesis. Here, we demonstrate that A3G provides an additional layer of defense against HIV-1 infection dependent on inhibition of proviral transcription. HIV-1 transcription elongation is regulated by the trans-activation response (TAR) element, a short stem-loop RNA structure required for elongation factors binding. Vif-deficient HIV-1-infected cells accumulate short viral transcripts and produce lower amounts of full-length HIV-1 transcripts due to A3G deamination of the TAR apical loop cytidine, highlighting the requirement for TAR loop integrity in HIV-1 transcription. We further show that free single-stranded DNA (ssDNA) termini are not essential for A3G activity and a gap of CCC motif blocked with juxtaposed DNA or RNA on either or 3'+5' ends is sufficient for A3G deamination. These results identify A3G as an efficient mutator and that deamination of (-)SSDNA results in an early block of HIV-1 transcription. Copyright © 2014 Elsevier Ltd. All rights reserved.

Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinase.

PubMed

Jha, Sujata; Rollins, Madeline G; Fuchs, Gabriele; Procter, Dean J; Hall, Elizabeth A; Cozzolino, Kira; Sarnow, Peter; Savas, Jeffrey N; Walsh, Derek

2017-06-29

Ribosomes have the capacity to selectively control translation through changes in their composition that enable recognition of specific RNA elements. However, beyond differential subunit expression during development, evidence for regulated ribosome specification within individual cells has remained elusive. Here we report that a poxvirus kinase phosphorylates serine/threonine residues in the human small ribosomal subunit protein, receptor for activated C kinase (RACK1), that are not phosphorylated in uninfected cells or cells infected by other viruses. These modified residues cluster in an extended loop in RACK1, phosphorylation of which selects for translation of viral or reporter mRNAs with 5' untranslated regions that contain adenosine repeats, so-called polyA-leaders. Structural and phylogenetic analyses revealed that although RACK1 is highly conserved, this loop is variable and contains negatively charged amino acids in plants, in which these leaders act as translational enhancers. Phosphomimetics and inter-species chimaeras have shown that negative charge in the RACK1 loop dictates ribosome selectivity towards viral RNAs. By converting human RACK1 to a charged, plant-like state, poxviruses remodel host ribosomes so that adenosine repeats erroneously generated by slippage of the viral RNA polymerase confer a translational advantage. Our findings provide insight into ribosome customization through trans-kingdom mimicry and the mechanics of species-specific leader activity that underlie poxvirus polyA-leaders.

Trans-kingdom mimicry underlies ribosome customization by a poxvirus kinase

PubMed Central

Jha, Sujata; Rollins, Madeline G.; Fuchs, Gabriele; Procter, Dean J.; Hall, Elizabeth A.; Cozzolino, Kira; Sarnow, Peter; Savas, Jeffrey N.; Walsh, Derek

2017-01-01

Ribosomes have the capacity to selectively control translation through changes in their composition that enable recognition of specific RNA elements1. However, beyond differential subunit expression during development2,3, evidence for regulated ribosome specification within individual cells has remained elusive1. Here, we report that a poxvirus kinase phosphorylates serine/threonine residues in the small ribosomal subunit protein, Receptor for Activated C Kinase (RACK1) that are not phosphorylated in uninfected cells or cells infected by other viruses. These modified residues cluster in an extended loop in RACK1, phosphorylation of which selects for translation of viral or reporter mRNAs whose 5’ untranslated regions (UTRs) contain adenosine repeats, so-called polyA-leaders. Structural and phylogenetic analysis revealed that although RACK1 is highly conserved, this loop is variable and contains negatively charged amino acids in plants, where these leaders act as translational enhancers for poorly understood reasons. Phosphomimetics and inter-species chimeras demonstrated that negative charge in the RACK1 loop dictates ribosome selectivity towards viral RNAs. By converting human RACK1 to a charged, plant-like state, poxviruses remodel host ribosomes so that adenosine repeats erroneously generated by slippage of the viral RNA polymerase4 confer a translational advantage. Our findings uncover ribosome customization through a novel trans-kingdom mimicry and the mechanics of species-specific leader activity that underlie the enigmatic poxvirus polyA-leaders4. PMID:28636603

HRD Motif as the Central Hub of the Signaling Network for Activation Loop Autophosphorylation in Abl Kinase.

PubMed

La Sala, Giuseppina; Riccardi, Laura; Gaspari, Roberto; Cavalli, Andrea; Hantschel, Oliver; De Vivo, Marco

2016-11-08

A number of structural factors modulate the activity of Abelson (Abl) tyrosine kinase, whose deregulation is often related to oncogenic processes. First, only the open conformation of the Abl kinase domain's activation loop (A-loop) favors ATP binding to the catalytic cleft. In this regard, the trans-autophosphorylation of the Y412 residue, which is located along the A-loop, favors the stability of the open conformation, in turn enhancing Abl activity. Another key factor for full Abl activity is the formation of active conformations of the catalytic DFG motif in the Abl kinase domain. Furthermore, binding of the SH2 domain to the N-lobe of the Abl kinase was recently demonstrated to have a long-range allosteric effect on the stabilization of the A-loop open state. Intriguingly, these distinct structural factors imply a complex signal transmission network for controlling the A-loop's flexibility and conformational preference for optimal Abl function. However, the exact dynamical features of this signal transmission network structure remain unclear. Here, we report on microsecond-long molecular dynamics coupled with enhanced sampling simulations of multiple Abl model systems, in the presence or absence of the SH2 domain and with the DFG motif flipped in two ways (in or out conformation). Through comparative analysis, our simulations augment the interpretation of the existing Abl experimental data, revealing a dynamical network of interactions that interconnect SH2 domain binding with A-loop plasticity and Y412 autophosphorylation in Abl. This signaling network engages the DFG motif and, importantly, other conserved structural elements of the kinase domain, namely, the EPK-ELK H-bond network and the HRD motif. Our results show that the signal propagation for modulating the A-loop spatial localization is highly dependent on the HRD motif conformation, which thus acts as the central hub of this (allosteric) signaling network controlling Abl activation and function.

Some properties of trans-equatorial ion whistlers observed by Isis satellites during geomagnetic storms

NASA Technical Reports Server (NTRS)

Watanabe, S.; Ondoh, T.

1986-01-01

Several ion whistlers were observed by the polar orbiting satellites, Isis, during geomagnetic storms associated with large solar flares in 1982. It seems that the proton density ratio to the total ions deduced from the crossover frequency of the transequatorial ion whistlers observed at geomagnetic low latitudes during the main phase of the geomagnetic storm on July 14, 1982 was lower than the usual density ratio. An anomalous pattern seen on the time-compressed dynamic spectra of the ion whistlers on September 6, 1982 may suggest the existence of effects by the component He(3+) in a quite small amount.

Equatorial potassium currents in lenses.

PubMed

Wind, B E; Walsh, S; Patterson, J W

1988-02-01

Earlier work with the vibrating probe demonstrated the existence of outward potassium currents at the equator and inward sodium currents at the optical poles of the lens. By adding microelectrodes to the system, it is possible to relate steady currents (J) to the potential difference (PD) measured with a microelectrode. By injecting an outward current (I), it is possible to determine resistances and also the PD at which the steady outward potassium current becomes zero (PDJ = 0). At this PD the concentration gradient for potassium efflux and the electrical gradient for potassium influx are balanced so that there is no net flow of potassium across the membranes associated with the production of J. The PDJ = 0 for 18 rat lenses was 86 mV and that for 12 frogs lenses was -95 mV. This agrees with the potassium equilibrium potential and provides strong evidence to support the view that the outward equatorial current, J, is a potassium current. With the injection of outward current, I, the PD becomes more negative, the outward equatorial current, J, decreases, and the inward current at the optical poles increases. This suggests that there are separate electrical loops for K+ and Na+ that are partially linked by the Na, K-pump. Using Ohm's law, it is possible to calculate the input resistance (R = delta PD/I), the resistance related to the production of J (RJ = delta PD/delta J), and the effect of the combined resistances (delta J/I). The driving force for J can be estimated (PDJ = 0-PD). The relationships among currents, voltages and resistance can be used to determine the characteristics of the membranes that are associated with the outward potassium current observed at the equator. The effects of graded deformation of the lens were determined. The effects were reversible. The sites of inward and outward currents were not altered. Following deformation, the equatorial current, J, increased, and the PD became less negative. The PDJ = 0 remains the same so the ratio of K+ concentrations across the membrane responsible for J is unchanged. Therefore, the decrease in PD is ascribed to an increase in Na+ permeance with a resultant increase in driving force accounting for the increase in J.

Response of the Surface Circulation of the Arabian Sea to Monsoonal Forcing

NASA Astrophysics Data System (ADS)

Beal, L. M.; Hormann, V.; Lumpkin, R.; Foltz, G. R.

2014-12-01

We use two decades of drifter and satellite data to examine the monthly evolution of the surface circulation of the Arabian Sea, which reverses annually in response to the Indian monsoon winds. Most significantly, we find that in the transition from winter to summer circulations, northward flow appears along the length of the western boundary as early as March or April, one or two months before the onset of the southwest monsoon winds. This reversal is initiated by annual Rossby waves, which in turn are initiated by wind curl forcing during the previous southwest monsoon. These results lead us to speculate that there is an oceanic mechanism through which one monsoon may precondition the next. Previous studies of monsoon circulations with lower temporal resolution have highlighted basin-wide currents and connections that are not found to exist in the monthly fields. In particular, we find that the Northeast Monsoon Current does not reach the western boundary and there is no counter-rotating gyre system during boreal winter. South of the equator, the eastward-flowing South Equatorial Counter Current (SECC) is present year-round, even though equatorial winds are strongly influenced by the monsoons. Semi-annual variability of the SECC is governed by Ekman pumping over the south equatorial gyre (or Seychelles dome) and, surprisingly, it is weakest during the northeast monsoon. This region has important influence on the atmosphere and its link to the monsoons deserves further investigation. The East African Coastal Current feeds into the SECC from the boundary. During the southwest monsoon it overshoots the equator and splits, feeding both northward into the Somali Current and eastward into the SECC after looping back across the equator. This apparent retroflection of the EACC is what was previously known as the southern gyre and is obscured at the surface by strong, locally wind-driven, cross-equatorial Ekman transport. Finally, there is broad, strong eastward flow at the mouth of the Gulf of Aden throughout the southwest monsoon, which is influenced by the curvature and bifurcation of the atmospheric monsoon jet.

A three-dimensional autonomous nonlinear dynamical system modelling equatorial ocean flows

NASA Astrophysics Data System (ADS)

Ionescu-Kruse, Delia

2018-04-01

We investigate a nonlinear three-dimensional model for equatorial flows, finding exact solutions that capture the most relevant geophysical features: depth-dependent currents, poleward or equatorial surface drift and a vertical mixture of upward and downward motions.

The impacts of the St. Patrick's Day superstorm on selected technologies

NASA Astrophysics Data System (ADS)

Carter, B. A.; Yizengaw, E.; Lin, C. S.; Pradipta, R.; Norman, R.; Tseng, T.; Bennett, J.; Bishop, R. L.; Weygand, J. M.; Francis, M.; Terkildsen, M. B.; Groves, K. M.; Caton, R. G.; Tripathi, N.; Zhang, K.

2015-12-01

In the past, significant research efforts have been directed towards understanding how severe geomagnetic storms affect the near-Earth space environment. From this research, we have learned that many technologies are affected by these severe space weather events. The 2015 St. Patrick's Day geomagnetic storm has provided a great opportunity to analyze three selected space weather phenomena that adversely impact modern technologies; (1) Geomagnetically Induced Currents (GICs), (2) increased thermospheric mass density, and (3) the occurrence of Equatorial Plasma Bubbles (EPBs). The serious effects of GICs on power grids in the high-latitude regions is well known. Recent research has indicated that the equatorial region is also susceptible to increased GIC activity due to the equatorial electrojet. Thus, an examination of the equatorial magnetometer data during the St. Patrick's Day storm will be presented. It is also well understood that during geomagnetic storms, the thermospheric mass density at a given altitude increases due to the increase in Joule heating in the high-latitude regions. As a consequence of this, low-Earth orbiting satellites and space debris experience increased atmospheric drag. Changes in atmospheric drag causes orbits to be perturbed, resulting in less accurate orbit predictions. An investigation of the orbits of several low-Earth orbiting satellites will be presented and discussed in the context of collision avoidance, as part of the ongoing space debris problem. Finally, Equatorial Plasma Bubbles (EPBs) are a common phenomenon in the nighttime low-latitude ionosphere. EPBs are known to cause random fluctuations (i.e., scintillations) in the amplitude and phase of trans-ionospheric radio signals. While EPBs have been reported during both geomagnetically quiet and disturbed periods, research clearly indicates that the occurrence of EPBs is dependent on the geomagnetic activity level. The occurrence of EPBs around the world will be presented using data from both ground- and space-based EPB detection platforms. The results will be interpreted in the context of the disturbed ionosphere-thermosphere state and the subsequent impacts on the Generalized Rayleigh-Taylor plasma instability during the St. Patrick's Day storm.

Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific.

PubMed

Ryan, John P; Green, Jonathan R; Espinoza, Eduardo; Hearn, Alex R

2017-01-01

Satellite tracking of 27 whale sharks in the eastern tropical Pacific, examined in relation to environmental data, indicates preferential occupancy of thermo-biological frontal systems. In these systems, thermal gradients are caused by wind-forced circulation and mixing, and biological gradients are caused by associated nutrient enrichment and enhanced primary productivity. Two of the frontal systems result from upwelling, driven by divergence in the current systems along the equator and the west coast of South America; the third results from wind jet dynamics off Central America. All whale sharks were tagged near Darwin Island, Galápagos, within the equatorial Pacific upwelling system. Occupancy of frontal habitat is pronounced in synoptic patterns of shark locations in relation to serpentine, temporally varying thermal fronts across a zonal expanse > 4000 km. 80% of shark positions in northern equatorial upwelling habitat and 100% of positions in eastern boundary upwelling habitat were located within the upwelling front. Analysis of equatorial shark locations relative to thermal gradients reveals occupancy of a transition point in environmental stability. Equatorial subsurface tag data show residence in shallow, warm (>22°C) water 94% of the time. Surface zonal current speeds for all equatorial tracking explain only 16% of the variance in shark zonal movement speeds, indicating that passive drifting is not a primary determinant of movement patterns. Movement from equatorial to eastern boundary frontal zones occurred during boreal winter, when equatorial upwelling weakens seasonally. Off Peru sharks tracked upwelling frontal positions within ~100-350 km from the coast. Off Central America, the largest tagged shark (12.8 m TL) occupied an oceanic front along the periphery of the Panama wind jet. Seasonal movement from waning equatorial upwelling to productive eastern boundary habitat is consistent with underlying trophic dynamics. Persistent shallow residence in thermo-biological frontal zones suggests the role of physical-biological interactions that concentrate food resources.

Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific

PubMed Central

Green, Jonathan R.; Espinoza, Eduardo; Hearn, Alex R.

2017-01-01

Satellite tracking of 27 whale sharks in the eastern tropical Pacific, examined in relation to environmental data, indicates preferential occupancy of thermo-biological frontal systems. In these systems, thermal gradients are caused by wind-forced circulation and mixing, and biological gradients are caused by associated nutrient enrichment and enhanced primary productivity. Two of the frontal systems result from upwelling, driven by divergence in the current systems along the equator and the west coast of South America; the third results from wind jet dynamics off Central America. All whale sharks were tagged near Darwin Island, Galápagos, within the equatorial Pacific upwelling system. Occupancy of frontal habitat is pronounced in synoptic patterns of shark locations in relation to serpentine, temporally varying thermal fronts across a zonal expanse > 4000 km. 80% of shark positions in northern equatorial upwelling habitat and 100% of positions in eastern boundary upwelling habitat were located within the upwelling front. Analysis of equatorial shark locations relative to thermal gradients reveals occupancy of a transition point in environmental stability. Equatorial subsurface tag data show residence in shallow, warm (>22°C) water 94% of the time. Surface zonal current speeds for all equatorial tracking explain only 16% of the variance in shark zonal movement speeds, indicating that passive drifting is not a primary determinant of movement patterns. Movement from equatorial to eastern boundary frontal zones occurred during boreal winter, when equatorial upwelling weakens seasonally. Off Peru sharks tracked upwelling frontal positions within ~100–350 km from the coast. Off Central America, the largest tagged shark (12.8 m TL) occupied an oceanic front along the periphery of the Panama wind jet. Seasonal movement from waning equatorial upwelling to productive eastern boundary habitat is consistent with underlying trophic dynamics. Persistent shallow residence in thermo-biological frontal zones suggests the role of physical-biological interactions that concentrate food resources. PMID:28854201

EXPLAINING INVERTED-TEMPERATURE LOOPS IN THE QUIET SOLAR CORONA WITH MAGNETOHYDRODYNAMIC WAVE-MODE CONVERSION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schiff, Avery J.; Cranmer, Steven R.

Coronal loops trace out bipolar, arch-like magnetic fields above the Sun’s surface. Recent measurements that combine rotational tomography, extreme-ultraviolet imaging, and potential-field extrapolation have shown the existence of large loops with inverted-temperature profiles, i.e., loops for which the apex temperature is a local minimum, not a maximum. These “down loops” appear to exist primarily in equatorial quiet regions near solar minimum. We simulate both these and the more prevalent large-scale “up loops” by modeling coronal heating as a time-steady superposition of (1) dissipation of incompressible Alfvén wave turbulence and (2) dissipation of compressive waves formed by mode conversion from themore » initial population of Alfvén waves. We found that when a large percentage (>99%) of the Alfvén waves undergo this conversion, heating is greatly concentrated at the footpoints and stable “down loops” are created. In some cases we found loops with three maxima that are also gravitationally stable. Models that agree with the tomographic temperature data exhibit higher gas pressures for “down loops” than for “up loops,” which is consistent with observations. These models also show a narrow range of Alfvén wave amplitudes: 3 to 6 km s{sup -1} at the coronal base. This is low in comparison to typical observed amplitudes of 20–30 km s{sup -1} in bright X-ray loops. However, the large-scale loops we model are believed to compose a weaker diffuse background that fills much of the volume of the corona. By constraining the physics of loops that underlie quiescent streamers, we hope to better understand the formation of the slow solar wind.« less

Cadmium-1,4-cyclohexanedicarboxylato coordination polymers bearing different di-alkyl-2,2'-bipyridines: syntheses, crystal structures and photoluminescence studies.

PubMed

Rosales-Vázquez, Luis D; Sánchez-Mendieta, Víctor; Dorazco-González, Alejandro; Martínez-Otero, Diego; García-Orozco, Iván; Morales-Luckie, Raúl A; Jaramillo-Garcia, Jonathan; Téllez-López, Antonio

2017-09-26

Four coordination polymers have been synthesized using self-assembly solution reactions under ambient conditions, reacting Cd(ii) ions with 1,4-cyclohexanedicarboxylic acid in the presence of different 2,2'-bipyridine co-ligands: {[Cd(H 2 O)(e,a-cis-1,4-chdc)(2,2'-bpy)]·H 2 O} n (1); [Cd 2 (H 2 O) 2 (e,a-cis-1,4-chdc) 2 (4,4'-dmb) 2 ] n (2); {[Cd(e,a-cis-1,4-chdc)(5,5'-dmb)]·H 2 O·CH 3 OH} n (3) and {[Cd(e,e-trans-1,4-chdc)(4,4'-dtbb)]·CH 3 OH} n (4), where 1,4-chdc = 1,4-cyclohexanedicarboxylato, 2,2'-bpy = 2,2'-bipyridine, 4,4'-dmb = 4,4'-dimethyl-2,2'-bipyridine, 5,5'-dmb = 5,5'-dimethyl-2,2'-bipyridine and 4,4'-dtbb = 4,4'-di-tert-butyl-2,2'-bipyridine. Crystallographic studies show that compound 1 has a 1D structure propagating along the crystallographic b-axis; the Cd ion in 1 is six-coordinated with a distorted-octahedral coordination sphere. Compound 2 has two crystallographic different Cd ions and both are six-coordinated with a distorted-octahedral coordination sphere. Compound 3 exhibits a seven-coordinated Cd ion having a distinctive distorted-monocapped trigonal prismatic geometry. In compound 4, the Cd ion is also seven-coordinated in a distorted monocapped octahedral geometry. Compounds 2, 3 and 4 possess rhombic-shaped dinuclear units (Cd 2 O 2 ) as nodes to generate larger cycles made up of four dinuclear units, a Cd 4 motif, bridged by four 1,4-chdc ligands, accomplishing, thus, 2D structures. Remarkably, in compound 4 the 1,4-chdc ligand conformation changes to the equatorial, equatorial trans, unlike the other compounds where the bridging ligand conformation is the more typical equatorial, axial cis. The solid state luminescence properties of 1-4 were investigated; polymers 3 and 4 exhibited a strong blue emission (λ em = 410-414 nm) compared to 1 and 2; structure-related photoluminescence is attributed to the degree of hydration of the compounds. Furthermore, Cd-polymer 3 suspended in acetone allows the fluorescence selective sensing of acetonitrile over common organic solvents such as alcohols and DMF, based on turn-on fluorescence intensity with a limit of 53 μmol L -1 .

Enhanced reactivity in dioxirane C-H oxidations via strain release: a computational and experimental study.

PubMed

Zou, Lufeng; Paton, Robert S; Eschenmoser, Albert; Newhouse, Timothy R; Baran, Phil S; Houk, K N

2013-04-19

The site selectivities and stereoselectivities of C-H oxidations of substituted cyclohexanes and trans-decalins by dimethyldioxirane (DMDO) were investigated computationally with quantum mechanical density functional theory (DFT). The multiconfiguration CASPT2 method was employed on model systems to establish the preferred mechanism and transition state geometry. The reaction pathway involving a rebound step is established to account for the retention of stereochemistry. The oxidation of sclareolide with dioxirane reagents is reported, including the oxidation by the in situ generated tBu-TFDO, a new dioxirane that better discriminates between C-H bonds on the basis of steric effects. The release of 1,3-diaxial strain in the transition state contributes to the site selectivity and enhanced equatorial C-H bond reactivity for tertiary C-H bonds, a result of the lowering of distortion energy. In addition to this strain release factor, steric and inductive effects contribute to the rates of C-H oxidation by dioxiranes.

Photoelectric panel with equatorial mounting of drive

NASA Astrophysics Data System (ADS)

Kukhta, M. S.; Krauinsh, P. Y.; Krauinsh, D. P.; Sokolov, A. P.; Mainy, S. B.

2018-03-01

The relevance of the work is determined by the need to create effective models for sunny energy. The article considers a photoelectric panel equipped with a system for tracking the sun. Efficiency of the system is provided by equatorial mounting, which compensates for the rotation of the Earth by rotating the sunny panel in the plane of the celestial equator. The specificity of climatic and geographical conditions of Tomsk is estimated. The dynamics of power variations of photoelectric panels with equatorial mounting during seasonal fluctuations in Tomsk is calculated. A mobile photovoltaic panel with equatorial mounting of the drive has been developed. The methods of design strategy for placing photovoltaic panels in the architectural environment of the city are presented. Key words: sunny energy, photovoltaics, equatorial mounting, mechatronic model, wave reducer, electric drive.

Activation of Membrane Fusion by Murine Leukemia Viruses Is Controlled in cis or in trans by Interactions between the Receptor-Binding Domain and a Conserved Disulfide Loop of the Carboxy Terminus of the Surface Glycoprotein

PubMed Central

Lavillette, Dimitri; Boson, Bertrand; Russell, Stephen J.; Cosset, François-Loïc

2001-01-01

Cell entry of retroviruses is initiated by the recognition of cellular receptors and the subsequent membrane fusion between viral and cellular membranes. These two steps are mediated by the surface (SU) and transmembrane (TM) subunits of the retroviral envelope glycoprotein (Env), respectively. Determinants regulating membrane fusion have been described throughout SU and TM, but the processes coupling receptor recognition to fusion are still elusive. Here we establish that a critical interaction is formed between the receptor-binding domain (RBD) and the major disulfide loop of the carboxy-terminal domain (C domain) of the murine leukemia virus SU. Receptor binding causes an alteration of this interaction and, in turn, promotes further events of Env fusion activation. We characterize mutations which, by lowering this interaction and reducing the compatibility between the RBD and C domains of Env glycoprotein chimeras, affect both Env fusogenicity and sensitivity to receptor interference. Additionally, we demonstrate that suboptimal interactions in such mutant Env proteins can be compensated in trans by soluble RBDs in a manner that depends on their compatibility with the C domain. Our results therefore indicate that RBD/C domain interactions may occur in cis, via the proper RBD of the viral Env itself, or in trans, via a distinct RBD expressed by virion-free Env glycoproteins expressed endogenously by the infected cells or provided by neighboring Env trimers. PMID:11264358

Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations.

PubMed

Islam, Barira; Stadlbauer, Petr; Gil-Ley, Alejandro; Pérez-Hernández, Guillermo; Haider, Shozeb; Neidle, Stephen; Bussi, Giovanni; Banas, Pavel; Otyepka, Michal; Sponer, Jiri

2017-06-13

We have carried out a series of extended unbiased molecular dynamics (MD) simulations (up to 10 μs long, ∼162 μs in total) complemented by replica-exchange with the collective variable tempering (RECT) approach for several human telomeric DNA G-quadruplex (GQ) topologies with TTA propeller loops. We used different AMBER DNA force-field variants and also processed simulations by Markov State Model (MSM) analysis. The slow conformational transitions in the propeller loops took place on a scale of a few μs, emphasizing the need for long simulations in studies of GQ dynamics. The propeller loops sampled similar ensembles for all GQ topologies and for all force-field dihedral-potential variants. The outcomes of standard and RECT simulations were consistent and captured similar spectrum of loop conformations. However, the most common crystallographic loop conformation was very unstable with all force-field versions. Although the loss of canonical γ-trans state of the first propeller loop nucleotide could be related to the indispensable bsc0 α/γ dihedral potential, even supporting this particular dihedral by a bias was insufficient to populate the experimentally dominant loop conformation. In conclusion, while our simulations were capable of providing a reasonable albeit not converged sampling of the TTA propeller loop conformational space, the force-field description still remained far from satisfactory.

Exploring the Dynamics of Propeller Loops in Human Telomeric DNA Quadruplexes Using Atomistic Simulations

PubMed Central

2017-01-01

We have carried out a series of extended unbiased molecular dynamics (MD) simulations (up to 10 μs long, ∼162 μs in total) complemented by replica-exchange with the collective variable tempering (RECT) approach for several human telomeric DNA G-quadruplex (GQ) topologies with TTA propeller loops. We used different AMBER DNA force-field variants and also processed simulations by Markov State Model (MSM) analysis. The slow conformational transitions in the propeller loops took place on a scale of a few μs, emphasizing the need for long simulations in studies of GQ dynamics. The propeller loops sampled similar ensembles for all GQ topologies and for all force-field dihedral-potential variants. The outcomes of standard and RECT simulations were consistent and captured similar spectrum of loop conformations. However, the most common crystallographic loop conformation was very unstable with all force-field versions. Although the loss of canonical γ-trans state of the first propeller loop nucleotide could be related to the indispensable bsc0 α/γ dihedral potential, even supporting this particular dihedral by a bias was insufficient to populate the experimentally dominant loop conformation. In conclusion, while our simulations were capable of providing a reasonable albeit not converged sampling of the TTA propeller loop conformational space, the force-field description still remained far from satisfactory. PMID:28475322

Extending double modulation: combinatorial rules for identifying the modulations necessary for determining elasticities in metabolic pathways.

PubMed

Giersch, C; Cornish-Bowden, A

1996-10-07

The double modulation method for determining the elasticities of pathway enzymes, originally devised by Kacser & Burns (Biochem. Soc. Trans. 7, 1149-1160, 1979), is extended to pathways of complex topological structure, including branching and feedback loops. An explicit system of linear equations for the unknown elasticities is derived. The constraints imposed on this linear system imply that modulations of more than one enzyme are not necessarily independent. Simple combinatorial rules are described for identifying without using any algebra the set of independent modulations that allow the determination of the elasticities of any enzyme. By repeated application, the minimum numbers of modulations required to determine the elasticities of all enzymes of a given pathway can be determined. The procedure is illustrated with numerous examples.

DNA looping by FokI: the impact of synapse geometry on loop topology at varied site orientations

PubMed Central

Rusling, David A.; Laurens, Niels; Pernstich, Christian; Wuite, Gijs J. L.; Halford, Stephen E.

2012-01-01

Most restriction endonucleases, including FokI, interact with two copies of their recognition sequence before cutting DNA. On DNA with two sites they act in cis looping out the intervening DNA. While many restriction enzymes operate symmetrically at palindromic sites, FokI acts asymmetrically at a non-palindromic site. The directionality of its sequence means that two FokI sites can be bridged in either parallel or anti-parallel alignments. Here we show by biochemical and single-molecule biophysical methods that FokI aligns two recognition sites on separate DNA molecules in parallel and that the parallel arrangement holds for sites in the same DNA regardless of whether they are in inverted or repeated orientations. The parallel arrangement dictates the topology of the loop trapped between sites in cis: the loop from inverted sites has a simple 180° bend, while that with repeated sites has a convoluted 360° turn. The ability of FokI to act at asymmetric sites thus enabled us to identify the synapse geometry for sites in trans and in cis, which in turn revealed the relationship between synapse geometry and loop topology. PMID:22362745

The Mitochondrial Genome of the Prasinophyte Prasinoderma coloniale Reveals Two Trans-Spliced Group I Introns in the Large Subunit rRNA Gene

PubMed Central

Pombert, Jean-François; Otis, Christian; Turmel, Monique; Lemieux, Claude

2013-01-01

Organelle genes are often interrupted by group I and or group II introns. Splicing of these mobile genetic occurs at the RNA level via serial transesterification steps catalyzed by the introns'own tertiary structures and, sometimes, with the help of external factors. These catalytic ribozymes can be found in cis or trans configuration, and although trans-arrayed group II introns have been known for decades, trans-spliced group I introns have been reported only recently. In the course of sequencing the complete mitochondrial genome of the prasinophyte picoplanktonic green alga Prasinoderma coloniale CCMP 1220 (Prasinococcales, clade VI), we uncovered two additional cases of trans-spliced group I introns. Here, we describe these introns and compare the 54,546 bp-long mitochondrial genome of Prasinoderma with those of four other prasinophytes (clades II, III and V). This comparison underscores the highly variable mitochondrial genome architecture in these ancient chlorophyte lineages. Both Prasinoderma trans-spliced introns reside within the large subunit rRNA gene (rnl) at positions where cis-spliced relatives, often containing homing endonuclease genes, have been found in other organelles. In contrast, all previously reported trans-spliced group I introns occur in different mitochondrial genes (rns or coxI). Each Prasinoderma intron is fragmented into two pieces, forming at the RNA level a secondary structure that resembles those of its cis-spliced counterparts. As observed for other trans-spliced group I introns, the breakpoint of the first intron maps to the variable loop L8, whereas that of the second is uniquely located downstream of P9.1. The breakpoint In each Prasinoderma intron corresponds to the same region where the open reading frame (ORF) occurs when present in cis-spliced orthologs. This correlation between the intron breakpoint and the ORF location in cis-spliced orthologs also holds for other trans-spliced introns; we discuss the possible implications of this interesting observation for trans-splicing of group I introns. PMID:24386369

Rocket observations of electron-density irregularities in the equatorial ionosphere below 200 km

NASA Technical Reports Server (NTRS)

Klaus, D. E.; Smith, L. G.

1978-01-01

Nike Apache rockets carring instrumentation to measure electron density and its fine structure in the equatorial ionosphere were launched from Chilca, Peru in May and June 1975. The fine structure experiment and the data reduction system are described. Results obtained from this system are presented and compared with those obtained by VHF radar and from other rocket studies. A description of the equatorial ionosphere and its features is also presented.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krishnamurthy, Malathy; Hennelly, Scott Patrick; Dale, Taraka T.

The most straightforward approach to altering the flux through a particular metabolic step is to increase or decrease the concentration of the enzyme catalyst. Until recently engineering strategies for altering gene expression have focused on transcription control using strong inducible promoters or by using one of several strategies to knock down or knock out a wasteful gene. Recently, synthetic riboregulators have been developed for translational regulation of gene expression. We report a new modular synthetic riboregulator class that has the potential to finely tune protein expression and independently control the concentration of each enzyme in an engineered metabolic pathway. Ourmore » design includes a cis-repressor at the 5’ end of the mRNA that forms a stem-loop helix occluding the ribosome binding site and blocking translation. An activating-RNA, expressed in trans, frees the RBS turning on translation. The overall architecture of the riboregulators is designed using Watson-Crick base-pairing stability followed by directed evolution on a portion of each trans-activator to fine tune translation. We report a cis-repressor that can completely shut off translation of antibiotic resistance reporters and a trans-activator that restores translation. We have shown it is possible to use riboregulators to achieve translational control of gene expression over a wide dynamic range. Using a bioluminescent reporter system, we demonstrated an ON/OFF ratio >300. We have demonstrated that a targeting sequence can be changed to develop riboregulators that can independently regulate translation of many genes with minimal cross-talk. In a SELEX experiment, we demonstrated that by subtly altering the sequence of the trans-activator, it is possible to alter the equilibrium between repressed and activated states and achieve intermediate translational control.« less

Tunable riboregulator switches for post-transcriptional control of gene expression

DOE PAGES

Krishnamurthy, Malathy; Hennelly, Scott Patrick; Dale, Taraka T.; ...

2015-07-13

The most straightforward approach to altering the flux through a particular metabolic step is to increase or decrease the concentration of the enzyme catalyst. Until recently engineering strategies for altering gene expression have focused on transcription control using strong inducible promoters or by using one of several strategies to knock down or knock out a wasteful gene. Recently, synthetic riboregulators have been developed for translational regulation of gene expression. We report a new modular synthetic riboregulator class that has the potential to finely tune protein expression and independently control the concentration of each enzyme in an engineered metabolic pathway. Ourmore » design includes a cis-repressor at the 5’ end of the mRNA that forms a stem-loop helix occluding the ribosome binding site and blocking translation. An activating-RNA, expressed in trans, frees the RBS turning on translation. The overall architecture of the riboregulators is designed using Watson-Crick base-pairing stability followed by directed evolution on a portion of each trans-activator to fine tune translation. We report a cis-repressor that can completely shut off translation of antibiotic resistance reporters and a trans-activator that restores translation. We have shown it is possible to use riboregulators to achieve translational control of gene expression over a wide dynamic range. Using a bioluminescent reporter system, we demonstrated an ON/OFF ratio >300. We have demonstrated that a targeting sequence can be changed to develop riboregulators that can independently regulate translation of many genes with minimal cross-talk. In a SELEX experiment, we demonstrated that by subtly altering the sequence of the trans-activator, it is possible to alter the equilibrium between repressed and activated states and achieve intermediate translational control.« less

Spliced leader RNA of trypanosomes: in vivo mutational analysis reveals extensive and distinct requirements for trans splicing and cap4 formation.

PubMed Central

Lücke, S; Xu, G L; Palfi, Z; Cross, M; Bellofatto, V; Bindereif, A

1996-01-01

In trypanosomes mRNAs are generated through trans splicing. The spliced leader (SL) RNA, which donates the 5'-terminal mini-exon to each of the protein coding exons, plays a central role in the trans splicing process. We have established in vivo assays to study in detail trans splicing, cap4 modification, and RNP assembly of the SL RNA in the trypanosomatid species Leptomonas seymouri. First, we found that extensive sequences within the mini-exon are required for SL RNA function in vivo, although a conserved length of 39 nt is not essential. In contrast, the intron sequence appears to be surprisingly tolerant to mutation; only the stem-loop II structure is indispensable. The asymmetry of the sequence requirements in the stem I region suggests that this domain may exist in different functional conformations. Second, distinct mini-exon sequences outside the modification site are important for efficient cap4 formation. Third, all SL RNA mutations tested allowed core RNP assembly, suggesting flexible requirements for core protein binding. In sum, the results of our mutational analysis provide evidence for a discrete domain structure of the SL RNA and help to explain the strong phylogenetic conservation of the mini-exon sequence and of the overall SL RNA secondary structure; they also suggest that there may be certain differences between trans splicing in nematodes and trypanosomes. This approach provides a basis for studying RNA-RNA interactions in the trans spliceosome. Images PMID:8861965

Strategy for stabilization of the antiferroelectric phase (Pbma) over the metastable ferroelectric phase (P2{sub 1}ma) to establish double loop hysteresis in lead-free (1−x)NaNbO{sub 3}-xSrZrO{sub 3} solid solution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Guo, Hanzheng, E-mail: hug17@psu.edu; Randall, Clive A.; Shimizu, Hiroyuki

A new lead-free antiferroelectric solid solution system, (1−x)NaNbO{sub 3}-xSrZrO{sub 3}, was rationalized through noting the crystal chemistry trend, of decreasing the tolerance factor and an increase in the average electronegativity of the system. The SrZrO{sub 3} doping was found to effectively stabilize the antiferroelectric (P) phase in NaNbO{sub 3} without changing its crystal symmetry. Preliminary electron diffraction and polarization measurements were presented which verified the enhanced antiferroelectricity. In view of our recent report of another lead-free antiferroelectric system (1−x)NaNbO{sub 3}-xCaZrO{sub 3} [H. Shimizu et al. “Lead-free antiferroelectric: xCaZrO{sub 3} - (1−x)NaNbO{sub 3} system (0 ≤ x ≤ 0.10),” Dalton Trans.more » (published online)], the present results point to a general strategy of utilizing tolerance factor to develop a broad family of new lead-free antiferroelectrics with double polarization hysteresis loops. We also speculate on a broad family of possible solid solutions that could be identified and tested for this important type of dielectric.« less

Modeling Global Ocean Biogeochemistry With Physical Data Assimilation: A Pragmatic Solution to the Equatorial Instability

NASA Astrophysics Data System (ADS)

Park, Jong-Yeon; Stock, Charles A.; Yang, Xiaosong; Dunne, John P.; Rosati, Anthony; John, Jasmin; Zhang, Shaoqing

2018-03-01

Reliable estimates of historical and current biogeochemistry are essential for understanding past ecosystem variability and predicting future changes. Efforts to translate improved physical ocean state estimates into improved biogeochemical estimates, however, are hindered by high biogeochemical sensitivity to transient momentum imbalances that arise during physical data assimilation. Most notably, the breakdown of geostrophic constraints on data assimilation in equatorial regions can lead to spurious upwelling, resulting in excessive equatorial productivity and biogeochemical fluxes. This hampers efforts to understand and predict the biogeochemical consequences of El Niño and La Niña. We develop a strategy to robustly integrate an ocean biogeochemical model with an ensemble coupled-climate data assimilation system used for seasonal to decadal global climate prediction. Addressing spurious vertical velocities requires two steps. First, we find that tightening constraints on atmospheric data assimilation maintains a better equatorial wind stress and pressure gradient balance. This reduces spurious vertical velocities, but those remaining still produce substantial biogeochemical biases. The remainder is addressed by imposing stricter fidelity to model dynamics over data constraints near the equator. We determine an optimal choice of model-data weights that removed spurious biogeochemical signals while benefitting from off-equatorial constraints that still substantially improve equatorial physical ocean simulations. Compared to the unconstrained control run, the optimally constrained model reduces equatorial biogeochemical biases and markedly improves the equatorial subsurface nitrate concentrations and hypoxic area. The pragmatic approach described herein offers a means of advancing earth system prediction in parallel with continued data assimilation advances aimed at fully considering equatorial data constraints.

Concept development for the ITER equatorial port visible∕infrared wide angle viewing system.

PubMed

Reichle, R; Beaumont, B; Boilson, D; Bouhamou, R; Direz, M-F; Encheva, A; Henderson, M; Huxford, R; Kazarian, F; Lamalle, Ph; Lisgo, S; Mitteau, R; Patel, K M; Pitcher, C S; Pitts, R A; Prakash, A; Raffray, R; Schunke, B; Snipes, J; Diaz, A Suarez; Udintsev, V S; Walker, C; Walsh, M

2012-10-01

The ITER equatorial port visible∕infrared wide angle viewing system concept is developed from the measurement requirements. The proposed solution situates 4 viewing systems in the equatorial ports 3, 9, 12, and 17 with 4 views each (looking at the upper target, the inner divertor, and tangentially left and right). This gives sufficient coverage. The spatial resolution of the divertor system is 2 times higher than the other views. For compensation of vacuum-vessel movements, an optical hinge concept is proposed. Compactness and low neutron streaming is achieved by orienting port plug doglegs horizontally. Calibration methods, risks, and R&D topics are outlined.

Equatorial electrojet and its response to external electromagnetic effects

NASA Astrophysics Data System (ADS)

Bespalov, P. A.; Savina, O. N.

2012-09-01

In the quiet low-latitude Earth's ionosphere, a sufficiently developed current system that is responsible for the Sq magnetic-field variations is formed in quiet Sun days under the action of tidal streams. The density of the corresponding currents is maximum in the midday hours at the equatorial latitudes, where the so-called equatorial electrojet is formed. In this work, we discuss the nature of the equatorial electrojet. This paper studies the value of its response to external effects. First of all, it is concerned with estimating the possibility of using the equatorial electrojet for generating low-frequency electromagnetic signals during periodic heating of the ionosphere by the heating-facility radiation. The equatorial electrojet can also produce electrodynamic response to the natural atmospheric processes, e.g., an acoustic-gravity wave.

Interaction of Extracellular Domain 2 of the Human Retina-specific ATP-binding Cassette Transporter (ABCA4) with All-trans-retinal*

PubMed Central

Biswas-Fiss, Esther E.; Kurpad, Deepa S.; Joshi, Kinjalben; Biswas, Subhasis B.

2010-01-01

The retina-specific ATP-binding cassette (ABC) transporter, ABCA4, is essential for transport of all-trans-retinal from the rod outer segment discs in the retina and is associated with a broad range of inherited retinal diseases, including Stargardt disease, autosomal recessive cone rod dystrophy, and fundus flavimaculatus. A unique feature of the ABCA subfamily of ABC transporters is the presence of highly conserved, long extracellular loops or domains (ECDs) with unknown function. The high degree of sequence conservation and mapped disease-associated mutations in these domains suggests an important physiological significance. Conformational analysis using CD spectroscopy of purified, recombinant ECD2 protein demonstrated that it has an ordered and stable structure composed of 27 ± 3% α-helix, 20 ± 3% β-pleated sheet, and 53 ± 3% coil. Significant conformational changes were observed in disease-associated mutant proteins. Using intrinsic tryptophan fluorescence emission spectrum of ECD2 polypeptide and fluorescence anisotropy, we have demonstrated that this domain specifically interacts with all-trans-retinal. Furthermore, the retinal interaction appeared preferential for the all-trans-isomer and was directly measurable through fluorescence anisotropy analysis. Our results demonstrate that the three macular degeneration-associated mutations lead to significant changes in the secondary structure of the ECD2 domain of ABCA4, as well as in its interaction with all-trans-retinal. PMID:20404325

13-cis retinoic acid and isomerisation in paediatric oncology--is changing shape the key to success?

PubMed

Armstrong, Jane L; Redfern, Christopher P F; Veal, Gareth J

2005-05-01

Retinoic acid isomers have been used with some success as chemotherapeutic agents, most recently with 13-cis retinoic acid showing impressive clinical efficacy in the paediatric malignancy neuroblastoma. The aim of this commentary is to review the evidence that 13-cis retinoic acid is a pro-drug, and consider the implications of retinoid metabolism and isomerisation for the further development of retinoic acid for cancer therapy. The low binding affinity of 13-cis retinoic acid for retinoic acid receptors, low activity in gene expression assays and the accumulation of the all-trans isomer in cells treated with 13-cis retinoic acid, coupled with the more-favourable pharmacokinetic profile of 13-cis retinoic acid compared to other isomers, suggest that intracellular isomerisation to all-trans retinoic acid is the key process underlying the biological activity of 13-cis retinoic acid. Intracellular metabolism of all-trans retinoic acid by a positive auto-regulatory loop may result in clinical resistance to retinoic acid. Agents that block or reduce the metabolism of all-trans retinoic acid are therefore attractive targets for drug development. Devising strategies to deliver 13-cis retinoic acid to tumour cells and facilitate the intracellular isomerisation of 13-cis retinoic acid, while limiting metabolism of all-trans retinoic acid, may have a major impact on the efficacy of 13-cis retinoic acid in paediatric oncology.

Trans-equatorial migration routes, staging sites and wintering areas of a high-Arctic avian predator: the long-tailed Skua (Stercorarius longicaudus).

PubMed

Gilg, Olivier; Moe, Børge; Hanssen, Sveinn Are; Schmidt, Niels Martin; Sittler, Benoît; Hansen, Jannik; Reneerkens, Jeroen; Sabard, Brigitte; Chastel, Olivier; Moreau, Jérôme; Phillips, Richard A; Oudman, Thomas; Biersma, Elisabeth M; Fenstad, Anette A; Lang, Johannes; Bollache, Loïc

2013-01-01

The Long-tailed Skua, a small (<300 g) Arctic-breeding predator and seabird, is a functionally very important component of the Arctic vertebrate communities in summer, but little is known about its migration and winter distribution. We used light-level geolocators to track the annual movements of eight adult birds breeding in north-east Greenland (n = 3) and Svalbard (n = 5). All birds wintered in the Southern Hemisphere (mean arrival-departure dates on wintering grounds: 24 October-21 March): five along the south-west coast of Africa (0-40°S, 0-15°E), in the productive Benguela upwelling, and three further south (30-40°S, 0-50°E), in an area extending into the south-west Indian Ocean. Different migratory routes and rates of travel were documented during post-breeding (345 km d(-1) in late August-early September) and spring migrations (235 km d(-1) in late April) when most birds used a more westerly flyway. Among the different staging areas, a large region off the Grand Banks of Newfoundland appears to be the most important. It was used in autumn by all but one of the tracked birds (from a few days to three weeks) and in spring by five out of eight birds (from one to more than six weeks). Two other staging sites, off the Iberian coast and near the Azores, were used by two birds in spring for five to six weeks. Over one year, individuals travelled between 43,900 and 54,200 km (36,600-45,700 when excluding staging periods) and went as far as 10,500-13,700 km (mean 12,800 km) from their breeding sites. This study has revealed important marine areas in both the south and north Atlantic Ocean. Sustainable management of these ocean basins will benefit Long-tailed Skuas as well as other trans-equatorial migrants from the Arctic.

Efficient Ligation of the Schistosoma Hammerhead Ribozyme †

PubMed Central

Canny, Marella D.; Jucker, Fiona M.; Pardi, Arthur

2011-01-01

The hammerhead ribozyme from Schistosoma mansoni is the best characterized of the natural hammerhead ribozymes. Biophysical, biochemical, and structural studies have shown that the formation of the loop-loop tertiary interaction between stems I and II alters the global folding, cleavage kinetics, and conformation of the catalytic core of this hammerhead, leading to a ribozyme that is readily cleaved under physiological conditions. This study investigates the ligation kinetics and the internal equilibrium between cleavage and ligation for the Schistosoma hammerhead. Single turnover kinetic studies on a construct where the ribozyme cleaves and ligates substrate(s) in trans showed up to 23% ligation when starting from fully cleaved products. This was achieved by a ~2,000-fold increase in the rate of ligation compared to a minimal hammerhead without the loop-loop tertiary interaction, yielding an internal equilibrium that ranges from 2–3 at physiological Mg2+ ion concentrations (0.1 –1 mM). Thus, the natural Schistosoma hammerhead ribozyme is almost as efficient at ligation as it is at cleavage. The results here are consistent with a model where formation of the loop-loop tertiary interaction leads to a higher population of catalytically active molecules, and where formation of this tertiary interaction has a much larger effect on the ligation than the cleavage activity of the Schistosoma hammerhead ribozyme. PMID:17319693

Underwater glider observations of the ongoing El Niño

NASA Astrophysics Data System (ADS)

Rudnick, D. L.; Owens, B.; Johnston, S.; Karnauskas, K.

