9 CFR 441.10 - Retained water.

Code of Federal Regulations, 2010 CFR

2010-01-01

... be permitted to retain water resulting from post-evisceration processing unless the establishment... that retain water from post-evisceration processing and that are sold, transported, offered for sale or... the establishment. Any post-evisceration washing or chilling processes that affect water retention...

9 CFR 441.10 - Retained water.

Code of Federal Regulations, 2012 CFR

2012-01-01

... be permitted to retain water resulting from post-evisceration processing unless the establishment... that retain water from post-evisceration processing and that are sold, transported, offered for sale or... the establishment. Any post-evisceration washing or chilling processes that affect water retention...

Determination of thermodynamic and transport parameters of naphthenic acids and organic process chemicals in oil sand tailings pond water.

PubMed

Wang, Xiaomeng; Robinson, Lisa; Wen, Qing; Kasperski, Kim L

2013-07-01

Oil sand tailings pond water contains naphthenic acids and process chemicals (e.g., alkyl sulphates, quaternary ammonium compounds, and alkylphenol ethoxylates). These chemicals are toxic and can seep through the foundation of the tailings pond to the subsurface, potentially affecting the quality of groundwater. As a result, it is important to measure the thermodynamic and transport parameters of these chemicals in order to study the transport behavior of contaminants through the foundation as well as underground. In this study, batch adsorption studies and column experiments were performed. It was found that the transport parameters of these chemicals are related to their molecular structures and other properties. The computer program (CXTFIT) was used to further evaluate the transport process in the column experiments. The results from this study show that the transport of naphthenic acids in a glass column is an equilibrium process while the transport of process chemicals seems to be a non-equilibrium process. At the end of this paper we present a real-world case study in which the transport of the contaminants through the foundation of an external tailings pond is calculated using the lab-measured data. The results show that long-term groundwater monitoring of contaminant transport at the oil sand mining site may be necessary to avoid chemicals from reaching any nearby receptors.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, Liange; Li, Lianchong; Rutqvist, Jonny

Clay/shale has been considered as potential host rock for geological disposal of high-level nuclear waste throughout the world, because of its low permeability, low diffusion coefficient, high retention capacity for radionuclides, and capability to self-seal fractures induced by tunnel excavation. For example, Callovo-Oxfordian argillites at the Bure site, France (Fouche et al., 2004), Toarcian argillites at the Tournemire site, France (Patriarche et al., 2004), Opalinus Clay at the Mont Terri site, Switzerland (Meier et al., 2000), and Boom clay at the Mol site, Belgium (Barnichon and Volckaert, 2003) have all been under intensive scientific investigation (at both field and laboratorymore » scales) for understanding a variety of rock properties and their relationships to flow and transport processes associated with geological disposal of nuclear waste. Clay/shale formations may be generally classified as indurated or plastic clays (Tsang and Hudson, 2010). The latter (including Boom clay) is a softer material without high cohesion; its deformation is dominantly plastic. During the lifespan of a clay repository, the repository performance is affected by complex thermal, hydrogeological, mechanical, chemical (THMC) processes, such as heat release due to radionuclide decay, multiphase flow, formation of damage zones, radionuclide transport, waste dissolution, and chemical reactions. All these processes are related to each other. An in-depth understanding of these coupled processes is critical for the performance assessment (PA) of the repository. These coupled processes may affect radionuclide transport by changing transport paths (e.g., formation and evolution of excavation damaged zone (EDZ)) and altering flow, mineral, and mechanical properties that are related to radionuclide transport. While radionuclide transport in clay formation has been studied using laboratory tests (e,g, Appelo et al. 2010, Garcia-Gutierrez et al., 2008, Maes et al., 2008), short-term field tests (e.g. Garcia-Gutierrez et al. 2006, Soler et al. 2008, van Loon et al. 2004, Wu et al. 2009) and numerical modeling (de Windt et al. 2003; 2006), the effects of THMC processes on radionuclide transport are not fully investigated. The objectives of the research activity documented in this report are to improve a modeling capability for coupled THMC processes and to use it to evaluate the THMC impacts on radionuclide transport. This research activity addresses several key Features, Events and Processes (FEPs), including FEP 2.2.08, Hydrologic Processes, FEP 2.2.07, Mechanical Processes and FEP 2.2.09, Chemical Process— Transport, by studying near-field coupled THMC processes in clay/shale repositories and their impacts on radionuclide transport. This report documents the progress that has been made in FY12. Section 2 discusses the development of THMC modeling capability. Section 3 reports modeling results of THMC impacts on radionuclide transport. Planned work for the remaining months of FY12 and proposed work for FY13 are presented in Section 4.« less

The peculiarities of process-based approach realization in transport sector company management

NASA Astrophysics Data System (ADS)

Khripko, Elena; Sidorov, Gennadiy

2017-10-01

In the present article we study the phenomena of multiple meaning in understanding process-based management method in construction of transport infrastructure facilities. The idea of multiple meaning is in distortions which appear during reception of the management process paradigm in organizational environment of transport sector. The cause of distortion in process management is organizational resistance. The distortions of management processes are discovered at the level of diffusion among spheres of responsibility, collision in forms of functional, project and process interaction between the owner of the process and its participants. The level of distortion is affected by the attitude towards the result of work which means that process understanding of the result is replaced by the functional one in practice of management. This transfiguration is the consequence of regressive defensive mechanisms of the organizational environment. On the base of experience of forming process management in construction of transport infrastructure facilities company of the issues of diagnostics of various forms of organizational resistance and ways of reducing the destructive influence on managing processes are reviewed.

Potential Transport and Degradation of “Aged” Pesticide Residues in Soil

USDA-ARS?s Scientific Manuscript database

Increased pesticide residence time in soil, or “aging”, has been shown to affect the sorption-desorption of pesticides in the soil, which in turn can control transport and degradation processes. Aging effects have been characterized by batch sequential extraction methods, in which sorption coefficie...

Potential transport and degradation of “Aged” pesticide residues in soil

USDA-ARS?s Scientific Manuscript database

“Aging” has been shown to affect the sorption-desorption of pesticides in the soil, which in turn can control transport and degradation processes. Aging effects have been characterized by batch sequential extraction methods, in which sorption coefficients (i.e. Kd) are determined for the chemical re...

Toward understanding the ecological impact of transportation corridors

Treesearch

Victoria J. Bennett; Winston P. Smith; Matthew G. Betts

2011-01-01

Transportation corridors (notably roads) affect wildlife habitat, populations, and entire ecosystems. Considerable effort has been expended to quantify direct effects of roads on wildlife populations and ecological communities and processes. Much less effort has been expended toward quantifying indirect effects. In this report, we provide a comprehensive review of road...

Effect of Forest Harvesting on Hydrogeomorphic Processes in Steep Terrain of Central Japan

EPA Science Inventory

Forest harvesting activities affect various hydrogeomorphic processes in forest terrain, including increases in occurrence of mass movements (i.e., landslides and debris flows), and changes in sediment transport rate in channels. Thus, the influence of harvesting on these process...

Scaling Considerations Related to Interactions of Hydrologics, Pedologic and Geomorphic Processes

EPA Science Inventory

Hydrologic, pedologic, and geomorphic processes are strongly interrelated and affected by scale. These interactions exert important controls on runoff generation, preferential flow, contaminant transport, surface erosion, and mass wasting. Measurement of hydraulic conductivity (K...

Topic III - Infiltration and Drainage: A section in Joint US Geological Survey, US Nuclear Regulatory Commission workshop on research related to low-level radioactive waste disposal, May 4-6, 1993, National Center, Reston, Virginia; Proceedings (WRI 95-4015)

USGS Publications Warehouse

Prudic, David E.; Gee, Glendon; Stevens, Peter R.; Nicholson, Thomas J.

1996-01-01

Infiltration into and drainage from facilities for the disposal of low-level radioactive wastes is considered the major process by which non-volatile contaminants are transported away from the facilities. The session included 10 papers related to the processes of infiltration and drainage, and to the simulation of flow and transport through the unsaturated zone. The first paper, presented by David Stonestrom, was an overview regarding the application of unsaturated flow theory to infiltration and drainage. Stonestrom posed three basic questions, which are:How well do we know the relevant processes affecting flow and transport?How well can we measure the parametric functions used to quantify flow and transport?How do we treat complexities inherent in field settings?The other nine papers presented during the session gave some insight to these questions. Topics included: laboratory measurement of unsaturated hydraulic conductivities at low water contents, by John Nimmo; use of environmental tracers to identify preferential flow through fractured media and to quantify drainage, by Edmund Prych and Edwin Weeks; field experiments to evaluate relevant processes affecting infiltration and drainage, by Brian Andraski, Glendon Gee, and Peter Wierenga; and the use of determinist'c and stochastic models for simulating flow and transport through heterogeneous sediments, by Richard Hills, Lynn Gelhar, and Shlomo Neuman.

Analysis and classification of bedload transport events with variable process characteristics

NASA Astrophysics Data System (ADS)

Kreisler, Andrea; Moser, Markus; Aigner, Johann; Rindler, Rolf; Tritthart, Michael; Habersack, Helmut

2017-08-01

Knowledge about the magnitude of bedload fluxes at given hydraulic conditions in natural streams is essential for improved process understanding, for the application, calibration and validation of bedload transport formulas, and for numerical sediment transport models. Nonetheless, extensive field measurements of bedload transport are challenging and therefore data from such efforts are rare. Bedload transport has been measured comprehensively at the downstream section of the Urslau torrent in Salzburg, Austria, since 2011. We used an integrative monitoring system that combines direct (mobile basket sampler, slot sampler) and indirect measuring devices (geophone plates). Continuous information about the intensity and distribution of bedload transport within the channel cross-section is available in high spatial and temporal resolution. Seven geophone plates at a stream width of 8 m are part of a measurement system that delivers data in 1-min intervals. These geophone data are calibrated using results of direct bedload measurements, providing an opportunity to calculate bedload rates and bedload yields in selected time periods. Continuous data on the bedload transport process over three years enabled assessing several bedload transport events. The investigation of bedload transport rate/discharge relationships reveals order-of-magnitude changes. For individual events, we observed shifts in the data, reflecting different bedload rates at comparable hydraulic conditions. This study reveals that variable sediment supply conditions affect the prevailing bedload transport rates at the Urslau stream. Calculating the bedload transport efficiency enables comparing bedload transport events that exhibit similar process characteristics. Finally, we provide a conceptual model of bedload transport process types as a function of bedload transport efficiency and dimensionless stream power.

Intermittency inhibited by transport: An exactly solvable model

NASA Astrophysics Data System (ADS)

Zanette, Damián H.

1994-04-01

Transport is incorporated in a discrete-time stochastic model of a system undergoing autocatalytic reactions of the type A-->2A and A-->0, whose population field is known to exhibit spatiotemporal intermittency. The temporal evolution is exactly solved, and it is shown that if the transport process is strong enough, intermittency is inhibited. This inhibition is nonuniform, in the sense that, as transport is strengthened, low-order population moments are affected before the high-order ones. Numerical simulations are presented to support the analytical results.

Important drug-nutrient interactions in the elderly.

PubMed

Thomas, J A; Burns, R A

1998-09-01

Several drug-nutrient interactions can occur, but their prevalence may be accentuated in the elderly. Geriatric patients may experience age-related changes in the pharmacokinetics of a drug-absorption, distribution, metabolism and excretion. When drug-nutrient interactions occur, they usually affect absorptive processes more frequently. Specific transporter systems facilitate the absorption of many drugs. Little is known about how these transporter systems are affected by aging. Co-existing disease states in the elderly may exaggerate the action of a drug and represent a confounding factor in drug-nutrient interactions. While several different drug-nutrient interactions are important in the elderly, those affecting the cardiovascular system warrant special attention.

LRP1 Modulates APP Intraneuronal Transport and Processing in Its Monomeric and Dimeric State

PubMed Central

Herr, Uta-Mareike; Strecker, Paul; Storck, Steffen E.; Thomas, Carolin; Rabiej, Verena; Junker, Anne; Schilling, Sandra; Schmidt, Nadine; Dowds, C. Marie; Eggert, Simone; Pietrzik, Claus U.; Kins, Stefan

2017-01-01

The low-density lipoprotein receptor-related protein 1, LRP1, interacts with APP and affects its processing. This is assumed to be mostly caused by the impact of LRP1 on APP endocytosis. More recently, also an interaction of APP and LRP1 early in the secretory pathway was reported whereat retention of LRP1 in the ER leads to decreased APP cell surface levels and in turn, to reduced Aβ secretion. Here, we extended the biochemical and immunocytochemical analyses by showing via live cell imaging analyses in primary neurons that LRP1 and APP are transported only partly in common (one third) but to a higher degree in distinct fast axonal transport vesicles. Interestingly, co-expression of LRP1 and APP caused a change of APP transport velocities, indicating that LRP1 recruits APP to a specific type of fast axonal transport vesicles. In contrast lowered levels of LRP1 facilitated APP transport. We further show that monomeric and dimeric APP exhibit similar transport characteristics and that both are affected by LRP1 in a similar way, by slowing down APP anterograde transport and increasing its endocytosis rate. In line with this, a knockout of LRP1 in CHO cells and in primary neurons caused an increase of monomeric and dimeric APP surface localization and in turn accelerated shedding by meprin β and ADAM10. Notably, a choroid plexus specific LRP1 knockout caused a much higher secretion of sAPP dimers into the cerebrospinal fluid compared to sAPP monomers. Together, our data show that LRP1 functions as a sorting receptor for APP, regulating its cell surface localization and thereby its processing by ADAM10 and meprin β, with the latter exhibiting a preference for APP in its dimeric state. PMID:28496400

CREB1 regulates glucose transport of glioma cell line U87 by targeting GLUT1.

PubMed

Chen, Jiaying; Zhang, Can; Mi, Yang; Chen, Fuxue; Du, Dongshu

2017-12-01

Glioma is stemmed from the glial cells in the brain, which is accounted for about 45% of all intracranial tumors. The characteristic of glioma is invasive growth, as well as there is no obvious boundary between normal brain tissue and glioma tissue, so it is difficult to resect completely with worst prognosis. The metabolism of glioma is following the Warburg effect. Previous researches have shown that GLUT1, as a glucose transporter carrier, affected the Warburg effect, but the molecular mechanism is not very clear. CREB1 (cAMP responsive element-binding protein1) is involved in various biological processes, and relevant studies confirmed that CREB1 protein regulated the expression of GLUT1, thus mediating glucose transport in cells. Our experiments mainly reveal that the CREB1 could affect glucose transport in glioma cells by regulating the expression of GLUT1, which controlled the metabolism of glioma and affected the progression of glioma.

Association of a Functional Polymorphism in the Serotonin Transporter Gene With Abnormal Emotional Processing in Ecstasy Users

PubMed Central

Roiser, Jonathan P.; Cook, Lynnette J.; Cooper, Jason D.; Rubinsztein, David C.; Sahakian, Barbara J.

2009-01-01

Objective The long-term effects of the use of 3,4-methylenedioxymethamphetamine (MDMA, or Ecstasy) in humans are controversial and unclear. The authors’ goal was to assess the contribution of a functional polymorphism in the gene encoding serotonin transporter to changes in emotional processing following chronic Ecstasy use. Method They investigated Beck Depression Inventory scores and performance on the Affective Go/No-Go test, a computerized neuropsychological test sensitive to emotional processing, in Ecstasy users and comparison subjects, stratifying the results by serotonin transporter genotype. Results Ecstasy use was associated with higher Beck Depression Inventory score and abnormalities in the Affective Go/No-Go test in individuals with the ss and ls genotype but not those with the ll genotype. Conclusions Ecstasy users carrying the s allele, but not comparison subjects carrying the s allele, showed abnormal emotional processing. On the basis of a comparison with acute tryptophan depletion, the authors hypothesize that chronic Ecstasy use may cause long-term changes to the serotonin system, and that Ecstasy users carrying the s allele may be at particular risk for emotional dysfunction. PMID:15741482

Processes affecting suspended sediment transport in the mid-field plume region of the Rhine River, Netherlands.

NASA Astrophysics Data System (ADS)

Flores, R. P.; Rijnsburger, S.; Horner-Devine, A.; Souza, A. J.; Pietrzak, J.

2016-02-01

This work will describe dominant processes affecting suspended sediment transport along the Dutch coast, in the mid-field plume region of the Rhine River. We will present field observations from two long-term deployments conducted in the vicinity of the Sand Engine, a mega-nourishment experiment located 10 km north of the Rhine river mouth. To investigate the role of density stratification, winds, tides, waves and river plume processes on sediment transport, frames and moorings were deployed within the excursion of the tidal plume front generated by the freshwater outflow from the Rhine River for 4 and 6 weeks during years 2013 and 2014, respectively. The moorings were designed to measure vertical profiles of suspended sediment concentration (SSC) and salinity, using arrays of CTDs and OBS sensors. Mean tidal velocities were measured using bottom-mounted ADCPs. The near-bed dynamics and the near-bottom sediment concentrations were measured as well using a set of synchronized ADVs and OBSs. By combining the two deployments we observe hydrodynamics and suspended sediment dynamics under a wide range of forcing conditions. Preliminary observations indicate that stratification is highly dependent on wind magnitude and direction, and its role is primarily identified as to induce significant cross-shore sediment transport product of the generation of cross-shore velocities due to the modification of the tidal ellipses and the passage of the surface plume front. The passage of the surface plume front generates strong offshore currents near the bottom, producing transport events that can be similar in magnitude to the dominant alongshore transport. Preliminary results also indicate that storms play an important role in alongshore transport primarily by wave-induced sediment resuspension, but as stratification is suppressed due to the enhancement of mixing processes, no significant cross-shore transport is observed during very energetic conditions.

3-D Characterization of Detrital Zircon Grains and its Implications for Fluvial Transport, Mixing, and Preservation Bias

NASA Astrophysics Data System (ADS)

Markwitz, V.; Kirkland, C. L.; Mehnert, A.; Gessner, K.; Shaw, J.

2017-12-01

Detrital zircon studies can suffer from selective loss of provenance information due to U-Pb age discordance, metamictization, metamorphic overprinting and fluviatile transport processes. The relationship between isotopic composition and zircon grain shape, and how grain shape is modified during transport, is largely unknown. We combine X-ray tomography with U-Pb geochronology to quantify how fluvial transport affects 3-D zircon shape, detrital age signature, and grain density along the Murchison River, whose catchment comprises Eoarchean to Early Paleozoic source rocks in Western Australia. We acquired tomographic volumes and isotopic data from 373 detrital zircons to document changes in size, shape and density in transport direction, and explore how grain shape, age spectra and the proportion of discordant material vary along the channel. Results show that shape characteristics are sensitive to transport distance, stream gradient, proximity to source material, and whether the source consists of primary or recycled zircons. With increasing transport distance, grain lengths decrease more than their widths. Furthermore, the loss of metamict grains occurs at a near constant rate, resulting in a linear increase of mean calculated zircon density by ca. 0.03 g/cm3 per 100 km transport distance. 3-D grain shape is therefore strongly linked to detrital age signature, and mean grain density is a function of the absolute transport distance. 3-D shape characteristics provide valuable information on detrital zircon populations, including the interaction between source materials with fluvial transport processes, which significantly affects preservation bias and, by inference, the representativeness of the sampled data.

Workshop on Critical Issues in Microgravity Fluids, Transport, and Reaction Processes in Advanced Human Support Technology

NASA Technical Reports Server (NTRS)

Chiaramonte, Francis P.; Joshi, Jitendra A.

2004-01-01

This workshop was designed to bring the experts from the Advanced Human Support Technologies communities together to identify the most pressing and fruitful areas of research where success hinges on collaborative research between the two communities. Thus an effort was made to bring together experts in both advanced human support technologies and microgravity fluids, transport and reaction processes. Expertise was drawn from academia, national laboratories, and the federal government. The intent was to bring about a thorough exchange of ideas and develop recommendations to address the significant open design and operation issues for human support systems that are affected by fluid physics, transport and reaction processes. This report provides a summary of key discussions, findings, and recommendations.

Modeling of natural organic matter transport processes in groundwater.

PubMed Central

Yeh, T C; Mas-Pla, J; McCarthy, J F; Williams, T M

1995-01-01

A forced-gradient tracer test was conducted at the Georgetown site to study the transport of natural organic matter (NOM) in groundwater. In particular, the goal of this experiment was to investigate the interactions between NOM and the aquifer matrix. A detailed three-dimensional characterization of the hydrologic conductivity heterogeneity of the site was obtained using slug tests. The transport of a conservative tracer (chloride) was successfully reproduced using these conductivity data. Despite the good simulation of the flow field, NOM breakthrough curves could not be reproduced using a two-site sorption model with spatially constant parameters. Preliminary results suggest that different mechanisms for the adsorption/desorption processes, as well as their spatial variability, may significantly affect the transport and fate of NOM. PMID:7621798

Aeolian processes and the bioshpere: Interactions and feedback loops

USDA-ARS?s Scientific Manuscript database

Aeolian processes affect landform evolution, biogeochemical cycles, regional climate, human health, and desertification. The entrainment, transport and deposition of aeolian sediments are recognized as major drivers in the dynamics of the earth system and there is a growing interest in the scientif...

Introducing Third-Year Undergraduates to GEANT4 Simulations of Light Transport and Collection in Scintillation Materials

ERIC Educational Resources Information Center

Riggi, Simone; La Rocca, Paola; Riggi, Francesco

2011-01-01

GEANT4 simulations of the processes affecting the transport and collection of optical photons generated inside a scintillation detector were carried out, with the aim to complement the educational material offered by textbooks to third-year physics undergraduates. Two typical situations were considered: a long scintillator strip with and without a…

Fuels processing for transportation fuel cell systems

NASA Astrophysics Data System (ADS)

Kumar, R.; Ahmed, S.

Fuel cells primarily use hydrogen as the fuel. This hydrogen must be produced from other fuels such as natural gas or methanol. The fuel processor requirements are affected by the fuel to be converted, the type of fuel cell to be supplied, and the fuel cell application. The conventional fuel processing technology has been reexamined to determine how it must be adapted for use in demanding applications such as transportation. The two major fuel conversion processes are steam reforming and partial oxidation reforming. The former is established practice for stationary applications; the latter offers certain advantages for mobile systems and is presently in various stages of development. This paper discusses these fuel processing technologies and the more recent developments for fuel cell systems used in transportation. The need for new materials in fuels processing, particularly in the area of reforming catalysis and hydrogen purification, is discussed.

Looking on the bright side: biased attention and the human serotonin transporter gene.

PubMed

Fox, Elaine; Ridgewell, Anna; Ashwin, Chris

2009-05-22

Humans differ in terms of biased attention for emotional stimuli and these biases can confer differential resilience and vulnerability to emotional disorders. Selective processing of positive emotional information, for example, is associated with enhanced sociability and well-being while a bias for negative material is associated with neuroticism and anxiety. A tendency to selectively avoid negative material might also be associated with mental health and well-being. The neurobiological mechanisms underlying these cognitive phenotypes are currently unknown. Here we show for the first time that allelic variation in the promotor region of the serotonin transporter gene (5-HTTLPR) is associated with differential biases for positive and negative affective pictures. Individuals homozygous for the long allele (LL) showed a marked bias to selectively process positive affective material alongside selective avoidance of negative affective material. This potentially protective pattern was absent among individuals carrying the short allele (S or SL). Thus, allelic variation on a common genetic polymorphism was associated with the tendency to selectively process positive or negative information. The current study is important in demonstrating a genotype-related alteration in a well-established processing bias, which is a known risk factor in determining both resilience and vulnerability to emotional disorders.

Land transportation model for supply chain manufacturing industries

NASA Astrophysics Data System (ADS)

Kurniawan, Fajar

2017-12-01

Supply chain is a system that integrates production, inventory, distribution and information processes for increasing productivity and minimize costs. Transportation is an important part of the supply chain system, especially for supporting the material distribution process, work in process products and final products. In fact, Jakarta as the distribution center of manufacturing industries for the industrial area. Transportation system has a large influences on the implementation of supply chain process efficiency. The main problem faced in Jakarta is traffic jam that will affect on the time of distribution. Based on the system dynamic model, there are several scenarios that can provide solutions to minimize timing of distribution that will effect on the cost such as the construction of ports approaching industrial areas other than Tanjung Priok, widening road facilities, development of railways system, and the development of distribution center.

Investigation of Thermal Creep and Thermal Stress Effects in Microgravity Physical Vapor Transport

NASA Technical Reports Server (NTRS)

Mackowski, D. W. (Principal Investigator); Knight, R. W. (Principal Investigator)

1996-01-01

Reported here are the results of our numerical investigation into the mechanisms which affect the transport and growth processes in physical vapor transport (PVT) crystal growth ampoules. The first part of the report consists of a brief summary of the major accomplishments and conclusions of our work. The second part consists of two manuscripts, submitted to the Journal of Crystal Growth, which provided a detailed description of the findings in our investigation.

Involvement of Serotonin Transporter Gene Polymorphisms (5-HTT) in Impulsive Behavior in the Japanese Population

PubMed Central

Nomura, Michio; Kaneko, Masayuki; Okuma, Yasunobu; Nomura, Jun; Kusumi, Ichiro; Koyama, Tsukasa; Nomura, Yasuyuki

2015-01-01

The serotonergic pathway has been implicated in the pathogenesis of impulsivity, and sensitivity to aversive outcomes may be linked to serotonin (5-HT) levels. Polymorphisms in the gene that encodes the serotonin transporter (5-HTT), which have differential effects on the level of serotonin transmission, display alternate responses to aversive stimuli. However, recent studies have shown that 5-HT does not affect motor function, which suggests that the functioning of the serotonin-transporter-linked polymorphic region (5-HTTLPR) does not directly affect the behavioral regulatory process itself, but instead exerts an effect via the evaluation of the potential risk associated with particular behavioral outputs. The aim of the present study was to examine the effect of specific 5-HTTLPR genotypes on the motor regulatory process, as observed during a Go/Nogo punishment feedback task. 5-HTT gene-linked promoter polymorphisms were analyzed by polymerase chain reaction, using lymphocytes from 61 healthy Japanese volunteers. Impulsivity was defined as the number of commission errors (responding when one should not) made during a Go/Nogo task. We found that the s/s genotype group made fewer impulsive responses, specifically under aversive conditions for committing such errors, compared to those in the s/l group, without affecting overall motor inhibition. These results suggest that 5-HTTLPRs do not directly affect the behavioral regulatory process itself, but may instead exert an effect on the evaluation of potential risk. The results also indicate that under such aversive conditions, decreased expression of 5-HTT may promote motor inhibitory control. PMID:25775400

Connexin-deficiency affects expression levels of glial glutamate transporters within the cerebrum.

PubMed

Unger, Tina; Bette, Stefanie; Zhang, Jiong; Theis, Martin; Engele, Jürgen

2012-01-06

The glial glutamate transporter subtypes, GLT-1/EAAT-2 and GLAST/EAAT-1 clear the bulk of extracellular glutamate and are severely dysregulated in various acute and chronic brain diseases. Despite the previous identification of several extracellular factors modulating glial glutamate transporter expression, our knowledge of the regulatory network controlling glial glutamate transport in health and disease still remains incomplete. In studies with cultured cortical astrocytes, we previously obtained evidence that glial glutamate transporter expression is also affected by gap junctions/connexins. To assess whether gap junctions would likewise control the in vivo expression of glial glutamate transporters, we have now assessed their expression levels in brains of conditional Cx43 knockout mice, total Cx30 knockouts, as well as Cx43/Cx30 double knockouts. We found that either knocking out Cx30, Cx43, or both increases GLT-1/EAAT-2 protein levels in the cerebral cortex to a similar extent. By contrast, GLAST/EAAT-1 protein levels maximally increased in cerebral cortices of Cx30/Cx43 double knockouts, implying that gap junctions differentially affect the expression of GLT-1/EAAT-2 and GLAST/EAAT-1. Quantitative PCR analysis further revealed that increases in glial glutamate transporter expression are brought about by transcriptional and translational/posttranslational processes. Moreover, GLT-1/EAAT-2- and GLAST/EAAT-1 protein levels remained unchanged in the hippocampi of Cx43/Cx30 double knockouts when compared to Cx43fl/fl controls, indicating brain region-specific effects of gap junctions on glial glutamate transport. Since astrocytic gap junction coupling is affected in various forms of brain injuries, our findings point to gap junctions/connexins as important regulators of glial glutamate turnover in the diseased cerebral cortex. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Evaluating the fate of six common pharmaceuticals using a reactive transport model: insights from a stream tracer test.

PubMed

Riml, Joakim; Wörman, Anders; Kunkel, Uwe; Radke, Michael

2013-08-01

Quantitative information regarding the capacity of rivers to self-purify pharmaceutical residues is limited. To bridge this knowledge gap, we present a methodology for quantifying the governing processes affecting the fate of pharmaceuticals in streaming waters and, especially, to evaluate their relative significance for tracer observations. A tracer test in Säva Brook, Sweden was evaluated using a coupled physical-biogeochemical model framework containing surface water transport together with a representation of transient storage in slow/immobile zones of the stream, which are presumably important for the retention and attenuation of pharmaceuticals. To assess the key processes affecting the environmental fate of the compounds, we linked the uncertainty estimates of the reaction rate coefficients to the relative influence of transformation and sorption that occurred in different stream environments. The hydrological and biogeochemical contributions to the fate of the pharmaceuticals were decoupled, and the results indicate a moderate hydrological retention in the hyporheic zone as well as in the densely vegetated parts of the stream. Biogeochemical reactions in these transient storage zones further affected the fate of the pharmaceuticals, and we found that sorption was the key process for bezafibrate, metoprolol, and naproxen, while primary transformation was the most important process for clofibric acid and ibuprofen. Conversely, diclofenac was not affected by sorption or transformation. Copyright © 2013 Elsevier B.V. All rights reserved.

Improved electron transport properties of n-type naphthalenediimide polymers through refined molecular ordering and orientation induced by processing solvents.

PubMed

An, Yujin; Long, Dang Xuan; Kim, Yiho; Noh, Yong-Young; Yang, Changduk

2016-05-14

To determine the role played by the choice of processing solvents in governing the photophysics, microstructure, and charge carrier transport in naphthalenediimide (NDI)-based polymers, we have prepared two new NDI-bithiophene (T2)- and NDI-thienothiophene (TTh)-containing polymers with hybrid siloxane pentyl chains (SiC5) (P(NDI2SiC5-T2) and P(NDI2SiC5-TTh)). Among the various processing solvents studied here, the films prepared using chloroform exhibited far better electron mobilities (0.16 ± 0.1-0.21 ± 0.05 cm(2) V(-1) s(-1)) than the corresponding samples prepared from different solvents, exceeding one order of magnitude higher, indicating the significant influence of the processing solvent on the charge transport. Upon thin-film analysis using atomic force microscopy and grazing incidence X-ray diffraction, we discovered that molecular ordering and orientation are affected by the choice of the processing solvent, which is responsible for the change in the transport characteristics of this class of polymers.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Qingtao; Li, Liyu; Nie, Zimin

We will show a new method to differentiate the vanadium transport from concentration gradient and that from electric field. Flow batteries with vanadium and iron redox couples as the electro-active species were employed to investigate the transport behavior of vanadium ions in the presence of electric field. It was shown that electric field accelerated the positive-to-negative and reduced the negative-to-positive vanadium ions transport in charge process and affected the vanadium ions transport in an opposite way in discharge process. In addition, a method was designed to differentiate the concentration gradient-driven vanadium ions diffusion and electric field-driven vanadium ions migration. Simplifiedmore » mathematical model was established to simulate the vanadium ions transport in real charge-discharge operation of flow battery. The concentration gradient diffusion coefficients and electric-migration coefficients of V2+, V3+, VO2+, and VO2+ across Nafion membrane were obtained by fitting the experimental data.« less

Wildland fire emissions, carbon, and climate: Plume rise, atmospheric transport, and chemistry processes

Treesearch

Warren Heilman; Yongqiang Liu; Shawn Urbanski; Vladimir Kovalev; Robert Mickler

2014-01-01

This paper provides an overview and summary of the current state of knowledge regarding critical atmospheric processes that affect the distribution and concentrations of greenhouse gases and aerosols emitted from wildland fires or produced through subsequent chemical reactions in the atmosphere. These critical atmospheric processes include the dynamics of plume rise,...

High-speed imaging of the transient ice accretion process on a NACA 0012 airfoil

NASA Astrophysics Data System (ADS)

Waldman, Rye; Hu, Hui

2014-11-01

Ice accretion on aircraft wings poses a performance and safety threat as aircraft encounter supercooled droplets suspended in the cloud layer. The details of the ice accretion depend on the atmospheric conditions and the fight parameters. We present the measurement results of the experiments conducted in the Iowa State icing wind tunnel on a NACA 0012 airfoil to study the transient ice accretion process under varying icing conditions. The icing process on the wing consists of a complex interaction of water deposition, surface water transport, and freezing. The aerodynamics affects the water deposition, the heat and mass transport, and ice accumulation; meanwhile, the accumulating ice also affects the aerodynamics. High-speed video of the unsteady icing accretion process was acquired under controlled environmental conditions to quantitatively measure the transient water run back, rivulet formation, and accumulated ice growth, and the experiments show how varying the environmental conditions modifies the ice accretion process. Funding support from the Iowa Energy Center with Grant No. 14-008-OG and National Science Foundation (NSF) with Grant No. CBET-1064196 and CBET-1438099 is gratefully acknowledged.

SUMO and Nucleocytoplasmic Transport.

PubMed

Ptak, Christopher; Wozniak, Richard W

2017-01-01

The transport of proteins between the nucleus and cytoplasm occurs through nuclear pore complexes and is facilitated by numerous transport factors. These transport processes are often regulated by post-translational modification or, reciprocally, transport can function to control post-translational modifications through regulated transport of key modifying enzymes. This interplay extends to relationships between nucleocytoplasmic transport and SUMO-dependent pathways. Examples of protein sumoylation inhibiting or stimulating nucleocytoplasmic transport have been documented, both through its effects on the physical properties of cargo molecules and by directly regulating the functions of components of the nuclear transport machinery. Conversely, the nuclear transport machinery regulates the localization of target proteins and enzymes controlling dynamics of sumoylation and desumoylation thereby affecting the sumoylation state of target proteins. These inter-relationships between SUMO and the nucleocytoplasmic transport machinery, and the varied ways in which they occur, are discussed.

Peritoneal Fluid Transport rather than Peritoneal Solute Transport Associates with Dialysis Vintage and Age of Peritoneal Dialysis Patients.

PubMed

Waniewski, Jacek; Antosiewicz, Stefan; Baczynski, Daniel; Poleszczuk, Jan; Pietribiasi, Mauro; Lindholm, Bengt; Wankowicz, Zofia

2016-01-01

During peritoneal dialysis (PD), the peritoneal membrane undergoes ageing processes that affect its function. Here we analyzed associations of patient age and dialysis vintage with parameters of peritoneal transport of fluid and solutes, directly measured and estimated based on the pore model, for individual patients. Thirty-three patients (15 females; age 60 (21-87) years; median time on PD 19 (3-100) months) underwent sequential peritoneal equilibration test. Dialysis vintage and patient age did not correlate. Estimation of parameters of the two-pore model of peritoneal transport was performed. The estimated fluid transport parameters, including hydraulic permeability (LpS), fraction of ultrasmall pores (α u), osmotic conductance for glucose (OCG), and peritoneal absorption, were generally independent of solute transport parameters (diffusive mass transport parameters). Fluid transport parameters correlated whereas transport parameters for small solutes and proteins did not correlate with dialysis vintage and patient age. Although LpS and OCG were lower for older patients and those with long dialysis vintage, αu was higher. Thus, fluid transport parameters--rather than solute transport parameters--are linked to dialysis vintage and patient age and should therefore be included when monitoring processes linked to ageing of the peritoneal membrane.

Energy efficiency analysis of the manipulation process by the industrial objects with the use of Bernoulli gripping devices

NASA Astrophysics Data System (ADS)

Savkiv, Volodymyr; Mykhailyshyn, Roman; Duchon, Frantisek; Mikhalishin, Mykhailo

2017-11-01

The article deals with the topical issue of reducing energy consumption for transportation of industrial objects. The energy efficiency of the process of objects manipulation with the use of the orientation optimization method while gripping with the help of different methods has been studied. The analysis of the influence of the constituent parts of inertial forces, that affect the object of manipulation, on the necessary force characteristics and energy consumption of Bernoulli gripping device has been proposed. The economic efficiency of the use of the optimal orientation of Bernoulli gripping device while transporting the object of manipulation in comparison to the transportation without re-orientation has been proved.

The impact of benthic fauna on fluvial bed load transport: Challenges of upscaling laboratory experiments to river and landscape scales.

NASA Astrophysics Data System (ADS)

Rice, S. P.

2012-04-01

The impact on sediment transport processes and channel morphology of several relatively large, iconic animals including beaver and salmon is increasingly well understood. However, many other aquatic fauna are important zoogeomorphic agents and ecosystem engineers. These somewhat overlooked "Cinderella" species include benthic aquatic insect larvae, freshwater crustaceans and many species of fish. Despite relatively modest individual effects, the ubiquity, abundance and cumulative impact of these organisms makes them a potentially significant agency, with as yet undiscovered and unquantified impacts on channel morphology and sediment fluxes. Their actions (digging, foraging, moving, burrowing), constructions and secretions modify bed sediment characteristics (grain size distribution, interlock, imbrication, protrusion), alter bed topography (thence hydraulic roughness) and contribute to biogenic restraints on grain movement. In turn, they can affect the distribution of surface particle entrainment thresholds and bed shear stresses, with implications for bed load transport. Flume experiments have measured some of these impacts and provided direct observations of the mechanisms involved, but many of the most interesting research questions pertain to the impact of these animals at reach, catchment and even landscape scales: Not least, what is the impact of small aquatic animals on bed load flux and yield? This presentation will consider some of the challenges involved in answering this question; that is, of scaling up experimental understanding of how aquatic animals affect bed load transport processes to river scales. Pertinent themes include: (1) the potential impacts of experimental arrangements on the behaviours and activities that affect hydraulic or geomorphological processes; (2) field coincidence of the spatial and temporal distributions of (a) the animals and their behaviours with (b) the physical conditions (substrates, flows) under which those animals are understood to have an effect; (3) the magnitude of any demonstrable net field impact, relative to those other factors that control bed load transport rates.

Reactive transport under stress: Permeability evolution by chemo-mechanical deformation

NASA Astrophysics Data System (ADS)

Roded, R.; Holtzman, R.

2017-12-01

The transport of reactive fluids in porous media is important in many natural and engineering processes. Reaction with the solid matrix—e.g. dissolution—changes the transport properties, which in turn affect the rate of reagent transport and hence the reaction. The importance of this highly nonlinear problem has motivated intensive research. Specifically, there have been numerous studies concerning the permeability evolution, especially the process of "wormholing", where preferential dissolution of the most conductive regions leads to a runaway permeability increase. Much less attention, however, has been given to the effect of geomechanics; that is, how the fact that the medium is under stress changes the permeability evolution. Here, we present a novel, mechanistic pore-scale model, simulating the interplay between pore opening by matrix dissolution and pore closure by mechanical compaction, facilitated by weakening caused by the very same process of dissolution. We combine a pore network model of reactive transport with a block-spring model that captures the effect of geomechanics through the update of the network properties. Our simulations show that permeability enhancement is inhibited by stress concentration downstream, in the less dissolved (hence stiffer) regions. Higher stresses lead to stronger inhibition, in agreement with experiments. The effect of stress also depends on the Damkohler number (Da)—the ratio between the flow and the reaction rate. At rapid injection (small Da), where dissolution is relatively uniform, stress has a significant effect on permeability. At slower flow rates (high Da, wormholing regime), stress affects the permeability evolution mostly in early stages, with a much smaller effect on the injected volume required for a significant permeability increase (breakthrough) than at low Da. Interestingly, at higher Da, stress concentration downstream induced by the more heterogeneous dissolution leads to a more homogeneous reagent transport, promoting wormhole competition.