2016-02-01

We report on observations by underwater gliders in the equatorial current system along 93°W and 95°W between 2°S and 2°N starting in October 2013 and continuing through the present. The project Repeat Observations by Gliders in the Equatorial Region (ROGER) was conceived with the intention of using underwater gliders to make repeat sections across equatorial system to quantify the location and strength of the Equatorial Undercurrent (EUC) and the equatorial front. ROGER serendipitously started near the beginning of a series of events that have led to the El Niño currently ongoing. We use Spray underwater gliders equipped with CTDs and ADCPs to measure pressure, temperature, salinity, velocity and chlorophyll fluorescence in a series of deployments from the Galapagos Islands. At the time of writing of this abstract, we have completed 15 glider missions, with 3 currently underway. Gliders have completed 7300 dives to as deep as 1000 m, traveling 27,000 km in 1600 glider-days. To our knowledge, this is the most extensive glider data set ever collected in the equatorial current system. With 6-km horizontal spacing between profiles, these more than 30 sections across the equator allow a finely-resolved look at the passage of Kelvin waves that establish El Niño. The Kelvin waves are manifest as deepening of the thermocline, warming of the surface, strengthening of the EUC, and northward migration of the equatorial front. We will present an up-to-date account of the continuing glider observations of El Niño.

Multiple loop conformations of peptides predicted by molecular dynamics simulations are compatible with nuclear magnetic resonance.

PubMed

Carstens, Heiko; Renner, Christian; Milbradt, Alexander G; Moroder, Luis; Tavan, Paul

2005-03-29

The affinity and selectivity of protein-protein interactions can be fine-tuned by varying the size, flexibility, and amino acid composition of involved surface loops. As a model for such surface loops, we study the conformational landscape of an octapeptide, whose flexibility is chemically steered by a covalent ring closure integrating an azobenzene dye into and by a disulfide bridge additionally constraining the peptide backbone. Because the covalently integrated azobenzene dyes can be switched by light between a bent cis state and an elongated trans state, six cyclic peptide models of strongly different flexibilities are obtained. The conformational states of these peptide models are sampled by NMR and by unconstrained molecular dynamics (MD) simulations. Prototypical conformations and the free-energy landscapes in the high-dimensional space spanned by the phi/psi angles at the peptide backbone are obtained by clustering techniques from the MD trajectories. Multiple open-loop conformations are shown to be predicted by MD particularly in the very flexible cases and are shown to comply with the NMR data despite the fact that such open-loop conformations are missing in the refined NMR structures.

Concept development for the ITER equatorial port visible/infrared wide angle viewing system

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reichle, R.; Beaumont, B.; Boilson, D.

2012-10-15

The ITER equatorial port visible/infrared wide angle viewing system concept is developed from the measurement requirements. The proposed solution situates 4 viewing systems in the equatorial ports 3, 9, 12, and 17 with 4 views each (looking at the upper target, the inner divertor, and tangentially left and right). This gives sufficient coverage. The spatial resolution of the divertor system is 2 times higher than the other views. For compensation of vacuum-vessel movements, an optical hinge concept is proposed. Compactness and low neutron streaming is achieved by orienting port plug doglegs horizontally. Calibration methods, risks, and R and D topicsmore » are outlined.« less

Crystal structure of bis­[trans-(1,4,8,11-tetra­aza­cyclo­tetra­decane-κ4 N)bis­(thio­cyanato-κN)chromium(III)] tetra­chlorido­zincate from synchrotron data

PubMed Central

Moon, Dohyun; Ryoo, Keon Sang; Choi, Jong-Ha

2015-01-01

The structure of the title compound, [Cr(NCS)2(cyclam)]2[ZnCl4] (cyclam = 1,4,8,11-tetra­aza­cyclo­tetra­decane, C10H24N4), has been determined from synchrotron data. The asymmetric unit contains two independent halves of the CrIII complex cations and half of a tetra­chlorido­zincate anion. In each complex cation, the CrIII atom is coordinated by the four N atoms of the cyclam ligand in the equatorial plane and by two N-bound NCS− anions in a trans axial arrangement, displaying a distorted octa­hedral geometry with crystallographic inversion symmetry. The mean Cr—N(cyclam) and Cr—N(NCS) bond lengths are 2.065 (4) and 1.995 (6) Å, respectively. The macrocyclic cyclam moieties adopt centrosymmetric trans-III configurations with six- and five-membered chelate rings in chair and gauche configurations, respectively. The [ZnCl4]2− anion, which lies about a twofold rotation axis, has a slightly distorted tetra­hedral geometry. The crystal packing is stabilized by hydrogen-bonding inter­actions between the N—H groups of the cyclam ligands, the S atoms of the NCS− groups and the Cl− ligands of the anion. PMID:25995875

Mission Capability Gains from Multi-Mode Propulsion Thrust Variations on a Variety Spacecraft Orbital Maneuvers

DTIC Science & Technology

2011-03-01

Geocentric -Equatorial Reference Frame2 ....................................................................... 31  Figure 8: Perifocal and Geocentric ...67  Figure 25: Mission 3 Geocentric Equatorial Reference Frame ...................................................... 69  Figure 26: Mission 3...Coordinate system, the Geocentric -Equatorial Reference frame and the reference frame depicted on one another is shown below. The following figures are from

Communications satellites in non-geostationary orbits

NASA Technical Reports Server (NTRS)

Price, Kent M.; Doong, Wen; Nguyen, Tuan Q.; Turner, Andrew E.; Weyandt, Charles

1988-01-01

The design of a satellite communications system in an orbit lower than GEO is described. Two sun-synchronous orbits which lie in the equatorial plane have been selected: (1) the apogee at constant time-of-day equatorial orbit, a highly eccentric orbit with five revolutions per day, which allows 77-135 percent more satellite mass to be placed in orbit than for GEO; and (2) the sun-synchronous 12-hour equatorial orbit, a circular orbit with two revolutions per day, which allows 23-29 percent more mass. The results of a life cycle economic analysis illustrate that nongeostationary satellite systems could be competitive with geostationary satellite systems.

Internal loop/bulge and hairpin loop of the iron-responsive element of ferritin mRNA contribute to maximal iron regulatory protein 2 binding and translational regulation in the iso-iron-responsive element/iso-iron regulatory protein family.

PubMed

Ke, Y; Sierzputowska-Gracz, H; Gdaniec, Z; Theil, E C

2000-05-23

Iron-responsive elements (IREs), a natural group of mRNA-specific sequences, bind iron regulatory proteins (IRPs) differentially and fold into hairpins [with a hexaloop (HL) CAGUGX] with helical distortions: an internal loop/bulge (IL/B) (UGC/C) or C-bulge. C-bulge iso-IREs bind IRP2 more poorly, as oligomers (n = 28-30), and have a weaker signal response in vivo. Two trans-loop GC base pairs occur in the ferritin IRE (IL/B and HL) but only one in C-bulge iso-IREs (HL); metal ions and protons perturb the IL/B [Gdaniec et al. (1998) Biochemistry 37, 1505-1512]. IRE function (translation) and physical properties (T(m) and accessibility to nucleases) are now compared for IL/B and C-bulge IREs and for HL mutants. Conversion of the IL/B into a C-bulge by a single deletion in the IL/B or by substituting the HL CG base pair with UA both derepressed ferritin synthesis 4-fold in rabbit reticulocyte lysates (IRP1 + IRP2), confirming differences in IRP2 binding observed for the oligomers. Since the engineered C-bulge IRE was more helical near the IL/B [Cu(phen)(2) resistant] and more stable (T(m) increased) and the HL mutant was less helical near the IL/B (ribonuclease T1 sensitive) and less stable (T(m) decreased), both CG trans-loop base pairs contribute to maximum IRP2 binding and translational regulation. The (1)H NMR spectrum of the Mg-IRE complex revealed, in contrast to the localized IL/B effects of Co(III) hexaammine observed previously, perturbation of the IL/B plus HL and interloop helix. The lower stability and greater helix distortion in the ferritin IL/B-IRE compared to the C-bulge iso-IREs create a combinatorial set of RNA/protein interactions that control protein synthesis rates with a range of signal sensitivities.

An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA

PubMed Central

Robledo, Marta; Schlüter, Jan-Philip; Loehr, Lars O.; Linne, Uwe; Albaum, Stefan P.; Jiménez-Zurdo, José I.; Becker, Anke

2018-01-01

Adjustment of cell cycle progression is crucial for bacterial survival and adaptation under adverse conditions. However, the understanding of modulation of cell cycle control in response to environmental changes is rather incomplete. In α-proteobacteria, the broadly conserved cell cycle master regulator CtrA underlies multiple levels of control, including coupling of cell cycle and cell differentiation. CtrA levels are known to be tightly controlled through diverse transcriptional and post-translational mechanisms. Here, small RNA (sRNA)-mediated post-transcriptional regulation is uncovered as an additional level of CtrA fine-tuning. Computational predictions as well as transcriptome and proteome studies consistently suggested targeting of ctrA and the putative cold shock chaperone cspA5 mRNAs by the trans-encoded sRNA (trans-sRNA) GspR (formerly SmelC775) in several Sinorhizobium species. GspR strongly accumulated in the stationary growth phase, especially in minimal medium (MM) cultures. Lack of the gspR locus confers a fitness disadvantage in competition with the wild type, while its overproduction hampers cell growth, suggesting that this riboregulator interferes with cell cycle progression. An eGFP-based reporter in vivo assay, involving wild-type and mutant sRNA and mRNA pairs, experimentally confirmed GspR-dependent post-transcriptional down-regulation of ctrA and cspA5 expression, which most likely occurs through base-pairing to the respective mRNA. The energetically favored secondary structure of GspR is predicted to comprise three stem-loop domains, with stem-loop 1 and stem-loop 3 targeting ctrA and cspA5 mRNA, respectively. Moreover, this work reports evidence for post-transcriptional control of ctrA by CspA5. Thus, this regulation and GspR-mediated post-transcriptional repression of ctrA and cspA5 expression constitute a coherent feed-forward loop, which may enhance the negative effect of GspR on CtrA levels. This novel regulatory circuit involving the riboregulator GspR, CtrA, and a cold shock chaperone may contribute to fine-tuning of ctrA expression. PMID:29740411

An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA.

PubMed

Robledo, Marta; Schlüter, Jan-Philip; Loehr, Lars O; Linne, Uwe; Albaum, Stefan P; Jiménez-Zurdo, José I; Becker, Anke

2018-01-01

Adjustment of cell cycle progression is crucial for bacterial survival and adaptation under adverse conditions. However, the understanding of modulation of cell cycle control in response to environmental changes is rather incomplete. In α-proteobacteria, the broadly conserved cell cycle master regulator CtrA underlies multiple levels of control, including coupling of cell cycle and cell differentiation. CtrA levels are known to be tightly controlled through diverse transcriptional and post-translational mechanisms. Here, small RNA (sRNA)-mediated post-transcriptional regulation is uncovered as an additional level of CtrA fine-tuning. Computational predictions as well as transcriptome and proteome studies consistently suggested targeting of ctrA and the putative cold shock chaperone cspA5 mRNAs by the trans- encoded sRNA ( trans- sRNA) GspR (formerly SmelC775) in several Sinorhizobium species. GspR strongly accumulated in the stationary growth phase, especially in minimal medium (MM) cultures. Lack of the gspR locus confers a fitness disadvantage in competition with the wild type, while its overproduction hampers cell growth, suggesting that this riboregulator interferes with cell cycle progression. An eGFP-based reporter in vivo assay, involving wild-type and mutant sRNA and mRNA pairs, experimentally confirmed GspR-dependent post-transcriptional down-regulation of ctrA and cspA5 expression, which most likely occurs through base-pairing to the respective mRNA. The energetically favored secondary structure of GspR is predicted to comprise three stem-loop domains, with stem-loop 1 and stem-loop 3 targeting ctrA and cspA5 mRNA, respectively. Moreover, this work reports evidence for post-transcriptional control of ctrA by CspA5. Thus, this regulation and GspR-mediated post-transcriptional repression of ctrA and cspA5 expression constitute a coherent feed-forward loop, which may enhance the negative effect of GspR on CtrA levels. This novel regulatory circuit involving the riboregulator GspR, CtrA, and a cold shock chaperone may contribute to fine-tuning of ctrA expression.

Multidrug resistance proteins restrain the intestinal absorption of trans-resveratrol in rats.

PubMed

Juan, M Emília; González-Pons, Eulalia; Planas, Joana M

2010-03-01

trans-Resveratrol, a natural antioxidant, has been described as a nutraceutic compound with important beneficial effects on health, but its low oral bioavailability hinders its therapeutic activity. Here, we studied the mechanisms of apical transport of trans-resveratrol in enterocytes and the role of ATP-binding cassette (ABC) transporters in the secretion of resveratrol glucuronide and sulfate resulting from the rapid intracellular metabolism. An intestinal perfusion method with recirculation in vivo was used in rats. Jejunal loops were perfused with increasing concentrations of trans-resveratrol and results showed that its uptake occurs by simple diffusion without the participation of a mediated transport. The apparent diffusion constant was 8.1 +/- 0.3 microL/(5 min.mg dry weight). The glycoprotein-P (Pgp, ABCB1), multidrug resistance-associated protein 2 (MRP2, ABCC2), and breast cancer resistance protein (BCRP, ABCG2) located in the apical membrane of enterocytes were investigated using specific inhibitors. The Pgp inhibitors verapamil (5 micromol/L) and cyclosporin A (5 micromol/L) did not affect the efflux of trans-resveratrol and its conjugates. The MRP2 inhibitors probenecid (2 mmol/L) and MK571 (10 micromol/L) reduced the efflux of glucuronide by 61 and 55%, respectively, and of sulfate by 43 and 28%, respectively. The BCRP inhibitor Ko143 (0.5 micromol/L) decreased the secretion of glucuronide by 64% and of sulfate by 46%. Our experiments identify MRP2 and BCRP as the 2 apical transporters involved in the efflux of resveratrol conjugates.

Equatorial symmetry of Boussinesq convective solutions in a rotating spherical shell allowing rotation of the inner and outer spheres

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kimura, Keiji; Takehiro, Shin-ichi; Yamada, Michio

2014-08-15

We investigate properties of convective solutions of the Boussinesq thermal convection in a moderately rotating spherical shell allowing the respective rotation of the inner and outer spheres due to the viscous torque of the fluid. The ratio of the inner and outer radii of the spheres, the Prandtl number, and the Taylor number are fixed to 0.4, 1, and 500{sup 2}, respectively. The Rayleigh number is varied from 2.6 × 10{sup 4} to 3.4 × 10{sup 4}. In this parameter range, the behaviours of obtained asymptotic convective solutions are almost similar to those in the system whose inner and outermore » spheres are restricted to rotate with the same constant angular velocity, although the difference is found in the transition process to chaotic solutions. The convective solution changes from an equatorially symmetric quasi-periodic one to an equatorially symmetric chaotic one, and further to an equatorially asymmetric chaotic one, as the Rayleigh number is increased. This is in contrast to the transition in the system whose inner and outer spheres are assumed to rotate with the same constant angular velocity, where the convective solution changes from an equatorially symmetric quasi-periodic one, to an equatorially asymmetric quasi-periodic one, and to equatorially asymmetric chaotic one. The inner sphere rotates in the retrograde direction on average in the parameter range; however, it sometimes undergoes the prograde rotation when the convective solution becomes chaotic.« less

Genotype distribution of cervical human papillomavirus DNA in women with cervical lesions in Bioko, Equatorial Guinea

PubMed Central

García-Espinosa, Benjamín; Nieto-Bona, Ma Paz; Rueda, Sonsoles; Silva-Sánchez, Luís Fernando; Piernas-Morales, Ma Concepción; Carro-Campos, Patricia; Cortés-Lambea, Luís; Moro-Rodríguez, Ernesto

2009-01-01

Background The HVP vaccine is a useful tool for preventing cervical cancer. The purpose of this study is to determine the most frequent HPV genotypes in Equatorial Guinea in order to develop future vaccination strategies to apply in this country. Methods A campaign against cervical cancer was carried out in the area on a total of 1,680 women. 26 of the women, following cytological screening, were treated surgically with a loop electrosurgical excision procedure (LEEP). Cases were studied histologically and were genotyped from paraffin blocks by applying a commercial kit that recognized 35 HPV types. Results Cytological diagnoses included 17 HSIL, 1 LSIL, 5 ASC-H and 3 AGUS. Histological diagnosis resulted in 3 cases of microinvasive squamous cell carcinoma stage IA of FIGO, 9 CIN-3, 8 CIN-2, 2 CIN-1, 3 flat condylomas and mild dysplasia of the endocervical epithelium. Fifteen of twenty-five cases genotyped were positive for HPV (60%). HPV 16 and 33 were identified in four cases each, HPV 58 in two other cases, and HPV 18, 31, 52, and 82 in one case, with one HPV 16 and 58 coinfection. Conclusion The frequency of HPV types in the African area varies in comparison to other regions, particularly in Europe and USA. Vaccination against the five most common HPV types (16, 33, 58, 18, and 31) should be considered in the geographic region of West Africa and specifically in Equatorial Guinea. PMID:19740435

Genotype distribution of cervical human papillomavirus DNA in women with cervical lesions in Bioko, Equatorial Guinea.

PubMed

García-Espinosa, Benjamín; Nieto-Bona, Ma Paz; Rueda, Sonsoles; Silva-Sánchez, Luís Fernando; Piernas-Morales, Ma Concepción; Carro-Campos, Patricia; Cortés-Lambea, Luís; Moro-Rodríguez, Ernesto

2009-09-09

The HVP vaccine is a useful tool for preventing cervical cancer. The purpose of this study is to determine the most frequent HPV genotypes in Equatorial Guinea in order to develop future vaccination strategies to apply in this country. A campaign against cervical cancer was carried out in the area on a total of 1,680 women. 26 of the women, following cytological screening, were treated surgically with a loop electrosurgical excision procedure (LEEP). Cases were studied histologically and were genotyped from paraffin blocks by applying a commercial kit that recognized 35 HPV types. Cytological diagnoses included 17 HSIL, 1 LSIL, 5 ASC-H and 3 AGUS. Histological diagnosis resulted in 3 cases of microinvasive squamous cell carcinoma stage IA of FIGO, 9 CIN-3, 8 CIN-2, 2 CIN-1, 3 flat condylomas and mild dysplasia of the endocervical epithelium. Fifteen of twenty-five cases genotyped were positive for HPV (60%). HPV 16 and 33 were identified in four cases each, HPV 58 in two other cases, and HPV 18, 31, 52, and 82 in one case, with one HPV 16 and 58 coinfection. The frequency of HPV types in the African area varies in comparison to other regions, particularly in Europe and USA. Vaccination against the five most common HPV types (16, 33, 58, 18, and 31) should be considered in the geographic region of West Africa and specifically in Equatorial Guinea.

Perihelion precession caused by solar oblateness variation in equatorial and ecliptic coordinate systems

NASA Astrophysics Data System (ADS)

Xu, Yan; Shen, Yunzhong; Xu, Guochang; Shan, Xinjian; Rozelot, Jean-Pierre

2017-12-01

Analytic solutions of planetary orbits disturbed by solar gravitational oblateness have been derived and given in the solar equatorial coordinate system, although the results usually have to be represented in the ecliptic coordinate system. The perihelion precession of interest in the solar equatorial and ecliptic coordinate systems is partly periodical and not negligible. The result shows that the difference in Mercury's perihelion precession between the solar equatorial plane and the ecliptic plane can reach a magnitude of 126708J2, which is even bigger than the perihelion precession itself (101516J2). Due to the temporal variability of the oblateness, the periodic variation of the J2 term, instead of simply a constant, is taken into account and solutions are derived. In the case of Mercury, the periodic J2 has an effect of nearly 0.8 per cent of the secular perihelion precession of Mercury. This indicates that a better understanding of the solar oblateness is required, which could be done through observation in the solar orbits instead of on Earth.

Evidence for the Maintenance of Slowly Varying Equatorial Currents by Intraseasonal Variability

NASA Astrophysics Data System (ADS)

Greatbatch, Richard J.; Claus, Martin; Brandt, Peter; Matthießen, Jan-Dirk; Tuchen, Franz Philip; Ascani, François; Dengler, Marcus; Toole, John; Roth, Christina; Farrar, J. Thomas

2018-02-01

Recent evidence from mooring data in the equatorial Atlantic reveals that semiannual and longer time scale ocean current variability is close to being resonant with equatorial basin modes. Here we show that intraseasonal variability, with time scales of tens of days, provides the energy to maintain these resonant basin modes against dissipation. The mechanism is analogous to that by which storm systems in the atmosphere act to maintain the atmospheric jet stream. We demonstrate the mechanism using an idealized model setup that exhibits equatorial deep jets. The results are supported by direct analysis of available mooring data from the equatorial Atlantic Ocean covering a depth range of several thousand meters. The analysis of the mooring data suggests that the same mechanism also helps maintain the seasonal variability.

Extended Impact of Pin1 Catalytic Loop Phosphorylation Revealed by S71E Phosphomimetic.

PubMed

Mahoney, Brendan J; Zhang, Meiling; Zintsmaster, John S; Peng, Jeffrey W

2018-03-02

Pin1 is a two-domain human protein that catalyzes the cis-trans isomerization of phospho-Ser/Thr-Pro (pS/T-P) motifs in numerous cell-cycle regulatory proteins. These pS/T-P motifs bind to Pin1's peptidyl-prolyl isomerase (PPIase) domain in a catalytic pocket, between an extended catalytic loop and the PPIase domain core. Previous studies showed that post-translational phosphorylation of S71 in the catalytic loop decreases substrate binding affinity and isomerase activity. To define the origins for these effects, we investigated a phosphomimetic Pin1 mutant, S71E-Pin1, using solution NMR. We find that S71E perturbs not only its host loop but also the nearby PPIase core. The perturbations identify a local network of hydrogen bonds and salt bridges that is more extended than previously thought, and includes interactions between the catalytic loop and the α2/α3 turn in the PPIase core. Explicit-solvent molecular dynamics simulations and phylogenetic analysis suggest that these interactions act as conserved "latches" between the loop and PPIase core that enhance binding of phosphorylated substrates, as they are absent in PPIases lacking pS/T-P specificity. Our results suggest that S71 is a hub residue within an electrostatic network primed for phosphorylation, and may illustrate a common mechanism of phosphorylation-mediated allostery. Copyright © 2018 Elsevier Ltd. All rights reserved.

A Reusable Design for Precision Lunar Landing Systems

NASA Technical Reports Server (NTRS)

Fuhrman, Linda; Brand, Timothy; Fill, Tom; Norris, Lee; Paschall, Steve

2005-01-01

The top-level architecture to accomplish NASA's Vision for Space Exploration is to use Lunar missions and systems not just as an end in themselves, but also as testbeds for the more ambitious goals of Human Mars Exploration (HME). This approach means that Lunar missions and systems are most likely going to be targeted for (Lunar) polar missions, and also for long-duration (months) surface stays. This overacting theme creates basic top-level requirements for any next-generation lander system: 1) Long duration stays: a) Multiple landers in close proximity; b) Pinpoint landings for "surface rendezvous"; c) Autonomous landing of pre-positioned assets; and d) Autonomous Hazard Detection and Avoidance. 2) Polar and deep-crater landings (dark); 3) Common/extensible systems for Moon and Mars, crew and cargo. These requirements pose challenging technology and capability needs. Compare and contrast: 4) Apollo: a) 1 km landing accuracy; b) Lunar near-side (well imaged and direct-to-Earth com. possible); c) Lunar equatorial (landing trajectories offer best navigation support from Earth); d) Limited lighting conditions; e) Significant ground-in-the-loop operations; 5) Lunar Access: a) 10-100m landing precision; b) "Anywhere" access includes polar (potentially poor nav. support from Earth) and far side (poor gravity and imaging; no direct-to-Earth com); c) "Anytime" access includes any lighting condition (including dark); d) Full autonomous landing capability; e) Extensible design for tele-operation or operator-in-the-loop; and f) Minimal ground support to reduce operations costs. The Lunar Access program objectives, therefore, are to: a) Develop a baseline Lunar Precision Landing System (PLS) design to enable pinpoint "anywhere, anytime" landings; b) landing precision 10m-100m; c) Any LAT, LON; and d) Any lighting condition; This paper will characterize basic features of the next generation Lunar landing system, including trajectory types, sensor suite options and a reference system architecture.

Migration Routes and Staging Areas of Trans-Saharan Turtle Doves Appraised from Light-Level Geolocators

PubMed Central

Eraud, Cyril; Rivière, Marcel; Lormée, Hervé; Fox, James W.; Ducamp, Jean-Jacques; Boutin, Jean-Marie

2013-01-01

The identification of migration routes, wintering grounds and stopover sites are crucial issues for the understanding of the Palearctic-African bird migration system as well as for the development of relevant conservation strategies for trans-Saharan migrants. Using miniaturized light-level geolocators we report a comprehensive and detailed year round track of a granivorous trans-Saharan migrant, the European Turtle Dove (Streptopelia turtur). From five recovered loggers, our data provide new insights on migratory journeys and winter destinations of Turtle Doves originating from a breeding population in Western France. Data confirm that Turtle Doves wintered in West Africa. The main wintering area encompassed Western Mali, the Inner Delta Niger and the Malian/Mauritanian border. Some individuals also extended their wintering ranges over North Guinea, North-West of Burkina Faso and the Ivory-Coast. Our results reveal that all individuals did not spend the winter period at a single location; some of them experienced a clear eastward shift of several hundred kilometres. We also found evidence for a loop migration pattern, with a post-breeding migration flyway lying west of the spring route. Finally, we found that on their way back to breeding grounds Turtle Doves needed to refuel after crossing the Sahara desert. Contrary to previous suggestions, our data reveal that birds used stopover sites for several weeks, presumably in Morocco and North Algeria. This later finding is a crucial issue for future conservation strategies because environmental conditions on these staging areas might play a pivotal role in population dynamics of this declining species. PMID:23544064

The antidepressant-like effect of trans-astaxanthin involves the serotonergic system.

PubMed

Jiang, Xi; Zhu, Keqi; Xu, Quanyi; Wang, Guokang; Zhang, Jiajia; Cao, Rongrong; Ye, Jiang; Yu, Xuefeng

2017-04-11

The antidepressant-like effect of trans-astaxanthin, a compound present rich in algae, was evaluated through behavioral and neurochemical methods. Results showed that trans-astaxanthin treatment significantly decreased the immobility time in force swim test and tail suspension test, but did not influence locomotor activity. Trans-astaxanthin treatment did not effectively antagonize hypothermia and ptosis induced by reserpine. However, pre-treatment with para-chlorophenylalanine abolished the anti-immobility effect of trans-astaxanthin in force swim and tail suspension test. These results suggested that the mechanism of antidepressant-like effect of trans-astaxanthin may involve the serotonergic system, but not noradrenaline system. This hypothesis was confirmed by neurochemical assays which showed that trans-astaxanthin increased serotonin levels in the hippocampus, frontal cortex, striatum and hypothalamus. Furthermore, our data suggested that trans-astaxanthin decreased indoleamine 2, 3-dioxygenase activity in the hippocampus, frontal cortex and hypothalamus. Inhibition of indoleamine 2,3-dioxygenase activity subsequently decreased the kynurenine/tryptophan ratio and increased the serotonin/tryptophan ratio in these brain regions. Taken together, these findings indicate that the antidepressant-like effect of trans-astaxanthin involves the serotonergic system.

The antidepressant-like effect of trans-astaxanthin involves the serotonergic system

PubMed Central

Jiang, Xi; Zhu, Keqi; Xu, Quanyi; Wang, Guokang; Zhang, Jiajia; Cao, Rongrong; Ye, Jiang; Yu, Xuefeng

2017-01-01

The antidepressant-like effect of trans-astaxanthin, a compound present rich in algae, was evaluated through behavioral and neurochemical methods. Results showed that trans-astaxanthin treatment significantly decreased the immobility time in force swim test and tail suspension test, but did not influence locomotor activity. Trans-astaxanthin treatment did not effectively antagonize hypothermia and ptosis induced by reserpine. However, pre-treatment with para-chlorophenylalanine abolished the anti-immobility effect of trans-astaxanthin in force swim and tail suspension test. These results suggested that the mechanism of antidepressant-like effect of trans-astaxanthin may involve the serotonergic system, but not noradrenaline system. This hypothesis was confirmed by neurochemical assays which showed that trans-astaxanthin increased serotonin levels in the hippocampus, frontal cortex, striatum and hypothalamus. Furthermore, our data suggested that trans-astaxanthin decreased indoleamine 2, 3-dioxygenase activity in the hippocampus, frontal cortex and hypothalamus. Inhibition of indoleamine 2,3-dioxygenase activity subsequently decreased the kynurenine/tryptophan ratio and increased the serotonin/tryptophan ratio in these brain regions. Taken together, these findings indicate that the antidepressant-like effect of trans-astaxanthin involves the serotonergic system. PMID:28424423

NF-κB– and AP-1–Mediated DNA Looping Regulates Osteopontin Transcription in Endotoxin-Stimulated Murine Macrophages

PubMed Central

Zhao, Wei; Wang, Lijuan; Zhang, Meng; Wang, Peng; Zhang, Lei; Yuan, Chao; Qi, Jianni; Qiao, Yu; Kuo, Paul C.; Gao, Chengjiang

2013-01-01

Osteopontin (OPN) is expressed by various immune cells and modulates both innate and adaptive immune responses. However, the molecular mechanisms that control opn gene expression, especially at the chromatin level, remain largely unknown. We have previously demonstrated many specific cis- and trans-regulatory elements that determine the extent of endotoxin (LPS)-mediated induction of OPN synthesis in murine macrophages. In the present study, we confirm that NF-κB also plays an important role in the setting of LPS-stimulated OPN expression through binding to a distal regulatory element. Importantly, we demonstrate that LPS stimulates chromosomal loops in the OPN promoter between NF-κB binding site and AP-1 binding site using chromosome conformation capture technology. The crucial role of NF-κB and AP-1 in LPS-stimulated DNA looping was confirmed, as small interfering RNA knock-down of NF-κB p65 and AP-1 c-Jun exhibited decreased levels of DNA looping. Furthermore, we demonstrate that p300 can form a complex with NF-κB and AP-1 and is involved in DNA looping and LPS-induced OPN expression. Therefore, we have identified an essential mechanism to remodel the local chromatin structures and spatial conformations to regulate LPS-induced OPN expression. PMID:21257959

Coronal hole boundaries evolution at small scales. I. EIT 195 Å  and TRACE 171 Å view

NASA Astrophysics Data System (ADS)

Madjarska, M. S.; Wiegelmann, T.

2009-09-01

Aims: We aim to study the small-scale evolution at the boundaries of an equatorial coronal hole connected with a channel of open magnetic flux to the polar region and an “isolated” one in the extreme-ultraviolet spectral range. We determine the spatial and temporal scale of these changes. Methods: Imager data from TRACE in the Fe ix/x 171 Å passband and EIT on-board Solar and Heliospheric Observatory in the Fe xii 195 Å passband were analysed. Results: We found that small-scale loops known as bright points play an essential role in coronal hole boundary evolution at small scales. Their emergence and disappearance continuously expand or contract coronal holes. The changes appear to be random on a time scale comparable to the lifetime of the loops seen at these temperatures. No signature was found for a major energy release during the evolution of the loops. Conclusions: Although coronal holes seem to maintain their general shape during a few solar rotations, a closer look at their day-by-day and even hour-by-hour evolution demonstrates significant dynamics. The small-scale loops (10´´-40´´ and smaller) which are abundant along coronal hole boundaries contribute to the small-scale evolution of coronal holes. Continuous magnetic reconnection of the open magnetic field lines of the coronal hole and the closed field lines of the loops in the quiet Sun is more likely to take place. Movies are only available in electronic form at http://www.aanda.org

Rotating elastic string loops in flat and black hole spacetimes: stability, cosmic censorship and the Penrose process

NASA Astrophysics Data System (ADS)

Natário, José; Queimada, Leonel; Vicente, Rodrigo

2018-04-01

We rederive the equations of motion for relativistic strings, that is, one-dimensional elastic bodies whose internal energy depends only on their stretching, and use them to study circular string loops rotating in the equatorial plane of flat and black hole spacetimes. We start by obtaining the conditions for equilibrium, and find that: (i) if the string’s longitudinal speed of sound does not exceed the speed of light then its radius when rotating in Minkowski’s spacetime is always larger than its radius when at rest; (ii) in Minkowski’s spacetime, equilibria are linearly stable for rotation speeds below a certain threshold, higher than the string’s longitudinal speed of sound, and linearly unstable for some rotation speeds above it; (iii) equilibria are always linearly unstable in Schwarzschild’s spacetime. Moreover, we study interactions of a rotating string loop with a Kerr black hole, namely in the context of the weak cosmic censorship conjecture and the Penrose process. We find that: (i) elastic string loops that satisfy the null energy condition cannot overspin extremal black holes; (ii) elastic string loops that satisfy the dominant energy condition cannot increase the maximum efficiency of the usual particle Penrose process; (iii) if the dominant energy condition (but not the weak energy condition) is violated then the efficiency can be increased. This last result hints at the interesting possibility that the dominant energy condition may underlie the well known upper bounds for the efficiencies of energy extraction processes (including, for example, superradiance).

The retromer subunit Vps26 has an arrestin fold and binds Vps35 through its C-terminal domain.

PubMed

Shi, Hang; Rojas, Raul; Bonifacino, Juan S; Hurley, James H

2006-06-01

The mammalian retromer complex consists of SNX1, SNX2, Vps26, Vps29 and Vps35, and retrieves lysosomal enzyme receptors from endosomes to the trans-Golgi network. The structure of human Vps26A at 2.1-A resolution reveals two curved beta-sandwich domains connected by a polar core and a flexible linker. Vps26 has an unpredicted structural relationship to arrestins. The Vps35-binding site on Vps26 maps to a mobile loop spanning residues 235-246, near the tip of the C-terminal domain. The loop is phylogenetically conserved and provides a mechanism for Vps26 integration into the complex that leaves the rest of the structure free for engagements with membranes and for conformational changes. Hydrophobic residues and a glycine in this loop are required for integration into the retromer complex and endosomal localization of human Vps26, and for the function of yeast Vps26 in carboxypeptidase Y sorting.

Long waves in the eastern equatorial pacific ocean: a view from a geostationary satellite.

PubMed

Legeckis, R

1977-09-16

During 1975, westward-moving long waves with a period of about 25 days and a wavelength of 1000 kilometers were observed at a sea surface temperature front in the equatorial Pacific on infrared images obtained by a geostationary environmental satellite system. The absence of these waves during 1976, and the above-average equatorial sea surface temperatures during 1976, may be related to a decrease in the southeasterly trade winds during that year.

Coccolithophore export production and seasonal variation from a trans-Atlantic array of sediment trap moorings (NW Africa to Caribbean)

NASA Astrophysics Data System (ADS)

Guerreiro, C. V.; Baumann, K. H.; Brummer, G. J. A.; Fischer, G.; Korte, L.; Stuut, J. B. W.

2016-02-01

In this study, we contribute to disclose the ecology and seasonal variability of coccolithophores, to improve their use as proxies for environmental variability in the Equatorial Atlantic Ocean. To this aim, the coccolithophore export fluxes and species composition were investigated from a trans-Atlantic array of sediment trap moorings from NW Africa (Cape Blanc) into the Caribbean (Barbados) (i.e., CB at 20°N/52ºW: M1 at 12ºN/23ºW; M2 at 14ºN/37ºW; M4 at 12ºN/49ºW). Each of the sediment trap devices was deployed at 1200 m depth, sampling settling particles at two-week intervals, and covering a full year (Oct. 2012 to Oct. 2013). First results show important contrasts between both ends of the trans-Atlantic array: total coccolith fluxes were much higher in the oligotrophic station M4 (western part of the basin) than in the highly productive waters off Cape Blanc (eastern edge of the basin), mostly due to the overwhelming dominance of the deep photic layer species Florisphaera profunda and Gladiolithus flabellatus. Off Cape Blanc, higher abundances of the placolith-bearing species Emiliania huxleyi and Gephyrocapsa spp. were found, more typical of the upper photic layer, while F. profunda decreases in relative abundance and G. flabellatus is almost absent, in comparison to M4. The presence of trans-Atlantic ecological gradients in terms of species diversity and prevalence of K- and r-selected species will be discussed with respect to the prevailing environmental conditions during the monitored period, including Saharan-dust deposition and the influence of the Amazon River plume.This study is part of ongoing multidisciplinary research in the study area, in the context of the projects "DUSTRAFFIC" and "TRAFFIC - Transatlantic Fluxes of Saharan Dust".

A disrupted molecular torus around Eta Carinae as seen in 12CO with ALMA

NASA Astrophysics Data System (ADS)

Smith, Nathan; Ginsburg, Adam; Bally, John

2018-03-01

We present Atacama Large Millimeter Array (ALMA) observations of 12CO 2-1 emission from circumstellar material around the massive star Eta Carinae (η Car). These observations reveal new structural details about the cool equatorial torus located ˜4000 au from the star. The CO torus is not a complete azimuthal loop, but rather, is missing its near side, which appears to have been cleared away. The missing material matches the direction of apastron in the eccentric binary system, making it likely that η Car's companion played an important role in disrupting portions of the torus soon after ejection. Molecular gas seen in ALMA data aligns well with the cool dust around η Car previously observed in mid-infrared (IR) maps, whereas hot dust resides at the inner surface of the molecular torus. The CO also coincides with the spatial and velocity structure of near-IR H2 emission. Together, these suggest that the CO torus seen by ALMA is actually the pinched waist of the Homunculus polar lobes, which glows brightly because it is close to the star and warmer than the poles. The near side of the torus appears to be a blowout, associated with fragmented equatorial ejecta. We discuss implications for the origin of various features north-west of the star. CO emission from the main torus implies a total gas mass in the range of 0.2-1 M⊙ (possibly up to 5 M⊙ or more, although with questionable assumptions). Deeper observations are needed to constrain CO emission from the cool polar lobes.

Representation of the equatorial stratospheric quasi-biennial oscillation in EOF phase space. [EOF (empirical orthogonal function)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wallace, J.M.; Panetta, R.L.; Estberg, J.

1993-06-15

A 35-year record of monthly mean zonal wind data for the equatorial stratosphere is represented in terms of a vector (radius and phase angle) in a two-dimensional phase space defined by the normalized expansion coefficients of the two leading empirical orthogonal functions (EOFs) of the vertical structure. The tip of the vector completes one nearly circular loop during each cycle of the quasi-biennial oscillation (QBO). Hence, its position and rate of progress along the orbit of the point provide a measure of the instantaneous amplitude and rate of phase progression of the QBO. Although the phase of the QBO bearsmore » little if any relation to calendar month, the rate of phase progression is strongly modulated by the first and second harmonics of the annual cycle, with a primary maximum in April/May, in agreement with previous studies based on the descent rates of easterly and westerly regimes. A simple linear prediction model is developed for the rate of phase progression, based on the phase of the QBO and the phase of the annual cycle. The model is capable of hindcasting the phase of the QBO to within a specified degree of accuracy approximately 50% longer than a default scheme based on the mean observed rate of phase progression of the QBO (1 cycle per 28.1 months). If the seasonal dependence is ignored, the prediction equation corresponds to the [open quotes]circle map,[close quotes] for which an extensive literature exists in dynamical systems theory. 17 refs., 14 figs., 2 tabs.« less

Spatio-Temporal Evolutions of Non-Orthogonal Equatorial Wave Modes Derived from Observations

NASA Astrophysics Data System (ADS)

Barton, C.; Cai, M.

2015-12-01

Equatorial waves have been studied extensively due to their importance to the tropical climate and weather systems. Historically, their activity is diagnosed mainly in the wavenumber-frequency domain. Recently, many studies have projected observational data onto parabolic cylinder functions (PCF), which represent the meridional structure of individual wave modes, to attain time-dependent spatial wave structures. In this study, we propose a methodology that seeks to identify individual wave modes in instantaneous fields of observations by determining their projections on PCF modes according to the equatorial wave theory. The new method has the benefit of yielding a closed system with a unique solution for all waves' spatial structures, including IG waves, for a given instantaneous observed field. We have applied our method to the ERA-Interim reanalysis dataset in the tropical stratosphere where the wave-mean flow interaction mechanism for the quasi-biennial oscillation (QBO) is well-understood. We have confirmed the continuous evolution of the selection mechanism for equatorial waves in the stratosphere from observations as predicted by the theory for the QBO. This also validates the proposed method for decomposition of observed tropical wave fields into non-orthogonal equatorial wave modes.

Stream traffic data archival, querying, and analysis with TransDec.

DOT National Transportation Integrated Search

2011-01-01

The goal of research was to extend the traffic data analysis of the TransDec (short for : Transportation Decision-Making) system, which was developed under METRANS 09-26 : research grant. The TransDec system is a real-data driven system to support de...

A new supramolecular chromium(III) complex: Synthesis, structural determination, optical study, magnetic and antibacterial activity

NASA Astrophysics Data System (ADS)

Dridi, Rihab; Dhieb, Cyrine; Cherni, Saoussen Namouchi; Boudjada, Nassira Chniba; Sadfi Zouaoui, Najla; Zid, Mohamed Faouzi

2018-01-01

A new chromium (III) complex 1,5-Naphthyridine Trans-diaquadioxalatochromate (III) dihydrate, had been synthesized by self-assembly of chromium (III) nitrate with oxalic acid and 1,5-Naphthyridine. The complex was characterized by X-ray diffraction, Fourier Transform Infrared spectroscopy, thermogravimetric analysis and UV-Visible spectroscopy. The crystal morphology was carried out using Bravais-Friedel-Donnay-Harker (BFDH) model. Single crystal X-Ray structure determination revealed that the complex posses two crystallographically independent Cr(III) centers. Each Cr(III) has a distorted octahedron geometry involving two axial O atoms from two water molecules and four equatorial O atoms from two oxalate dianions forming trans-[Cr(C2O4)2(H2O)2]- complex anions. The charge compensation is accomplished by the incorporation of 1,5-Naphthyridine cations. Connection between these entities is ensured by means of strong hydrogen bonds giving rise to 3D supramolecular architecture. Hirshfeld surface analysis and the related 2D fingerprint plots were used for decoding plausible intermolecular interactions in the crystal packing. The magnetic properties of the complex had been investigated and discussed in the context of its structure. The antimicrobial activity was evaluated by disc diffusion method highlighting an antagonistic effect of the synthesized complex against Gram-positive and Gram-negative species.

Equatorial radar system

NASA Technical Reports Server (NTRS)

Rukao, S.; Tsuda, T.; Sato, T.; Kato, S.

1989-01-01

A large clear air radar with the sensitivity of an incoherent scatter radar for observing the whole equatorial atmosphere up to 1000 km altitude is now being designed in Japan. The radar, called the Equatorial Radar, will be built in Pontianak, Kalimantan Island, Indonesia (0.03 N, 109.3 E). The system is a 47 MHz monostatic Doppler radar with an active phased array configuration similar to that of the MU radar in Japan, which has been in successful operation since 1983. It will have a PA product of more than 5 x 10(9) sq. Wm (P = average transmitter power, A = effective antenna aperture) with sensitivity more than 10 times that of the MU radar. This system configuration enables pulse-to-pulse beam steering within 25 deg from the zenith. As is the case of the MU radar, a variety of sophisticated operations will be made feasible under the supervision of the radar controller. A brief description of the system configuration is presented.

Trans-packaging of human immunodeficiency virus type 1 genome into Gag virus-like particles in Saccharomyces cerevisiae.

PubMed

Tomo, Naoki; Goto, Toshiyuki; Morikawa, Yuko

2013-03-26

Yeast is recognized as a generally safe microorganism and is utilized for the production of pharmaceutical products, including vaccines. We previously showed that expression of human immunodeficiency virus type 1 (HIV-1) Gag protein in Saccharomyces cerevisiae spheroplasts released Gag virus-like particles (VLPs) extracellularly, suggesting that the production system could be used in vaccine development. In this study, we further establish HIV-1 genome packaging into Gag VLPs in a yeast cell system. The nearly full-length HIV-1 genome containing the entire 5' long terminal repeat, U3-R-U5, did not transcribe gag mRNA in yeast. Co-expression of HIV-1 Tat, a transcription activator, did not support the transcription. When the HIV-1 promoter U3 was replaced with the promoter for the yeast glyceraldehyde-3-phosphate dehydrogenase gene, gag mRNA transcription was restored, but no Gag protein expression was observed. Co-expression of HIV-1 Rev, a factor that facilitates nuclear export of gag mRNA, did not support the protein synthesis. Progressive deletions of R-U5 and its downstream stem-loop-rich region (SL) to the gag start ATG codon restored Gag protein expression, suggesting that a highly structured noncoding RNA generated from the R-U5-SL region had an inhibitory effect on gag mRNA translation. When a plasmid containing the HIV-1 genome with the R-U5-SL region was coexpressed with an expression plasmid for Gag protein, the HIV-1 genomic RNA was transcribed and incorporated into Gag VLPs formed by Gag protein assembly, indicative of the trans-packaging of HIV-1 genomic RNA into Gag VLPs in a yeast cell system. The concentration of HIV-1 genomic RNA in Gag VLPs released from yeast was approximately 500-fold higher than that in yeast cytoplasm. The deletion of R-U5 to the gag gene resulted in the failure of HIV-1 RNA packaging into Gag VLPs, indicating that the packaging signal of HIV-1 genomic RNA present in the R-U5 to gag region functions similarly in yeast cells. Our data indicate that selective trans-packaging of HIV-1 genomic RNA into Gag VLPs occurs in a yeast cell system, analogous to a mammalian cell system, suggesting that yeast may provide an alternative packaging system for lentiviral RNA.

Productivity patterns in the equatorial Pacific over the last 30,000 years

NASA Astrophysics Data System (ADS)

Costa, Kassandra M.; Jacobel, Allison W.; McManus, Jerry F.; Anderson, Robert F.; Winckler, Gisela; Thiagarajan, Nivedita

2017-05-01

The equatorial Pacific traverses a number of productivity regimes, from the highly productive coastal upwelling along Peru to the near gyre-like productivity lows along the international dateline, making it an ideal target for investigating how biogeochemical systems respond to changing oceanographic conditions over time. However, conflicting reconstructions of productivity during periods of rapid climate change, like the last deglaciation, render the spatiotemporal response of equatorial Pacific productivity ambiguous. In this study, surface productivity since the last glacial period (30,000 years ago) is reconstructed from seven cores near the Line Islands, central equatorial Pacific, and integrated with productivity records from across the equatorial Pacific. Three coherent deglacial patterns in productivity are identified: (1) a monotonic glacial-Holocene increase in productivity, primarily along the Equator, associated with increasing nutrient concentrations over time; (2) a deglacial peak in productivity 15,000 years ago due to transient entrainment of nutrient rich southern-sourced deep waters; and (3) possible precessional cycles in productivity in the eastern equatorial Pacific that may be related to Intertropical Convergence Zone migration and potential interactions with El Niño-Southern Oscillation dynamics. These findings suggest that productivity was generally lower during the glacial period, a trend observed zonally across the equatorial Pacific, while deglacial peaks in productivity may be prominent only in the east.

Solar Cycle Effects on Equatorial Electrojet Strength and Low Latitude Ionospheric Variability (P10)

NASA Astrophysics Data System (ADS)

Veenadhari, B.; Alex, S.

2006-11-01

veena_iig@yahoo.co.in The most obvious indicators of the activity of a solar cycle are sunspots, flares, plages, and soon. These are intimately linked to the solar magnetic fields, heliospheric processes which exhibit complex but systematic variations. The changes in geomagnetic activity, as observed in the ground magnetic records follow systematic correspondence with the solar activity conditions. Thus the transient variations in the magnetic field get modified by differing solar conditions. Also the solar cycle influences the Earth causing changes in geomagnetic activity, the magnetosphere and the ionosphere. Daily variations in the ground magnetic field are produced by different current systems in the earth’s space environment flowing in the ionosphere and magnetosphere which has a strong dependence on latitude and longitude of the location. The north-south (Horizontal) configuration of the earth’s magnetic field over the equator is responsible for the narrow band of current system over the equatorial latitudes and is called the Equatorial electrojet (EEJ) and is a primary driver for Equatorial Ionization anomaly (EIA). Equatorial electric fields and plasma drifts play the fundamental roles on the morphology of the low latitude ionosphere and strongly vary during geomagnetically quiet and disturbed periods. Quantitative study is done to illustrate the development process of EEJ and its influence on ionospheric parameters. An attempt is also made to examine and discuss the response of the equatorial electrojet parameters to the fast varying conditions of solar wind and interplanetary parameters.

Trans-Amazon Drilling Project (TADP): origins and evolution of the forests, climate, and hydrology of the South American tropics

NASA Astrophysics Data System (ADS)

Baker, P. A.; Fritz, S. C.; Silva, C. G.; Rigsby, C. A.; Absy, M. L.; Almeida, R. P.; Caputo, M.; Chiessi, C. M.; Cruz, F. W.; Dick, C. W.; Feakins, S. J.; Figueiredo, J.; Freeman, K. H.; Hoorn, C.; Jaramillo, C.; Kern, A. K.; Latrubesse, E. M.; Ledru, M. P.; Marzoli, A.; Myrbo, A.; Noren, A.; Piller, W. E.; Ramos, M. I. F.; Ribas, C. C.; Trnadade, R.; West, A. J.; Wahnfried, I.; Willard, D. A.

2015-12-01

This article presents the scientific rationale for an ambitious ICDP drilling project to continuously sample Late Cretaceous to modern sediment in four different sedimentary basins that transect the equatorial Amazon of Brazil, from the Andean foreland to the Atlantic Ocean. The goals of this project are to document the evolution of plant biodiversity in the Amazon forests and to relate biotic diversification to changes in the physical environment, including climate, tectonism, and the surface landscape. These goals require long sedimentary records from each of the major sedimentary basins across the heart of the Brazilian Amazon, which can only be obtained by drilling because of the scarcity of Cenozoic outcrops. The proposed drilling will provide the first long, nearly continuous regional records of the Cenozoic history of the forests, their plant diversity, and the associated changes in climate and environment. It also will address fundamental questions about landscape evolution, including the history of Andean uplift and erosion as recorded in Andean foreland basins and the development of west-to-east hydrologic continuity between the Andes, the Amazon lowlands, and the equatorial Atlantic. Because many modern rivers of the Amazon basin flow along the major axes of the old sedimentary basins, we plan to locate drill sites on the margin of large rivers and to access the targeted drill sites by navigation along these rivers.

Trans-Amazon Drilling Project (TADP): origins and evolution of the forests, climate, and hydrology of the South American tropics

USGS Publications Warehouse

Baker, P.A.; Fritz, S.C.; Silva, C.G.; Rigsby, C.A.; Absy, M.L.; Almeida, R.P.; Caputo, Maria C.; Chiessi, C.M.; Cruz, F.W.; Dick, C.W.; Feakins, S.J.; Figueiredo, J.; Freeman, K.H.; Hoorn, C.; Jaramillo, C.A.; Kern, A.; Latrubesse, E.M.; Ledru, M.P.; Marzoli, A.; Myrbo, A.; Noren, A.; Piller, W.E.; Ramos, M.I.F.; Ribas, C.C.; Trinadade, R.; West, A.J.; Wahnfried, I.; Willard, Debra A.

2015-01-01

This article presents the scientific rationale for an ambitious ICDP drilling project to continuously sample Late Cretaceous to modern sediment in four different sedimentary basins that transect the equatorial Amazon of Brazil, from the Andean foreland to the Atlantic Ocean. The goals of this project are to document the evolution of plant biodiversity in the Amazon forests and to relate biotic diversification to changes in the physical environment, including climate, tectonism, and the surface landscape. These goals require long sedimentary records from each of the major sedimentary basins across the heart of the Brazilian Amazon, which can only be obtained by drilling because of the scarcity of Cenozoic outcrops. The proposed drilling will provide the first long, nearly continuous regional records of the Cenozoic history of the forests, their plant diversity, and the associated changes in climate and environment. It also will address fundamental questions about landscape evolution, including the history of Andean uplift and erosion as recorded in Andean foreland basins and the development of west-to-east hydrologic continuity between the Andes, the Amazon lowlands, and the equatorial Atlantic. Because many modern rivers of the Amazon basin flow along the major axes of the old sedimentary basins, we plan to locate drill sites on the margin of large rivers and to access the targeted drill sites by navigation along these rivers.

CD22 serves as a receptor for soluble IgM.

PubMed

Adachi, Takahiro; Harumiya, Satoru; Takematsu, Hiromu; Kozutsumi, Yasunori; Wabl, Matthias; Fujimoto, Manabu; Tedder, Thomas F

2012-01-01

CD22 (Siglec-2) is a B-cell membrane-bound lectin that recognizes glycan ligands containing α2,6-linked sialic acid (α2,6Sia) and negatively regulates signaling through the B-cell Ag receptor (BCR). Although CD22 has been investigated extensively, its precise function remains unclear due to acting multiple phases. Here, we demonstrate that CD22 is efficiently activated in trans by complexes of Ag and soluble IgM (sIgM) due to the presence of glycan ligands on sIgM. This result strongly suggests sIgM as a natural trans ligand for CD22. Also, CD22 appears to serve as a receptor for sIgM, which induces a negative feedback loop for B-cell activation similar to the Fc receptor for IgG (FcγRIIB). Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Unique ATPase site architecture triggers cis-mediated synchronized ATP binding in heptameric AAA+-ATPase domain of flagellar regulatory protein FlrC.

PubMed

Dey, Sanjay; Biswas, Maitree; Sen, Udayaditya; Dasgupta, Jhimli

2015-04-03

Bacterial enhancer-binding proteins (bEBPs) oligomerize through AAA(+) domains and use ATP hydrolysis-driven energy to isomerize the RNA polymerase-σ(54) complex during transcriptional initiation. Here, we describe the first structure of the central AAA(+) domain of the flagellar regulatory protein FlrC (FlrC(C)), a bEBP that controls flagellar synthesis in Vibrio cholerae. Our results showed that FlrC(C) forms heptamer both in nucleotide (Nt)-free and -bound states without ATP-dependent subunit remodeling. Unlike the bEBPs such as NtrC1 or PspF, a novel cis-mediated "all or none" ATP binding occurs in the heptameric FlrC(C), because constriction at the ATPase site, caused by loop L3 and helix α7, restricts the proximity of the trans-protomer required for Nt binding. A unique "closed to open" movement of Walker A, assisted by trans-acting "Glu switch" Glu-286, facilitates ATP binding and hydrolysis. Fluorescence quenching and ATPase assays on FlrC(C) and mutants revealed that although Arg-349 of sensor II, positioned by trans-acting Glu-286 and Tyr-290, acts as a key residue to bind and hydrolyze ATP, Arg-319 of α7 anchors ribose and controls the rate of ATP hydrolysis by retarding the expulsion of ADP. Heptameric state of FlrC(C) is restored in solution even with the transition state mimicking ADP·AlF3. Structural results and pulldown assays indicated that L3 renders an in-built geometry to L1 and L2 causing σ(54)-FlrC(C) interaction independent of Nt binding. Collectively, our results underscore a novel mechanism of ATP binding and σ(54) interaction that strives to understand the transcriptional mechanism of the bEBPs, which probably interact directly with the RNA polymerase-σ(54) complex without DNA looping. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

3-(6-Methyl-2-pyrid­yl)-2-phenyl-3,4-dihydro-1,3,2-benzoxaza­phosphinine 2-oxide

PubMed Central

Surendra Babu, V. H. H.; Krishnaiah, M.; Anil Kumar, M.; Suresh Reddy, C.; Kant, Rajni

2009-01-01

In the title compound, C19H17N2O2P, the six-membered 1,3,2-oxaza­phosphinine ring adopts a boat conformation with the phosphoryl O atom in an equatorial position. The dihedral angle between the 6-methyl-2-pyridyl and phenyl groups is 75.5 (1)°. These substituents are trans to each other, and are oriented at angles of 57.2 (1) and 74.8 (1)°, respectively, to the benzene ring. The crystal structure is stabilized by intra- and inter­molecular hydrogen bonds. The phosphoryl O atom participates in inter­molecular C—H⋯O inter­actions with the neighbouring mol­ecules, forming centrosymmetric R 2 2(14) dimers. PMID:21578300

Longitudinal Differences of Ionospheric Vertical Density Distribution and Equatorial Electrodynamics

NASA Technical Reports Server (NTRS)

Yizengaw, E.; Zesta, E.; Moldwin, M. B.; Damtie, B.; Mebrahtu, A.; Valledares, C.E.; Pfaff, R. F.

2012-01-01

Accurate estimation of global vertical distribution of ionospheric and plasmaspheric density as a function of local time, season, and magnetic activity is required to improve the operation of space-based navigation and communication systems. The vertical density distribution, especially at low and equatorial latitudes, is governed by the equatorial electrodynamics that produces a vertical driving force. The vertical structure of the equatorial density distribution can be observed by using tomographic reconstruction techniques on ground-based global positioning system (GPS) total electron content (TEC). Similarly, the vertical drift, which is one of the driving mechanisms that govern equatorial electrodynamics and strongly affect the structure and dynamics of the ionosphere in the low/midlatitude region, can be estimated using ground magnetometer observations. We present tomographically reconstructed density distribution and the corresponding vertical drifts at two different longitudes: the East African and west South American sectors. Chains of GPS stations in the east African and west South American longitudinal sectors, covering the equatorial anomaly region of meridian approx. 37 deg and 290 deg E, respectively, are used to reconstruct the vertical density distribution. Similarly, magnetometer sites of African Meridian B-field Education and Research (AMBER) and INTERMAGNET for the east African sector and South American Meridional B-field Array (SAMBA) and Low Latitude Ionospheric Sensor Network (LISN) are used to estimate the vertical drift velocity at two distinct longitudes. The comparison between the reconstructed and Jicamarca Incoherent Scatter Radar (ISR) measured density profiles shows excellent agreement, demonstrating the usefulness of tomographic reconstruction technique in providing the vertical density distribution at different longitudes. Similarly, the comparison between magnetometer estimated vertical drift and other independent drift observation, such as from VEFI onboard Communication/Navigation Outage Forecasting System (C/NOFS) satellite and JULIA radar, is equally promising. The observations at different longitudes suggest that the vertical drift velocities and the vertical density distribution have significant longitudinal differences; especially the equatorial anomaly peaks expand to higher latitudes more in American sector than the African sector, indicating that the vertical drift in the American sector is stronger than the African sector.

A molecular characterization of the agonist binding site of a nematode cys-loop GABA receptor

PubMed Central

Kaji, Mark D; Kwaka, Ariel; Callanan, Micah K; Nusrat, Humza; Desaulniers, Jean-Paul; Forrester, Sean G

2015-01-01

Background and Purpose Cys-loop GABA receptors represent important targets for human chemotherapeutics and insecticides and are potential targets for novel anthelmintics (nematicides). However, compared with insect and mammalian receptors, little is known regarding the pharmacological characteristics of nematode Cys-loop GABA receptors. Here we have investigated the agonist binding site of the Cys-loop GABA receptor UNC-49 (Hco-UNC-49) from the parasitic nematode Haemonchus contortus. Experimental Approach We used two-electrode voltage-clamp electrophysiology to measure channel activation by classical GABA receptor agonists on Hco-UNC-49 expressed in Xenopus laevis oocytes, along with site-directed mutagenesis and in silico homology modelling. Key Results The sulphonated molecules P4S and taurine had no effect on Hco-UNC-49. Other classical Cys-loop GABAA receptor agonists tested on the Hco-UNC-49B/C heteromeric channel had a rank order efficacy of GABA > trans-4-aminocrotonic acid > isoguvacine > imidazole-4-acetic acid (IMA) > (R)-(−)-4-amino-3-hydroxybutyric acid [R(−)-GABOB] > (S)-(+)-4-amino-3-hydroxybutyric acid [S(+)-GABOB] > guanidinoacetic acid > isonipecotic acid > 5-aminovaleric acid (DAVA) (partial agonist) > β-alanine (partial agonist). In silico ligand docking revealed some variation in binding between agonists. Mutagenesis of a key serine residue in binding loop C to threonine had minimal effects on GABA and IMA but significantly increased the maximal response to DAVA and decreased twofold the EC50 for R(−)- and S(+)-GABOB. Conclusions and Implications The pharmacological profile of Hco-UNC-49 differed from that of vertebrate Cys-loop GABA receptors and insect resistance to dieldrin receptors, suggesting differences in the agonist binding pocket. These findings could be exploited to develop new drugs that specifically target GABA receptors of parasitic nematodes. PMID:25850584

Regulated Formation of lncRNA-DNA Hybrids Enables Faster Transcriptional Induction and Environmental Adaptation.

PubMed

Cloutier, Sara C; Wang, Siwen; Ma, Wai Kit; Al Husini, Nadra; Dhoondia, Zuzer; Ansari, Athar; Pascuzzi, Pete E; Tran, Elizabeth J

2016-02-04

Long non-coding (lnc)RNAs, once thought to merely represent noise from imprecise transcription initiation, have now emerged as major regulatory entities in all eukaryotes. In contrast to the rapidly expanding identification of individual lncRNAs, mechanistic characterization has lagged behind. Here we provide evidence that the GAL lncRNAs in the budding yeast S. cerevisiae promote transcriptional induction in trans by formation of lncRNA-DNA hybrids or R-loops. The evolutionarily conserved RNA helicase Dbp2 regulates formation of these R-loops as genomic deletion or nuclear depletion results in accumulation of these structures across the GAL cluster gene promoters and coding regions. Enhanced transcriptional induction is manifested by lncRNA-dependent displacement of the Cyc8 co-repressor and subsequent gene looping, suggesting that these lncRNAs promote induction by altering chromatin architecture. Moreover, the GAL lncRNAs confer a competitive fitness advantage to yeast cells because expression of these non-coding molecules correlates with faster adaptation in response to an environmental switch. Copyright © 2016 Elsevier Inc. All rights reserved.

Rational engineering of the Neurospora VS ribozyme to allow substrate recognition via different kissing-loop interactions.

PubMed

Lacroix-Labonté, Julie; Girard, Nicolas; Dagenais, Pierre; Legault, Pascale

2016-08-19

The Neurospora VS ribozyme is a catalytic RNA that has the unique ability to specifically recognize and cleave a stem-loop substrate through formation of a highly stable kissing-loop interaction (KLI). In order to explore the engineering potential of the VS ribozyme to cleave alternate substrates, we substituted the wild-type KLI by other known KLIs using an innovative engineering method that combines rational and combinatorial approaches. A bioinformatic search of the protein data bank was initially performed to identify KLIs that are structurally similar to the one found in the VS ribozyme. Next, substrate/ribozyme (S/R) pairs that incorporate these alternative KLIs were kinetically and structurally characterized. Interestingly, several of the resulting S/R pairs allowed substrate cleavage with substantial catalytic efficiency, although with reduced activity compared to the reference S/R pair. Overall, this study describes an innovative approach for RNA engineering and establishes that the KLI of the trans VS ribozyme can be adapted to cleave other folded RNA substrates. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Disruption of Saturn's quasi-periodic equatorial oscillation by the great northern storm

NASA Astrophysics Data System (ADS)

Fletcher, Leigh N.; Guerlet, Sandrine; Orton, Glenn S.; Cosentino, Richard G.; Fouchet, Thierry; Irwin, Patrick G. J.; Li, Liming; Flasar, F. Michael; Gorius, Nicolas; Morales-Juberías, Raúl

2017-11-01

The equatorial middle atmospheres of the Earth1, Jupiter2 and Saturn3,4 all exhibit a remarkably similar phenomenon—a vertical, cyclic pattern of alternating temperatures and zonal (east-west) wind regimes that propagate slowly downwards with a well-defined multi-year period. Earth's quasi-biennial oscillation (QBO) (observed in the lower stratospheric winds with an average period of 28 months) is one of the most regular, repeatable cycles exhibited by our climate system1,5,6, and yet recent work has shown that this regularity can be disrupted by events occurring far away from the equatorial region, an example of a phenomenon known as atmospheric teleconnection7,8. Here, we reveal that Saturn's equatorial quasi-periodic oscillation (QPO) (with an 15-year period3,9) can also be dramatically perturbed. An intense springtime storm erupted at Saturn's northern mid-latitudes in December 201010-12, spawning a gigantic hot vortex in the stratosphere at 40° N that persisted for three years13. Far from the storm, the Cassini temperature measurements showed a dramatic 10 K cooling in the 0.5-5 mbar range across the entire equatorial region, disrupting the regular QPO pattern and significantly altering the middle-atmospheric wind structure, suggesting an injection of westward momentum into the equatorial wind system from waves generated by the northern storm. Hence, as on Earth, meteorological activity at mid-latitudes can have a profound effect on the regular atmospheric cycles in Saturn's tropics, demonstrating that waves can provide horizontal teleconnections between the phenomena shaping the middle atmospheres of giant planets.

The structure of antimalarial dispiro-1,2,4-trioxolanes: A density functional approach

NASA Astrophysics Data System (ADS)

Moroni, L.; Salvi, P. R.

2006-02-01

Ab initio DF/B3-LYP/cc-pVDZ calculations have been performed on three dispiro-1,2,4-trioxolane systems ( 2)-( 4). Interest in these systems comes from the fact that a water-soluble derivative of ( 3), known as OZ277, has been synthesized and identified as antimalarial drug with activity superior to those of semisynthetic artemisinins. Structural data have been obtained regarding the atomic arrangement around the peroxide bond for the three systems. Making reference to ( 3), two conformers have been calculated depending on the axial or equatorial bond of spirocyclohexane with the peroxide oxygen of 1,2,4-trioxolane. In particular, while the peroxide oxygen on the spiroadamantane side is sterically hindered for both the axial and the equatorial conformer, the peroxide oxygen on the spirocyclohexane side is more accessible to external attack when the conformer is axial than when is equatorial.

Enhanced antioxidant effect of trans-resveratrol: potential of binary systems with polyethylene glycol and cyclodextrin.

PubMed

Moyano-Mendez, Josè Ramon; Fabbrocini, Gabriella; De Stefano, Daniela; Mazzella, Caterina; Mayol, Laura; Scognamiglio, Immacolata; Carnuccio, Rosa; Ayala, Fabio; La Rotonda, Maria Immacolata; De Rosa, Giuseppe

2014-10-01

Trans-resveratrol, a polyphenol extracted from Vitis vinifera, has different beneficial effects following its administration on the skin. Here the potential use of binary systems to enhance in vitro and in vivo activity of trans-resveratrol was investigated. Thus the aqueous solubility of trans-resveratrol was investigated in the presence of growing concentrations of polyethylene glycol (PEG) or β-cyclodextrin (βCD) as solubilizing excipients. Then, the solid dispersion of trans-resveratrol with PEG or inclusion complexes trans-resveratrol/βCD were prepared and characterised by different methods. Cytotoxicity and inhibition of reactive oxygen species (ROS) following H2O2 challenge in the presence of trans-resveratrol, alone or associated to the excipients, was evaluated on human keratinocyte HaCaT cell line. Both the trans-resveratrol-containing binary systems induced significant reduction of H2O2-induced ROS production, especially in the case of βCD that was selected for the following phase of the study. Thus, the effect of a cream containing trans-resveratrol, alone or associated to βCD, on different skin parameters such as corneometry, colorimetry and elastometry, was evaluated on human volunteers. All patients showed a visible improvement of clinical conditions with a remarkable decrease of aging signs, but this effect was higher of the hemi face treated with the βCD-containing formulation versus formulation containing trans-resveratrol alone.

A Flight-Calibrated Methodology for Determination of Cassini Thruster On-Times for Reaction Wheel Biases

NASA Technical Reports Server (NTRS)

Sarani, Sam

2010-01-01

The Cassini spacecraft, the largest and most complex interplanetary spacecraft ever built, continues to undertake unique scientific observations of planet Saturn, Titan, Enceladus, and other moons of the ring world. In order to maintain a stable attitude during the course of its mission, this three-axis stabilized spacecraft uses two different control systems: the Reaction Control System (or RCS) and the Reaction Wheel Assembly (RWA) control system. In the course of its mission, Cassini performs numerous reaction wheel momentum biases (or unloads) using its reaction control thrusters. The use of the RCS thrusters often imparts undesired velocity changes (delta Vs) on the spacecraft and it is crucial for Cassini navigation and attitude control teams to be able to, quickly but accurately, predict the hydrazine usage and delta V vector in Earth Mean Equatorial (J2000) inertial coordinates for reaction wheel bias events, without actually having to spend time and resources simulating the event in a dynamic or hardware-in-the-loop simulation environments. The flight-calibrated methodology described in this paper, and the ground software developed thereof, are designed to provide the RCS thruster on-times, with acceptable accuracy and without any form of dynamic simulation, for reaction wheel biases, along with the hydrazine usage and the delta V in EME-2000 inertial frame.

Toward a reduced-wire readout system for ultrasound imaging.

PubMed

Lim, Jaemyung; Arkan, Evren F; Degertekin, F Levent; Ghovanloo, Maysam

2014-01-01

We present a system-on-a-chip (SoC) for use in high-frequency capacitive micromachined ultrasonic transducer (CMUT) imaging systems. This SoC consists of trans-impedance amplifiers (TIA), delay locked loop (DLL) based clock multiplier, quadrature sampler, and pulse width modulator (PWM). The SoC down converts RF echo signal to baseband by quadrature sampling which facilitates modulation. To send data through a 1.6 m wire in the catheter which has limited bandwidth and is vulnerable to noise, the SoC creates a pseudo-digital PWM signal which can be used for back telemetry or wireless readout of the RF data. In this implementation, using a 0.35-μm std. CMOS process, the TIA and single-to-differential (STD) converter had 45 MHz bandwidth, the quadrature sampler had 10.1 dB conversion gain, and the PWM had 5-bit ENoB. Preliminary results verified front-end functionality, and the power consumption of a TIA, STD, quadrature sampler, PWM, and clock multiplier was 26 mW from a 3 V supply.

Toward a Reduced-Wire Readout System for Ultrasound Imaging

PubMed Central

Lim, Jaemyung; Arkan, Evren F.; Degertekin, F. Levent; Ghovanloo, Maysam

2015-01-01

We present a system-on-a-chip (SoC) for use in high-frequency capacitive micromachined ultrasonic transducer (CMUT) imaging systems. This SoC consists of trans-impedance amplifiers (TIA), delay locked loop (DLL) based clock multiplier, quadrature sampler, and pulse width modulator (PWM). The SoC down converts RF echo signal to baseband by quadrature sampling which facilitates modulation. To send data through a 1.6 m wire in the catheter which has limited bandwidth and is vulnerable to noise, the SoC creates a pseudo-digital PWM signal which can be used for back telemetry or wireless readout of the RF data. In this implementation, using a 0.35-μm std. CMOS process, the TIA and single-to-differential (STD) converter had 45 MHz bandwidth, the quadrature sampler had 10.1 dB conversion gain, and the PWM had 5-bit ENoB. Preliminary results verified front-end functionality, and the power consumption of a TIA, STD, quadrature sampler, PWM, and clock multiplier was 26 mW from a 3 V supply. PMID:25571135

Climate variability and predictability associated with the Indo-Pacific Oceanic Channel Dynamics in the CCSM4 Coupled System Model

NASA Astrophysics Data System (ADS)

Yuan, Dongliang; Xu, Peng; Xu, Tengfei

2017-01-01

An experiment using the Community Climate System Model (CCSM4), a participant of the Coupled Model Intercomparison Project phase-5 (CMIP5), is analyzed to assess the skills of this model in simulating and predicting the climate variabilities associated with the oceanic channel dynamics across the Indo-Pacific Oceans. The results of these analyses suggest that the model is able to reproduce the observed lag correlation between the oceanic anomalies in the southeastern tropical Indian Ocean and those in the cold tongue in the eastern equatorial Pacific Ocean at a time lag of 1 year. This success may be largely attributed to the successful simulation of the interannual variations of the Indonesian Throughflow, which carries the anomalies of the Indian Ocean Dipole (IOD) into the western equatorial Pacific Ocean to produce subsurface temperature anomalies, which in turn propagate to the eastern equatorial Pacific to generate ENSO. This connection is termed the "oceanic channel dynamics" and is shown to be consistent with the observational analyses. However, the model simulates a weaker connection between the IOD and the interannual variability of the Indonesian Throughflow transport than found in the observations. In addition, the model overestimates the westerly wind anomalies in the western-central equatorial Pacific in the year following the IOD, which forces unrealistic upwelling Rossby waves in the western equatorial Pacific and downwelling Kelvin waves in the east. This assessment suggests that the CCSM4 coupled climate system has underestimated the oceanic channel dynamics and overestimated the atmospheric bridge processes.

Regulation of TCF ETS-domain transcription factors by helix-loop-helix motifs.

PubMed

Stinson, Julie; Inoue, Toshiaki; Yates, Paula; Clancy, Anne; Norton, John D; Sharrocks, Andrew D

2003-08-15

DNA binding by the ternary complex factor (TCF) subfamily of ETS-domain transcription factors is tightly regulated by intramolecular and intermolecular interactions. The helix-loop-helix (HLH)-containing Id proteins are trans-acting negative regulators of DNA binding by the TCFs. In the TCF, SAP-2/Net/ERP, intramolecular inhibition of DNA binding is promoted by the cis-acting NID region that also contains an HLH-like motif. The NID also acts as a transcriptional repression domain. Here, we have studied the role of HLH motifs in regulating DNA binding and transcription by the TCF protein SAP-1 and how Cdk-mediated phosphorylation affects the inhibitory activity of the Id proteins towards the TCFs. We demonstrate that the NID region of SAP-1 is an autoinhibitory motif that acts to inhibit DNA binding and also functions as a transcription repression domain. This region can be functionally replaced by fusion of Id proteins to SAP-1, whereby the Id moiety then acts to repress DNA binding in cis. Phosphorylation of the Ids by cyclin-Cdk complexes results in reduction in protein-protein interactions between the Ids and TCFs and relief of their DNA-binding inhibitory activity. In revealing distinct mechanisms through which HLH motifs modulate the activity of TCFs, our results therefore provide further insight into the role of HLH motifs in regulating TCF function and how the inhibitory properties of the trans-acting Id HLH proteins are themselves regulated by phosphorylation.

Critical domain interactions for type A RNase P RNA catalysis with and without the specificity domain

PubMed Central

Mao, Guanzhong; Srivastava, Abhishek S.; Wu, Shiying; Kosek, David; Lindell, Magnus

2018-01-01

The natural trans-acting ribozyme RNase P RNA (RPR) is composed of two domains in which the catalytic (C-) domain mediates cleavage of various substrates. The C-domain alone, after removal of the second specificity (S-) domain, catalyzes this reaction as well, albeit with reduced efficiency. Here we provide experimental evidence indicating that efficient cleavage mediated by the Escherichia coli C-domain (Eco CP RPR) with and without the C5 protein likely depends on an interaction referred to as the "P6-mimic". Moreover, the P18 helix connects the C- and S-domains between its loop and the P8 helix in the S-domain (the P8/ P18-interaction). In contrast to the "P6-mimic", the presence of P18 does not contribute to the catalytic performance by the C-domain lacking the S-domain in cleavage of an all ribo model hairpin loop substrate while deletion or disruption of the P8/ P18-interaction in full-size RPR lowers the catalytic efficiency in cleavage of the same model hairpin loop substrate in keeping with previously reported data using precursor tRNAs. Consistent with that P18 is not required for cleavage mediated by the C-domain we show that the archaeal Pyrococcus furiosus RPR C-domain, which lacks the P18 helix, is catalytically active in trans without the S-domain and any protein. Our data also suggest that the S-domain has a larger impact on catalysis for E. coli RPR compared to P. furiosus RPR. Finally, we provide data indicating that the absence of the S-domain and P18, or the P8/ P18-interaction in full-length RPR influences the charge distribution near the cleavage site in the RPR-substrate complex to a small but reproducible extent. PMID:29509761

Equatorial scintillation and systems support

NASA Astrophysics Data System (ADS)

Groves, K. M.; Basu, S.; Weber, E. J.; Smitham, M.; Kuenzler, H.; Valladares, C. E.; Sheehan, R.; MacKenzie, E.; Secan, J. A.; Ning, P.; McNeill, W. J.; Moonan, D. W.; Kendra, M. J.

1997-09-01

The need to nowcast and forecast scintillation for the support of operational systems has been recently identified by the interagency National Space Weather Program. This issue is addressed in the present paper in the context of nighttime irregularities in the equatorial ionosphere that cause intense amplitude and phase scintillations of satellite signals in the VHF/UHF range of frequencies and impact satellite communication, Global Positioning System navigation, and radar systems. Multistation and multifrequency satellite scintillation observations have been used to show that even though equatorial scintillations vary in accordance with the solar cycle, the extreme day-to-day variability of unknown origin modulates the scintillation occurrence during all phases of the solar cycle. It is shown that although equatorial scintillation events often show correlation with magnetic activity, the major component of scintillation is observed during magnetically quiet periods. In view of the day-to-day variability of the occurrence and intensity of scintillating regions, their latitude extent, and their zonal motion, a regional specification and short-term forecast system based on real-time measurements has been developed. This system, named the Scintillation Network Decision Aid, consists of two latitudinally dispersed stations, each of which uses spaced antenna scintillation receiving systems to monitor 250-MHz transmissions from two longitudinally separated geostationary satellites. The scintillation index and zonal irregularity drift are processed on-line and are retrieved by a remote operator on the Internet. At the operator terminal the data are combined with an empirical plasma bubble model to generate three-dimensional maps of irregularity structures and two-dimensional outage maps for the region.

pH-regulated metal-ligand switching in the HM loop of ATP7A: a new paradigm for metal transfer chemistry.

PubMed

Kline, Chelsey D; Gambill, Benjamin F; Mayfield, Mary; Lutsenko, Svetlana; Blackburn, Ninian J

2016-08-01

Cuproproteins such as PHM and DBM mature in late endosomal vesicles of the mammalian secretory pathway where changes in vesicle pH are employed for sorting and post-translational processing. Colocation with the P1B-type ATPase ATP7A suggests that the latter is the source of copper and supports a mechanism where selectivity in metal transfer is achieved by spatial colocation of partner proteins in their specific organelles or vesicles. In previous work we have suggested that a lumenal loop sequence located between trans-membrane helices TM1 and TM2 of the ATPase, and containing five histidines and four methionines, acts as an organelle-specific chaperone for metallation of the cuproproteins. The hypothesis posits that the pH of the vesicle regulates copper ligation and loop conformation via a mechanism which involves His to Met ligand switching induced by histidine protonation. Here we report the effect of pH on the HM loop copper coordination using X-ray absorption spectroscopy (XAS), and show via selenium substitution of the Met residues that the HM loop undergoes similar conformational switching to that found earlier for its partner PHM. We hypothesize that in the absence of specific chaperones, HM motifs provide a template for building a flexible, pH-sensitive transfer site whose structure and function can be regulated to accommodate the different active site structural elements and pH environments of its partner proteins.

The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure.

PubMed

Leontis, N B; Westhof, E

1998-09-01

A significant fraction of the bases in a folded, structured RNA molecule participate in noncanonical base pairing interactions, often in the context of internal loops or multi-helix junction loops. The appearance of each new high-resolution RNA structure provides welcome data to guide efforts to understand and predict RNA 3D structure, especially when the RNA in question is a functionally conserved molecule. The recent publication of the crystal structure of the "Loop E" region of bacterial 5S ribosomal RNA is such an event [Correll CC, Freeborn B, Moore PB, Steitz TA, 1997, Cell 91:705-712]. In addition to providing more examples of already established noncanonical base pairs, such as purine-purine sheared pairings, trans-Hoogsteen UA, and GU wobble pairs, the structure provides the first high-resolution views of two new purine-purine pairings and a new GU pairing. The goal of the present analysis is to expand the capabilities of both chemical probing and phylogenetic analysis to predict with greater accuracy the structures of RNA molecules. First, in light of existing chemical probing data, we investigate what lessons could be learned regarding the interpretation of this widely used method of RNA structure probing. Then we analyze the 3D structure with reference to molecular phylogeny data (assuming conservation of function) to discover what alternative base pairings are geometrically compatible with the structure. The comparisons between previous modeling efforts and crystal structures show that the intricate involvements of ions and water molecules in the maintenance of non-Watson-Crick pairs render the process of correctly identifying the interacting sites in such pairs treacherous, except in cases of trans-Hoogsteen A/U or sheared A/G pairs for the adenine N1 site. The phylogenetic analysis identifies A/A, A/C, A/U and C/A, C/C, and C/U pairings isosteric with sheared A/G, as well as A/A and A/C pairings isosteric with both G/U and G/G bifurcated pairings. Thus, each non-Watson-Crick pair could be characterized by a phylogenetic signature of variations between isosteric-like pairings. In addition to the conservative changes, which form a dictionary of pairings isosterically compatible with those observed in the crystal structure, concerted changes involving several base pairs also occur. The latter covariations may indicate transitions between related but distinctive motifs within the loop E of 5S ribosomal RNA.

Logic design and implementation of FPGA for a high frame rate ultrasound imaging system

NASA Astrophysics Data System (ADS)

Liu, Anjun; Wang, Jing; Lu, Jian-Yu

2002-05-01

Recently, a method has been developed for high frame rate medical imaging [Jian-yu Lu, ``2D and 3D high frame rate imaging with limited diffraction beams,'' IEEE Trans. Ultrason. Ferroelectr. Freq. Control 44(4), 839-856 (1997)]. To realize this method, a complicated system [multiple-channel simultaneous data acquisition, large memory in each channel for storing up to 16 seconds of data at 40 MHz and 12-bit resolution, time-variable-gain (TGC) control, Doppler imaging, harmonic imaging, as well as coded transmissions] is designed. Due to the complexity of the system, field programmable gate array (FPGA) (Xilinx Spartn II) is used. In this presentation, the design and implementation of the FPGA for the system will be reported. This includes the synchronous dynamic random access memory (SDRAM) controller and other system controllers, time sharing for auto-refresh of SDRAMs to reduce peak power, transmission and imaging modality selections, ECG data acquisition and synchronization, 160 MHz delay locked loop (DLL) for accurate timing, and data transfer via either a parallel port or a PCI bus for post image processing. [Work supported in part by Grant 5RO1 HL60301 from NIH.

Equatorial Guinea.

PubMed

1989-03-01

Equatorial Guinea is situated on the Gulf of Guinea along the west African coast between Cameroon and Gabon. The people are predominantly of Bantu origin. The country's ties with Spain are significant; in 1959, it became the Spanish Equatorial region ruled by Spain's commissioner general. Recent political developments in Equatorial Guinea include the formation of the Democratic Party for Equatorial Guinea in July of 1987 and the formation of a 60-member unicameral Chamber of Representatives of the People in 1983. Concerning the population, 83% of the people are Catholic and the official language is Spanish. Poverty and serious health, education and sanitary problems exist. There is no adequate hospital and few trained physicians, no dentists, and no opticians. Malaria is endemic and immunization for yellow fever is required for entrance into the country. The water is not potable and many visitors to the country bring bottled water. The tropical climate of Equatorial Guinea provides the climate for the country's largest exports and source of economy; cacao, wood and coffee. Although the country, as a whole, has progressed towards developing a participatory political system, there are still problems of governmental corruption in the face of grave health and welfare conditions. In recent years, the country has received assistance from the World Bank and the United States to aid in its development.

Crystal structure of bis­[trans-di­chlorido­bis(propane-1,3-di­amine-κ2 N,N′)chromium(III)] dichromate from synchrotron data

PubMed Central

Moon, Dohyun; Ryoo, Keon Sang; Choi, Jong-Ha

2016-01-01

The structure of the title compound, [CrCl2(tn)2]2[Cr2O7] (tn = propane-1,3-di­amine; C3H10N2), has been determined from synchrotron data. The asymmetric unit contains one CrIII complex cation and half a [Cr2O7]2− anion. In the complex cation, the CrIII ion is coordinated by the four N atoms of two propane-1,3-di­amine (tn) ligands in the equatorial plane and by two Cl atoms in a trans configuration, displaying a distorted octa­hedral coordination sphere. The two six-membered rings in the complex cation have an anti chair–chair conformation with respect to each other. The mean Cr—N(tn) and Cr—Cl bond lengths are 2.09 (1) and 2.320 (2) Å, respectively. The slightly bent dichromate anion is disordered over two sets of sites (occupancy ratio = 0.7:0.3) and has a staggered conformation. The crystal structure is stabilized by inter­molecular hydrogen bonds involving the NH2 groups of the tn ligands as donors and the O atoms of the [Cr2O7]2− anion and chlorido ligands as acceptors. PMID:27920920

Crystal structure of trans-bis­(ethane-1,2-diamine-κ2 N,N′)bis­(thio­cyanato-κN)chromium(III) perchlorate from synchrotron data

PubMed Central

Moon, Dohyun; Choi, Jong-Ha

2015-01-01

The structure of the title compound, [Cr(NCS)2(C2H8N2)2]ClO4, has been determined from synchroton data. The asymmetric unit consists of one half of a centrosymmetric CrIII complex cation and half of a perchlorate anion with the Cl atom on a twofold rotation axis. The CrIII ion is coordinated by the four N atoms of two ethane-1,2-di­amine (en) ligands in the equatorial plane and two N-bound thio­cyanate (NCS−) anions in a trans-axial arrangement, displaying a slightly distorted octa­hedral geometry with crystallographic inversion symmetry. The Cr—N(en) bond lengths are in the range 2.053 (16)–2.09 (2) Å, while the Cr—N(thio­cyanate) bond length is 1.983 (2) Å. The five-membered en rings are disordered over two sites, with occupancy ratios of 0.522 (16):0.478 (16). Each ClO4 − anion is disordered over two sites with equal occupancy. The crystal structure is stabilized by inter­molecular hydrogen bonds involving the en NH2 groups as donors and perchlorate O and thio­cyanate S atoms as acceptors. PMID:26090142

Crystal structure of bis­[trans-(ethane-1,2-di­amine-κ2 N,N′)bis­(thio­cyanato-κN)chromium(III)] tetra­chlorido­zincate from synchrotron data

PubMed Central

Moon, Dohyun; Choi, Jong-Ha

2015-01-01

The structure of the title compound, [Cr(NCS)2(C2H8N2)2]2[ZnCl4], has been determined from synchrotron data. In the asymmetric unit, there are four independent halves of the CrIII complex cations, each of which lies on an inversion centre, and one tetra­chlorido­zincate anion in a general position. The CrIII atoms are coordinated by the four N atoms of two ethane-1,2-di­amine (en) ligands in the equatorial plane and two N-bound NCS− anions in a trans arrangement, displaying a slightly distorted octa­hedral geometry with crystallographic inversion symmetry. The Cr—N(en) and Cr—N(NCS) bond lengths range from 2.0653 (10) to 2.0837 (10) Å and from 1.9811 (10) to 1.9890 (10) Å, respectively. The five-membered metalla-rings are in stable gauche conformations. The [ZnCl4]2− anion has a distorted tetra­hedral geometry. The crystal structure is stabilized by inter­molecular hydrogen bonds involving the en NH2 or CH2 groups as donors and chloride ligands of the anion and S atoms of NCS− ligands as acceptors. PMID:25705463

EEJ and EIA variations during modeling substorms with different onset moments

NASA Astrophysics Data System (ADS)

Klimenko, V. V.; Klimenko, M. V.

2015-11-01

This paper presents the simulations of four modeling substorms with different moment of substorm onset at 00:00 UT, 06:00 UT, 12:00 UT, and 18:00 UT for spring equinoctial conditions in solar activity minimum. Such investigation provides opportunity to examine the longitudinal dependence of ionospheric response to geomagnetic substorms. Model runs were performed using modified Global Self-consistent Model of the Thermosphere, Ionosphere and Protonosphere (GSM TIP). We analyzed GSM TIP simulated global distributions of foF2, low latitude electric field and ionospheric currents at geomagnetic equator and their disturbances at different UT moments substorms. We considered in more detail the variations in equatorial ionization anomaly, equatorial electrojet and counter equatorial electrojet during substorms. It is shown that: (1) the effects in EIA, EEJ and CEJ strongly depend on the substorm onset moment; (2) disturbances in equatorial zonal current density during substorm has significant longitudinal dependence; (3) the observed controversy on the equatorial ionospheric electric field signature of substorms can depend on the substorm onset moments, i.e., on the longitudinal variability in parameters of the thermosphere-ionosphere system.

Three isomers detected for the whisky lactone: 5-butyl-4-methyl tetrahydrofuran-2-one by Fourier transform microwave spectroscopy and quantum chemical calculations

NASA Astrophysics Data System (ADS)

Kawashima, Yoshiyuki; Katsuragi, Ryusuke; Hirota, Eizi

2017-05-01

The ground-state rotational spectra of the whisky lactone (WL) : 5-butyl-4-methyl tetrahydrofuran-2-one were observed and analyzed by molecular beam Fourier transform microwave spectroscopy combined with quantum chemical calculations. We have detected three stereo-isomers: the trans-TTT form with a methyl CH3 group attached to C(4) in an equatorial position (eq) and a butyl C4H9 group to C(5) in an eq position, for which 110 b-type and 113 a-type transitions were assigned, the cis-TTT form with a CH3 to C(4) in an axial position (ax) and a C4H9 to C(5) in eq, for which 96 a-type, 101 b-type, and 45 c-type transitions were observed, and the cis-GTT form with a CH3 to C(4) in ax and a C4H9 to C(5) in eq, for which 158 a-type, 52 b-type, and 17 c-type transitions were observed, where TTT and GTT denote the conformations about the C(6)sbnd C(5), C(7)sbnd C(6), and C(8)sbnd C(7) bonds, with T and G designating trans and gauche, respectively. The rotational constants thus derived agree with the predictions made by quantum chemical calculations, MP2/6-311++G(d, p) within 1.2%. The trans-TTT form was calculated to be the most stable. The splittings due to internal rotation of the terminal methyl in the butyl group were observed for all the three stereo-isomers and were analyzed by the XIAM program to determine the threefold potential barrier V3 to be 966.4 (25), 978.8 (11), and 1098.7 (48) in cm-1 for the trans-TTT (eq, eq), the cis-TTT (ax, eq), and the cis-GTT (ax, eq) forms, respectively, to be compared with quantum chemically calculated values: 1055, 1055, and 1053 in cm-1.

Molecular dynamics correctly models the unusual major conformation of the GAGU RNA internal loop and with NMR reveals an unusual minor conformation.

PubMed

Spasic, Aleksandar; Kennedy, Scott D; Needham, Laura; Manoharan, Muthiah; Kierzek, Ryszard; Turner, Douglas H; Mathews, David H

2018-05-01

The RNA "GAGU" duplex, (5'GAC GAGU GUCA) 2 , contains the internal loop (5'-GAGU-3') 2 , which has two conformations in solution as determined by NMR spectroscopy. The major conformation has a loop structure consisting of trans -Watson-Crick/Hoogsteen GG pairs, A residues stacked on each other, U residues bulged outside the helix, and all sugars with a C2'- endo conformation. This differs markedly from the internal loops, (5'-G AG C-3') 2 , (5'-A AG U-3') 2 , and (5'-UAGG-3') 2 , which all have cis -Watson-Crick/Watson-Crick AG "imino" pairs flanked by cis -Watson-Crick/Watson-Crick canonical pairs resulting in maximal hydrogen bonding. Here, molecular dynamics was used to test whether the Amber force field (ff99 + bsc0 + OL3) approximates molecular interactions well enough to keep stable the unexpected conformation of the GAGU major duplex structure and the NMR structures of the duplexes containing (5'-G AG C-3') 2 , (5'-A AG U-3') 2 , and (5'-U AG G-3') 2 internal loops. One-microsecond simulations were repeated four times for each of the duplexes starting in their NMR conformations. With the exception of (5'-UAGG-3') 2 , equivalent simulations were also run starting with alternative conformations. Results indicate that the Amber force field keeps the NMR conformations of the duplexes stable for at least 1 µsec. They also demonstrate an unexpected minor conformation for the (5'-GAGU-3') 2 loop that is consistent with newly measured NMR spectra of duplexes with natural and modified nucleotides. Thus, unrestrained simulations led to the determination of the previously unknown minor conformation. The stability of the native (5'-GAGU-3') 2 internal loop as compared to other loops can be explained by changes in hydrogen bonding and stacking as the flanking bases are changed. © 2018 Spasic et al.; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

Space Weather Now-Casting for Area-Denied Locations: Testing All-Sky-Imaging Applications at Geomagnetic Conjugate Points.

NASA Astrophysics Data System (ADS)

Baumgardner, J. L.; Mendillo, M.; Martinis, C. R.; Hickey, D. A.; Wroten, J.

2017-12-01

We explore the concept of using an all-sky-imager (ASI) in one hemisphere to provide now-casting of ionospheric perturbations in the opposite hemisphere. The specific example deals with low-latitude plasma instabilities known as equatorial spread-F (ESF) that depend on geomagnetic field controlled electrodynamics. ASI observations of 630.0 nm airglow from 300 km exhibit regions of low emission ("airglow depletions") that correlate highly with ESF patterns of radiowave disruptions, e.g., from GPS satellites. For both oceanographic and geopolitical reasons, there are vast regions of the globe that cannot be used for ground-based now-casting of local ESF effects. For such area-denied locations, it is possible for observations of airglow depletions from the opposite hemisphere to be used to specify both local and conjugate location environmental impacts. We use fifteen months of ASI observations from the El Leoncito Observatory (Argentina) to predict simultaneous conditions at its trans-equatorial geomagnetic conjugate point in Villa de Leyva (Colombia)—validated by independent ASI observations at that location. We find the success rate of conjugate point now-casting to be greater than 95% for large-scale ESF occurrence patterns. For a different pair of stations at higher magnetic latitudes, three years of observations from the Arecibo Observatory (Puerto Rico) were used to make ESF now-casting at its conjugate point in Mercedes (Argentina) with a 85% success rate.

The Addition of Enhanced Capabilities to NATO GMTIF STANAG 4607 to Support RADARSAT-2 GMTI Data

DTIC Science & Technology

2007-12-01

However, the cost is a loss in the accuracy of the position specification and its dependence on the particular ellipsoid and/or geoid models used in...platform provides these parameters. Table B-3. Reference Coordinate Systems COORDINATE SYSTEM VALUE Unidentified 0 GEI: Geocentric Equatorial...Inertial, also known as True Equator and True Equinox of Date, True of Date (TOD), ECI, or GCI 1 J2000: Geocentric Equatorial Inertial for epoch J2000.0

On the structure of climate variability near the tropopause and its relationship to equatorial planetary waves

NASA Astrophysics Data System (ADS)

Grise, Kevin M.