Interaction of dissolution, sorption and biodegradation on transport of BTEX in a saturated groundwater system: Numerical modeling and spatial moment analysis

NASA Astrophysics Data System (ADS)

Valsala, Renu; Govindarajan, Suresh Kumar

2018-06-01

Interaction of various physical, chemical and biological transport processes plays an important role in deciding the fate and migration of contaminants in groundwater systems. In this study, a numerical investigation on the interaction of various transport processes of BTEX in a saturated groundwater system is carried out. In addition, the multi-component dissolution from a residual BTEX source under unsteady flow conditions is incorporated in the modeling framework. The model considers Benzene, Toluene, Ethyl Benzene and Xylene dissolving from the residual BTEX source zone to undergo sorption and aerobic biodegradation within the groundwater aquifer. Spatial concentration profiles of dissolved BTEX components under the interaction of various sorption and biodegradation conditions have been studied. Subsequently, a spatial moment analysis is carried out to analyze the effect of interaction of various transport processes on the total dissolved mass and the mobility of dissolved BTEX components. Results from the present numerical study suggest that the interaction of dissolution, sorption and biodegradation significantly influence the spatial distribution of dissolved BTEX components within the saturated groundwater system. Mobility of dissolved BTEX components is also found to be affected by the interaction of these transport processes.

Glycolysis-mediated control of blood-brain barrier development and function.

PubMed

Salmina, Alla B; Kuvacheva, Natalia V; Morgun, Andrey V; Komleva, Yulia K; Pozhilenkova, Elena A; Lopatina, Olga L; Gorina, Yana V; Taranushenko, Tatyana E; Petrova, Lyudmila L

2015-07-01

The blood-brain barrier (BBB) consists of differentiated cells integrating in one ensemble to control transport processes between the central nervous system (CNS) and peripheral blood. Molecular organization of BBB affects the extracellular content and cell metabolism in the CNS. Developmental aspects of BBB attract much attention in recent years, and barriergenesis is currently recognized as a very important and complex mechanism of CNS development and maturation. Metabolic control of angiogenesis/barriergenesis may be provided by glucose utilization within the neurovascular unit (NVU). The role of glycolysis in the brain has been reconsidered recently, and it is recognized now not only as a process active in hypoxic conditions, but also as a mechanism affecting signal transduction, synaptic activity, and brain development. There is growing evidence that glycolysis-derived metabolites, particularly, lactate, affect barriergenesis and functioning of BBB. In the brain, lactate produced in astrocytes or endothelial cells can be transported to the extracellular space via monocarboxylate transporters (MCTs), and may act on the adjoining cells via specific lactate receptors. Astrocytes are one of the major sources of lactate production in the brain and significantly contribute to the regulation of BBB development and functioning. Active glycolysis in astrocytes is required for effective support of neuronal activity and angiogenesis, while endothelial cells regulate bioavailability of lactate for brain cells adjusting its bidirectional transport through the BBB. In this article, we review the current knowledge with regard to energy production in endothelial and astroglial cells within the NVU. In addition, we describe lactate-driven mechanisms and action of alternative products of glucose metabolism affecting BBB structural and functional integrity in developing and mature brain. Copyright © 2015 Elsevier Ltd. All rights reserved.

Variation in the serotonin transporter gene modulates selective attention to threat.

PubMed

Osinsky, Roman; Reuter, Martin; Küpper, Yvonne; Schmitz, Anja; Kozyra, Eva; Alexander, Nina; Hennig, Jürgen

2008-08-01

The 5-HTTLPR is an insertion/deletion polymorphism in the promoter region of the serotonin transporter gene. Prior research has revealed associations between the short-allele variant of this polymorphism, enhanced self-reported negative emotionality, and hypersensitivity of fear relevant neural circuits. In a sample of 50 healthy women we examined the role of 5-HTTLPR for cognitive-affective processing of phylogenetical fear-relevant stimuli (spiders) in a dot probe task. In contrast to homozygote long-allele carriers (ll), participants carrying at least 1 short allele (ss and sl) selectively shifted attention toward pictures of spiders, when these were presented for a duration of 2,000 ms. These results argue for an involvement of 5-HTTLPR in cognitive processing of threatening stimuli and thus, underpin its general role for individual differences in negative affect.

Investigation of the Physical Processes Governing Large-scale Tracer Transport in the Stratosphere and Troposphere

NASA Technical Reports Server (NTRS)

Selkirk, Henry B.

1996-01-01

This report reviews the second year of a three-year research program to investigate the physical mechanisms which underlie the transport of trace constituents in the stratosphere- troposphere system. The primary scientific goal of the research is to identify the processes which transport air masses within the lower stratosphere, particularly between the tropics and middle latitudes. The SASS program seeks to understand the impact of the present and future fleets of conventional jet traffic on the upper troposphere and lower stratosphere, while complementary airborne observations under UARP seek to understand the complex interactions of dynamical and chemical processes that affect the ozone layer. The present investigation contributes to the goals of each of these by diagnosing the history of air parcels intercepted by NASA research aircraft in UARP and AEAP campaigns.

The effect of federal health policy on occupational medicine.

PubMed

McCunney, R J; Cikins, W

1990-01-01

All three branches of the federal government affect occupational medicine. Notable examples include: 1) the Department of Transportation ruling (1988) requiring drug testing in diverse areas of the transportation industry (executive branch); 2) the Workplace Drug Act (1988) calling for organizations to have a policy towards drug and alcohol abuse (legislative branch); and 3) the Supreme Court ruling on the constitutionality of drug testing in the transportation industry (1989) and that infectious diseases are a handicap in accordance with the 1973 Federal Rehabilitation Act (1987). The executive branch plays a major role in occupational medicine primarily through the Occupational Safety and Health Administration (OSHA), which issues standards based on a rule making process; the executive branch can also affect occupational medicine indirectly, as evidenced by President Reagan's Executive Order 12291 calling for Office of Management and Budget oversight of regulatory initiatives. The legislative branch enacts laws, conducts hearings, and requests reports on the operations of federal agencies. The judicial branch addresses occupational health issues when people affected by an executive ruling want to challenge the ruling; or in the case of the Supreme Court, when deliberating an issue over which two circuit courts of appeal have come to divergent opinions. The Occupational Medicine profession can participate in the political process through awareness of proposed legislation and by responding accordingly with letters, resolutions, or testimony. Similar options exist within the executive branch by participating in the rule-making process. A representative of the Governmental Affairs Committee, through periodic visits with key Washington representatives, can keep members of the American College of Occupational Medicine informed about federal legislative and regulatory activities. In appropriate cases, the organization can then take a formal position on governmental activities that affect the speciality.

Study on the thermal resistance in secondary particles chain of silica aerogel by molecular dynamics simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, M.; Department of Physics, University of Chinese Academy of Sciences, Beijing 100049; Qiu, L., E-mail: qiulin111@sina.com, E-mail: jzzhengxinghua@163.com

2014-09-07

In this article, molecular dynamics simulation was performed to study the heat transport in secondary particles chain of silica aerogel. The two adjacent particles as the basic heat transport unit were modelled to characterize the heat transfer through the calculation of thermal resistance and vibrational density of states (VDOS). The total thermal resistance of two contact particles was predicted by non-equilibrium molecular dynamics simulations (NEMD). The defects were formed by deleting atoms in the system randomly first and performing heating and quenching process afterwards to achieve the DLCA (diffusive limited cluster-cluster aggregation) process. This kind of treatment showed a verymore » reasonable prediction of thermal conductivity for the silica aerogels compared with the experimental values. The heat transport was great suppressed as the contact length increased or defect concentration increased. The constrain effect of heat transport was much significant when contact length fraction was in the small range (<0.5) or the defect concentration is in the high range (>0.5). Also, as the contact length increased, the role of joint thermal resistance played in the constraint of heat transport was increasing. However, the defect concentration did not affect the share of joint thermal resistance as the contact length did. VDOS of the system was calculated by numerical method to characterize the heat transport from atomic vibration view. The smaller contact length and greater defect concentration primarily affected the longitudinal acoustic modes, which ultimately influenced the heat transport between the adjacent particles.« less

Assessing potential abiotic and biotic complications of crayfish-induced gravel transport in experimental streams

NASA Astrophysics Data System (ADS)

Statzner, Bernhard; Peltret, Odile

2006-03-01

Biogeomorphology adds the element "biological dynamics" (of populations or communities) to chemical and physical geomorphic factors and thus complicates the framework of geomorphic processes. Such biological complications of the animal-induced transport of solids in streams should be particularly important in crayfish, as crayfish affect this transport through their overall activity and intraspecific aggression levels, which could be modified by shelter availability or the establishment of dominance hierarchies among individuals not knowing each other. Using experimental streams, we tested these hypotheses by measuring how shelter availability or residential crayfish group invasion by unknown individuals affected the impact of the crayfish Orconectes limosus on the (i) transport of gravel at baseflow (during 12 experimental days); (ii) sediment surface characteristics (after 12 days); and (iii) critical shear stress causing incipient gravel motion during simulated floods (after 12 days). The two potentially important factors shelter availability or residential group invasion negligibly affected the crayfish impact on gravel sediments, suggesting that habitat unfamiliarity (a third potentially important factor affecting crayfish activity) should increase the crayfish-induced sediment transport. Because habitat unfamiliarity is associated with sporadic long-distance migrations of a few crayfish individuals, this third factor should play a minor role in real streams, where crayfish biomass should be a key factor in relations with crayfish effects on sediments. Therefore, we combined the results of this study with those of previous crayfish experiments to assess how crayfish biomass could serve in modelling the gravel transport. Crayfish biomass explained 47% of the variability in the baseflow gravel transport and, in combination with the coefficient of variation of the bed elevation and algal cover, 72% of the variability in the critical gravel shear stress. These results encourage more research on the topic, as an increasing number of eliminations of abiotic and biotic factors that could complicate the animal-induced sediment transport in streams would facilitate the use of biological variables (e.g., bioturbator biomass) in future modelling of the transport of solids.

Terrace effects on soil erosion processes in a watershed of the loess plateau

USDA-ARS?s Scientific Manuscript database

Terraces in crop fields are one of the most important soil and water conservation measures that affect runoff and erosion processes in a watershed. In this paper, terrace effects on soil erosion and sediment transport in the upstream and middle sections of the Weihe River basin in the Loess Plateau ...

Impacts of fire on hydrology and erosion in steep mountain big sagebrush communities

Treesearch

Frederick B. Pierson; Peter R. Robichaud; Kenneth E. Spaeth; Corey A. Moffet

2003-01-01

Wildfire is an important ecological process and management issue on western rangelands. Major unknowns associated with wildfire are its affects on vegetation and soil conditions that influence hydrologic processes including infiltration, surface runoff, erosion, sediment transport, and flooding. Post wildfire hydrologic response was studied in big sagebrush plant...

Effects of rainfall and surface flow on chemical diffusion from soil to runoff water

USDA-ARS?s Scientific Manuscript database

Although basic processes of diffusion and convection have been used to quantify chemical transport from soil to surface runoff, there are little research results actually showing how these processes were affected by rainfall and surface flow. We developed a laboratory flow cell and a sequence of exp...

Peritoneal Fluid Transport rather than Peritoneal Solute Transport Associates with Dialysis Vintage and Age of Peritoneal Dialysis Patients

PubMed Central

Waniewski, Jacek; Antosiewicz, Stefan; Baczynski, Daniel; Poleszczuk, Jan; Pietribiasi, Mauro; Lindholm, Bengt; Wankowicz, Zofia

2016-01-01

During peritoneal dialysis (PD), the peritoneal membrane undergoes ageing processes that affect its function. Here we analyzed associations of patient age and dialysis vintage with parameters of peritoneal transport of fluid and solutes, directly measured and estimated based on the pore model, for individual patients. Thirty-three patients (15 females; age 60 (21–87) years; median time on PD 19 (3–100) months) underwent sequential peritoneal equilibration test. Dialysis vintage and patient age did not correlate. Estimation of parameters of the two-pore model of peritoneal transport was performed. The estimated fluid transport parameters, including hydraulic permeability (LpS), fraction of ultrasmall pores (α u), osmotic conductance for glucose (OCG), and peritoneal absorption, were generally independent of solute transport parameters (diffusive mass transport parameters). Fluid transport parameters correlated whereas transport parameters for small solutes and proteins did not correlate with dialysis vintage and patient age. Although LpS and OCG were lower for older patients and those with long dialysis vintage, αu was higher. Thus, fluid transport parameters—rather than solute transport parameters—are linked to dialysis vintage and patient age and should therefore be included when monitoring processes linked to ageing of the peritoneal membrane. PMID:26989432

Tracer-dilution experiments and solute-transport simulations for a mountain stream, Saint Kevin Gulch, Colorado. Water resources investigation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Broshears, R.E.; Bencala, K.E.; Kimball, B.A.

In 1986, the U.S. Geological Survey began an investigation to characterize within-stream hydrologic, chemical, and biological processes that influence the distribution and transport of hazardous constituents in the headwaters of the Arkansas River. The report describes the results of tracer-dilution experiments and associated solute-transport simulations for a 1804-meter stretch of Saint Kevin Gulch, a stream affected by acid mine drainage in Lake County, Colorado. The report describes transient changes in tracer (lithium chloride) concentration at six instream sites.

Planetary Surface-Atmosphere Interactions

NASA Astrophysics Data System (ADS)

Merrison, J. P.; Bak, E.; Finster, K.; Gunnlaugsson, H. P.; Holstein-Rathlou, C.; Knak Jensen, S.; Nørnberg, P.

2013-09-01

Planetary bodies having an accessible solid surface and significant atmosphere, such as Earth, Mars, Venus, Titan, share common phenomenology. Specifically wind induced transport of surface materials, subsequent erosion, the generation and transport of solid aerosols which leads both to chemical and electrostatic interaction with the atmosphere. How these processes affect the evolution of the atmosphere and surface will be discussed in the context of general planetology and the latest laboratory studies will be presented.

The Effect of Supply Disruptions on Customer Service Levels: a Case for Delivering Fertilizer Products using Maritime Transportation

NASA Astrophysics Data System (ADS)

Siswanto, N.; Kurniawati, U.; Wiratno, S. E.; Rusdiansyah, A.

2018-04-01

Delivering a product to customers can have a series of activities. It starts with the production of the product and then transporting it to the customers. However, uncontrollable and undesirable chance of disruption can occur during the delivery either at the production facility/supply side or in the process of transporting the product. Many researches has been conducting in the process of delivering the product. However not many considers these disruptions, although the disruptions has negative impacts on company such as reduce the profit, produce unbalanced inventory, and affect its reputation. This research will focus on the effect of supply disruption on customer service levels in the maritime transportation problem in order to maintain inventory level both in the supply and destination warehouses during predetermined planning horizon. The system considered consists of one loading port and two discharge ports for distributing one product. By using discrete event simulation, the result showed that supply disruption affects unbalanced inventory in the destination warehouses so that it will also influence company’s service level. The results show that there is a significant decreasing both in delivery service level, about 14%, and production service level, about 15% when the disruption occurs. A scenario to increase production rate is simulated to improved the service level.

[Construction of individual-based ecological model for Scomber japonicas at its early growth stages in East China Sea].

PubMed

Li, Yue-Song; Chen, Xin-Jun; Yang, Hong

2012-06-01

By adopting FVCOM-simulated 3-D physical field and based on the biological processes of chub mackerel (Scomber japonicas) in its early life history from the individual-based biological model, the individual-based ecological model for S. japonicas at its early growth stages in the East China Sea was constructed through coupling the physical field in March-July with the biological model by the method of Lagrange particle tracking. The model constructed could well simulate the transport process and abundance distribution of S. japonicas eggs and larvae. The Taiwan Warm Current, Kuroshio, and Tsushima Strait Warm Current directly affected the transport process and distribution of the eggs and larvae, and indirectly affected the growth and survive of the eggs and larvae through the transport to the nursery grounds with different water temperature and foods. The spawning grounds in southern East China Sea made more contributions to the recruitment to the fishing grounds in northeast East China Sea, but less to the Yangtze estuary and Zhoushan Island. The northwestern and southwestern parts of spawning grounds had strong connectivity with the nursery grounds of Cheju and Tsushima Straits, whereas the northeastern and southeastern parts of the spawning ground had strong connectivity with the nursery grounds of Kyushu and Pacific Ocean.

Factors Affecting the Corporate Decision-Making Process of Air Transport Manufacturers

NASA Technical Reports Server (NTRS)

Ollila, R. G.; Hill, J. D.; Noton, B. R.; Duffy, M. A.; Epstein, M. M.

1976-01-01

Fuel economy is a pivotal question influencing the future sale and utilization of commercial aircraft. The NASA Aircraft Energy Efficiency (ACEE) Program Office has a program intended to accelerate the readiness of advanced technologies for energy efficient aircraft. Because the decision to develop a new airframe or engine is a major financial hazard for manufacturers, it is important to know what factors influence the decision making process. A method is described for identifying and ranking individuals and organizations involved at each stage of commercial air transport development, and the barriers that must be overcome in adopting new technologies.

Vertical Transport of Aerosol Particles across Mountain Topography near the Los Angeles Basin

NASA Astrophysics Data System (ADS)

Murray, J. J.; Schill, S.; Freeman, S.; Bertram, T. H.; Lefer, B. L.

2015-12-01

Transport of aerosol particles is known to affect air quality and is largely dependent on the characteristic topography of the surrounding region. To characterize this transport, aerosol number distributions were collected with an Ultra-High Sensitivity Aerosol Spectrometer (UHSAS, DMT) during the 2015 NASA Student Airborne Research Program (SARP) in and around the Los Angeles Basin in Southern California. Increases in particle number concentration and size were observed over mountainous terrain north of Los Angeles County. Chemical analysis and meteorological lagrangian trajectories suggest orographic lifting processes, known as the "chimney effect". Implications for spatial transport and distribution will be discussed.

Surface complexation modeling

USDA-ARS?s Scientific Manuscript database

Adsorption-desorption reactions are important processes that affect the transport of contaminants in the environment. Surface complexation models are chemical models that can account for the effects of variable chemical conditions, such as pH, on adsorption reactions. These models define specific ...

Exposure Science and Its Applications for Effective Environmental Management

EPA Science Inventory

Exposure is the link between environmental pollution and human/ecosystem health. Exposure science entails understanding the scientific processes that affect source emissions, transport and fate, spatio-temporal variability in the ambient concentrations, levels of contaminants tha...

Momentum transport and non-local transport in heat-flux-driven magnetic reconnection in HEDP

NASA Astrophysics Data System (ADS)

Liu, Chang; Fox, Will; Bhattacharjee, Amitava

2016-10-01

Strong magnetic fields are readily generated in high-energy-density plasmas and can affect the heat confinement properties of the plasma. Magnetic reconnection can in turn be important as an inverse process, which destroys or reconfigures the magnetic field. Recent theory has demonstrated a novel physics regime for reconnection in high-energy-density plasmas where the magnetic field is advected into the reconnection layer by plasma heat flux via the Nernst effect. In this work we elucidate the physics of the electron dissipation layer in this heat-flux-driven regime. Through fully kinetic simulation and a new generalized Ohm's law, we show that momentum transport due to the heat-flux-viscosity effect provides the dissipation mechanism to allow magnetic field line reconnection. Scaling analysis and simulations show that the characteristic width of the current sheet in this regime is several electron mean-free-paths. These results additionally show a coupling between non-local transport and momentum transport, which in turn affects the dynamics of the magnetic field. This work was supported by the U.S. Department of Energy under Contract No. DE-SC0008655.

Redox Conditions Affect Ultrafast Exciton Transport in Photosynthetic Pigment-Protein Complexes.

PubMed

Allodi, Marco A; Otto, John P; Sohail, Sara H; Saer, Rafael G; Wood, Ryan E; Rolczynski, Brian S; Massey, Sara C; Ting, Po-Chieh; Blankenship, Robert E; Engel, Gregory S

2018-01-04

Pigment-protein complexes in photosynthetic antennae can suffer oxidative damage from reactive oxygen species generated during solar light harvesting. How the redox environment of a pigment-protein complex affects energy transport on the ultrafast light-harvesting time scale remains poorly understood. Using two-dimensional electronic spectroscopy, we observe differences in femtosecond energy-transfer processes in the Fenna-Matthews-Olson (FMO) antenna complex under different redox conditions. We attribute these differences in the ultrafast dynamics to changes to the system-bath coupling around specific chromophores, and we identify a highly conserved tyrosine/tryptophan chain near the chromophores showing the largest changes. We discuss how the mechanism of tyrosine/tryptophan chain oxidation may contribute to these differences in ultrafast dynamics that can moderate energy transfer to downstream complexes where reactive oxygen species are formed. These results highlight the importance of redox conditions on the ultrafast transport of energy in photosynthesis. Tailoring the redox environment may enable energy transport engineering in synthetic light-harvesting systems.

Effect of flow on bacterial transport and biofilm formation in saturated porous media

NASA Astrophysics Data System (ADS)

Rusconi, R.

2016-12-01

Understanding the transport of bacteria in saturated porous media is crucial for many applications ranging from the management of pumping wells subject to bio-clogging to the design of new bioremediation schemes for subsurface contamination. However, little is known about the spatial distribution of bacteria at the pore scale, particularly when small-scale heterogeneities - always present even in seemingly homogeneous aquifers - lead to preferential pathways for groundwater flow. In particular, the coupling of flow and motility has recently been shown to strongly affect bacterial transport1, and this leads us to predict that subsurface flow may strongly affect the dispersal of bacteria and the formation of biofilms in saturated aquifers. I present here microfluidic experiments combined with numerical simulations to show how the topological features of the flow correlate with bacterial concentration and promote the attachment of bacteria to specific regions of the pore network, which will ultimately influence the formations of biofilms. These results highlight the intimate link between small-scale biological processes and transport in porous media.

Does lipophilicity affect the effectiveness of a transmembrane anion transporter? Insight from squaramido-functionalized bis(choloyl) conjugates.

PubMed

Li, Zhi; Deng, Li-Qun; Chen, Jin-Xiang; Zhou, Chun-Qiong; Chen, Wen-Hua

2015-12-28

Six squaramido-functionalized bis(choloyl) conjugates were synthesized and fully characterized on the basis of NMR ((1)H and (13)C) and ESI MS (LR and HR) data. Their transmembrane anionophoric activity was investigated in detail by means of chloride ion selective electrode technique and pyranine assay. The data indicate that this set of compounds is capable of promoting the transmembrane transport of anions presumably via proton/anion symport and anion exchange processes, and that lipophilicity in terms of clog P from 3.90 to 8.32 affects the apparent ion transport rate in a concentration-dependent fashion. Detailed kinetic analysis on the data obtained from both the chloride efflux and pH discharge experiments reveals that there may exist an optimum clog P range for the intrinsic ion transport rate. However, lipophilicity exhibits little effect on the effectiveness of this set of compounds in terms of either k2/Kdiss or EC50 values.

Modeling the Influence of Different Processes on Iron Solubilization in Mineral Aerosols: From the Gobi Desert to the North Pacific Ocean

NASA Astrophysics Data System (ADS)

Meskhidze, N.; Chameides, W. L.; Chen, G.

2002-12-01

Atmospheric transport is the only known means to deliver dissolved iron from the continents to remote oceanic areas. Dissolved iron is one of the necessary nutrients for photosynthesis of microscopic, single-celled marine organisms (phytoplankton) that grow abundantly in oceans around the world. Alteration of dissolved iron fluxes may substantially affect ocean ecosystem productivity and even exert a global-scale influence on climate by affecting the rate at which atmospheric CO2 is fixed by oceanic biota. On continents, iron mainly exists in forms of highly insoluble minerals (iron-oxides and iron-aluminosilicates) and the processes that can solubilize iron in mineral aerosols during their long-range transport remain poorly understood. In this work we attempt to elucidate the key processes that control the solubilization of iron in mineral aerosols using a simple Lagrangian box model to simulate the transport and chemical alteration of iron-containing mineral aerosols as they are transported from the east coast of China to the remote western North Pacific Ocean. Model parameters and initial conditions are set using a combination of soil and aerosol data from the Gobi Desert, as well as from measurements made during specific PEM-West B flights that encountered dust storm plumes over the Pacific Ocean that had originated in China. Our preliminary results indicate that the amount of acidic pollutants in the air along the dust transport pathways can have a significant effect on the amount of iron that is solubilized in advecting mineral aerosols. This suggests that there may be a link between the flux of the dissolved iron to the remote North Pacific Ocean and the rate at which pollutants such as sulfur dioxide, nitrogen oxides, and ammonia are emitted in East Asia.

Process analysis of regional aerosol pollution during spring in the Pearl River Delta region, China

NASA Astrophysics Data System (ADS)

Fan, Qi; Lan, Jing; Liu, Yiming; Wang, Xuemei; Chan, Pakwai; Hong, Yingying; Feng, Yerong; Liu, Yexin; Zeng, Yanjun; Liang, Guixiong

2015-12-01

A numerical simulation analysis was performed for three air pollution episodes in the Pearl River Delta (PRD) region during March 2012 using the third-generation air quality modeling system Models-3/CMAQ. The results demonstrated that particulate matter was the primary pollutant for all three pollution episodes and was accompanied by relatively low visibility in the first two episodes. Weather maps indicate that the first two episodes occurred under the influence of warm, wet southerly air flow systems that led to high humidity throughout the region. The liquid phase reaction of gaseous pollutants resulted in the generation of fine secondary particles, which were identified as the primary source of pollution in the first two episodes. The third pollution episode occurred during a warming period following a cold front. Relative humidity was lower during this episode, and coarse particles were the major pollution contributor. Results of process analysis indicated that emissions sources, horizontal transport and vertical transport were the primary factors affecting pollutant concentrations within the near-surface layer during all three episodes, while aerosol processes, cloud processes, horizontal transport and vertical transport had greater influence at approximately 900 m above ground. Cloud processes had a greater impact during the first two pollution episodes because of the higher relative humidity. In addition, by comparing pollution processes from different cities (Guangzhou and Zhongshan), the study revealed that the first two pollution episodes were the result of local emissions within the PRD region and transport between surrounding cities, while the third episode exhibited prominent regional pollution characteristics and was the result of regional pollutant transport.

Investigating ebullition in a sand column using dissolved gas analysis and reactive transport modeling

USGS Publications Warehouse

Amos, Richard T.; Mayer, K. Ulrich

2006-01-01

Ebullition of gas bubbles through saturated sediments can enhance the migration of gases through the subsurface, affect the rate of biogeochemical processes, and potentially enhance the emission of important greenhouse gases to the atmosphere. To better understand the parameters controlling ebullition, methanogenic conditions were produced in a column experiment and ebullition through the column was monitored and quantified through dissolved gas analysis and reactive transport modeling. Dissolved gas analysis showed rapid transport of CH4 vertically through the column at rates several times faster than the bromide tracer and the more soluble gas CO2, indicating that ebullition was the main transport mechanism for CH4. An empirically derived formulation describing ebullition was integrated into the reactive transport code MIN3P allowing this process to be investigated on the REV scale in a complex geochemical framework. The simulations provided insights into the parameters controlling ebullition and show that, over the duration of the experiment, 36% of the CH4 and 19% of the CO2 produced were transported to the top of the column through ebullition.

Railroad system of Texas: A component of the state and national transportation infrastructure. Research report, September 1996--November 1998

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roop, S.S.; Warner, J.E.; Rosa, D.

1998-11-01

Railroads continue to play an important role in the Texas transportation system. This study addresses the potential for implementing a rail planning process in the Texas Department of Transportation. The study is documented in three reports, produced in coordinated and parallel efforts by the Center for Transportation Research and the Texas Transportation Institute. This report documents the work performed by TTI, whereby a rail planning framework is presented which formalizes the planning process and presents the key elements as a series of discrete and logical steps. These steps may be used to guide TxDOT in the formation of goals, identificationmore » of issues and affected parties, selection of appropriate analytical methodologies, location of data sources, and implementation of results. The report also presents an in-depth discussion of several key issues facing transportation agencies. These include rail line abandonment, intermodal service planning, and urban rail rationalization. A discussion of the Texas rail system covers the Class 1 railroads, shortline railroads, Amtrak, and the Mexican rail system.« less

Kin5 Knockdown in Tetrahymena thermophila Using RNAi Blocks Cargo Transport of Gef1

PubMed Central

Awan, Aashir; Bell, Aaron J.; Satir, Peter

2009-01-01

A critical process that builds and maintains the eukaryotic cilium is intraflagellar transport (IFT). This process utilizes members of the kinesin-2 superfamily to transport cargo into the cilium (anterograde transport) and a dynein motor for the retrograde traffic. Using a novel RNAi knockdown method, we have analyzed the function of the homodimeric IFT kinesin-2, Kin5, in Tetrahymena ciliary transport. In RNAi transformants, Kin5 was severely downregulated and disappeared from the cilia, but cilia did not resorb, although tip structure was affected. After deciliation of the knockdown cell, cilia regrew and cells swam, which suggested that Kin5 is not responsible for the trafficking of axonemal precursors to build the cilium, but could be transporting molecules that act in ciliary signal transduction, such as guanine nucleotide exchange proteins (GEFs). Gef1 is a Tetrahymena ciliary protein, and current coimmunoprecipitation and immunofluorescence studies showed that it is absent in regrowing cilia of the knockdown cells lacking ciliary Kin5. We suggest that one important cargo of Kin5 is Gef1 and knockdown of Kin5 results in cell lethality. PMID:19290045

NATURALIST'S APPLICATION OF A PROMISING TURBULENCE MODEL

EPA Science Inventory

Turbulence has infinite applications to the biological sciences, affecting distributions, transport, feeding, mating, and other biological processes. The topic is like the universe for which five successive magnefications are required to finally focus on a topic that can be grasp...

WORKSHOP ON MONITORING OXIDATION-REDUCTION PROCESSES FOR GROUND-WATER RESTORATION

EPA Science Inventory

Redox conditions are among the most important parameters for controlling contaminant transport and fate in ground-water systems. Oxidation-reduction (redox) reactions mediate the chemical behavior of both inorganic and organic chemical constituents by affecting solubility, rea...

An approach to understanding hydrologic connectivity on the hillslope and the implications for nutrient transport

USGS Publications Warehouse

Stieglitz, M.; Shaman, J.; McNamara, J.; Engel, V.; Shanley, J.; Kling, G.W.

2003-01-01

Hydrologic processes control much of the export of organic matter and nutrients from the land surface. It is the variability of these hydrologic processes that produces variable patterns of nutrient transport in both space and time. In this paper, we explore how hydrologic "connectivity" potentially affects nutrient transport. Hydrologic connectivity is defined as the condition by which disparate regions on the hillslope are linked via subsurface water flow. We present simulations that suggest that for much of the year, water draining through a catchment is spatially isolated. Only rarely, during storm and snowmelt events when antecedent soil moisture is high, do our simulations suggest that mid-slope saturation (or near saturation) occurs and that a catchment connects from ridge to valley. Observations during snowmelt at a small headwater catchment in Idaho are consistent with these model simulations. During early season discharge episodes, in which the mid-slope soil column is not saturated, the electrical conductivity in the stream remains low, reflecting a restricted, local (lower slope) source of stream water and the continued isolation of upper and mid-slope soil water and nutrients from the stream system. Increased streamflow and higher stream water electrical conductivity, presumably reflecting the release of water from the upper reaches of the catchment, are simultaneously observed when the mid-slope becomes sufficiently wet. This study provides preliminary evidence that the seasonal timing of hydrologic connectivity may affect a range of ecological processes, including downslope nutrient transport, C/N cycling, and biological productivity along the toposequence. A better elucidation of hydrologic connectivity will be necessary for understanding local processes as well as material export from land to water at regional and global scales. Copyright 2003 by the American Geophysical Union.

Natural gas and CO2 price variation: impact on the relative cost-efficiency of LNG and pipelines.

PubMed

Ulvestad, Marte; Overland, Indra

2012-06-01

THIS ARTICLE DEVELOPS A FORMAL MODEL FOR COMPARING THE COST STRUCTURE OF THE TWO MAIN TRANSPORT OPTIONS FOR NATURAL GAS: liquefied natural gas (LNG) and pipelines. In particular, it evaluates how variations in the prices of natural gas and greenhouse gas emissions affect the relative cost-efficiency of these two options. Natural gas is often promoted as the most environmentally friendly of all fossil fuels, and LNG as a modern and efficient way of transporting it. Some research has been carried out into the local environmental impact of LNG facilities, but almost none into aspects related to climate change. This paper concludes that at current price levels for natural gas and CO 2 emissions the distance from field to consumer and the volume of natural gas transported are the main determinants of transport costs. The pricing of natural gas and greenhouse emissions influence the relative cost-efficiency of LNG and pipeline transport, but only to a limited degree at current price levels. Because more energy is required for the LNG process (especially for fuelling the liquefaction process) than for pipelines at distances below 9100 km, LNG is more exposed to variability in the price of natural gas and greenhouse gas emissions up to this distance. If the prices of natural gas and/or greenhouse gas emission rise dramatically in the future, this will affect the choice between pipelines and LNG. Such a price increase will be favourable for pipelines relative to LNG.

Natural gas and CO2 price variation: impact on the relative cost-efficiency of LNG and pipelines

PubMed Central

Ulvestad, Marte; Overland, Indra

2012-01-01

This article develops a formal model for comparing the cost structure of the two main transport options for natural gas: liquefied natural gas (LNG) and pipelines. In particular, it evaluates how variations in the prices of natural gas and greenhouse gas emissions affect the relative cost-efficiency of these two options. Natural gas is often promoted as the most environmentally friendly of all fossil fuels, and LNG as a modern and efficient way of transporting it. Some research has been carried out into the local environmental impact of LNG facilities, but almost none into aspects related to climate change. This paper concludes that at current price levels for natural gas and CO2 emissions the distance from field to consumer and the volume of natural gas transported are the main determinants of transport costs. The pricing of natural gas and greenhouse emissions influence the relative cost-efficiency of LNG and pipeline transport, but only to a limited degree at current price levels. Because more energy is required for the LNG process (especially for fuelling the liquefaction process) than for pipelines at distances below 9100 km, LNG is more exposed to variability in the price of natural gas and greenhouse gas emissions up to this distance. If the prices of natural gas and/or greenhouse gas emission rise dramatically in the future, this will affect the choice between pipelines and LNG. Such a price increase will be favourable for pipelines relative to LNG. PMID:24683269

Meteorological Processes Affecting the Transport of Emissions from the Navajo Generating Station to Grand Canyon National Park.

NASA Astrophysics Data System (ADS)

Lindsey, Charles G.; Chen, Jun; Dye, Timothy S.; Willard Richards, L.; Blumenthal, Donald L.

1999-08-01

During the 1990 Navajo Generating Station (NGS) Winter Visibility Study, a network of surface and upper-air meteorological measurement systems was operated in and around Grand Canyon National Park to investigate atmospheric processes in complex terrain that affected the transport of emissions from the nearby NGS. This network included 15 surface monitoring stations, eight balloon sounding stations (equipped with a mix of rawinsonde, tethersonde, and Airsonde sounding systems), three Doppler radar wind profilers, and four Doppler sodars. Measurements were made from 10 January through 31 March 1990. Data from this network were used to prepare objectively analyzed wind fields, trajectories, and streak lines to represent transport of emissions from the NGS, and to prepare isentropic analyses of the data. The results of these meteorological analyses were merged in the form of a computer animation that depicted the streak line analyses along with measurements of perfluorocarbon tracer, SO2, and sulfate aerosol concentrations, as well as visibility measurements collected by an extensive surface monitoring network. These analyses revealed that synoptic-scale circulations associated with the passage of low pressure systems followed by the formation of high pressure ridges accompanied the majority of cases when NGS emittants appeared to be transported to the Grand Canyon. The authors' results also revealed terrain influences on transport within the topography of the study area, especially mesoscale flows inside the Lake Powell basin and along the plain above the Marble Canyon.

Establishment and Use of New MDCK II Cells Overexpressing Both UGT1A1 and MRP2 to Characterize Flavonoid Metabolism via the Glucuronidation Pathway

PubMed Central

Wang, Meifang; Yang, Guangyi; He, Yu; Xu, Beibei; Zeng, Min; Yin, Taijun; Gao, Song; Hu, Ming

2017-01-01

Scope The purpose of this study is to characterize how overexpression of an efflux transporter and an UDP-glucuronosyltransferase (UGT) affects the cellular kinetics of glucuronidation processes. Methods and Results A new MDCK II cell line overexpressing both MRP2 and UGT1A1 (MDCKII-UGT1A1/MRP2 cells) was developed and used to determine how overexpression of an efflux transporter affects the kinetics of cellular flavonoid glucuronide production. The results showed that most model flavonoids (from a total of 13) were mainly metabolized into glucuronides in the MDCKII-UGT1A1/MRP2 cells and the glucuronides were rapidly excreted. Flavonoids with three or fewer hydroxyl group at 7, 3′ or 6 hydroxyl group were also metabolized into sulfates. Mechanistic studies using 7-hydroxylflavone showed that its glucuronide was mainly (90%) effluxed by BCRP with a small (10%) but significant contribution from MRP2. Maximal velocity of glucuronide production MDCK-MRP2/UGT1A1 cells showed a fairly good correlation (R2 >0.8) with those derived using UGT1A1 microsomes, but other kinetic parameters (e.g., Km) did not correlate. Conclusion Overexpression of a second efficient efflux transporter did not significantly change the fact that BCRP is the dominant transporter for flavonoid glucuronide nor did it diminish the influence of the efflux transporter as the “gate keeper” of glucuronidation process. PMID:26833852

Quantifying solute transport processes: are chemically "conservative" tracers electrically conservative?

USGS Publications Warehouse

Singha, Kamini; Li, Li; Day-Lewis, Frederick D.; Regberg, Aaron B.

2012-01-01

The concept of a nonreactive or conservative tracer, commonly invoked in investigations of solute transport, requires additional study in the context of electrical geophysical monitoring. Tracers that are commonly considered conservative may undergo reactive processes, such as ion exchange, thus changing the aqueous composition of the system. As a result, the measured electrical conductivity may reflect not only solute transport but also reactive processes. We have evaluated the impacts of ion exchange reactions, rate-limited mass transfer, and surface conduction on quantifying tracer mass, mean arrival time, and temporal variance in laboratory-scale column experiments. Numerical examples showed that (1) ion exchange can lead to resistivity-estimated tracer mass, velocity, and dispersivity that may be inaccurate; (2) mass transfer leads to an overestimate in the mobile tracer mass and an underestimate in velocity when using electrical methods; and (3) surface conductance does not notably affect estimated moments when high-concentration tracers are used, although this phenomenon may be important at low concentrations or in sediments with high and/or spatially variable cation-exchange capacity. In all cases, colocated groundwater concentration measurements are of high importance for interpreting geophysical data with respect to the controlling transport processes of interest.

Studies of the kallikrein-kinin system and prostaglandins in epithelial ion transport.