The tropopause is an important interface in the climate system, separating the unique dynamical, chemical, and radiative regimes of the troposphere and stratosphere. Previous studies have demonstrated that the long-term mean structure and variability of the tropopause results from a complex interaction of stratospheric and tropospheric processes. This project provides new insight into the processes involved in the global tropopause region through two perspectives: (1) a high vertical resolution climatology of static stability and (2) an observational analysis of equatorial planetary waves. High vertical resolution global positioning system radio occultation profiles are used to document fine-scale features of the global static stability field near the tropopause. Consistent with previous studies, a region of enhanced static stability, known as the tropopause inversion layer (TIL), exists in a narrow layer above the extratropical tropopause and is strongest over polar regions during summer. However, in the tropics, the TIL possesses a unique horizontally and vertically varying structure with maxima located at ˜17 and ˜19 km. The upper feature peaks during boreal winter and has its largest magnitude between 10º and 15º latitude in both hemispheres; the lower feature exhibits a weaker seasonal cycle and is centered at the Equator. The spatial structure of both features resembles the equatorial planetary wave response to the climatological distribution of deep convection. Equatorial planetary waves not only dominate the climatological-mean general circulation near the tropical tropopause but also play an important role in its intraseasonal and interannual variability. The structure of the equatorial planetary waves emerges as the leading pattern of variability of the zonally asymmetric tropical atmospheric circulation. Regressions on an index of the equatorial planetary waves reveal that they are associated with a distinct pattern of equatorially symmetric climate variability characterized by variations in: (1) the distribution of convection in the deep tropics; (2) the eddy momentum flux convergence and the zonal-mean zonal wind in the tropical upper troposphere; (3) the mean meridional circulation of the tropical and subtropical troposphere; (4) temperatures in the tropical upper troposphere, the tropical lower stratosphere, and the subtropical troposphere of both hemispheres; and (5) the amplitude of the upper tropospheric anticyclones that straddle the Equator over the western tropical Pacific Ocean. The pulsation of the equatorial planetary waves in time provides a framework for interpreting a broad range of climate phenomena. Variability in the equatorial planetary waves is associated with variability in the tropical TIL and is linked to both the El Nino-Southern Oscillation and the Madden-Julian Oscillation (MJO). Evidence is presented that suggests that the MJO can be viewed as the linear superposition of: (1) the pulsation of the equatorial planetary waves at a fixed location and (2) a propagating component. Variability in the equatorial planetary waves may also contribute to variability in troposphere/stratosphere exchange and the width of the tropical belt.

Pollen morphology of Rhizophora L. in Peninsular Malaysia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mohd-Arrabe', A. B.; Noraini, Talip Noraini

Rhizophora L. are common mangrove genus in Peninsular Malaysia, it contains 3 species and 1 hybrid (R. apiculata Blume, R. mucronata Lam., R. stylosa Griff., R. x lamarckii Montrouz). This genus has some unique adaptation towards extreme environment. Rhizophora has looping aerial stilt-root and uniformly viviparous. The aim of this study is to investigate the variation in the pollen morphology of Rhizophora that can be related to their habitat. Methods include in this study is pollen observation under light and acetolysis method under scanning electron microscope. Pollen type of Rhizophora species studied except hybrid species is classified tricolporate, shape spheroidalmore » based on ratio of length polar axis/ length of equatorial axis (1.03 - 1.09). The exine ornamentation is perforate-reticulate for R. apiculata and R. mucronata, while R. stylosa is perforate. For the only hybrid in Peninsular Malaysia, R. x lamarckii (R. apiculata x R. stylosa) differs from others, tricolpate with the absence of porate, shape is subprolate and exine ornamentation is reticulate and striate in equatorial region. Pollenkitt is present due to the salty and extreme environment. This may enhance the volume of pollenkitt present surrounding the pollen grains in Rhizophora for protection and adaptation purposes. Based on these findings, it is evident that pollen morphology is somehow related to its natural habitat.« less

Pollen morphology of Rhizophora L. in Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Mohd-Arrabe', A. B.; Noraini, Talip Noraini

2013-11-01

Rhizophora L. are common mangrove genus in Peninsular Malaysia, it contains 3 species and 1 hybrid (R. apiculata Blume, R. mucronata Lam., R. stylosa Griff., R. x lamarckii Montrouz). This genus has some unique adaptation towards extreme environment. Rhizophora has looping aerial stilt-root and uniformly viviparous. The aim of this study is to investigate the variation in the pollen morphology of Rhizophora that can be related to their habitat. Methods include in this study is pollen observation under light and acetolysis method under scanning electron microscope. Pollen type of Rhizophora species studied except hybrid species is classified tricolporate, shape spheroidal based on ratio of length polar axis/ length of equatorial axis (1.03 - 1.09). The exine ornamentation is perforate-reticulate for R. apiculata and R. mucronata, while R. stylosa is perforate. For the only hybrid in Peninsular Malaysia, R. x lamarckii (R. apiculata x R. stylosa) differs from others, tricolpate with the absence of porate, shape is subprolate and exine ornamentation is reticulate and striate in equatorial region. Pollenkitt is present due to the salty and extreme environment. This may enhance the volume of pollenkitt present surrounding the pollen grains in Rhizophora for protection and adaptation purposes. Based on these findings, it is evident that pollen morphology is somehow related to its natural habitat.

Remote Sensing of the Ionosphere and Plasmasphere from Space Using Radiowaves

NASA Technical Reports Server (NTRS)

Mannucci, Anthony J.

2008-01-01

Topics include the scientific context, trans-ionospheric and sounding, small-scale structure, plasmasphere, fast and slow tomography, and pseudo-imaging. Individual slides focus on where geospace science stands today, variability in inner magnetosphere electric fields, Appleton-Hartree formula, phase and range ionospheric observables, examples of leveling, large ionization changes during storms, new mid-latitude phenomena, ionospheric sounding, COSMIC CERTO/Tri-band beacon, LEO-ground radio tomography, irregularity measurements, COSMIC, critical sensor data from COSMIC GPS limb sounding, occultation geometry, comparison of calibrated slant TEC measurements for 26 June 2006, historic examples of Abel electron density profiles, comparison of UCAR and JPL Able profiles of 26 June 2006, validating UCAR and JPL Abel profiles using Arecibo ISR measurements for 26 June 2006, E-region from GPS/MET 1995, Abel versus gradient assisted retrieval, 3000 profiles/day, plasmasphere, JASON TEC above satellite, GPS equatorial plasmasphere measurements, April 2002 geomagnetic storm, and space-based GPS tomography.

A Review of Ionospheric Scintillation Models.

PubMed

Priyadarshi, S

This is a general review of the existing climatological models of ionospheric radio scintillation for high and equatorial latitudes. Trans-ionospheric communication of radio waves from transmitter to user is affected by the ionosphere which is highly variable and dynamic in both time and space. Scintillation is the term given to irregular amplitude and phase fluctuations of the received signals and related to the electron density irregularities in the ionosphere. Key sources of ionospheric irregularities are plasma instabilities; every irregularities model is based on the theory of radio wave propagation in random media. It is important to understand scintillation phenomena and the approach of different theories. Therefore, we have briefly discussed the theories that are used to interpret ionospheric scintillation data. The global morphology of ionospheric scintillation is also discussed briefly. The most important (in our opinion) analytical and physical models of scintillation are reviewed here.

A detailed study of the structure of the nested planetary nebula, Hb 12, the Matryoshka nebula

DOE Office of Scientific and Technical Information (OSTI.GOV)

Clark, D. M.; López, J. A.; Edwards, M. L.

We present near-IR, integral field spectroscopic observations of the planetary nebula (PN) Hb 12 using Near-infrared Integral Field Spectrograph (NIFS) on Gemini-North. Combining NIFS with the adaptive optics system Altair, we provide a detailed study of the core and inner structure of this PN. We focus the analysis in the prominent emission lines [Fe II] (1.6436 μm), He I (2.0585 μm), H{sub 2} (2.1214 μm), and Br{sub γ} (2.16553 μm). We find that the [Fe II] emission traces a tilted system of bipolar lobes, with the northern lobe being redshifted and the southern lobe blueshifted. The [Fe II] emission ismore » very faint at the core and only present close to the systemic velocity. There is no H{sub 2} emission in the core, whereas the core is prominent in the He I and Br{sub γ} recombination lines. The H{sub 2} emission is concentrated in equatorial arcs of emission surrounding the core and expanding at ∼30 km s{sup –1}. These arcs are compared with Hubble Space Telescope images and shown to represent nested loops belonging to the inner sections of a much larger bipolar structure that replicates the inner one. The He I and Br{sub γ} emission from the core clearly show a cylindrical central cavity that seems to represent the inner walls of an equatorial density enhancement or torus. The torus is 0.''2 wide (≡200 AU radius at a distance of 2000 pc) and expanding at ≤30 km s{sup –1}. The eastern wall of the inner torus is consistently more intense than the western wall, which could indicate the presence of an off-center star, such as is observed in the similar hourglass PN, MyCn 18. A bipolar outflow is also detected in Br{sub γ} emerging within 0.''1 from the core at ∼ ± 40 km s{sup –1}.« less

Hiatus-like decades in the absence of equatorial Pacific cooling and accelerated global ocean heat uptake

NASA Astrophysics Data System (ADS)

von Känel, Lukas; Frölicher, Thomas L.; Gruber, Nicolas

2017-08-01

A surface cooling pattern in the equatorial Pacific associated with a negative phase of the Interdecadal Pacific Oscillation is the leading hypothesis to explain the smaller rate of global warming during 1998-2012, with these cooler than normal conditions thought to have accelerated the oceanic heat uptake. Here using a 30-member ensemble simulation of a global Earth system model, we show that in 10% of all simulated decades with a global cooling trend, the eastern equatorial Pacific actually warms. This implies that there is a 1 in 10 chance that decadal hiatus periods may occur without the equatorial Pacific being the dominant pacemaker. In addition, the global ocean heat uptake tends to slow down during hiatus decades implying a fundamentally different global climate feedback factor on decadal time scales than on centennial time scales and calling for caution inferring climate sensitivity from decadal-scale variability.

Longitudinal Variation and Waves in Jupiter's South Equatorial Wind Jet

NASA Technical Reports Server (NTRS)

Simon-Miller, A. A.; Rogers, John H.; Gierasch, Peter J.; Choi, David; Allison, Michael; Adamoli, Gianluigi; Mettig, Hans-Joerg

2012-01-01

We have conducted a detailed study of the cloud features in the strong southern equatorial wind jet near 7.5 S planetographic latitude. To understand the apparent variations in average zonal wind jet velocity at this latitude [e.g.. 1,2,3], we have searched for variations iIi both feature latitude and velocity with longitude and time. In particular, we focused on the repetitive chevron-shaped dark spots visible on most dates and the more transient large anticyclonic system known as the South Equatorial Disturbance (SED). These small dark spots are interpreted as cloud holes, and are often used as material tracers of the wind field.

Numerical Analysis of Combined Well and Open-Closed Loops Geothermal (CWG) Systems

NASA Astrophysics Data System (ADS)

Park, Yu-Chul

2016-04-01

Open-loop geothermal heat pump (GHP) system and closed-loop heat pump systems have been used in Korea to reduce emission of greenhouse gases such as carbon dioxide (CO2). The GHP systems have the pros and cons, for example, the open-loop GHP system is good energy-efficient and the closed-loop GHP system requires minimum maintenance costs. The open-loop GHP system can be used practically only with large amount of groundwater supply. The closed-loop GHP system can be used with high costs of initial installation. The performance and efficiency of the GHP system depend on the characteristics of the GHP system itself in addition to the geologic conditions. To overcome the cons of open-loop or closed-loop GHP system, the combined well and open-closed loops geothermal (CWG) system was designed. The open-loop GHP system is surrounded with closed-loop GHP systems in the CWG system. The geothermal energy in closed-loop GHP systems is supplied by the groundwater pumped by the open-loop GHP system. In this study, 2 different types of the CWG systems (small aperture hybrid CWG system and large aperture CWG system) are estimated using numerical simulation models in the aspect of energy efficiency. This work was supported by the New & Renewable Energy Core Technology Program of the Korea Institute of Energy Technology Evaluation and Planning (KETEP), granted financial resource from the Ministry of Trade, Industry & Energy, Republic of Korea. (No.20153030111120).

System identification from closed-loop data with known output feedback dynamics

NASA Technical Reports Server (NTRS)

Phan, Minh; Juang, Jer-Nan; Horta, Lucas G.; Longman, Richard W.

1992-01-01

This paper presents a procedure to identify the open loop systems when it is operating under closed loop conditions. First, closed loop excitation data are used to compute the system open loop and closed loop Markov parameters. The Markov parameters, which are the pulse response samples, are then used to compute a state space representation of the open loop system. Two closed loop configurations are considered in this paper. The closed loop system can have either a linear output feedback controller or a dynamic output feedback controller. Numerical examples are provided to illustrate the proposed closed loop identification method.

Autoregulatory Characteristics of a Bacillus anthracis Serine/Threonine Kinase▿

PubMed Central

Bryant-Hudson, Katie M.; Shakir, Salika M.; Ballard, Jimmy D.

2011-01-01

BA-Stk1 is a serine/threonine kinase (STK) expressed by Bacillus anthracis. In previous studies, we found that BA-Stk1 activity is modulated through dephosphorylation by a partner phosphatase, BA-Stp1. In this study, we identified critical phosphorylation regions of BA-Stk1 and determined the contributions of these phosphodomains to autophosphorylation and substrate phosphorylation. The data indicate that BA-Stk1 undergoes trans-autophosphorylation within a regulatory domain, referred to as the activation loop, which carries eight putative regulatory serine and threonine residues. We identified activation loop mutants that impacted kinase activity in three different manners: regulation of autophosphorylation (T162), regulation of substrate phosphorylation (T159 and S169), and regulation of overall kinase activity (T163). Tandem mass spectrometry (MS/MS) analysis of the phosphorylation profile of each mutant revealed a second site of phosphorylation on the kinase that was influenced by the phosphorylation status of the activation loop. This second region of the kinase contained a single phosphorylation residue, S214. Previous work has shown S214 to be necessary for downstream substrate phosphorylation, and we have shown that this residue is subject to dephosphorylation by BA-Stp1. These findings indicate a connection between the phosphorylation status of the activation loop and phosphorylation of S214, and this suggests a previously undescribed model for how a bacterial STK shifts from a state of autophosphorylation to targeting downstream substrates. PMID:21296958

Contrasting effects of climatic variability on the demography of a trans-equatorial migratory seabird.

PubMed

Genovart, Meritxell; Sanz-Aguilar, Ana; Fernández-Chacón, Albert; Igual, Jose M; Pradel, Roger; Forero, Manuela G; Oro, Daniel

2013-01-01

Large-scale seasonal climatic indices, such as the North Atlantic Oscillation (NAO) index or the Southern Oscillation Index (SOI), account for major variations in weather and climate around the world and may influence population dynamics in many organisms. However, assessing the extent of climate impacts on species and their life-history traits requires reliable quantitative statistical approaches. We used a new analytical tool in mark-recapture, the multi-event modelling, to simultaneously assess the influence of climatic variation on multiple demographic parameters (i.e. adult survival, transient probability, reproductive skipping and nest dispersal) at two Mediterranean colonies of the Cory's shearwater Calonectris diomedea, a trans-equatorial migratory long-lived seabird. We also analysed the impact of climate in the breeding success at the two colonies. We found a clear temporal variation of survival for Cory's shearwaters, strongly associated to the large-scale SOI especially in one of the colonies (up to 66% of variance explained). Atlantic hurricane season is modulated by the SOI and coincides with shearwater migration to their wintering areas, directly affecting survival probabilities. However, the SOI was a better predictor of survival probabilities than the frequency of hurricanes; thus, we cannot discard an indirect additive effect of SOI via food availability. Accordingly, the proportion of transients was also correlated with SOI values, indicating higher costs of first reproduction (resulting in either mortality or permanent dispersal) when bad environmental conditions occurred during winter before reproduction. Breeding success was also affected by climatic factors, the NAO explaining c. 41% of variance, probably as a result of its effect in the timing of peak abundance of squid and small pelagics, the main prey for shearwaters. No climatic effect was found either on reproductive skipping or on nest dispersal. Contrarily to what we expect for a long-lived organism, large-scale climatic indexes had a more pronounced effect on survival and transient probabilities than on less sensitive fitness parameters such reproductive skipping or nest dispersal probabilities. The potential increase in hurricane frequency because of global warming may interact with other global change agents (such as incidental bycatch and predation by alien species) nowadays impacting shearwaters, affecting future viability of populations. © 2012 The Authors. Journal of Animal Ecology © 2012 British Ecological Society.

Lithospheric Flexural Modeling of Iapetus' Equatorial Ridge

NASA Astrophysics Data System (ADS)

Zheng, W.; Ip, W.-H.; Teng, L. S.

2012-04-01

Iapetus, which is one of Saturn's ball-shaped satellites, has some unique features in the Solar System. This satellite has a mean radius of 735 km, and there is an approximately 20-kilometer-high mountain lying precisely on its equator. The mountain is known as an "equatorial ridge" since it makes Iapetus appear walnut shaped. The origin of the equatorial ridge is attributed to several hypotheses, including different endogenesis and exogenesis processes. In this work, we attempted to construct a flexural model of the equatorial ridge using elastic lithosphere theory. The equatorial ridge is treated as a linear load which exerts uniform force on Iapetus' hard shell (i.e. elastic lithosphere of Iapetus). To calculate the deflection of surface, we use the Digital Terrain Model (DTM) data of Iapetus' leading side published by Giese et al. (2008). Giese et al. also pointed out that the elastic lithospheric thickness of Iapetus must exceed 100 km to support the ridge without deflecting. However, we found possible evidence in the DTM data that implied deflection. There are two sites of surface depression on the northern side of the equatorial ridge. The few-kilometer deflection implies a thinner lithosphere than previous suggested. Assume that the thickness of elastic lithosphere is only 5% below of the radius of Iapetus, so the flat-Earth and one-plate condition could adapt to the flexure model of Iapetus. Based on analysis of the distance between a bulge and the ridge, the calculated lithospheric thickness is 6-10 km. The new result seems controversial, but the modeled surface profile is highly consistent with numerical ridge DTM profile extracted from Giese et al. (2008). Thinner lithosphere also supports the contraction model proposed by Sandwell and Schubert (2010) since the bucking harmonic degree increases. In the other hand, the transformation layer between hard shell and plastic inner core may need constraint on thermal history or crystal form of ice. In conclusion, The flexural model of Iapetus' equatorial ridge reveals the possibility of thinner hard shell, fits the surface profile, and supplies more clues to the origin of Iapetus, the interesting satellite in the Solar System.

High Spatiotemporal Resolution Dynamic Contrast-Enhanced MR Enterography in Crohn Disease Terminal Ileitis Using Continuous Golden-Angle Radial Sampling, Compressed Sensing, and Parallel Imaging.

PubMed

Ream, Justin M; Doshi, Ankur; Lala, Shailee V; Kim, Sooah; Rusinek, Henry; Chandarana, Hersh

2015-06-01

The purpose of this article was to assess the feasibility of golden-angle radial acquisition with compress sensing reconstruction (Golden-angle RAdial Sparse Parallel [GRASP]) for acquiring high temporal resolution data for pharmacokinetic modeling while maintaining high image quality in patients with Crohn disease terminal ileitis. Fourteen patients with biopsy-proven Crohn terminal ileitis were scanned using both contrast-enhanced GRASP and Cartesian breath-hold (volume-interpolated breath-hold examination [VIBE]) acquisitions. GRASP data were reconstructed with 2.4-second temporal resolution and fitted to the generalized kinetic model using an individualized arterial input function to derive the volume transfer coefficient (K(trans)) and interstitial volume (v(e)). Reconstructions, including data from the entire GRASP acquisition and Cartesian VIBE acquisitions, were rated for image quality, artifact, and detection of typical Crohn ileitis features. Inflamed loops of ileum had significantly higher K(trans) (3.36 ± 2.49 vs 0.86 ± 0.49 min(-1), p < 0.005) and v(e) (0.53 ± 0.15 vs 0.20 ± 0.11, p < 0.005) compared with normal bowel loops. There were no significant differences between GRASP and Cartesian VIBE for overall image quality (p = 0.180) or detection of Crohn ileitis features, although streak artifact was worse with the GRASP acquisition (p = 0.001). High temporal resolution data for pharmacokinetic modeling and high spatial resolution data for morphologic image analysis can be achieved in the same acquisition using GRASP.

Cross-over endocytosis of claudins is mediated by interactions via their extracellular loops.

PubMed

Gehne, Nora; Lamik, Agathe; Lehmann, Martin; Haseloff, Reiner F; Andjelkovic, Anuska V; Blasig, Ingolf E

2017-01-01

Claudins (Cldns) are transmembrane tight junction (TJ) proteins that paracellularly seal endo- and epithelial barriers by their interactions within the TJs. However, the mechanisms allowing TJ remodeling while maintaining barrier integrity are largely unknown. Cldns and occludin are heterophilically and homophilically cross-over endocytosed into neighboring cells in large, double membrane vesicles. Super-resolution microscopy confirmed the presence of Cldns in these vesicles and revealed a distinct separation of Cldns derived from opposing cells within cross-over endocytosed vesicles. Colocalization of cross-over endocytosed Cldn with the autophagosome markers as well as inhibition of autophagosome biogenesis verified involvement of the autophagosomal pathway. Accordingly, cross-over endocytosed Cldns underwent lysosomal degradation as indicated by lysosome markers. Cross-over endocytosis of Cldn5 depended on clathrin and caveolin pathways but not on dynamin. Cross-over endocytosis also depended on Cldn-Cldn-interactions. Amino acid substitutions in the second extracellular loop of Cldn5 (F147A, Q156E) caused impaired cis- and trans-interaction, as well as diminished cross-over endocytosis. Moreover, F147A exhibited an increased mobility in the membrane, while Q156E was not as mobile but enhanced the paracellular permeability. In conclusion, the endocytosis of TJ proteins depends on their ability to interact strongly with each other in cis and trans, and the mobility of Cldns in the membrane is not necessarily an indicator of barrier permeability. TJ-remodeling via cross-over endocytosis represents a general mechanism for the degradation of transmembrane proteins in cell-cell contacts and directly links junctional membrane turnover to autophagy.

Characterization of the Trans Watson-Crick GU Base Pair Located in the Catalytic Core of the Antigenomic HDV Ribozyme

PubMed Central

Lévesque, Dominique; Reymond, Cédric; Perreault, Jean-Pierre

2012-01-01

The HDV ribozyme’s folding pathway is, by far, the most complex folding pathway elucidated to date for a small ribozyme. It includes 6 different steps that have been shown to occur before the chemical cleavage. It is likely that other steps remain to be discovered. One of the most critical of these unknown steps is the formation of the trans Watson-Crick GU base pair within loop III. The U23 and G28 nucleotides that form this base pair are perfectly conserved in all natural variants of the HDV ribozyme, and therefore are considered as being part of the signature of HDV-like ribozymes. Both the formation and the transformation of this base pair have been studied mainly by crystal structure and by molecular dynamic simulations. In order to obtain physical support for the formation of this base pair in solution, a set of experiments, including direct mutagenesis, the site-specific substitution of chemical groups, kinetic studies, chemical probing and magnesium-induced cleavage, were performed with the specific goal of characterizing this trans Watson-Crick GU base pair in an antigenomic HDV ribozyme. Both U23 and G28 can be substituted for nucleotides that likely preserve some of the H-bond interactions present before and after the cleavage step. The formation of the more stable trans Watson-Crick base pair is shown to be a post-cleavage event, while a possibly weaker trans Watson-Crick/Hoogsteen interaction seems to form before the cleavage step. The formation of this unusually stable post-cleavage base pair may act as a driving force on the chemical cleavage by favouring the formation of a more stable ground state of the product-ribozyme complex. To our knowledge, this represents the first demonstration of a potential stabilising role of a post-cleavage conformational switch event in a ribozyme-catalyzed reaction. PMID:22768274

Continuous day-time time series of E-region equatorial electric fields derived from ground magnetic observatory data

NASA Astrophysics Data System (ADS)

Alken, P.; Chulliat, A.; Maus, S.

2012-12-01

The day-time eastward equatorial electric field (EEF) in the ionospheric E-region plays an important role in equatorial ionospheric dynamics. It is responsible for driving the equatorial electrojet (EEJ) current system, equatorial vertical ion drifts, and the equatorial ionization anomaly (EIA). Due to its importance, there is much interest in accurately measuring and modeling the EEF. However, there are limited sources of direct EEF measurements with full temporal and spatial coverage of the equatorial ionosphere. In this work, we propose a method of estimating a continuous day-time time series of the EEF at any longitude, provided there is a pair of ground magnetic observatories in the region which can accurately track changes in the strength of the EEJ. First, we derive a climatological unit latitudinal current profile from direct overflights of the CHAMP satellite and use delta H measurements from the ground observatory pair to determine the magnitude of the current. The time series of current profiles is then inverted for the EEF by solving the governing electrodynamic equations. While this method has previously been applied and validated in the Peruvian sector, in this work we demonstrate the method using a pair of magnetometers in Africa (Samogossoni, SAM, 0.18 degrees magnetic latitude and Tamanrasset, TAM, 11.5 degrees magnetic latitude) and validate the resulting EEF values against the CINDI ion velocity meter (IVM) instrument on the C/NOFS satellite. We find a very good 80% correlation with C/NOFS IVM measurements and a root-mean-square difference of 9 m/s in vertical drift velocity. This technique can be extended to any pair of ground observatories which can capture the day-time strength of the EEJ. We plan to apply this work to more observatory pairs around the globe and distribute real-time equatorial electric field values to the community.

Safety-factor profile tailoring by improved electron cyclotron system for sawtooth control and reverse shear scenarios in ITER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zucca, C.; Sauter, O.; Fable, E.

2008-11-01

The effect of the predicted local electron cyclotron current driven by the optimized electron cyclotron system on ITER is discussed. A design variant was recently proposed to enlarge the physics program covered by the upper and equatorial launchers. By extending the functionality range of the upper launcher, significant control capabilities of the sawtooth period can be obtained. The upper launcher improvement still allows enough margin to exceed the requirements for neoclassical tearing mode stabilization, for which it was originally designed. The analysis of the sawtooth control is carried on with the ASTRA transport code, coupled with the threshold model bymore » Por-celli, to study the control capabilities of the improved upper launcher on the sawtooth instability. The simulations take into account the significant stabilizing effect of the fusion alpha particles. The sawtooth period can be increased by a factor of 1.5 with co-ECCD outside the q = 1 surface, and decreased by at least 30% with co-ECCD inside q = 1. The present ITER base-line design has the electron cyclotron launchers providing only co-ECCD. The variant for the equatorial launcher proposes the possibility to drive counter-ECCD with 1 of the 3 rows of mirrors: the counter-ECCD can then be balanced with co-ECCD and provide pure ECH with no net driven current. The difference between full co-ECCD off-axis using all 20MW from the equatorial launcher and 20MW co-ECCD driven by 2/3 from the equatorial launcher and 1/3 from the upper launcher is shown to be negligible. Cnt-ECCD also offers greater control of the plasma current density, therefore this analysis addresses the performance of the equatorial launcher to control the central q profile. The equatorial launcher is shown to control very efficiently the value of q{sub 0.2}-q{sub min} in advanced scenarios, if one row provides counter-ECCD.« less

Observations of equatorial ionization anomaly over Africa and Middle East during a year of deep minimum

NASA Astrophysics Data System (ADS)

Bolaji, Olawale; Owolabi, Oluwafisayo; Falayi, Elijah; Jimoh, Emmanuel; Kotoye, Afolabi; Odeyemi, Olumide; Rabiu, Babatunde; Doherty, Patricia; Yizengaw, Endawoke; Yamazaki, Yosuke; Adeniyi, Jacob; Kaka, Rafiat; Onanuga, Kehinde

2017-01-01

In this work, we investigated the veracity of an ion continuity equation in controlling equatorial ionization anomaly (EIA) morphology using total electron content (TEC) of 22 GPS receivers and three ground-based magnetometers (Magnetic Data Acquisition System, MAGDAS) over Africa and the Middle East (Africa-Middle East) during the quietest periods. Apart from further confirmation of the roles of equatorial electrojet (EEJ) and integrated equatorial electrojet (IEEJ) in determining hemispheric extent of EIA crest over higher latitudes, we found some additional roles played by thermospheric meridional neutral wind. Interestingly, the simultaneous observations of EIA crests in both hemispheres of Africa-Middle East showed different morphology compared to that reported over Asia. We also observed interesting latitudinal twin EIA crests domiciled at the low latitudes of the Northern Hemisphere. Our results further showed that weak EEJ strength associated with counter electrojet (CEJ) during sunrise hours could also trigger twin EIA crests over higher latitudes.

Novel stereocontrolled approach to syn- and anti-oxepene-cyclogeranyl trans-fused polycyclic systems: asymmetric total synthesis of (-)-Aplysistatin, (+)-Palisadin A, (+)-Palisadin B, (+)-12-hydroxy-palisadin B, and the AB ring system of adociasulfate-2 and toxicol A.

PubMed

Couladouros, Elias A; Vidali, Veroniki P

2004-08-06

A new stereocontrolled method for the formation of trans-anti cyclogeranyl-oxepene systems is described. The demanding stereochemistry is secured by stereoselective coupling of a cyclogeranyl tertiary alcohol with a 1,2-unsymmetrically substituted epoxide, while the formation of the highly strained oxepene is achieved employing ring-closing metathesis. Since the stereochemistry of the trans-fused 6,7-ring system is determined by the epoxide, the method also allows the construction of trans-syn 6,7-ring systems. This approach leads to the synthesis of the AB fragment of Adociasulfate-2 and Toxicol A, for the first time. The flexibility and efficiency of the presented strategy is demonstrated by the total asymmetric synthesis of (-)-Aplysistatin, (+)-Palisadin A, (+)-12-hydroxy-Palisadin B, and (+)-Palisadin B, employing two similar key intermediates.

ISKANDARnet IOMOS: Near real-time equatorial space weather monitoring and alert system in Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Musa, Tajul Ariffin; Leong, Shien Kwun; Abdullah, Khairul Anuar; Othman, Rusli

2012-11-01

This work proposes ISKANDARnet Ionospheric Outburst MOnitoring and alert System (IOMOS), along with Ionospheric Outburst Index (IOX) to develop an operational near real-time space weather service for Malaysia. The IOMOS is based on Global Positioning System (GPS) Network-based Real-Time Kinematic (NRTK) concept which is by nature for atmospheric (ionosphere and troposphere) modeling within the network coverage. The elegance of this solution lies in the fact that IOMOS utilize differential ionospheric residual from network of GPS baselines which incur no additional cost for operation. Users will be informed about the ionospheric perturbation through Short Message Service (SMS), email or Twitter®. This approach will ultimately beneficial for the navigation and satellite positioning communities, particularly during the coming Solar Cycle 24. In addition, a combination of local and global GPS network has been employed to study the equatorial ionosphere geomorphology and climatology in the Malaysian sector. Equatorial Total Electron Content (TEC) over Malaysia shows semi-annual, annual, and seasonal variations with maximum values appearing during equinoctial months and minimum during solstices months. The TEC value during vernal equinox is about 21% higher than autumnal equinox, and December solstice exceeds that at the June solstice by around 14%. It is also found that semi-annual variation is present at all levels of solar activity, whereas June solstice predominates December solstice during high solar activity for annual and seasonal variations. In near future, a near real-time TEC derivation system will be developed to support equatorial ionosphere modeling to enhance space weather service for Malaysia.

Gamma ray satellite to be launched from Africa

NASA Technical Reports Server (NTRS)

Allaway, H. G.; Senstad, K.

1972-01-01

The announcement is presented of the launch of NASA's Small Astronomy Satellite B (SAS-B) on 2 Nov. 1972, to study gamma rays. The launch is to be from the Italian-operated San Marco Equatorial Range in the Indian Ocean for ease in acquiring an equatorial orbit. The spacecraft systems described include: stabilization and control, communication, and spark chamber gamma ray telescope. The results of Uhuru (Explorer 42) are also presented.

Optimization of the ITER electron cyclotron equatorial launcher for improved heating and current drive functional capabilities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Farina, D.; Figini, L.; Henderson, M.

2014-06-15

The design of the ITER Electron Cyclotron Heating and Current Drive (EC H and CD) system has evolved in the last years both in goals and functionalities by considering an expanded range of applications. A large effort has been devoted to a better integration of the equatorial and the upper launchers, both from the point of view of the performance and of the design impact on the engineering constraints. However, from the analysis of the ECCD performance in two references H-mode scenarios at burn (the inductive H-mode and the advanced non-inductive scenario), it was clear that the EC power depositionmore » was not optimal for steady-state applications in the plasma region around mid radius. An optimization study of the equatorial launcher is presented here aiming at removing this limitation of the EC system capabilities. Changing the steering of the equatorial launcher from toroidal to poloidal ensures EC power deposition out to the normalized toroidal radius ρ ≈ 0.6, and nearly doubles the EC driven current around mid radius, without significant performance degradation in the core plasma region. In addition to the improved performance, the proposed design change is able to relax some engineering design constraints on both launchers.« less

Signature of 3-4 day planetary waves in the equatorial ionospheric F layer height and medium frequency radar winds over Tirunelveli (8.7oN)

NASA Astrophysics Data System (ADS)

Sundararaman, Sathishkumar

Signature of 3-4 day planetary waves in the equatorial ionospheric F layer height and medium frequency radar winds over Tirunelveli (8.7oN) S. Sathishkumar1, R. Dhanya1, K. Emperumal1, D. Tiwari2, S. Gurubaran1 and A. Bhattacharyya2 1. Equatorial Geophysical Research Laboratory, Indian Institute of Geomagnetism, Tirunelveli, India 2. Indian Institute of Geomagnetism, Navi Mumbai, India Email: sathishmaths@gmail.com Abstract The equatorial atmosphere-ionosphere system has been studied theoretically and observationally in the past. In the equatorial atmosphere, oscillations with periods of 3-4 days are often observed in the medium frequency (MF) radar over Tirunelveli (8.7oN, 77.8oE, 1.34oN geomag. lat.). Earlier observations show the clear evidence that these waves can propagate from the stratosphere to ionosphere. A digital ionosonde has been providing useful information on several ionospheric parameters from the same site. Simultaneous observations of mesospheric winds using medium frequency radar and F-layer height (h'F) from ionosonde reveal that the 3-4 day wave was evident in both the component during the 01 June 2007 and 31 July 2007. The 3-4 day wave could have an important role in the day to day variability of the equatorial ionosphere evening uplift. Results from an extensive analysis that is being carried out in the direction of 3-4 day wave present in the ionosphere will be presented.

Seasonal influence of ENSO on the Atlantic ITCZ and equatorial South America

NASA Astrophysics Data System (ADS)

Münnich, M.; Neelin, J. D.

2005-11-01

In late boreal spring, especially May, a strong relationship exists in observations among precipitation anomalies over equatorial South America and the Atlantic intertropical convergence zone (ITCZ), and eastern equatorial Pacific and central equatorial Atlantic sea surface temperature anomalies (SSTA). A chain of correlations of equatorial Pacific SSTA, western equatorial Atlantic wind stress (WEA), equatorial Atlantic SSTA, sea surface height, and precipitation supports a causal chain in which El Niño/Southern Oscillation (ENSO) induces WEA stress anomalies, which in turn affect Atlantic equatorial ocean dynamics. These correlations show strong seasonality, apparently arising within the atmospheric links of the chain. This pathway and the influence of equatorial Atlantic SSTA on South American rainfall in May appear independent of that of the northern tropical Atlantic. Brazil's Nordeste is affected by the northern tropical Atlantic. The equatorial influence lies further to the north over the eastern Amazon and the Guiana Highlands.

High Torque-to-Inertia Servo System for Stabilizing Sensor Systems. Candidate Systems Include Missile Guidance, Surveillance, and Tracking

DTIC Science & Technology

1980-04-01

specifications ... 3-10 25. Typical isolation curve ... 3-12 26. Servo amp/motor/load frequency response (inner gimbal) ... 4-3 27. Slave loop ( open loop...slave loop ( open loop) frequency response (inner gimbal) . . . 4-4 30. Slave loop (closed loop) frequency response (inner gimbal) ... 4-5 3 . Slave...loop inner gimbal time response ... 4-5 32. Servo amp/motor/load frequency response (outer gimbal) ... 4-6 33. Slave loop ( open loop) uncompensated

Impact of Swarm GPS receiver updates on POD performance

NASA Astrophysics Data System (ADS)

van den IJssel, Jose; Forte, Biagio; Montenbruck, Oliver

2016-05-01

The Swarm satellites are equipped with state-of-the-art Global Positioning System (GPS) receivers, which are used for the precise geolocation of the magnetic and electric field instruments, as well as for the determination of the Earth's gravity field, the total electron content and low-frequency thermospheric neutral densities. The onboard GPS receivers deliver high-quality data with an almost continuous data rate. However, the receivers show a slightly degraded performance when flying over the geomagnetic poles and the geomagnetic equator, due to ionospheric scintillation. Furthermore, with only eight channels available for dual-frequency tracking, the amount of collected GPS tracking data is relatively low compared with various other missions. Therefore, several modifications have been implemented to the Swarm GPS receivers. To optimise the amount of collected GPS data, the GPS antenna elevation mask has slowly been reduced from 10° to 2°. To improve the robustness against ionospheric scintillation, the bandwidths of the GPS receiver tracking loops have been widened. Because these modifications were first implemented on Swarm-C, their impact can be assessed by a comparison with the close flying Swarm-A satellite. This shows that both modifications have a positive impact on the GPS receiver performance. The reduced elevation mask increases the amount of GPS tracking data by more than 3 %, while the updated tracking loops lead to around 1.3 % more observations and a significant reduction in tracking losses due to severe equatorial scintillation. The additional observations at low elevation angles increase the average noise of the carrier phase observations, but nonetheless slightly improve the resulting reduced-dynamic and kinematic orbit accuracy as shown by independent satellite laser ranging (SLR) validation. The more robust tracking loops significantly reduce the large carrier phase observation errors at the geomagnetic poles and along the geomagnetic equator and do not degrade the observations at midlatitudes. SLR validation indicates that the updated tracking loops also improve the reduced-dynamic and kinematic orbit accuracy. It is expected that the Swarm gravity field recovery will benefit from the improved kinematic orbit quality and potentially also from the expected improvement of the kinematic baseline determination and the anticipated reduction in the systematic gravity field errors along the geomagnetic equator. Finally, other satellites that carry GPS receivers that encounter similar disturbances might also benefit from this analysis.

Airborne tracking sunphotometer apparatus and system

NASA Technical Reports Server (NTRS)

Matsumoto, Yutaka (Inventor); Mina, Cesar (Inventor); Russell, Philip B. (Inventor); Vanark, William B. (Inventor)

1987-01-01

An airborne tracking Sun photometer apparatus has a rotatable dome. An azimuth drive motor is connected to rotate the dome. The dome has an equatorial slot. A cylindrical housing is pivotally mounted inside the dome at the equatorial slot. A photometer is mounted in the housing to move in the equatorial slot as the housing pivots. The photometer has an end facing from the slot with an optical flat transparent window. An elevation drive motor is connected to pivot the cylindrical housing. The rotatable dome is mounted in the bulkhead of an aircraft to extend from the interior of the aircraft. A Sun sensor causes the photometer to track the Sun automatically. Alternatively, the photometer may be oriented manually or by computer.

Ongoing Analysis of Jupiter's Equatorial Hotspots and Plumes from Cassini

NASA Technical Reports Server (NTRS)

Choi, D. S.; Showmwn, A. P.; Vasavada, A. R.; Simon-Miller, A. A.

2012-01-01

We present updated results from our ongoing analysis of Cassini observations of Jupiter's equatorial meteorology. For two months preceding the spacecraft's closest approach of the planet, the ISS instrument onboard Cassini regularly imaged the atmosphere of Jupiter. We created time-lapse movies from this period that show the complex activity and interactions of the equatorial atmosphere. During this period, hot spots exhibited significant variations in size and shape over timescales of days and weeks. Some of these changes appear to be a result of interactions with passing vortex systems in adjacent latitudes. Strong anticyclonic gyres to the southeast of the dark areas converge with flow from the west and appear to circulate into a hot spot at its southwestern corner.

A geospatial framework for dynamic route planning using congestion prediction in transportation systems.

DOT National Transportation Integrated Search

2011-01-01

The goal this research is to develop an end-to-end data-driven system, dubbed TransDec : (short for Transportation Decision-Making), to enable decision-making queries in : transportation systems with dynamic, real-time and historical data. With Trans...

Estimating new production in the equatorial Pacific Ocean at 150 deg W

NASA Technical Reports Server (NTRS)

Dugdale, Richard C.; Wilkerson, Frances P.; Barber, Richard T.; Chavez, Francisco P.

1992-01-01

A major goal of the WEC88 cruise of the R/V Wecoma to the equatorial Pacific (made in February-March 1988) was to establish rates of new production along a meridional section at 150 deg W and to compare these measured rates with the relatively high values for the equatorial Pacific that had been reported previously using indirect methods and models. Production values were obtained from the traditional approach using N-15 labeled nitrate uptake, and by using C-14 fixation values multiplied by f (proportion of new production) from various sources: from N-15 data, from a C-14 fixation-versus-f relationship, or from a nitrate-versus-f relationship. The ratios of directly measured nitrate and carbon uptake and the ratios of nitrate to nitrate plus ammonium uptake, i.e., values of f, agree well; values of f calculated from carbon uptake or from nitrate concentration are overestimates for the equatorial upwelling region. Carbon-to-nitrogen uptake ratios measured with C-14 and N-15, respectively, approximate the Redfield molar ratio, 6.6 C:N. The overall mean value of f (0.17) helps confirm the view that the low primary production in the enriched eastern equatorial Pacific is due to failure of the nitrate-uptake system.

General Results in Optimal Control of Discrete-Time Nonlinear Stochastic Systems

DTIC Science & Technology

1988-01-01

P. J. McLane, "Optimal Stochastic Control of Linear System. with State- and Control-Dependent Distur- bances," ZEEE Trans. 4uto. Contr., Vol. 16, No...Vol. 45, No. 1, pp. 359-362, 1987 (9] R. R. Mohler and W. J. Kolodziej, "An Overview of Stochastic Bilinear Control Processes," ZEEE Trans. Syst...34 J. of Math. anal. App.:, Vol. 47, pp. 156-161, 1974 [14) E. Yaz, "A Control Scheme for a Class of Discrete Nonlinear Stochastic Systems," ZEEE Trans

trans-Chalcone, a flavonoid precursor, inhibits UV-induced skin inflammation and oxidative stress in mice by targeting NADPH oxidase and cytokine production.

PubMed

Martinez, Renata M; Pinho-Ribeiro, Felipe A; Steffen, Vinicius S; Caviglione, Carla V; Fattori, Victor; Bussmann, Allan J C; Bottura, Carolina; Fonseca, Maria J V; Vignoli, Josiane A; Baracat, Marcela M; Georgetti, Sandra R; Verri, Waldiceu A; Casagrande, Rubia

2017-07-01

trans-Chalcone is a plant flavonoid precursor, which lacks broad investigation on its biological activity in inflammatory processes. In the present study, anti-inflammatory and antioxidant mechanisms of systemic administration with trans-chalcone, a flavonoid precursor, on ultraviolet (UV) irradiation-induced skin inflammation and oxidative stress in hairless mice were investigated by the following parameters: skin edema, myeloperoxidase activity (neutrophil marker), matrix metalloproteinase-9 activity, reduced glutathione levels, catalase activity, lipid peroxidation products, superoxide anion production, gp 91phox (NADPH oxidase subunit) mRNA expression by quantitative PCR and cytokine production by ELISA. Systemic treatment with trans-chalcone inhibited skin inflammation by reducing skin edema and neutrophil recruitment, and also inhibited matrix metalloproteinase-9 activity. trans-Chalcone also inhibited oxidative stress, gp 91phox mRNA expression, and the production of a wide range of pro-inflammatory cytokines, while it did not affect anti-inflammatory cytokines induced by UV irradiation. However, trans-chalcone did not prevent oxidative stress in vitro, suggesting that its in vivo effect is more related to anti-inflammatory properties rather than a direct antioxidant effect. In conclusion, treatment with trans-chalcone inhibited UV-induced skin inflammation resulting in oxidative stress inhibition in vivo. Therefore, systemic supplementation with this compound may represent an important therapeutic approach in inflammatory skin diseases induced by UV irradiation.

Jupiter Great Red Spot and South Equatorial Belt

NASA Image and Video Library

1996-09-26

NASA Voyager 2 shows the Great Red Spot and the south equatorial belt extending into the equatorial region. At right is an interchange of material between the south equatorial belt and the equatorial zone. The clouds in the equatorial zone are more diffuse and do not display the structures seen in other locations. Considerable structure is evident within the Great Red Spot. http://photojournal.jpl.nasa.gov/catalog/PIA00456

The Role of Ocean Dynamical Thermostat in Delaying the El Niño–Like Response over the Equatorial Pacific to Climate Warming

DOE PAGES

Luo, Yiyong; Lu, Jian; Liu, Fukai; ...

2017-03-27

The role of the ocean dynamics in the response of the equatorial Pacific Ocean to climate warming is investigated using both an atmosphere-ocean coupled climate system and its ocean component. Results show that the initial response (fast pattern) to an uniform heating imposed on to the ocean is a warming centered to the west of the dateline owing to the conventional ocean dynamical thermostat (ODT) mechanism in the eastern equatorial Pacific-a cooling effect arising from the up-gradient upwelling. In time, the warming pattern gradually propagates eastward, becoming more El Niño-like (slow pattern). The transition from the fast to the slowmore » patterns is likely resulted from i) the gradual warming of the equatorial thermocline temperature, which is associated with the arrival of the relatively warmer extratropical waters advected along the subsurface branch of the subtropical cells (STC) and ii) the reduction of the STC strength itself. A mixed layer heat budget analysis finds that it is the total ocean dynamical effect rather than the conventional ODT that holds the key for understanding the pattern of the SST in the equatorial Pacific and that the surface heat flux works mainly to compensate the ocean dynamics. Further passive tracer experiments with the ocean component of the coupled system verify the role of the ocean dynamical processes in initiating a La Niña-like SST warming and in setting the pace of the transition to an El Niño-like warming and identify an oceanic origin for the slow eastern Pacific warming independent of the weakening trade wind.« less

The Role of Ocean Dynamical Thermostat in Delaying the El Niño–Like Response over the Equatorial Pacific to Climate Warming

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Yiyong; Lu, Jian; Liu, Fukai

The role of the ocean dynamics in the response of the equatorial Pacific Ocean to climate warming is investigated using both an atmosphere-ocean coupled climate system and its ocean component. Results show that the initial response (fast pattern) to an uniform heating imposed on to the ocean is a warming centered to the west of the dateline owing to the conventional ocean dynamical thermostat (ODT) mechanism in the eastern equatorial Pacific-a cooling effect arising from the up-gradient upwelling. In time, the warming pattern gradually propagates eastward, becoming more El Niño-like (slow pattern). The transition from the fast to the slowmore » patterns is likely resulted from i) the gradual warming of the equatorial thermocline temperature, which is associated with the arrival of the relatively warmer extratropical waters advected along the subsurface branch of the subtropical cells (STC) and ii) the reduction of the STC strength itself. A mixed layer heat budget analysis finds that it is the total ocean dynamical effect rather than the conventional ODT that holds the key for understanding the pattern of the SST in the equatorial Pacific and that the surface heat flux works mainly to compensate the ocean dynamics. Further passive tracer experiments with the ocean component of the coupled system verify the role of the ocean dynamical processes in initiating a La Niña-like SST warming and in setting the pace of the transition to an El Niño-like warming and identify an oceanic origin for the slow eastern Pacific warming independent of the weakening trade wind.« less

Conditions for Stabilizability of Linear Switched Systems

NASA Astrophysics Data System (ADS)

Minh, Vu Trieu

2011-06-01

This paper investigates some conditions that can provide stabilizability for linear switched systems with polytopic uncertainties via their closed loop linear quadratic state feedback regulator. The closed loop switched systems can stabilize unstable open loop systems or stable open loop systems but in which there is no solution for a common Lyapunov matrix. For continuous time switched linear systems, we show that if there exists solution in an associated Riccati equation for the closed loop systems sharing one common Lyapunov matrix, the switched linear systems are stable. For the discrete time switched systems, we derive a Linear Matrix Inequality (LMI) to calculate a common Lyapunov matrix and solution for the stable closed loop feedback systems. These closed loop linear quadratic state feedback regulators guarantee the global asymptotical stability for any switched linear systems with any switching signal sequence.

An orbital emulator for pursuit-evasion game theoretic sensor management

NASA Astrophysics Data System (ADS)

Shen, Dan; Wang, Tao; Wang, Gang; Jia, Bin; Wang, Zhonghai; Chen, Genshe; Blasch, Erik; Pham, Khanh

2017-05-01

This paper develops and evaluates an orbital emulator (OE) for space situational awareness (SSA). The OE can produce 3D satellite movements using capabilities generated from omni-wheeled robot and robotic arm motion methods. The 3D motion of a satellite is partitioned into the movements in the equatorial plane and the up-down motions in the vertical plane. The 3D actions are emulated by omni-wheeled robot models while the up-down motions are performed by a stepped-motor-controlled-ball along a rod (robotic arm), which is attached to the robot. For multiple satellites, a fast map-merging algorithm is integrated into the robot operating system (ROS) and simultaneous localization and mapping (SLAM) routines to locate the multiple robots in the scene. The OE is used to demonstrate a pursuit-evasion (PE) game theoretic sensor management algorithm, which models conflicts between a space-based-visible (SBV) satellite (as pursuer) and a geosynchronous (GEO) satellite (as evader). The cost function of the PE game is based on the informational entropy of the SBV-tracking-GEO scenario. GEO can maneuver using a continuous and low thruster. The hard-in-loop space emulator visually illustrates the SSA problem solution based PE game.

L-Band Ionosphere Scintillations Observed by A GNSS Receiver Array at HAARP

NASA Astrophysics Data System (ADS)

Morton, Y.; Pelgrum, W.; van Graas, F.

2011-12-01

As we enter a new solar maximum period, GNSS receivers, especially the ones operating in high latitude and equatorial regions, are facing an increasing threat from ionosphere scintillations. The increased solar activities, however, also offer a great opportunity to collect scintillation data to gain better understandings of scintillation effects on GNSS signals. During the past decade, many GPS receivers have been deployed around the globe to monitor ionosphere scintillations. Most of these GPS receivers are commercial receivers whose tracking mechanisms are not designed to operate under ionosphere scintillation. When strong scintillations occur, these receivers will either generate erroneous outputs or completely lose lock. Even when the scintillation is mild, the tracking loop outputs are not true representation of the signal parameters due the tracking loop transfer function. High quality, unprocessed GNSS receiver front end raw IF samples collected during ionosphere scintillations are necessary to produce realistic scintillation signal parameter estimations. In this presentation, we will update our effort in establishing a unique GNSS receiver array at HAARP, Alaska to collect GPS and GLONASS satellite signals at various stages of the GNSS receiver processing. Signal strength, carrier phase, and relative TEC measurements generated by the receiver array as well as additional on-site diagnostic instrumentation measurements obtained from two active heating experiment campaigns conducted in 2011 will be presented. Additionally, we will also highlight and contrast the artificial heating experiment results with observations of natural scintillation events captured by our receivers using an automatic event trigger mechanism during the past year. These interesting results demonstrate the feasibility and effectiveness of our experimental data collection system in providing insightful details of ionosphere responses to active perturbations and natural disturbances.

Sensitivity of Coupled Tropical Pacific Model Biases to Convective Parameterization in CESM1

NASA Astrophysics Data System (ADS)

Woelfle, M. D.; Yu, S.; Bretherton, C. S.; Pritchard, M. S.

2018-01-01

Six month coupled hindcasts show the central equatorial Pacific cold tongue bias development in a GCM to be sensitive to the atmospheric convective parameterization employed. Simulations using the standard configuration of the Community Earth System Model version 1 (CESM1) develop a cold bias in equatorial Pacific sea surface temperatures (SSTs) within the first two months of integration due to anomalous ocean advection driven by overly strong easterly surface wind stress along the equator. Disabling the deep convection parameterization enhances the zonal pressure gradient leading to stronger zonal wind stress and a stronger equatorial SST bias, highlighting the role of pressure gradients in determining the strength of the cold bias. Superparameterized hindcasts show reduced SST bias in the cold tongue region due to a reduction in surface easterlies despite simulating an excessively strong low-level jet at 1-1.5 km elevation. This reflects inadequate vertical mixing of zonal momentum from the absence of convective momentum transport in the superparameterized model. Standard CESM1simulations modified to omit shallow convective momentum transport reproduce the superparameterized low-level wind bias and associated equatorial SST pattern. Further superparameterized simulations using a three-dimensional cloud resolving model capable of producing realistic momentum transport simulate a cold tongue similar to the default CESM1. These findings imply convective momentum fluxes may be an underappreciated mechanism for controlling the strength of the equatorial cold tongue. Despite the sensitivity of equatorial SST to these changes in convective parameterization, the east Pacific double-Intertropical Convergence Zone rainfall bias persists in all simulations presented in this study.

Differentiating between Central Nervous System Lymphoma and High-grade Glioma Using Dynamic Susceptibility Contrast and Dynamic Contrast-enhanced MR Imaging with Histogram Analysis.

PubMed

Murayama, Kazuhiro; Nishiyama, Yuya; Hirose, Yuichi; Abe, Masato; Ohyu, Shigeharu; Ninomiya, Ayako; Fukuba, Takashi; Katada, Kazuhiro; Toyama, Hiroshi

2018-01-10

We evaluated the diagnostic performance of histogram analysis of data from a combination of dynamic susceptibility contrast (DSC)-MRI and dynamic contrast-enhanced (DCE)-MRI for quantitative differentiation between central nervous system lymphoma (CNSL) and high-grade glioma (HGG), with the aim of identifying useful perfusion parameters as objective radiological markers for differentiating between them. Eight lesions with CNSLs and 15 with HGGs who underwent MRI examination, including DCE and DSC-MRI, were enrolled in our retrospective study. DSC-MRI provides a corrected cerebral blood volume (cCBV), and DCE-MRI provides a volume transfer coefficient (K trans ) for transfer from plasma to the extravascular extracellular space. K trans and cCBV were measured from a round region-of-interest in the slice of maximum size on the contrast-enhanced lesion. The differences in t values between CNSL and HGG for determining the most appropriate percentile of K trans and cCBV were investigated. The differences in K trans , cCBV, and K trans /cCBV between CNSL and HGG were investigated using histogram analysis. Receiver operating characteristic (ROC) analysis of K trans , cCBV, and K trans /cCBV ratio was performed. The 30 th percentile (C30) in K trans and 80 th percentile (C80) in cCBV were the most appropriate percentiles for distinguishing between CNSL and HGG from the differences in t values. CNSL showed significantly lower C80 cCBV, significantly higher C30 K trans , and significantly higher C30 K trans /C80 cCBV than those of HGG. In ROC analysis, C30 K trans /C80 cCBV had the best discriminative value for differentiating between CNSL and HGG as compared to C30 K trans or C80 cCBV. The combination of K trans by DCE-MRI and cCBV by DSC-MRI was found to reveal the characteristics of vascularity and permeability of a lesion more precisely than either K trans or cCBV alone. Histogram analysis of these vascular microenvironments enabled quantitative differentiation between CNSL and HGG.

Assessment of Ionospheric Spatial Decorrelation for CAT I GBAS in Equatorial Region at Nominal days: Data Selection and Bias Removal

NASA Astrophysics Data System (ADS)

Chang, H.; Lee, J.

2017-12-01

Ground-based augmentations of global positioning system (GBAS) provide the user with the integrity parameter, standard deviation of vertical ionospheric gradient (σvig), to ensure integrity. σvig value currently available in CAT I GBAS is derived from the data collected from the reference stations located on the US mainland and have a value of 4 mm/km. However, since the equatorial region near the geomagnetic equator is relatively more active in the ionosphere than the mid-latitude region, there is a limit to applying σvig used in the mid-latitude region on the equatorial region. Also, since the ionospheric phenomena of daytime and nighttime in the equatorial region are significantly different, it is necessary to apply σvig whilst distinguishing the time zone. This study presents a method for obtaining standard deviation of vertical ionospheric gradient in the equatorial region at nominal days considering the equatorial ionosphere environment. We used the data collected from the Brazilian region near the geomagnetic equator in the nominal days. One of the distinguishing features of the equatorial ionosphere environment from the mid-latitude ionosphere environment is that the scintillation event occurs frequently. Therefore, the days used for the analysis were selected not only by geomagnetic indexes Kp (Planetary K index) and Dst (Disturbance storm index), but also by S4 (Scintillation index) which indicates scintillation event. In addition, unlike the ionospheric delay bias elimination method used in the mid-latitude region, the `Long-term ionospheric anomaly monitor (LTIAM)' used in this study utilized the bias removal method that applies different bias removal standards according to IPP (Ionospheric pierce point) distance in consideration of ionospheric activity. As a result, σvig values which are conservative enough to bound ionosphere spatial decorrelation for the equatorial region in nominal days are 8 mm/km for daytime and 19 mm/km for nighttime. Therefore, for CAT I GBAS operation in the equatorial region, σvig value that is twice as large as the σvig provided in the mid-latitude region needs to be applied in daytime, and the σvig value about two times greater than the σvig of daytime needs to be applied in nighttime.

Applicability of Bogota's TransMilenio BRT system to the United States : final report, May 2006.

DOT National Transportation Integrated Search

2006-05-01

Serving the city of Bogot, Colombia, TransMilenio is one of the worlds premier Bus Rapid Transit (BRT) systems. Commencing service in : December 2000, the system was carrying over one million passengers per day by early 2006 on a 40 mile network...

Mosaic expression of claudins in thick ascending limbs of Henle results in spatial separation of paracellular Na+ and Mg2+ transport

PubMed Central

Wulfmeyer, Vera Christine; Drewell, Hoora; Mutig, Kerim; Hou, Jianghui; Breiderhoff, Tilman; Müller, Dominik; Fromm, Michael; Bleich, Markus; Günzel, Dorothee

2017-01-01

The thick ascending limb (TAL) of Henle’s loop drives paracellular Na+, Ca2+, and Mg2+ reabsorption via the tight junction (TJ). The TJ is composed of claudins that consist of four transmembrane segments, two extracellular segments (ECS1 and -2), and one intracellular loop. Claudins interact within the same (cis) and opposing (trans) plasma membranes. The claudins Cldn10b, -16, and -19 facilitate cation reabsorption in the TAL, and their absence leads to a severe disturbance of renal ion homeostasis. We combined electrophysiological measurements on microperfused mouse TAL segments with subsequent analysis of claudin expression by immunostaining and confocal microscopy. Claudin interaction properties were examined using heterologous expression in the TJ-free cell line HEK 293, live-cell imaging, and Förster/FRET. To reveal determinants of interaction properties, a set of TAL claudin protein chimeras was created and analyzed. Our main findings are that (i) TAL TJs show a mosaic expression pattern of either cldn10b or cldn3/cldn16/cldn19 in a complex; (ii) TJs dominated by cldn10b prefer Na+ over Mg2+, whereas TJs dominated by cldn16 favor Mg2+ over Na+; (iii) cldn10b does not interact with other TAL claudins, whereas cldn3 and cldn16 can interact with cldn19 to form joint strands; and (iv) further claudin segments in addition to ECS2 are crucial for trans interaction. We suggest the existence of at least two spatially distinct types of paracellular channels in TAL: a cldn10b-based channel for monovalent cations such as Na+ and a spatially distinct site for reabsorption of divalent cations such as Ca2+ and Mg2+. PMID:28028216

An intrinsic agonist mechanism for activation of glucagon-like peptide-1 receptor by its extracellular domain

PubMed Central

Yin, Yanting; Zhou, X Edward; Hou, Li; Zhao, Li-Hua; Liu, Bo; Wang, Gaihong; Jiang, Yi; Melcher, Karsten; Xu, H Eric

2016-01-01

The glucagon-like peptide-1 receptor is a class B G protein coupled receptor (GPCR) that plays key roles in glucose metabolism and is a major therapeutic target for diabetes. The classic two-domain model for class B GPCR activation proposes that the apo-state receptor is auto-inhibited by its extracellular domain, which physically interacts with the transmembrane domain. The binding of the C-terminus of the peptide hormone to the extracellular domain allows the N-terminus of the hormone to insert into the transmembrane domain to induce receptor activation. In contrast to this model, here we demonstrate that glucagon-like peptide-1 receptor can be activated by N-terminally truncated glucagon-like peptide-1 or exendin-4 when fused to the receptor, raising the question regarding the role of N-terminal residues of peptide hormone in glucagon-like peptide-1 receptor activation. Mutations of cysteine 347 to lysine or arginine in intracellular loop 3 transform the receptor into a G protein-biased receptor and allow it to be activated by a nonspecific five-residue linker that is completely devoid of exendin-4 or glucagon-like peptide-1 sequence but still requires the presence of an intact extracellular domain. Moreover, the extracellular domain can activate the receptor in trans in the presence of an intact peptide hormone, and specific mutations in three extracellular loops abolished this extracellular domain trans-activation. Together, our data reveal a dominant role of the extracellular domain in glucagon-like peptide-1 receptor activation and support an intrinsic agonist model of the extracellular domain, in which peptide binding switches the receptor from the auto-inhibited state to the auto-activated state by releasing the intrinsic agonist activity of the extracellular domain. PMID:27917297

Effective field theory approach to trans-TeV supersymmetry: covariant matching, Yukawa unification and Higgs couplings

NASA Astrophysics Data System (ADS)

Wells, James D.; Zhang, Zhengkang

2018-05-01

Dismissing traditional naturalness concerns while embracing the Higgs boson mass measurement and unification motivates careful analysis of trans-TeV supersymmetric theories. We take an effective field theory (EFT) approach, matching the Minimal Supersymmetric Standard Model (MSSM) onto the Standard Model (SM) EFT by integrating out heavy superpartners, and evolving MSSM and SMEFT parameters according to renormalization group equations in each regime. Our matching calculation is facilitated by the recent covariant diagrams formulation of functional matching techniques, with the full one-loop SUSY threshold corrections encoded in just 30 diagrams. Requiring consistent matching onto the SMEFT with its parameters (those in the Higgs potential in particular) measured at low energies, and in addition requiring unification of bottom and tau Yukawa couplings at the scale of gauge coupling unification, we detail the solution space of superpartner masses from the TeV scale to well above. We also provide detailed views of parameter space where Higgs coupling measurements have probing capability at future colliders beyond the reach of direct superpartner searches at the LHC.

Human immunodeficiency virus type 1 Tat does not transactivate mature trans-acting responsive region RNA species in the nucleus or cytoplasm of primate cells.

PubMed Central

Chin, D J; Selby, M J; Peterlin, B M

1991-01-01

Human immunodeficiency virus (HIV)-encoded transactivator Tat is essential for viral gene expression and replication. By interacting with a nascent RNA stem-loop called the trans-acting responsive region (TAR). Tat increases rates of initiation and/or elongation of HIV transcription. Several reports have also suggested that Tat has additional effects on mature HIV RNA species including modification of primary transcripts in the nucleus and their increased translation in the cytoplasm. These posttranscriptional effects are most pronounced in the Xenopus oocyte. To investigate directly whether Tat has similar effects on viral transcripts in cells that are permissive for HIV replication, we cotransfected and microinjected human and monkey cells with Tat and TAR in the form of DNA or RNA. Whereas Tat transactivated TAR DNA targets, it did not transactivate TAR RNA targets in the nucleus of microinjected cells or in the cytoplasm of transfected cells. We conclude that in cells permissive for viral replication, Tat exerts its effect primarily at the level of HIV transcription. Images PMID:1900539

A triplex ribozyme expression system based on a single hairpin ribozyme.

PubMed

Aquino-Jarquin, Guillermo; Benítez-Hess, María Luisa; DiPaolo, Joseph A; Alvarez-Salas, Luis M

2008-09-01

Triplex ribozyme (RZ) configurations allow for the individual activity of trans-acting RZs in multiple expression cassettes (multiplex), thereby increasing target cleavage relative to conventionally expressed RZs. Although hairpin RZs have been advantageously compared to hammerhead RZs, their longer size and structural features complicated triplex design. We present a triplex expression system based on a single hairpin RZ with transcleavage capability and simple engineering. The system was tested in vitro using cis- and trans-cleavage kinetic assays against a known target RNA from HPV-16 E6/E7 mRNA. Single and multiplex triplex RZ constructs were more efficient in cleaving the target than tandem-cloned hairpin RZs, suggesting that the release of individual RZs enhanced trans-cleavage kinetics. Multiplex systems constructed with two different hairpin RZs resulted in better trans-cleavage compared to standard double-RZ constructs. In addition, the triplex RZ performed cis- and trans-cleavage in cervical cancer cells. The use of triplex configurations with multiplex RZs permit differential targeting of the same or different RNA, thus improving potential use against unstable targets. This prototype will provide the basis for the development of future RZ-based therapies and technologies.

ENSO Predictions in an Intermediate Coupled Model Influenced by Removing Initial Condition Errors in Sensitive Areas: A Target Observation Perspective

NASA Astrophysics Data System (ADS)

Tao, Ling-Jiang; Gao, Chuan; Zhang, Rong-Hua

2018-07-01

Previous studies indicate that ENSO predictions are particularly sensitive to the initial conditions in some key areas (socalled "sensitive areas"). And yet, few studies have quantified improvements in prediction skill in the context of an optimal observing system. In this study, the impact on prediction skill is explored using an intermediate coupled model in which errors in initial conditions formed to make ENSO predictions are removed in certain areas. Based on ideal observing system simulation experiments, the importance of various observational networks on improvement of El Niño prediction skill is examined. The results indicate that the initial states in the central and eastern equatorial Pacific are important to improve El Ni˜no prediction skill effectively. When removing the initial condition errors in the central equatorial Pacific, ENSO prediction errors can be reduced by 25%. Furthermore, combinations of various subregions are considered to demonstrate the efficiency on ENSO prediction skill. Particularly, seasonally varying observational networks are suggested to improve the prediction skill more effectively. For example, in addition to observing in the central equatorial Pacific and its north throughout the year, increasing observations in the eastern equatorial Pacific during April to October is crucially important, which can improve the prediction accuracy by 62%. These results also demonstrate the effectiveness of the conditional nonlinear optimal perturbation approach on detecting sensitive areas for target observations.

Effect of nanoparticle encapsulation on the photostability of the sunscreen agent, 2-ethylhexyl-p-methoxycinnamate.

PubMed

Perugini, P; Simeoni, S; Scalia, S; Genta, I; Modena, T; Conti, B; Pavanetto, F

2002-10-10

The aim of this study was to investigate the influence of nanoparticle-based systems on the light-induced decomposition of the sunscreen agent, trans-2-ethylhexyl-p-methoxycinnamate (trans-EHMC). Ethylcellulose (EC) and poly-D,L-lactide-co-glycolide (PLGA) were used as biocompatible polymers for the preparation of the particulate systems. The "salting out" method was used for nanoparticle preparation and several variables were evaluated in order to optimize product characteristics. The photodegradation of the sunscreen agent in emulsion vehicles was reduced by encapsulation into the PLGA nanoparticles (the extent of degradation was 35.3% for the sunscreen-loaded nanoparticles compared to 52.3% for free trans-EHMC) whereas the EC nanoparticle system had no significant effect. Therefore, PLGA nanoparticles loaded with trans-EHMC improve the photostability of the sunscreen agent.

Research on phase locked loop in optical memory servo system

NASA Astrophysics Data System (ADS)

Qin, Liqin; Ma, Jianshe; Zhang, Jianyong; Pan, Longfa; Deng, Ming

2005-09-01

Phase locked loop (PLL) is a closed loop automatic control system, which can track the phase of input signal. It widely applies in each area of electronic technology. This paper research the phase locked loop in optical memory servo area. This paper introduces the configuration of digital phase locked loop (PLL) and phase locked servo system, the control theory, and analyses system's stability. It constructs the phase locked loop experiment system of optical disk spindle servo, which based on special chip. DC motor is main object, this system adopted phase locked servo technique and digital signal processor (DSP) to achieve constant linear velocity (CLV) in controlling optical spindle motor. This paper analyses the factors that affect the stability of phase locked loop in spindle servo system, and discusses the affection to the optical disk readout signal and jitter due to the stability of phase locked loop.

The Cretaceous (Cenomanian) continental record of the Laje do Coringa flagstone (Alcântara Formation), northeastern South America

NASA Astrophysics Data System (ADS)

Medeiros, Manuel Alfredo; Lindoso, Rafael Matos; Mendes, Ighor Dienes; Carvalho, Ismar de Souza

2014-08-01

The fossil taxa of the Cenomanian continental flora and fauna of São Luís Basin are observed primarily in the bone bed of the Laje do Coringa, Alcântara Formation. Many of the disarticulated fish and tetrapod skeletal and dental elements are remarkably similar to the chronocorrelate fauna of Northern Africa. In this study, we present a summary of the continental flora and fauna of the Laje do Coringa bone-bed. The record emphasizes the existence of a trans-oceanic typical fauna, at least until the early Cenomanian, which may be interpreted as minor evolutionary changes after a major vicariant event or as a result of a land bridge across the equatorial Atlantic Ocean, thereby allowing interchanges between South America and Africa. The paleoenvironmental conditions in the northern Maranhão State coast during that time were inferred as forested humid areas surrounded by an arid to semi-arid landscape.

Year-round movements of a Wahlberg's eagle Aquila wahlbergi tracked by satellite

USGS Publications Warehouse

Meyburg, B.-U.; Mendelsohn, J.M.; Ellis, D.H.; Smith, D.G.; Meyburg, C.; Kemp, A.C.

1995-01-01

An adult female Wahlberg's Eagle from northern Namibia was tracked by satellite ovcr a total distance of 8816 km and located 104 times between 11 February and 4 November 1994. It migrated on an almost due north heading to northern Cameroon, north-eastern Nigeria and western Chad through the rain forest belt of the Congo and Zaire after the breeding season. The total trans-equatorial distance between the breeding and non-breeding ranges was 3520 km. During the non-breeding season the bird ranged over a large area (ca. 60 000 km2) for about six weeks (29 April - 14 June) in these three countries in a rather nomadic pattern covering a minimum distance of 1256 km. During two further months (14 June - 14 August) it restricted its movements to an area of about 50002 km near Maiduguri in the Sudan savannah of north-eastern Nigeria. The return migration took about two weeks longer than that to the north, which took about a month.

Seasonal variability of convectively coupled equatorial waves (CCEWs) in recent high-top CMIP5 models

NASA Astrophysics Data System (ADS)

Zakaria, Dzaki; Lubis, Sandro W.; Setiawan, Sonni

2018-05-01

Tropical weather system is controlled by periodic atmospheric disturbances ranging from daily to subseasonal time scales. One of the most prominent atmospheric disturbances in the tropics is convectively coupled equatorial waves (CCEWs). CCEWs are excited by latent heating due to a large-scale convective system and have a significant influence on weather system. They include atmospheric equatorial Kelvin wave, Mixed Rossby Gravity (MRG) wave, Equatorial Rossby (ER) wave and Tropical Depression (TD-type) wave. In this study, we will evaluate the seasonal variability of CCEWs activity in nine high-top CMIP5 models, including their spatial distribution in the troposphere. Our results indicate that seasonal variability of Kelvin waves is well represented in MPI-ESM-LR and MPI-ESM-MR, with maximum activity occurring during boreal spring. The seasonal variability of MRG waves is well represented in CanESM2, HadGEM2-CC, IPSL-CM5A-LR and IPSL-CM5A-MR, with maximum activity observed during boreal summer. On the other hand, ER waves are well captured by IPSL-CM5A-LR and IPSL-CM5A-MR and maximize during boreal fall; while TD-type waves, with maximum activity observed during boreal summer, are well observed in CanESM2, HadGEM2-CC, IPSL-CM5A-LR and IPSL-CM5A-MR. Our results indicate that the skill of CMIP5 models in representing seasonal variability of CCEWs highly depends on the convective parameterization and the spatial or vertical resolution used by each model.

Environmental impact analysis; the example of the proposed Trans-Alaska Pipeline

USGS Publications Warehouse

Brew, David A.

1974-01-01

The environmental impact analysis made as required by the National Environmental Policy Act of 1969 for the proposed trans-Alaska pipeline included consideration of the (1) technologically complex and geographically extensive proposed project, (2) extremely different physical environments across Alaska along the proposed route and elsewhere in Alaska and in Canada along alternative routes, (3) socioeconomic environment of the State of Alaska, and (4) a wide variety of alternatives. The analysis was designed specifically to fit the project and environment that would be affected. The environment was divided into two general parts--natural physical systems and superposed socioeconomic systems--and those parts were further divided into discipline-oriented systems or components that were studied and analyzed by scientists of the appropriate discipline. Particular attention was given to potential feedback loops in the impact network and to linkages between the project's impacting effects and the environment. The results of the analysis as reported in the final environmental impact statement were that both unavoidable and threatened environmental impacts would result from construction, operation, and maintenance of the proposed pipeline system and the developments related to it. The principal unavoidable effects would be (1) disturbances of terrain, fish and wildlife habitat, and human environs, (2) the results of the discharge of effluent from the tanker-ballast-treatment facility into Port Valdez and of some indeterminate amount of oil released into the ocean from tank-cleaning operations at sea, and (3) the results associated with increased human pressures of all kinds on the environment. Other unavoidable effects would be those related to increase of State and Native Corporation revenues, accelerated cultural change of the Native population, and extraction of the oil and gas resource. The main threatened environmental effects would all be related to unintentional oil loss from the pipeline, from tankers, or in the oil field. Oil losses from the pipeline could be caused by direct or indirect effects of earthquakes, destructive sea waves, slope failure caused by natural or artificial processes, thaw-plug instability (in permafrost), differential settlement of permafrost terrain, and bed scour and bank erosion at stream crossings. Oil loss from tankers could be caused by accidents during transfer operations at Valdez and at destination ports and by casualties involving tankers and other ships. Comparison of alternative routes and transportation systems and of their environmental impacts provided information which indicates to the author that one corridor containing both oil and gas pipelines would have less environmental impact than would separate corridors. Considering also the threat to the marine environment that any tanker system would impose and the threat that zones of high earthquake frequency and magnitude would impose on pipelines, it is apparent to the author that environmental impact and cost would be least for a single-corridor on-land route that avoided earthquake zones. The alternative trans-Alaska-Canada routes would meet these criteria. The decisions of the U.S. Department of the Interior, the U.S. Congress, and the President of the United States in favor of the proposed trans-Alaska pipeline system indicate the relative weight given by the decision makers in balancing the importance of potential environmental consequences against the advantages to be derived from rapid resource development.

Beyond the Binary: Serving the Transgender Student, Improving the College Experience

ERIC Educational Resources Information Center

Finger, Eleanor Ford

2010-01-01

This research study examines transgender (trans) identity, how it is manifested in trans students, the college and university experiences of these individuals, and how organizational systems hinder, enhance, expand, and redefine trans student success. This study provides a greater understanding of a population that is often misunderstood by fellow…

Probing the hammerhead ribozyme structure with ribonucleases.

PubMed Central

Hodgson, R A; Shirley, N J; Symons, R H

1994-01-01

Susceptibility to RNase digestion has been used to probe the conformation of the hammerhead ribozyme structure prepared from chemically synthesised RNAs. Less than about 1.5% of the total sample was digested to obtain a profile of RNase digestion sites. The observed digestion profiles confirmed the predicted base-paired secondary structure for the hammerhead. Digestion profiles of both cis and trans hammerhead structures were nearly identical which indicated that the structural interactions leading to self-cleavage were similar for both systems. Furthermore, the presence or absence of Mg2+ did not affect the RNase digestion profiles, thus indicating that Mg2+ did not modify the hammerhead structure significantly to induce self-cleavage. The base-paired stems I and II in the hammerhead structure were stable whereas stem III, which was susceptible to digestion, appeared to be an unstable region. The single strand domains separating the stems were susceptible to digestion with the exception of sites adjacent to guanosines; GL2.1 in the stem II loop and G12 in the conserved GAAAC sequence, which separates stems II and III. The absence of digestion at GL2.1 in the stem II hairpin loop of the hammerhead complex was maintained in uncomplexed ribozyme and in short oligonucleotides containing only the stem II hairpin region. In contrast, the G12 site became susceptible when the ribozyme was not complexed with its substrate. Overall the results are consistent with the role of Mg2+ in the hammerhead self-cleavage reaction being catalytic and not structural. Images PMID:8202361

Edgelist phase unwrapping algorithm for time series InSAR analysis.

PubMed

Shanker, A Piyush; Zebker, Howard

2010-03-01

We present here a new integer programming formulation for phase unwrapping of multidimensional data. Phase unwrapping is a key problem in many coherent imaging systems, including time series synthetic aperture radar interferometry (InSAR), with two spatial and one temporal data dimensions. The minimum cost flow (MCF) [IEEE Trans. Geosci. Remote Sens. 36, 813 (1998)] phase unwrapping algorithm describes a global cost minimization problem involving flow between phase residues computed over closed loops. Here we replace closed loops by reliable edges as the basic construct, thus leading to the name "edgelist." Our algorithm has several advantages over current methods-it simplifies the representation of multidimensional phase unwrapping, it incorporates data from external sources, such as GPS, where available to better constrain the unwrapped solution, and it treats regularly sampled or sparsely sampled data alike. It thus is particularly applicable to time series InSAR, where data are often irregularly spaced in time and individual interferograms can be corrupted with large decorrelated regions. We show that, similar to the MCF network problem, the edgelist formulation also exhibits total unimodularity, which enables us to solve the integer program problem by using efficient linear programming tools. We apply our method to a persistent scatterer-InSAR data set from the creeping section of the Central San Andreas Fault and find that the average creep rate of 22 mm/Yr is constant within 3 mm/Yr over 1992-2004 but varies systematically with ground location, with a slightly higher rate in 1992-1998 than in 1999-2003.

A low-order model of the equatorial ocean-atmosphere system

NASA Astrophysics Data System (ADS)

Legnani, Roberto

A low order model of the equatorial ocean-atmosphere coupled system is presented. The model atmosphere includes a hydrological cycle with cloud-radiation interaction. The model ocean is based on mixed layer dynamics with a parameterization of entrainment processes. The coupling takes place via transfer to momentum, sensible heat, latent heat and short wave and long wave radiation through the ocean surface. The dynamical formulation is that of the primitive equations of an equatorial beta-plane, with zonally periodic and meridionally infinite geometry. The system is expanded into the set of normal modes pertinent to the linear problem and severly truncated to a few modes; 54 degrees of freedom are retained. Some nonlinear terms of the equations are evaluated in physical space and then projected onto the functional space; other terms are evaluated directly in the functional space. Sensitivity tests to variations of the parameters are performed, and some results from 10-year initial value simulations are presented. The model is capable of supporting oscillations of different time scales, ranging from a few days to a few years; it prefers a particular zonally asymmetric state, but temporarily switches to a different (opposite) zonally asymmetric state in an event-like fashion.

a Low-Order Model of the Equatorial Ocean-Atmosphere System.

NASA Astrophysics Data System (ADS)

Legnani, Roberto

A low order model of the equatorial ocean-atmosphere coupled system is presented. The model atmosphere includes a hydrological cycle with cloud-radiation interaction. The model ocean is based on mixed layer dynamics with a parameterization of entrainment processes. The coupling takes place via transfer to momentum, sensible heat, latent heat and short -wave and long-wave radiation through the ocean surface. The dynamical formulation is that of the primitive equations of an equatorial beta-plane, with zonally periodic and meridionally infinite geometry. The system is expanded into the set of normal modes pertinent to the linear problem and severely truncated to a few modes; 54 degrees of freedom are retained. Some nonlinear terms of the equations are evaluated in physical space and then projected onto the functional space; other terms are evaluated directly in the functional space. Sensitivity tests to variations of the parameters are performed, and some results from 10-year initial value simulations are presented. The model is capable of supporting oscillations of different time scales, ranging from a few days to a few years; it prefers a particular zonally asymmetric state, but temporarily switches to a different (opposite) zonally asymmetric state in an event-like fashion.

Human life support during interplanetary travel and domicile. III - Mars expedition system trade study

NASA Technical Reports Server (NTRS)

Seshan, P. K.; Ferrall, Joseph F.; Rohatgi, Naresh K.

1991-01-01

Several alternative configurations of life-support systems (LSSs) for a Mars missions are compared analytically on a quantitative basis in terms of weight, volume, and power. A baseline technology set is utilized for the illustrations of systems including totally open loop, carbon dioxide removal only, partially closed loop, and totally closed loop. The analytical model takes advantage of a modular, top-down hierarchical breakdown of LSS subsystems into functional elements that represent individual processing technologies. The open-loop systems are not competitive in terms of weight for both long-duration orbiters and short-duration lander vehicles, and power demands are lowest with the open loop and highest with the closed loop. The closed-loop system can reduce vehicle weight by over 70,000 lbs and thereby overcome the power penalty of 1600 W; the closed-loop variety is championed as the preferred system for a Mars expedition.

Contact binaries in the Trans-neptunian Belt

NASA Astrophysics Data System (ADS)

Thirouin, Audrey; Sheppard, Scott S.

2017-10-01

A contact binary is made up of two objects that are almost touching or in contact with each other. These systems have been found in the Near-Earth Object population, the main belt of asteroids, the Jupiter Trojans, the comet population and even in the Trans-neptunian belt.Several studies suggest that up to 30% of the Trans-Neptunian Objects (TNOs) could be contact binaries (Sheppard & Jewitt 2004, Lacerda 2011). Contact binaries are not resolvable with the Hubble Space Telescope because of the small separation between the system's components (Noll et al. 2008). Only lightcurves with a characteristic V-/U-shape at the minimum/maximum of brightness and a large amplitude can identify these contact binaries. Despite an expected high fraction of contact binaries, 2001 QG298 is the only confirmed contact binary in the Trans-Neptunian belt, and 2003 SQ317 is a candidate to this class of systems (Sheppard & Jewitt 2004, Lacerda et al. 2014).Recently, using the Lowell’s 4.3m Discovery Channel Telescope and the 6.5m Magellan Telescope, we started a search for contact binaries at the edge of our Solar System. So far, our survey focused on about 40 objects in different dynamical groups of the Trans-Neptunian belt for sparse or complete lightcurves. We report the discovery of 5 new potential contact binaries converting the current estimate of potential/confirmed contact binaries to 7 objects. With one epoch of observations per object, we are not able to model in detail the systems, but we derive estimate for basic information such as shape, size, density of both objects as well as the separation between the system’s components. In this work, we will present these new systems, their basic characteristics, and we will discuss the potential main reservoir of contact binaries in the Trans-neptunian belt.

Correlations between conceptal concentrations of all-trans-retinoic acid and dysmorphogenesis after microinjections of all-trans-retinoic acid, 13-cis-retinoic acid, all-trans-retinoyl-beta-glucuronide, or retinol in cultured whole rat embryos.

PubMed

Kraft, J C; Juchau, M R

1992-01-01

Retinol (4,000 ng/ml), all-trans-retinoyl-beta-glucuronide (4,000 ng/ml), and 13-cis-retinoic acid (1,500 ng/ml) each produced dysmorphogenic effects qualitatively similar to those elicited by 250 ng/ml of all-trans-retinoic acid after microinjections of the respective individual retinoids into the amniotic cavities of cultured whole rat embryos. Subsequent HPLC analyses of the cultured whole conceptuses, embryos proper, yolk sacs, and culture media (24 hr after microinjections) indicated that conceptal biotransformation of each of the retinoids had occurred during the culture period. All-trans-retinoic acid was present in the embryos proper at quantitatively similar concentrations (20-100 nM) after microinjections of the selected quantities of each of the microinjected retinoids: retinol, all-trans-retinoyl-beta-glucuronide, 13-cis-retinoic acid, or all-trans-retinoic acid. The results suggested that all-trans-retinoic acid acted as an ultimate dysmorphogen for the retinoids tested with respect to the anomalies monitored in the embryo culture system.

Assessment and comparison of in vitro immunoregulatory activity of three astaxanthin stereoisomers

NASA Astrophysics Data System (ADS)

Sun, Weihong; Xing, Lihong; Lin, Hong; Leng, Kailiang; Zhai, Yuxiu; Liu, Xiaofang

2016-04-01

In recent years, the immune-modulatory role of all- trans astaxanthin from different pigment sources has been studied. It was reported that all- trans astaxanthin might exist as three stereoisomers, and the composition of all- trans stereoisomers in natural materials differs from that of synthetic products. However, the different biological effects of various all- trans stereoisomers still remain unclear. In the present study, we evaluated the bioactivity of three astaxanthin stereoisomers, ( 3S, 3'S)- trans-, ( 3R,3'R)- trans-and meso-trans-astaxanthin, in regulating cell-mediated immune response using mice lymphocytes and peritoneal exudates cells (PECs) systems. After the treatment with three astaxanthin stereoisomers (20 μmol L-1), the lymphocyte proliferation capacity, neutral red phagocytosis of PECs and natural killer (NK) cell cytotoxic activity were comparatively assessed. The results showed that all three astaxanthin stereoisomers significantly promoted lymphocyte proliferation, phagocytic capacity of PECs, and cytotoxic activity of NK cells. Moreover, the ( 3S,3'S)-trans-astaxanthin exhibited a much higher response than others.

Selected classes of minimised hammerhead ribozyme have very high cleavage rates at low Mg2+ concentration.

PubMed Central

Conaty, J; Hendry, P; Lockett, T

1999-01-01

In vitro selection was used to enrich for highly efficient RNA phosphodiesterases within a size-constrained (18 nt) ribonucleotide domain. The starting population (g0) was directed in trans against an RNA oligonucleotide substrate immobilised to an avidin-magnetic phase. Four rounds of selection were conducted using 20 mM Mg2+to fractionate the population on the basis of divalent metal ion-dependent phosphodiesterase activity. The resulting generation 4 (g4) RNA was then directed through a further two rounds of selection using low concentrations of Mg2+. Generation 6 (g6) was composed of sets of active, trans cleaving minimised ribozymes, containing recognised hammerhead motifs in the conserved nucleotides, but with highly variable linker domains (loop II-L.1-L.4). Cleavage rate constants in the g6 population ranged from 0.004 to 1.3 min-1at 1 mM Mg2+(pH 8.0, 37 degrees C). Selection was further used to define conserved positions between G(10.1) and C(11.1) required for high cleavage activity at low Mg2+concentration. At 10 mM MgCl2the kinetic phenotype of these molecules was comparable to a hammerhead ribozyme with 4 bp in helix II. At low Mg2+concentration, the disparity in cleavage rate constants increases in favour of the minimised ribozymes. Favourable kinetic traits appeared to be a general property for specific selected linker sequences, as the high rates of catalysis were transferable to a different substrate system. PMID:10325431

High-throughput sequence analysis of Ciona intestinalis SL trans-spliced mRNAs: alternative expression modes and gene function correlates.

PubMed

Matsumoto, Jun; Dewar, Ken; Wasserscheid, Jessica; Wiley, Graham B; Macmil, Simone L; Roe, Bruce A; Zeller, Robert W; Satou, Yutaka; Hastings, Kenneth E M

2010-05-01

Pre-mRNA 5' spliced-leader (SL) trans-splicing occurs in some metazoan groups but not in others. Genome-wide characterization of the trans-spliced mRNA subpopulation has not yet been reported for any metazoan. We carried out a high-throughput analysis of the SL trans-spliced mRNA population of the ascidian tunicate Ciona intestinalis by 454 Life Sciences (Roche) pyrosequencing of SL-PCR-amplified random-primed reverse transcripts of tailbud embryo RNA. We obtained approximately 250,000 high-quality reads corresponding to 8790 genes, approximately 58% of the Ciona total gene number. The great depth of this data revealed new aspects of trans-splicing, including the existence of a significant class of "infrequently trans-spliced" genes, accounting for approximately 28% of represented genes, that generate largely non-trans-spliced mRNAs, but also produce trans-spliced mRNAs, in part through alternative promoter use. Thus, the conventional qualitative dichotomy of trans-spliced versus non-trans-spliced genes should be supplanted by a more accurate quantitative view recognizing frequently and infrequently trans-spliced gene categories. Our data include reads representing approximately 80% of Ciona frequently trans-spliced genes. Our analysis also revealed significant use of closely spaced alternative trans-splice acceptor sites which further underscores the mechanistic similarity of cis- and trans-splicing and indicates that the prevalence of +/-3-nt alternative splicing events at tandem acceptor sites, NAGNAG, is driven by spliceosomal mechanisms, and not nonsense-mediated decay, or selection at the protein level. The breadth of gene representation data enabled us to find new correlations between trans-splicing status and gene function, namely the overrepresentation in the frequently trans-spliced gene class of genes associated with plasma/endomembrane system, Ca(2+) homeostasis, and actin cytoskeleton.

CryoTran user's manual, version 1.0

NASA Technical Reports Server (NTRS)

Cowgill, Glenn R.; Chato, David J.; Saad, Ehab

1989-01-01

The development of cryogenic fluid management systems for space operation is a major portion of the efforts of the Cryogenic Fluids Technology Office (CFTO) at the NASA Lewis Research Center. Analytical models are a necessary part of experimental programs which are used to verify the results of experiments and are also used as a predictor for parametric studies. The CryoTran computer program is a bridge to obtain analytical results. The object of CryoTran is to coordinate these separate analyses into an integrated framework with a user-friendly interface and a common cryogenic property database. CryoTran is an integrated software system designed to help solve a diverse set of problems involving cryogenic fluid storage and transfer in both ground and low-g environments.

The role of boundary layer momentum advection in the mean location of the ITCZ

NASA Astrophysics Data System (ADS)

Dixit, Vishal; Srinivasan, J.

2017-08-01

The inter-tropical convergence zones (ITCZ) form closer to the equator during equinoxes while they form well away from the equator during the boreal summer. A simple three-way balance between the pressure gradients, Coriolis force and effective Rayleigh friction has been classically used to diagnose the location of maximum boundary layer convergence in the near equatorial ITCZ. If such a balance can capture the dynamics of off-equatorial convergence was not known. We used idealized aqua planet simulations with fixed, zonally symmetric sea surface temperature boundary conditions to simulate the near equatorial and off-equatorial ITCZ. As opposed to the convergence of inter-hemispheric flows in the near equatorial convergence, the off-equatorial convergence forms due to the deceleration of cross-equatorial meridional flow. The detailed momentum budget of the off-equatorial convergence zone reveals that the simple balance is not sufficient to capture the relevant dynamics. The deceleration of the meridional flow is strongly modulated by the inertial effects due to the meridional advection of zonal momentum in addition to the terms in the simple balance. The simple balance predicts a spurious near equatorial convergence and a consistent off-equatorial convergence of the meridional flow. The spurious convergence disappears when inertial effects are included in the balance. As cross equatorial meridional flow decelerates to form convergence, the inertial effects cancel the pressure gradient effects near the equator while they add away from the equator. The contribution to the off-equatorial convergence induced by the pressure gradients is significantly larger than the contribution due to the inertial effects and hence pressure gradients appear to be the primary factor in anchoring the strength and location of the off-equatorial convergence.

Multiple Flow Loop SCADA System Implemented on the Production Prototype Loop

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baily, Scott A.; Dalmas, Dale Allen; Wheat, Robert Mitchell

2015-11-16

The following report covers FY 15 activities to develop supervisory control and data acquisition (SCADA) system for the Northstar Moly99 production prototype gas flow loop. The goal of this effort is to expand the existing system to include a second flow loop with a larger production-sized blower. Besides testing the larger blower, this system will demonstrate the scalability of our solution to multiple flow loops.

Mapping sensory circuits by anterograde trans-synaptic transfer of recombinant rabies virus

PubMed Central

Zampieri, Niccolò; Jessell, Thomas M.; Murray, Andrew J.

2014-01-01

Summary Primary sensory neurons convey information from the external world to relay circuits within the central nervous system (CNS), but the identity and organization of the neurons that process incoming sensory information remains sketchy. Within the CNS viral tracing techniques that rely on retrograde trans-synaptic transfer provide a powerful tool for delineating circuit organization. Viral tracing of the circuits engaged by primary sensory neurons has, however, been hampered by the absence of a genetically tractable anterograde transfer system. In this study we demonstrate that rabies virus can infect sensory neurons in the somatosensory system, is subject to anterograde trans-synaptic transfer from primary sensory to spinal target neurons, and can delineate output connectivity with third-order neurons. Anterograde trans-synaptic transfer is a feature shared by other classes of primary sensory neurons, permitting the identification and potentially the manipulation of neural circuits processing sensory feedback within the mammalian CNS. PMID:24486087

Quantification of arrestin-rhodopsin binding stoichiometry.

PubMed

Lally, Ciara C M; Sommer, Martha E

2015-01-01

We have developed several methods to quantify arrestin-1 binding to rhodopsin in the native rod disk membrane. These methods can be applied to study arrestin interactions with all functional forms of rhodopsin, including dark-state rhodopsin, light-activated metarhodopsin II (Meta II), and the products of Meta II decay, opsin and all-trans-retinal. When used in parallel, these methods report both the actual amount of arrestin bound to the membrane surface and the functional aspects of arrestin binding, such as which arrestin loops are engaged and whether Meta II is stabilized. Most of these methods can also be applied to recombinant receptor reconstituted into liposomes, bicelles, and nanodisks.

“Completely out-at-sea” with “two-gender medicine”: A qualitative analysis of physician-side barriers to providing healthcare for transgender patients

PubMed Central

2012-01-01

Background Members of the transgender community have identified healthcare access barriers, yet a corresponding inquiry into healthcare provider perspectives has lagged. Our aim was to examine physician perceptions of barriers to healthcare provision for transgender patients. Methods This was a qualitative study with physician participants from Ontario, Canada. Semi-structured interviews were used to capture a progression of ideas related to barriers faced by physicians when caring for trans patients. Qualitative data were then transcribed verbatim and analysed with an emergent grounded theory approach. Results A total of thirteen (13) physician participants were interviewed. Analysis revealed healthcare barriers that grouped into five themes: Accessing resources, medical knowledge deficits, ethics of transition-related medical care, diagnosing vs. pathologising trans patients, and health system determinants. A centralising theme of “not knowing where to go or who to talk to” was also identified. Conclusions The findings of this study show that physicians perceive barriers to the care of trans patients, and that these barriers are multifactorial. Access barriers impede physicians when referring patients to specialists or searching for reliable treatment information. Clinical management of trans patients is complicated by a lack of knowledge, and by ethical considerations regarding treatments—which can be unfamiliar or challenging to physicians. The disciplinary division of responsibilities within medicine further complicates care; few practitioners identify trans healthcare as an interest area, and there is a tendency to overemphasise trans status in mental health evaluations. Failure to recognise and accommodate trans patients within sex-segregated healthcare systems leads to deficient health policy. The findings of this study suggest potential solutions to trans healthcare barriers at the informational level—with increased awareness of clinical guidelines and by including trans health issues in medical education—and at the institutional level, with support for both trans-focused and trans-friendly primary care models. PMID:22559234

"Completely out-at-sea" with "two-gender medicine": a qualitative analysis of physician-side barriers to providing healthcare for transgender patients.

PubMed

Snelgrove, John W; Jasudavisius, Amanda M; Rowe, Bradley W; Head, Evan M; Bauer, Greta R

2012-05-04

Members of the transgender community have identified healthcare access barriers, yet a corresponding inquiry into healthcare provider perspectives has lagged. Our aim was to examine physician perceptions of barriers to healthcare provision for transgender patients. This was a qualitative study with physician participants from Ontario, Canada. Semi-structured interviews were used to capture a progression of ideas related to barriers faced by physicians when caring for trans patients. Qualitative data were then transcribed verbatim and analysed with an emergent grounded theory approach. A total of thirteen (13) physician participants were interviewed. Analysis revealed healthcare barriers that grouped into five themes: Accessing resources, medical knowledge deficits, ethics of transition-related medical care, diagnosing vs. pathologising trans patients, and health system determinants. A centralising theme of "not knowing where to go or who to talk to" was also identified. The findings of this study show that physicians perceive barriers to the care of trans patients, and that these barriers are multifactorial. Access barriers impede physicians when referring patients to specialists or searching for reliable treatment information. Clinical management of trans patients is complicated by a lack of knowledge, and by ethical considerations regarding treatments--which can be unfamiliar or challenging to physicians. The disciplinary division of responsibilities within medicine further complicates care; few practitioners identify trans healthcare as an interest area, and there is a tendency to overemphasise trans status in mental health evaluations. Failure to recognise and accommodate trans patients within sex-segregated healthcare systems leads to deficient health policy. The findings of this study suggest potential solutions to trans healthcare barriers at the informational level--with increased awareness of clinical guidelines and by including trans health issues in medical education-and at the institutional level, with support for both trans-focused and trans-friendly primary care models.