PubMed

Margolius, H S; Halushka, P V; Chao, J; Miller, D H; Cuthbert, A W; Spayne, J A

1985-01-01

Tissue kallikrein of colon mucosa is synthesized rapidly, and this synthetic process can now be examined in relation to hormonal or dietary manipulations or pathological circumstances that affect intestinal ion transport. Although the identical renal tissue enzyme is known to be enriched in membranes of distal convoluted tubular epithelial cells, the precise localization of the intestinal enzyme is uncertain. An understanding of the intestinal cellular locale of kallikrein will help in defining its local role. That tissue kallikreins can be inhibited by monovalent cations and some drugs (e.g., amiloride) and that kallikrein inhibitors affect cation transport across epithelial surfaces containing such enzymes must be reconciled with the new observations of kinin-induced chloride secretion. Extracellular calcium, eicosanoid synthesis, and cyclic nucleotide production are involved in the secretory response to kinins, although an absolute requirement for intact eicosanoid synthesis may not exist.

Membrane Cholesterol in Skeletal Muscle: A Novel Player in Excitation-Contraction Coupling and Insulin Resistance

PubMed Central

Barrientos, G.; Sánchez-Aguilera, P.; Jaimovich, E.; Hidalgo, C.

2017-01-01

Membrane cholesterol is critical for signaling processes in a variety of tissues. We will address here current evidence supporting an emerging role of cholesterol on excitation-contraction coupling and glucose transport in skeletal muscle. We have centered our review on the transverse tubule system, a complex network of narrow plasma membrane invaginations that propagate membrane depolarization into the fiber interior and allow nutrient delivery into the fibers. We will discuss current evidence showing that transverse tubule membranes have remarkably high cholesterol levels and we will address how modifications of cholesterol content influence excitation-contraction coupling. In addition, we will discuss how membrane cholesterol levels affect glucose transport by modulating the insertion into the membrane of the main insulin-sensitive glucose transporter GLUT4. Finally, we will address how the increased membrane cholesterol levels displayed by obese animals, which also present insulin resistance, affect these two particular skeletal muscle functions. PMID:28367451

Structural control of mixed ionic and electronic transport in conducting polymers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rivnay, Jonathan; Inal, Sahika; Collins, Brian A.

Poly(3,4-ethylenedioxythiophene) doped with poly(styrenesulfonate), PEDOT:PSS, has been utilized for over two decades as a stable, solution-processable hole conductor. While its hole transport properties have been the subject of intense investigation, recent work has turned to PEDOT:PSS as a mixed ionic/electronic conductor in applications including bioelectronics, energy storage and management, and soft robotics. Conducting polymers can efficiently transport both holes and ions when sufficiently hydrated, however, little is known about the role of morphology on mixed conduction. Here, we show that bulk ionic and electronic mobilities are simultaneously affected by processing-induced changes in nano- and meso-scale structure in PEDOT:PSS films. Wemore » quantify domain composition, and find that domain purification on addition of dispersion co-solvents limits ion mobility, even while electronic conductivity improves. We show that an optimal morphology allows for the balanced ionic and electronic transport that is critical for prototypical mixed conductor devices. As a result, these findings may pave the way for the rational design of polymeric materials and processing routes to enhance devices reliant on mixed conduction.« less

Structural control of mixed ionic and electronic transport in conducting polymers

DOE PAGES

Rivnay, Jonathan; Inal, Sahika; Collins, Brian A.; ...

2016-04-19

Poly(3,4-ethylenedioxythiophene) doped with poly(styrenesulfonate), PEDOT:PSS, has been utilized for over two decades as a stable, solution-processable hole conductor. While its hole transport properties have been the subject of intense investigation, recent work has turned to PEDOT:PSS as a mixed ionic/electronic conductor in applications including bioelectronics, energy storage and management, and soft robotics. Conducting polymers can efficiently transport both holes and ions when sufficiently hydrated, however, little is known about the role of morphology on mixed conduction. Here, we show that bulk ionic and electronic mobilities are simultaneously affected by processing-induced changes in nano- and meso-scale structure in PEDOT:PSS films. Wemore » quantify domain composition, and find that domain purification on addition of dispersion co-solvents limits ion mobility, even while electronic conductivity improves. We show that an optimal morphology allows for the balanced ionic and electronic transport that is critical for prototypical mixed conductor devices. As a result, these findings may pave the way for the rational design of polymeric materials and processing routes to enhance devices reliant on mixed conduction.« less

The Effect of Suspended Sediment Transport and Deposition on Streambed Clogging Under Losing and Gaining Flow Conditions

NASA Astrophysics Data System (ADS)

Fox, A.; Packman, A. I.; Preziosi-Ribero, A.; Li, A.; Arnon, S.

2017-12-01

Sediment transport and deposition in streams can affect streambed hydraulic characteristics due to clogging, reduce water fluxes through the hyporheic zone, and thus expected to affect biogeochemical processes. Processes affecting deposition of suspended particles were systematically studied under various overlying velocities but without taking into account the interactions with groundwater. This is despite the fact that the interaction with groundwater were shown to play an important role in deposition patterns of fine sediments in field studies. The objective of this study was to evaluate the effect of losing and gaining fluxes on suspended sediment depositional patterns and on hyporheic exchange fluxes. Experiments were conducted in a laboratory flume system (640 cm long and 30 cm wide) that has a capacity to enforce losing or gaining flow conditions. The flume was packed with homogenous sand, while suspended sediment deposition was evaluated by adding kaolinite particles to the water and following the deposition rate by particle disappearance from the bulk water. Consecutive additions of kaolinite were done, while hyporheic exchange fluxes were evaluated by conducting NaCl tracer experiments between each kaolinite additions. Furthermore, dye injections were used to visualize the flow patterns in the streambed using time-lapse photography through the transparent sidewalls of the flume. Hyporheic exchange and particle tracking simulations were done to assess the results of particle deposition and feedbacks between hyporheic flow, particle transport, and streambed clogging. Experimental results showed that the deposition of clay decreases with increasing amount of clay concentration in the sediment. Hyporheic exchange flux decreases linearly with increasing amount of clay added to the system and the region of active hyporheic exchange was confined to the upper part of the sediment. Understanding the particle deposition mechanisms under losing and gaining flow condition are expected to improve our predictive ability to capture the dynamics of streambed characteristics, which has implications to sediment transport, biogeochemical processes and hyporheic ecology.

Mechanisms and Control of Phloem Transport in Trees: Fast and Slow - Sink and Source

NASA Astrophysics Data System (ADS)

Gessler, Arthur; Hagedorn, Frank; Galiano, Lucia; Schaub, Marcus; Joseph, Jobin; Arend, Matthias; Hommel, Robert; Kayler, Zachary

2017-04-01

Trees are large global stores of carbon that will be affected by increased carbon dioxide levels and climate change in the future. However, at present we cannot properly predict the carbon balance of forests as we lack knowledge on how plant physiological processes and especially the transport of carbon within the plant interact with environmental drivers and ecosystem-scale processes. The central conveyor belt for C allocation and distribution within the tree is the phloem and its functionality under environmental stress (esp. drought) is important for the avoidance of C starvation. This paper addresses the distribution of new assimilates within the plant, and sheds light on phloem transport mechanisms and transport control using 13C pulse labelling techniques. We provide experimental evidence that at least two mechanisms are employed to couple C sink processes to assimilation. We observed a fast increase of belowground respiration with the onset of photosynthesis, which we assume is induced by pressure concentration waves travelling through the phloem. A second, much later occurring peak in respiration is fueled by new 13C labeled assimilates. Moreover, we relate phloem transport velocity and intensity of labelled 13C assimilates to drought stress intensity and give indication how sink rather than source control might affect phloem transport in trees. During drought, net photosynthesis, soil respiration and the allocation of recent assimilates below ground were reduced. Carbohydrates accumulated in metabolically resting roots but not in leaves, indicating sink control of the tree carbon balance. After drought release, soil respiration recovered faster than assimilation and CO2 fluxes exceeded those in continuously watered trees for months. This stimulation was related to greater assimilate allocation to and metabolization in the rhizosphere. These findings show that trees prioritize the investment of assimilates below ground, probably to regain root functions after drought and indicate that sink activity governs carbon allocation not only during drought stress but also after stress release.

Physiological response of invasive mussel Limnoperna fortunei (Dunker, 1857) (Bivalvia: Mytilidae) submitted to transport and experimental conditions.

PubMed

Cordeiro, N I S; Andrade, J T M; Montresor, L C; Luz, D M R; Araújo, J M; Martinez, C B; Pinheiro, J; Vidigal, T H D A

2017-03-01

Successful animal rearing under laboratory conditions for commercial processes or laboratory experiments is a complex chain that includes several stressors (e.g., sampling and transport) and incurs, as a consequence, the reduction of natural animal conditions, economic losses and inconsistent and unreliable biological results. Since the invasion of the bivalve Limnoperna fortunei (Dunker, 1857) in South America, several studies have been performed to help control and manage this fouling pest in industrial plants that use raw water. Relatively little attention has been given to the laboratory rearing procedure of L. fortunei, its condition when exposed to a stressor or its acclimation into laboratory conditions. Considering this issue, the aims of this study are to (i) investigate L. fortunei physiological responses when submitted to the depuration process and subsequent air transport (without water/dry condition) at two temperatures, based on glycogen concentrations, and (ii) monitor the glycogen concentrations in different groups when maintained for 28 days under laboratory conditions. Based on the obtained results, depuration did not affect either of the groups when they were submitted to approximately eight hours of transport. The variation in glycogen concentration among the specimens that were obtained from the field under depurated and non-depurated conditions was significant only in the first week of laboratory growth for the non-depurated group and in the second week for the depurated group. In addition, the tested temperature did not affect either of the groups that were submitted to transport. The glycogen concentrations were similar to those of the specimens that were obtained from the field in third week, which suggests that the specimens acclimated to laboratory conditions during this period of time. Thus, the results indicate that the air transport and acclimation time can be successfully incorporated into experimental studies of L. fortunei. Finally, the tolerance of L. fortunei specimens to the stressor tested herein can help us understand the invasive capacity of this mussel during the establishment process.

BIOPLUME MODEL FOR CONTAMINANT TRANSPORT AFFECTED BY OXYGEN LIMITED BIODEGRADATION

EPA Science Inventory

Many of the organic pollutants entering ground water are potentially biodegradable in the subsurface. This potential has been demonstrated in aquifers contaminated by wood-creosoting process wastes. The persistence of many of these organic compounds in the subsurface indicated ...

Alzheimer's disease: neuroprogesterone, epoxycholesterol, and ABC transporters as determinants of neurodesmosterol tissue levels and its role in amyloid protein processing.

PubMed

Javitt, Norman B

2013-01-01

Evidence is emerging that during the development of Alzheimer's disease (AD), changes in the synthesis and metabolism of cholesterol and progesterone are occurring that may or may not affect the progression of the disease. The concept arose from the recognition that dehydrocholesterol 24-reductase (DHCR24/Seladin-1), one of the nine enzymes in the endoplasmic reticulum that determines the transformation of lanosterol to cholesterol, is selectively reduced in late AD. As a consequence, the tissue level of desmosterol increases, affecting the expression of ABC transporters and the structure of lipid rafts, both determinants of amyloid-β processing. However, the former effect is considered beneficial and the latter detrimental to processing. Other determinants of desmosterol tissue levels are 24,25 epoxycholesterol and the ABCG1 and ABCG4 transporters. Progesterone and its metabolites are determinants of tissue levels of desmosterol and several other sterol intermediates in cholesterol synthesis. Animal models indicate marked elevations in the tissue levels of these sterols at early time frames in the progression of neurodegenerative diseases. The low level of neuroprogesterone and metabolites in AD are consonant with the low level of desmosterol and may have a role in amyloid-β processing. The sparse data that has accumulated appears to be a sufficient basis for proposing a systematic evaluation of the biologic roles of sterol intermediates in the slowly progressive neurodegeneration characteristic of AD.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olsen, C.R.; Larsen, I.L.; Lowry, P.D.

Radionuclides released into the Susquehanna--Chesapeake System from the Three Mile Island, Peach Bottom, and Calvert Cliffs nuclear power plants are partitioned among dissolved, particulate, and biological phases and may thus exist in a number of physical and chemical forms. In this project, we have measured the dissolved and particulate distributions of fallout /sup 137/Cs; reactor-released /sup 137/Cs, /sup 134/Cs, /sup 65/Zn, /sup 60/Co, and /sup 58/Co; and naturally occurring /sup 7/Be and /sup 210/Pb in the lower Susquehanna River and Upper Chesapeake Bay. In addition, we chemically leached suspended particles and bottom sediments in the laboratory to determine radionuclide partitioningmore » among different particulate-sorbing phases to complement the site-specific field data. This information has been used to document the important geochemical processes that affect the transport, sorption, distribution, and fate of reactor-released radionuclides (and by analogy, other trace contaminants) in this river-estuarine system. Knowledge of the mechanisms, kinetic factors, and processes that affect radionuclide distributions is crucial for predicting their biological availability, toxicity, chemical behavior, physical transport, and accumulation in aquatic systems. The results from this project provide the information necessary for developing accurate radionuclide-transport and biological-uptake models. 76 refs., 12 figs.« less

Vertical transportation systems embedded on shuffled frog leaping algorithm for manufacturing optimisation problems in industries.

PubMed

Aungkulanon, Pasura; Luangpaiboon, Pongchanun

2016-01-01

Response surface methods via the first or second order models are important in manufacturing processes. This study, however, proposes different structured mechanisms of the vertical transportation systems or VTS embedded on a shuffled frog leaping-based approach. There are three VTS scenarios, a motion reaching a normal operating velocity, and both reaching and not reaching transitional motion. These variants were performed to simultaneously inspect multiple responses affected by machining parameters in multi-pass turning processes. The numerical results of two machining optimisation problems demonstrated the high performance measures of the proposed methods, when compared to other optimisation algorithms for an actual deep cut design.

Global transcriptome analysis of eukaryotic genes affected by gromwell extract.

PubMed

Bang, Soohyun; Lee, Dohyun; Kim, Hanhe; Park, Jiyong; Bahn, Yong-Sun

2014-02-01

Gromwell is known to have diverse pharmacological, cosmetic and nutritional benefits for humans. Nevertheless, the biological influence of gromwell extract (GE) on the general physiology of eukaryotic cells remains unknown. In this study a global transcriptome analysis was performed to identify genes affected by the addition of GE with Cryptococcus neoformans as the model system. In response to GE treatment, genes involved in signal transduction were immediately regulated, and the evolutionarily conserved sets of genes involved in the core cellular functions, including DNA replication, RNA transcription/processing and protein translation/processing, were generally up-regulated. In contrast, a number of genes involved in carbohydrate metabolism and transport, inorganic ion transport and metabolism, post-translational modification/protein turnover/chaperone functions and signal transduction were down-regulated. Among the GE-responsive genes that are also evolutionarily conserved in the human genome, the expression patterns of YSA1, TPO2, CFO1 and PZF1 were confirmed by northern blot analysis. Based on the functional characterization of some GE-responsive genes, it was found that GE treatment may promote cellular tolerance against a variety of environmental stresses in eukaryotes. GE treatment affects the expression levels of a significant portion of the Cryptococcus genome, implying that GE significantly affects the general physiology of eukaryotic cells. © 2013 Society of Chemical Industry.

Procurement of a fully licensed radioisotope thermoelectric generator transportation system

NASA Astrophysics Data System (ADS)

Adkins, Harold E.; Bearden, Thomas E.

The present transportation system for radioisotope thermoelectric generators and heater units is being developed to comply with all applicable U.S. DOT regulations, including a doubly-contained 'bell jar' concept for the required double-containment of plutonium. Modifications in handling equipment and procedures are entailed by this novel packaging design, and will affect high-capacity forklifts, overhead cranes, He-backfilling equipment, etc. Attention is given to the design constraints involved, and to the Federal procurement process.

The Importance of Fine-Scale Flow Processes and Food Availability in the Maintenance of Soft-Sediment Communities

DTIC Science & Technology

1993-02-01

of the bottom sediments at a given site. From long time -series measurements of the flow and sediment-transport environment on Georges Bank...significantly affect flows and sediment transport depends, in part, on timing . Biological effects on seafloor stability may be more pronounced, for example...potentially can enhance particle retention time within the tube bed via skimming flow (described earlier), although it is unclear if natural populations of

Coordination of pincer grasp and transport after mechanical perturbation of the index finger

PubMed Central

Schettino, Luis F.; Adamovich, Sergei V.

2017-01-01

Our understanding of reach-to-grasp movements has evolved from the original formulation of the movement as two semi-independent visuomotor channels to one of interdependence. Despite a number of important contributions involving perturbations of the reach or the grasp, some of the features of the movement, such as the presence or absence of coordination between the digits during the pincer grasp and the extent of spatio-temporal interdependence between the transport and the grasp, are still unclear. In this study, we physically perturbed the index finger into extension during grasping closure on a minority of trials to test whether modifying the movement of one digit would affect the movement of the opposite digit, suggestive of an overarching coordinative process. Furthermore, we tested whether disruption of the grasp results in the modification of kinematic parameters of the transport. Our results showed that a continuous perturbation to the index finger affected wrist velocity but not lateral displacement. Moreover, we found that the typical flexion of the thumb observed in nonperturbed trials was delayed until the index finger counteracted the extension force. These results suggest that physically perturbing the grasp modifies the kinematics of the transport component, indicating a two-way interdependence of the reach and the grasp. Furthermore, a perturbation to one digit affects the kinematics of the other, supporting a model of grasping in which the digits are coordinated by a higher-level process rather than being independently controlled. NEW & NOTEWORTHY A current debate concerning the neural control of prehension centers on the question of whether the digits in a pincer grasp are controlled individually or together. Employing a novel approach that perturbs mechanically the grasp component during a natural reach-to-grasp movement, this work is the first to test a key hypothesis: whether perturbing one of the digits during the movement affects the other. Our results support the idea that the digits are not independently controlled. PMID:28331008

Rab proteins: The key regulators of intracellular vesicle transport

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bhuin, Tanmay; Roy, Jagat Kumar, E-mail: jkroy@bhu.ac.in

2014-10-15

Vesicular/membrane trafficking essentially regulates the compartmentalization and abundance of proteins within the cells and contributes in many signalling pathways. This membrane transport in eukaryotic cells is a complex process regulated by a large and diverse array of proteins. A large group of monomeric small GTPases; the Rabs are essential components of this membrane trafficking route. Most of the Rabs are ubiquitously expressed proteins and have been implicated in vesicle formation, vesicle motility/delivery along cytoskeleton elements and docking/fusion at target membranes through the recruitment of effectors. Functional impairments of Rabs affecting transport pathways manifest different diseases. Rab functions are accompanied bymore » cyclical activation and inactivation of GTP-bound and GDP-bound forms between the cytosol and membranes which is regulated by upstream regulators. Rab proteins are characterized by their distinct sub-cellular localization and regulate a wide variety of endocytic, transcytic and exocytic transport pathways. Mutations of Rabs affect cell growth, motility and other biological processes. - Highlights: • Rab proteins regulate different signalling pathways. • Deregulation of Rabs is the fundamental causes of a variety of human diseases. • This paper gives potential directions in developing therapeutic targets. • This paper also gives ample directions for modulating pathways central to normal physiology. • These are the huge challenges for drug discovery and delivery in near future.« less

Assessment of the effects of multiple extreme floods on flow and transport processes under competing flood protection and environmental management strategies.

PubMed

Tu, Tongbi; Carr, Kara J; Ercan, Ali; Trinh, Toan; Kavvas, M Levent; Nosacka, John

2017-12-31

Extreme floods are regarded as one of the most catastrophic natural hazards and can result in significant morphological changes induced by pronounced sediment erosion and deposition processes over the landscape. However, the effects of extreme floods of different return intervals on the floodplain and river channel morphological evolution with the associated sediment transport processes are not well explored. Furthermore, different basin management action plans, such as engineering structure modifications, may also greatly affect the flood inundation, sediment transport, solute transport and morphological processes within extreme flood events. In this study, a coupled two-dimensional hydrodynamic, sediment transport and morphological model is applied to evaluate the impact of different river and basin management strategies on the flood inundation, sediment transport dynamics and morphological changes within extreme flood events of different magnitudes. The 10-year, 50-year, 100-year and 200-year floods are evaluated for the Lower Cache Creek system in California under existing condition and a potential future modification scenario. Modeling results showed that select locations of flood inundation within the study area tend to experience larger inundation depth and more sediment is likely to be trapped in the study area under potential modification scenario. The proposed two dimensional flow and sediment transport modeling approach implemented with a variety of inflow conditions can provide guidance to decision-makers when considering implementation of potential modification plans, especially as they relate to competing management strategies of large water bodies, such as the modeling area in this study. Copyright © 2017 Elsevier B.V. All rights reserved.

Regulation of the Dopamine and Vesicular Monoamine Transporters: Pharmacological Targets and Implications for Disease.

PubMed

German, Christopher L; Baladi, Michelle G; McFadden, Lisa M; Hanson, Glen R; Fleckenstein, Annette E

2015-10-01

Dopamine (DA) plays a well recognized role in a variety of physiologic functions such as movement, cognition, mood, and reward. Consequently, many human disorders are due, in part, to dysfunctional dopaminergic systems, including Parkinson's disease, attention deficit hyperactivity disorder, and substance abuse. Drugs that modify the DA system are clinically effective in treating symptoms of these diseases or are involved in their manifestation, implicating DA in their etiology. DA signaling and distribution are primarily modulated by the DA transporter (DAT) and by vesicular monoamine transporter (VMAT)-2, which transport DA into presynaptic terminals and synaptic vesicles, respectively. These transporters are regulated by complex processes such as phosphorylation, protein-protein interactions, and changes in intracellular localization. This review provides an overview of 1) the current understanding of DAT and VMAT2 neurobiology, including discussion of studies ranging from those conducted in vitro to those involving human subjects; 2) the role of these transporters in disease and how these transporters are affected by disease; and 3) and how selected drugs alter the function and expression of these transporters. Understanding the regulatory processes and the pathologic consequences of DAT and VMAT2 dysfunction underlies the evolution of therapeutic development for the treatment of DA-related disorders. Copyright © 2015 by The American Society for Pharmacology and Experimental Therapeutics.

Regulation of the Dopamine and Vesicular Monoamine Transporters: Pharmacological Targets and Implications for Disease

PubMed Central

German, Christopher L.; Baladi, Michelle G.; McFadden, Lisa M.; Hanson, Glen R.

2015-01-01

Dopamine (DA) plays a well recognized role in a variety of physiologic functions such as movement, cognition, mood, and reward. Consequently, many human disorders are due, in part, to dysfunctional dopaminergic systems, including Parkinson’s disease, attention deficit hyperactivity disorder, and substance abuse. Drugs that modify the DA system are clinically effective in treating symptoms of these diseases or are involved in their manifestation, implicating DA in their etiology. DA signaling and distribution are primarily modulated by the DA transporter (DAT) and by vesicular monoamine transporter (VMAT)-2, which transport DA into presynaptic terminals and synaptic vesicles, respectively. These transporters are regulated by complex processes such as phosphorylation, protein–protein interactions, and changes in intracellular localization. This review provides an overview of 1) the current understanding of DAT and VMAT2 neurobiology, including discussion of studies ranging from those conducted in vitro to those involving human subjects; 2) the role of these transporters in disease and how these transporters are affected by disease; and 3) and how selected drugs alter the function and expression of these transporters. Understanding the regulatory processes and the pathologic consequences of DAT and VMAT2 dysfunction underlies the evolution of therapeutic development for the treatment of DA-related disorders. PMID:26408528

Factors related to the implementation and diffusion of new technologies: a pilot study

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1979-06-01

In order to develop an understanding of how government intervention affects the processes of implementation and diffusion of new technologies, case studies of 14 technologies were carried out: automobiles; broadcast radio; frozen foods; black and white TV; color TV; polio vaccine; supersonic transport; fluoridation of water supplies; computer-aided instruction; basic oxygen process for steel; numerical control in manufacturing; digital computers; lasers; and integrated circuit. The key factors, their motivations for implementing/adopting the technology (or not doing so), the interactions among the key factors, and how these affected implementation/adoption are examined.

The radiative response of the lower troposphere to moisture intrusions into the Arctic

NASA Astrophysics Data System (ADS)

Johansson, Erik; Devasthale, Abhay; Tjernström, Michael; Ekman, Annica M. L.; L'Ecuyer, Tristan

2016-04-01

Water vapour (WV) transport into the Arctic occurs on daily to seasonal time scales and affects the Arctic atmosphere and surface energy balance in a number of ways. Extreme transport events, hereafter referred to as WV intrusions (WVI), account for a significant fraction of the total transport of water vapour into the Arctic. Considering their overall impact on the total moisture transport, WVIs are expected to strongly influence the radiative properties of the lower troposphere. Being a potent greenhouse gas, WV has a warming effect on the surface via its longwave forcing. As a result, WVIs have potential to warm the sea-ice surface and depending on their strength and degree of persistence, precondition accelerated melting of sea ice in subsequent months following the intrusion WVIs also affect the prevalent thermodynamical characteristics of the lowermost troposphere such as the presence of temperature and humidity inversions. They can further modulate cloud formation processes by changing the local thermodynamics. Characterizing the response of the lower troposphere to WVIs is therefore important, mainly to improve our understanding of the processes, affecting, air-sea-ice interactions. In this context, the aim of the present study is to provide observationally based insights into how the lower troposphere radiatively responds to WVIs, defined as events that exceed 90-percentile value of the poleward meridional moisture flux across 70° N. Using the combined lidar and radar (CloudSat+CALIPSO) data from the A-Train constellation of satellites from 2006 through 2010 together with data from AMSR-E, AIRS and MODIS, we examine the dominant circulation patterns that favour WVI and the surface response to WVI. We further quantify changes in cloudiness and cloud radiative effects during WVI.

The translocator protein gene is associated with symptom severity and cerebral pain processing in fibromyalgia.

PubMed

Kosek, Eva; Martinsen, Sofia; Gerdle, Björn; Mannerkorpi, Kaisa; Löfgren, Monika; Bileviciute-Ljungar, Indre; Fransson, Peter; Schalling, Martin; Ingvar, Martin; Ernberg, Malin; Jensen, Karin B

2016-11-01

The translocator protein (TSPO) is upregulated during glia activation in chronic pain patients. TSPO constitutes the rate-limiting step in neurosteroid synthesis, thus modulating synaptic transmission. Related serotonergic mechanisms influence if pro- or anti-nociceptive neurosteroids are produced. This study investigated the effects of a functional genetic polymorphism regulating the binding affinity to the TSPO, thus affecting symptom severity and cerebral pain processing in fibromyalgia patients. Gene-to-gene interactions with a functional polymorphism of the serotonin transporter gene were assessed. Fibromyalgia patients (n=126) were genotyped regarding the polymorphisms of the TSPO (rs6971) and the serotonin transporter (5-HTTLPR/rs25531). Functional magnetic resonance imaging (n=24) was used to study brain activation during individually calibrated pressure pain. Compared to mixed/low TSPO affinity binders, the high TSPO affinity binders rated more severe pain (p=0.016) and fibromyalgia symptoms (p=0.02). A significant interaction was found between the TSPO and the serotonin transporter polymorphisms regarding pain severity (p<0.0001). Functional connectivity analyses revealed that the TSPO high affinity binding group had more pronounced pain-evoked functional connectivity in the right frontoparietal network, between the dorsolateral prefrontal area and the parietal cortex. In conclusion, fibromyalgia patients with the TSPO high affinity binding genotype reported a higher pain intensity and more severe fibromyalgia symptoms compared to mixed/low affinity binders, and this was modulated by interaction with the serotonin transporter gene. To our knowledge this is the first evidence of functional genetic polymorphisms affecting pain severity in FM and our findings are in line with proposed glia-related mechanisms. Furthermore, the functional magnetic resonance findings indicated an effect of translocator protein on the affective-motivational components of pain perception. Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Vegetation in drylands: Effects on wind flow and aeolian sediment transport

USDA-ARS?s Scientific Manuscript database

Drylands are characterised by patchy vegetation, erodible surfaces and erosive aeolian processes. Empirical and modelling studies have shown that vegetation elements provide drag on the overlying airflow, thus affecting wind velocity profiles and altering erosive dynamics on desert surfaces. However...

Does ecohydrological connectivity affect sensitivity to environmental change?

EPA Science Inventory

Our goal is to understand the influences of complex terrain on the sensitivity of carbon and water cycle processes to environmental drivers at different scales. Gravity-driven flowpaths of air and water transport material and energy across and through landscapes, creating connec...

10 CFR 71.121 - Internal inspection.

Code of Federal Regulations, 2013 CFR

2013-01-01

... performed for each work operation where necessary to assure quality. If direct inspection of processed... REGULATORY COMMISSION (CONTINUED) PACKAGING AND TRANSPORTATION OF RADIOACTIVE MATERIAL Quality Assurance § 71... execute a program for inspection of activities affecting quality by or for the organization performing the...

10 CFR 71.121 - Internal inspection.

Code of Federal Regulations, 2012 CFR

2012-01-01

... performed for each work operation where necessary to assure quality. If direct inspection of processed... REGULATORY COMMISSION (CONTINUED) PACKAGING AND TRANSPORTATION OF RADIOACTIVE MATERIAL Quality Assurance § 71... execute a program for inspection of activities affecting quality by or for the organization performing the...

10 CFR 71.121 - Internal inspection.

Code of Federal Regulations, 2011 CFR

2011-01-01

... performed for each work operation where necessary to assure quality. If direct inspection of processed... REGULATORY COMMISSION (CONTINUED) PACKAGING AND TRANSPORTATION OF RADIOACTIVE MATERIAL Quality Assurance § 71... execute a program for inspection of activities affecting quality by or for the organization performing the...

10 CFR 71.121 - Internal inspection.

Code of Federal Regulations, 2014 CFR

2014-01-01

... performed for each work operation where necessary to assure quality. If direct inspection of processed... REGULATORY COMMISSION (CONTINUED) PACKAGING AND TRANSPORTATION OF RADIOACTIVE MATERIAL Quality Assurance § 71... execute a program for inspection of activities affecting quality by or for the organization performing the...

10 CFR 71.121 - Internal inspection.

Code of Federal Regulations, 2010 CFR

2010-01-01

... performed for each work operation where necessary to assure quality. If direct inspection of processed... REGULATORY COMMISSION (CONTINUED) PACKAGING AND TRANSPORTATION OF RADIOACTIVE MATERIAL Quality Assurance § 71... execute a program for inspection of activities affecting quality by or for the organization performing the...

The solusphere-its inferences and study

USGS Publications Warehouse

Rainwater, F.H.; White, W.F.

1958-01-01

Water is a fundamental geologic agent active in rock decomposition, erosion, and synthesis. Solutes in water are of particular interest to geochemists as sources of raw material for synthesis or as products of decomposition. When geochemical studies move from the laboratory into natural environment many variables relating to solute hydrology must be considered. As a focal point there has been designed a graphical representation of solute hydrology, the solusphere, which embodies the concepts of land-water occurrence and movement on which are superimposed geologic, biologic, physical, chemical, and cultural processes affecting solutes. The solusphere is demonstrated by passing an imaginary plane through the centre of the earth. This plane intercepts concentric zones designated as rock flowage, saturation, aeration, surface activity, and atmosphere. Transport processes carry solutes within and between zones without alteration or conversion. However, whether stationary or in motion, the water's solute character is constantly subject to (1) alteration processes that change concentration by addition or subtraction of solutes or solvent without loss of solute identities, and (2) conversion processes that change the chemical state and form of solutes. The geochemist is concerned with specific conversion processes, but he also must consider transport, alteration, and other conversion processes that are continually modifying the materials with which he is dealing in nature. The solusphere is an attempt to organize processes affecting the chemical quality of land waters into a unified field of science much like the field of marine chemistry. ?? 1958.

A simulation-based approach for estimating premining water quality: Red Mountain Creek, Colorado

USGS Publications Warehouse

Runkel, Robert L.; Kimball, Briant A; Walton-Day, Katherine; Verplanck, Philip L.

2007-01-01

Regulatory agencies are often charged with the task of setting site-specific numeric water quality standards for impaired streams. This task is particularly difficult for streams draining highly mineralized watersheds with past mining activity. Baseline water quality data obtained prior to mining are often non-existent and application of generic water quality standards developed for unmineralized watersheds is suspect given the geology of most watersheds affected by mining. Various approaches have been used to estimate premining conditions, but none of the existing approaches rigorously consider the physical and geochemical processes that ultimately determine instream water quality. An approach based on simulation modeling is therefore proposed herein. The approach utilizes synoptic data that provide spatially-detailed profiles of concentration, streamflow, and constituent load along the study reach. This field data set is used to calibrate a reactive stream transport model that considers the suite of physical and geochemical processes that affect constituent concentrations during instream transport. A key input to the model is the quality and quantity of waters entering the study reach. This input is based on chemical analyses available from synoptic sampling and observed increases in streamflow along the study reach. Given the calibrated model, additional simulations are conducted to estimate premining conditions. In these simulations, the chemistry of mining-affected sources is replaced with the chemistry of waters that are thought to be unaffected by mining (proximal, premining analogues). The resultant simulations provide estimates of premining water quality that reflect both the reduced loads that were present prior to mining and the processes that affect these loads as they are transported downstream. This simulation-based approach is demonstrated using data from Red Mountain Creek, Colorado, a small stream draining a heavily-mined watershed. Model application to the premining problem for Red Mountain Creek is based on limited field reconnaissance and chemical analyses; additional field work and analyses may be needed to develop definitive, quantitative estimates of premining water quality.

Conditions of transfer and quality of food.

PubMed

Southern, K J; Rasekh, J G; Hemphill, F E; Thaler, A M

2006-08-01

Many factors contribute to the production of safe foods of animal origin. Initiatives for an integrated approach to food safety recognise the importance of optimising transportation conditions to ensure on-farm interventions are preserved. Physical, microbial, and environmental hazards during the transportation process may adversely affect the safety and quality of meat, poultry, and egg products. Additionally, the stress level in animals can be raised by transportation conditions, potentially causing increased pathogen shedding in carrier animals which exposes other animals to possible contamination. The physiological effects of stress on animals can reduce the quality of meat, poultry, and egg products produced by the animals, thus decreasing the economic value of the animal. Increased globalisation of markets provides an incentive for transportation standards of food animals within a country as well as transportation standards between countries.

Characterizing the annual cycle of African dust transport to the Caribbean Basin and South America and its impact on the environment and air quality

NASA Astrophysics Data System (ADS)

Prospero, Joseph M.; Collard, François-Xavier; Molinié, Jack; Jeannot, Alexis

2014-07-01

Decades of aerosol measurements on Barbados have yielded a detailed picture of African mineral dust transport to the Caribbean Basin that shows a strong seasonal cycle with a maximum in boreal summer and a minimum in winter. Satellite aerosol products suggest that in spring, there is a comparable transport to northeastern South America. Here we characterize the complete annual cycle of dust transport to the western Atlantic by linking the Barbados record to multiyear records of airborne particulate matter less than 10 µm diameter (PM10) measured in air quality programs at Cayenne (French Guiana) and Guadeloupe. Comparisons of PM10 at these sites with concurrent dust measurements at Barbados demonstrate that high PM10 levels are almost entirely due to dust. Cayenne PM10 peaks in spring in a cycle which is consistent with satellite aerosol optical depth and suggests that the Sahel is the dominant source. The persistent transport of dust during much of the year could impact a wide range of environmental processes over a broad region that extends from the southern United States to the Amazon Basin. Finally, the average 24 h PM10 concentrations at Cayenne and Guadeloupe frequently exceed the World Health Organization air quality guideline. Thus soil dust PM10 could be a significant, but generally unrecognized, health factor at western Atlantic sites and also in other relatively remote regions affected by long-range dust from Africa. Because dust emissions and transport are highly sensitive to climate variability, climate change in coming decades could greatly affect a wide range of biogeochemical processes and human health in this region.

Influence of electromagnetic field on soliton-mediated charge transport in biological systems.

PubMed

Brizhik, Larissa

2015-01-01

It is shown that electromagnetic fields affect dynamics of Davydov's solitons which provide charge transport processes in macromolecules during metabolism of the system. There is a resonant frequency of the field at which it can cause the transition of electrons from bound soliton states into delocalised states. Such decay of solitons reduces the effectiveness of charge transport, and, therefore, inhibits redox processes. Solitons radiate their own electromagnetic field of characteristic frequency determined by their average velocity. This self-radiated field leads to synchronization of soliton dynamics and charge transport processes, and is the source of the coherence in the system. Exposition of the system to the oscillating electromagnetic field of the frequency, which coincides with the eigen-frequency of solitons can enhance eigen-radiation of solitons, and, therefore, will enhance synchronization of charge transpor, stimulate the redox processes and increase coherence in the system. Electromagnetic oscillating field causes also ratchet phenomenon of solitons, i.e., drift of solitons in macromolecules in the presence of unbiased periodic field. Such additional drift enhances the charge transport processes. It is shown that temperature facilitates the ratchet drift. In particular, temperature fluctuations lead to the lowering of the critical value of the intensity and period of the field, above which the drift of solitons takes place. Moreover, there is a stochastic resonance in the soliton dynamics in external electromagnetic fields. This means, that there is some optimal temperature at which the drift of solitons is maximal.

Gully annealing by fluvially-sourced Aeolian sand: remote sensing investigations of connectivity along the Fluvial-Aeolian-hillslope continuum on the Colorado River

USGS Publications Warehouse

Sankey, Joel B.; East, Amy E.; Collins, Brian D.; Caster, Joshua J.

2015-01-01

Processes contributing to development of ephemeral gully channels are of great importance to landscapes worldwide, and particularly in dryland regions where soil loss and land degradation from gully erosion pose long-term, land-management problems. Whereas gully formation has been relatively well studied, much less is known of the processes that anneal gullies and impede their growth. This work investigates gully annealing by aeolian sediment, along the Colorado River downstream of Glen Canyon Dam in Glen, Marble, and Grand Canyons, Arizona, USA (Figure 1). In this segment of the Colorado River, gully erosion potentially affects the stability and preservation of archaeological sites that are located within valley margins. Gully erosion occurs as a function of ephemeral, rainfall-induced overland flow associated with intense episodes of seasonal precipitation. Measurements of sediment transport and topographic change have demonstrated that fluvial sand in some locations is transported inland and upslope by aeolian processes to areas affected by gully erosion, and aeolian sediment activity can be locally effective at counteracting gully erosion (Draut, 2012; Collins and others, 2009, 2012; Sankey and Draut, 2014). The degree to which specific locations are affected by upslope wind redistribution of sand from active channel sandbars to higher elevation valley margins is termed “connectivity”. Connectivity is controlled spatially throughout the river by (1) the presence of upwind sources of fluvial sand within the contemporary active river channel (e.g., sandbars), and (2) bio-physical barriers that include vegetation and topography that might impede aeolian sediment transport. The primary hypothesis of this work is that high degrees of connectivity lead to less gullying potential.