Changes in opal flux and the rain ratio during the last 50,000 years in the equatorial Pacific

NASA Astrophysics Data System (ADS)

Richaud, Mathieu; Loubere, Paul; Pichat, Sylvain; Francois, Roger

2007-03-01

Changes in the orgC/CaCO 3 ratio in particles sinking from the surface to the deep ocean have the potential to alter the atmospheric pCO 2 over the span of a glacial/interglacial cycle. Recent paleoceanographic and modern observational studies suggest that silica is a key factor in the global carbon biogeochemical cycle that can influence the flux ratio, especially at low latitudes, through "silicic acid leakage" [Brzezinski, M., Pride, C., Franck, M., Sigman, D., Sarmiento, J., Matsumoto, K., Gruber, N., Rau, R., Coale, K., 2002. A switch from Si(OH) 4 to NO3- depletion in the glacial Southern Ocean. Geophysical Research Letters 29, 5]. To test this hypothesis, we reconstruct biogenic fluxes of CaCO 3, orgC and Si for three equatorial Pacific cores. We find evidence that a floral shift from a SiO 2-based community to a CaCO 3-based occurred, starting in mid-marine isotope stage (MIS) 3 (24-59 cal. ka) and declining toward MIS 2 (19-24 cal. ka). This could reflect the connection of the Peru upwelling system to the subantarctic region, and we postulate that excess silica was transported from the subantarctic via the deep Equatorial Undercurrent to the eastern equatorial Pacific. In the eastern equatorial Pacific only, we document a significant decrease in rain ratio starting mid-MIS 3 toward MIS 2. This decrease is concomitant with a significant decrease in silica accumulation rates at the seabed. This pattern is not observed in the Pacific influenced by equatorial divergence and shallow upwelling, where all reconstructed fluxes (CaCO 3, orgC, and opal) increase during MIS 2. We conclude that the overall calcium carbonate pump weakened in the EEP under Peru upwelling influence.

Improved dual-loop detection system for collecting real-time truck data

DOT National Transportation Integrated Search

2005-02-01

The WSDOTs dual-loop detectors capability of measuring vehicle lengths makes the dual-loop detection system a potential real-time truck data source for freight movement study. However, a previous study found the WSDOT dual-loop detection system...

Magnetospheric disturbance effects on the Equatorial Ionization Anomaly (EIA) : an overview

NASA Astrophysics Data System (ADS)

Abdu, M. A.; Sobral, J. H. A.; de Paula, E. R.; Batista, I. S.

1992-12-01

The Equatorial lonization Anomaly (EIA) development can undergo drastic modification in the form of an anomalous occurrence at local times outside that of its quiet time development and/or inhibition/enhancement at local times of its normal occurrences. This happens for disturbed electrodynamic conditions of the global ionosphere-thermosphere-magnetosphere system, consequent upon the triggering of a magnetospheric storm event. Direct penetration to equatorial latitudes of the magnetospheric electric fields and the thermospheric disturbances involving winds, electric fields and composition changes produce significant alteration in the EIA morphology and dynamics. Results on statistical behaviour based on accumulated ground-based data sets, and those from recent theoretical modelling efforts and from satellite and ground-based observations, are reviewed. Some outstanding problems of the EIA response to magnetospheric disturbances that deserve attention in the coming years are pointed out.

Line formation in winds with enhanced equatorial mass-loss rates and its application to the Wolf-Rayet star HD 50896

NASA Technical Reports Server (NTRS)

Rumpl, W. M.

1980-01-01

A model having a spherically symmetric velocity distribution with a higher density at the equatorial region was developed to simulate the UV spectrum of the Wolf-Rayet star HD 50896. The spectrum showed P Cygni-shaped profiles whose emissions are stronger than expected in a spherically symmetric stellar wind. The model was studied varying the inclination angle of the star-wind system and the polar to equatorial density ratios; it was shown that HD 50896 could possess a nonspherically symmetric wind and that its symmetry axis is inclined between 60 and 90 deg. It is possible that the velocity distribution of the wind could include an inner constant velocity plateau beyond which the wind accelerates to its terminal velocity as indicated by infrared continuum investigations.

Meteoritic Evidence for Injection of Trans-Neptunian Objects into the Inner Solar System

NASA Technical Reports Server (NTRS)

Zolensky, M.; Johnson, J.; Ziegler, K.; Chan, Q.; Kebukawa, Y.; Bottke, W.; Fries, M.; Martinez, J.; Le, L.

2018-01-01

There is excellent evidence that a dynamical instability in the early solar system led to gravitational interactions between the giant planets and trans-Neptunian planetesimals. Giant planetary migration triggered by the instability dispersed a disk of primordial trans-Neptunian object (TNOs) and created a number of small body reservoirs (e.g. the Kuiper Belt, scattered disk, irregular satellites, and the Jupiter/Neptune Trojan populations). It also injected numerous bodies into the main asteroid belt, where modeling shows they can successfully reproduce the observed P and D-type asteroid populations.

Collective acceleration of ions in a system with an insulated anode

NASA Astrophysics Data System (ADS)

Bystritskii, V. M.; Didenko, A. N.; Krasik, Ya. E.; Lopatin, V. S.; Podkatov, V. I.

1980-11-01

An investigation was made of the processes of collective acceleration of protons in vacuum in a system with an insulated anode and trans-anode electrodes, which were insulated or grounded, in high-current Tonus and Vera electron accelerators. The influence of external conditions and parameters of the electron beam on the efficiency of acceleration processes was investigated. Experiments were carried out in which protons were accelerated in a system with trans-anode electrodes. A study was made of the influence of a charge prepulse and of the number of trans-anode electrodes on the energy of the accelerated electrons. A system with a single anode produced Np=1014 protons of 2Ee < Ep < 3Ee energy. Suppression of a charge prepulse increased the proton energy to (6 8)Ee and the yield was then 1013. The maximum proton energy of 14Ee was obtained in a system with three trans-anode electrodes. A possible mechanism of proton acceleration was analyzed. The results obtained were compared with those of other investigations. Ways of increasing the efficiency of this acceleration method were considered.

Control and optimization system and method for chemical looping processes

DOEpatents

Lou, Xinsheng; Joshi, Abhinaya; Lei, Hao

2014-06-24

A control system for optimizing a chemical loop system includes one or more sensors for measuring one or more parameters in a chemical loop. The sensors are disposed on or in a conduit positioned in the chemical loop. The sensors generate one or more data signals representative of an amount of solids in the conduit. The control system includes a data acquisition system in communication with the sensors and a controller in communication with the data acquisition system. The data acquisition system receives the data signals and the controller generates the control signals. The controller is in communication with one or more valves positioned in the chemical loop. The valves are configured to regulate a flow of the solids through the chemical loop.

Control and optimization system and method for chemical looping processes

DOEpatents

Lou, Xinsheng; Joshi, Abhinaya; Lei, Hao

2015-02-17

A control system for optimizing a chemical loop system includes one or more sensors for measuring one or more parameters in a chemical loop. The sensors are disposed on or in a conduit positioned in the chemical loop. The sensors generate one or more data signals representative of an amount of solids in the conduit. The control system includes a data acquisition system in communication with the sensors and a controller in communication with the data acquisition system. The data acquisition system receives the data signals and the controller generates the control signals. The controller is in communication with one or more valves positioned in the chemical loop. The valves are configured to regulate a flow of the solids through the chemical loop.

Crystal structure of trans-di­fluoridotetra­kis(pyridine-κN)chromium(III) tri­chlorido­(pyridine-κN)zincate monohydrate from synchrotron data

PubMed Central

Moon, Dohyun; Choi, Jong-Ha

2014-01-01

In the asymmetric unit of the title compound, [CrF2(C5H5N)4][ZnCl3(C5H5N)]·H2O, there are two independent complex cations, one tri­chlorido­(pyridine-κN)zincate anion and one solvent water mol­ecule. The cations lie on inversion centers. The CrIII ions are coordinated by four pyridine (py) N atoms in the equatorial plane and two F atoms in a trans axial arrangement, displaying a slightly distorted octa­hedral geometry. The Cr—N(py) bond lengths are in the range 2.0873 (14) to 2.0926 (17) Å while the Cr—F bond lengths are 1.8609 (10) and 1.8645 (10) Å. The [ZnCl3(C5H5N)]− anion has a distorted tetra­hedral geometry. The Cl atoms of the anion were refined as disordered over two sets of sites in a 0.631 (9):0.369 (9) ratio. In the crystal, two anions and two water mol­ecules are linked via O—H⋯Cl hydrogen bonds, forming centrosymmetric aggregates. In addition, weak C—H⋯Cl, C—H⋯π and π–π stacking inter­actions [centroid–centroid distances = 3.712 (2) and 3.780 (2)Å] link the components of the structure into a three-dimensional network. PMID:25484725

Searching for ancient balanced polymorphisms shared between Neanderthals and Modern Humans

PubMed Central

Viscardi, Lucas Henriques; Paixão-Côrtes, Vanessa Rodrigues; Comas, David; Salzano, Francisco Mauro; Rovaris, Diego; Bau, Claiton Dotto; Amorim, Carlos Eduardo G.; Bortolini, Maria Cátira

2018-01-01

Abstract Hominin evolution is characterized by adaptive solutions often rooted in behavioral and cognitive changes. If balancing selection had an important and long-lasting impact on the evolution of these traits, it can be hypothesized that genes associated with them should carry an excess of shared polymorphisms (trans- SNPs) across recent Homo species. In this study, we investigate the role of balancing selection in human evolution using available exomes from modern (Homo sapiens) and archaic humans (H. neanderthalensis and Denisovan) for an excess of trans-SNP in two gene sets: one associated with the immune system (IMMS) and another one with behavioral system (BEHS). We identified a significant excess of trans-SNPs in IMMS (N=547), of which six of these located within genes previously associated with schizophrenia. No excess of trans-SNPs was found in BEHS, but five genes in this system harbor potential signals for balancing selection and are associated with psychiatric or neurodevelopmental disorders. Our approach evidenced recent Homo trans-SNPs that have been previously implicated in psychiatric diseases such as schizophrenia, suggesting that a genetic repertoire common to the immune and behavioral systems could have been maintained by balancing selection starting before the split between archaic and modern humans. PMID:29658973

Closed-Loop Control Better than Open-Loop Control of Profofol TCI Guided by BIS: A Randomized, Controlled, Multicenter Clinical Trial to Evaluate the CONCERT-CL Closed-Loop System

PubMed Central

Zhang, Xuena; Wu, Anshi; Yao, Shanglong; Xue, Zhanggang; Yue, Yun

2015-01-01

Background The CONCERT-CL closed-loop infusion system designed by VERYARK Technology Co., Ltd. (Guangxi, China) is an innovation using TCI combined with closed-loop controlled intravenous anesthesia under the guide of BIS. In this study we performed a randomized, controlled, multicenter study to compare closed-loop control and open-loop control of propofol by using the CONCERT-CL closed-loop infusion system. Methods 180 surgical patients from three medical centers undergone TCI intravenous anesthesia with propofol and remifentanil were randomly assigned to propofol closed-loop group and propofol opened-loop groups. Primary outcome was global score (GS, GS = (MDAPE+Wobble)/% of time of bispectral index (BIS) 40-60). Secondary outcomes were doses of the anesthetics and emergence time from anesthesia, such as, time to tracheal extubation. Results There were 89 and 86 patients in the closed-loop and opened-loop groups, respectively. GS in the closed-loop groups (22.21±8.50) were lower than that in the opened-loop group (27.19±15.26) (p=0.009). The higher proportion of time of BIS between 40 and 60 was also observed in the closed-loop group (84.11±9.50%), while that was 79.92±13.17% in the opened-loop group, (p=0.016). No significant differences in propofol dose and time of tracheal extubation were observed. The frequency of propofol regulation in the closed-loop group (31.55±9.46 times/hr) was obverse higher than that in the opened-loop group (6.84±6.21 times/hr) (p=0.000). Conclusion The CONCERT-CL closed-loop infusion system can automatically regulate the TCI of propofol, maintain the BIS value in an adequate range and reduce the workload of anesthesiologists better than open-loop system. Trial Registration ChiCTR ChiCTR-OOR-14005551 PMID:25886041

Transsynaptic Mapping of Second-Order Taste Neurons in Flies by trans-Tango.

PubMed

Talay, Mustafa; Richman, Ethan B; Snell, Nathaniel J; Hartmann, Griffin G; Fisher, John D; Sorkaç, Altar; Santoyo, Juan F; Chou-Freed, Cambria; Nair, Nived; Johnson, Mark; Szymanski, John R; Barnea, Gilad

2017-11-15

Mapping neural circuits across defined synapses is essential for understanding brain function. Here we describe trans-Tango, a technique for anterograde transsynaptic circuit tracing and manipulation. At the core of trans-Tango is a synthetic signaling pathway that is introduced into all neurons in the animal. This pathway converts receptor activation at the cell surface into reporter expression through site-specific proteolysis. Specific labeling is achieved by presenting a tethered ligand at the synapses of genetically defined neurons, thereby activating the pathway in their postsynaptic partners and providing genetic access to these neurons. We first validated trans-Tango in the Drosophila olfactory system and then implemented it in the gustatory system, where projections beyond the first-order receptor neurons are not fully characterized. We identified putative second-order neurons within the sweet circuit that include projection neurons targeting known neuromodulation centers in the brain. These experiments establish trans-Tango as a flexible platform for transsynaptic circuit analysis. Copyright © 2017 Elsevier Inc. All rights reserved.

Genetic Selection of Peptide Aptamers That Interact and Inhibit Both Small Protein B and Alternative Ribosome-Rescue Factor A of Aeromonas veronii C4.

PubMed

Liu, Peng; Chen, Yong; Wang, Dan; Tang, Yanqiong; Tang, Hongqian; Song, Haichao; Sun, Qun; Zhang, Yueling; Liu, Zhu

2016-01-01

Aeromonas veronii is a pathogenic gram-negative bacterium, which infects a variety of animals and results in mass mortality. The stalled-ribosome rescues are reported to ensure viability and virulence under stress conditions, of which primarily include trans-translation and alternative ribosome-rescue factor A (ArfA) in A. veronii. For identification of specific peptides that interact and inhibit the stalled-ribosome rescues, peptide aptamer library (pTRG-SN-peptides) was constructed using pTRG as vector and Staphylococcus aureus nuclease (SN) as scaffold protein, in which 16 random amino acids were introduced to form an exposed surface loop. In the meantime both Small Protein B (SmpB) which acts as one of the key components in trans-translation, and ArfA were inserted to pBT to constitute pBT-SmpB and pBT-ArfA, respectively. The peptide aptamer PA-2 was selected from pTRG-SN-peptides by bacterial two-hybrid system (B2H) employing pBT-SmpB or pBT-ArfA as baits. The conserved sites G133K134 and D138K139R140 of C-terminal SmpB were identified by interacting with N-terminal SN, and concurrently the residue K62 of ArfA was recognized by interacting with the surface loop of the specific peptide aptamer PA-2. The expression plasmids pN-SN or pN-PA-2, which combined the duplication origin of pRE112 with the neokanamycin promoter expressing SN or PA-2, were created and transformed into A. veronii C4, separately. The engineered A. veronii C4 which endowing SN or PA-2 expression impaired growth capabilities under stress conditions including temperatures, sucrose, glucose, potassium chloride (KCl) and antibiotics, and the stress-related genes rpoS and nhaP were down-regulated significantly by Quantitative Real-time PCR (qRT-PCR) when treating in 2.0% KCl. Thus, the engineered A. veronii C4 conferring PA-2 expression might be potentially attenuated vaccine, and also the peptide aptamer PA-2 could develop as anti-microbial drugs targeted to the ribosome rescued factors in A. veronii.

Genetic Selection of Peptide Aptamers That Interact and Inhibit Both Small Protein B and Alternative Ribosome-Rescue Factor A of Aeromonas veronii C4

PubMed Central

Liu, Peng; Chen, Yong; Wang, Dan; Tang, Yanqiong; Tang, Hongqian; Song, Haichao; Sun, Qun; Zhang, Yueling; Liu, Zhu

2016-01-01

Aeromonas veronii is a pathogenic gram-negative bacterium, which infects a variety of animals and results in mass mortality. The stalled-ribosome rescues are reported to ensure viability and virulence under stress conditions, of which primarily include trans-translation and alternative ribosome-rescue factor A (ArfA) in A. veronii. For identification of specific peptides that interact and inhibit the stalled-ribosome rescues, peptide aptamer library (pTRG-SN-peptides) was constructed using pTRG as vector and Staphylococcus aureus nuclease (SN) as scaffold protein, in which 16 random amino acids were introduced to form an exposed surface loop. In the meantime both Small Protein B (SmpB) which acts as one of the key components in trans-translation, and ArfA were inserted to pBT to constitute pBT-SmpB and pBT-ArfA, respectively. The peptide aptamer PA-2 was selected from pTRG-SN-peptides by bacterial two-hybrid system (B2H) employing pBT-SmpB or pBT-ArfA as baits. The conserved sites G133K134 and D138K139R140 of C-terminal SmpB were identified by interacting with N-terminal SN, and concurrently the residue K62 of ArfA was recognized by interacting with the surface loop of the specific peptide aptamer PA-2. The expression plasmids pN-SN or pN-PA-2, which combined the duplication origin of pRE112 with the neokanamycin promoter expressing SN or PA-2, were created and transformed into A. veronii C4, separately. The engineered A. veronii C4 which endowing SN or PA-2 expression impaired growth capabilities under stress conditions including temperatures, sucrose, glucose, potassium chloride (KCl) and antibiotics, and the stress-related genes rpoS and nhaP were down-regulated significantly by Quantitative Real-time PCR (qRT-PCR) when treating in 2.0% KCl. Thus, the engineered A. veronii C4 conferring PA-2 expression might be potentially attenuated vaccine, and also the peptide aptamer PA-2 could develop as anti-microbial drugs targeted to the ribosome rescued factors in A. veronii. PMID:27588015

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hung, Ching Pui; Jouve, Laurène; Brun, Allan Sacha

We show how magnetic observations of the Sun can be used in conjunction with an axisymmetric flux-transport solar dynamo model in order to estimate the large-scale meridional circulation throughout the convection zone. Our innovative approach rests on variational data assimilation, whereby the distance between predictions and observations (measured by an objective function) is iteratively minimized by means of an optimization algorithm seeking the meridional flow that best accounts for the data. The minimization is performed using a quasi-Newton technique, which requires knowledge of the sensitivity of the objective function to the meridional flow. That sensitivity is efficiently computed via themore » integration of the adjoint flux-transport dynamo model. Closed-loop (also known as twin) experiments using synthetic data demonstrate the validity and accuracy of this technique for a variety of meridional flow configurations, ranging from unicellular and equatorially symmetric to multicellular and equatorially asymmetric. In this well-controlled synthetic context, we perform a systematic study of the behavior of our variational approach under different observational configurations by varying their spatial density, temporal density, and noise level, as well as the width of the assimilation window. We find that the method is remarkably robust, leading in most cases to a recovery of the true meridional flow to within better than 1%. These encouraging results are a first step toward using this technique to (i) better constrain the physical processes occurring inside the Sun and (ii) better predict solar activity on decadal timescales.« less

Oxidation of Cyclohexene to "trans"-1,2-Cyclohexanediol Promoted by "p"-Toluenesulfonic Acid without Organic Solvents

ERIC Educational Resources Information Center

Rosatella, Andreia A.; Afonso, Carlos A. M.; Branco, Lus C.

2011-01-01

This experiment describes a method for cyclohexene oxidation to "trans"-1,2-cyclohexanediol using "p"-toluenesulfonic acid ("p"-TsOH) as promoter and hydrogen peroxide as oxidant in a biphasic system. This method allows conversions up to 97.9% (monitored by [superscript 1]H NMR). "trans"-1,2-Cyclohexanediol was not easily separated from the…

MACSAT - A Near Equatorial Earth Observation Mission

NASA Astrophysics Data System (ADS)

Kim, B. J.; Park, S.; Kim, E.-E.; Park, W.; Chang, H.; Seon, J.

MACSAT mission was initiated by Malaysia to launch a high-resolution remote sensing satellite into Near Equatorial Orbit (NEO). Due to its geographical location, Malaysia can have large benefits from NEO satellite operation. From the baseline circular orbit of 685 km altitude with 7 degrees of inclination, the neighboring regions around Malaysian territory can be frequently monitored. The equatorial environment around the globe can also be regularly observed with unique revisit characteristics. The primary mission objective of MACSAT program is to develop and validate technologies for a near equatorial orbit remote sensing satellite system. MACSAT is optimally designed to accommodate an electro-optic Earth observation payload, Medium-sized Aperture Camera (MAC). Malaysian and Korean joint engineering teams are formed for the effective implementation of the satellite system. An integrated team approach is adopted for the joint development for MACSAT. MAC is a pushbroom type camera with 2.5 m of Ground Sampling Distance (GSD) in panchromatic band and 5 m of GSD in four multi-spectral bands. The satellite platform is a mini-class satellite. Including MAC payload, the satellite weighs under 200 kg. Spacecraft bus is designed optimally to support payload operations during 3 years of mission life. The payload has 20 km of swath width with +/- 30 o of tilting capability. 32 Gbits of solid state recorder is implemented as the mass image storage. The ground element is an integrated ground station for mission control and payload operation. It is equipped with S- band up/down link for commanding and telemetry reception as well as 30 Mbps class X-band down link for image reception and processing. The MACSAT system is capable of generating 1:25,000-scale image maps. It is also anticipated to have capability for cross-track stereo imaging for Digital elevation Model (DEM) generation.

Hardware in the Loop at Megawatt-Scale Power | Energy Systems Integration

Science.gov Websites

Facility | NREL Hardware in the Loop at Megawatt-Scale Power Hardware in the Loop at Megawatt -Scale Power Hardware-in-the-loop simulation is not new, but the Energy System Integration Facility's -in-the-loop co-simulation. For more information, read the power hardware-in-the-loop factsheet. Text

Electromagnetic Analysis of ITER Diagnostic Equatorial Port Plugs During Plasma Disruptions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Y. Zhai, R. Feder, A. Brooks, M. Ulrickson, C.S. Pitcher and G.D. Loesser

2012-08-27

ITER diagnostic port plugs perform many functionsincluding structural support of diagnostic systems under high electromagnetic loads while allowing for diagnostic access to the plasma. The design of diagnostic equatorial port plugs (EPP) are largely driven by electromagnetic loads and associate responses of EPP structure during plasma disruptions and VDEs. This paper summarizes results of transient electromagnetic analysis using Opera 3d in support of the design activities for ITER diagnostic EPP. A complete distribution of disruption loads on the Diagnostic First Walls (DFWs), Diagnostic Shield Modules (DSMs) and the EPP structure, as well as impact on the system design integration duemore » to electrical contact among various EPP structural components are discussed.« less

The cast imaging of the osteon lacunar-canalicular system and the implications with functional models of intracanalicular flow.

PubMed

Pazzaglia, Ugo E; Congiu, Terenzio

2013-02-01

A casting technique with methyl-methacrylate (MMA) was applied to the study of the osteon lacunar-canalicular network of human and rabbit cortical bone. The MMA monomer infiltration inside the vascular canals and from these into the lacunar-canalicular system was driven by capillarity, helped by evaporation and the resulting negative pressure in a system of small pipes. There was uniform, centrifugal penetration of the resin inside some osteons, but this was limited to a depth of four to five layers of lacunae. Moreover, not all of the osteon population was infiltrated. This failure can be the result of one of two factors: the incomplete removal of organic debris from the canal and canalicular systems, and lack of drainage at the osteon external border. These data suggest that each secondary osteon is a closed system with a peripheral barrier (represented by the reversal line). As the resin advances into the osteon, the air contained inside the canalicula is compressed and its pressure increases until infiltration is stopped. The casts gave a reliable visualization of the lacunar shape, position and connections between the lacunae without the need for manipulations such as cutting or sawing. Two systems of canalicula could be distinguished, the equatorial, which connected the lacunae (therefore the osteocytes) lying on the same concentric level, and the radial, which established connections between different levels. The equatorial canalicula radiated from the lacunar border forming ramifications on a planar surface around the lacuna, whereas the radial canalicula had a predominantly straight direction perpendicular to the equatorial plane. The mean length of the radial canalicula was 40.12 ± 10.26 μm in rabbits and 38.4 ± 7.35 μm in human osteons; their mean diameter was 174.4 ± 71.12 nm and 195.7 ± 79.58 nm, respectively. The mean equatorial canalicula diameter was 237 ± 66.04 nm in rabbit and 249.7 ± 73.78 nm in human bones, both significantly larger (P < 0.001) than the radial. There were no significant differences between the two species. The lacunar surface measured on the equatorial plane was higher in rabbit than in man, but the difference was not statistically significant. The cast of the lacunar-canalicular network obtained with the reported technique allows a direct, 3-D representation of the system architecture and illustrates how the connections between osteocytes are organized. The comparison with models derived by the assumption of the role of hydraulic conductance and other mechanistic functions provides descriptive, morphological data to the ongoing discussion on the Haversian system biology. © 2012 The Authors Journal of Anatomy © 2012 Anatomical Society.

Global geologic mapping of Mars: The western equatorial region

USGS Publications Warehouse

Scott, D.H.

1985-01-01

Global geologic mapping of Mars was originally accomplished following acquisition of orbital spacecraft images from the Mariner 9 mission. The mapping program represented a joint enterprise by the U.S. Geological Survey and other planetary scientists from universities in the United States and Europe. Many of the Mariner photographs had low resolution or poor albedo contrast caused by atmospheric haze and high-sun angles. Some of the early geologic maps reflect these deficiencies in their poor discrimination and subdivision of rock units. New geologic maps made from higher resolution and better quality Viking images also represent a cooperative effort, by geologists from the U.S. Geological Survey, Arizona State University, and the University of London. This second series of global maps consists of three parts: 1) western equatorial region, 2) eastern equatorial region, and 3) north and south polar regions. These maps, at 1:15 million scale, show more than 60 individual rock-stratigraphic units assigned to three Martian time-stratigraphic systems. The first completed map of the series covers the western equatorial region of Mars. Accompanying the map is a description of the sequence and distribution of major tectonic, volcanic, and fluvial episodes as recorded in the stratigraphic record. ?? 1985.

Global monsoon precipitation responses to large volcanic eruptions

PubMed Central

Liu, Fei; Chai, Jing; Wang, Bin; Liu, Jian; Zhang, Xiao; Wang, Zhiyuan

2016-01-01

Climate variation of global monsoon (GM) precipitation involves both internal feedback and external forcing. Here, we focus on strong volcanic forcing since large eruptions are known to be a dominant mechanism in natural climate change. It is not known whether large volcanoes erupted at different latitudes have distinctive effects on the monsoon in the Northern Hemisphere (NH) and the Southern Hemisphere (SH). We address this issue using a 1500-year volcanic sensitivity simulation by the Community Earth System Model version 1.0 (CESM1). Volcanoes are classified into three types based on their meridional aerosol distributions: NH volcanoes, SH volcanoes and equatorial volcanoes. Using the model simulation, we discover that the GM precipitation in one hemisphere is enhanced significantly by the remote volcanic forcing occurring in the other hemisphere. This remote volcanic forcing-induced intensification is mainly through circulation change rather than moisture content change. In addition, the NH volcanic eruptions are more efficient in reducing the NH monsoon precipitation than the equatorial ones, and so do the SH eruptions in weakening the SH monsoon, because the equatorial eruptions, despite reducing moisture content, have weaker effects in weakening the off-equatorial monsoon circulation than the subtropical-extratropical volcanoes do. PMID:27063141

Jupiter Equatorial Region

NASA Image and Video Library

1998-03-06

This photographic mosaic of images from NASA's Galileo spacecraft covers an area of 34,000 kilometers by 22,000 kilometers (about 21,100 by 13,600 miles) in Jupiter's equatorial region. The dark region near the center of the mosaic is an equatorial "hotspot" similar to the site where the Galileo Probe parachuted into Jupiter's atmosphere in December 1995. These features are holes in the bright, reflective, equatorial cloud layer where heat from Jupiter's deep atmosphere can pass through. The circulation patterns observed here along with the composition measurements from the Galileo Probe suggest that dry air may be converging and sinking over these regions, maintaining their cloud-free appearance. The bright oval in the upper right of the mosaic as well as the other smaller bright features are examples of upwelling of moist air and condensation. These images were taken on December 17, 1996, at a range of 1.5 million kilometers (about 930,000 miles) by the Solid State Imaging camera system aboard Galileo. North is at the top. The mosaic covers latitudes 1 to 19 degrees and is centered at longitude 336 degrees west. The smallest resolved features are tens of kilometers in size. http://photojournal.jpl.nasa.gov/catalog/PIA00604

Global monsoon precipitation responses to large volcanic eruptions.

PubMed

Liu, Fei; Chai, Jing; Wang, Bin; Liu, Jian; Zhang, Xiao; Wang, Zhiyuan

2016-04-11

Climate variation of global monsoon (GM) precipitation involves both internal feedback and external forcing. Here, we focus on strong volcanic forcing since large eruptions are known to be a dominant mechanism in natural climate change. It is not known whether large volcanoes erupted at different latitudes have distinctive effects on the monsoon in the Northern Hemisphere (NH) and the Southern Hemisphere (SH). We address this issue using a 1500-year volcanic sensitivity simulation by the Community Earth System Model version 1.0 (CESM1). Volcanoes are classified into three types based on their meridional aerosol distributions: NH volcanoes, SH volcanoes and equatorial volcanoes. Using the model simulation, we discover that the GM precipitation in one hemisphere is enhanced significantly by the remote volcanic forcing occurring in the other hemisphere. This remote volcanic forcing-induced intensification is mainly through circulation change rather than moisture content change. In addition, the NH volcanic eruptions are more efficient in reducing the NH monsoon precipitation than the equatorial ones, and so do the SH eruptions in weakening the SH monsoon, because the equatorial eruptions, despite reducing moisture content, have weaker effects in weakening the off-equatorial monsoon circulation than the subtropical-extratropical volcanoes do.

Geomagnetically Induced Currents Around the World During the 17 March 2015 Storm

NASA Technical Reports Server (NTRS)

Carter, B. A.; Yizengaw, E.; Pradipta, R.; Weygand, J. M.; Piersanti, M.; Pulkkinen, Antti Aleksi; Moldwin, M. B.; Norman, R.; Zhang, K.

2016-01-01

Geomagnetically induced currents (GICs) represent a significant space weather issue for power grid and pipeline infrastructure, particularly during severe geomagnetic storms. In this study, magnetometer data collected from around the world are analyzed to investigate the GICs caused by the 2015 St. Patricks Day storm. While significant GIC activity in the high-latitude regions due to storm time substorm activity is shown for this event, enhanced GIC activity was also measured at two equatorial stations in the American and Southeast Asian sectors. This equatorial GIC activity is closely examined, and it is shown that it is present both during the arrival of the interplanetary shock at the storm sudden commencement (SSC) in Southeast Asia and during the main phase of the storm approximately 10 h later in South America. The SSC caused magnetic field variations at the equator in Southeast Asia that were twice the magnitude of those observed only a few degrees to the north, strongly indicating that the equatorial electrojet (EEJ) played a significant role. The large equatorial magnetic field variations measured in South America are also examined, and the coincident solar wind data are used to investigate the causes of the sudden changes in the EEJ approximately 10 h into the storm. From this analysis it is concluded that sudden magnetopause current increases due to increases in the solarwind dynamic pressure, and the sudden changes in the resultant magnetospheric and ionospheric current systems, are the primary drivers of equatorial GICs.

A New 50 MHz Phased-Array Radar on Pohnpei: A Fresh Perspective on Equatorial Plasma Bubbles

NASA Astrophysics Data System (ADS)

Tsunoda, R. T.

2014-12-01

A new, phased-array antenna-steering capability has recently been added to an existing 50-MHz radar on Pohnpei, Federated States of Micronesia, in the central Pacific region. This radar, which we refer to as PAR-50, is capable of scanning in the vertical east-west plane, ±60° about the zenith. The alignment in the magnetic east-west direction allows detection of radar backscatter from small-scale irregularities that develop in the equatorial ionosphere, including those associated with equatorial plasma bubbles (EPBs). The coverage, about ±800 km in zonal distance, at an altitude of 500 km, is essentially identical to that provided by ALTAIR, a fully-steerable incoherent-scatter radar, which has been used in a number of studies of EPBs. Unlike ALTAIR, which has only been operated for several hours on a handful of selected nights, the PAR-50 has already been operated continuously, while performing repeated scans, since April 2014. In this presentation, we describe the PAR-50, then, compare it to ALTAIR and the Equatorial Atmospheric Radar (EAR); the latter is the only other phased-array system in use for equatorial studies. We then assess what we have learned about EPBs from backscatter radar measurements, and discuss how the PAR-50 can provide a fresh perspective to our understanding. Clearly, the ability to sort out the space-time ambiguities in EPB development from sequences of spatial maps of EPBs is crucial to our understanding of how EPBs develop.

SAV1 promotes Hippo kinase activation through antagonizing the PP2A phosphatase STRIPAK

PubMed Central

Osinski, Adam; Tomchick, Diana R; Brautigam, Chad A

2017-01-01

The Hippo pathway controls tissue growth and homeostasis through a central MST-LATS kinase cascade. The scaffold protein SAV1 promotes the activation of this kinase cascade, but the molecular mechanisms remain unknown. Here, we discover SAV1-mediated inhibition of the PP2A complex STRIPAKSLMAP as a key mechanism of MST1/2 activation. SLMAP binding to autophosphorylated MST2 linker recruits STRIPAK and promotes PP2A-mediated dephosphorylation of MST2 at the activation loop. Our structural and biochemical studies reveal that SAV1 and MST2 heterodimerize through their SARAH domains. Two SAV1–MST2 heterodimers further dimerize through SAV1 WW domains to form a heterotetramer, in which MST2 undergoes trans-autophosphorylation. SAV1 directly binds to STRIPAK and inhibits its phosphatase activity, protecting MST2 activation-loop phosphorylation. Genetic ablation of SLMAP in human cells leads to spontaneous activation of the Hippo pathway and alleviates the need for SAV1 in Hippo signaling. Thus, SAV1 promotes Hippo activation through counteracting the STRIPAKSLMAP PP2A phosphatase complex. PMID:29063833

SAV1 promotes Hippo kinase activation through antagonizing the PP2A phosphatase STRIPAK

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bae, Sung Jun; Ni, Lisheng; Osinski, Adam

The Hippo pathway controls tissue growth and homeostasis through a central MST-LATS kinase cascade. The scaffold protein SAV1 promotes the activation of this kinase cascade, but the molecular mechanisms remain unknown. Here, we discover SAV1-mediated inhibition of the PP2A complex STRIPAKSLMAP as a key mechanism of MST1/2 activation. SLMAP binding to autophosphorylated MST2 linker recruits STRIPAK and promotes PP2A-mediated dephosphorylation of MST2 at the activation loop. Our structural and biochemical studies reveal that SAV1 and MST2 heterodimerize through their SARAH domains. Two SAV1–MST2 heterodimers further dimerize through SAV1 WW domains to form a heterotetramer, in which MST2 undergoes trans-autophosphorylation. SAV1more » directly binds to STRIPAK and inhibits its phosphatase activity, protecting MST2 activation-loop phosphorylation. Genetic ablation of SLMAP in human cells leads to spontaneous activation of the Hippo pathway and alleviates the need for SAV1 in Hippo signaling. Thus, SAV1 promotes Hippo activation through counteracting the STRIPAKSLMAP PP2A phosphatase complex.« less

The evolutionary landscape of intergenic trans-splicing events in insects

PubMed Central

Kong, Yimeng; Zhou, Hongxia; Yu, Yao; Chen, Longxian; Hao, Pei; Li, Xuan

2015-01-01

To explore the landscape of intergenic trans-splicing events and characterize their functions and evolutionary dynamics, we conduct a mega-data study of a phylogeny containing eight species across five orders of class Insecta, a model system spanning 400 million years of evolution. A total of 1,627 trans-splicing events involving 2,199 genes are identified, accounting for 1.58% of the total genes. Homology analysis reveals that mod(mdg4)-like trans-splicing is the only conserved event that is consistently observed in multiple species across two orders, which represents a unique case of functional diversification involving trans-splicing. Thus, evolutionarily its potential for generating proteins with novel function is not broadly utilized by insects. Furthermore, 146 non-mod trans-spliced transcripts are found to resemble canonical genes from different species. Trans-splicing preserving the function of ‘breakup' genes may serve as a general mechanism for relaxing the constraints on gene structure, with profound implications for the evolution of genes and genomes. PMID:26521696

The Somali current at the equator: annual cycle of currents and transports in the upper 1000 m and connection to neighbouring latitudes

NASA Astrophysics Data System (ADS)

Schott, Friedrich; Swallow, John C.; Fieux, Michèle

1990-12-01

Current measurements were obtained with moored stations during October 1984 to October 1986 in two consecutive deployments across the Somali Current on the equator. For the transport calculations the deficiency of conventional subsurface moorings, i.e. no data from close to the surface, had to be overcome using the historical ship drift climatology. While the current structure during the summer monsoon is that typical of a western boundary current, the profile in winter is far from being a weaker southward reverse of the summer situation. Below a thin surface layer of southward flow, there is a northward undercurrent between about 120 and 400 m depth. Below that, the flow reverses again to southward. This results in drastic differences in cross-equatorial monsoon season transports. While the summer mean transport is 21 Sv for the upper 500 m, the winter monsoon mean for that depth range is close to zero. The annual mean transport in the upper 500 m is 10 Sv northward. Very little transport is measured in the 500-1000 m depth range in either season or the annual mean. The almost closed mass budget of the boundary current system during the winter circulation allows a calculation of cross-equatorial heat transport, which comes out to -3 × 10 14 W (southward) for the northeast monsoon season mean. The heat flux associated with the annually varying part of the boundary current is small, only about -0.3 × 10 14 W or about 5% of the total cross-equatorial heat flux as estimated by other methods. By combining the equatorial measurements with earlier off-equatorial current observations, particularly at 2°-4°S and 5°N, and with property distributions (salinity and oxygen) on isopycnal surfaces, analysed from the historical data file, a synopsis of the seasonal circulation changes of the entire Somali Current system between about 4°S and 12°N is then derived.

Understanding the El Niño-like Oceanic Response in the Tropical Pacific to Global Warming

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Yiyong; Lu, Jian; Liu, Fukai

The enhanced central and eastern Pacific SST warming and the associated ocean processes under global warming are investigated using the ocean component of the Community Earth System Model (CESM), Parallel Ocean Program version 2 (POP2). The tropical SST warming pattern in the coupled CESM can be faithfully reproduced by the POP2 forced with surface fluxes computed using the aerodynamic bulk formula. By prescribing the wind stress and/or wind speed through the bulk formula, the effects of wind stress change and/or the wind-evaporation-SST (WES) feedback are isolated and their linearity is evaluated in this ocean-alone setting. Result shows that, although themore » weakening of the equatorial easterlies contributes positively to the El Niño-like SST warming, 80% of which can be simulated by the POP2 without considering the effects of wind change in both mechanical and thermodynamic fluxes. This result points to the importance of the air-sea thermal interaction and the relative feebleness of the ocean dynamical process in the El Niño-like equatorial Pacific SST response to global warming. On the other hand, the wind stress change is found to play a dominant role in the oceanic response in the tropical Pacific, accounting for most of the changes in the equatorial ocean current system and thermal structures, including the weakening of the surface westward currents, the enhancement of the near-surface stratification and the shoaling of the equatorial thermocline. Interestingly, greenhouse gas warming in the absence of wind stress change and WES feedback also contributes substantially to the changes at the subsurface equatorial Pacific. Further, this warming impact can be largely replicated by an idealized ocean experiment forced by a uniform surface heat flux, whereby, arguably, a purest form of oceanic dynamical thermostat is revealed.« less

Runtime Assurance Framework Development for Highly Adaptive Flight Control Systems

DTIC Science & Technology

2015-12-01

performing a surveillance mission. The demonstration platform consisted of RTA systems for the inner- loop control, outer- loop guidance, ownship flight...For the inner- loop , the concept of employing multiple transition controllers in the reversionary control system was studied. For all feedback levels...5 RTA Protection Applied to Inner- Loop Control Systems .................................................61 5.1 General Description of Morphing Wing

The tectonic setting of the Seychelles, Mascarene and Amirante Plateaus in the Western Equatorial Indian Ocean

NASA Technical Reports Server (NTRS)

Mart, Y.

1988-01-01

A system of marine plateaus occurs in the western equatorial Indian Ocean, forming an arcuate series of wide and shallow banks with small islands in places. The oceanic basins that surround the Seychelles - Amirante region are of various ages and reflect a complex seafloor spreading pattern. The structural analysis of the Seychelle - Amirante - Mascarene region reflects the tectonic evolution of the western equatorial Indian Ocean. It is suggested that due to the seafloor spreading during a tectonic stage, the Seychelles continental block drifted southwestwards to collide with the oceanic crust of the Mascarene Basin, forming an elongated folded structure at first, and then a subduction zone. The morphological similarity, the lithological variability and the different origin of the Seychelles Bank, the Mascarene Plateau and the Amirante Arc emphasizes the significant convergent effects of various plate tectonic processes on the development of marine plateaus.

Dynamics of Monsoon-Induced Biennial Variability in ENSO

NASA Technical Reports Server (NTRS)

Kim, Kyu-Myong; Lau, K.-M.; Einaudi, Franco (Technical Monitor)

2000-01-01

The mechanism of the quasi-biennial tendency in El Nino Southern Oscillation (ENSO)-monsoon coupled system is investigated using an intermediate coupled model. The monsoon wind forcing is prescribed as a function of Sea Surface Temperature (SST) anomalies based on the relationship between zonal wind anomalies over the western Pacific to sea level change in the equatorial eastern Pacific. The key mechanism of quasi-biennial tendency in El Nino evolution is found to be in the strong coupling of ENSO to monsoon wind forcing over the western Pacific. Strong boreal summer monsoon wind forcing, which lags the maximum SST anomaly in the equatorial eastern Pacific approximately 6 months, tends to generate Kelvin waves of the opposite sign to anomalies in the eastern Pacific and initiates the turnabout in the eastern Pacific. Boreal winter monsoon forcing, which has zero lag with maximum SST in the equatorial eastern Pacific, tends to damp the ENSO oscillations.

Precambrian basement geologic map of Montana; an interpretation of aeromagnetic anomalies

USGS Publications Warehouse

Sims, P.K.; O'Neill, J. M.; Bankey, Viki; Anderson, E.

2004-01-01

Newly compiled aeromagnetic anomaly data of Montana, in conjunction with the known geologic framework of basement rocks, have been combined to produce a new interpretive geologic basement map of Montana. Crystalline basement rocks compose the basement, but are exposed only in the cores of mountain ranges in southwestern Montana. Principal features deduced from the map are: (1) A prominent northeast-trending, 200-km-wide zone of spaced negative anomalies, which extends more than 700 km from southwestern Montana's Beaverhead Mountains to the Canadian border and reflects suturing of the Archean Mexican Hat Block against the Archean Wyoming Province along the Paleoproterozoic Trans-Montana Orogen (new name) at about 1.9-1.8 Ga; (2) North-northwest-trending magnetic lows in northeastern Montana, which reflect the 1.9-1.8 Ga Trans-Hudson Orogen and truncate the older Trans-Montana Zone; and (3) Subtle northwest- and west-trending negative anomalies in central and western Montana, which represent the northernmost segment of brittle-ductile transcurrent faults of the newly recognized Mesoproterozoic Trans-Rocky Mountain fault system. Structures developed in the Proterozoic provided zones of crustal weakness reactivated during younger Proterozoic and Phanerozoic igneous and tectonic activity. For example, the Trans-Montana Zone guided basement involved thrust faulting in southwestern Montana during the Sevier Orogeny. The Boulder Batholith and associated ore deposits and the linear belt of alkaline intrusions to the northeast were localized along a zone of weakness between the Missouri River suture and the Dillon shear zone of the Trans-Montana Orogen. The northwest-trending faults of Trans-Rocky Mountain system outline depocenters for sedimentary rocks in the Belt Basin. This fault system provided zones of weakness that guided Laramide uplifts during basement crustal shortening. Northwest-trending zones have been locally reactivated during Neogene basin-range extension.

Reliable Control Using Disturbance Observer and Equivalent Transfer Function for Position Servo System in Current Feedback Loop Failure

NASA Astrophysics Data System (ADS)

Ishikawa, Kaoru; Nakamura, Taro; Osumi, Hisashi

A reliable control method is proposed for multiple loop control system. After a feedback loop failure, such as case of the sensor break down, the control system becomes unstable and has a big fluctuation even if it has a disturbance observer. To cope with this problem, the proposed method uses an equivalent transfer function (ETF) as active redundancy compensation after the loop failure. The ETF is designed so that it does not change the transfer function of the whole system before and after the loop failure. In this paper, the characteristic of reliable control system that uses an ETF and a disturbance observer is examined by the experiment that uses the DC servo motor for the current feedback loop failure in the position servo system.

Research on the man in the loop control system of the robot arm based on gesture control

NASA Astrophysics Data System (ADS)

Xiao, Lifeng; Peng, Jinbao

2017-03-01

The Man in the loop control system of the robot arm based on gesture control research complex real-world environment, which requires the operator to continuously control and adjust the remote manipulator, as the background, completes the specific mission human in the loop entire system as the research object. This paper puts forward a kind of robot arm control system of Man in the loop based on gesture control, by robot arm control system based on gesture control and Virtual reality scene feedback to enhance immersion and integration of operator, to make operator really become a part of the whole control loop. This paper expounds how to construct a man in the loop control system of the robot arm based on gesture control. The system is a complex system of human computer cooperative control, but also people in the loop control problem areas. The new system solves the problems that the traditional method has no immersion feeling and the operation lever is unnatural, the adjustment time is long, and the data glove mode wears uncomfortable and the price is expensive.

Equatorial flattenings of planets - Venus

NASA Astrophysics Data System (ADS)

Burša, M.; Šíma, Z.

1985-05-01

The dimensions of Venus were found in order to calculate the degree of flattening due to gravity. The calculations were carried out within the framework of the general flattening theory of Bursa and Sima (1969). Data on the gravitational field of Venus, obtained during observations by Mottinger and Williams (1983) were incorporated in the equations. It is shown that the figure of Venus is different from all terrestrial bodies in the solar system: the surface in the equatorial zone is located above the best-fitting triaxial Venus ellipsoid. Deflections of the vertical at the planet surface are given.

Detection of Ionospheric Alfven Resonator Signatures in the Equatorial Ionosphere

NASA Technical Reports Server (NTRS)

Simoes, Fernando; Klenzing, Jeffrey; Ivanov, Stoyan; Pfaff, Robert; Freudenreich, Henry; Bilitza, Dieter; Rowland, Douglas; Bromund, Kenneth; Liebrecht, Maria Carmen; Martin, Steven;

Effects of industrially produced trans fat on markers of systemic inflammation: evidence from a randomized trial in women

USDA-ARS?s Scientific Manuscript database

Background: Intake of industrial trans fatty acids (TFA) has been positively associated to systemic markers of low-grade inflammation and endothelial dysfunction in cross-sectional studies, but results from intervention studies are inconclusive. Objective: To examine the effect of a high intake of T...

Closed-loop fiber optic gyroscope with homodyne detection

NASA Astrophysics Data System (ADS)

Zhu, Yong; Qin, BingKun; Chen, Shufen

1996-09-01

Interferometric fiber optic gyroscope (IFOG) has been analyzed with autocontrol theory in this paper. An open-loop IFOG system is not able to restrain the bias drift, but a closed-loop IFOG system can do it very well using negative feedback in order to suppress zero drift. The result of our theoretic analysis and computer simulation indicate that the bias drift of a closed-loop system is smaller than an open- loop one.

Structure of H/ACA RNP protein Nhp2p reveals cis/trans isomerization of a conserved proline at the RNA and Nop10 binding interface

PubMed Central

Koo, Bon-Kyung; Park, Chin-Ju; Fernandez, Cesar F.; Chim, Nicholas; Ding, Yi; Chanfreau, Guillaume; Feigon, Juli

2011-01-01

H/ACA small nucleolar and Cajal body ribonucleoproteins (RNPs) function in site-specific pseudouridylation of eukaryotic rRNA and snRNA, rRNA processing, and vertebrate telomerase biogenesis. Nhp2, one of four essential protein components of eukaryotic H/ACA RNPs, forms a core trimer with the pseudouridylase Cbf5 and Nop10 that specifically binds to H/ACA RNAs. Crystal structures of archaeal H/ACA RNPs have revealed how the protein components interact with each other and with the H/ACA RNA. However, in place of Nhp2p, archaeal H/ACA RNPs contain L7Ae, which binds specifically to an RNA K-loop motif absent in eukaryotic H/ACA RNPs, while Nhp2 binds a broader range of RNA structures. We report solution NMR studies of S. cerevisiae Nhp2 (Nhp2p), which reveal that Nhp2p exhibits two major conformations in solution due to cis/trans isomerization of the evolutionarily conserved Pro83. The equivalent proline is in the cis conformation in all reported structures of L7Ae and other homologous proteins. Nhp2p has the expected α-β-α fold, but the solution structures of the major conformation of Nhp2p with trans Pro83 and of Nhp2p-S82W with cis Pro83 reveal that Pro83 cis/trans isomerization affects the positions of numerous residues at the Nop10- and RNA-binding interface. An S82W substitution, which stabilizes the cis conformation, also stabilizes the association of Nhp2p with H/ACA snoRNPs in vivo. We propose that Pro83 plays a key role in the assembly of the eukaryotic H/ACA RNP, with the cis conformation locking in a stable Cbf5-Nop10-Nhp2 ternary complex and positioning the protein backbone to interact with the H/ACA RNA. PMID:21708174

Crystal structure of heterodimeric hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 reveals that the small subunit is directly involved in the product chain length regulation.

PubMed

Sasaki, Daisuke; Fujihashi, Masahiro; Okuyama, Naomi; Kobayashi, Yukiko; Noike, Motoyoshi; Koyama, Tanetoshi; Miki, Kunio

2011-02-04

Hexaprenyl diphosphate synthase from Micrococcus luteus B-P 26 (Ml-HexPPs) is a heterooligomeric type trans-prenyltransferase catalyzing consecutive head-to-tail condensations of three molecules of isopentenyl diphosphates (C(5)) on a farnesyl diphosphate (FPP; C(15)) to form an (all-E) hexaprenyl diphosphate (HexPP; C(30)). Ml-HexPPs is known to function as a heterodimer of two different subunits, small and large subunits called HexA and HexB, respectively. Compared with homooligomeric trans-prenyltransferases, the molecular mechanism of heterooligomeric trans-prenyltransferases is not yet clearly understood, particularly with respect to the role of the small subunits lacking the catalytic motifs conserved in most known trans-prenyltransferases. We have determined the crystal structure of Ml-HexPPs both in the substrate-free form and in complex with 7,11-dimethyl-2,6,10-dodecatrien-1-yl diphosphate ammonium salt (3-DesMe-FPP), an analog of FPP. The structure of HexB is composed of mostly antiparallel α-helices joined by connecting loops. Two aspartate-rich motifs (designated the first and second aspartate-rich motifs) and the other characteristic motifs in HexB are located around the diphosphate part of 3-DesMe-FPP. Despite the very low amino acid sequence identity and the distinct polypeptide chain lengths between HexA and HexB, the structure of HexA is quite similar to that of HexB. The aliphatic tail of 3-DesMe-FPP is accommodated in a large hydrophobic cleft starting from HexB and penetrating to the inside of HexA. These structural features suggest that HexB catalyzes the condensation reactions and that HexA is directly involved in the product chain length control in cooperation with HexB.

TransGuide : model deployment initiative design report

DOT National Transportation Integrated Search

1998-09-01

This report documents the high-level design of the TransGuide MDI project and discusses the design trade-off decisions. A detailed, specific project level design is provided in each projects System Design document.

Transformation reborn: A new generation expert system for planning HST operations

NASA Technical Reports Server (NTRS)

Gerb, Andrew

1991-01-01

The Transformation expert system (TRANS) converts proposals for astronomical observations with the Hubble Space Telescope (HST) into detailed observing plans. It encodes expert knowledge to solve problems faced in planning and commanding HST observations to enable their processing by the Science Operations Ground System (SOGS). Among these problems are determining an acceptable order of executing observations, grouping of observations to enhance efficiency and schedulability, inserting extra observations when necessary, and providing parameters for commanding HST instruments. TRANS is currently an operational system and plays a critical role in the HST ground system. It was originally designed using forward-chaining provided by the OPS5 expert system language, but has been reimplemented using a procedural knowledge base. This reimplementation was forced by the explosion in the amount of OPS5 code required to specify the increasingly complicated situations requiring expert-level intervention by the TRANS knowledge base. This problem was compounded by the difficulty of avoiding unintended interaction between rules. To support the TRANS knowledge base, XCL, a small but powerful extension to Commom Lisp was implemented. XCL allows a compact syntax for specifying assignments and references to object attributes. XCL also allows the capability to iterate over objects and perform keyed lookup. The reimplementation of TRANS has greatly diminished the effort needed to maintain and enhance it. As a result of this, its functions have been expanded to include warnings about observations that are difficult or impossible to schedule or command, providing data to aid SPIKE, an intelligent planning system used for HST long-term scheduling, and providing information to the Guide Star Selection System (GSSS) to aid in determination of the long range availability of guide stars.

Simultaneous analysis of tramadol, O-desmethyltramadol, and N-desmethyltramadol enantiomers in rat plasma by high-performance liquid chromatography-tandem mass spectrometry: application to pharmacokinetics.

PubMed

Godoy, Ana Leonor Pardo Campos; De Moraes, Natália Valadares; Martinez, Edson Zangiacomi; Carvalho, Teresa Maria De Jesus Ponte; Marques, Maria Paula; Lanchote, Vera Lucia

2011-04-01

Tramadol (T) is available as a racemic mixture of (+)-trans-T and (-)-trans-T. The main metabolic pathways are O-demethylation and N-demethylation, producing trans-O-desmethyltramadol (M1) and trans-N-desmethyltramadol (M2) enantiomers, respectively. The analgesic effect of T is related to the opioid activity of (+)-trans-T and (+)-M1 and to the monoaminergic action of (+/-)-trans-T. This is the first study using tandem mass spectrometry as a detection system for the simultaneous analysis of trans-T, M1, and M2 enantiomers. The analytes were resolved on a Chiralpak® AD column using hexane:ethanol (95.5:4.5, v/v) plus 0.1% diethylamine as the mobile phase. The quantitation limits were 0.5 ng/ml for trans-T and M1 and 0.1 ng/ml for M2. The method developed and validated here was applied to a pharmacokinetic study in rats. Male Wistar rats (n=6 at each time point) received a single oral dose of 20 mg/kg racemic trans-T. Blood samples were collected up to 12 h after drug administration. The kinetic disposition of trans-T and M2 was enantioselective (AUC((+))/((-)) ratio=4.16 and 6.36, respectively). The direction and extent of enantioselectivity in the pharmacokinetics of trans-T and M2 in rats were comparable to data previously reported for healthy volunteers, suggesting that rats are a suitable model for enantioselective studies of trans-T pharmacokinetics. Copyright © 2010 Wiley-Liss, Inc.

A conserved intronic U1 snRNP-binding sequence promotes trans-splicing in Drosophila

PubMed Central

Gao, Jun-Li; Fan, Yu-Jie; Wang, Xiu-Ye; Zhang, Yu; Pu, Jia; Li, Liang; Shao, Wei; Zhan, Shuai; Hao, Jianjiang

2015-01-01

Unlike typical cis-splicing, trans-splicing joins exons from two separate transcripts to produce chimeric mRNA and has been detected in most eukaryotes. Trans-splicing in trypanosomes and nematodes has been characterized as a spliced leader RNA-facilitated reaction; in contrast, its mechanism in higher eukaryotes remains unclear. Here we investigate mod(mdg4), a classic trans-spliced gene in Drosophila, and report that two critical RNA sequences in the middle of the last 5′ intron, TSA and TSB, promote trans-splicing of mod(mdg4). In TSA, a 13-nucleotide (nt) core motif is conserved across Drosophila species and is essential and sufficient for trans-splicing, which binds U1 small nuclear RNP (snRNP) through strong base-pairing with U1 snRNA. In TSB, a conserved secondary structure acts as an enhancer. Deletions of TSA and TSB using the CRISPR/Cas9 system result in developmental defects in flies. Although it is not clear how the 5′ intron finds the 3′ introns, compensatory changes in U1 snRNA rescue trans-splicing of TSA mutants, demonstrating that U1 recruitment is critical to promote trans-splicing in vivo. Furthermore, TSA core-like motifs are found in many other trans-spliced Drosophila genes, including lola. These findings represent a novel mechanism of trans-splicing, in which RNA motifs in the 5′ intron are sufficient to bring separate transcripts into close proximity to promote trans-splicing. PMID:25838544

Photoregulating RNA digestion using azobenzene linked dumbbell antisense oligodeoxynucleotides.

PubMed

Wu, Li; He, Yujian; Tang, Xinjing

2015-06-17

Introduction of 4,4'-bis(hydroxymethyl)-azobenzene (azo) to dumbbell hairpin oligonucleotides at the loop position was able to reversibly control the stability of the whole hairpin structure via UV or visible light irradiation. Here, we designed and synthesized a series of azobenzene linked dumbbell antisense oligodeoxynucleotides (asODNs) containing two terminal hairpins that are composed of an asODN and a short inhibitory sense strand. Thermal melting studies of these azobenzene linked dumbbell asODNs indicated that efficient trans to cis photoisomerization of azobenzene moieties induced large difference in thermal stability (ΔTm = 12.1-21.3 °C). In addition, photomodulation of their RNA binding abilities and RNA digestion by RNase H was investigated. The trans-azobenzene linked asODNs with the optimized base pairs between asODN strands and inhibitory sense strands could only bind few percentage of the target RNA, while it was able to recover their binding to the target RNA and degrade it by RNase H after light irradiation. Upon optimization, it is promising to use these azobenzene linked asODNs for reversible spatial and temporal regulation of antisense activities based on both steric binding and RNA digestion by RNase H.

Evolutionary stasis in pollen morphogenesis due to natural selection.

PubMed

Matamoro-Vidal, Alexis; Prieu, Charlotte; Furness, Carol A; Albert, Béatrice; Gouyon, Pierre-Henri

2016-01-01

The contribution of developmental constraints and selective forces to the determination of evolutionary patterns is an important and unsolved question. We test whether the long-term evolutionary stasis observed for pollen morphogenesis (microsporogenesis) in eudicots is due to developmental constraints or to selection on a morphological trait shaped by microsporogenesis: the equatorial aperture pattern. Most eudicots have three equatorial apertures but several taxa have independently lost the equatorial pattern and have microsporogenesis decoupled from aperture pattern determination. If selection on the equatorial pattern limits variation, we expect to see increased variation in microsporogenesis in the nonequatorial clades. Variation of microsporogenesis was studied using phylogenetic comparative analyses in 83 species dispersed throughout eudicots including species with and without equatorial apertures. The species that have lost the equatorial pattern have highly variable microsporogenesis at the intra-individual and inter-specific levels regardless of their pollen morphology, whereas microsporogenesis remains stable in species with the equatorial pattern. The observed burst of variation upon loss of equatorial apertures shows that there are no strong developmental constraints precluding variation in microsporogenesis, and that the stasis is likely to be due principally to selective pressure acting on pollen morphogenesis because of its implication in the determination of the equatorial aperture pattern. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

In vivo trans-rectal ultrasound coupled trans-rectal near-infrared optical tomography of canine prostate bearing transmissible venereal tumor

NASA Astrophysics Data System (ADS)

Jiang, Zhen; Holyoak, G. Reed; Bartels, Kenneth E.; Ritchey, Jerry W.; Xu, Guan; Bunting, Charles F.; Slobodov, Gennady; Krasinski, Jerzy S.; Piao, Daqing

2009-02-01

In vivo trans-rectal near-infrared (NIR) optical tomography is conducted on a tumor-bearing canine prostate with the assistance of trans-rectal ultrasound (TRUS). The canine prostate tumor model is made possible by a unique round cell neoplasm of dogs, transmissible venereal tumor (TVT) that can be transferred from dog to dog regardless of histocompatibility. A characterized TVT cell line was homogenized and passed twice in subcutaneous tissue of NOD/SCID mice. Following the second passage, the tumor was recovered, homogenized and then inoculated by ultrasound guidance into the prostate gland of a healthy dog. The dog was then imaged with a combined trans-rectal NIR and TRUS imager using an integrated trans-rectal NIR/US applicator. The image was taken by NIR and US modalities concurrently, both in sagittal view. The trans-rectal NIR imager is a continuous-wave system that illuminates 7 source channels sequentially by a fiber switch to deliver sufficient light power to the relatively more absorbing prostate tissue and samples 7 detection channels simultaneously by a gated intensified high-resolution CCD camera. This work tests the feasibility of detecting prostate tumor by trans-rectal NIR optical tomography and the benefit of augmenting TRUS with trans-rectal NIR imaging.

Thermo-mechanical analysis of ITER first mirrors and its use for the ITER equatorial visible∕infrared wide angle viewing system optical design.

PubMed

Joanny, M; Salasca, S; Dapena, M; Cantone, B; Travère, J M; Thellier, C; Fermé, J J; Marot, L; Buravand, O; Perrollaz, G; Zeile, C

2012-10-01

ITER first mirrors (FMs), as the first components of most ITER optical diagnostics, will be exposed to high plasma radiation flux and neutron load. To reduce the FMs heating and optical surface deformation induced during ITER operation, the use of relevant materials and cooling system are foreseen. The calculations led on different materials and FMs designs and geometries (100 mm and 200 mm) show that the use of CuCrZr and TZM, and a complex integrated cooling system can limit efficiently the FMs heating and reduce their optical surface deformation under plasma radiation flux and neutron load. These investigations were used to evaluate, for the ITER equatorial port visible∕infrared wide angle viewing system, the impact of the FMs properties change during operation on the instrument main optical performances. The results obtained are presented and discussed.

Satellite orbit considerations for a global change technology architecture trade study

NASA Technical Reports Server (NTRS)

Harrison, Edwin F.; Gibson, Gary G.; Suttles, John T.; Buglia, James J.; Taback, Israel

1991-01-01

A study was conducted to determine satellite orbits for earth observation missions aimed at obtaining data for assessing data global climate change. A multisatellite system is required to meet the scientific requirements for temporal coverage over the globe. The best system consists of four sun-synchronous satellites equally spaced in local time of equatorial crossing. This system can obtain data every three hours for all regions. Several other satellite systems consisting of combinations of sun-synchronous orbits and either the Space Station Freedom or a mid-altitude equatorial satellite can provide three to six hour temporal coverage, which is sufficient for measuring many of the parameters required for the global change monitoring mission. Geosynchronous satellites are required to study atmospheric and surface processes involving variations on the order of a few minutes to an hour. One or two geosynchronous satellites can be relocated in longitude to study processes over selected regions of earth.

Structural basis for ribosome protein S1 interaction with RNA in trans-translation of Mycobacterium tuberculosis.

PubMed

Fan, Yi; Dai, Yazhuang; Hou, Meijing; Wang, Huilin; Yao, Hongwei; Guo, Chenyun; Lin, Donghai; Liao, Xinli

2017-05-27

Ribosomal protein S1 (RpsA), the largest 30S protein in ribosome, plays a significant role in translation and trans-translation. In Mycobacterium tuberculosis, the C-terminus of RpsA is known as tuberculosis drug target of pyrazinoic acid, which inhibits the interaction between MtRpsA and tmRNA in trans-translation. However, the molecular mechanism underlying the interaction of MtRpsA with tmRNA remains unknown. We herein analyzed the interaction of the C-terminal domain of MtRpsA with three RNA fragments poly(A), sMLD and pre-sMLD. NMR titration analysis revealed that the RNA binding sites on MtRpsA CTD are mainly located in the β2, β3 and β5 strands and the adjacent L3 loop of the S1 domain. Fluorescence experiments determined the MtRpsA CTD binding to RNAs are in the micromolar affinity range. Sequence analysis also revealed conserved residues in the mapped RNA binding region. Residues L304, V305, G308, F310, H322, I323, R357 and I358 were verified to be the key residues influencing the interaction between MtRpsA CTD and pre-sMLD. Molecular docking further confirmed that the poly(A)-like sequence and sMLD of tmRNA are all involved in the protein-RNA interaction, through charged interaction and hydrogen bonds. The results will be beneficial for designing new anti-tuberculosis drugs. Copyright © 2017 Elsevier Inc. All rights reserved.

Conformational diversity in contryphans from Conus venom: cis-trans isomerisation and aromatic/proline interactions in the 23-membered ring of a 7-residue peptide disulfide loop.

PubMed

Sonti, Rajesh; Gowd, Konkallu Hanumae; Rao, K N Shashanka; Ragothama, Srinivasarao; Rodriguez, Alex; Perez, Juan Jesus; Balaram, Padmanabhan

2013-11-04

Conformational diversity or "shapeshifting" in cyclic peptide natural products can, in principle, confer a single molecular entity with the property of binding to multiple receptors. Conformational equilibria have been probed in the contryphans, which are peptides derived from Conus venom possessing a 23-membered cyclic disulfide moiety. The natural sequences derived from Conus inscriptus, GCV(D)LYPWC* (In936) and Conus loroisii, GCP(D)WDPWC* (Lo959) differ in the number of proline residues within the macrocyclic ring. Structural characterisation of distinct conformational states arising from cis-trans equilibria about Xxx-Pro bonds is reported. Isomerisation about the C2-P3 bond is observed in the case of Lo959 and about the Y5-P6 bond in In936. Evidence is presented for as many as four distinct species in the case of the synthetic analogue V3P In936. The Tyr-Pro-Trp segment in In936 is characterised by distinct sidechain orientations as a consequence of aromatic/proline interactions as evidenced by specific sidechain-sidechain nuclear Overhauser effects and ring current shifted proton chemical shifts. Molecular dynamics simulations suggest that Tyr5 and Trp7 sidechain conformations are correlated and depend on the geometry of the Xxx-Pro bond. Thermodynamic parameters are derived for the cis↔trans equilibrium for In936. Studies on synthetic analogues provide insights into the role of sequence effects in modulating isomerisation about Xxx-Pro bonds. Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Highly active, low-valence molybdenum- and tungsten-amide catalysts for bifunctional imine-hydrogenation reactions.

PubMed

Chakraborty, Subrata; Blacque, Olivier; Fox, Thomas; Berke, Heinz

2014-01-01

The reactions of [M(NO)(CO)4(ClAlCl3)] (M=Mo, W) with (iPr2PCH2CH2)2NH, (PN(H)P) at 90 °C afforded [M(NO)(CO)(PN(H)P)Cl] complexes (M=Mo, 1a; W, 1b). The treatment of compound 1a with KOtBu as a base at room temperature yielded the alkoxide complex [Mo(NO)(CO)(PN(H)P)(OtBu)] (2a). In contrast, with the amide base Na[N(SiMe3 )2 ], the PN(H) P ligand moieties in compounds 1a and 1b could be deprotonated at room temperature, thereby inducing dehydrochlorination into amido complexes [M(NO)(CO)(PNP)] (M=Mo, 3a; W, 3b; PNP=(iPr2PCH2CH2)2N)). Compounds 3a and 3b have pseudo-trigonal-bipyramidal geometries, in which the amido nitrogen atom is in the equatorial plane. At room temperature, compounds 3a and 3b were capable of adding dihydrogen, with heterolytic splitting, thereby forming pairs of isomeric amine-hydride complexes [Mo(NO)(CO)H(PN(H)P)] (4a(cis) and 4a(trans)) and [W(NO)(CO)H(PN(H)P)] (4b(cis) and 4b(trans); cis and trans correspond to the position of the H and NO groups). H2 approaches the Mo/W=N bond in compounds 3a,b from either the CO-ligand side or from the NO-ligand side. Compounds 4a(cis) and 4a(trans) were only found to be stable under a H2 atmosphere and could not be isolated. At 140 °C and 60 bar H2 , compounds 3a and 3b catalyzed the hydrogenation of imines, thereby showing maximum turnover frequencies (TOFs) of 2912 and 1120 h(-1), respectively, for the hydrogenation of N-(4-methoxybenzylidene)aniline. A Hammett plot for various para-substituted imines revealed linear correlations with a negative slope of -3.69 for para substitution on the benzylidene side and a positive slope of 0.68 for para substitution on the aniline side. Kinetics analysis revealed the initial rate of the hydrogenation reactions to be first order in c(cat.) and zeroth order in c(imine). Deuterium kinetic isotope effect (DKIE) experiments furnished a low kH /kD value (1.28), which supported a Noyori-type metal-ligand bifunctional mechanism with H2 addition as the rate-limiting step. Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Towards natural inflation from weakly coupled heterotic string theory

NASA Astrophysics Data System (ADS)

Abe, Hiroyuki; Kobayashi, Tatsuo; Otsuka, Hajime

2015-06-01

We propose natural inflation from the heterotic string theory on the "Swiss-Cheese" Calabi-Yau manifold with multiple U(1) magnetic fluxes. Such multiple U(1) magnetic fluxes stabilize the same number of the linear combination of the universal axion and Kähler axions, and one of the Kähler axions is identified as the inflaton. This axion decay constant can be determined by the size of one-loop corrections to the gauge kinetic function of the hidden gauge groups, which leads effectively to the trans-Planckian axion decay constant consistent with the Planck data. During the inflation, the real parts of the moduli are also stabilized by employing the nature of the "Swiss-Cheese" Calabi-Yau manifold.

Demonstration of Standard HVAC Single-Loop Digital Control Systems

DTIC Science & Technology

1993-01-01

AD-A265 372 T N FEAP-TR-FE-93/05 REPORT January 1993 FACILITIES ENGINEERING APPLICATIONS PROGRAM Demonstration of Standard HVAC Single-Loop Digital...AND DATES COVERED January 1993 Final 4. TITLE AND SUBTITLE [5. FUNDING NUMBERS Demonstration of Standard HVAC Single-Loop Digital Control Systems FEAP...conditioning ( HVAC ) control systems provide guidance on designing and specifying standard HVAC control systems that use single-loop digital controllers

CRISPR-Cas9 Structures and Mechanisms.

PubMed

Jiang, Fuguo; Doudna, Jennifer A

2017-05-22

Many bacterial clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated (Cas) systems employ the dual RNA-guided DNA endonuclease Cas9 to defend against invading phages and conjugative plasmids by introducing site-specific double-stranded breaks in target DNA. Target recognition strictly requires the presence of a short protospacer adjacent motif (PAM) flanking the target site, and subsequent R-loop formation and strand scission are driven by complementary base pairing between the guide RNA and target DNA, Cas9-DNA interactions, and associated conformational changes. The use of CRISPR-Cas9 as an RNA-programmable DNA targeting and editing platform is simplified by a synthetic single-guide RNA (sgRNA) mimicking the natural dual trans-activating CRISPR RNA (tracrRNA)-CRISPR RNA (crRNA) structure. This review aims to provide an in-depth mechanistic and structural understanding of Cas9-mediated RNA-guided DNA targeting and cleavage. Molecular insights from biochemical and structural studies provide a framework for rational engineering aimed at altering catalytic function, guide RNA specificity, and PAM requirements and reducing off-target activity for the development of Cas9-based therapies against genetic diseases.

Completing the Feedback Loop: The Impact of Chlorophyll Data Assimilation on the Ocean State

NASA Technical Reports Server (NTRS)

Borovikov, Anna; Keppenne, Christian; Kovach, Robin

2015-01-01

In anticipation of the integration of a full biochemical model into the next generation GMAO coupled system, an intermediate solution has been implemented to estimate the penetration depth (1Kd_PAR) of ocean radiation based on the chlorophyll concentration. The chlorophyll is modeled as a tracer with sources-sinks coming from the assimilation of MODIS chlorophyll data. Two experiments were conducted with the coupled ocean-atmosphere model. In the first, climatological values of Kpar were used. In the second, retrieved daily chlorophyll concentrations were assimilated and Kd_PAR was derived according to Morel et al (2007). No other data was assimilated to isolate the effects of the time-evolving chlorophyll field. The daily MODIS Kd_PAR product was used to validate the skill of the penetration depth estimation and the MERRA-OCEAN re-analysis was used as a benchmark to study the sensitivity of the upper ocean heat content and vertical temperature distribution to the chlorophyll input. In the experiment with daily chlorophyll data assimilation, the penetration depth was estimated more accurately, especially in the tropics. As a result, the temperature bias of the model was reduced. A notably robust albeit small (2-5 percent) improvement was found across the equatorial Pacific ocean, which is a critical region for seasonal to inter-annual prediction.

Ionospheric modification - An initial report on artificially created equatorial Spread F

NASA Technical Reports Server (NTRS)

Ossakow, S. L.; Zalesak, S. T.; Mcdonald, B. E.

1978-01-01

A numerical simulation code for investigating equatorial Spread F in the collisional Rayleigh-Taylor regime is utilized to follow the evolution of artificial plasma density depletions injected into the bottomside nighttime equatorial F region. The 70 km diameter hole rapidly rises and steepens, forming plasma density enhancements at altitudes below the rising hole. The distribution of enhancements and depletions is similar to natural equatorial Spread F phenomena, except it occurs on a much faster time scale. These predictions warrant carrying out artificial injection experiments in the nighttime equatorial F region.

Dynamics of upwelling annual cycle in the equatorial Atlantic Ocean

NASA Astrophysics Data System (ADS)

Wang, Li-Chiao; Jin, Fei-Fei; Wu, Chau-Ron; Hsu, Huang-Hsiung

2017-04-01

The annual upwelling is an important component of the equatorial Atlantic annual cycle. A simple theory is proposed using the framework of Zebiak-Cane (ZC) ocean model for insights into the dynamics of the upwelling annual cycle. It is demonstrated that in the Atlantic equatorial region this upwelling is dominated by Ekman processing in the west, whereas in the east it is primarily owing to shoaling and deepening of the thermocline resulting from equatorial mass meridional recharge/discharge and zonal redistribution processes associated with wind-driven equatorial ocean waves. This wind-driven wave upwelling plays an important role in the development of the annual cycle in the sea surface temperature of the cold tongue in the eastern equatorial Atlantic.

Sensitivity of Pacific Cold Tongue and Double-ITCZ Bias to Convective Parameterization

NASA Astrophysics Data System (ADS)

Woelfle, M.; Bretherton, C. S.; Pritchard, M. S.; Yu, S.

2016-12-01

Many global climate models struggle to accurately simulate annual mean precipitation and sea surface temperature (SST) fields in the tropical Pacific basin. Precipitation biases are dominated by the double intertropical convergence zone (ITCZ) bias where models exhibit precipitation maxima straddling the equator while only a single Northern Hemispheric maximum exists in observations. The major SST bias is the enhancement of the equatorial cold tongue. A series of coupled model simulations are used to investigate the sensitivity of the bias development to convective parameterization. Model components are initialized independently prior to coupling to allow analysis of the transient response of the system directly following coupling. These experiments show precipitation and SST patterns to be highly sensitive to convective parameterization. Simulations in which the deep convective parameterization is disabled forcing all convection to be resolved by the shallow convection parameterization showed a degradation in both the cold tongue and double-ITCZ biases as precipitation becomes focused into off-equatorial regions of local SST maxima. Simulations using superparameterization in place of traditional cloud parameterizations showed a reduced cold tongue bias at the expense of additional precipitation biases. The equatorial SST responses to changes in convective parameterization are driven by changes in near equatorial zonal wind stress. The sensitivity of convection to SST is important in determining the precipitation and wind stress fields. However, differences in convective momentum transport also play a role. While no significant improvement is seen in these simulations of the double-ITCZ, the system's sensitivity to these changes reaffirm that improved convective parameterizations may provide an avenue for improving simulations of tropical Pacific precipitation and SST.

Expected first-order effects of a notional equatorial ring on Earth's night sky: a geometric consideration

NASA Astrophysics Data System (ADS)

Hancock, L. O.

2013-12-01

G. Jones (1856) was first to suggest that the Earth might have its own ring, noting that an Earth ring in the ecliptic plane would account for the latitude dependence of the zodiacal light. Jones's proposal was not accepted: it is difficult to see why the ecliptic would accumulate mass within the Earth-Moon system. Very recently, however, this objection has been mitigated by the discovery of Saturn's Phoebe ring: evidently, the plane of a planetary moon's orbit has now been observed as the site of mass accumulation. An adjustment of just a few degrees from ecliptic to the plane of the lunar orbit gives Jones's proposal the boost of an existing Solar System analogue, mysterious though the analogue is. J. O'Keefe (1980) was first to suggest that an Earth ring system could drive climate: a ring in the equatorial plane, waxing and waning in optical depth, could drive the alternation of Ice Age and interglacial climates. This driver would account for the observation that the Ice Age climate was mainly a difference in winter only. Could Earth have a ring system with one or both elements? Even if light and unstable, it would be important to assess, as it could drive climate change. Dust assessments have not discovered a ring system, but they do not cover low orbits well, nor rule out very small particles stringently. Yet tiny particles can be optically important. There are many difficulties with this hypothesis: Why have ground-based observers never identified an equatorial ring, which after all should be the brightest element of a ring system? Why should a ring system be made of very small particles only? The material must be constantly falling to Earth - where is it? Finally, can we believe in the level of lunar geological activity needed to sustain an Earth ring system? This presentation addresses only one issue: Could ground-based observers have seen but misidentified an equatorial ring? To support consideration of that question, herewith a simple geometric exercise: a schema of ring effects on the southern sky: (i) extinction of extra-terrestrial light between celestial equator and horizon; (ii) brightening of extra-terrestrial light via light-through-dust effects near the southern horizon; and (iii) reflection of sunlight from celestial equator to horizon. These effects would be modulated by season (due to ring self-shadowing) and hour of the night (because of Earth's shadow). We suggest that the expected effects are not "missing" at all - similar effects are well known to observers but are taken to be fully accounted for by skyglow, airglow and light pollution, qualitatively similar phenomena that certainly exist. We conclude that ground-based observers' non-identification of an equatorial ring is not a counter-indicator of a ring's existence. As far as this consideration goes, the question of an Earth ring system is open.

Correlations with operative anatomy of real time three-dimensional echocardiographic imaging of congenital aortic valvar stenosis.

PubMed

Sadagopan, Shankar N; Veldtman, Gruschen R; Sivaprakasam, Muthukumaran C; Keeton, Barry R; Gnanapragasam, James P; Salmon, Anthony P; Haw, Marcus P; Vettukattil, Joseph J

2006-10-01

To define the anatomic characteristics of the congenitally malformed and severely stenotic aortic valve using trans-thoracic real time three-dimensional echocardiography, and to compare and contrast this with the valvar morphology as seen at surgery. Prospective cross-sectional observational study. Tertiary centre for paediatric cardiology. All patients requiring aortic valvotomy between December 2003 and July 2004 were evaluated prior to surgery with three-dimensional echocardiography. Full volume loop images were acquired using the Phillips Sonos 7500 system. A single observer analysed the images using "Q lab 4.1" software. The details were then compared with operative findings. We identified 8 consecutive patients, with a median age of 16 weeks, ranging from 1 day to 11 years, with median weight of 7.22 kilograms, ranging from 2.78 to 22 kilograms. The measured diameter of the valvar orifice, and the number of leaflets identified, corresponded closely with surgical assessment. The sites of fusion of the leaflets were correctly identified by the echocardiographic imaging in all cases. Fusion between the right and non-coronary leaflets was identified in half the patients. Dysplasia was observed in 3 patients, with 1 patient having nodules and 2 shown to have excrescences. At surgery, nodules were excised, and excrescences were trimmed. The dysplastic changes correlated well with operative findings, though statistically not significant. We recommend trans-thoracic real time three-dimensional echocardiography for the assessment of the congenitally malformed aortic valve, particularly to identify sites of fusion between leaflets and to measure the orificial diameter. The definition of nodularity, and the prognosis of nodules based on the mode of intervention, will need a comparative study of patients submitted to balloon dilation as well as those undergoing surgical valvotomy.

In Vitro Measurement of Tissue Integrity during Saccular Aneurysm Embolizations for Simulator-Based Training

PubMed Central

Tercero, C.; Ikeda, S.; Ooe, K.; Fukuda, T.; Arai, F.; Negoro, M.; Takahashi, I.; Kwon, G.

2012-01-01

Summary In the domain of endovascular neurosurgery, the measurement of tissue integrity is needed for simulator-based training and for the development of new intravascular instruments and treatment techniques. In vitro evaluation of tissue manipulation can be achieved using photoelastic stress analysis and vasculature modeling with photoelastic materials. In this research we constructed two types of vasculature models of saccular aneurysms for differentiation of embolization techniques according to the respect for tissue integrity measurements based on the stress within the blood vessel model wall. In an aneurysm model with 5 mm dome diameter, embolization using MicroPlex 10 (Complex 1D, with 4 mm diameter loops), a maximum area of 3.97 mm2 with stress above 1 kPa was measured. This area increased to 5.50 mm2 when the dome was touched deliberately with the release mechanism of the coil, and to 4.87 mm2 for an embolization using Micrusphere, (Spherical 18 Platinum Coil). In a similar way trans-cell stent-assisted coil embolization was also compared to human blood pressure simulation using a model of a wide-necked saccular aneurysm with 7 mm diameter. The area with stress above 1kPa was below 1 mm2 for the pressure simulation and maximized at 3.79 mm2 during the trans-cell insertion of the micro-catheter and at 8.92 mm2 during the embolization. The presented results show that this measurement system is useful for identifying techniques compromising tissue integrity, comparing and studying coils and embolization techniques for a specific vasculature morphology and comparing their natural stress variations such as that produced by blood pressure. PMID:23217635

Foraminiferal faunal estimates of paleotemperature: Circumventing the no-analog problem yields cool ice age tropics

USGS Publications Warehouse

Mix, A.C.; Morey, A.E.; Pisias, N.G.; Hostetler, S.W.

1999-01-01

The sensitivity of the tropics to climate change, particularly the amplitude of glacial-to-interglacial changes in sea surface temperature (SST), is one of the great controversies in paleoclimatology. Here we reassess faunal estimates of ice age SSTs, focusing on the problem of no-analog planktonic foraminiferal assemblages in the equatorial oceans that confounds both classical transfer function and modern analog methods. A new calibration strategy developed here, which uses past variability of species to define robust faunal assemblages, solves the no-analog problem and reveals ice age cooling of 5??to 6??C in the equatorial current systems of the Atlantic and eastern Pacific Oceans. Classical transfer functions underestimated temperature changes in some areas of the tropical oceans because core-top assemblages misrepresented the ice age faunal assemblages. Our finding is consistent with some geochemical estimates and model predictions of greater ice age cooling in the tropics than was inferred by Climate: Long-Range Investigation, Mapping, and Prediction (CLIMAP) [1981] and thus may help to resolve a long-standing controversy. Our new foraminiferal transfer function suggests that such cooling was limited to the equatorial current systems, however, and supports CLIMAP's inference of stability of the subtropical gyre centers.

Equatorial disc and dawn-dusk currents in the frontside magnetosphere of Jupiter - Pioneer 10 and 11

NASA Technical Reports Server (NTRS)

Jones, D. E.; Thomas, B. T.; Melville, J. G., II

1981-01-01

Observations by Pioneer 10 and 11 show that the strongest azimuthal fields are observed near the dawn meridian (Pioneer 10) while the weakest occur near the noon meridian (Pioneer 11), suggesting a strong local time dependence for the corresponding radial current system. Modeling studies of the radial component of the field observed by both spacecraft suggest that the corresponding azimuthal current system must also be a strong function of local time. Both the azimuthal and the radial field component signatures exhibit sharp dips and reversals, requiring thin radial and azimuthal current systems. There is also a suggestion that these two current systems either are interacting or are due, at least in part, to the same current. It is suggested that a plausible current model consists of the superposition of a thin, local-time-independent azimuthal current system plus the equatorial portion of a tail-like current system that extends into the dayside magnetosphere.

The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR-Cas subtype III-Bv system.

PubMed

Behler, Juliane; Sharma, Kundan; Reimann, Viktoria; Wilde, Annegret; Urlaub, Henning; Hess, Wolfgang R

2018-03-01

Specialized RNA endonucleases for the maturation of clustered regularly interspaced short palindromic repeat (CRISPR)-derived RNAs (crRNAs) are critical in CRISPR-CRISPR-associated protein (Cas) defence mechanisms. The Cas6 and Cas5d enzymes are the RNA endonucleases in many class 1 CRISPR-Cas systems. In some class 2 systems, maturation and effector functions are combined within a single enzyme or maturation proceeds through the combined actions of RNase III and trans-activating CRISPR RNAs (tracrRNAs). Three separate CRISPR-Cas systems exist in the cyanobacterium Synechocystis sp. PCC 6803. Whereas Cas6-type enzymes act in two of these systems, the third, which is classified as subtype III-B variant (III-Bv), lacks cas6 homologues. Instead, the maturation of crRNAs proceeds through the activity of endoribonuclease E, leaving unusual 13- and 14-nucleotide-long 5'-handles. Overexpression of RNase E leads to overaccumulation and knock-down to the reduced accumulation of crRNAs in vivo, suggesting that RNase E is the limiting factor for CRISPR complex formation. Recognition by RNase E depends on a stem-loop in the CRISPR repeat, whereas base substitutions at the cleavage site trigger the appearance of secondary products, consistent with a two-step recognition and cleavage mechanism. These results suggest the adaptation of an otherwise very conserved housekeeping enzyme to accommodate new substrates and illuminate the impressive plasticity of CRISPR-Cas systems that enables them to function in particular genomic environments.

SIMULTANEOUS MULTIWAVELENGTH OBSERVATIONS OF MAGNETIC ACTIVITY IN ULTRACOOL DWARFS. IV. THE ACTIVE, YOUNG BINARY NLTT 33370 AB (= 2MASS J13142039+1320011)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Williams, P. K. G.; Berger, E.; Irwin, J.

We present multi-epoch simultaneous radio, optical, Hα, UV, and X-ray observations of the active, young, low-mass binary NLTT 33370 AB (blended spectral type M7e). This system is remarkable for its extreme levels of magnetic activity: it is the most radio-luminous ultracool dwarf (UCD) known, and here we show that it is also one of the most X-ray luminous UCDs known. We detect the system in all bands and find a complex phenomenology of both flaring and periodic variability. Analysis of the optical light curve reveals the simultaneous presence of two periodicities, 3.7859 ± 0.0001 and 3.7130 ± 0.0002 hr. While these differmore » by only ∼2%, studies of differential rotation in the UCD regime suggest that it cannot be responsible for the two signals. The system's radio emission consists of at least three components: rapid 100% polarized flares, bright emission modulating periodically in phase with the optical emission, and an additional periodic component that appears only in the 2013 observational campaign. We interpret the last of these as a gyrosynchrotron feature associated with large-scale magnetic fields and a cool, equatorial plasma torus. However, the persistent rapid flares at all rotational phases imply that small-scale magnetic loops are also present and reconnect nearly continuously. We present a spectral energy distribution of the blended system spanning more than 9 orders of magnitude in wavelength. The significant magnetism present in NLTT 33370 AB will affect its fundamental parameters, with the components' radii and temperatures potentially altered by ∼+20% and ∼–10%, respectively. Finally, we suggest spatially resolved observations that could clarify many aspects of this system's nature.« less

Characteristics of Equatorial and Low-Latitude Plasma Irregularities as Investigated Using a Meridional Chain of Radio Experiments Over India

NASA Astrophysics Data System (ADS)

Sripathi, S.; Sreekumar, Sreeba; Banola, S.

2018-05-01

The characteristics of equatorial and low-latitude plasma irregularities are studied using a meridional chain of ionosondes located at Tirunelveli, Hyderabad, and Allahabad and Global Positioning System (GPS) receivers located at Tirunelveli, Mumbai, and Nagpur during the year 2015. The observations suggest that while stronger and longer duration of equatorial spread F irregularities occur in the postsunset sector during equinoxes and winter, they occur mostly in the postmidnight sector during summer, while being weaker in strength and shorter in duration. Further, the postsunset spread F occurs first at the equator followed by their occurrence at low latitudes during equinoxes and winter, while the postmidnight spread F during summer are found to be stronger and earlier at low latitudes followed by their occurrence at the equator. While plasma irregularities are observed by both the ionosondes and GPS receivers during both equinoxes and winter, it is observed mostly by the ionosondes during summer. The results further strengthen the view that while postsunset spread F in equinoxes and winter are generated by the equatorial processes, postmidnight spread F in the summer may be linked to the nonequatorial processes. The results also reemphasize the asymmetric distribution of plasma irregularities or scintillations during equinoxes wherein vernal (autumn) equinox shows more intense plasma irregularities than autumn (vernal) equinox during certain years. Also, using a larger data set of simultaneous GPS and ionosonde observations, the relationship of prereversal enhancement and strength of L-band scintillations with solar flux, Kp index, and equatorial electrojet strength are examined.

The Role of the Indian Ocean Sector for Prediction of the Coupled Indo-Pacific System: Impact of Atmospheric Coupling

NASA Technical Reports Server (NTRS)

Hackert, E. C.; Busalacchi, A. J.; Carton, J.; Murtugudde, R.; Arkin, P.; Evans, M. N.

2017-01-01

Indian Ocean (IO) dynamics impact ENSO predictability by influencing wind and precipitation anomalies in the Pacific. To test if the upstream influence of the IO improves ENSO validation statistics, a combination of forced ocean, atmosphere, and coupled models are utilized. In one experiment, the full tropical Indo-Pacific region atmosphere is forced by observed interannual SST anomalies. In the other, the IO is forced by climatological SST. Differences between these two forced atmospheric model experiments spotlight a much richer wind response pattern in the Pacific than previous studies that used idealized forcing and simple linear atmospheric models. Weak westerlies are found near the equator similar to earlier literature. However, at initialization strong easterlies between 30 deg. S to 10 deg. S and 0 deg. N to 25 deg. N and equatorial convergence of the meridional winds across the entire Pacific are unique findings from this paper. The large-scale equatorial divergence west of the dateline and northeasterly-to-northwesterly cross-equatorial flow converging on the equator east of the dateline in the Pacific are generated from interannual IO SST coupling. In addition, off-equatorial downwelling curl impacts large-scale oceanic waves (i.e., Rossby waves reflect as western boundary Kelvin waves). After 3 months, these downwelling equatorial Kelvin waves propagate across the Pacific and strengthen the NINO3 SST. Eventually Bjerknes feedbacks take hold in the eastern Pacific which allows this warm anomaly to grow. Coupled forecasts for NINO3 SST anomalies for 1993-2014 demonstrate that including interannual IO forcing significantly improves predictions for 3-9 month lead times.

The role of the Indian Ocean sector for prediction of the coupled Indo-Pacific system: Impact of atmospheric coupling

NASA Astrophysics Data System (ADS)

Hackert, E. C.; Busalacchi, A. J.; Carton, J.; Murtugudde, R.; Arkin, P.; Evans, M. N.

2017-04-01

Indian Ocean (IO) dynamics impact ENSO predictability by influencing wind and precipitation anomalies in the Pacific. To test if the upstream influence of the IO improves ENSO validation statistics, a combination of forced ocean, atmosphere, and coupled models are utilized. In one experiment, the full tropical Indo-Pacific region atmosphere is forced by observed interannual SST anomalies. In the other, the IO is forced by climatological SST. Differences between these two forced atmospheric model experiments spotlight a much richer wind response pattern in the Pacific than previous studies that used idealized forcing and simple linear atmospheric models. Weak westerlies are found near the equator similar to earlier literature. However, at initialization strong easterlies between 30°S-10°S and 0°N-25°N and equatorial convergence of the meridional winds across the entire Pacific are unique findings from this paper. The large-scale equatorial divergence west of the dateline and northeasterly-to-northwesterly cross-equatorial flow converging on the equator east of the dateline in the Pacific are generated from interannual IO SST coupling. In addition, off-equatorial downwelling curl impacts large-scale oceanic waves (i.e., Rossby waves reflect as western boundary Kelvin waves). After 3 months, these downwelling equatorial Kelvin waves propagate across the Pacific and strengthen the NINO3 SST. Eventually Bjerknes feedbacks take hold in the eastern Pacific which allows this warm anomaly to grow. Coupled forecasts for NINO3 SST anomalies for 1993-2014 demonstrate that including interannual IO forcing significantly improves predictions for 3-9 month lead times.

Neodymium isotope ratios in fish debris as a tracer for a low oxygen water mass in the equatorial Pacific across the last glacial termination.

NASA Astrophysics Data System (ADS)

Reimi Sipala, M. A.; Marcantonio, F.

2017-12-01

The deep ocean has long been suggested as a potential sink of carbon during the LGM, providing storage for the drawdown of atmospheric CO2 observed in the climate record. However, the exact location, origin and pathway of this respired carbon pool remains largely unconstrained. The equatorial Pacific is an important player in the ocean biogeochemical cycling of carbon, with many researchers focusing on the changes in iron-limited systems and potential micronutrient supply changes throughout the Pleistocene glaciation. Here we attempt to isolate the role of deep water circulation changes that may be associated with changing bottom water oxygen conditions in the Central Equatorial Pacific during the last deglaciation. We measure the variability of the Nd isotopic composition of fish debris from three sites in the Central Equatorial Pacific (CEP) along a meridional transect at approximately 160° W -- 0° 28' N (ML1208-17PC), 4° 41' N (ML1208-31BB), and 7 ° 2'N (ML1208-31BB). Nd isotopic values in fish debris reflect the Nd isotopic composition of bottom water at the time of deposition and are insensitive to moderate changes in redox conditions or pore water oxygen levels. Nd isotope ratios can, therefore, be used as an effective deep-ocean water mass tracer. This work attempts to illuminate our current understanding of changes in bottom water oxygenation conditions throughout the Equatorial Pacific over the past 25 kyr. High authigenic U concentrations during peak glacial conditions have been attributed to deep-water suboxic conditions potentially associated with increased respired carbon storage. However, it is still unclear if these changes originate in the Southern Ocean, and propagate to the equatorial Pacific through an increased in penetration of Southern Ocean Intermediate water, or if they represent a change in the efficiency of the biological pump, permitting a drawdown of oxygen in bottom water without increased nutrient availability.

Levels of trans fats in diets consumed in developing economies.

PubMed

Butt, Masood Sadiq; Sultan, Muhammad Tauseef

2009-01-01

Cardiovascular complications are a leading cause of mortality worldwide, and dietary patterns and lifestyle are key factors responsible for their progression. Sedentary lifestyle and transient changes in nutrition have led to drastic increases in such maladies during the last few decades, and dietary changes are significant, as they are coupled with high fat intake, especially trans fats. In developed countries, legislations and monitoring systems have resulted in reduced consumption of these metabolites. The developing world, especially South Asia, is also facing the menace of trans fats; lack of governmental interest and ignorance among consumers are the main reasons. In these regions, the use of hydrogenated vegetable oil (ghee) and shortening in deep-fat frying of culinary items, such as samosa, paratha, bhatura, poori, and tikkies, results in increased consumption of trans fats. Research investigations and cohort studies showed a positive correlation between consumption of trans fats and cardiovascular disorders. In this article, trans fats intake and its level in different products available in developing countries, particularly in South Asia, were reviewed along with information regarding processes involved in the production and possible reduction of trans fats.