Examining narrative transportation to anti-alcohol narratives

PubMed Central

Banerjee, Smita C.; Greene, Kathryn

2016-01-01

This study examined the transportation effects of alcohol consequence narratives varying in source (written by the narrative protagonist vs. protagonist's partner) and type of heath consequence (physical or emotional). Additionally, this study examined the role of narrative transportation and cognitive and discrete affective responses in the persuasion process. In this study, 501 students of a large northern university in the United Kingdom participated and were randomly assigned to one of the four conditions of narratives about alcohol use. Transportation was operationalized as general and self-reflective transportation. Results demonstrated that for narratives written by protagonist, the emotional effect narrative resulted in greater general transportation than the physical effect narrative. However, for narratives written by the protagonist's partner, the physical effect narrative resulted in greater general transportation than the emotional effect narrative. These findings were not substantiated for self-reflective transportation. Finally, results suggest that transportation experienced by anti-alcohol narratives can influence both favourable cognitive response and guilt, which are significant mediators in alcohol-related expectancies. Important theoretical and empirical implications are discussed. PMID:28133436

A synthetic ion transporter that disrupts autophagy and induces apoptosis by perturbing cellular chloride concentrations

NASA Astrophysics Data System (ADS)

Busschaert, Nathalie; Park, Seong-Hyun; Baek, Kyung-Hwa; Choi, Yoon Pyo; Park, Jinhong; Howe, Ethan N. W.; Hiscock, Jennifer R.; Karagiannidis, Louise E.; Marques, Igor; Félix, Vítor; Namkung, Wan; Sessler, Jonathan L.; Gale, Philip A.; Shin, Injae

2017-07-01

Perturbations in cellular chloride concentrations can affect cellular pH and autophagy and lead to the onset of apoptosis. With this in mind, synthetic ion transporters have been used to disturb cellular ion homeostasis and thereby induce cell death; however, it is not clear whether synthetic ion transporters can also be used to disrupt autophagy. Here, we show that squaramide-based ion transporters enhance the transport of chloride anions in liposomal models and promote sodium chloride influx into the cytosol. Liposomal and cellular transport activity of the squaramides is shown to correlate with cell death activity, which is attributed to caspase-dependent apoptosis. One ion transporter was also shown to cause additional changes in lysosomal pH, which leads to impairment of lysosomal enzyme activity and disruption of autophagic processes. This disruption is independent of the initiation of apoptosis by the ion transporter. This study provides the first experimental evidence that synthetic ion transporters can disrupt both autophagy and induce apoptosis.

Effects of air transportation cause physiological and biochemical changes indicative of stress leading to regulation of chaperone expression levels and corticosterone concentration.

PubMed

Shim, SunBo; Lee, SeHyun; Kim, ChuelKyu; Kim, ByoungGuk; Jee, SeungWan; Lee, SuHae; Sin, JiSoon; Bae, ChangJoon; Woo, Jong-Min; Cho, JungSik; Lee, EonPil; Choi, HaeWook; Kim, HongSung; Lee, JaeHo; Jung, YoungJin; Cho, ByungWook; Chae, KabRyong; Hwang, DaeYoun

2009-01-01

Laboratory animals generally experience numerous unfamiliar environmental and psychological influences such as noises, temperatures, handling, shaking, and smells during the process of air transportation. To investigate whether stress induced by air transportation affects stress-related factors in animals, the levels of hormone and chaperone protein were measured in several tissues of F344 rats transported for 13 h and not transported. Herein, we conclude that the levels of corticosterone, HSP70, and GRP78 were significantly increased in the transported group compare to not transported group, but they were rapidly restored to the not transported group level after a recovery period of one week. However, the magnitude of induction and restoration levels of these factors varied depending on the tissue type. Thus, these results suggest that air transportation should be considered for the improvement of laboratory animal health and to reduce the incidence of laboratory animal stress.

Methane transport and emissions from soil as affected by water table and vascular plants.

PubMed

Bhullar, Gurbir S; Iravani, Majid; Edwards, Peter J; Olde Venterink, Harry

2013-09-08

The important greenhouse gas (GHG) methane is produced naturally in anaerobic wetland soils. By affecting the production, oxidation and transport of methane to the atmosphere, plants have a major influence upon the quantities emitted by wetlands. Different species and functional plant groups have been shown to affect these processes differently, but our knowledge about how these effects are influenced by abiotic factors such as water regime and temperature remains limited. Here we present a mesocosm experiment comparing eight plant species for their effects on internal transport and overall emissions of methane under contrasting hydrological conditions. To quantify how much methane was transported internally through plants (the chimney effect), we blocked diffusion from the soil surface with an agar seal. We found that graminoids caused higher methane emissions than forbs, although the emissions from mesocosms with different species were either lower than or comparable to those from control mesocosms with no plant (i.e. bare soil). Species with a relatively greater root volume and a larger biomass exhibited a larger chimney effect, though overall methane emissions were negatively related to plant biomass. Emissions were also reduced by lowering the water table. We conclude that plant species (and functional groups) vary in the degree to which they transport methane to the atmosphere. However, a plant with a high capacity to transport methane does not necessarily emit more methane, as it may also cause more rhizosphere oxidation of methane. A shift in plant species composition from graminoids to forbs and/or from low to high productive species may lead to reduction of methane emissions.

41 CFR 301-51.102 - How is my transportation reimbursement affected if I make an unauthorized cash purchase of common...

Code of Federal Regulations, 2010 CFR

2010-07-01

... reimbursement affected if I make an unauthorized cash purchase of common carrier transportation? 301-51.102... transportation reimbursement affected if I make an unauthorized cash purchase of common carrier transportation... cost of the transportation. In all other instances, your reimbursement will be limited to the cost of...

Phosphate uptake by a kidney cell line (LLC-PK1).

PubMed

Rabito, C A

1983-07-01

The uptake of inorganic phosphate was studied in an epithelial cell line of renal origin. Phosphate was accumulated through a mechanism with several features of a carrier-mediated process. The influx was accounted for by a saturable Na+-dependent and a nonsaturable Na+-independent process. Kinetic analysis at pH 6.6 and 7.4 suggests that the dibasic form of phosphate is the form transported by the saturable Na+-dependent system. The presence of Na+ in the incubation medium increased Vmax without affecting Km. Arsenate competitively inhibited the Na+-dependent phosphate transport with a Ki of 1.2 mM at 140 mM Na+ and pH 7.4. Other known inhibitors of phosphate reabsorption in the proximal tubule also inhibited phosphate transport by this cell line. Uptake studies from either side of the monolayers indicated that this transport system is preferentially located in the apical membrane of the cultured renal cells. These results show a close similarity between the Na+-dependent phosphate transport system in LLC-PK1 cells and the system present in the apical membrane of the proximal tubular cells.

Psychostimulants affect dopamine transmission through both dopamine transporter-dependent and independent mechanisms

PubMed Central

dela Peña, Ike; Gevorkiana, Ruzanna; Shi, Wei-Xing

2015-01-01

The precise mechanisms by which cocaine and amphetamine-like psychostimulants exert their reinforcing effects are not yet fully defined. It is widely believed, however, that these drugs produce their effects by enhancing dopamine neurotransmission in the brain, especially in limbic areas such as the nucleus accumbens, by inducing dopamine transporter-mediated reverse transport and/or blocking dopamine reuptake though the dopamine transporter. Here, we present the evidence that aside from dopamine transporter, non-dopamine transporter-mediated mechanisms also participate in psychostimulant-induced dopamine release and contribute to the behavioral effects of these drugs, such as locomotor activation and reward. Accordingly, psychostimulants could increase norepinephrine release in the prefrontal cortex, the latter then alters the firing pattern of dopamine neurons resulting in changes in action potential-dependent dopamine release. These alterations would further affect the temporal pattern of dopamine release in the nucleus accumbens, thereby modifying information processing in that area. Hence, a synaptic input to a nucleus accumbens neuron may be enhanced or inhibited by dopamine depending on its temporal relationship to dopamine release. Specific temporal patterns of dopamine release may also be required for certain forms of synaptic plasticity in the nucleus accumbens. Together, these effects induced by psychostimulants, mediated through a non-dopamine transporter-mediated mechanism involving norepinephrine and the prefrontal cortex, may also contribute importantly to the reinforcing properties of these drugs. PMID:26209364

Workshop on Dust on Mars

NASA Technical Reports Server (NTRS)

Lee, S. (Editor)

1985-01-01

A workshop was organized to stimulate and coordinate research on the properties of Martian dust, its distribution on the planet, and the processes affecting its yearly deposition, erosion, and transport. A great deal of research was carried out to understand local, regional, and global aspects of the Martian dust transport cycle, with the goal being definition of the currently active processes and their relation to those operating over the long term. To date, however, most individual research projects have centered around interpretation of single data sets (visual images, IRTM, radar, etc.), and these many efforts were not coordinated. Many of the details of short and long term dust-related processes, as inferred from the various single data sets, are still not agreed upon. It was the intent of this workshop to encourage the informal exchange of ideas among several researchers currently investigating various aspects of the problem and to investigate cooperative efforts to synthesize the individual approaches into a unified understanding of the present seasonal and yearly Martian sediment transport cycles.

Multi-scale interactions affecting transport, storage, and processing of solutes and sediments in stream corridors (Invited)

NASA Astrophysics Data System (ADS)

Harvey, J. W.; Packman, A. I.

2010-12-01

Surface water and groundwater flow interact with the channel geomorphology and sediments in ways that determine how material is transported, stored, and transformed in stream corridors. Solute and sediment transport affect important ecological processes such as carbon and nutrient dynamics and stream metabolism, processes that are fundamental to stream health and function. Many individual mechanisms of transport and storage of solute and sediment have been studied, including surface water exchange between the main channel and side pools, hyporheic flow through shallow and deep subsurface flow paths, and sediment transport during both baseflow and floods. A significant challenge arises from non-linear and scale-dependent transport resulting from natural, fractal fluvial topography and associated broad, multi-scale hydrologic interactions. Connections between processes and linkages across scales are not well understood, imposing significant limitations on system predictability. The whole-stream tracer experimental approach is popular because of the spatial averaging of heterogeneous processes; however the tracer results, implemented alone and analyzed using typical models, cannot usually predict transport beyond the very specific conditions of the experiment. Furthermore, the results of whole stream tracer experiments tend to be biased due to unavoidable limitations associated with sampling frequency, measurement sensitivity, and experiment duration. We recommend that whole-stream tracer additions be augmented with hydraulic and topographic measurements and also with additional tracer measurements made directly in storage zones. We present examples of measurements that encompass interactions across spatial and temporal scales and models that are transferable to a wide range of flow and geomorphic conditions. These results show how the competitive effects between the different forces driving hyporheic flow, operating at different spatial scales, creates a situation where hyporheic fluxes cannot be accurately estimated without considering multi-scale effects. Our modeling captures the dominance of small-scale features such as bedforms that drive the majority of hyporheic flow, but it also captures how hyporheic flow is substantially modified by relatively small changes in streamflow or groundwater flow. The additional field measurements add sensitivity and power to whole stream tracer additions by improving resolution of the relative importance of storage at different scales (e.g. bar-scale versus bedform-scale). This information is critical in identifying hot spots where important biogeochemical reactions occur. In summary, interpreting multi-scale interactions in streams requires models that are physically based and that incorporate non-linear process dynamics. Such models can take advantage of increasingly comprehensive field data to integrate transport processes across spatially variable flow and geomorphic conditions. The most useful field and modeling approaches will be those that are simple enough to be easily implemented by users from various disciplines but comprehensive enough to produce meaningful predictions for a wide range of flow and geomorphic scenarios. This capability is needed to support improved strategies for protecting stream ecological health in the face of accelerating land use and climate change.

23 CFR 924.13 - Evaluation.

Code of Federal Regulations, 2011 CFR

2011-04-01

...) Ensure the accuracy and currency of the safety data; (ii) Identify factors that affect the priority of... HIGHWAY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION HIGHWAY SAFETY HIGHWAY SAFETY IMPROVEMENT PROGRAM... reaching the performance goals identified in § 924.9(a)(3)(ii)(G). (2) Include a process to evaluate the...

Radial transport processes as a precursor to particle deposition in drinking water distribution systems.

PubMed

van Thienen, P; Vreeburg, J H G; Blokker, E J M

2011-02-01

Various particle transport mechanisms play a role in the build-up of discoloration potential in drinking water distribution networks. In order to enhance our understanding of and ability to predict this build-up, it is essential to recognize and understand their role. Gravitational settling with drag has primarily been considered in this context. However, since flow in water distribution pipes is nearly always in the turbulent regime, turbulent processes should be considered also. In addition to these, single particle effects and forces may affect radial particle transport. In this work, we present an application of a previously published turbulent particle deposition theory to conditions relevant for drinking water distribution systems. We predict quantitatively under which conditions turbophoresis, including the virtual mass effect, the Saffman lift force, and the Magnus force may contribute significantly to sediment transport in radial direction and compare these results to experimental observations. The contribution of turbophoresis is mostly limited to large particles (>50 μm) in transport mains, and not expected to play a major role in distribution mains. The Saffman lift force may enhance this process to some degree. The Magnus force is not expected to play any significant role in drinking water distribution systems. © 2010 Elsevier Ltd. All rights reserved.

Assessment of applications of transport models on regional scale solute transport

NASA Astrophysics Data System (ADS)

Guo, Z.; Fogg, G. E.; Henri, C.; Pauloo, R.

2017-12-01

Regional scale transport models are needed to support the long-term evaluation of groundwater quality and to develop management strategies aiming to prevent serious groundwater degradation. The purpose of this study is to evaluate the capacity of previously-developed upscaling approaches to accurately describe main solute transport processes including the capture of late-time tails under changing boundary conditions. Advective-dispersive contaminant transport in a 3D heterogeneous domain was simulated and used as a reference solution. Equivalent transport under homogeneous flow conditions were then evaluated applying the Multi-Rate Mass Transfer (MRMT) model. The random walk particle tracking method was used for both heterogeneous and homogeneous-MRMT scenarios under steady state and transient conditions. The results indicate that the MRMT model can capture the tails satisfactorily for plume transported with ambient steady-state flow field. However, when boundary conditions change, the mass transfer model calibrated for transport under steady-state conditions cannot accurately reproduce the tailing effect observed for the heterogeneous scenario. The deteriorating impact of transient boundary conditions on the upscaled model is more significant for regions where flow fields are dramatically affected, highlighting the poor applicability of the MRMT approach for complex field settings. Accurately simulating mass in both mobile and immobile zones is critical to represent the transport process under transient flow conditions and will be the future focus of our study.

A Review of the Urban Development and Transport Impacts on Public Health with Particular Reference to Australia: Trans-Disciplinary Research Teams and Some Research Gaps

PubMed Central

Black, Deborah; Black, John

2009-01-01

Urbanization and transport have a direct effect on public health. A transdisciplinary approach is proposed and illustrated to tackle the general problem of these environmental stressors and public health. Processes driving urban development and environmental stressors are identified. Urbanization, transport and public health literature is reviewed and environmental stressors are classified into their impacts and which group is affected, the geographical scale and potential inventions. Climate change and health impacts are identified as a research theme. From an Australian perspective, further areas for research are identified. PMID:19543407

Sedimentary Processes on Earth, Mars, Titan, and Venus

NASA Astrophysics Data System (ADS)

Grotzinger, J. P.; Hayes, A. G.; Lamb, M. P.; McLennan, S. M.

The production, transport and deposition of sediment occur to varying degrees on Earth, Mars, Venus, and Titan. These sedimentary processes are significantly influenced by climate that affects production of sediment in source regions (weathering), and the mode by which that sediment is transported (wind vs. water). Other, more geological, factors determine where sediments are deposited (topography and tectonics). Fluvial and marine processes dominate Earth both today and in its geologic past, aeolian processes dominate modern Mars although in its past fluvial processes also were important, Venus knows only aeolian processes, and Titan shows evidence of both fluvial and aeolian processes. Earth and Mars also feature vast deposits of sedimentary rocks, spanning billions of years of planetary history. These ancient rocks preserve the long-term record of the evolution of surface environments, including variations in climate state. On Mars, sedimentary rocks record the transition from wetter, neutral-pH weathering, to brine-dominated low-pH weathering, to its dry current state.

Solute transport with equilibrium aqueous complexation and either sorption or ion exchange: Simulation methodology and applications

USGS Publications Warehouse

Lewis, F.M.; Voss, C.I.; Rubin, J.

1987-01-01

Methodologies that account for specific types of chemical reactions in the simulation of solute transport can be developed so they are compatible with solution algorithms employed in existing transport codes. This enables the simulation of reactive transport in complex multidimensional flow regimes, and provides a means for existing codes to account for some of the fundamental chemical processes that occur among transported solutes. Two equilibrium-controlled reaction systems demonstrate a methodology for accommodating chemical interaction into models of solute transport. One system involves the sorption of a given chemical species, as well as two aqueous complexations in which the sorbing species is a participant. The other reaction set involves binary ion exchange coupled with aqueous complexation involving one of the exchanging species. The methodology accommodates these reaction systems through the addition of nonlinear terms to the transport equations for the sorbing species. Example simulation results show (1) the effect equilibrium chemical parameters have on the spatial distributions of concentration for complexing solutes; (2) that an interrelationship exists between mechanical dispersion and the various reaction processes; (3) that dispersive parameters of the porous media cannot be determined from reactive concentration distributions unless the reaction is accounted for or the influence of the reaction is negligible; (4) how the concentration of a chemical species may be significantly affected by its participation in an aqueous complex with a second species which also sorbs; and (5) that these coupled chemical processes influencing reactive transport can be demonstrated in two-dimensional flow regimes. ?? 1987.

Axonal Transport and Neurodegeneration: How Marine Drugs Can Be Used for the Development of Therapeutics

PubMed Central

White, Joseph A.; Banerjee, Rupkatha; Gunawardena, Shermali

2016-01-01

Unlike virtually any other cells in the human body, neurons are tasked with the unique problem of transporting important factors from sites of synthesis at the cell bodies, across enormous distances, along narrow-caliber projections, to distally located nerve terminals in order to maintain cell viability. As a result, axonal transport is a highly regulated process whereby necessary cargoes of all types are packaged and shipped from one end of the neuron to the other. Interruptions in this finely tuned transport have been linked to many neurodegenerative disorders including Alzheimer’s (AD), Huntington’s disease (HD), and amyotrophic lateral sclerosis (ALS) suggesting that this pathway is likely perturbed early in disease progression. Therefore, developing therapeutics targeted at modifying transport defects could potentially avert disease progression. In this review, we examine a variety of potential compounds identified from marine aquatic species that affect the axonal transport pathway. These compounds have been shown to function in microtubule (MT) assembly and maintenance, motor protein control, and in the regulation of protein degradation pathways, such as the autophagy-lysosome processes, which are defective in many degenerative diseases. Therefore, marine compounds have great potential in developing effective treatment strategies aimed at early defects which, over time, will restore transport and prevent cell death. PMID:27213408

Effect of long-distance transportation on serum metabolic profiles of steer calves.

PubMed

Takemoto, Satoshi; Tomonaga, Shozo; Funaba, Masayuki; Matsui, Tohru

2017-12-01

Long-distance transportation is sometimes inevitable in the beef industry because of the geographic separation of major breeding and fattening areas. Long-distance transportation negatively impacts production and health of cattle, which may, at least partly, result from the disturbance of metabolism during and after transportation. However, alteration of metabolism remains elusive in transported cattle. We investigated the effects of transportation on the metabolomic profiles of Holstein steer calves. Non-targeted analysis of serum concentrations of low molecular weight metabolites was performed by gas chromatography mass spectrometry. Transportation affected 38 metabolites in the serum. A pathway analysis suggested that 26, 10, and 10 pathways were affected immediately after transportation, and 3 and 7 days after transportation, respectively. Some pathways were disturbed only immediately after transportation, likely because of feed and water withdrawal during transit. Nicotinate and nicotinamide metabolism, and citric acid cycle were affected for 3 days after transportation, whereas propionate metabolism, phenylalanine and tyrosine metabolism were affected throughout the experiment. Four pathways were not affected immediately after transportation, but were altered thereafter. These results suggested that many metabolic pathways had marked perturbations during transportation. Metabolites such as citric acid, propionate, tyrosine and niacin can be candidate supplements for mitigating transportation-induced adverse effects. © 2017 Japanese Society of Animal Science.

Spectroscopic analyses of soil samples outside Nile Delta of Egypt

NASA Astrophysics Data System (ADS)

Fakhry, Ahmed; Osman, Osama; Ezzat, Hend; Ibrahim, Medhat

2016-11-01

Soil in Egypt, especially around Delta is exposed to various pollutants which are affecting adversely soil fertility and stability. Humic Acids (HA) as a main part of soil organic matter (SOM) represent the heart of the interaction process of inorganic pollutants with soil. Consequently, Fourier transform infrared spectroscopy (FTIR) and Nuclear magnetic resonances (NMR) were used to characterize soil, sediment and extracted HA. Resulting data confirmed that the HA was responsible for transporting inorganic pollutants from surface to subsurface reaching the ground water, which may represent a high risk on public health. The transport process is coming as carboxyl in surface soil changed into metal carboxylate then transferred into the carboxyl in bottom soil.

Chapter 19. Cumulative watershed effects and watershed analysis

Treesearch

Leslie M. Reid

1998-01-01

Cumulative watershed effects are environmental changes that are affected by more than.one land-use activity and that are influenced by.processes involving the generation or transport.of water. Almost all environmental changes are.cumulative effects, and almost all land-use.activities contribute to cumulative effects

The requirement of iron transport for lymphocyte function.

PubMed

Lo, Bernice

2016-01-01

Iron is essential in multiple cellular processes and is especially critical for cellular respiration and division. A new study identified a mutation affecting the iron import receptor TfR1 as the cause of a human primary immunodeficiency, illuminating the importance of iron in immune cell function.

Factors Affecting Nuclear Export of the 60S Ribosomal Subunit In Vivo

PubMed Central

Stage-Zimmermann, Tracy; Schmidt, Ute; Silver, Pamela A.

2000-01-01

In Saccharomyces cerevisiae, the 60S ribosomal subunit assembles in the nucleolus and then is exported to the cytoplasm, where it joins the 40S subunit for translation. Export of the 60S subunit from the nucleus is known to be an energy-dependent and factor-mediated process, but very little is known about the specifics of its transport. To begin to address this problem, an assay was developed to follow the localization of the 60S ribosomal subunit in S. cerevisiae. Ribosomal protein L11b (Rpl11b), one of the ∼45 ribosomal proteins of the 60S subunit, was tagged at its carboxyl terminus with the green fluorescent protein (GFP) to enable visualization of the 60S subunit in living cells. A panel of mutant yeast strains was screened for their accumulation of Rpl11b–GFP in the nucleus as an indicator of their involvement in ribosome synthesis and/or transport. This panel included conditional alleles of several rRNA-processing factors, nucleoporins, general transport factors, and karyopherins. As predicted, conditional alleles of rRNA-processing factors that affect 60S ribosomal subunit assembly accumulated Rpl11b–GFP in the nucleus. In addition, several of the nucleoporin mutants as well as a few of the karyopherin and transport factor mutants also mislocalized Rpl11b–GFP. In particular, deletion of the previously uncharacterized karyopherin KAP120 caused accumulation of Rpl11b–GFP in the nucleus, whereas ribosomal protein import was not impaired. Together, these data further define the requirements for ribosomal subunit export and suggest a biological function for KAP120. PMID:11071906

Current and new developments in transport and regulatory issues concerning radioisotopes: managing change for minimum business impact

NASA Astrophysics Data System (ADS)

Bennett, Neil; Coppell, David; Rogers, David; Schrader, John

2004-09-01

Changes in the regulatory framework governing the Radiation Processing Industry have the potential to make a real business impact on day-to-day profitability. Many areas of the Radiation Processing Industry are affected by changes in the regulatory framework within which these areas are managed. When planning for such changes the transportation element in the shipment of sealed cobalt radiation sources is an area that is often neglected by some parts of the distribution chain. A balance must be struck between the cobalt supplier and the facility operator/customer that rests upon how much the customer needs to know about the intricacies of cobalt shipment. The objective of this paper is to highlight areas of possible business impact and reassure the users of sealed radiation sources that the global suppliers of these products are used to negotiating local variations in regulations governing the physical transportation of radiation sources, changes in regulations governing the design, manufacture and use of transportation containers and changes in the availability of commercial shippers and shipping routes. The major suppliers of industrial quantities of cobalt-60 are well placed to lead their customers through this complex process as a matter of routine.

A solution-processed binary cathode interfacial layer facilitates electron extraction for inverted polymer solar cells.

PubMed

Zhang, Xinyuan; Li, Zhiqi; Liu, Chunyu; Guo, Jiaxin; Shen, Liang; Guo, Wenbin

2018-03-15

The charge transfer and separation are significantly affected by the electron properties of the interface between the electron-donor layer and the carrier-transporting layer in polymer solar cells (PSCs). In this study, we investigate the electron extraction mechanism of PSCs with a low temperature solution-processed ZnO/PEI as electron transport layer. The incorporation of PEI layer can decrease the work function of ZnO and reduce interfacial barrier, which facilitates electron extraction and suppresses bimolecular recombination, leading to a significant performance enhancement. Furthermore, PEI layer can induce phase separation and passivite inorganic surface trap states as well as shift the interfacial energy offset between metal oxide and organic materials. This work offers a simple and effective way to improve the charge transporting property of organic photovoltaic devices. Copyright © 2017 Elsevier Inc. All rights reserved.

Transportation Resilience Tools from the U.S. Department of Transportation

NASA Astrophysics Data System (ADS)

Snow, C.; Rodehorst, B.; Miller, R.; Choate, A.; Hyman, R.; Kafalenos, R.; Beucler, B.

2014-12-01

The U.S. Department of Transportation (U.S. DOT) and ICF International have been working to develop tools and resources to help state departments of transportation (DOTs) and metropolitan planning organizations (MPOs) prepare for the impacts of climate change. U.S. DOT recently released a set of climate change and extreme weather tools for state DOTs and MPOs that address key challenges they have faced in increasing their climate change resilience. The tools were developed under the U.S. DOT Gulf Coast Study, Phase 2. The CMIP Climate Data Processing Tool provides an easy way for users to gather and process downscaled climate model data at the local level, and "translates" that data into information relevant to transportation engineers and planners. The Vulnerability Assessment Scoring Tool (VAST), provides a step-by-step approach for users to assess their vulnerability to climate change in a transparent, cost-effective way. The Transportation Climate Change Sensitivity Matrix provides detailed information on how 11 different climate stressors may affect transportation infrastructure and operations. These tools significantly advance the state of the practice for transportation agencies to respond to climate change impacts, and beta-versions have been used successfully by several state DOTs and MPOs. This presentation will focus on these tools, examples of how they can be applied within transportation agencies, and opportunities to apply the lessons learned from the tools—or even the tools themselves—beyond the transportation sector, including as part of the national Climate Resilience Toolkit.

Characterizing multiple timescales of stream and storage zone interaction that affect solute fate and transport in streams

USGS Publications Warehouse

Choi, Jungyill; Harvey, Judson W.; Conklin, Martha H.

2000-01-01

The fate of contaminants in streams and rivers is affected by exchange and biogeochemical transformation in slowly moving or stagnant flow zones that interact with rapid flow in the main channel. In a typical stream, there are multiple types of slowly moving flow zones in which exchange and transformation occur, such as stagnant or recirculating surface water as well as subsurface hyporheic zones. However, most investigators use transport models with just a single storage zone in their modeling studies, which assumes that the effects of multiple storage zones can be lumped together. Our study addressed the following question: Can a single‐storage zone model reliably characterize the effects of physical retention and biogeochemical reactions in multiple storage zones? We extended an existing stream transport model with a single storage zone to include a second storage zone. With the extended model we generated 500 data sets representing transport of nonreactive and reactive solutes in stream systems that have two different types of storage zones with variable hydrologic conditions. The one storage zone model was tested by optimizing the lumped storage parameters to achieve a best fit for each of the generated data sets. Multiple storage processes were categorized as possessing I, additive; II, competitive; or III, dominant storage zone characteristics. The classification was based on the goodness of fit of generated data sets, the degree of similarity in mean retention time of the two storage zones, and the relative distributions of exchange flux and storage capacity between the two storage zones. For most cases (>90%) the one storage zone model described either the effect of the sum of multiple storage processes (category I) or the dominant storage process (category III). Failure of the one storage zone model occurred mainly for category II, that is, when one of the storage zones had a much longer mean retention time (ts ratio > 5.0) and when the dominance of storage capacity and exchange flux occurred in different storage zones. We also used the one storage zone model to estimate a “single” lumped rate constant representing the net removal of a solute by biogeochemical reactions in multiple storage zones. For most cases the lumped rate constant that was optimized by one storage zone modeling estimated the flux‐weighted rate constant for multiple storage zones. Our results explain how the relative hydrologic properties of multiple storage zones (retention time, storage capacity, exchange flux, and biogeochemical reaction rate constant) affect the reliability of lumped parameters determined by a one storage zone transport model. We conclude that stream transport models with a single storage compartment will in most cases reliably characterize the dominant physical processes of solute retention and biogeochemical reactions in streams with multiple storage zones.

Transcriptome Analysis of Al-Induced Genes in Buckwheat (Fagopyrum esculentum Moench) Root Apex: New Insight into Al Toxicity and Resistance Mechanisms in an Al Accumulating Species.

PubMed

Xu, Jia Meng; Fan, Wei; Jin, Jian Feng; Lou, He Qiang; Chen, Wei Wei; Yang, Jian Li; Zheng, Shao Jian

2017-01-01

Relying on Al-activated root oxalate secretion, and internal detoxification and accumulation of Al, buckwheat is highly Al resistant. However, the molecular mechanisms responsible for these processes are still poorly understood. It is well-known that root apex is the critical region of Al toxicity that rapidly impairs a series of events, thus, resulting in inhibition of root elongation. Here, we carried out transcriptome analysis of the buckwheat root apex (0-1 cm) with regards to early response (first 6 h) to Al stress (20 μM), which is crucial for identification of both genes and processes involved in Al toxicity and tolerance mechanisms. We obtained 34,469 unigenes with 26,664 unigenes annotated in the NCBI database, and identified 589 up-regulated and 255 down-regulated differentially expressed genes (DEGs) under Al stress. Functional category analysis revealed that biological processes differ between up- and down-regulated genes, although 'metabolic processes' were the most affected category in both up- and down-regulated DEGs. Based on the data, it is proposed that Al stress affects a variety of biological processes that collectively contributes to the inhibition of root elongation. We identified 30 transporter genes and 27 transcription factor (TF) genes induced by Al. Gene homology analysis highlighted candidate genes encoding transporters associated with Al uptake, transport, detoxification, and accumulation. We also found that TFs play critical role in transcriptional regulation of Al resistance genes in buckwheat. In addition, gene duplication events are very common in the buckwheat genome, suggesting a possible role for gene duplication in the species' high Al resistance. Taken together, the transcriptomic analysis of buckwheat root apex shed light on the processes that contribute to the inhibition of root elongation. Furthermore, the comprehensive analysis of both transporter genes and TF genes not only deep our understanding on the responses of buckwheat roots to Al toxicity but provide a good start for functional characterization of genes critical for Al tolerance.

Microscopic dynamics research on the "mature" process of dye-sensitized solar cells after injection of highly concentrated electrolyte.

PubMed

Liang, Zhongguan; Liu, Weiqing; Chen, Jun; Hu, Linhua; Dai, Songyuan

2015-01-21

After injection of electrolyte, the internal three-dimensional solid-liquid penetration system of dye-sensitized solar cells (DSCs) can take a period of time to reach "mature" state. This paper studies the changes of microscopic processes of DSCs including TiO2 energy-level movement, localized state distribution, charge accumulation, electron transport, and recombination dynamics, from the beginning of electrolyte injection to the time of reached mature state. The results show that the microscopic dynamics process of DSCs exhibited a time-dependent behavior and achieved maturity ∼12 h after injecting the electrolyte into DSCs. Within 0-12 h, several results were observed: (1) the conduction band edge of TiO2 moved slightly toward negative potential direction; (2) the localized states in the band gap of TiO2 was reduced according to the same distribution law; (3) the transport resistance in TiO2 film increased, and electron transport time was prolonged as the time of maturity went on, which indicated that the electron transport process is impeded gradually; (4) the recombination resistance at the TiO2/electrolyte (EL) interface increases, and electron lifetime gradually extends, therefore, the recombination process is continuously suppressed. Furthermore, results suggest that the parameters of EL/Pt-transparent conductive oxide (TCO) interface including the interfacial capacitance, electron-transfer resistance, and transfer time constant would change with time of maturity, indicating that the EL/Pt-TCO interface is a potential factor affecting the mature process of DSCs.

Methane transport and emissions from soil as affected by water table and vascular plants

PubMed Central

2013-01-01

Background The important greenhouse gas (GHG) methane is produced naturally in anaerobic wetland soils. By affecting the production, oxidation and transport of methane to the atmosphere, plants have a major influence upon the quantities emitted by wetlands. Different species and functional plant groups have been shown to affect these processes differently, but our knowledge about how these effects are influenced by abiotic factors such as water regime and temperature remains limited. Here we present a mesocosm experiment comparing eight plant species for their effects on internal transport and overall emissions of methane under contrasting hydrological conditions. To quantify how much methane was transported internally through plants (the chimney effect), we blocked diffusion from the soil surface with an agar seal. Results We found that graminoids caused higher methane emissions than forbs, although the emissions from mesocosms with different species were either lower than or comparable to those from control mesocosms with no plant (i.e. bare soil). Species with a relatively greater root volume and a larger biomass exhibited a larger chimney effect, though overall methane emissions were negatively related to plant biomass. Emissions were also reduced by lowering the water table. Conclusions We conclude that plant species (and functional groups) vary in the degree to which they transport methane to the atmosphere. However, a plant with a high capacity to transport methane does not necessarily emit more methane, as it may also cause more rhizosphere oxidation of methane. A shift in plant species composition from graminoids to forbs and/or from low to high productive species may lead to reduction of methane emissions. PMID:24010540

Can plant phloem properties affect the link between ecosystem assimilation and respiration?

NASA Astrophysics Data System (ADS)

Mencuccini, M.; Hölttä, T.; Sevanto, S.; Nikinmaa, E.

2012-04-01

Phloem transport of carbohydrates in plants under field conditions is currently not well understood. This is largely the result of the lack of techniques suitable for measuring phloem physiological properties continuously under field conditions. This lack of knowledge is currently hampering our efforts to link ecosystem-level processes of carbon fixation, allocation and use, especially belowground. On theoretical grounds, the properties of the transport pathway from canopy to roots must be important in affecting the link between carbon assimilation and respiration, but it is unclear whether their effect is partially or entirely masked by processes occurring in other parts of the ecosystem. One can also predict the characteristic time scales over which these effects should occur and, as consequence, predict whether the transfer of turgor and osmotic signals from the site of carbon assimilation to the sites of carbon use are likely to control respiration. We will present two sources of evidence suggesting that the properties of the phloem transport system may affect processes that are dependent on the supply of carbon substrate, such as root or soil respiration. Firstly, we will summarize the results of a literature survey on soil and ecosystem respiration where the speed of transfer of photosynthetic sugars from the plant canopy to the soil surface was determined. Estimates of the transfer speed could be grouped according to whether the study employed isotopic or canopy soil flux-based techniques. These two groups provided very different estimates of transfer times likely because transport of sucrose molecules, and pressure-concentration waves, in phloem differed. Secondly, we will argue that simultaneous measurements of bark and xylem diameters provide a novel tool to determine the continuous variations of phloem turgor in vivo in the field. We will present a model that interprets these changes in xylem and live bark diameters and present data testing the model predictions for mature trees in the field. At the diurnal scale, the calculated phloem turgor signal related to patterns of photosynthetic activity and inferred phloem loading. At the seasonal scale, phloem turgor showed rapid changes during two droughts and after two rainfall events consistent with physiological predictions of phloem transport. Daily cumulative totals of calculated phloem osmotic concentrations were strongly related to daily cumulative totals of canopy photosynthesis. We propose that this method has potential for continuous field monitoring of tree phloem function.

A novel approach for supercapacitors degradation characterization

NASA Astrophysics Data System (ADS)

Oz, Alon; Gelman, Danny; Goren, Emanuelle; Shomrat, Neta; Baltianski, Sioma; Tsur, Yoed

2017-07-01

A novel approach to analyze electrochemical impedance spectroscopy (EIS), based on evolutionary programming, has been utilized to characterize supercapacitors operation mechanism and degradation processes. This approach poses the ability of achieving a comprehensive study of supercapacitors via solely AC measurements. Commercial supercapacitors were examined during accelerated degradation. The microstructure of the electrode-electrolyte interface changes upon degradation; electrolyte parasitic reactions yield the formation of precipitates on the porous surface, which limit the access of the electrolyte ions to the active area and thus reduces performance. EIS analysis using Impedance Spectroscopy Genetic Programming (ISGP) technique enables identifying how the changing microstructure is affecting the operation mechanism of supercapacitors, in terms of each process effective capacitance and time constant. The most affected process is the transport of electrolyte ions at the porous electrode. Their access to the whole active area is hindered, which is shown in our analysis by the decrease of the capacitance gained in the transport and the longer time it takes to penetrate the entire pores depth. Early failure detection is also demonstrated, in a way not readily possible via conventional indicators. ISGP advanced analysis method has been verified using conventional and proven techniques: cyclic voltammetry and post mortem measurements.

Evaluation of Interrill Erosion Under Wind-Driven Rain Events in Northern Burkina Faso

USDA-ARS?s Scientific Manuscript database

Wind changes the velocity, frequency and angle of raindrop impact and hence affects rain splash detachment rates. Many soil erosion models underpredict interrill erosion because the contribution of the wind to raindrop detachment and wind-driven transport processes are not taken into account. In thi...

78 FR 59364 - Revision of Agency Information Collection Activity Under OMB Review: Transportation Worker...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-26

... identifying and other information by individuals applying for a TWIC and a customer satisfaction survey. DATES... Replacement or Extended Expiration Date Request, and TWIC Customer Satisfaction Survey. Affected Public... with the enrollment and activation process. This optional customer satisfaction survey is provided at...

Nutrient transport in runoff as affected by diet, tillage and manure application rate

USDA-ARS?s Scientific Manuscript database

Including distillers grains in feedlot finishing diets may increase feedlot profitability. However the nutrient content of by-products are concentrated about three during the distillation process. Manure can be applied to meet single or multiple year crop nutrient requirements. The water quality eff...

The serotonin transporter 5-HTTLPR polymorphism in the association between sleep quality and affect.

PubMed

Hartmann, Jessica A; Wichers, Marieke; van Bemmel, Alex L; Derom, Catherine; Thiery, Evert; Jacobs, Nele; van Os, Jim; Simons, Claudia J P

2014-07-01

A link between sleep and affect is well-known. Serotonin (5-HT) is associated with the regulation of affective as well as sleep-related processes. A functional polymorphism in the serotonin transporter gene (5-HTTLPR) has been associated with serotonergic functioning. The present study investigated whether allelic variation of this gene moderates the association between nighttime subjective sleep quality and affect the following day. A population-based sample of 361 ethnically homogenous adult female twins underwent a five day protocol based on the experience sampling method (ESM), assessing momentary negative affect, positive affect, and subjective sleep quality repeatedly and prospectively. There was a significant interaction between sleep quality and genotype in predicting positive affect the next day: carriers of one (n=167) or two S-alleles (n=78) had a significantly steeper slope compared to LL carriers (n=116) (χ(2)=4.16, p=.042 and χ(2)=3.90, p=.048 respectively). The association between subjective sleep quality and positive affect the next day varied as a function of 5-HTTLPR: it was stronger in carriers of at least one copy of the S-allele compared to homozygous L-carriers, supporting a link between sleep and affect regulation, in which serotonin may play a role. However, these results are preliminary and require replication. Copyright © 2014 Elsevier B.V. and ECNP. All rights reserved.

Distribution and transportation of mercury from glacier to lake in the Qiangyong Glacier Basin, southern Tibetan Plateau, China.