ARC-1979-A79-7071

NASA Image and Video Library

1979-07-06

P-21736 BW This Voyager 2 pictures shows the Great Red Spot and the south equatorial belt extending into the equatorial region. At right is an interchange of material between the south equatorial belt and the equatorial zone. The clouds in this zone are more diffuse and do not display the structures seen in other locations. Considerable structure is evident within the Great Red Spot.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Disselkamp, Robert S.; Denslow, Kayte M.; Hart, Todd R.

We have studied the effect of cavitating ultrasound on the heterogeneous aqueous hydrogenation of cis-2-buten-1-ol (C4 olefin) and cis-2-penten-1-ol (C5 olefin) on Pd-black to form the trans-olefins (trans-2-buten-1-ol and trans-2-penten-1-ol) and saturated alcohols (1-butanol and 1-pentanol, respectively). Silent (and magnetically stirred) experiments served as control experiments. As described in an earlier publication by our group, we have added an inert dopant, 1-propanol, in the reaction mixture to ensure the rapid onset of cavitation in the ultrasound-assisted reactions that can lead to altered selectivity compared to silent reaction systems [R.S. Disselkamp, Ya-Huei Chin, C.H.F. Peden, J. Catal. 227 (2004) 552]. Themore » motivation for this study is to examine whether cavitating ultrasound can reduce the [trans-olefin/saturated alcohol] molar ratio during the course of the reaction. This could have practical application in that it may offer an alternative processing methodology of synthesizing healthier edible seed oils by reducing trans-fat content.We have observed that cavitating ultrasound results in a [(trans-olefin/saturated alcohol)ultrasound/(trans-olefin/saturated alcohol)silent] ratio quantity less than 0.5 at the reaction mid-point for both the C4 and C5 olefin systems. This indicates that ultrasound reduces trans-olefin production compared to the silent control experiment. Furthermore, there is an added 30% reduction for the C5 versus C4 olefin compounds again at reaction mid-point. We attribute differences in the ratio quantity as a moment of inertia effect. In principle, the C4 versus C5 olefins has a {approx}52% increase in moment of inertia about C2 C3 double bond slowing isomerization. Since seed oils are C18 multiple cis-olefins and have a moment of inertia even greater than our C5 olefin here, our study suggests that even a greater reduction in trans-olefin content may occur for partial hydrogenation of C18 seed oils.« less

Jupiter Equatorial Region in a Methane Band Time Set 1

NASA Image and Video Library

1998-03-06

Mosaic of an equatorial "hotspot" on Jupiter at 889 nanometers (nm). The mosaic covers an area of 34,000 kilometers by 11,000 kilometers. Light at 889 nm is strongly absorbed by atmospheric methane. This image shows the features of a hazy cloud layer tens of kilometers above Jupiter's main visible cloud deck. This haze varies in height but appears to be present over the entire region. Small patches of very bright clouds may be similar to terrestrial thunderstorms. The dark region near the center of the mosaic is an equatorial "hotspot" similar to the Galileo Probe entry site. These features are holes in the bright, reflective, equatorial cloud layer where warmer thermal emission from Jupiter's deep atmosphere can pass through. The circulation patterns observed here along with the composition measurements from the Galileo Probe suggest that dry air may be converging and sinking over these regions, maintaining their cloud-free appearance. North is at the top. The mosaic covers latitudes 1 to 10 degrees and is centered at longitude 336 degrees West. The smallest resolved features are tens of kilometers in size. These images were taken on December 17, 1996, at a range of 1.5 million kilometers by the Solid State Imaging system aboard NASA's Galileo spacecraft. http://photojournal.jpl.nasa.gov/catalog/PIA01200

Feasibility of anomaly detection and characterization using trans-admittance mammography with 60 × 60 electrode array

NASA Astrophysics Data System (ADS)

Zhao, Mingkang; Wi, Hun; Lee, Eun Jung; Woo, Eung Je; In Oh, Tong

2014-10-01

Electrical impedance imaging has the potential to detect an early stage of breast cancer due to higher admittivity values compared with those of normal breast tissues. The tumor size and extent of axillary lymph node involvement are important parameters to evaluate the breast cancer survival rate. Additionally, the anomaly characterization is required to distinguish a malignant tumor from a benign tumor. In order to overcome the limitation of breast cancer detection using impedance measurement probes, we developed the high density trans-admittance mammography (TAM) system with 60 × 60 electrode array and produced trans-admittance maps obtained at several frequency pairs. We applied the anomaly detection algorithm to the high density TAM system for estimating the volume and position of breast tumor. We tested four different sizes of anomaly with three different conductivity contrasts at four different depths. From multifrequency trans-admittance maps, we can readily observe the transversal position and estimate its volume and depth. Specially, the depth estimated values were obtained accurately, which were independent to the size and conductivity contrast when applying the new formula using Laplacian of trans-admittance map. The volume estimation was dependent on the conductivity contrast between anomaly and background in the breast phantom. We characterized two testing anomalies using frequency difference trans-admittance data to eliminate the dependency of anomaly position and size. We confirmed the anomaly detection and characterization algorithm with the high density TAM system on bovine breast tissue. Both results showed the feasibility of detecting the size and position of anomaly and tissue characterization for screening the breast cancer.

Dynamics of tropical oxygen minium zones (OMZ): The role of vertical mixing and eddy stirring in ventilating the OMZ in the tropical Atlantic

NASA Astrophysics Data System (ADS)

Visbeck, M.; Banyte, D.; Brandt, P.; Dengler, M.; Fischer, T.; Karstensen, J.; Krahmann, G.; Tanhua, T. S.; Stramma, L.

2013-12-01

Equatorial Dynamics provide an essential influence on the ventilation pathways of well oxygenated surface water on their route to tropical oxygen minimum zones (OMZ). The large scale wind driven circulation shield OMZs from the direct ventilation pathways. They are located in the so called ';shadow zones' equator ward of the subtropical gyres. From what is known most of the oxygen is supplied via pathways from the western boundary modulated by the complex zonal equatorial current system and marginally by vertical mixing. What was less clear is which of the possible pathways are most effective in transporting dissolved oxygen towards the OMZ. A collaborative research program focused on the dynamics of oxygen minimum zones, called SFB754 "Climate - Biogeochemistry Interactions in the Tropical Ocean", allowed us to conduct two ocean tracer release experiments to investigate the vertical and horizontal mixing rates and associated oxygen transports. Specifically we report on the first deliberate tracer release experiment (GUTRE, Guinea Upwelling Tracer Release Experiment) in the tropical northeast Atlantic carried out in order to determine the diapycnal diffusivity coefficient in the upper layer of the OMZ. A tracer (CF3SF5) was injected in spring of 2008 and subsequently measured during three designated tracer survey cruises until the end of 2010. We found that, generally, the diffusivity is larger than expected for low latitudes and similar in magnitude to what has previously been experimentally determined in the Canary Basin. When combining the tracer study with estimates of diapycnal mixing based on microstructure profiling and a newly developed method using ship board ADCPs we were able to compute the vertical oxygen flux and its divergence for the OMZ. To our surprise, the vertical flux of oxygen by diapycnal mixing provides about 30% of the total ventilation. The estimate was derived from the simple advection-diffusion model taking into account moored and ship based velocity observations of the equatorial current systems along 23°W in the tropical Atlantic. However, the advective pathways are less certain and possibly more variable. Firstly, the strength of lateral eddy stirring and the role in oxygen transport is less well known, and is the focus of the ongoing second tracer release experiment (OSTRE, Oxygen Supply Tracer Release Experiment). Secondly, the analysis of historical data from the equatorial regime suggests that the observed decline in dissolved oxygen in the tropical North Atlantic might in part be a consequence of reduced horizontal ventilation by equatorial intermediate current systems. The uncertainty of the long-term variability of the circulation in the equatorial systems and additional uncertainty in the biogeochemical consumption rates provide a challenge for estimates of the future of the OMZ regimes. Model prediction of future oxygen changes depend on the models ability to reproduce the observed oxygen ventilation pathways and processes, which might limit the prediction's accuracy.

System design and analysis of the trans-critical carbon-dioxide automotive air-conditioning system.

PubMed

Mu, Jing-Yang; Chen, Jiang-Ping; Chen, Zhi-Jiu

2003-01-01

As an environmentally harmless and feasible alternate refrigerant, CO2 has attracted worldwide attention, especially in the area of automobile air-conditioning (AAC). The thermal property of CO2 and its trans-critical refrigeration cycle is very different from that of the traditional CFC or HCFC system. The detailed process of CO2 system thermal cycle design and optimization is described in this paper. System prototype and performance test bench were developed to analyze the performance of the CO2 AAC system.

A copper(II) paddle-wheel structure of tranexamic acid: di-chloro-tetra-kis-[μ-4-(ammonio-meth-yl)cyclo-hexane-1-carboxyl-ato-O,O']dicopper(II) dichloride hexa-hydrate.

PubMed

Altaf, Muhammad; Stoeckli-Evans, Helen

2017-10-01

Tranexamic acid [systematic name: trans -4-(amino-meth-yl)cyclo-hexane-1-carb-oxy-lic acid], is an anti-fibrinolytic amino acid that exists as a zwitterion [ trans -4-(ammonio-meth-yl)cyclo-hexane-1-carboxyl-ate] in the solid state. Its reaction with copper chloride leads to the formation of a compound with a copper(II) paddle-wheel structure that crystallizes as a hexa-hydrate, [Cu 2 Cl 2 (C 8 H 15 NO 2 ) 4 ] 2+ ·2Cl - ·6H 2 O. The asymmetric unit is composed of a copper(II) cation, two zwitterionic tranexamic acid units, a coordinating Cl - anion and a free Cl - anion, together with three water mol-ecules of crystallization. The whole structure is generated by inversion symmetry, with the Cu⋯Cu axle of the paddle-wheel dication being located about a center of symmetry. The cyclo-hexane rings of the zwitterionic tranexamic acid units have chair conformations. The carboxyl-ate groups that bridge the two copper(II) cations are inclined to one another by 88.4 (8)°. The copper(II) cation is ligated by four carboxyl-ate O atoms in the equatorial plane and by a Cl - ion in the axial position. Hence, it has a fivefold O 4 Cl coordination sphere with a perfect square-pyramidal geometry and a τ 5 index of zero. In the crystal, the paddle-wheel dications are linked by a series of N-H⋯Cl hydrogen bonds, involving the coordinating and free Cl - ions, forming a three-dimensional network. This network is strengthened by a series of N-H⋯O water , O water -H⋯Cl and O water -H⋯O hydrogen bonds.

Trans-pacific glacial response to the Antarctic Cold Reversal in the southern mid-latitudes

NASA Astrophysics Data System (ADS)

Sagredo, Esteban A.; Kaplan, Michael R.; Araya, Paola S.; Lowell, Thomas V.; Aravena, Juan C.; Moreno, Patricio I.; Kelly, Meredith A.; Schaefer, Joerg M.

2018-05-01

Elucidating the timing and regional extent of abrupt climate events during the last glacial-interglacial transition (∼18-11.5 ka) is critical for identifying spatial patterns and mechanisms responsible for large-magnitude climate events. The record of climate change in the Southern Hemisphere during this time period, however, remains scarce and unevenly distributed. We present new geomorphic, chronological, and equilibrium line altitude (ELA) data from a climatically sensitive mountain glacier at Monte San Lorenzo (47°S), Central Patagonia. Twenty-four new cosmogenic 10Be exposure ages from moraines provide a comprehensive glacial record in the mid-latitudes of South America, which constrain the timing, spatial extent and magnitude of glacial fluctuations during the Antarctic Cold Reversal (ACR, ∼14.5-12.9 ka). Río Tranquilo glacier advanced and reached a maximum extent at 13.9 ± 0.7 ka. Three additional inboard moraines afford statistically similar ages, indicating repeated glacier expansions or marginal fluctuations over the ACR. Our record represents the northernmost robust evidence of glacial fluctuations during the ACR in southern South America, documenting not only the timing of the ACR maximum, but also the sequence of glacier changes within this climate event. Based on ELA reconstructions, we estimate a cooling of >1.6-1.8 °C at the peak of the ACR. The Río Tranquilo record along with existing glacial reconstructions from New Zealand (43°S) and paleovegetation records from northwestern (41°S) and central-west (45°S) Patagonia, suggest an uniform trans-Pacific glacier-climate response to an ACR trigger across the southern mid-latitudes. We posit that the equatorial migration of the southern westerly winds provides an adequate mechanism to propagate a common ACR signal across the Southern Hemisphere.

Montana TranPlan 21 annual report : system characteristics overview policy goals and actions status

DOT National Transportation Integrated Search

1997-07-01

TranPlan 21 was Montana's first statewide multimodal transportation plan. The plan, published in : February of 1995, identified the most pressing transportation issues facing Montana, evaluated future : transportation concerns, and established the po...

Model-based assessment of a Northwestern Tropical Pacific moored array to monitor intraseasonal variability

NASA Astrophysics Data System (ADS)

Liu, Danian; Zhu, Jiang; Shu, Yeqiang; Wang, Dongxiao; Wang, Weiqiang; Cai, Shuqun

2018-06-01

The Northwestern Tropical Pacific Ocean (NWTPO) moorings observing system, including 15 moorings, was established in 2013 to provide velocity profile data. Observing system simulation experiments (OSSEs) were carried out to assess the ability of the observation system to monitor intraseasonal variability in a pilot study, where ideal "mooring-observed" velocity was assimilated using Ensemble Optimal Interpolation (EnOI) based on the Regional Oceanic Modeling System (ROMS). Because errors between the control and "nature" runs have a mesoscale structure, a random ensemble derived from 20-90-day bandpass-filtered nine-year model outputs is proved to be more appropriate for the NWTPO mooring array assimilation than a random ensemble derived from a 30-day running mean. The simulation of the intraseasonal currents in the North Equatorial Current (NEC), North Equatorial Countercurrent (NECC), and Equatorial Undercurrent (EUC) areas can be improved by assimilating velocity profiles using a 20-90-day bandpass-filtered ensemble. The root mean square errors (RMSEs) of the intraseasonal zonal (U) and meridional velocity (V) above 500 m depth within the study area (between 0°N-18°N and 122°E-147°E) were reduced by 15.4% and 16.9%, respectively. Improvements in the downstream area of the NEC moorings transect were optimum where the RMSEs of the intraseasonal velocities above 500 m were reduced by more than 30%. Assimilating velocity profiles can have a positive impact on the simulation and forecast of thermohaline structure and sea level anomalies in the ocean.

The Oral Bioavailability of Trans-Resveratrol from a Grapevine-Shoot Extract in Healthy Humans is Significantly Increased by Micellar Solubilization.

PubMed

Calvo-Castro, Laura A; Schiborr, Christina; David, Franziska; Ehrt, Heidi; Voggel, Jenny; Sus, Nadine; Behnam, Dariush; Bosy-Westphal, Anja; Frank, Jan

2018-05-01

Grapevine-shoot extract Vineatrol30 contains abundant resveratrol monomers and oligomers with health-promoting potential. However, the oral bioavailability of these compounds in humans is low (˂1-2%). The aim of this study was to improve the oral bioavailability of resveratrol from vineatrol by micellar solubilization. Twelve healthy volunteers (six women, six men) randomly ingested a single dose of 500 mg vineatrol (30 mg trans-resveratrol, 75 mg trans-ε-viniferin) as native powder or liquid micelles. Plasma and urine were collected at baseline and over 24 h after intake. Resveratrol and viniferin were analyzed by HPLC. The area under the plasma concentration-time curve (AUC) and mean maximum plasma trans-resveratrol concentrations were 5.0-fold and 10.6-fold higher, respectively, after micellar supplementation relative to the native powder. However, no detectable amounts of trans-ε-viniferin were found in either plasma or urine. The transepithelial permeability of trans-resveratrol and trans-ε-viniferin across differentiated Caco-2 monolayers was consistent to the absorbed fractions in vivo. The oral bioavailability of trans-resveratrol from the grapevine-shoot extract Vineatrol30 was significantly increased using a liquid micellar formulation, without any treatment-related adverse effects, making it a suitable system for improved supplementation of trans-resveratrol. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

A Characterization of t/s-Diagnosability and Sequential t-Diagnosability in Designs

DTIC Science & Technology

1990-10-01

41 151 161 171 181 r91 1101 REFERENCES K.-Y. Chwa and S. L. Hakimi, “On fault identification in diagnosable systems,” ZEEE Tmns. Comput...1975, pp. 167-170. S. L. Hakimi and A. T. Amin, “Characterization of the connection assignment problem of diagnosable systems,” ZEEE Trans. Comput...S. Karunanithi and A. D. Friedman, “Analysis of digital systems using a new measure of system diagnosis,” ZEEE Trans. Cornput., vol. C- A

Effective Detection of Low-luminosity GEO Objects Using Population and Motion Predictions

DTIC Science & Technology

2012-01-01

more assumptions made on the time, and then tracks all the points where most fragments will be in geocentric equatorial inertial coordinates over time...population. A couple of candidate points in geocentric equatorial inertial coordinates can be selected with consideration that bright stars will not be... geocentric equatorial inertial coordinates. Third, motion of fragments passing through the specified single point in geocentric equatorial

EUV Waves Driven by the Sudden Expansion of Transequatorial Loops Caused by Coronal Jets

NASA Astrophysics Data System (ADS)

Shen, Yuandeng; Tang, Zehao; Miao, Yuhu; Su, Jiangtao; Liu, Yu

2018-06-01

We present two events to study the driving mechanism of extreme-ultraviolet (EUV) waves that are not associated with coronal mass ejections (CMEs), by using high-resolution observations taken by the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory. Observational results indicate that the observed EUV waves were accompanied by flares and coronal jets, but not the CMEs that were regarded as drivers of most EUV waves in previous studies. In the first case, it is observed that a coronal jet is ejected along a transequatorial loop system at a plane-of-the-sky (POS) speed of 335 ± 22 km s{}-1; in the meantime, an arc-shaped EUV wave appeared on the eastern side of the loop system. In addition, the EUV wave further interacted with another interconnecting loop system and launched a fast propagating (QFP) magnetosonic wave along the loop system, which had a period of 200 s and a speed of 388 ± 65 km s{}-1, respectively. In the second case, we observed a coronal jet that ejected at a POS speed of 282 ± 44 km s{}-1 along a transequatorial loop system as well as the generation of bright EUV waves on the eastern side of the loop system. Based on the observational results, we propose that the observed EUV waves on the eastern side of the transequatorial loop systems are fast-mode magnetosonic waves and that they are driven by the sudden lateral expansion of the transequatorial loop systems due to the direct impingement of the associated coronal jets, while the QFP wave in the fist case formed due to the dispersive evolution of the disturbance caused by the interaction between the EUV wave and the interconnecting coronal loops. It is noted that EUV waves driven by sudden loop expansions have shorter lifetimes than those driven by CMEs.

PyTranSpot: A tool for multiband light curve modeling of planetary transits and stellar spots

NASA Astrophysics Data System (ADS)

Juvan, Ines G.; Lendl, M.; Cubillos, P. E.; Fossati, L.; Tregloan-Reed, J.; Lammer, H.; Guenther, E. W.; Hanslmeier, A.

2018-02-01

Several studies have shown that stellar activity features, such as occulted and non-occulted starspots, can affect the measurement of transit parameters biasing studies of transit timing variations and transmission spectra. We present PyTranSpot, which we designed to model multiband transit light curves showing starspot anomalies, inferring both transit and spot parameters. The code follows a pixellation approach to model the star with its corresponding limb darkening, spots, and transiting planet on a two dimensional Cartesian coordinate grid. We combine PyTranSpot with a Markov chain Monte Carlo framework to study and derive exoplanet transmission spectra, which provides statistically robust values for the physical properties and uncertainties of a transiting star-planet system. We validate PyTranSpot's performance by analyzing eleven synthetic light curves of four different star-planet systems and 20 transit light curves of the well-studied WASP-41b system. We also investigate the impact of starspots on transit parameters and derive wavelength dependent transit depth values for WASP-41b covering a range of 6200-9200 Å, indicating a flat transmission spectrum.

Reliability Analysis of Main-axis Control System of the Equatorial Antarctica Astronomical Telescope Based on Fault Tree

NASA Astrophysics Data System (ADS)

LI, Y.; Yang, S. H.

2017-05-01

The Antarctica astronomical telescopes work chronically on the top of the unattended South Pole, and they have only one chance to maintain every year. Due to the complexity of the optical, mechanical, and electrical systems, the telescopes are hard to be maintained and need multi-tasker expedition teams, which means an excessive awareness is essential for the reliability of the Antarctica telescopes. Based on the fault mechanism and fault mode of the main-axis control system for the equatorial Antarctica astronomical telescope AST3-3 (Antarctic Schmidt Telescopes 3-3), the method of fault tree analysis is introduced in this article, and we obtains the importance degree of the top event from the importance degree of the bottom event structure. From the above results, the hidden problems and weak links can be effectively found out, which will indicate the direction for promoting the stability of the system and optimizing the design of the system.

Mechanical-thermal noise in drive-mode of a silicon micro-gyroscope.

PubMed

Yang, Bo; Wang, Shourong; Li, Hongsheng; Zhou, Bailing

2009-01-01

A new closed-loop drive scheme which decouples the phase and the gain of the closed-loop driving system was designed in a Silicon Micro-Gyroscope (SMG). We deduce the system model of closed-loop driving and use stochastic averaging to obtain an approximate "slow" system that clarifies the effect of thermal noise. The effects of mechanical-thermal noise on the driving performance of the SMG, including the noise spectral density of the driving amplitude and frequency, are derived. By calculating and comparing the noise amplitude due to thermal noise both in the opened-loop driving and in the closed-loop driving, we find that the closed-loop driving does not reduce the RMS noise amplitude. We observe that the RMS noise frequency can be reduced by increasing the quality factor and the drive amplitude in the closed-loop driving system. The experiment and simulation validate the feasibility of closed-loop driving and confirm the validity of the averaged equation and its stablility criterion. The experiment and simulation results indicate the electrical noise of closed-loop driving circuitry is bigger than the mechanical-thermal noise and as the driving mass decreases, the mechanical-thermal noise may get bigger than the electrical noise of the closed-loop driving circuitry.

Vertical transport of Kelut volcanic stratospheric aerosols observed by the equatorial lidar and the Equatorial Atmosphere Radar

NASA Astrophysics Data System (ADS)

Nagasawa, C.; Abo, M.; Shibata, Y.

2017-12-01

The transport of substance between stratosphere and troposphere in the equatorial region makes an impact to the global climate change, but it has a lot of unknown behaviors. We have performed the lidar observations for survey of atmospheric structure of troposphere, stratosphere, and mesosphere over Kototabang (0.2S, 100.3E), Indonesia in the equatorial region since 2004. Kelut volcano (7.9S, 112.3E) in the Java island of Indonesia erupted on 13 February 2014. The CALIOP observed that the eruption cloud reached 26km above sea level in the tropical stratosphere, but most of the plume remained at 19-20 km over the tropopause. By CALIOP data analysis, aerosol clouds spread in the longitude direction with the lapse of time and arrived at equator in 5 days. After aerosol clouds reached equator, they moved towards the east along the equator by strong eastward equatorial wind of QBO. In June 2014 (4 months after the eruption), aerosol transport from the stratosphere to the troposphere were observed by the polarization lidar at Kototabang. At the same time, we can clearly see down phase structure of vertical wind velocity observed by EAR (Equatorial Atmosphere Radar) generated by the equatorial Kelvin wave. We investigate the transport of substance between stratosphere and troposphere in the equatorial region by data which have been collected by the polarization lidar at Kototabang and the EAR after Kelut volcano eruption. Using combination of ground based lidar, satellite based lidar, and atmosphere radar, we can get valuable evidence of equatorial transport of substance between the troposphere and the lower stratosphere. This work was supported by Collaborative Research based on MU Radar and Equatorial Atmosphere Radar.

Wave theory in rotating systems: Schrödinger equations bridge the gaps between the equatorial β-plane and the spherical earth

NASA Astrophysics Data System (ADS)

Paldor, N.

2017-12-01

The concise and elegant wave theory developed on the equatorial β-plane by Matsuno (1966, M66 hereafter) is based on the formulation of a Schrödinger equation associated with the governing Linear Rotating Shallow Water Equations (LRSWE). The theory yields explicit expressions for the dispersion relations and meridional amplitude structures of all zonally propagating waves - Rossby, Inertia-Gravity, Kelvin and Yanai. In contrast, the spherical wave theory of Longuet-Higgins (1968) is a collection of asymptotic expansions in many sub-ranges e.g. large, small (and even negative) Lamb Number; high and low frequency; low-latitudes, etc. that rests upon extensive numerical solutions of several Ordinary Differential Equations. The difference between the two theories is highlighted by their lengths. The essential elements of the former planar study are completely revealed in just 3-4 pages including the derivation of explicit formulae for the phase speeds and amplitude meridional structures. In comtrast, the latter spherical theory contains 97 pages and the results of the numerical calculations are summarized in 30 pages of tables filled with numerical values and about 31 figures, each of which containing many separate curves! In my talk I will re-visit the wave problem on a sphere by developing several Schrödinger equations that approximate the governing eigenvalue equation associated with zonally propagating waves. Each of the Schrödinger equations approximates the original second order Ordinary Differential Equation in a different range of the 3 parameters: Lamb-Number, frequency and zonal wavenumber. As in M66, each of the Schrödinger equations yields explicit expressions for the dispersion relations and meridional amplitude structure of Rossby and Inertia-Gravity waves. In addition, the analysis shows that Yanai wave exists on a sphere even tough the zonal velocity is regular everywhere there (in contrast to the β-plane where the zonal velocity is singular everywhere) and that Kelvin waves do not exist as a separate mode (but the eastward propagating n=0 Inertia-Gravity is nearly non-dispersive). References Longuet-Higgins, M. S. Phil. Trans. Roy. Soc. London; 262, 511-607; 1968 Matsuno, T.; J. Met. Soc. Japan. 44(1), 25-43; 1966

Open-Loop HIRF Experiments Performed on a Fault Tolerant Flight Control Computer

NASA Technical Reports Server (NTRS)

Koppen, Daniel M.

1997-01-01

During the third quarter of 1996, the Closed-Loop Systems Laboratory was established at the NASA Langley Research Center (LaRC) to study the effects of High Intensity Radiated Fields on complex avionic systems and control system components. This new facility provided a link and expanded upon the existing capabilities of the High Intensity Radiated Fields Laboratory at LaRC that were constructed and certified during 1995-96. The scope of the Closed-Loop Systems Laboratory is to place highly integrated avionics instrumentation into a high intensity radiated field environment, interface the avionics to a real-time flight simulation that incorporates aircraft dynamics, engines, sensors, actuators and atmospheric turbulence, and collect, analyze, and model aircraft performance. This paper describes the layout and functionality of the Closed-Loop Systems Laboratory, and the open-loop calibration experiments that led up to the commencement of closed-loop real-time flight experiments.

A study on ionospheric scintillation near the EIA crest in relation to equatorial electrodynamics

NASA Astrophysics Data System (ADS)

Chatterjee, S.; Chakraborty, S. K.; Veenadhari, B.; Banola, S.

2014-02-01

Equatorial electrojet (EEJ) data, which are considered as a proxy index of equatorial electric field, are analyzed in conjunction with equatorial ionosonde, total electron content (TEC) and scintillation data near the equatorial ionization anomaly (EIA) crest for the equinoctial months of high solar activity years (2011-2012) to identify any precursor index of postsunset evolution of equatorial electron density irregularities and subsequent occurrence of scintillation near the northern EIA crest. Only geomagnetically quiet and normal electrojet days are considered. The diurnal profiles of EEJ on the scintillation days exhibit a secondary enhancement in the afternoon to presunset hours following diurnal peaks. A series of electrodynamical processes conducive for generation of irregularities emerge following secondary enhancement of EEJ. Latitudinal profile of TEC exhibits resurgence in EIA structure around the postsunset period. Diurnal TEC profile near the EIA crest resembles postsunset secondary enhancement on the days with afternoon enhancement in EEJ. Occurrence of equatorial spread F and postsunset scintillation near the EIA crest seems to follow the secondary enhancement events in EEJ. Both the magnitude and duration of enhanced EEJ are found to be important for postsunset intensification of EIA structure and subsequent occurrence of equatorial irregularities. A critical value combining the two may be considered an important precursor for postsunset occurrence of scintillation near the EIA crest. The results are validated using archived data for the years 1989-1990 and explained in terms of modulation effects of enhanced equatorial fountain.

Evaluation of TransTech joint maker and precompaction screed.

DOT National Transportation Integrated Search

2000-09-01

The primary objective of this evaluation is to determine the effectiveness of the Joint Maker and Precompaction : Screed, both developed by TransTech Systems, Inc., in achieving higher and more uniform density across the mat of : a rehabilitated Hot ...

IRIS Toxicological Review of Cis-& Trans-1,2-Dichloroethylene (External Review Draft)

EPA Science Inventory

EPA is conducting a peer review of the scientific basis supporting the human health hazard and dose-response assessment of cis- and trans-1,2-dichloroethylene that will appear in the Integrated Risk Information System (IRIS) database.

Coupled dual loop absorption heat pump

DOEpatents

Sarkisian, Paul H.; Reimann, Robert C.; Biermann, Wendell J.

1985-01-01

A coupled dual loop absorption system which utilizes two separate complete loops. Each individual loop operates at three temperatures and two pressures. This low temperature loop absorber and condenser are thermally coupled to the high temperature loop evaporator, and the high temperature loop condenser and absorber are thermally coupled to the low temperature generator.

Prevalence of dependent loops in urinary drainage systems in hospitalized patients.

PubMed

Danek, Gale; Gravenstein, Nikolaus; Lizdas, David E; Lampotang, Samsun

2015-01-01

The purpose of this study was to measure the prevalence and configuration of dependent loops in urinary drainage systems in hospitalized, catheterized adults. The study sample comprised 141 patients with indwelling urinary catheters; subjects were hospitalized at an academic health center in northern Florida. We measured the prevalence of dependent loops in urine drainage systems and the incidence of urine-filled dependent loops over a 3-week period. We measured the heights of the crest (H(c)), trough (H(t)), and, when urine-filled dependent loops were present, the patient-side (H(p)) and bag-side (H(b)) menisci with a laser measurement system. All variables were measured in centimeters. The majority of observed urine drainage systems (85%) contained dependent loops in the drainage tubing and 93.8% of the dependent loops contained urine. H(c) and H(t) averaged 45.1 ± 11.1 and 27 ± 16.7 cm, respectively. Meniscus height difference (H(b) - H(p)) averaged 8.2 ± 5.8 and -12.2 ± 9.9 cm when H(p) < H(b)(65.3%) and H(p) > H(b) (32.7%), respectively. We found that dependent loops are extremely common in urinary drainage systems among hospitalized patients despite the manufacturer recommendations and nursing and hospital policies. Maintaining the urine drainage tubing free of dependent loops would require incorporation into nursing care priorities and workflow as inadvertent force on the tubing, for example, patient movement or nurse contact can change tubing configuration and allow excess drainage tubing to re-form a dependent loop.

STEREOSCOPIC OBSERVATION OF SLIPPING RECONNECTION IN A DOUBLE CANDLE-FLAME-SHAPED SOLAR FLARE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gou, Tingyu; Liu, Rui; Wang, Yuming

2016-04-20

The 2011 January 28 M1.4 flare exhibits two side-by-side candle-flame-shaped flare loop systems underneath a larger cusp-shaped structure during the decay phase, as observed at the northwestern solar limb by the Solar Dynamics Observatory . The northern loop system brightens following the initiation of the flare within the southern loop system, but all three cusp-shaped structures are characterized by ∼10 MK temperatures, hotter than the arch-shaped loops underneath. The “Ahead” satellite of the Solar Terrestrial Relations Observatory provides a top view, in which the post-flare loops brighten sequentially, with one end fixed while the other apparently slipping eastward. By performingmore » stereoscopic reconstruction of the post-flare loops in EUV and mapping out magnetic connectivities, we found that the footpoints of the post-flare loops are slipping along the footprint of a hyperbolic flux tube (HFT) separating the two loop systems and that the reconstructed loops share similarity with the magnetic field lines that are traced starting from the same HFT footprint, where the field lines are relatively flexible. These results argue strongly in favor of slipping magnetic reconnection at the HFT. The slipping reconnection was likely triggered by the flare and manifested as propagative dimmings before the loop slippage is observed. It may contribute to the late-phase peak in Fe xvi 33.5 nm, which is even higher than its main-phase counterpart, and may also play a role in the density and temperature asymmetry observed in the northern loop system through heat conduction.« less

Establishment of the New Ecuadorian Solar Physics Phenomena Division

NASA Astrophysics Data System (ADS)

Lopez, E. D.

2014-02-01

Crucial physical phenomena occur in the equatorial atmosphere and ionosphere, which are currently understudied and poorly understood. Thus, scientific campaigns for monitoring the equatorial region are required in order to provide the necessary data for the physical models. Ecuador is located in strategic geographical position where these studies can be performed, providing quality data for the scientific community working in understanding the nature of these physical systems. The Quito Astronomical Observatory of National Polytechnic School is moving in this direction by promoting research in space sciences for the study of the equatorial zone. With the participation and the valuable collaboration of international initiatives such us AWESOME, MAGDAS, SAVNET and CALLISTO, the Quito Observatory is establishing a new space physics division on the basis of the International Space Weather Initiative. In this contribution, the above initiative is presented by inviting leaders of other scientific projects to deploy its instruments and to work with us providing the necessary support to the creation of this new strategic research center

Seasonal variations of the ionospheric total electron content in Asian equatorial anomaly regions

NASA Astrophysics Data System (ADS)

Tsai, Ho-Fang; Liu, Jann-Yenq; Tsai, Wei-Hsiung; Liu, Chao-Han; Tseng, Ching-Liang; Wu, Chin-Chun

2001-12-01

The ionospheric total electron contents (TEC) in both northern and southern equatorial anomaly regions are examined by using the Global Positioning System (GPS) in Asian area. The TEC contour charts obtained at YMSM (25.2°N, 121.6°E 14.0°N geomagnetic) and DGAR (7.3°S, 72.4°E 16.2°S geomagnetic) stations in 1997, solar minimum, are investigated. It is found that the ionospheric crests manifest remarkable seasonal variations. The TEC values on both northern and southern equatorial anomaly crests yield their maximum values during the vernal and autumnal months, but the winter anomaly does not appear in the southern region. Results show that both crests are fully developed around midday in winter, postnoon in equinoxes and late afternoon in summer, and the two crests move significantly equatorward in winter but slightly poleward in summer and autumn. These phenomena can be fully explained by a combined theory of the transequatorial neutral wind, the subsolar point, and the auroral equatorward wind.

Epimetheus Above the Rings

NASA Image and Video Library

2015-11-09

Although Epimetheus appears to be lurking above the rings here, it's actually just an illusion resulting from the viewing angle. In reality, Epimetheus and the rings both orbit in Saturn's equatorial plane. Inner moons and rings orbit very near the equatorial plane of each of the four giant planets in our solar system, but more distant moons can have orbits wildly out of the equatorial plane. It has been theorized that the highly inclined orbits of the outer, distant moons are remnants of the random directions from which they approached the planets they orbit. This view looks toward the unilluminated side of the rings from about -0.3 degrees below the ringplane. The image was taken in visible light with the Cassini spacecraft narrow-angle camera on July 26, 2015. The view was obtained at a distance of approximately 500,000 miles (800,000 kilometers) from Epimetheus and at a Sun-Epimetheus-spacecraft, or phase, angle of 62 degrees. Image scale is 3 miles (5 kilometers) per pixel. http://photojournal.jpl.nasa.gov/catalog/PIA18342

An in vivo confocal Raman study of the delivery of trans retinol to the skin.

PubMed

Pudney, Paul D A; Mélot, Mickaël; Caspers, Peter J; Van Der Pol, Andre; Puppels, Gerwin J

2007-08-01

The purpose of this study is to monitor in vivo the delivery of trans-retinol into human skin. Delivery to real systems, such as skin, can be extremely difficult to execute and is problematic to confirm and measure. So far, methods for studying the delivery of compounds through the skin are mostly ex vivo and so inherently influence the skin and may not translate directly to the in vivo situation. Raman spectroscopy is uniquely placed to be able to measure biological processes in vivo, and this paper shows that the trans-retinol penetration into the skin can successfully be measured in vivo using this technique. This study measured the volar forearm of volunteers treated with 0.3% trans-retinol in propylene glycol (PG)/ethanol and 0.3% trans-retinol in caprylic/capric acid triglyceride (MYRITOL318), an oil found in skin creams. Solutions were applied and then confocal Raman depth profiles were obtained of the stratum corneum (SC) and into the viable epidermis (VE) up to 10 hours after treatment. Remarkable differences between a penetrating and a nonpenetrating solution can clearly be observed. Treating with trans-retinol in PG/ethanol results in trans-retinol penetrating through the SC and into the VE. Its penetration was also observed to be highly correlated with the depth of penetration of the PG, which is well known as an efficient penetration enhancer. In contrast, while treating with trans-retinol in MYRITOL318, trans-retinol hardly penetrates at all. For the first time, the penetration of trans-retinol has been monitored directly after application of solutions, in vivo without skin excision. Here, the effect of two different solutions on the delivery of trans-retinol into the skin was measured very effectively in vivo by Raman spectroscopy.

Equatorial oceanography. [review of research

NASA Technical Reports Server (NTRS)

Cane, M. A.; Sarachik, E. S.

1983-01-01

United States progress in equatorial oceanography is reviewed, focusing on the low frequency response of upper equatorial oceans to forcing by the wind. Variations of thermocline depth, midocean currents, and boundary currents are discussed. The factors which determine sea surface temperature (SST) variability in equatorial oceans are reviewed, and the status of understanding of the most spectacular manifestation of SST variability, the El Nino-Southern Oscillation phenomenon, is discussed. The problem of observing surface winds, regarded as a fundamental factor limiting understanding of the equatorial oceans, is addressed. Finally, an attempt is made to identify those current trends which are expected to bear fruit in the near and distant future.

The Onset of the 1997-1998 El Nino and its Impact on the Phytoplankton Community of the Central Equatorial Pacific

NASA Technical Reports Server (NTRS)

Chavez, F. P.; Strutton, P. G.; McPhaden, M. J.

1996-01-01

Using physical and bio-optical data from moorings in the central equatorial Pacific, the perturbations to phytoplankton biomass and productivity associated with the onset of the 1997-98 El Nino event were investigated. The data presented depict the physical progression of El Nino onset, from reversal of the trade winds in the western equatorial Pacific, through eastward propagation of equatorially trapped Kelvin waves and advection of waters from the nutrient-poor western equatorial warm pool. The physical perturbations led to fluctuations in phytoplankton biomass, quantum yield of fluorescence and a 50% reduction in primary productivity.

Control of polymer network topology in semi-batch systems

NASA Astrophysics Data System (ADS)

Wang, Rui; Olsen, Bradley; Johnson, Jeremiah

Polymer networks invariably possess topological defects: loops of different orders. Since small loops (primary loops and secondary loops) both lower the modulus of network and lead to stress concentration that causes material failure at low deformation, it is desirable to greatly reduce the loop fraction. We have shown that achieving loop fraction close to zero is extremely difficult in the batch process due to the slow decay of loop fraction with the polymer concentration and chain length. Here, we develop a modified kinetic graph theory that can model network formation reactions in semi-batch systems. We demonstrate that the loop fraction is not sensitive to the feeding policy if the reaction volume maintains constant during the network formation. However, if we initially put concentrated solution of small junction molecules in the reactor and continuously adding polymer solutions, the fractions of both primary loop and higher-order loops will be significantly reduced. There is a limiting value (nonzero) of loop fraction that can be achieved in the semi-batch system in condition of extremely slow feeding rate. This minimum loop fraction only depends on a single dimensionless variable, the product of concentration and with single chain pervaded volume, and defines an operating zone in which the loop fraction of polymer networks can be controlled through adjusting the feeding rate of the semi-batch process.

The Nonlinear Response of the Equatorial Pacific Ocean-Atmosphere System to Periodic Variations in Insolation and its Association with the Abrupt Climate Transitions during the Quaternary.

NASA Astrophysics Data System (ADS)

Lopes, P. G.

2015-12-01

The evidences of climate changes during the Quaternary are abundant but the physical mechanisms behind the climate transitions are controversial. The theory of Milankovitch takes into account the periodic orbital variations and the solar radiation received by the Earth as the main explanation for the glacial-interglacial cycles. However, some gaps in the theory still remain. In this study, we propose elucidating some of these gaps by approaching the Equatorial Pacific Ocean as a large oscillator, capable of triggering climate changes in different temporal scales. A mathematical model representing El Ninõ-like phenomena, based on Duffing equation and modulated by the astronomical cycle of 100 ka, was used to simulate the variability of the equatorial Pacific climate system over the last 2 Ma. The physical configuration of the Pacific Ocean, expressed in the equation, explains the temporal limit of the glacial-interglacial cycles. According to the simulation results, consistent with paleoclimate records, the amplification of the effects of the gradual variation of the Earth's orbit eccentricity - another unclear question - is due to the feedback mechanism of the Pacific ocean-atmosphere system, which responds non-linearly to small variations in insolation forcing and determines the ENSO-like phase (warm or cold) at different time scales and different intensities. The approach proposed here takes into account that the abrupt transitions between the ENSO-like phases, and the consequent changes in the sea surface temperature (SST) along the Equatorial Pacific Ocean, produce reactions that act as secondary causes of the temperature fluctuations that result in a glaciation (or deglaciation) - as the drastic change on the rate of evaporation/precipitation around the globe, and the increase (or decrease) of the atmospheric CO2 absorption by the phytoplankton. The transitional behavior between the warm and the cold phases, according to the presented model, is enhanced as the rate of SST variation increases.

Phase-locked loops. [in analog and digital circuits communication system

NASA Technical Reports Server (NTRS)

Gupta, S. C.

1975-01-01

An attempt to systematically outline the work done in the area of phase-locked loops which are now used in modern communication system design is presented. The analog phase-locked loops are well documented in several books but discrete, analog-digital, and digital phase-locked loop work is scattered. Apart from discussing the various analysis, design, and application aspects of phase-locked loops, a number of references are given in the bibliography.

A simple second-order digital phase-locked loop.

NASA Technical Reports Server (NTRS)

Tegnelia, C. R.

1972-01-01

A simple second-order digital phase-locked loop has been designed for the Viking Orbiter 1975 command system. Excluding analog-to-digital conversion, implementation of the loop requires only an adder/subtractor, two registers, and a correctable counter with control logic. The loop considers only the polarity of phase error and corrects system clocks according to a filtered sequence of this polarity. The loop is insensitive to input gain variation, and therefore offers the advantage of stable performance over long life. Predictable performance is guaranteed by extreme reliability of acquisition, yet in the steady state the loop produces only a slight degradation with respect to analog loop performance.

Split radiator design for heat rejection optimization for a waste heat recovery system

DOEpatents

Ernst, Timothy C.; Nelson, Christopher R.

2016-10-18

A cooling system provides improved heat recovery by providing a split core radiator for both engine cooling and condenser cooling for a Rankine cycle (RC). The cooling system includes a radiator having a first cooling core portion and a second cooling core portion. An engine cooling loop is fluidly connected the second cooling core portion. A condenser of an RC has a cooling loop fluidly connected to the first cooling core portion. A valve is provided between the engine cooling loop and the condenser cooling loop adjustably control the flow of coolant in the condenser cooling loop into the engine cooling loop. The cooling system includes a controller communicatively coupled to the valve and adapted to determine a load requirement for the internal combustion engine and adjust the valve in accordance with the engine load requirement.

Review article: closed-loop systems in anesthesia: is there a potential for closed-loop fluid management and hemodynamic optimization?

PubMed

Rinehart, Joseph; Liu, Ngai; Alexander, Brenton; Cannesson, Maxime

2012-01-01

Closed-loop (automated) controllers are encountered in all aspects of modern life in applications ranging from air-conditioning to spaceflight. Although these systems are virtually ubiquitous, they are infrequently used in anesthesiology because of the complexity of physiologic systems and the difficulty in obtaining reliable and valid feedback data from the patient. Despite these challenges, closed-loop systems are being increasingly studied and improved for medical use. Two recent developments have made fluid administration a candidate for closed-loop control. First, the further description and development of dynamic predictors of fluid responsiveness provides a strong parameter for use as a control variable to guide fluid administration. Second, rapid advances in noninvasive monitoring of cardiac output and other hemodynamic variables make goal-directed therapy applicable for a wide range of patients in a variety of clinical care settings. In this article, we review the history of closed-loop controllers in clinical care, discuss the current understanding and limitations of the dynamic predictors of fluid responsiveness, and examine how these variables might be incorporated into a closed-loop fluid administration system.

Fault evolution in the Potiguar rift termination, equatorial margin of Brazil

NASA Astrophysics Data System (ADS)

de Castro, D. L.; Bezerra, F. H. R.

2015-02-01

The transform shearing between South American and African plates in the Cretaceous generated a series of sedimentary basins on both plate margins. In this study, we use gravity, aeromagnetic, and resistivity surveys to identify architecture of fault systems and to analyze the evolution of the eastern equatorial margin of Brazil. Our study area is the southern onshore termination of the Potiguar rift, which is an aborted NE-trending rift arm developed during the breakup of Pangea. The basin is located along the NNE margin of South America that faces the main transform zone that separates the North and the South Atlantic. The Potiguar rift is a Neocomian structure located at the intersection of the equatorial and western South Atlantic and is composed of a series of NE-trending horsts and grabens. This study reveals new grabens in the Potiguar rift and indicates that stretching in the southern rift termination created a WNW-trending, 10 km wide, and ~ 40 km long right-lateral strike-slip fault zone. This zone encompasses at least eight depocenters, which are bounded by a left-stepping, en echelon system of NW-SE- to NS-striking normal faults. These depocenters form grabens up to 1200 m deep with a rhomb-shaped geometry, which are filled with rift sedimentary units and capped by postrift sedimentary sequences. The evolution of the rift termination is consistent with the right-lateral shearing of the equatorial margin in the Cretaceous and occurs not only at the rift termination but also as isolated structures away from the main rift. This study indicates that the strike-slip shearing between two plates propagated to the interior of one of these plates, where faults with similar orientation, kinematics, geometry, and timing of the major transform are observed. These faults also influence rift geometry.

Vertical rise velocity of equatorial plasma bubbles estimated from Equatorial Atmosphere Radar (EAR) observations and HIRB model simulations

NASA Astrophysics Data System (ADS)

Tulasi Ram, S.; Ajith, K. K.; Yokoyama, T.; Yamamoto, M.; Niranjan, K.

2017-06-01

The vertical rise velocity (Vr) and maximum altitude (Hm) of equatorial plasma bubbles (EPBs) were estimated using the two-dimensional fan sector maps of 47 MHz Equatorial Atmosphere Radar (EAR), Kototabang, during May 2010 to April 2013. A total of 86 EPBs were observed out of which 68 were postsunset EPBs and remaining 18 EPBs were observed around midnight hours. The vertical rise velocities of the EPBs observed around the midnight hours are significantly smaller ( 26-128 m/s) compared to those observed in postsunset hours ( 45-265 m/s). Further, the vertical growth of the EPBs around midnight hours ceases at relatively lower altitudes, whereas the majority of EPBs at postsunset hours found to have grown beyond the maximum detectable altitude of the EAR. The three-dimensional numerical high-resolution bubble (HIRB) model with varying background conditions are employed to investigate the possible factors that control the vertical rise velocity and maximum attainable altitudes of EPBs. The estimated rise velocities from EAR observations at both postsunset and midnight hours are, in general, consistent with the nonlinear evolution of EPBs from the HIRB model. The smaller vertical rise velocities (Vr) and lower maximum altitudes (Hm) of EPBs during midnight hours are discussed in terms of weak polarization electric fields within the bubble due to weaker background electric fields and reduced background ion density levels.