PubMed

Sun, Shiwei; Kang, Shichang; Huang, Jie; Li, Chengding; Guo, Junming; Zhang, Qianggong; Sun, Xuejun; Tripathee, Lekhendra

2016-06-01

The Tibetan Plateau is home to the largest aggregate of glaciers outside the Polar Regions and is a source of fresh water to 1.4 billion people. Yet little is known about the transportation and cycling of Hg in high-elevation glacier basins on Tibetan Plateau. In this study, surface snow, glacier melting stream water and lake water samples were collected from the Qiangyong Glacier Basin. The spatiotemporal distribution and transportation of Hg from glacier to lake were investigated. Significant diurnal variations of dissolved Hg (DHg) concentrations were observed in the river water, with low concentrations in the morning (8:00am-14:00pm) and high concentrations in the afternoon (16:00pm-20:00pm). The DHg concentrations were exponentially correlated with runoff, which indicated that runoff was the dominant factor affecting DHg concentrations in the river water. Moreover, significant decreases of Hg were observed during transportation from glacier to lake. DHg adsorption onto particulates followed by the sedimentation of particulate-bound Hg (PHg) could be possible as an important Hg removal mechanism during the transportation process. Significant decreases in Hg concentrations were observed downstream of Xiao Qiangyong Lake, which indicated that the high-elevation lake system could significantly affect the distribution and transportation of Hg in the Qiangyong Glacier Basin. Copyright © 2016. Published by Elsevier B.V.

Physiological roles of zinc transporters: molecular and genetic importance in zinc homeostasis.

PubMed

Hara, Takafumi; Takeda, Taka-Aki; Takagishi, Teruhisa; Fukue, Kazuhisa; Kambe, Taiho; Fukada, Toshiyuki

2017-03-01

Zinc (Zn) is an essential trace mineral that regulates the expression and activation of biological molecules such as transcription factors, enzymes, adapters, channels, and growth factors, along with their receptors. Zn deficiency or excessive Zn absorption disrupts Zn homeostasis and affects growth, morphogenesis, and immune response, as well as neurosensory and endocrine functions. Zn levels must be adjusted properly to maintain the cellular processes and biological responses necessary for life. Zn transporters regulate Zn levels by controlling Zn influx and efflux between extracellular and intracellular compartments, thus, modulating the Zn concentration and distribution. Although the physiological functions of the Zn transporters remain to be clarified, there is growing evidence that Zn transporters are related to human diseases, and that Zn transporter-mediated Zn ion acts as a signaling factor, called "Zinc signal". Here we describe critical roles of Zn transporters in the body and their contribution at the molecular, biochemical, and genetic levels, and review recently reported disease-related mutations in the Zn transporter genes.

Scanning vertical distributions of typical aerosols along the Yangtze River using elastic lidar.

PubMed

Fan, Shidong; Liu, Cheng; Xie, Zhouqing; Dong, Yunsheng; Hu, Qihou; Fan, Guangqiang; Chen, Zhengyi; Zhang, Tianshu; Duan, Jingbo; Zhang, Pengfei; Liu, Jianguo

2018-07-01

In recent years, China has experienced heavy air pollution, especially haze caused by particulate matter (PM). The compositions, horizontal distributions, transport, and chemical formation mechanisms of PM and its precursors have been widely investigated in China based on near-ground measurements. However, the understanding of the distributions and physical and chemical processes of PM in the vertical direction remains limited. In this study, an elastic lidar was employed to investigate the vertical profiles of aerosols along the Yangtze River during the Yangtze River Campaign of winter 2015. Some typical aerosols were identified and some events were analyzed in three cases. Dust aerosols can be transported from the Gobi Desert to the Yangtze River basin across a long distance at both low and high altitudes in early December. The transport route was perpendicular to the ship track, suggesting that the dust aerosols may have affected a large area. Moreover, during transport, some dust was also affected by the areas below its transport route since some anthropogenic pollutants were mixed with the dust and changed some of its optical properties. Biomass-burning aerosols covering a distant range along the Yangtze River were identified. This result directly shows the impact areas of biomass-burning aerosols in some agricultural fields. Some directly emitted aerosol plumes were observed, and direct effects of such plumes were limited both temporally and spatially. In addition, an aerosol plume with very low linear depolarization ratios, probably formed through secondary processes, was also observed. These results can help us better understand aerosols in large spatial scales in China and can be useful to regional haze studies. Copyright © 2018. Published by Elsevier B.V.

Coupling between geochemical reactions and multicomponent gas and solute transport in unsaturated media: A reactive transport modeling study

USGS Publications Warehouse

Molins, S.; Mayer, K.U.

2007-01-01

The two‐way coupling that exists between biogeochemical reactions and vadose zone transport processes, in particular gas phase transport, determines the composition of soil gas. To explore these feedback processes quantitatively, multicomponent gas diffusion and advection are implemented into an existing reactive transport model that includes a full suite of geochemical reactions. Multicomponent gas diffusion is described on the basis of the dusty gas model, which accounts for all relevant gas diffusion mechanisms. The simulation of gas attenuation in partially saturated landfill soil covers, methane production, and oxidation in aquifers contaminated by organic compounds (e.g., an oil spill site) and pyrite oxidation in mine tailings demonstrate that both diffusive and advective gas transport can be affected by geochemical reactions. Methane oxidation in landfill covers reduces the existing upward pressure gradient, thereby decreasing the contribution of advective methane emissions to the atmosphere and enhancing the net flux of atmospheric oxygen into the soil column. At an oil spill site, methane oxidation causes a reversal in the direction of gas advection, which results in advective transport toward the zone of oxidation both from the ground surface and the deeper zone of methane production. Both diffusion and advection contribute to supply atmospheric oxygen into the subsurface, and methane emissions to the atmosphere are averted. During pyrite oxidation in mine tailings, pressure reduction in the reaction zone drives advective gas flow into the sediment column, enhancing the oxidation process. In carbonate‐rich mine tailings, calcite dissolution releases carbon dioxide, which partly offsets the pressure reduction caused by O2 consumption.

Wind sorting affects differently the organo-mineral composition of saltating and particulate materials in contrasting texture agricultural soils

NASA Astrophysics Data System (ADS)

Iturri, Laura Antonela; Funk, Roger; Leue, Martin; Sommer, Michael; Buschiazzo, Daniel Eduardo

2017-10-01

There is little information about the mineral and organic composition of sediments eroded by wind at different heights. Because of that, wind tunnel simulations were performed on four agricultural loess soils of different granulometry and their saltating materials collected at different heights. The particulate matter with an aerodynamic diameter mainly smaller than 10 μm (PM10) of these soils was obtained separately by a laboratory method. Results indicated that the granulometric composition of sediments collected at different heights was more homogeneous in fine- than in sandy-textured soils, which were more affected by sorting effects during wind erosion. This agrees with the preferential transport of quartz at low heights and of clay minerals at greater heights. SOC contents increased with height, but the composition of the organic materials was different: stable carboxylic acids, aldehydes, amides and aromatics were preferentially transported close to the ground because their were found in larger aggregates, while plant debris and polysaccharides, carbohydrates and derivatives of microbial origin from organic matter dominated at greater heights for all soil types. The amount of SOC in the PM10 fraction was higher when it was emitted from sandy than from fine textured soils. Because of the sorting process produced by wind erosion, the stable organic matter compounds will be transported at low heights and local scales, modifying soil fertility due to nutrient exportation, while less stable organic compounds will be part of the suspension losses, which are known to affect some processes at regional- or global scale.

Mechanistic modeling of thermo-hydrological processes and microbial interactions at pore to profile scales resolve methane emission dynamics from permafrost soil

NASA Astrophysics Data System (ADS)

Ebrahimi, Ali; Or, Dani

2017-04-01

The sensitivity of the Earth's polar regions to raising global temperatures is reflected in rapidly changing hydrological processes with pronounced seasonal thawing of permafrost soil and increased biological activity. Of particular concern is the potential release of large amounts of soil carbon and the stimulation of other soil-borne GHG emissions such as methane. Soil methanotrophic and methanogenic microbial communities rapidly adjust their activity and spatial organization in response to permafrost thawing and a host of other environmental factors. Soil structural elements such as aggregates and layering and hydration status affect oxygen and nutrient diffusion processes thereby contributing to methanogenic activity within temporal anoxic niches (hotspots or hot-layers). We developed a mechanistic individual based model to quantify microbial activity dynamics within soil pore networks considering, hydration, temperature, transport processes and enzymatic activity associated with methane production in soil. The model was the upscaled from single aggregates (or hotspots) to quantifying emissions from soil profiles in which freezing/thawing processes provide macroscopic boundary conditions for microbial activity at different soil depths. The model distinguishes microbial activity in aerate bulk soil from aggregates (or submerged parts of the profile) for resolving methane production and oxidation rates. Methane transport pathways through soil by diffusion and ebullition of bubbles vary with hydration dynamics and affect emission patterns. The model links seasonal thermal and hydrologic dynamics with evolution of microbial community composition and function affecting net methane emissions in good agreement with experimental data. The mechanistic model enables systematic evaluation of key controlling factors in thawing permafrost and microbial response (e.g., nutrient availability, enzyme activity, PH) on long term methane emissions and carbon decomposition rates in the rapidly changing polar regions.

Striking the right chord: moving music increases psychological transportation and behavioral intentions.

PubMed

Strick, Madelijn; de Bruin, Hanka L; de Ruiter, Linde C; Jonkers, Wouter

2015-03-01

Three experiments among university students (N = 372) investigated the persuasive power of moving (i.e., intensely emotional and "chills"-evoking) music in audio-visual advertising. Although advertisers typically aim to increase elaborate processing of the message, these studies illustrate that the persuasive effect of moving music is based on increased narrative transportation ("getting lost" in the ad's story), which reduces critical processing. In Experiment 1, moving music increased transportation and some behavioral intentions (e.g., to donate money). Experiment 2 experimentally increased the salience of manipulative intent of the advertiser, and showed that moving music reduces inferences of manipulative intent, leading in turn to increased behavioral intentions. Experiment 3 tested boundary effects, and showed that moving music fails to increase behavioral intentions when the salience of manipulative intent is either extremely high (which precludes transportation) or extremely low (which precludes reduction of inferences of manipulative intent). Moving music did not increase memory performance, beliefs, and explicit attitudes, suggesting that the influence is affect-based rather cognition-based. Together, these studies illustrate that moving music reduces inferences of manipulation and increases behavioral intentions by transporting viewers into the story of the ad. PsycINFO Database Record (c) 2015 APA, all rights reserved.

Fluid mechanics in the perivascular space.

PubMed

Wang, Peng; Olbricht, William L

2011-04-07

Perivascular space (PVS) within the brain is an important pathway for interstitial fluid (ISF) and solute transport. Fluid flowing in the PVS can affect these transport processes and has significant impacts on physiology. In this paper, we carry out a theoretical analysis to investigate the fluid mechanics in the PVS. With certain assumptions and approximations, we are able to find an analytical solution to the problem. We discuss the physical meanings of the solution and particularly examine the consequences of the induced fluid flow in the context of convection-enhanced delivery (CED). We conclude that peristaltic motions of the blood vessel walls can facilitate fluid and solute transport in the PVS. Copyright © 2011 Elsevier Ltd. All rights reserved.

Assessing Impact of Aerosol Intercontinental Transport on Regional Air Quality and Climate: What Satellites Can Help

NASA Technical Reports Server (NTRS)

Yu, Hongbin

2011-01-01

Mounting evidence for intercontinental transport of aerosols suggests that aerosols from a region could significantly affect climate and air quality in downwind regions and continents. Current assessment of these impacts for the most part has been based on global model simulations that show large variability. The aerosol intercontinental transport and its influence on air quality and climate involve many processes at local, regional, and intercontinental scales. There is a pressing need to establish modeling systems that bridge the wide range of scales. The modeling systems need to be evaluated and constrained by observations, including satellite measurements. Columnar loadings of dust and combustion aerosols can be derived from the MODIS and MISR measurements of total aerosol optical depth and particle size and shape information. Characteristic transport heights of dust and combustion aerosols can be determined from the CALIPSO lidar and AIRS measurements. CALIPSO liar and OMI UV technique also have a unique capability of detecting aerosols above clouds, which could offer some insights into aerosol lofting processes and the importance of above-cloud transport pathway. In this presentation, I will discuss our efforts of integrating these satellite measurements and models to assess the significance of intercontinental transport of dust and combustion aerosols on regional air quality and climate.

Processes affecting soil and groundwater contamination by DNAPL in low-permeability media

DOE Office of Scientific and Technical Information (OSTI.GOV)

McWhorter, D.B.

1996-08-01

This paper is one of a set of focus papers intended to document the current knowledge relevant to the contamination and remediation of soils and ground water by dense, nonaqueous phase liquids (DNAPL). The emphasis is on low permeability media such as fractured clay and till and unconsolidated, stratified formations. Basic concepts pertaining to immiscible-fluid mixtures are described and used to discuss such aspects as DNAPL transport, dissolved-phase transport, and equilibrium mass distributions. Several implications for remediation are presented. 27 refs., 8 figs., 4 tabs.

Examining offshore sediment-hosted contaminant transport from Hurricane Katrina: Chapter 7A in Science and the storms-the USGS response to the hurricanes of 2005

USGS Publications Warehouse

Swarzenski, Peter W.; Campbell, Pamela L.; Poore, Richard Z.; Osterman, Lisa E.; Rosenbauer, Robert J.

2007-01-01

A rapid-response expedition was organized after the passage of Hurricane Katrina to investigate potential offshore environmental impacts and storm-induced sediment-transport processes. Both water-column and sediment samples were collected on the Louisiana shelf for a full complement of organic, inorganic, and geochronological tracers. Based on excess lead-210 (210Pb) inventories in cores collected before and after Katrina, the surface sediments and their associated geochemical signatures were considerably affected by the passage of this storm.

Columbia River System Operation Review : Final Environmental Impact Statement, Appendix C: Anadromous Fish and Juvenile Fish Transportation.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Columbia River System Operation Review

1995-11-01

This Appendix C of the Final Environmental Impact Statement for the Columbia River System discusses impacts on andromous fish and juvenile fish transportation. The principal andromous fish in the Columbia basin include salmonid species (Chinook, coho, and sockeye salmon, and steelhead) and nonsalmoinid andromous species (sturgeon, lamprey, and shad). Major sections in this document include the following: background, scope and process; affected environment for salmon and steelhead, shaded, lamprey, sturgeon; study methods; description of alternatives: qualitative and quantitative findings.

Solute transport in streams of varying morphology inferred from a high resolution network of potentiometric wireless chloride sensors

NASA Astrophysics Data System (ADS)

Klaus, Julian; Smettem, Keith; Pfister, Laurent; Harris, Nick

2017-04-01

There is ongoing interest in understanding and quantifying the travel times and dispersion of solutes moving through stream environments, including the hyporheic zone and/or in-channel dead zones where retention affects biogeochemical cycling processes that are critical to stream ecosystem functioning. Modelling these transport and retention processes requires acquisition of tracer data from injection experiments where the concentrations are recorded downstream. Such experiments are often time consuming and costly, which may be the reason many modelling studies of chemical transport have tended to rely on relatively few well documented field case studies. This leads to the need of fast and cheap distributed sensor arrays that respond instantly and record chemical transport at points of interest on timescales of seconds at various locations in the stream environment. To tackle this challenge we present data from several tracer experiments carried out in the Attert river catchment in Luxembourg employing low-cost (in the order of a euro per sensor) potentiometric chloride sensors in a distributed array. We injected NaCl under various baseflow conditions in streams of different morphologies and observed solute transport at various distances and locations. This data is used to benchmark the sensors to data obtained from more expensive electrical conductivity meters. Furthermore, the data allowed spatial resolution of hydrodynamic mixing processes and identification of chemical 'dead zones' in the study reaches.

Predicting organic floc transport dynamics in shallow aquatic ecosystems: Insights from the field, the laboratory, and numerical modeling

USGS Publications Warehouse

Harvey, Judson W.; Noe, Gregory B.; Larsen, Laurel G.; Crimaldi, John P.

2009-01-01

Transport of particulate organic material can impact watershed sediment and nutrient budgets and can alter the geomorphologic evolution of shallow aquatic environments. Prediction of organic aggregate (“floc”) transport in these environments requires knowledge of how hydraulics and biota affect the entrainment, settling, and aggregation of particles. This study evaluated the aggregation and field transport dynamics of organic floc from a low‐gradient floodplain wetland with flow‐parallel ridges and sloughs in the Florida Everglades. Floc dynamics were evaluated in a rotating annular flume and in situ in the field. Under present managed conditions in the Everglades, floc is not entrained by mean flows but is suspended via biological production in the water column and bioturbation. Aggregation was a significant process affecting Everglades floc at high flume flow velocities (7.0 cm s−1) and during recovery from high flow; disaggregation was not significant for the tested flows. During moderate flows when floc dynamics are hydrodynamically controlled, it is possible to model floc transport using a single “operative floc diameter” that accurately predicts fluxes downstream and to the bed. In contrast, during high flows and recovery from high flows, aggregation dynamics should be simulated. When entrained by flow in open‐water sloughs, Everglades floc will be transported downstream in multiple deposition and reentrainment events but will undergo net settling when transported onto ridges of emergent vegetation. We hypothesize that net transport of material from open to vegetated areas during high flows is critical for forming and maintaining distinctive topographic patterning in the Everglades and other low‐gradient floodplains.

Secondary-Phase Stochastics in Lithium-Ion Battery Electrodes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mistry, Aashutosh N.; Smith, Kandler; Mukherjee, Partha P.

Lithium-ion battery electrodes exhibit complex interplay among multiple electrochemically coupled transport processes, which rely on the underlying functionality and relative arrangement of different constituent phases. The electrochemically inactive solid phases (e.g., conductive additive and binder, referred to as the secondary phase), while beneficial for improved electronic conductivity and mechanical integrity, may partially block the electrochemically active sites and introduce additional transport resistances in the pore (electrolyte) phase. In this work, the role of mesoscale interactions and inherent stochasticity in porous electrodes is elucidated in the context of short-range (interface) and long-range (transport) characteristics. The electrode microstructure significantly affects kinetically andmore » transport-limiting scenarios and thereby the cell performance. The secondary-phase morphology is also found to strongly influence the microstructure-transport-kinetics interactions. Apropos, strategies have been proposed for performance improvement via electrode microstructural modifications.« less

Secondary-Phase Stochastics in Lithium-Ion Battery Electrodes

DOE PAGES

Mistry, Aashutosh N.; Smith, Kandler; Mukherjee, Partha P.

2018-01-12

Lithium-ion battery electrodes exhibit complex interplay among multiple electrochemically coupled transport processes, which rely on the underlying functionality and relative arrangement of different constituent phases. The electrochemically inactive solid phases (e.g., conductive additive and binder, referred to as the secondary phase), while beneficial for improved electronic conductivity and mechanical integrity, may partially block the electrochemically active sites and introduce additional transport resistances in the pore (electrolyte) phase. In this work, the role of mesoscale interactions and inherent stochasticity in porous electrodes is elucidated in the context of short-range (interface) and long-range (transport) characteristics. The electrode microstructure significantly affects kinetically andmore » transport-limiting scenarios and thereby the cell performance. The secondary-phase morphology is also found to strongly influence the microstructure-transport-kinetics interactions. Apropos, strategies have been proposed for performance improvement via electrode microstructural modifications.« less

Plasticity of Astrocytic Coverage and Glutamate Transporter Expression in Adult Mouse Cortex

PubMed Central

Steiner, Pascal; Hirling, Harald; Welker, Egbert; Knott, Graham W

2006-01-01

Astrocytes play a major role in the removal of glutamate from the extracellular compartment. This clearance limits the glutamate receptor activation and affects the synaptic response. This function of the astrocyte is dependent on its positioning around the synapse, as well as on the level of expression of its high-affinity glutamate transporters, GLT1 and GLAST. Using Western blot analysis and serial section electron microscopy, we studied how a change in sensory activity affected these parameters in the adult cortex. Using mice, we found that 24 h of whisker stimulation elicited a 2-fold increase in the expression of GLT1 and GLAST in the corresponding cortical column of the barrel cortex. This returns to basal levels 4 d after the stimulation was stopped, whereas the expression of the neuronal glutamate transporter EAAC1 remained unaltered throughout. Ultrastructural analysis from the same region showed that sensory stimulation also causes a significant increase in the astrocytic envelopment of excitatory synapses on dendritic spines. We conclude that a period of modified neuronal activity and synaptic release of glutamate leads to an increased astrocytic coverage of the bouton–spine interface and an increase in glutamate transporter expression in astrocytic processes. PMID:17048987

Alteration in Auxin Homeostasis and Signaling by Overexpression Of PINOID Kinase Causes Leaf Growth Defects in Arabidopsis thaliana

PubMed Central

Saini, Kumud; Markakis, Marios N.; Zdanio, Malgorzata; Balcerowicz, Daria M.; Beeckman, Tom; De Veylder, Lieven; Prinsen, Els; Beemster, Gerrit T. S.; Vissenberg, Kris

2017-01-01

In plants many developmental processes are regulated by auxin and its directional transport. PINOID (PID) kinase helps to regulate this transport by influencing polar recruitment of PIN efflux proteins on the cellular membranes. We investigated how altered auxin levels affect leaf growth in Arabidopsis thaliana. Arabidopsis mutants and transgenic plants with altered PID expression levels were used to study the effect on auxin distribution and leaf development. Single knockouts showed small pleiotropic growth defects. Contrastingly, several leaf phenotypes related to changes in auxin concentrations and transcriptional activity were observed in PID overexpression (PIDOE) lines. Unlike in the knockout lines, the leaves of PIDOE lines showed an elevation in total indole-3-acetic acid (IAA). Accordingly, enhanced DR5-visualized auxin responses were detected, especially along the leaf margins. Kinematic analysis revealed that ectopic expression of PID negatively affects cell proliferation and expansion rates, yielding reduced cell numbers and small-sized cells in the PIDOE leaves. We used PIDOE lines as a tool to study auxin dose effects on leaf development and demonstrate that auxin, above a certain threshold, has a negative affect on leaf growth. RNA sequencing further showed how subtle PIDOE-related changes in auxin levels lead to transcriptional reprogramming of cellular processes. PMID:28659952

Mechanisms of the 40-70 Day Variability in the Yucatan Channel Volume Transport

NASA Astrophysics Data System (ADS)

van Westen, René M.; Dijkstra, Henk A.; Klees, Roland; Riva, Riccardo E. M.; Slobbe, D. Cornelis; van der Boog, Carine G.; Katsman, Caroline A.; Candy, Adam S.; Pietrzak, Julie D.; Zijlema, Marcel; James, Rebecca K.; Bouma, Tjeerd J.

2018-02-01

The Yucatan Channel connects the Caribbean Sea with the Gulf of Mexico and is the main outflow region of the Caribbean Sea. Moorings in the Yucatan Channel show high-frequent variability in kinetic energy (50-100 days) and transport (20-40 days), but the physical mechanisms controlling this variability are poorly understood. In this study, we show that the short-term variability in the Yucatan Channel transport has an upstream origin and arises from processes in the North Brazil Current. To establish this connection, we use data from altimetry and model output from several high resolution global models. A significant 40-70 day variability is found in the sea surface height in the North Brazil Current retroflection region with a propagation toward the Lesser Antilles. The frequency of variability is generated by intrinsic processes associated with the shedding of eddies, rather than by atmospheric forcing. This sea surface height variability is able to pass the Lesser Antilles, it propagates westward with the background ocean flow in the Caribbean Sea and finally affects the variability in the Yucatan Channel volume transport.

Investigation of the Physical Processes Governing Large-Scale Tracer Transport in the Stratosphere and Troposphere

NASA Technical Reports Server (NTRS)

Selkirk, Henry B.

2001-01-01

This report summarizes work conducted from January 1996 through April 1999 on a program of research to investigate the physical mechanisms that underlie the transport of trace constituents in the stratosphere-troposphere system. The primary scientific goal of the research has been to identify the processes which transport air masses within the lower stratosphere, particularly between the tropics and middle latitudes. This research was conducted in collaboration with the Subsonic Assessment (SASS) of the NASA Atmospheric Effects of Radiation Program (AEAP) and the Upper Atmospheric Research Program (UARP). The SASS program sought to understand the impact of the present and future fleets of conventional jet traffic on the upper troposphere and lower stratosphere, while complementary airborne observations under UARP seek to understand the complex interactions of dynamical and chemical processes that affect the ozone layer. The present investigation contributed to the goals of each of these by diagnosing the history of air parcels intercepted by NASA research aircraft in UARP and AEAP campaigns. This was done by means of a blend of trajectory analyses and tracer correlation techniques.

Key factors of low carbon development strategy for sustainable transport

NASA Astrophysics Data System (ADS)

Thaveewatanaseth, K.; Limjirakan, S.

2018-02-01

Cities become more vulnerable to climate change impacts causing by urbanization, economic growth, increasing of energy consumption and carbon dioxide (CO2) emissions. People who live in the cities have already been affected from the impacts in terms of socioeconomic and environmental aspects. Sustainable transport plays the key role in CO2 mitigation and contributes positive impacts on sustainable development for the cities. Several studies in megacities both in developed and developing countries support that mass transit system is an important transportation mode in CO2 mitigation and sustainable transport development. This paper aims to study key factors of low carbon development strategy for sustainable transport. The Bangkok Mass Rapid Transit System (MRT) located in Bangkok was the study area. Data collection was using semi-structured in-depth interview protocol with thirty respondents consisting of six groups i.e. governmental agencies, the MRT operators, consulting companies, international organizations, non-profit organizations, and experts. The research findings highlighted the major factors and supplemental elements composing of institution and technical capacity, institutional framework, policy setting and process, and plan of implementation that would support more effective strategic process for low carbon development strategy (LCDS) for sustainable transport. The study would highly recommend on readiness of institution and technical capacities, stakeholder mapping, high-level decision- makers participation, and a clear direction of the governmental policies that are strongly needed in achieving the sustainable transport.

What is needed to understand feedback mechanisms from agricultural and climate changes that can alter the hydrological system and the transport of sediments and agricultural chemicals?

NASA Astrophysics Data System (ADS)

Coupe, Richard; Payraudeau, Sylvain; Babcsányi, Izabella; Imfeld, Gwenaël

2015-04-01

Modern agriculture activities are constantly changing as producers try to produce a crop, keep their soils fertile, control pests, and prevent contamination of air and water resources. Because most of the world's arable land is already in production we must become more efficient if we are to feed and clothe the world's growing population as well as do this in a sustainable manner; leaving a legacy of fertile soil and clean water resources for our descendants. The objective of this paper is to demonstrate the importance of historical datasets and of developing new strategies to understand the effects of changing agricultural systems on the environment. Scientists who study agriculture and its effects on water must constantly adapt their strategies and evaluate how changing agricultural activities impact the environment. As well as understand from historical datasets on hydrology and agriculture how a changing climate or agricultural activity such as a change in tillage method might impact the processes that determine the movement of agricultural chemicals off of the target site. The 42.7 ha Hohrain (Rouffach, Alsace, France) vineyard experimental catchment offers several examples of how scientists have used historical data from this catchment to understand how the transport of agricultural chemicals may change due to a changing climate as well as how new strategies are developed for understanding the transport of agricultural chemicals. Runoff is a major process of pesticide transport from agricultural land to downstream aquatic ecosystems. The impact of rainfall characteristics on the transport of runoff-related pesticides is crucial to understanding how to prevent or minimize their movement now, but also in understanding how climate change might affect runoff. If we understand how rainfall characteristics affect the transport of pesticides, we can use climate change models to predict how those characteristics might change in the future and be better prepared for those changes. Recent analytical developments in the stable isotope analysis techniques have allowed the use of Cu isotopes as a tool to better understand the fate of copper in the environment. Copper (Cu) has long been used in agriculture mainly as a fungicide authorized in organic farming. Vineyards may become Cu-contaminated because large quantities of Cu are applied yearly (up to 6 kg ha-1 in the European Union) resulting in topsoil Cu concentrations in vineyards of 15 to 3200 mg/kg. Large amounts of Cu are removed from agricultural land by runoff and erosion, and this Cu may eventually contaminate aquatic ecosystems. The stable isotopes of Cu (65Cu/63Cu) are potentially powerful geochemical tracers for transport and transformation processes of anthropogenic Cu. Proof of concept work is underway in the Rouffach catchment to determine if the stable isotopes of Cu can be useful in understanding how changes in hydrology affect the transport of metals.

Tropospheric Chemistry

NASA Technical Reports Server (NTRS)

Mohnen, V.

1984-01-01

The fundamental processes that control the chemical composition and cycles of the global troposphere and how these processes and properties affect the physical behavior of the atmosphere are examined. The long-term information needs for tropospheric chemistry are: to be able to predict tropospheric responses to perturbations, both natural and anthropogenic, of these cycles, and to provide the information required for the maintenance and effective future management of the atmospheric component of our global life support system. The processes controlling global tropospheric biogeochemical cycles include: the input of trace species into the troposphere, their long-range transport and distribution as affected by the mean wind and vertical venting, their chemical transformations, including gas to particle conversion, leading to the appearance of aerosols or aqueous phase reactions inside cloud droplets, and their removal from the troposphere via wet (precipitation) and dry deposition.

The LptD chaperone LptE is not directly involved in lipopolysaccharide transport in Neisseria meningitidis.

PubMed

Bos, Martine P; Tommassen, Jan

2011-08-19

The biosynthesis of lipopolysaccharide (LPS) in gram-negative bacteria is well understood, in contrast to the transport to its destination, the outer leaflet of the outer membrane. In Escherichia coli, synthesis and transport of LPS are essential processes. Neisseria meningitidis, conversely, can survive without LPS and tolerates inactivation of genes involved in LPS synthesis and transport. Here, we analyzed whether the LptA, LptB, LptC, LptE, LptF, and LptG proteins, recently implicated in LPS transport in E. coli, function similarly in N. meningitidis. None of the analyzed proteins was essential in N. meningitidis, consistent with their expected roles in LPS transport and additionally demonstrating that they are not required for an essential process such as phospholipid transport. As expected, the absence of most of the Lpt proteins resulted in a severe defect in LPS transport. However, the absence of LptE did not disturb transport of LPS to the cell surface. LptE was found to be associated with LptD, and its absence affected total levels of LptD, suggesting a chaperone-like role for LptE in LptD biogenesis. The absence of a direct role of LptE in LPS transport was substantiated by bioinformatic analyses showing a low conservation of LptE in LPS-producing bacteria. Apparently, the role of LptE in N. meningitidis deviates from that in E. coli, suggesting that the Lpt system does not function in a completely conserved manner in all gram-negative bacteria.

The LptD Chaperone LptE Is Not Directly Involved in Lipopolysaccharide Transport in Neisseria meningitidis*

PubMed Central

Bos, Martine P.; Tommassen, Jan

2011-01-01

The biosynthesis of lipopolysaccharide (LPS) in Gram-negative bacteria is well understood, in contrast to the transport to its destination, the outer leaflet of the outer membrane. In Escherichia coli, synthesis and transport of LPS are essential processes. Neisseria meningitidis, conversely, can survive without LPS and tolerates inactivation of genes involved in LPS synthesis and transport. Here, we analyzed whether the LptA, LptB, LptC, LptE, LptF, and LptG proteins, recently implicated in LPS transport in E. coli, function similarly in N. meningitidis. None of the analyzed proteins was essential in N. meningitidis, consistent with their expected roles in LPS transport and additionally demonstrating that they are not required for an essential process such as phospholipid transport. As expected, the absence of most of the Lpt proteins resulted in a severe defect in LPS transport. However, the absence of LptE did not disturb transport of LPS to the cell surface. LptE was found to be associated with LptD, and its absence affected total levels of LptD, suggesting a chaperone-like role for LptE in LptD biogenesis. The absence of a direct role of LptE in LPS transport was substantiated by bioinformatic analyses showing a low conservation of LptE in LPS-producing bacteria. Apparently, the role of LptE in N. meningitidis deviates from that in E. coli, suggesting that the Lpt system does not function in a completely conserved manner in all Gram-negative bacteria. PMID:21705335

Drug Transporters and Na+/H+ Exchange Regulatory Factor PSD-95/Drosophila Discs Large/ZO-1 Proteins

PubMed Central

Walsh, Dustin R.; Nolin, Thomas D.

2015-01-01

Drug transporters govern the absorption, distribution, and elimination of pharmacologically active compounds. Members of the solute carrier and ATP binding-cassette drug transporter family mediate cellular drug uptake and efflux processes, thereby coordinating the vectorial movement of drugs across epithelial barriers. To exert their physiologic and pharmacological function in polarized epithelia, drug transporters must be targeted and stabilized to appropriate regions of the cell membrane (i.e., apical versus basolateral). Despite the critical importance of drug transporter membrane targeting, the mechanisms that underlie these processes are largely unknown. Several clinically significant drug transporters possess a recognition sequence that binds to PSD-95/Drosophila discs large/ZO-1 (PDZ) proteins. PDZ proteins, such as the Na+/H+ exchanger regulatory factor (NHERF) family, act to stabilize and organize membrane targeting of multiple transmembrane proteins, including many clinically relevant drug transporters. These PDZ proteins are normally abundant at apical membranes, where they tether membrane-delimited transporters. NHERF expression is particularly high at the apical membrane in polarized tissue such as intestinal, hepatic, and renal epithelia, tissues important to drug disposition. Several recent studies have highlighted NHERF proteins as determinants of drug transporter function secondary to their role in controlling membrane abundance and localization. Mounting evidence strongly suggests that NHERF proteins may have clinically significant roles in pharmacokinetics and pharmacodynamics of several pharmacologically active compounds and may affect drug action in cancer and chronic kidney disease. For these reasons, NHERF proteins represent a novel class of post-translational mediators of drug transport and novel targets for new drug development. PMID:26092975

Transcriptome Analysis of Al-Induced Genes in Buckwheat (Fagopyrum esculentum Moench) Root Apex: New Insight into Al Toxicity and Resistance Mechanisms in an Al Accumulating Species

PubMed Central

Xu, Jia Meng; Fan, Wei; Jin, Jian Feng; Lou, He Qiang; Chen, Wei Wei; Yang, Jian Li; Zheng, Shao Jian

2017-01-01

Relying on Al-activated root oxalate secretion, and internal detoxification and accumulation of Al, buckwheat is highly Al resistant. However, the molecular mechanisms responsible for these processes are still poorly understood. It is well-known that root apex is the critical region of Al toxicity that rapidly impairs a series of events, thus, resulting in inhibition of root elongation. Here, we carried out transcriptome analysis of the buckwheat root apex (0–1 cm) with regards to early response (first 6 h) to Al stress (20 μM), which is crucial for identification of both genes and processes involved in Al toxicity and tolerance mechanisms. We obtained 34,469 unigenes with 26,664 unigenes annotated in the NCBI database, and identified 589 up-regulated and 255 down-regulated differentially expressed genes (DEGs) under Al stress. Functional category analysis revealed that biological processes differ between up- and down-regulated genes, although ‘metabolic processes’ were the most affected category in both up- and down-regulated DEGs. Based on the data, it is proposed that Al stress affects a variety of biological processes that collectively contributes to the inhibition of root elongation. We identified 30 transporter genes and 27 transcription factor (TF) genes induced by Al. Gene homology analysis highlighted candidate genes encoding transporters associated with Al uptake, transport, detoxification, and accumulation. We also found that TFs play critical role in transcriptional regulation of Al resistance genes in buckwheat. In addition, gene duplication events are very common in the buckwheat genome, suggesting a possible role for gene duplication in the species’ high Al resistance. Taken together, the transcriptomic analysis of buckwheat root apex shed light on the processes that contribute to the inhibition of root elongation. Furthermore, the comprehensive analysis of both transporter genes and TF genes not only deep our understanding on the responses of buckwheat roots to Al toxicity but provide a good start for functional characterization of genes critical for Al tolerance. PMID:28702047

Water quality and irrigation [Chapter 10

Treesearch

Thomas D. Landis; Kim M. Wilkinson

2009-01-01

Water is the single most important biological factor affecting plant growth and health. Water is essential for almost every plant process: photosynthesis, nutrient transport, and cell expansion and development. In fact, 80 to 90 percent of a seedling's weight is made up of water. Therefore, irrigation management is the most critical aspect of nursery operations....

A Hierarchical Model and Analysis of Factors Affecting the Adoption of Timber as a Bridge

Treesearch

Robert L. Smith; Robert J. Bush; Daniel L. Schmoldt

1995-01-01

The Analytical Hierarchy Process was used to characterize the bridge material selection decisions of highway engineers and local highway officials across the United States. State Department of Transportation engineers, private consulting engineers, and local highway officials were personally interviewed in Mississippi, Virginia, Washington, and Wisconsin to identify...

Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array

USDA-ARS?s Scientific Manuscript database

Natural antisense transcripts (NATs) are transcripts of the opposite DNA strand to the sense-strand either at the same locus (cis-encoded) or a different locus (trans-encoded). They can affect gene expression at multiple stages including transcription, RNA processing and transport, and translation....

Ecology of forest insect invasions

Treesearch

E.G. Brockerhoff; A.M. Liebhold

2017-01-01

Forests in virtually all regions of the world are being affected by invasions of non-native insects. We conducted an in-depth review of the traits of successful invasive forest insects and the ecological processes involved in insect invasions across the universal invasion phases (transport and arrival, establishment, spread and impacts). Most forest insect invasions...

An Efficient Modelling Approach for Prediction of Porosity Severity in Composite Structures

NASA Technical Reports Server (NTRS)

Bedayat, Houman; Forghani, Alireza; Hickmott, Curtis; Roy, Martin; Palmieri, Frank; Grimsley, Brian; Coxon, Brian; Fernlund, Goran

2017-01-01

Porosity, as a manufacturing process-induced defect, highly affects the mechanical properties of cured composites. Multiple phenomena affect the formation of porosity during the cure process. Porosity sources include entrapped air, volatiles and off-gassing as well as bag and tool leaks. Porosity sinks are the mechanisms that contribute to reducing porosity, including gas transport, void shrinkage and collapse as well as resin flow into void space. Despite the significant progress in porosity research, the fundamentals of porosity in composites are not yet fully understood. The highly coupled multi-physics and multi-scale nature of porosity make it a complicated problem to predict. Experimental evidence shows that resin pressure history throughout the cure cycle plays an important role in the porosity of the cured part. Maintaining high resin pressure results in void shrinkage and collapse keeps volatiles in solution thus preventing off-gassing and bubble formation. This study summarizes the latest development of an efficient FE modeling framework to simulate the gas and resin transport mechanisms that are among the major phenomena contributing to porosity.

A comprehensive one-dimensional numerical model for solute transport in rivers

NASA Astrophysics Data System (ADS)

Barati Moghaddam, Maryam; Mazaheri, Mehdi; MohammadVali Samani, Jamal

2017-01-01

One of the mechanisms that greatly affect the pollutant transport in rivers, especially in mountain streams, is the effect of transient storage zones. The main effect of these zones is to retain pollutants temporarily and then release them gradually. Transient storage zones indirectly influence all phenomena related to mass transport in rivers. This paper presents the TOASTS (third-order accuracy simulation of transient storage) model to simulate 1-D pollutant transport in rivers with irregular cross-sections under unsteady flow and transient storage zones. The proposed model was verified versus some analytical solutions and a 2-D hydrodynamic model. In addition, in order to demonstrate the model applicability, two hypothetical examples were designed and four sets of well-established frequently cited tracer study data were used. These cases cover different processes governing transport, cross-section types and flow regimes. The results of the TOASTS model, in comparison with two common contaminant transport models, shows better accuracy and numerical stability.

Sediment Transport Dynamics and Bedform Evolution During Unsteady Flows

NASA Astrophysics Data System (ADS)

Hu, H.; Parsons, D. R.; Ockelford, A.; Hardy, R. J.; Ashworth, P. J.; Best, J.

2016-12-01

Dunes are ubiquitous features in sand bed rivers and estuaries, and their formation, growth and kinematics play a dominant role in boundary flow structure, flow resistance and sediment transport processes. However, bedform evolution and dynamics during the rising/falling limb of a flood wave remain poorly understood. Herein, we report on a series of flume experiments, undertaken at the University of Hull's Total Environment Simulator flume/wave tank facility, with imposed flow variations and different hydrographs: i) a sudden (shock) change, ii) a fast flood wave and iii) a slow flood wave. Our analysis shows that, because of changes of sediment transport mechanisms with discharge, the sediment flux rather than bedform migration rate is a more appropriate parameter to relate to transport stage. This is particularly the case during bedload transport dominated periods at lower flow discharge, where a strong power law relationship was detected. In terms of varying processes across the hydrograph limbs, bedform evolution during the rising limb is dominated not only by bedform amalgamation but also by the washing out of smaller-scale bedforms. Furthermore, bedform growth is independent of the rising rate of the hydrograph limb, while evolution of bedform decay is affected by the rate of discharge decrease. This results in an anticlockwise hysteresis between transport stage and total flux was found in fast wave experiment, indicating a significant role of the change in sediment transport mechanisms on bedform evolution. Moreover, analysis on the variation of deformation fraction (F, ratio of the deformation flux to the total bed material flux) suggests that net degradation of the bed enhances bedform deformation and leads to a higher F ( 0.65). This work extends our knowledge on how dunes generate and develop under variable flows and has begun to explore how variations in transport stage can be coupled with the variation in sediment transport mechanisms, and/or sediment supply which can help improve the modelling of sediment transport processes.

Defect-mediated transport and electronic irradiation effect in individual domains of CVD-grown monolayer MoS 2

DOE PAGES

Durand, Corentin; Zhang, Xiaoguang; Fowlkes, Jason; ...

2015-01-16

We study the electrical transport properties of atomically thin individual crystalline grains of MoS 2 with four-probe scanning tunneling microscopy. The monolayer MoS 2 domains are synthesized by chemical vapor deposition on SiO 2/Si substrate. Temperature dependent measurements on conductance and mobility show that transport is dominated by an electron charge trapping and thermal release process with very low carrier density and mobility. The effects of electronic irradiation are examined by exposing the film to electron beam in the scanning electron microscope in an ultrahigh vacuum environment. The irradiation process is found to significantly affect the mobility and the carriermore » density of the material, with the conductance showing a peculiar time-dependent relaxation behavior. It is suggested that the presence of defects in active MoS 2 layer and dielectric layer create charge trapping sites, and a multiple trapping and thermal release process dictates the transport and mobility characteristics. The electron beam irradiation promotes the formation of defects and impact the electrical properties of MoS 2. Finally, our study reveals the important roles of defects and the electron beam irradiation effects in the electronic properties of atomic layers of MoS 2.« less

Spatial model of convective solute transport in brain extracellular space does not support a “glymphatic” mechanism

PubMed Central

Jin, Byung-Ju; Smith, Alex J.

2016-01-01

A “glymphatic system,” which involves convective fluid transport from para-arterial to paravenous cerebrospinal fluid through brain extracellular space (ECS), has been proposed to account for solute clearance in brain, and aquaporin-4 water channels in astrocyte endfeet may have a role in this process. Here, we investigate the major predictions of the glymphatic mechanism by modeling diffusive and convective transport in brain ECS and by solving the Navier–Stokes and convection–diffusion equations, using realistic ECS geometry for short-range transport between para-arterial and paravenous spaces. Major model parameters include para-arterial and paravenous pressures, ECS volume fraction, solute diffusion coefficient, and astrocyte foot-process water permeability. The model predicts solute accumulation and clearance from the ECS after a step change in solute concentration in para-arterial fluid. The principal and robust conclusions of the model are as follows: (a) significant convective transport requires a sustained pressure difference of several mmHg between the para-arterial and paravenous fluid and is not affected by pulsatile pressure fluctuations; (b) astrocyte endfoot water permeability does not substantially alter the rate of convective transport in ECS as the resistance to flow across endfeet is far greater than in the gaps surrounding them; and (c) diffusion (without convection) in the ECS is adequate to account for experimental transport studies in brain parenchyma. Therefore, our modeling results do not support a physiologically important role for local parenchymal convective flow in solute transport through brain ECS. PMID:27836940

Spatiotemporal Monte Carlo transport methods in x-ray semiconductor detectors: application to pulse-height spectroscopy in a-Se.

PubMed

Fang, Yuan; Badal, Andreu; Allec, Nicholas; Karim, Karim S; Badano, Aldo

2012-01-01

The authors describe a detailed Monte Carlo (MC) method for the coupled transport of ionizing particles and charge carriers in amorphous selenium (a-Se) semiconductor x-ray detectors, and model the effect of statistical variations on the detected signal. A detailed transport code was developed for modeling the signal formation process in semiconductor x-ray detectors. The charge transport routines include three-dimensional spatial and temporal models of electron-hole pair transport taking into account recombination and trapping. Many electron-hole pairs are created simultaneously in bursts from energy deposition events. Carrier transport processes include drift due to external field and Coulombic interactions, and diffusion due to Brownian motion. Pulse-height spectra (PHS) have been simulated with different transport conditions for a range of monoenergetic incident x-ray energies and mammography radiation beam qualities. Two methods for calculating Swank factors from simulated PHS are shown, one using the entire PHS distribution, and the other using the photopeak. The latter ignores contributions from Compton scattering and K-fluorescence. Comparisons differ by approximately 2% between experimental measurements and simulations. The a-Se x-ray detector PHS responses simulated in this work include three-dimensional spatial and temporal transport of electron-hole pairs. These PHS were used to calculate the Swank factor and compare it with experimental measurements. The Swank factor was shown to be a function of x-ray energy and applied electric field. Trapping and recombination models are all shown to affect the Swank factor.

Spatial model of convective solute transport in brain extracellular space does not support a "glymphatic" mechanism.

PubMed

Jin, Byung-Ju; Smith, Alex J; Verkman, Alan S

2016-12-01

A "glymphatic system," which involves convective fluid transport from para-arterial to paravenous cerebrospinal fluid through brain extracellular space (ECS), has been proposed to account for solute clearance in brain, and aquaporin-4 water channels in astrocyte endfeet may have a role in this process. Here, we investigate the major predictions of the glymphatic mechanism by modeling diffusive and convective transport in brain ECS and by solving the Navier-Stokes and convection-diffusion equations, using realistic ECS geometry for short-range transport between para-arterial and paravenous spaces. Major model parameters include para-arterial and paravenous pressures, ECS volume fraction, solute diffusion coefficient, and astrocyte foot-process water permeability. The model predicts solute accumulation and clearance from the ECS after a step change in solute concentration in para-arterial fluid. The principal and robust conclusions of the model are as follows: (a) significant convective transport requires a sustained pressure difference of several mmHg between the para-arterial and paravenous fluid and is not affected by pulsatile pressure fluctuations; (b) astrocyte endfoot water permeability does not substantially alter the rate of convective transport in ECS as the resistance to flow across endfeet is far greater than in the gaps surrounding them; and (c) diffusion (without convection) in the ECS is adequate to account for experimental transport studies in brain parenchyma. Therefore, our modeling results do not support a physiologically important role for local parenchymal convective flow in solute transport through brain ECS. © 2016 Jin et al.

The fish gill: site of action and model for toxic effects of environmental pollutants.

PubMed Central

Evans, D H

1987-01-01

The gill epithelium is the site of gas exchange, ionic regulation, acid-base balance, and nitrogenous waste excretion by fishes. The last three processes are controlled by passive and active transport of various solutes across the epithelium. Various environmental pollutants (e.g., heavy metals, acid rain, and organic xenobiotics) have been found to affect the morphology of the gill epithelium. Associated with these morphological pathologies, one finds alterations in blood ionic levels, as well as gill Na,K-activated ATPase activity and ionic fluxes. Such physiological disturbances may underly the toxicities of these pollutants. In addition, the epithelial transport steps which are affected in the fish gill model resemble those described in the human gut and kidney, sites of action of a variety of environmental toxins. Images FIGURE 1. a FIGURE 1. b FIGURE 3. PMID:3297663

Nicotine transport in lung and non-lung epithelial cells.

PubMed

Takano, Mikihisa; Kamei, Hidetaka; Nagahiro, Machi; Kawami, Masashi; Yumoto, Ryoko

2017-11-01

Nicotine is rapidly absorbed from the lung alveoli into systemic circulation during cigarette smoking. However, mechanism underlying nicotine transport in alveolar epithelial cells is not well understood to date. In the present study, we characterized nicotine uptake in lung epithelial cell lines A549 and NCI-H441 and in non-lung epithelial cell lines HepG2 and MCF-7. Characteristics of [ 3 H]nicotine uptake was studied using these cell lines. Nicotine uptake in A549 cells occurred in a time- and temperature-dependent manner and showed saturation kinetics, with a Km value of 0.31mM. Treatment with some organic cations such as diphenhydramine and pyrilamine inhibited nicotine uptake, whereas treatment with organic cations such as carnitine and tetraethylammonium did not affect nicotine uptake. Extracellular pH markedly affected nicotine uptake, with high nicotine uptake being observed at high pH up to 11.0. Modulation of intracellular pH with ammonium chloride also affected nicotine uptake. Treatment with valinomycin, a potassium ionophore, did not significantly affect nicotine uptake, indicating that nicotine uptake is an electroneutral process. For comparison, we assessed the characteristics of nicotine uptake in another lung epithelial cell line NCI-H441 and in non-lung epithelial cell lines HepG2 and MCF-7. Interestingly, these cell lines showed similar characteristics of nicotine uptake with respect to pH dependency and inhibition by various organic cations. The present findings suggest that a similar or the same pH-dependent transport system is involved in nicotine uptake in these cell lines. A novel molecular mechanism of nicotine transport is proposed. Copyright © 2017 Elsevier Inc. All rights reserved.

Recent Advances in Interface Engineering for Planar Heterojunction Perovskite Solar Cells.

PubMed

Yin, Wei; Pan, Lijia; Yang, Tingbin; Liang, Yongye

2016-06-25

Organic-inorganic hybrid perovskite solar cells are considered as one of the most promising next-generation solar cells due to their advantages of low-cost precursors, high power conversion efficiency (PCE) and easy of processing. In the past few years, the PCEs have climbed from a few to over 20% for perovskite solar cells. Recent developments demonstrate that perovskite exhibits ambipolar semiconducting characteristics, which allows for the construction of planar heterojunction (PHJ) perovskite solar cells. PHJ perovskite solar cells can avoid the use of high-temperature sintered mesoporous metal oxides, enabling simple processing and the fabrication of flexible and tandem perovskite solar cells. In planar heterojunction materials, hole/electron transport layers are introduced between a perovskite film and the anode/cathode. The hole and electron transporting layers are expected to enhance exciton separation, charge transportation and collection. Further, the supporting layer for the perovskite film not only plays an important role in energy-level alignment, but also affects perovskite film morphology, which have a great effect on device performance. In addition, interfacial layers also affect device stability. In this review, recent progress in interfacial engineering for PHJ perovskite solar cells will be reviewed, especially with the molecular interfacial materials. The supporting interfacial layers for the optimization of perovskite films will be systematically reviewed. Finally, the challenges remaining in perovskite solar cells research will be discussed.

The anatomy and physiology of normal and abnormal swallowing in oropharyngeal dysphagia.

PubMed

Sasegbon, A; Hamdy, S

2017-11-01

Eating and drinking are enjoyable activities that positively impact on an individual's quality of life. The ability to swallow food and fluid is integral to the process of eating. Swallowing occupies a dual role being both part of the enjoyment of eating and being a critically important utilitarian activity to enable adequate nutrition and hydration. Any impairment to the process of swallowing can negatively affect a person's perception of their quality of life. The process of swallowing is highly complex and involves muscles in the mouth, pharynx, larynx, and esophagus. The oropharynx is the anatomical region encompassing the oral cavity and the pharynx. Food must be masticated, formed into a bolus and transported to the pharynx by the tongue whereas fluids are usually held within the mouth before being transported ab-orally. The bolus must then be transported through the pharynx to the esophagus without any matter entering the larynx. The muscles needed for all these steps are coordinated by swallowing centers within the brainstem which are supplied with sensory information by afferent nerve fibers from several cranial nerves. The swallowing centers also receive modulatory input from higher centers within the brain. Hence, a swallow has both voluntary and involuntary physiologic components and the term dysphagia is given to difficult swallowing while oropharyngeal dysphagia is difficult swallowing due to pathology within the oropharynx. Problems affecting any point along the complex swallowing pathway can result in dysphagia. This review focuses on the anatomy and physiology behind normal and abnormal oropharyngeal swallowing. It also details the common diseases and pathology causing oropharyngeal dysphagia. © 2017 John Wiley & Sons Ltd.

On the use of rhodamine WT for the characterization of stream hydrodynamics and transient storage

USGS Publications Warehouse

Runkel, Robert L.

2015-01-01

Recent advances in fluorometry have led to increased use of rhodamine WT as a tracer in streams and rivers. In light of this increased use, a review of the dye's behavior in freshwater systems is presented. Studies in the groundwater literature indicate that rhodamine WT is transported nonconservatively, with sorption removing substantial amounts of tracer mass. Column studies document a two-step breakthrough curve in which two structural isomers are chromatographically separated. Although the potential for nonconservative transport is acknowledged in the surface water literature, many studies assume that sorptive losses will not affect the characterization of physical transport processes. A literature review and modeling analysis indicates that this assumption is valid for quantification of physical properties that are based on the bulk of the tracer mass (traveltime), and invalid for the characterization of processes represented by the tracer tail (transient storage attributable to hyporheic exchange). Rhodamine WT should be considered nonconservative in the hyporheic zone due to nonconservative behavior demonstrated for similar conditions in groundwater. As such, rhodamine WT should not be used as a quantitative tracer in hyporheic zone investigations, including the study of long flow paths and the development of models describing hyporheic zone processes. Rhodamine WT may be used to qualitatively characterize storage in large systems, where there are few practical alternatives. Qualitative investigations should rely on early portions of the tracer profile, making use of the temporal resolution afforded by in situ fluorometry, while discarding later parts of the tracer profile that are adversely affected by sorption.

Conformational transitions of uracil transporter UraA from Escherichia coli: a molecular simulation study.

PubMed

Yang, Liu; Yang, Lianjuan; Yu, Hui; Liu, Lu; Zhao, Xi; Huang, Xuri

2017-10-26

The Escherichia coli uracil/H + symporter UraA, known as the representative nucleobase/cation symporter 2(NCS2) protein, gets involved in several crucial physiological processes for most living organisms on Earth, such as the uptake of nucleobases and transport of vitamin C. Some experiments proposed a working model to explain proton-coupling and uracil transporting process of UraA on the basis of the crystal structure of NCS2 protein, but the details of conformational changes remained unknown. Thus, in order to make clear conformational changes caused by the protonation and deprotonation process of some conserved proton-coupled residues, the molecular dynamics simulation was used to study the conformation of UraA complexes in different protonation states. The results demonstrated that the protonation of residue Glu241 and Glu290 resulted in the whole conformational transition from the inward-open to the outward-open state. It can be concluded that Glu290 was crucial in a network of hydrogen-bonds in the middle of the core domain involving another essential residue, mainly including tyr288 in TM8, Tyr342, Ser338 in TM12, and the network of hydrogen-bonds was the key to maintain the stability of conformation. Protonation of Glu290 affects the stability of network of H-bond and changed the domains TM3 TM10 TM12. Thus, Glu290 may play a vital role as a 'proton trigger' that affects spatial structural of amino and residues near substrate binding side leading to an outward-open conformation transition.

INEEL Subregional Conceptual Model Report Volume 2: Summary of Existing Knowledge of Geochemical Influences on the Fate and Transport of Contaminants in the Subsurface at the INEEL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Paul L. Wichlacz; Robert C. Starr; Brennon Orr

2003-09-01

This document summarizes previous descriptions of geochemical system conceptual models for the vadose zone and groundwater zone (aquifer) beneath the Idaho National Engineering and Environmental Laboratory (INEEL). The primary focus is on groundwater because contaminants derived from wastes disposed at INEEL are present in groundwater, groundwater provides a pathway for potential migration to receptors, and because geochemical characteristics in and processes in the aquifer can substantially affect the movement, attenuation, and toxicity of contaminants. The secondary emphasis is perched water bodies in the vadose zone. Perched water eventually reaches the regional groundwater system, and thus processes that affect contaminants inmore » the perched water bodies are important relative to the migration of contaminants into groundwater. Similarly, processes that affect solutes during transport from nearsurface disposal facilities downward through the vadose zone to the aquifer are relevant. Sediments in the vadose zone can affect both water and solute transport by restricting the downward migration of water sufficiently that a perched water body forms, and by retarding solute migration via ion exchange. Geochemical conceptual models have been prepared by a variety of researchers for different purposes. They have been published in documents prepared by INEEL contractors, the United States Geological Survey (USGS), academic researchers, and others. The documents themselves are INEEL and USGS reports, and articles in technical journals. The documents reviewed were selected from citation lists generated by searching the INEEL Technical Library, the INEEL Environmental Restoration Optical Imaging System, and the ISI Web of Science databases. The citation lists were generated using the keywords ground water, groundwater, chemistry, geochemistry, contaminant, INEL, INEEL, and Idaho. In addition, a list of USGS documents that pertain to the INEEL was obtained and manually searched. The documents that appeared to be the most pertinent were selected from further review. These documents are tabulated in the citation list. This report summarizes existing geochemical conceptual models, but does not attempt to generate a new conceptual model or select the ''right'' model. This document is organized as follows. Geochemical models are described in general in Section 2. Geochemical processes that control the transport and fate of contaminants introduced into groundwater are described in Section 3. The natural geochemistry of the Eastern Snake River Plain Aquifer (SRPA) is described in Section 4. The effect of waste disposal on the INEEL subsurface is described in Section 5. The geochemical behavior of the major contaminants is described in Section 6. Section 7 describes the site-specific geochemical models developed for various INEEL facilities.« less

Physiological adjustment to salt stress in Jatropha curcas is associated with accumulation of salt ions, transport and selectivity of K+, osmotic adjustment and K+/Na+ homeostasis.

PubMed

Silva, E N; Silveira, J A G; Rodrigues, C R F; Viégas, R A

2015-09-01

This study assessed the capacity of Jatropha curcas to physiologically adjust to salinity. Seedlings were exposed to increasing NaCl concentrations (25, 50, 75 and 100 mm) for 15 days. Treatment without NaCl was adopted as control. Shoot dry weight was strongly reduced by NaCl, reaching values of 35% to 65% with 25 to 100 mm NaCl. The shoot/root ratio was only affected with 100 mm NaCl. Relative water content (RWC) increased only with 100 mm NaCl, while electrolyte leakage (EL) was much enhanced with 50 mm NaCl. The Na(+) transport rate to the shoot was more affected with 50 and 100 mm NaCl. In parallel, Cl(-) transport rate increased with 75 and 100 mm NaCl, while K(+) transport rate fell from 50 mm to 100 mm NaCl. In roots, Na(+) and Cl(-) transport rates fell slightly only in 50 mm (to Na(+)) and 50 and 100 mm (to Cl(-)) NaCl, while K(+) transport rate fell significantly with increasing NaCl. In general, our data demonstrate that J. curcas seedlings present changes in key physiological processes that allow this species to adjust to salinity. These responses are related to accumulation of Na(+) and Cl(-) in leaves and roots, K(+)/Na(+) homeostasis, transport of K(+) and selectivity (K-Na) in roots, and accumulation of organic solutes contributing to osmotic adjustment of the species. © 2015 German Botanical Society and The Royal Botanical Society of the Netherlands.

The superfamily keeps growing: Identification in trypanosomatids of RibJ, the first riboflavin transporter family in protists.

PubMed

Balcazar, Darío E; Vanrell, María Cristina; Romano, Patricia S; Pereira, Claudio A; Goldbaum, Fernando A; Bonomi, Hernán R; Carrillo, Carolina

2017-04-01

Trypanosomatid parasites represent a major health issue affecting hundreds of million people worldwide, with clinical treatments that are partially effective and/or very toxic. They are responsible for serious human and plant diseases including Trypanosoma cruzi (Chagas disease), Trypanosoma brucei (Sleeping sickness), Leishmania spp. (Leishmaniasis), and Phytomonas spp. (phytoparasites). Both, animals and trypanosomatids lack the biosynthetic riboflavin (vitamin B2) pathway, the vital precursor of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) cofactors. While metazoans obtain riboflavin from the diet through RFVT/SLC52 transporters, the riboflavin transport mechanisms in trypanosomatids still remain unknown. Here, we show that riboflavin is imported with high affinity in Trypanosoma cruzi, Trypanosoma brucei, Leishmania (Leishmania) mexicana, Crithidia fasciculata and Phytomonas Jma using radiolabeled riboflavin transport assays. The vitamin is incorporated through a saturable carrier-mediated process. Effective competitive uptake occurs with riboflavin analogs roseoflavin, lumiflavin and lumichrome, and co-factor derivatives FMN and FAD. Moreover, important biological processes evaluated in T. cruzi (i.e. proliferation, metacyclogenesis and amastigote replication) are dependent on riboflavin availability. In addition, the riboflavin competitive analogs were found to interfere with parasite physiology on riboflavin-dependent processes. By means of bioinformatics analyses we identified a novel family of riboflavin transporters (RibJ) in trypanosomatids. Two RibJ members, TcRibJ and TbRibJ from T. cruzi and T. brucei respectively, were functionally characterized using homologous and/or heterologous expression systems. The RibJ family represents the first riboflavin transporters found in protists and the third eukaryotic family known to date. The essentiality of riboflavin for trypanosomatids, and the structural/biochemical differences that RFVT/SLC52 and RibJ present, make the riboflavin transporter -and its downstream metabolism- a potential trypanocidal drug target.

The superfamily keeps growing: Identification in trypanosomatids of RibJ, the first riboflavin transporter family in protists

PubMed Central

Balcazar, Darío E.; Vanrell, María Cristina; Romano, Patricia S.; Pereira, Claudio A.; Goldbaum, Fernando A.; Bonomi, Hernán R.; Carrillo, Carolina

2017-01-01

Background Trypanosomatid parasites represent a major health issue affecting hundreds of million people worldwide, with clinical treatments that are partially effective and/or very toxic. They are responsible for serious human and plant diseases including Trypanosoma cruzi (Chagas disease), Trypanosoma brucei (Sleeping sickness), Leishmania spp. (Leishmaniasis), and Phytomonas spp. (phytoparasites). Both, animals and trypanosomatids lack the biosynthetic riboflavin (vitamin B2) pathway, the vital precursor of flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) cofactors. While metazoans obtain riboflavin from the diet through RFVT/SLC52 transporters, the riboflavin transport mechanisms in trypanosomatids still remain unknown. Methodology/Principal findings Here, we show that riboflavin is imported with high affinity in Trypanosoma cruzi, Trypanosoma brucei, Leishmania (Leishmania) mexicana, Crithidia fasciculata and Phytomonas Jma using radiolabeled riboflavin transport assays. The vitamin is incorporated through a saturable carrier-mediated process. Effective competitive uptake occurs with riboflavin analogs roseoflavin, lumiflavin and lumichrome, and co-factor derivatives FMN and FAD. Moreover, important biological processes evaluated in T. cruzi (i.e. proliferation, metacyclogenesis and amastigote replication) are dependent on riboflavin availability. In addition, the riboflavin competitive analogs were found to interfere with parasite physiology on riboflavin-dependent processes. By means of bioinformatics analyses we identified a novel family of riboflavin transporters (RibJ) in trypanosomatids. Two RibJ members, TcRibJ and TbRibJ from T. cruzi and T. brucei respectively, were functionally characterized using homologous and/or heterologous expression systems. Conclusions/Significance The RibJ family represents the first riboflavin transporters found in protists and the third eukaryotic family known to date. The essentiality of riboflavin for trypanosomatids, and the structural/biochemical differences that RFVT/SLC52 and RibJ present, make the riboflavin transporter -and its downstream metabolism- a potential trypanocidal drug target. PMID:28406895

Low-Frequency Oscillations and Transport Processes Induced by Multiscale Transverse Structures in the Polar Wind Outflow: A Three-Dimensional Simulation

NASA Technical Reports Server (NTRS)

Ganguli, Supriya B.; Gavrishchaka, Valeriy V.

1999-01-01

Multiscale transverse structures in the magnetic-field-aligned flows have been frequently observed in the auroral region by FAST and Freja satellites. A number of multiscale processes, such as broadband low-frequency oscillations and various cross-field transport effects are well correlated with these structures. To study these effects, we have used our three-dimensional multifluid model with multiscale transverse inhomogeneities in the initial velocity profile. Self-consistent-frequency mode driven by local transverse gradients in the generation of the low field-aligned ion flow and associated transport processes were simulated. Effects of particle interaction with the self-consistent time-dependent three-dimensional wave potential have been modeled using a distribution of test particles. For typical polar wind conditions it has been found that even large-scale (approximately 50 - 100 km) transverse inhomogeneities in the flow can generate low-frequency oscillations that lead to significant flow modifications, cross-field particle diffusion, and other transport effects. It has also been shown that even small-amplitude (approximately 10 - 20%) short-scale (approximately 10 km) modulations of the original large-scale flow profile significantly increases low-frequency mode generation and associated cross-field transport, not only at the local spatial scales imposed by the modulations but also on global scales. Note that this wave-induced cross-field transport is not included in any of the global numerical models of the ionosphere, ionosphere-thermosphere, or ionosphere-polar wind. The simulation results indicate that the wave-induced cross-field transport not only affects the ion outflow rates but also leads to a significant broadening of particle phase-space distribution and transverse particle diffusion.

Moditored unsaturated soil transport processes as a support for large scale soil and water management

NASA Astrophysics Data System (ADS)

Vanclooster, Marnik

2010-05-01

The current societal demand for sustainable soil and water management is very large. The drivers of global and climate change exert many pressures on the soil and water ecosystems, endangering appropriate ecosystem functioning. The unsaturated soil transport processes play a key role in soil-water system functioning as it controls the fluxes of water and nutrients from the soil to plants (the pedo-biosphere link), the infiltration flux of precipitated water to groundwater and the evaporative flux, and hence the feed back from the soil to the climate system. Yet, unsaturated soil transport processes are difficult to quantify since they are affected by huge variability of the governing properties at different space-time scales and the intrinsic non-linearity of the transport processes. The incompatibility of the scales between the scale at which processes reasonably can be characterized, the scale at which the theoretical process correctly can be described and the scale at which the soil and water system need to be managed, calls for further development of scaling procedures in unsaturated zone science. It also calls for a better integration of theoretical and modelling approaches to elucidate transport processes at the appropriate scales, compatible with the sustainable soil and water management objective. Moditoring science, i.e the interdisciplinary research domain where modelling and monitoring science are linked, is currently evolving significantly in the unsaturated zone hydrology area. In this presentation, a review of current moditoring strategies/techniques will be given and illustrated for solving large scale soil and water management problems. This will also allow identifying research needs in the interdisciplinary domain of modelling and monitoring and to improve the integration of unsaturated zone science in solving soil and water management issues. A focus will be given on examples of large scale soil and water management problems in Europe.

Development and evaluation of the bacterial fate and transport module for the Agricultural Policy/Environmental eXtender (APEX) model.

PubMed

Hong, Eun-Mi; Park, Yongeun; Muirhead, Richard; Jeong, Jaehak; Pachepsky, Yakov A

2018-02-15

The Agricultural Policy/Environmental eXtender (APEX) is a watershed-scale water quality model that includes detailed representation of agricultural management. The objective of this work was to develop a process-based model for simulating the fate and transport of manure-borne bacteria on land and in streams with the APEX model. The bacteria model utilizes manure erosion rates to estimate the amount of edge-of-field bacteria export. Bacteria survival in manure is simulated as a two-stage process separately for each manure application event. In-stream microbial fate and transport processes include bacteria release from streambeds due to sediment resuspension during high flow events, active release from the streambed sediment during low flow periods, bacteria settling with sediment, and survival. Default parameter values were selected from published databases and evaluated based on field observations. The APEX model with the newly developed microbial fate and transport module was applied to simulate fate and transport of the fecal indicator bacterium Escherichia coli in the Toenepi watershed, New Zealand that was monitored for seven years. The stream network of the watershed ran through grazing lands with daily bovine waste deposition. Results show that the APEX with the bacteria module reproduced well the monitored pattern of E. coli concentrations at the watershed outlet. The APEX with the microbial fate and transport module will be utilized for predicting microbial quality of water as affected by various agricultural practices, evaluating monitoring protocols, and supporting the selection of management practices based on regulations that rely on fecal indicator bacteria concentrations. Published by Elsevier B.V.

Environmental Stress-mediated EPS Production Shape Microbial Activity on Various Hydrated Rough Surfaces

NASA Astrophysics Data System (ADS)

Wang, G.; Liu, L.; Chen, G.

2016-12-01

The complex environmental physical and chemical processes and interplay with the associating biological responses are keys to understanding the environmental microbiology ensconced in environmental remediation, water quality control, food safety, nutrient cycling, and etc., yet remain poorly understood. Using experimental micromodels, we study how environmental conditions (e.g., hydration fluctuation, nutrient limitation, pH variation, etc.) affect microbial extracellular polymeric substances (EPS) production and their configuration within various hydrated surfaces, and impacts on microbial motility, surface attachment, aggregation, and other bioremediation activities. To elucidate the potential mechanisms underlying the complex bio-physicochemical processes, we developed an individual-based and spatio-temporally resolved modeling platform that explicitly considers microscale aqueous-phase configuration and nutrient transport/diffusion and associated biophysical processes affecting individual microbial cell life history. We quantitatively explore the effects of the above microscale environmental processes on bio-physicochemical interactions affecting microbial growth, motility, surface attachment and aggregation, and shaping population interactions and functions. Simulation scenarios of microbial induced pollutant (e.g., roxarsone) biotransformation on various hydrated rough surfaces will also be present.

Flavonols Accumulate Asymmetrically and Affect Auxin Transport in Arabidopsis1[C][W][OA

PubMed Central

Kuhn, Benjamin M.; Geisler, Markus; Bigler, Laurent; Ringli, Christoph

2011-01-01

Flavonoids represent a class of secondary metabolites with diverse functions in plants including ultraviolet protection, pathogen defense, and interspecies communication. They are also known as modulators of signaling processes in plant and animal systems and therefore are considered to have beneficial effects as nutraceuticals. The rol1-2 (for repressor of lrx1) mutation of Arabidopsis (Arabidopsis thaliana) induces aberrant accumulation of flavonols and a cell-growth phenotype in the shoot. The hyponastic cotyledons, aberrant shape of pavement cells, and deformed trichomes in rol1-2 mutants are suppressed by blocking flavonoid biosynthesis, suggesting that the altered flavonol accumulation in these plants induces the shoot phenotype. Indeed, the identification of several transparent testa, myb, and fls1 (for flavonol synthase1) alleles in a rol1-2 suppressor screen provides genetic evidence that flavonols interfere with shoot development in rol1-2 seedlings. The increased accumulation of auxin in rol1-2 seedlings appears to be caused by a flavonol-induced modification of auxin transport. Quantification of auxin export from mesophyll protoplasts revealed that naphthalene-1-acetic acid but not indole-3-acetic acid transport is affected by the rol1-2 mutation. Inhibition of flavonol biosynthesis in rol1-2 fls1-3 restores naphthalene-1-acetic acid transport to wild-type levels, indicating a very specific mode of action of flavonols on the auxin transport machinery. PMID:21502189

Sources and transformations of nitrate from streams draining varying land uses: Evidence from dual isotope analysis

USGS Publications Warehouse

Burns, Douglas A.; Boyer, E.W.; Elliott, E.M.; Kendall, C.

2009-01-01

Knowledge of key sources and biogeochemical processes that affect the transport of nitrate (NO3-) in streams can inform watershed management strategies for controlling downstream eutrophication. We applied dual isotope analysis of NO3- to determine the dominant sources and processes that affect NO3- concentrations in six stream/river watersheds of different land uses. Samples were collected monthly at a range of flow conditions for 15 mo during 2004-05 and analyzed for NO3- concentrations, ?? 15NNO3, and ??18ONO3. Samples from two forested watersheds indicated that NO3- derived from nitrification was dominant at baseflow. A watershed dominated by suburban land use had three ??18ONO3 values greater than +25???, indicating a large direct contribution of atmospheric NO 3- transported to the stream during some high flows. Two watersheds with large proportions of agricultural land use had many ??15NNO3 values greater than +9???, suggesting an animal waste source consistent with regional dairy farming practices. These data showed a linear seasonal pattern with a ??18O NO3:??15NNO3 of 1:2, consistent with seasonally varying denitrification that peaked in late summer to early fall with the warmest temperatures and lowest annual streamflow. The large range of ?? 15NNO3 values (10???) indicates that NO 3- supply was likely not limiting the rate of denitrification, consistent with ground water and/or in-stream denitrification. Mixing of two or more distinct sources may have affected the seasonal isotope patterns observed in these two agricultural streams. In a mixed land use watershed of large drainage area, none of the source and process patterns observed in the small streams were evident. These results emphasize that observations at watersheds of a few to a few hundred km2 may be necessary to adequately quantify the relative roles of various NO 3- transport and process patterns that contribute to streamflow in large basins. Copyright ?? 2009 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

78 FR 32296 - Second Allocation of Public Transportation Emergency Relief Funds in Response to Hurricane Sandy...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-29

... DEPARTMENT OF TRANSPORTATION Federal Transit Administration Second Allocation of Public... disaster that affects public transportation systems. The Disaster Relief Appropriations Act provides $10.9... projected total recovery costs for the four most severely affected public transportation systems, not...

Transport, anoxia and energy control on anaerobic respiration and methanogenesis in anoxic peat soils

NASA Astrophysics Data System (ADS)

Bonaiuti, Simona; Blodau, Christian; Knorr, Klaus-Holger

2017-04-01

In deep and permanently water saturated peat deposits, extremely low diffusive transport and concomitant build-up of metabolic end-products, i.e of dissolved inorganic carbon (DIC) and methane (CH4), have been found to slow-down anaerobic respiration and methanogenesis. Such accumulation of DIC and CH4 lowers the Gibbs free energy yield of terminal respiration and methanogenesis, which can inhibit the course of anaerobic metabolic processes. In particular, this affects terminal steps of the breakdown of organic carbon (C), such as methanogenesis, acetogenesis and fermentation processes, which occur near thermodynamic minimum energy thresholds. This effect is thus of critical importance for the long-term C sequestration, as the slow-down of decomposition ultimately regulates the long-term fate of C in deep peat deposits. The exact controls of this observed slow-down of organic matter mineralization are not yet fully understood. Moreover, altered patterns of water or gas transport due to predicted changes in climate may affect these controls in peat soils. Therefore, the aim of this study was to investigate how burial of peat leads to an inactivation of anaerobic decomposition and to investigate the effects of advective water transport and persistently anoxic conditions on anaerobic decomposition, temporal evolution of thermodynamic energy yields to methanogenesis and methanogenic pathways. To this end, we conducted a column experiment with homogenized, ombrotrophic peat over a period of 300 days at 20˚ C. We tested i) a control treatment under diffusive transport only, ii) an advective flow treatment with a flow of 10 mm d-1, and iv) an anoxic treatment to evaluate changes in decomposition in absence of oxygen in the unsaturated zone of the cores. A slow-down of anaerobic respiration and methanogenesis generally set in at larger depths after 150 days at CH4 concentrations of 0.6-0.9 mmol L-1 and DIC concentrations of 6-12 mmol L-1. This effect occurred at higher concentration levels and faster than previously observed. Advective water transport effectively extended the zone of methanogenesis down to 40 cm depth until inhibiting conditions were reached, although net turnover at greater depths was not affected. Strictly anoxic conditions in the unsaturated zone, where diffusive transport is high, had little effect on accelerating anaerobic decomposition. The slow-down of net production rates of CO2 and CH4 agreed well with the decline over time of Gibbs free energies available to methanogenesis, supporting a thermodynamic constraint on decomposition in deeper peat deposits. Keywords: Peatlands; Anaerobic decomposition; Methanogenesis; Production rates; Advection; Anoxia; Thermodynamic calculations.

Isoflavone Retention during Processing, Bioaccessibility, and Transport by Caco-2 Cells: Effects of Source and Amount of Fat in a Soy Soft Pretzel

PubMed Central

Simmons, Amber L.; Chitchumroonchokchai, Chureeporn; Vodovotz, Yael; Failla, Mark L.

2014-01-01

The impact of source and amount of lipid used to prepare a soy soft pretzel on the bioaccessibility and transport of isoflavones was investigated using the coupled in vitro digestion/Caco-2 human cell model. Pretzels were prepared without or with 2.9 or 6.0% exogenous lipid from either shortening, canola oil, ground almond, or ground hazelnut. The isoflavone backbone structure was stable during pretzel production, although there was partial conversion from malonyl and acetyl glucosides to simple glucosides and aglycones. Endogenous β-glucosidase activity in ground almond facilitated partial conversion of simple glucosides to aglycones during proofing, resulting in a slight decrease in bioaccessibility of isoflavones as compared with other sources of lipid. Amount and source of lipid did not affect bioaccessibility or uptake and metabolism of isoflavones by Caco-2 cells, although transport across the monolayer was greater with the lesser amount of shortening. These results suggest that the isoflavone structure, but not source or amount of lipid in a soy pretzel, may affect bioavailability of isoflavones. PMID:23167916

Economic Evaluation of a Hybrid Desalination System Combining Forward and Reverse Osmosis

PubMed Central

Choi, Yongjun; Cho, Hyeongrak; Shin, Yonghyun; Jang, Yongsun; Lee, Sangho

2015-01-01

This study seeks to evaluate the performance and economic feasibility of the forward osmosis (FO)–reverse osmosis (RO) hybrid process; to propose a guideline by which this hybrid process might be more price-competitive in the field. A solution-diffusion model modified with film theory was applied to analyze the effects of concentration polarization, water, and salt transport coefficient on flux, recovery, seawater concentration, and treated wastewater of the FO process of an FO-RO hybrid system. A simple cost model was applied to analyze the effects of flux; recovery of the FO process; energy; and membrane cost on the FO-RO hybrid process. The simulation results showed that the water transport coefficient and internal concentration polarization resistance are very important factors that affect performance in the FO process; however; the effect of the salt transport coefficient does not seem to be large. It was also found that the flux and recovery of the FO process, the FO membrane, and the electricity cost are very important factors that influence the water cost of an FO-RO hybrid system. This hybrid system can be price-competitive with RO systems when its recovery rate is very high, the flux and the membrane cost of the FO are similar to those of the RO, and the electricity cost is expensive. The most important thing in commercializing the FO process is enhancing performance (e.g.; flux and the recovery of FO membranes). PMID:26729176

Comparative study of transport processes of nitrogen, phosphorus, and herbicides to streams in five agricultural basins, USA

USGS Publications Warehouse

Domagalski, Joseph L.; Ator, S.; Coupe, R.; McCarthy, K.; Lampe, D.; Sandstrom, M.; Baker, N.

2008-01-01

Agricultural chemical transport to surface water and the linkage to other hydrological compartments, principally ground water, was investigated at five watersheds in semiarid to humid climatic settings. Chemical transport was affected by storm water runoff, soil drainage, irrigation, and how streams were linked to shallow ground water systems. Irrigation practices and timing of chemical use greatly affected nutrient and pesticide transport in the semiarid basins. Irrigation with imported water tended to increase ground water and chemical transport, whereas the use of locally pumped irrigation water may eliminate connections between streams and ground water, resulting in lower annual loads. Drainage pathways in humid environments are important because the loads may be transported in tile drains, or through varying combinations of ground water discharge, and overland flow. In most cases, overland flow contributed the greatest loads, but a significant portion of the annual load of nitrate and some pesticide degradates can be transported under base-flow conditions. The highest basin yields for nitrate were measured in a semiarid irrigated system that used imported water and in a stream dominated by tile drainage in a humid environment. Pesticide loads, as a percent of actual use (LAPU), showed the effects of climate and geohydrologic conditions. The LAPU values in the semiarid study basin in Washington were generally low because most of the load was transported in ground water discharge to the stream. When herbicides are applied during the rainy season in a semiarid setting, such as simazine in the California basin, LAPU values are similar to those in the Midwest basins. Copyright ?? 2008 by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America. All rights reserved.

ESM of ionic and electrochemical phenomena on the nanoscale

DOE PAGES

Kalinin, Sergei V.; Kumar, Amit; Balke, Nina; ...

2011-01-01

Operation of energy storage and conversion devices is ultimately controlled by series of intertwined ionic and electronic transport processes and electrochemical reactions at surfaces and interfaces, strongly mediated by strain and mechanical processes. In a typical fuel cell, these include chemical species transport in porous cathode and anode materials, gas-solid electrochemical reactions at grains and triple-phase boundaries (TPBs), ionic and electronic flows in multicomponent electrodes, and chemical and electronic potential drops at internal interfaces in electrodes and electrolytes. Furthermore, all these phenomena are sensitively affected by the microstructure of materials from device level to the atomic scales. Similar spectrum ofmore » length scales and phenomena underpin operation of other energy systems including primary and secondary batteries, as well as hybrid systems such flow and metal-air/water batteries.« less

Climate change and watershed mercury export in a Coastal Plain watershed

Treesearch

Heather Golden; Christopher D. Knightes; Paul A. Conrads; Toby D. Feaster; Gary M. Davis; Stephen T. Benedict; Paul M. Bradley

2016-01-01

Future changes in climatic conditions may affect variations in watershed processes (e.g., hydrological, biogeochemical) and surface water quality across a wide range of physiographic provinces, ecosystems, and spatial scales. How such climatic shifts will impact watershed mercury (Hg) dynamics and hydrologically-driven Hg transport is a significant concern.

Pathogen transport in groundwater systems: contrasts with traditional solute transport

NASA Astrophysics Data System (ADS)

Hunt, Randall J.; Johnson, William P.

2017-06-01

Water quality affects many aspects of water availability, from precluding use to societal perceptions of fit-for-purpose. Pathogen source and transport processes are drivers of water quality because they have been responsible for numerous outbreaks resulting in large economic losses due to illness and, in some cases, loss of life. Outbreaks result from very small exposure (e.g., less than 20 viruses) from very strong sources (e.g., trillions of viruses shed by a single infected individual). Thus, unlike solute contaminants, an acute exposure to a very small amount of contaminated water can cause immediate adverse health effects. Similarly, pathogens are larger than solutes. Thus, interactions with surfaces and settling become important even as processes important for solutes such as diffusion become less important. These differences are articulated in "Colloid Filtration Theory", a separate branch of pore-scale transport. Consequently, understanding pathogen processes requires changes in how groundwater systems are typically characterized, where the focus is on the leading edges of plumes and preferential flow paths, even if such features move only a very small fraction of the aquifer flow. Moreover, the relatively short survival times of pathogens in the subsurface require greater attention to very fast (<10 year) flow paths. By better understanding the differences between pathogen and solute transport mechanisms discussed here, a more encompassing view of water quality and source water protection is attained. With this more holistic view and theoretical understanding, better evaluations can be made regarding drinking water vulnerability and the relation between groundwater and human health.

Using a spatially-distributed hydrologic biogeochemistry model with a nitrogen transport module to study the spatial variation of carbon processes in a Critical Zone Observatory

DOE PAGES

Shi, Yuning; Eissenstat, David M.; He, Yuting; ...

2018-05-12

Terrestrial carbon processes are affected by soil moisture, soil temperature, nitrogen availability and solar radiation, among other factors. Most of the current ecosystem biogeochemistry models represent one point in space, and have limited characterization of hydrologic processes. Therefore these models can neither resolve the topographically driven spatial variability of water, energy, and nutrient, nor their effects on carbon processes. A spatially-distributed land surface hydrologic biogeochemistry model, Flux-PIHM-BGC, is developed by coupling the Biome-BGC model with a physically-based land surface hydrologic model, Flux-PIHM. In the coupled system, each Flux-PIHM model grid couples a 1-D Biome-BGC model. In addition, a topographic solarmore » radiation module and an advection-driven nitrogen transport module are added to represent the impact of topography on nutrient transport and solar energy distribution. Because Flux-PIHM is able to simulate lateral groundwater flow and represent the land surface heterogeneities caused by topography, Flux-PIHM-BGC is capable of simulating the complex interaction among water, energy, nutrient, and carbon in time and space. The Flux-PIHM-BGC model is tested at the Susquehanna/Shale Hills Critical Zone Observatory. Model results show that distributions of carbon and nitrogen stocks and fluxes are strongly affected by topography and landscape position, and tree growth is nitrogen limited. The predicted aboveground and soil carbon distributions generally agree with the macro patterns observed. Although the model underestimates the spatial variation, the predicted watershed average values are close to the observations. Lastly, the coupled Flux-PIHM-BGC model provides an important tool to study spatial variations in terrestrial carbon and nitrogen processes and their interactions with environmental factors, and to predict the spatial structure of the responses of ecosystems to climate change.« less

Using a spatially-distributed hydrologic biogeochemistry model with a nitrogen transport module to study the spatial variation of carbon processes in a Critical Zone Observatory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, Yuning; Eissenstat, David M.; He, Yuting

Terrestrial carbon processes are affected by soil moisture, soil temperature, nitrogen availability and solar radiation, among other factors. Most of the current ecosystem biogeochemistry models represent one point in space, and have limited characterization of hydrologic processes. Therefore these models can neither resolve the topographically driven spatial variability of water, energy, and nutrient, nor their effects on carbon processes. A spatially-distributed land surface hydrologic biogeochemistry model, Flux-PIHM-BGC, is developed by coupling the Biome-BGC model with a physically-based land surface hydrologic model, Flux-PIHM. In the coupled system, each Flux-PIHM model grid couples a 1-D Biome-BGC model. In addition, a topographic solarmore » radiation module and an advection-driven nitrogen transport module are added to represent the impact of topography on nutrient transport and solar energy distribution. Because Flux-PIHM is able to simulate lateral groundwater flow and represent the land surface heterogeneities caused by topography, Flux-PIHM-BGC is capable of simulating the complex interaction among water, energy, nutrient, and carbon in time and space. The Flux-PIHM-BGC model is tested at the Susquehanna/Shale Hills Critical Zone Observatory. Model results show that distributions of carbon and nitrogen stocks and fluxes are strongly affected by topography and landscape position, and tree growth is nitrogen limited. The predicted aboveground and soil carbon distributions generally agree with the macro patterns observed. Although the model underestimates the spatial variation, the predicted watershed average values are close to the observations. Lastly, the coupled Flux-PIHM-BGC model provides an important tool to study spatial variations in terrestrial carbon and nitrogen processes and their interactions with environmental factors, and to predict the spatial structure of the responses of ecosystems to climate change.« less

Decadal-scale Evolution of Sediment Flux in the Aulne Estuary

NASA Astrophysics Data System (ADS)

Moskalski, S. M.; Deschamps, A.; Floc'h, F.; Verney, R.; Piete, H.; Fromant, G.; Delacourt, C.

2013-12-01

Estuarine sediment transport processes have the potential to evolve over time in response to alterations in various factors both internal and external to the estuary, such as sediment supply, river discharge, tidal forcing, or changes to bathymetry. Changes in sediment transport can affect many estuarine processes (e.g. budgets of sediment-adsorbed contaminants or nutrients) and ecosystem services, such as aquaculture, primary production and the need to dredge shipping channels. Most studies of decadal-scale changes in estuaries focus on geomorphology or bathymetry, or are performed using models calibrated by a limited set of observational studies. Because of the potential for sediment flux to both affect and be affected by geomorphology and bathymetry, observational studies oriented to sediment flux evolution are needed. This study focuses on two intensive observational studies separated by 30 years to quantify change in suspended sediment concentration (SSC) in the Aulne river, a shallow macrotidal estuary in western Brittany. Moored and vessel-mounted acoustic Doppler current profilers and YSIs were deployed over a three-week period in the winter of 2013 to examine hydrodynamic and sediment transport processes. The results of the modern study were compared to a 1977 investigation of currents, suspended sediment concentration, and erosion/deposition. The 1977 study found that SSC during spring tide and average river discharge was less than 30 mg/L near the mouth and above 300 mg/L landward, with near-bottom concentrations in the turbidity maximum zone occasionally greater than 1000 mg/L. SSC was highest during low tide and remained elevated throughout, in the upstream part of the estuary. Sediment deposition was stronger after flood tide due to a longer slack period, which implies landward sediment transport in the estuary. In the 2013 study, near-bottom SSC during spring tide and average river discharge was also highest during low tide, but SSC was above 1000 mg/L for a longer duration than in 1977 and SSC decreased during low tide slack before increasing again during maximum flooding velocity. Despite strong similarities in SSC, suspended sediment fluxes near the turbidity maximum zone were stronger in the seaward direction in 2013, due to stronger and longer-duration ebbing velocities. Furthermore, fluxes were higher at the upstream observational site and lower near the mouth, indicating a high likelihood of sediment deposition in the lower estuary. The results of this study indicate that decadal-scale changes in observed sediment transport in the Aulne estuary are significant, but this conclusion will be discussed by analyzing discrepancies between data sources and quality between 1977 and 2013.

Transportation into narrative worlds: implications for entertainment media influences on tobacco use.

PubMed

Green, Melanie C; Clark, Jenna L

2013-03-01

A growing body of research suggests that smoking portrayals in movies influence adolescent tobacco use. However, the mechanism for this influence remains unclear. The aim of this paper is to provide an overview of research on narrative transportation theory, particularly as applied to movies and smoking. We propose that this theory can provide a valuable framework for guiding research on the role of entertainment media in smoking and other addictive behaviors. We review empirical work on transportation theory and highlight the psychological mechanisms underlying transportation effects. 'Transportation into narrative worlds' refers to cognitive, emotional and imagery engagement into a narrative (including movies and entertainment media). We link this work with research on the effects of movie smoking. Research suggests that individuals who are more highly transported into narratives show greater attitude, belief and behavior change. Transportation effects work through reducing counterarguing, creating connections (identification and liking) with characters and increasing perceptions of realism and emotional involvement. We propose several future directions and research challenges for applying a transportation framework to the issue of entertainment media effects on smoking and tobacco disparities. Understanding factors contributing to transportation may provide a more nuanced view of who will be affected by movie smoking, and understanding the psychological processes underlying narrative persuasion may guide intervention efforts. Narrative transportation theory suggests that individuals' cognitive, emotional and imagery immersion in a narrative is a key mechanism of attitude, belief and behavior change. This theory provides a potentially generative and psychologically grounded framework for increasing knowledge about the boundary conditions and processes underlying the effects of entertainment media on tobacco use. © 2012 The Authors, Addiction © 2012 Society for the Study of Addiction.

Impact of capillary flow hydrodynamics on carrier-mediated transport of opioid derivatives at the blood-brain barrier, based on pH-dependent Michaelis-Menten and Crone-Renkin analyses.

PubMed

Yusof, Siti R; Abbott, N Joan; Avdeef, Alex

2017-08-30

Most studies of blood-brain barrier (BBB) permeability and transport are conducted at a single pH, but more detailed information can be revealed by using multiple pH values. A pH-dependent biophysical model was applied to the mechanistic analysis of published pH-dependent BBB luminal uptake data from three opioid derivatives in rat: pentazocine (Suzuki et al., 2002a, 2002b), naloxone (Suzuki et al., 2010a), and oxycodone (Okura et al., 2008). Two types of data were processed: in situ brain perfusion (ISBP) and brain uptake index (BUI). The published perfusion data were converted to apparent luminal permeability values, P app , and analyzed by the pCEL-X program (Yusof et al., 2014), using the pH-dependent Crone-Renkin equation (pH-CRE) to determine the impact of cerebrovascular flow on the Michaelis-Menten transport parameters (Avdeef and Sun, 2011). For oxycodone, the ISBP data had been measured at pH7.4 and 8.4. The present analysis indicates a 7-fold lower value of the cerebrovascular flow velocity, F pf , than that expected in the original study. From the pyrilamine-inhibited data, the flow-corrected passive intrinsic permeability value was determined to be P 0 =398×10 -6 cm·s -1 . The uptake data indicate that the neutral form of oxycodone is affected by a transporter at pH8.4. The extent of the cation uptake was less certain from the available data. For pentazocine, the brain uptake by the BUI method had been measured at pH5.5, 6.5, and 7.4, in a concentration range 0.1-40mM. Under similar conditions, ISBP data were also available. The pH-CRE determined values of F pf from both methods were nearly the same, and were smaller than the expected value in the original publication. The transport of the cationic pentazocine was not fully saturated at pH5.5 at 40mM. The transport of the neutral species at pH7.4 appeared to reach saturation at 40mM pentazocine concentration, but not at 12mM. In the case of naloxone, a pH-dependent Michaelis-Menten equation (pH-MME) analysis of the data indicated a smooth sigmoidal transition from a higher capacity uptake process affecting cationic naloxone (pH5.0-7.0) to a lower capacity uptake process affecting the neutral drug (pH8.0-8.5), with cross-over point near pH7.4. Evidently, measurements at multiple pH values can reveal important information about both cerebrovascular flow and BBB transport kinetics. Copyright © 2017 Elsevier B.V. All rights reserved.

Monitoring suspended sediment transport in an ice-affected river using acoustic Doppler current profilers

NASA Astrophysics Data System (ADS)

Moore, S. A.; Ghareh Aghaji Zare, S.; Rennie, C. D.; Ahmari, H.; Seidou, O.

2013-12-01

Quantifying sediment budgets and understanding the processes which control fluvial sediment transport is paramount to monitoring river geomorphology and ecological habitat. In regions that are subject to freezing there is the added complexity of ice. River ice processes impact flow distribution, water stage and sediment transport. Ice processes typically have the largest impact on sediment transport and channel morphodynamics when ice jams occur during ice cover formation and breakup. Ice jams may restrict flow and cause local acceleration when released. Additionally, ice can mechanically scour river bed and banks. Under-ice sediment transport measurements are lacking due to obvious safety and logistical reasons, in addition to a lack of adequate measurement techniques. Since some rivers can be covered in ice during six months of the year, the lack of data in winter months leads to large uncertainty in annual sediment load calculations. To address this problem, acoustic profilers are being used to monitor flow velocity, suspended sediment and ice processes in the Lower Nelson River, Manitoba, Canada. Acoustic profilers are ideal for under-ice sediment flux measurements since they can be operated autonomously and continuously, they do not disturb the flow in the zone of measurement and acoustic backscatter can be related to sediment size and concentration. In March 2012 two upward-facing profilers (1200 kHz acoustic Doppler current profiler, 546 KHz acoustic backscatter profiler) were installed through a hole in the ice on the Nelson River, 50 km downstream of the Limestone Generating Station. Data were recorded for four months, including both stable cover and breakup periods. This paper presents suspended sediment fluxes calculated from the acoustic measurements. Velocity data were used to infer the vertical distribution of sediment sizes and concentrations; this information was then used in the interpretation of the backscattered intensity data. It was found that the maximum concentration observed during breakup was more than an order of magnitude larger than the typical values observed under stable ice cover (>300 mg/L, versus 5 - 15 mg/L). This result is consistent with the few historic studies of river ice breakup in which water samples were collected. This study shows that acoustic profilers can be used to monitor suspended sediment fluxes under ice, ultimately reducing the uncertainty in sediment budget computations for ice-affected rivers.

Sorafenib metabolism, transport, and enterohepatic recycling: physiologically based modeling and simulation in mice.

PubMed

Edginton, Andrea N; Zimmerman, Eric I; Vasilyeva, Aksana; Baker, Sharyn D; Panetta, John C

2016-05-01

This study used uncertainty and sensitivity analysis to evaluate a physiologically based pharmacokinetic (PBPK) model of the complex mechanisms of sorafenib and its two main metabolites, sorafenib glucuronide and sorafenib N-oxide in mice. A PBPK model for sorafenib and its two main metabolites was developed to explain disposition in mice. It included relevant influx (Oatp) and efflux (Abcc2 and Abcc3) transporters, hepatic metabolic enzymes (CYP3A4 and UGT1A9), and intestinal β-glucuronidase. Parameterization of drug-specific processes was based on in vitro, ex vivo, and in silico data along with plasma and liver pharmacokinetic data from single and multiple transporter knockout mice. Uncertainty analysis demonstrated that the model structure and parameter values could explain the observed variability in the pharmacokinetic data. Global sensitivity analysis demonstrated the global effects of metabolizing enzymes on sorafenib and metabolite disposition and the local effects of transporters on their respective substrate exposures. In addition, through hypothesis testing, the model supported that the influx transporter Oatp is a weak substrate for sorafenib and a strong substrate for sorafenib glucuronide and that the efflux transporter Abcc2 is not the only transporter affected in the Abcc2 knockout mouse. Translation of the mouse model to humans for the purpose of explaining exceptionally high human pharmacokinetic variability and its relationship with exposure-dependent dose-limiting toxicities will require delineation of the importance of these processes on disposition.

Technology assessment of future intercity passenger transporation systems. Volume 2: Identification of issues affecting intercity transportation

NASA Technical Reports Server (NTRS)

1976-01-01

Papers on major issues and trends that affect the future of intercity transportation are presented. Specific areas covered include: political, social, technological, institutional, and economic mechanisms, the workings of which determine how future intercity transporation technologies will evolve and be put into service; the major issues of intercity transportation from the point of view of reform, including candidate transporation technologies; and technical analysis of trends affecting the evolution of intercity transportation technologies.

Model based verification and prognosis of acidification and sulphate releasing processes downstream of a former sewage field in Berlin (Germany).

PubMed

Horner, Christoph; Engelmann, Frank; Nützmann, Gunnar

2009-04-15

An ammonium contamination plume originating from sewage field management practices over several decades is affecting the water quality at the well fields of the Friedrichshagen waterworks in Berlin, Germany. Because hydraulic measures were unsuccessful due to the fixation of ammonium on the aquifer matrix by cation exchange, an in situ nitrification measure by injection of oxygen gas was chosen to protect the extraction wells. In order to assess the hydro chemical processes accompanying this in situ measure, reactive transport modelling was performed. The relevant processes are the dissolution of oxygen gas and the nitrification of ammonium which initiate secondary geochemical processes like sulphate release, acidification and hardening. The reactive transport modelling began with the deduction of a reaction network, followed by the mathematical formulation and incorporation of reactive terms into a reactive transport solver. Two model versions were set up: (1) a simplified large scale model to evaluate the long-term reaction zoning to be expected due to permanent oxygen gas injection, and (2) a verification of the monitored hydrochemistry during a first field test performed near the contamination source. The results of reactive transport modelling demonstrate that in situ injection of oxygen gas will be effective in reducing the ammonium load from the well fields, and that acidification processes near the production wells can be minimized. Finally, a line of gas injection wells extending over the whole width of the ammonium contamination plume will be constructed to protect the well fields from further ammonium load.

The influence of oxygen additions on argon-shielded gas metal arc welding processes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Joensson, P.G.; Murphy, A.B.; Szekely, J.

1995-02-01

It has been observed experimentally that small additions of oxygen to the argon shielding gas affect the general operation of GMAW processes. By theoretically modeling the arc column, it is shown that the addition of 2 to 5% oxygen to argon has an insignificant effect on the arc characteristics. This corresponds to the minor changes in the thermophysical transport and thermodynamic properties caused by the oxygen addition. Therefore, it is concluded that the addition of oxygen to the argon shielding gas mainly affects the anode and the cathode regions. From the literature, it was found that the formation of oxidesmore » initiates arcing at the cathode and decreases the movement of the cathode spots. These oxides can also improve the wetting conditions at the workpiece and the electrode. Finally, oxygen is found to affect the surface tension gradient and thereby the convective flow of liquid metal in the weld pool.« less

The Barrier Within: Endothelial Transport of Hormones

PubMed Central

Kolka, Cathryn M.; Bergman, Richard N.

2015-01-01

Hormones are involved in a plethora of processes including development and growth, metabolism, mood, and immune responses. These essential functions are dependent on the ability of the hormone to access its target tissue. In the case of endocrine hormones that are transported through the blood, this often means that the endothelium must be crossed. Many studies have shown that the concentrations of hormones and nutrients in blood can be very different from those surrounding the cells on the tissue side of the blood vessel endothelium, suggesting that transport across this barrier can be rate limiting for hormone action. This transport can be regulated by altering the surface area of the blood vessel available for diffusion through to the underlying tissue or by the permeability of the endothelium. Many hormones are known to directly or indirectly affect the endothelial barrier, thus affecting their own distribution to their target tissues. Dysfunction of the endothelial barrier is found in many diseases, particularly those associated with the metabolic syndrome. The interrelatedness of hormones may help to explain why the cluster of diseases in the metabolic syndrome occur together so frequently and suggests that treating the endothelium may ameliorate defects in more than one disease. Here, we review the structure and function of the endothelium, its contribution to the function of hormones, and its involvement in disease. PMID:22875454

The barrier within: endothelial transport of hormones.

PubMed

Kolka, Cathryn M; Bergman, Richard N

2012-08-01

Hormones are involved in a plethora of processes including development and growth, metabolism, mood, and immune responses. These essential functions are dependent on the ability of the hormone to access its target tissue. In the case of endocrine hormones that are transported through the blood, this often means that the endothelium must be crossed. Many studies have shown that the concentrations of hormones and nutrients in blood can be very different from those surrounding the cells on the tissue side of the blood vessel endothelium, suggesting that transport across this barrier can be rate limiting for hormone action. This transport can be regulated by altering the surface area of the blood vessel available for diffusion through to the underlying tissue or by the permeability of the endothelium. Many hormones are known to directly or indirectly affect the endothelial barrier, thus affecting their own distribution to their target tissues. Dysfunction of the endothelial barrier is found in many diseases, particularly those associated with the metabolic syndrome. The interrelatedness of hormones may help to explain why the cluster of diseases in the metabolic syndrome occur together so frequently and suggests that treating the endothelium may ameliorate defects in more than one disease. Here, we review the structure and function of the endothelium, its contribution to the function of hormones, and its involvement in disease.

Modeling Nitrogen Fate and Transport at the Sediment-Water ...

EPA Pesticide Factsheets

Diffusive mass transfer at media interfaces exerts control on the fate and transport of pollutants originating from agricultural and urban landscapes and affects the con-ditions of water bodies. Diffusion is essentially a physical process affecting the distribution and fate of various environmental pollutants such as nutrients, pesticides, metals, PCBs, PAHs, etc. Environmental problems caused by excessive use of agricultural chemicals (e.g., pesticides and fertilizers) and improper discharge of industrial waste and fuel leaks are all influenced by the diffusive nature of pollutants in the environment. Eutrophication is one such environmental problem where the sediment-water interface exerts a significant physical and geochemical control on the eutrophic condition of the stressed water body. Exposure of streams and lakes to contaminated sediment is another common environmental problem whereby transport of the contaminant (PCBs, PAHs, and other organic contaminants) across the sediment water can increase the risk for exposure to the chemicals and pose a significant health hazard to aquatic life and human beings. This chapter presents analytical and numerical models describing fate and transport phenomena at the sediment-water interface in freshwater ecosystems, with the primary focus on nitrogen cycling and the applicability of the models to real-world environmental problems and challenges faced in their applications. The first model deals with nitrogen cycling

The Effect of Dynamic Evaporation Rates on the Mobility of Pharmaceuticals in Unsaturated Environments

NASA Astrophysics Data System (ADS)

Normile, H.; Papelis, C.; Kibbey, T. C. G.

2015-12-01

The focus of this work was on investigating how dynamic rates of evaporation affect the fate and transport of pharmaceutical compounds in unsaturated porous media. The environmental processes of saturation and evaporation control local concentrations of contaminants in pore water of porous media. Specifically, the rate of evaporation can affect the identity and extent of solid formation of a pharmaceutical compound. A range of experiments with different evaporation rates were conducted on sand columns saturated with a solution of ciprofloxacin, a fluoroquinolone antibiotic. Experiments were designed to simulate increased and decreased pore-water concentrations of a compound due to evaporation and resaturation, respectively. Results suggest that varied rates of evaporation cause differences in compound adsorption behavior. This result has significant implications for understanding fate and transport within the unsaturated zone. Preliminary models exploring the impact on contaminant mobility are discussed.

The influence of sediment transport rate on the development of structure in gravel bed rivers

NASA Astrophysics Data System (ADS)

Ockelford, Annie; Rice, Steve; Powell, Mark; Reid, Ian; Nguyen, Thao; Tate, Nick; Wood, Jo

2013-04-01

Although adjustments of surface grain size are known to be strongly influenced by sediment transport rate little work has systematically explored how different transport rates can affect the development of surface structure in gravel bed rivers. Specifically, it has been well established that the transport of mixed sized sediments leads to the development of a coarser surface or armour layer which occurs over larger areas of the gravel bed. Armour layer development is known to moderate overall sediment transport rate as well as being extremely sensitive to changes in applied shear stress. However, during this armouring process a bed is created where, smaller gain scale changes, to the bed surface are also apparent such as the development of pebble clusters and imbricate structures. Although these smaller scale changes affect the overall surface grain size distribution very little their presence has the ability to significantly increase the surface stability and hence alter overall sediment transport rates. Consequently, the interplay between the moderation of transport rate as a function of surface coarsening at a larger scale and moderation of transport rate as a function of the development of structure on the bed surface at the smaller scale is complicated and warrants further investigation. During experiments a unimodal grain size distribution (σg = 1.30, D50 = 8.8mm) was exposed to 3 different levels of constant discharge that produced sediment transport conditions ranging from marginal transport to conditions approaching full mobility of all size fractions. Sediment was re-circulated during the experiments surface grain size distribution bed load and fractional transport rates were measured at a high temporal resolution such that the time evolution of the beds could be fully described. Discussion concentrates on analysing the effects of the evolving bed condition sediment transport rate (capacity) and transported grain size (competence). The outcome of this research is pertinent to developing new methods of linking the development of bed surface organisation with near bed flow characteristics and bed load transport in gravel bed rivers. Keywords: Graded, Sediment, Structure

Effect of small scale transport processes on phytoplankton distribution in coastal seas.

PubMed

Hernández-Carrasco, Ismael; Orfila, Alejandro; Rossi, Vincent; Garçon, Veronique

2018-06-05

Coastal ocean ecosystems are major contributors to the global biogeochemical cycles and biological productivity. Physical factors induced by the turbulent flow play a crucial role in regulating marine ecosystems. However, while large-scale open-ocean dynamics is well described by geostrophy, the role of multiscale transport processes in coastal regions is still poorly understood due to the lack of continuous high-resolution observations. Here, the influence of small-scale dynamics (O(3.5-25) km, i.e. spanning upper submesoscale and mesoscale processes) on surface phytoplankton derived from satellite chlorophyll-a (Chl-a) is studied using Lagrangian metrics computed from High-Frequency Radar currents. The combination of complementary Lagrangian diagnostics, including the Lagrangian divergence along fluid trajectories, provides an improved description of the 3D flow geometry which facilitates the interpretation of two non-exclusive physical mechanisms affecting phytoplankton dynamics and patchiness. Attracting small-scale fronts, unveiled by backwards Lagrangian Coherent Structures, are associated to negative divergence where particles and Chl-a standing stocks cluster. Filaments of positive divergence, representing large accumulated upward vertical velocities and suggesting accrued injection of subsurface nutrients, match areas with large Chl-a concentrations. Our findings demonstrate that an accurate characterization of small-scale transport processes is necessary to comprehend bio-physical interactions in coastal seas.

Large wood recruitment and redistribution in headwater streams in the southern Oregon Coast Range, U.S.A

USGS Publications Warehouse

May, Christine L.; Gresswell, Robert E.

2003-01-01

Large wood recruitment and redistribution mechanisms were investigated in a 3.9 km2 basin with an old-growth Pseudotsuga menziesii (Mirb.) Franco and Tsuga heterophylla (Raf.) Sarg. forest, located in the southern Coast Range of Oregon. Stream size and topographic setting strongly influenced processes that delivered wood to the channel network. In small colluvial channels draining steep hillslopes, processes associated with slope instability dominated large wood recruitment. In the larger alluvial channel, windthrow was the dominant recruitment process from the local riparian area. Consequently, colluvial channels received wood from further upslope than the alluvial channel. Input and redistribution processes influenced piece location relative to the direction of flow and thus, affected the functional role of wood. Wood recruited directly from local hillslopes and riparian areas was typically positioned adjacent to the channel or spanned its full width, and trapped sediment and wood in transport. In contrast, wood that had been fluvially redistributed was commonly located in mid-channel positions and was associated with scouring of the streambed and banks. Debris flows were a unique mechanism for creating large accumulations of wood in small streams that lacked the capacity for abundant fluvial transport of wood, and for transporting wood that was longer than the bank-full width of the channel.

Double stratification effects in chemically reactive squeezed Sutterby fluid flow with thermal radiation and mixed convection

NASA Astrophysics Data System (ADS)

Ahmad, S.; Farooq, M.; Javed, M.; Anjum, Aisha

2018-03-01

A current analysis is carried out to study theoretically the mixed convection characteristics in squeezing flow of Sutterby fluid in squeezed channel. The constitutive equation of Sutterby model is utilized to characterize the rheology of squeezing phenomenon. Flow characteristics are explored with dual stratification. In flowing fluid which contains heat and mass transport, the first order chemical reaction and radiative heat flux affect the transport phenomenon. The systems of non-linear governing equations have been modulating which then solved by mean of convergent approach (Homotopy Analysis Method). The graphs are reported and illustrated for emerging parameters. Through graphical explanations, drag force, rate of heat and mass transport are conversed for different pertinent parameters. It is found that heat and mass transport rate decays with dominant double stratified parameters and chemical reaction parameter. The present two-dimensional examination is applicable in some of the engineering processes and industrial fluid mechanics.

Hygrothermal analysis of surface layers of historical masonry

NASA Astrophysics Data System (ADS)

Kočí, Václav; Maděra, Jiří; Keppert, Martin; Černý, Robert

2017-11-01

The paper deals with the hygrothermal analysis of surface layers of historical masonry. Solid brick provided with a traditional and two modified lime-based plasters is studied. The heat and moisture transport in the envelope is induced by an exposure of the wall from the exterior side to dynamic climatic conditions of Olomouc, Czech Republic. The transport processes are described using diffusion type of mathematical model based on experimentally determined material properties. The computational results indicate that hygric transport and accumulation properties of exterior plasters affect the hygrothermal performance of the underlying solid brick in a very significant way, being able to regulate the amount of transported moisture. The modified lime plasters are not found generally superior to the traditional lime plasters in that respect. Therefore, their suitability for historical masonry should be assessed case by case, with a particular attention to the climatic conditions and to the properties of the load bearing structure.

Transport of viruses through saturated and unsaturated columns packed with sand

USGS Publications Warehouse

Anders, R.; Chrysikopoulos, C.V.

2009-01-01

Laboratory-scale virus transport experiments were conducted in columns packed with sand under saturated and unsaturated conditions. The viruses employed were the male-specific RNA coliphage, MS2, and the Salmonella typhimurium phage, PRD1. The mathematical model developed by Sim and Chrysikopoulos (Water Resour Res 36:173-179, 2000) that accounts for processes responsible for removal of viruses during vertical transport in one-dimensional, unsaturated porous media was used to fit the data collected from the laboratory experiments. The liquid to liquid-solid and liquid to air-liquid interface mass transfer rate coefficients were shown to increase for both bacteriophage as saturation levels were reduced. The experimental results indicate that even for unfavorable attachment conditions within a sand column (e.g., phosphate-buffered saline solution; pH = 7.5; ionic strength = 2 mM), saturation levels can affect virus transport through porous media. ?? Springer Science+Business Media B.V. 2008.

Geographical Distribution and Sources of Nutrients in Atmospheric Aerosol Over the Pacific Ocean

NASA Astrophysics Data System (ADS)

Uematsu, M.

2016-12-01

The Pacific Ocean, the world's largest (occupying about 30% of the Earth's total surface area) has several distinguishing biogeochemical features. In the western Pacific, dust particles originating from arid and semi-arid regions in Asia and Australia are transported to the north and south, respectively. Biomass burning emissions from Southeast Asia are exported to the tropical Pacific, and anthropogenic substances flowing out of Asia and Eurasia spread both regionally and globally. Over high primary productive areas such as the subarctic North Pacific, the equatorial Pacific and the Southern Ocean, biogenic gasses are released to the atmosphere and transported to other areas. These processes may affect cloud and rainfall patterns, air quality, and the radiative balance of downwind regions. The deposition of atmospheric aerosols containing iron and other essential nutrients is important for biogeochemical cycles in the oceans because this source of nutrients helps sustain primary production and affects food-web structure; these effects in turn influence the chemical properties of marine atmosphere. From an atmospheric chemistry standpoint, sea-salt aerosols produced by strong winds and marine biogenic gases emitted from highly productive waters affect the physicochemical characteristics of marine aerosols. As phytoplankton populations are patchy and atmospheric processes sporadic, the interactions between atmospheric chemical constituents and marine biota vary for different regions as well as seasonally and over longer timescales. To address these and other emerging issues, and more generally to better understand the important biogeochemical processes and interactions occurring over the open oceans, more long-term recurrent research cruises with standardized atmospheric shipboard measurements will be needed in the future.

Sources and sinks of plastic debris in estuaries: A conceptual model integrating biological, physical and chemical distribution mechanisms.

PubMed

Vermeiren, Peter; Muñoz, Cynthia C; Ikejima, Kou

2016-12-15

Micro- and macroplastic accumulation threatens estuaries worldwide because of the often dense human populations, diverse plastic inputs and high potential for plastic degradation and storage in these ecosystems. Nonetheless, our understanding of plastic sources and sinks remains limited. We designed conceptual models of the local and estuary-wide transport of plastics. We identify processes affecting the position of plastics in the water column; processes related to the mixing of fresh and salt water; and processes resulting from the influences of wind, topography, and organism-plastic interactions. The models identify gaps in the spatial context of plastic-organisms interactions, the chemical behavior of plastics in estuaries, effects of wind on plastic suspension-deposition cycles, and the relative importance of processes affecting the position in the water column. When interpreted in the context of current understanding, sinks with high management potential can be identified. However, source-sink patterns vary among estuary types and with local scale processes. Copyright © 2016 Elsevier Ltd. All rights reserved.

Circulation exchange patterns in Sinclair Inlet, Washington

USGS Publications Warehouse

Noble, Marlene A.; Rosenberger, Kurt J.; Paulson, Anthony J.; Gartner, Anne L.

2013-01-01

In 1994, the U.S. Geological Survey (USGS), in cooperation with the U.S. Navy, deployed three sets of moorings in Sinclair Inlet, which is a relatively small embayment on the western side of Puget Sound (fig. 1). This inlet is home to the Puget Sound Naval Shipyard. One purpose of the measurement program was to determine the transport pathways and fate of contaminants known to be present in Sinclair Inlet. Extensive descriptions of the program and the resultant information about contaminant pathways have been reported in Gartner and others (1998). This report primarily focused on the bottom boundary layer and the potential for resuspension and transport of sediments on the seabed in Sinclair Inlet as a result of tides and waves. Recently (2013), interest in transport pathways for suspended and dissolved materials in Sinclair Inlet has been rekindled. In particular, the USGS scientists in Washington and California have been asked to reexamine the datasets collected in the earlier study to refine not only our understanding of transport pathways through the inlet, but to determine how those transport pathways are affected by subtidal currents, local wind stress, and fresh water inputs. Because the prior study focused on the bottom boundary layer and not the water column, a reanalysis of the datasets could increase our understanding of the dynamic forces that drive transport within and through the inlet. However, the early datasets are limited in scope and a comprehensive understanding of these transport processes may require more extensive datasets or the development of a detailed numerical model of transport processes for the inlet, or both.

From Pore to Core: Do Engineered Nanoparticles Violate Upscaling Assumptions? A Microtomographic Investigation

NASA Astrophysics Data System (ADS)

Molnar, I. L.; O'Carroll, D. M.; Gerhard, J.; Willson, C. S.

2014-12-01

The recent success in using Synchrotron X-ray Computed Microtomography (SXCMT) for the quantification of nanoparticle concentrations within real, three-dimensional pore networks [1] has opened up new opportunities for collecting experimental data of pore-scale flow and transport processes. One opportunity is coupling SXCMT with nanoparticle/soil transport experiments to provide unique insights into how pore-scale processes influence transport at larger scales. Understanding these processes is a key step in accurately upscaling micron-scale phenomena to the continuum-scale. Upscaling phenomena from the micron-scale to the continuum-scale typically involves the assumption that the pore space is well mixed. Using this 'well mixed assumption' it is implicitly assumed that the distribution of nanoparticles within the pore does not affect its retention by soil grains. This assumption enables the use of volume-averaged parameters in calculating transport and retention rates. However, in some scenarios, the well mixed assumption will likely be violated by processes such as deposition and diffusion. These processes can alter the distribution of the nanoparticles in the pore space and impact retention behaviour, leading to discrepancies between theoretical predictions and experimental observations. This work investigates the well mixed assumption by employing SXCMT to experimentally examine pore-scale mixing of silver nanoparticles during transport through sand packed columns. Silver nanoparticles were flushed through three different sands to examine the impact of grain distribution and nanoparticle retention rates on mixing: uniform silica (low retention), well graded silica sand (low retention) and uniform iron oxide coated silica sand (high retention). The SXCMT data identified diffusion-limited retention as responsible for violations of the well mixed assumption. A mathematical description of the diffusion-limited retention process was created and compared to the experimental data at the pore and column-scale. The mathematical description accurately predicted trends observed within the SXCMT-datasets such as concentration gradients away from grain surfaces and also accurately predicted total retention of nanoparticles at the column scale. 1. ES&T 2014, 48, (2), 1114-1122.

Processes affecting the transport of Cryptosporidium parvum and other persistent pathogens in surface- and ground-waters

NASA Astrophysics Data System (ADS)

Packman, A. I.; Lau, B. L.; Harter, T.; Atwill, E. R.

2007-12-01

Waterborne diseases are transmitted through numerous environmental pathways, and their migration is strongly mediated by interaction with a wide variety of sediments and other natural materials during transport. Here we provide an overview of factors that affect the fate of persistent water-borne pathogens, focusing particularly on the zoonotic pathogen Cryptosporidium parvum as an example. While individual microbial cells are both small and have low specific gravity, suggesting that they should be highly mobile and remain suspended for long periods of time, attachment to a variety of background materials can substantially reduce pathogen mobility. Cryptosporidium oocysts readily associate with both inorganic and organic particles, resulting in the formation of aggregates. This process tends to increase the effective settling velocity of C. parvum in surface waters. Similarly, pathogens readily become associated with the solid matrix during transport in groundwater, resulting in removal by filtration. However, this process is reversible with C. parvum, resulting in a slow long-term release following the initial deposition. Pathogens also become associated with biofilms, which are surface-attached communities of microorganisms in a gelatinous matrix. The presence of biofilms increases the immobilization and retention of Cryptosporidium on solid surfaces. All of these processes influence pathogen transmission in surface waters such as rivers and water-supply canals. In these environments, pathogens can be immobilized by deposition into stable sediment beds by a combination of gravitational sedimentation and advection into pore waters followed by subsurface filtration. Association with background suspended matter tends to increase pathogen deposition by sedimentation, and the presence of benthic (sedimentary) biofilms also tends to increase pathogen retention. For pathogens that remain viable for long periods of time in natural aquatic systems, as is the case with Cryptosporidium and other cyst-and spore-forming organisms, then the sediments and sedimentary biofilms become an environmental reservoir of pathogens. Cysts retained in biofilms appear to be relatively difficult to resuspend, but slow, long-term biological release and high-flow events that mobilize streambed sediments both deliver pathogens into transport.

Pore-scale simulation of CO2-water-rock interactions

NASA Astrophysics Data System (ADS)

Deng, H.; Molins, S.; Steefel, C. I.; DePaolo, D. J.

2017-12-01

In Geologic Carbon Storage (GCS) systems, the migration of scCO2 versus CO2-acidifed brine ultimately determines the extent of mineral trapping and caprock integrity, i.e. the long-term storage efficiency and security. While continuum scale multiphase reactive transport models are valuable for large scale investigations, they typically (over-)simplify pore-scale dynamics and cannot capture local heterogeneities that may be important. Therefore, pore-scale models are needed in order to provide mechanistic understanding of how fine scale structural variations and heterogeneous processes influence the transport and geochemistry in the context of multiphase flow, and to inform parameterization of continuum scale modeling. In this study, we investigate the interplay of different processes at pore scale (e.g. diffusion, reactions, and multiphase flow) through the coupling of a well-developed multiphase flow simulator with a sophisticated reactive transport code. The objectives are to understand where brine displaced by scCO2 will reside in a rough pore/fracture, and how the CO2-water-rock interactions may affect the redistribution of different phases. In addition, the coupled code will provide a platform for model testing in pore-scale multiphase reactive transport problems.

The Effect of Voltage Charging on the Transport Properties of Gold Nanotube Membranes.

PubMed

Experton, Juliette; Martin, Charles R

2018-05-01

Porous membranes are used in chemical separations and in many electrochemical processes and devices. Research on the transport properties of a unique class of porous membranes that contain monodisperse gold nanotubes traversing the entire membrane thickness is reviewed here. These gold nanotubes can act as conduits for ionic and molecular transports through the membrane. Because the tubes are electronically conductive, they can be electrochemically charged by applying a voltage to the membrane. How this "voltage charging" affects the transport properties of gold nanotube membranes is the subject of this Review. Experiments showing that voltage charging can be used to reversibly switch the membrane between ideally cation- and anion-transporting states are reviewed. Voltage charging can also be used to enhance the ionic conductivity of gold nanotube membranes. Finally, voltage charging to accomplish electroporation of living bacteria as they pass through gold nanotube membranes is reviewed. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Physical effects at the cellular level under altered gravity conditions

NASA Technical Reports Server (NTRS)

Todd, Paul

1992-01-01

Several modifications of differentiated functions of animal cells cultivated in vitro have been reported when cultures have been exposed to increased or decreased inertial acceleration fields by centrifugation, clinorotation, and orbital space flight. Variables modified by clinorotation conditions include inertial acceleration, convection, hydrostatic pressure, sedimentation, and shear stress, which also affect transport processes in the extracellular chemical environment. Autocrine, paracrine and endocrine substances, to which cells are responsive via specific receptors, are usually transported in vitro (and possibly in certain embryos) by convection and in vivo by a circulatory system or ciliary action. Increased inertial acceleration increases convective flow, while microgravity nearly abolishes it. In the latter case the extracellular transport of macromolecules is governed by diffusion. By making certain assumptions it is possible to calculate the Peclet number, the ratio of convective transport to diffusive transport. Some, but not all, responses of cells in vitro to modified inertial environments could be manifestations of modified extracellular convective flow.

Switching Hole and Electron Transports of Molecules on Metal Oxides by Energy Level Alignment Tuning.

PubMed

Bao, Zhong-Min; Xu, Rui-Peng; Li, Chi; Xie, Zhong-Zhi; Zhao, Xin-Dong; Zhang, Yi-Bo; Li, Yan-Qing; Tang, Jian-Xin

2016-08-31

Charge transport at organic/inorganic hybrid contacts significantly affects the performance of organic optoelectronic devices because the unfavorable energy level offsets at these interfaces can hinder charge injection or extraction due to large barrier heights. Herein, we report a technologically relevant method to functionalize a traditional hole-transport layer of solution-processed nickel oxide (NiOx) with various interlayers. The photoemission spectroscopy measurements reveal the continuous tuning of the NiOx substrate work function ranging from 2.5 to 6.6 eV, enabling the alignment transition of energy levels between the Schottky-Mott limit and Fermi level pinning at the organic/composite NiOx interface. As a result, switching hole and electron transport for the active organic material on the composite NiOx layer is achieved due to the controlled carrier injection/extraction barriers. The experimental findings indicate that tuning the work function of metal oxides with optimum energy level offsets can facilitate the charge transport at organic/electrode contacts.

Transport mechanisms at the pulmonary mucosa: implications for drug delivery.

PubMed

Nickel, Sabrina; Clerkin, Caoimhe G; Selo, Mohammed Ali; Ehrhardt, Carsten

2016-01-01

Over the past years, a significant number of papers have substantiated earlier findings proposing a role for drug transporter proteins in pulmonary drug disposition. Whilst the majority of reports present data from in vitro models, a growing number of publications advance the field by introducing sophisticated ex vivo and in vivo techniques. In a few cases, evidence from clinical studies in human volunteers is complementing the picture. In this review, recent advances in pulmonary drug transporter research are critically evaluated. Transporter expression data in tissues and cell-based in vitro models is summarized and information on transport activity assessed. Novel techniques allowing for better quantification of transporter-related effects following pulmonary delivery are also described. Different tissue and cell populations of the lung have distinct transporter expression patterns. Whether these patterns are affected by disease, gender and smoking habits requires further clarification. Transporters have been found to have an impact on drug absorption processes, at least in vitro. Recent ex vivo experiments using isolated, perfused lung models, however, suggest that mainly efflux pumps have significant effects on absorption into the pulmonary circulation. Whether these rodent-based ex vivo models predict the human situation is basis for further research.

The Influence of Turbulent Coherent Structure on Suspended Sediment Transport

NASA Astrophysics Data System (ADS)

Huang, S. H.; Tsai, C.

2017-12-01

The anomalous diffusion of turbulent sedimentation has received more and more attention in recent years. With the advent of new instruments and technologies, researchers have found that sediment behavior may deviate from Fickian assumptions when particles are heavier. In particle-laden flow, bursting phenomena affects instantaneous local concentrations, and seems to carry suspended particles for a longer distance. Instead of the pure diffusion process in an analogy to Brownian motion, Levy flight which allows particles to move in response to bursting phenomena is suspected to be more suitable for describing particle movement in turbulence. And the fractional differential equation is a potential candidate to improve the concentration profile. However, stochastic modeling (the Differential Chapmen-Kolmogorov Equation) also provides an alternative mathematical framework to describe system transits between different states through diffusion/the jump processes. Within this framework, the stochastic particle tracking model linked with advection diffusion equation is a powerful tool to simulate particle locations in the flow field. By including the jump process to this model, a more comprehensive description for suspended sediment transport can be provided with a better physical insight. This study also shows the adaptability and expandability of the stochastic particle tracking model for suspended sediment transport modeling.

Effects of energy conservation on equilibrium properties of hot asymmetric nuclear matter

NASA Astrophysics Data System (ADS)

Zhang, Zhen; Ko, Che Ming

2018-01-01

Based on the relativistic Vlasov-Uehling-Uhlenbeck transport model, which includes relativistic scalar and vector potentials on baryons, we consider an N -Δ -π system in a box with periodic boundary conditions to study the effects of energy conservation in particle production and absorption processes on the equilibrium properties of the system. The density and temperature of the matter in the box are taken to be similar to the hot dense matter formed in heavy ion collisions at intermediate energies. We find that to maintain the equilibrium numbers of N ,Δ , and π , which depend on the mean-field potentials of N and Δ , we must include these potentials in the energy conservation condition that determines the momenta of outgoing particles after a scattering or decay process. We further find that the baryon scalar potentials mainly affect the Δ and pion equilibrium numbers, while the baryon vector potentials have considerable effect on the effective charged pion ratio at equilibrium. Our results thus indicate that it is essential to include in the transport model the effect of potentials in the energy conservation of a scattering or decay process, which is ignored in most transport models, for studying pion production in heavy ion collisions.

Analysis of suspended solids transport processes in primary settling tanks.

PubMed

Patziger, Miklós; Kiss, Katalin

2015-01-01

The paper shows the results of a long-term research comprising FLUENT-based numerical modeling, in situ measurements and laboratory tests to analyze suspended solids (SS) transport processes in primary settling tanks (PSTs). The investigated PST was one of the rectangular horizontal flow PSTs at a large municipal wastewater treatment plant (WWTP) of a capacity of 500,000 population equivalent. Many middle-sized and large WWTPs are equipped with such PSTs. The numerical PST model was calibrated and validated based on the results of comprehensive in situ flow and SS concentration measurements from low (5 m/h) up to quite high surface overflow rates of 9.5 and 13.0 m/h and on settling and other laboratory tests. The calibrated and validated PST model was also successfully used for evaluation of some slight modifications of the inlet geometry (removing lamellas, installing a flocculation 'box', shifting the inlet into a 'bottom-near' or into a 'high' position), which largely affect PST behavior and performance. The investigations provided detailed insight into the flow and SS transport processes within the investigated PST, which strongly contributes to hydrodynamically driven design and upgrading of PSTs.

An overview of the PM10 pollution problem, in the Metropolitan Area of Athens, Greece. Assessment of controlling factors and potential impact of long range transport.

PubMed

Grivas, G; Chaloulakou, A; Kassomenos, P

2008-01-15

The present study analyzes PM(10) concentration data collected by the Greek air quality monitoring network at 8 sites over the Greater Athens Area, for the period of 2001-2004. The primary objectives were to assess the degree of compliance with the EU-legislated air quality standard for PM(10) and also provide an overall statistical examination of the factors controlling the seasonal and spatial variation of concentrations, over the wider urban agglomeration. Daily concentrations, averaged over the whole study period, ranged between 32.3 and 60.9 microg m(-3). The four-year average concentration of PM(10) at five sites exceeded the annual limit value of 40 microg m(-3), while most of the sites surpassed the allowed percentage of exceedances of the daily limit value (50 microg m(-3)), for each of the four years. The seasonal variation of PM(10) levels was not found to be uniform across the eight sites, with average cold-period concentrations being higher at four of them and warm period concentrations being significantly higher at three sites, which also displayed recurring annual variation of monthly concentrations. Concentration levels displayed moderate spatial heterogeneity. Nevertheless significant inter-site correlations were observed (ranging between 0.55 and 085). The determination of the spatial correlation levels relied mainly on site types rather than on inter-site distances. Monitoring sites were classified accordingly using cluster analysis in two groups presenting distinct spatiotemporal variation and affected by different particle formation processes. The group including urban sites was mainly affected by primary, combustion-related processes and especially vehicular traffic, as it was also deduced through the examination of the diurnal distribution of particulate levels and through factor analysis. On the contrary, suburban background sites seemed more affected by particle transport from more polluted neighboring areas and secondary particle formation through gaseous precursors, both processes aided from favoring meteorological conditions. The association of the PM(10) levels with backwards trajectories was also examined, in an attempt to account for the possible long range transport of particles in Athens. It was found that a notable part of area-wide episodic events could be attributed to trans-boundary transport of particles, with the origins of some severe dust outbreaks traced back to the Sahara desert and the Western Mediterranean.

Framework for developing hybrid process-driven, artificial neural network and regression models for salinity prediction in river systems

NASA Astrophysics Data System (ADS)

Hunter, Jason M.; Maier, Holger R.; Gibbs, Matthew S.; Foale, Eloise R.; Grosvenor, Naomi A.; Harders, Nathan P.; Kikuchi-Miller, Tahali C.

2018-05-01

Salinity modelling in river systems is complicated by a number of processes, including in-stream salt transport and various mechanisms of saline accession that vary dynamically as a function of water level and flow, often at different temporal scales. Traditionally, salinity models in rivers have either been process- or data-driven. The primary problem with process-based models is that in many instances, not all of the underlying processes are fully understood or able to be represented mathematically. There are also often insufficient historical data to support model development. The major limitation of data-driven models, such as artificial neural networks (ANNs) in comparison, is that they provide limited system understanding and are generally not able to be used to inform management decisions targeting specific processes, as different processes are generally modelled implicitly. In order to overcome these limitations, a generic framework for developing hybrid process and data-driven models of salinity in river systems is introduced and applied in this paper. As part of the approach, the most suitable sub-models are developed for each sub-process affecting salinity at the location of interest based on consideration of model purpose, the degree of process understanding and data availability, which are then combined to form the hybrid model. The approach is applied to a 46 km reach of the Murray River in South Australia, which is affected by high levels of salinity. In this reach, the major processes affecting salinity include in-stream salt transport, accession of saline groundwater along the length of the reach and the flushing of three waterbodies in the floodplain during overbank flows of various magnitudes. Based on trade-offs between the degree of process understanding and data availability, a process-driven model is developed for in-stream salt transport, an ANN model is used to model saline groundwater accession and three linear regression models are used to account for the flushing of the different floodplain storages. The resulting hybrid model performs very well on approximately 3 years of daily validation data, with a Nash-Sutcliffe efficiency (NSE) of 0.89 and a root mean squared error (RMSE) of 12.62 mg L-1 (over a range from approximately 50 to 250 mg L-1). Each component of the hybrid model results in noticeable improvements in model performance corresponding to the range of flows for which they are developed. The predictive performance of the hybrid model is significantly better than that of a benchmark process-driven model (NSE = -0.14, RMSE = 41.10 mg L-1, Gbench index = 0.90) and slightly better than that of a benchmark data-driven (ANN) model (NSE = 0.83, RMSE = 15.93 mg L-1, Gbench index = 0.36). Apart from improved predictive performance, the hybrid model also has advantages over the ANN benchmark model in terms of increased capacity for improving system understanding and greater ability to support management decisions.

Aeolian nutrient fluxes following wildfire in sagebrush steppe: Implications for soil carbon storage

USGS Publications Warehouse

Hasselquist, N.J.; Germino, M.J.; Sankey, J.B.; Ingram, L.J.; Glenn, N.F.

2011-01-01

Pulses of aeolian transport following fire can profoundly affect the biogeochemical cycling of nutrients in semi-arid and arid ecosystems. Our objective was to determine horizontal nutrient fluxes occurring in the saltation zone during an episodic pulse of aeolian transport that occurred following a wildfire in a semi-arid sagebrush steppe ecosystem in southern Idaho, USA. We also examined how temporal trends in nutrient fluxes were affected by changes in particle sizes of eroded mass as well as nutrient concentrations associated with different particle size classes. In the burned area, total carbon (C) and nitrogen (N) fluxes were as high as 235 g C m????'1 d????'1 and 19 g N m????'1 d????'1 during the first few months following fire, whereas C and N fluxes were negligible in an adjacent unburned area throughout the study. Temporal variation in C and N fluxes following fire was largely attributable to the redistribution of saltation-sized particles. Total N and organic C concentrations in the soil surface were significantly lower in the burned relative to the unburned area one year after fire. Our results show how an episodic pulse of aeolian transport following fire can affect the spatial distribution of soil C and N, which, in turn, can have important implications for soil C storage. These findings demonstrate how an ecological disturbance can exacerbate a geomorphic process and highlight the need for further research to better understand the role aeolian transport plays in the biogeochemical cycling of C and N in recently burned landscapes. ?? Author(s) 2011. CC Attribution 3.0 License.

Aeolian nutrient fluxes following wildfire in sagebrush steppe: Implications for soil carbon storage

USGS Publications Warehouse

Hasselquist, N.J.; Germino, M.J.; Sankey, J.B.; Ingram, L.J.; Glenn, N.F.

2011-01-01

Pulses of aeolian transport following fire can profoundly affect the biogeochemical cycling of nutrients in semi-arid and arid ecosystems. Our objective was to determine horizontal nutrient fluxes during an episodic pulse of aeolian transport that occurred following a wildfire in a semi-arid sagebrush steppe ecosystem in southern Idaho, USA. We also examined how temporal trends in nutrient fluxes were affected by changes in particle sizes of eroded mass as well as nutrient concentrations associated with different particle size classes. In the burned area, total carbon (C) and nitrogen (N) fluxes were as high as 235 g C m????'1 d????'1 and 19 g N m????'1 d????'1 during the first few months following fire, whereas C and N fluxes were negligible in an adjacent unburned area throughout the study. Temporal variation in C and N fluxes following fire was largely attributable to the redistribution of saltation-sized particles. Total N and organic C concentrations in the soil surface were significantly lower in the burned relative to the unburned area one year after fire. Our results show how an episodic pulse of aeolian transport following fire can affect the spatial distribution of soil C and N, which, in turn, can have important implications for soil C storage. These findings demonstrate how an ecological disturbance can exacerbate a geomorphic process and highlight the need for further research to better understand the role aeolian transport plays in the biogeochemical cycling of C and N in recently burned landscapes. ?? 2011 Author(s).

Modelling spatiotemporal distribution patterns of earthworms in order to indicate hydrological soil processes

NASA Astrophysics Data System (ADS)

Palm, Juliane; Klaus, Julian; van Schaik, Loes; Zehe, Erwin; Schröder, Boris

2010-05-01

Soils provide central ecosystem functions in recycling nutrients, detoxifying harmful chemicals as well as regulating microclimate and local hydrological processes. The internal regulation of these functions and therefore the development of healthy and fertile soils mainly depend on the functional diversity of plants and animals. Soil organisms drive essential processes such as litter decomposition, nutrient cycling, water dynamics, and soil structure formation. Disturbances by different soil management practices (e.g., soil tillage, fertilization, pesticide application) affect the distribution and abundance of soil organisms and hence influence regulating processes. The strong relationship between environmental conditions and soil organisms gives us the opportunity to link spatiotemporal distribution patterns of indicator species with the potential provision of essential soil processes on different scales. Earthworms are key organisms for soil function and affect, among other things, water dynamics and solute transport in soils. Through their burrowing activity, earthworms increase the number of macropores by building semi-permanent burrow systems. In the unsaturated zone, earthworm burrows act as preferential flow pathways and affect water infiltration, surface-, subsurface- and matrix flow as well as the transport of water and solutes into deeper soil layers. Thereby different ecological earthworm types have different importance. Deep burrowing anecic earthworm species (e.g., Lumbricus terrestris) affect the vertical flow and thus increase the risk of potential contamination of ground water with agrochemicals. In contrast, horizontal burrowing endogeic (e.g., Aporrectodea caliginosa) and epigeic species (e.g., Lumbricus rubellus) increase water conductivity and the diffuse distribution of water and solutes in the upper soil layers. The question which processes are more relevant is pivotal for soil management and risk assessment. Thus, finding relevant environmental predictors which explain the distribution and dynamics of different ecological earthworm types can help us to understand where or when these processes are relevant in the landscape. Therefore, we develop species distribution models which are a useful tool to predict spatiotemporal distributions of earthworm occurrence and abundance under changing environmental conditions. On field scale, geostatistical distribution maps have shown that the spatial distribution of earthworms depends on soil parameters such as food supply, soil moisture, bulk density but with different patterns for earthworm stages (adult, juvenile) and ecological types (anecic, endogeic, epigeic). On landscape scales, earthworm distribution seems to be strongly controlled by management/disturbance-related factors. Our study shows different modelling approaches for predicting distribution patterns of earthworms in the Weiherbach area, an agricultural site in Kraichtal (Baden-Württemberg, Germany). We carried out field studies on arable fields differing in soil management practices (conventional, conservational), soil properties (organic matter content, texture, soil moisture), and topography (slope, elevation) in order to identify predictors for earthworm occurrence, abundance and biomass. Our earthworm distribution models consider all ecological groups as well as different life stages, accounting for the fact that the activity of juveniles is sometimes different from those of adults. Within our BIOPORE-project it is our final goal to couple our distribution models with population dynamic models and a preferential flow model to an integrated ecohydrological model to analyse feedbacks between earthworm engineering and transport characteristics affecting the functioning of (agro-) ecosystems.

2007 Weather and Aeolian Sand-Transport Data from the Colorado River Corridor, Grand Canyon, Arizona

USGS Publications Warehouse

Draut, Amy E.; Andrews, Timothy; Fairley, Helen C.; Brown, Christopher R.

2009-01-01

Weather data constitute an integral part of ecosystem monitoring in the Colorado River corridor and are particularly valuable for understanding processes of landscape change that contribute to the stability of archeological sites. Data collected in 2007 are reported from nine weather stations in the Colorado River corridor through Grand Canyon, Ariz. The stations were deployed in February and March 2007 to measure wind speed and direction, rainfall, air temperature, relative humidity, and barometric pressure. Sand traps near each weather station collect windblown sand, from which daily aeolian sand-transport rates are calculated. The data reported here were collected as part of an ongoing study to test and evaluate methods for quantifying processes that affect the physical integrity of archeological sites along the river corridor; as such, these data can be used to identify rainfall events capable of causing gully incision and to predict likely transport pathways for aeolian sand, two landscape processes integral to the preservation of archeological sites. Weather data also have widespread applications to other studies of physical, cultural, and biological resources in Grand Canyon. Aeolian sand-transport data reported here, collected in the year before the March 2008 High-Flow Experiment (HFE) at Glen Canyon Dam, represent baseline data against which the effects of the 2008 HFE on windblown sand will be compared in future reports.

Drug Metabolism and Transport During Pregnancy: How Does Drug Disposition Change during Pregnancy and What Are the Mechanisms that Cause Such Changes?

PubMed Central

Thummel, Kenneth E.

2013-01-01

There is increasing evidence that pregnancy alters the function of drug-metabolizing enzymes and drug transporters in a gestational-stage and tissue-specific manner. In vivo probe studies have shown that the activity of several hepatic cytochrome P450 enzymes, such as CYP2D6 and CYP3A4, is increased during pregnancy, whereas the activity of others, such as CYP1A2, is decreased. The activity of some renal transporters, including organic cation transporter and P-glycoprotein, also appears to be increased during pregnancy. Although much has been learned, significant gaps still exist in our understanding of the spectrum of drug metabolism and transport genes affected, gestational age–dependent changes in the activity of encoded drug metabolizing and transporting processes, and the mechanisms of pregnancy-induced alterations. In this issue of Drug Metabolism and Disposition, a series of articles is presented that address the predictability, mechanisms, and magnitude of changes in drug metabolism and transport processes during pregnancy. The articles highlight state-of-the-art approaches to studying mechanisms of changes in drug disposition during pregnancy, and illustrate the use and integration of data from in vitro models, animal studies, and human clinical studies. The findings presented show the complex inter-relationships between multiple regulators of drug metabolism and transport genes, such as estrogens, progesterone, and growth hormone, and their effects on enzyme and transporter expression in different tissues. The studies provide the impetus for a mechanism- and evidence-based approach to optimally managing drug therapies during pregnancy and improving treatment outcomes. PMID:23328895

Extracellular nucleotides inhibit oxalate transport by human intestinal Caco-2-BBe cells through PKC-δ activation

PubMed Central

Amin, Ruhul; Sharma, Sapna; Ratakonda, Sireesha

2013-01-01

Nephrolithiasis remains a major health problem in Western countries. Seventy to 80% of kidney stones are composed of calcium oxalate, and small changes in urinary oxalate affect risk of kidney stone formation. Intestinal oxalate secretion mediated by the anion exchanger SLC26A6 plays an essential role in preventing hyperoxaluria and calcium oxalate nephrolithiasis, indicating that understanding the mechanisms regulating intestinal oxalate transport is critical for management of hyperoxaluria. Purinergic signaling modulates several intestinal processes through pathways including PKC activation, which we previously found to inhibit Slc26a6 activity in mouse duodenal tissue. We therefore examined whether purinergic stimulation with ATP and UTP affects oxalate transport by human intestinal Caco-2-BBe (C2) cells. We measured [14C]oxalate uptake in the presence of an outward Cl− gradient as an assay of Cl−/oxalate exchange activity, ≥50% of which is mediated by SLC26A6. We found that ATP and UTP significantly inhibited oxalate transport by C2 cells, an effect blocked by the PKC inhibitor Gö-6983. Utilizing pharmacological agonists and antagonists, as well as PKC-δ knockdown studies, we observed that ATP inhibits oxalate transport through the P2Y2 receptor, PLC, and PKC-δ. Biotinylation studies showed that ATP inhibits oxalate transport by lowering SLC26A6 surface expression. These findings are of potential relevance to pathophysiology of inflammatory bowel disease-associated hyperoxaluria, where supraphysiological levels of ATP/UTP are expected and overexpression of the P2Y2 receptor has been reported. We conclude that ATP and UTP inhibit oxalate transport by lowering SLC26A6 surface expression in C2 cells through signaling pathways including the P2Y2 purinergic receptor, PLC, and PKC-δ. PMID:23596171

Numerical analysis of field-scale transport of bromacil

NASA Astrophysics Data System (ADS)

Russo, David; Tauber-Yasur, Inbar; Laufer, Asher; Yaron, Bruno

Field-scale transport of bromacil (5-bromo-3- sec-butyl-6-methyluracil) was analyzed using two different model processes for local description of the transport. The first was the classical, one-region convection dispersion equation (CDE) model while the second was the two-region, mobile-immobile (MIM) model. The analyses were performed by means of detailed three-dimensional, numerical simulations of the flow and the transport [Russo, D., Zaidel, J. and Laufer, A., Numerical analysis of flow and transport in a three-dimensional partially saturated heterogeneous soil. Water Resour. Res., 1998, in press], employing local soil hydraulic properties parameters from field measurements and local adsorption/desorption coefficients and the first-order degradation rate coefficient from laboratory measurements. Results of the analyses suggest that for a given flow regime, mass exchange between the mobile and the immobile regions retards the bromacil degradation, considerably affects the distribution of the bromacil resident concentration, c, at relatively large travel times, slightly affects the spatial moments of the distribution of c, and increases the skewing of the bromacil breakthrough and the uncertainty in its prediction, compared with the case in which the soil contained only a single (mobile) region. Mean and standard deviation of the simulated concentration profiles at various elapsed times were compared with measurements from a field-scale transport experiment [Tauber-Yasur, I., Hadas, A., Russo, D. and Yaron, B., Leaching of terbuthylazine and bromacil through field soils. Water, Air Soil Poln., 1998, in press] conducted at the Bet Dagan site. Given the limitations of the present study (e.g. the lack of detailed field data on the spatial variability of the soil chemical properties) the main conclusion of the present study is that the field-scale transport of bromacil at the Bet Dagan site is better quantified with the MIM model than the CDE model.

The SPF27 Homologue Num1 Connects Splicing and Kinesin 1-Dependent Cytoplasmic Trafficking in Ustilago maydis

PubMed Central

Kellner, Nikola; Heimel, Kai; Obhof, Theresa; Finkernagel, Florian; Kämper, Jörg

2014-01-01

The conserved NineTeen protein complex (NTC) is an integral subunit of the spliceosome and required for intron removal during pre-mRNA splicing. The complex associates with the spliceosome and participates in the regulation of conformational changes of core spliceosomal components, stabilizing RNA-RNA- as well as RNA-protein interactions. In addition, the NTC is involved in cell cycle checkpoint control, response to DNA damage, as well as formation and export of mRNP-particles. We have identified the Num1 protein as the homologue of SPF27, one of NTC core components, in the basidiomycetous fungus Ustilago maydis. Num1 is required for polarized growth of the fungal hyphae, and, in line with the described NTC functions, the num1 mutation affects the cell cycle and cell division. The num1 deletion influences splicing in U. maydis on a global scale, as RNA-Seq analysis revealed increased intron retention rates. Surprisingly, we identified in a screen for Num1 interacting proteins not only NTC core components as Prp19 and Cef1, but several proteins with putative functions during vesicle-mediated transport processes. Among others, Num1 interacts with the motor protein Kin1 in the cytoplasm. Similar phenotypes with respect to filamentous and polar growth, vacuolar morphology, as well as the motility of early endosomes corroborate the genetic interaction between Num1 and Kin1. Our data implicate a previously unidentified connection between a component of the splicing machinery and cytoplasmic transport processes. As the num1 deletion also affects cytoplasmic mRNA transport, the protein may constitute a novel functional interconnection between the two disparate processes of splicing and trafficking. PMID:24391515

Ecological linkages between headwaters and downstream ecosystems: Transport of organic matter, invertebrates, and wood down headwater channels

USGS Publications Warehouse

Wipfli, M.S.; Richardson, J.S.; Naiman, R.J.

2007-01-01

Headwater streams make up a large proportion of the total length and watershed area of fluvial networks, and are partially characterized by the large volume of organic matter (large wood, detritus, and dissolved organic matter) and invertebrate inputs from the riparian forest, relative to stream size. Much of those inputs are exported to downstream reaches through time where they potentially subsidize river communities. The relative rates, timing, and conversion processes that carry inputs from small streams to downstream reaches are reasonably well quantified. For example, larger particles are converted to smaller particles, which are more easily exported. Also, dissolved organic matter and surface biofilms are converted to larger particles which can be more easily intercepted by consumers. However, the quality of these materials as it affects biological activity downstream is not well known, nor is the extent to which timing permits biological use of those particles. These ecological unknowns need to be resolved. Further, land uses may disrupt and diminish material transport to downstream reaches by removing sources (e.g., forest harvest), by affecting transport and decomposition processes (e.g., flow regulation, irrigation, changes in biotic communities), and by altering mechanisms of storage within headwaters (e.g., channelization). We present conceptual models of energy and nutrient fluxes that outline small stream processes and pathways important to downstream communities, and we identify informational gaps that, if filled, could significantly advance the understanding of linkages between headwater streams and larger rivers. The models, based on empirical evidence and best professional judgment, suggest that navigable waters are significantly influenced by headwater streams through hydrological and ecological connectivities, and land use can dramatically influence these natural connectivities, impacting downstream riverine ecosystems. ?? 2007 American Water Resources Association.

Present and future challenges of urban systems affected by seawater and its intrusion: the case of Venice, Italy

NASA Astrophysics Data System (ADS)

di Sipio, Eloisa; Zezza, Fulvio

2011-11-01

In lagoonal and marine environments, both historic monuments and recent buildings suffer from severe salt damage caused by sea flooding, sea-level rise and frequent storm events. Salt-water contamination of groundwater systems, a widespread phenomenon typical of coastal areas, can lead to a deterioration not only of the quality of fresh groundwater resources, but also of building materials in urban settlements. A general overview is given of the hydrogeological configuration of the subsoil of Venice (Italy), with particular reference to the shallow groundwater circulation. The relationship between the seawater in the subsoil and salt decay processes, due to salt crystallization, is highlighted. These processes affect civil constructions in Venice's historic center. Perched aquifers, influenced by tide variations and characterized by salt-water intrusion, favor the transport of salts within masonry walls through the action of rising damp. In fact, foundations, in direct contact with the aquifers, may become a preferential vehicle for the transportation of salt within buildings. Decay patterns of different building materials can be detected through non-destructive techniques, which can identify sea-salt damage and therefore assist in the preservation of cultural heritage in coastal areas.

Model-Based Analysis of the Role of Biological, Hydrological and Geochemical Factors Affecting Uranium Bioremediation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhao, Jiao; Scheibe, Timothy D.; Mahadevan, Radhakrishnan

2011-01-24

Uranium contamination is a serious concern at several sites motivating the development of novel treatment strategies such as the Geobacter-mediated reductive immobilization of uranium. However, this bioremediation strategy has not yet been optimized for the sustained uranium removal. While several reactive-transport models have been developed to represent Geobacter-mediated bioremediation of uranium, these models often lack the detailed quantitative description of the microbial process (e.g., biomass build-up in both groundwater and sediments, electron transport system, etc.) and the interaction between biogeochemical and hydrological process. In this study, a novel multi-scale model was developed by integrating our recent model on electron capacitancemore » of Geobacter (Zhao et al., 2010) with a comprehensive simulator of coupled fluid flow, hydrologic transport, heat transfer, and biogeochemical reactions. This mechanistic reactive-transport model accurately reproduces the experimental data for the bioremediation of uranium with acetate amendment. We subsequently performed global sensitivity analysis with the reactive-transport model in order to identify the main sources of prediction uncertainty caused by synergistic effects of biological, geochemical, and hydrological processes. The proposed approach successfully captured significant contributing factors across time and space, thereby improving the structure and parameterization of the comprehensive reactive-transport model. The global sensitivity analysis also provides a potentially useful tool to evaluate uranium bioremediation strategy. The simulations suggest that under difficult environments (e.g., highly contaminated with U(VI) at a high migration rate of solutes), the efficiency of uranium removal can be improved by adding Geobacter species to the contaminated site (bioaugmentation) in conjunction with the addition of electron donor (biostimulation). The simulations also highlight the interactive effect of initial cell concentration and flow rate on U(VI) reduction.« less

Use of microorganisms in enhanced oil recovery. First annual report, October 1, 1980-September 30, 1982

DOE Office of Scientific and Technical Information (OSTI.GOV)

McInerney, M.J.; Menzie, D.E.; Jenneman, G.E.

1983-09-01

Twenty-two isolates were obtained that produced bioemulsifiers or biopolymers when grown in a sucrose, 5% NaCl mineral salts medium at 50 C. Biopolymers were produced aerobically and anaerobically. Bacillus licheniformis, strain JF-2 cultures had the lowest surface tensions of the eleven bioemulsifer-producing isolates tested. Growth of strain JF-2 was not affected by NaCl concentrations up to 10%, pH values of 4.6 to 9.0, temperatures up to 50 C or the presence of crude oil. The surfactant produced by strain JF-2 was not affected by the pH, temperature, NaCl or calcium concentrations found in many oil reservoirs. These properties indicate thatmore » the surfactant produced by strain JF-2 has many properties suitable for enhanced oil recovery processes. The success of in situ microbial plugging process depends on the ability to transport the microbes throughout the reservoir, to transport the nutrients required for growth, and to selectively reduce the apparent permeability of the reservoir as a result of microbial growth and metabolism. Nutrients such as glucose, ammonia, nitrogen and phosphate were transported through Berea sandstone cores in amounts sufficient to support microbial growth. Viable bacterial cells in brine solution were transported through sandstone cores with permeabilities as low as 196 md. Continuous nutrient injection resulted in almost complete blockage of fluid flow while batch addition of nutrients resulted in permeability reductions of 60 to 80% of the initial value. Indigenous microbial populations accounted for 50 to 70% of these permeability reductions. Effluent of cores that received nutrients had large numbers of viable cells indicating that growth may be a mechanism to transport the cells through the rock. Electron microscopy indicates that the plugging by bacteria may involve the aggregation of clays and other insoluble materials with the bacterial biomass. 45 references, 16 figures, 7 tables.« less

Evaluation of the transporter-mediated herb-drug interaction potential of DA-9801, a standardized dioscorea extract for diabetic neuropathy, in human in vitro and rat in vivo.

PubMed

Song, Im-Sook; Kong, Tae Yeon; Jeong, Hyeon-Uk; Kim, Eun Nam; Kwon, Soon-Sang; Kang, Hee Eun; Choi, Sang-Zin; Son, Miwon; Lee, Hye Suk

2014-07-17

Drug transporters play important roles in the absorption, distribution, and elimination of drugs and thereby, modulate drug efficacy and toxicity. With a growing use of poly pharmacy, concurrent administration of herbal extracts that modulate transporter activities with drugs can cause serious adverse reactions. Therefore, prediction and evaluation of drug-drug interaction potential is important in the clinic and in the drug development process. DA-9801, comprising a mixed extract of Dioscoreae rhizoma and Dioscorea nipponica Makino, is a new standardized extract currently being evaluated for diabetic peripheral neuropathy in a phase II clinical study. The inhibitory effects of DA-9801 on the transport functions of organic cation transporter (OCT)1, OCT2, organic anion transporter (OAT)1, OAT3, organic anion transporting polypeptide (OATP)1B1, OATP1B3, P-glycoprotein (P-gp), and breast cancer resistance protein (BCRP) were investigated in HEK293 or LLC-PK1 cells. The effects of DA-9801 on the pharmacokinetics of relevant substrate drugs of these transporters were also examined in vivo in rats. DA-9801 inhibited the in vitro transport activities of OCT1, OCT2, OAT3, and OATP1B1, with IC50 values of 106, 174, 48.1, and 273 μg/mL, respectively, while the other transporters were not inhibited by 300 μg/mL DA-9801. To investigate whether this inhibitory effect of DA-9801 on OCT1, OCT2, and OAT3 could change the pharmacokinetics of their substrates in vivo, we measured the pharmacokinetics of cimetidine, a substrate for OCT1, OCT2, and OAT3, and of furosemide, a substrate for OAT1 and OAT3, by co-administration of DA-9801 at a single oral dose of 1,000 mg/kg. Pre-dose of DA-9801 5 min or 2 h prior to cimetidine administration decreased the Cmax of cimetidine in rats. However, DA-9801 did not affect the elimination parameters such as half-life, clearance, or amount excreted in the urine, suggesting that it did not inhibit elimination process of cimetidine, which is governed by OCT1, OCT2, and OAT3. Moreover, DA-9801 did not affect the pharmacokinetic characteristics of furosemide, as evidenced by its unchanged pharmacokinetic parameters. Inhibitory effects of DA-9801 on OCT1, OCT2, and OAT3 observed in vitro may not necessarily translate into in vivo herb-drug interactions in rats even at its maximum effective dose.

Sources and Processes Affecting Particulate Matter Pollution over North China

NASA Astrophysics Data System (ADS)

Zhang, L.; Shao, J.; Lu, X.; Zhao, Y.; Gong, S.; Henze, D. K.

2015-12-01

Severe fine particulate matter (PM2.5) pollution over North China has received broad attention worldwide in recent years. Better understanding the sources and processes controlling pollution over this region is of great importance with urgent implications for air quality policy. We will present a four-dimensional variational (4D-Var) data assimilation system using the GEOS-Chem chemical transport model and its adjoint model at 0.25° × 0.3125° horizontal resolution, and apply it to analyze the factors affecting PM2.5 concentrations over North China. Hourly surface observations of PM2.5 and sulfur dioxide (SO2) from the China National Environmental Monitoring Center (CNEMC) can be assimilated into the model to evaluate and constrain aerosol (primary and precursors) emissions. Application of the data assimilation system to the APEC period (the Asia-Pacific Economic Cooperation summit; 5-11 November 2014) shows that 46% of the PM2.5 pollution reduction during APEC ("The APEC Blue") can be attributed to meteorology conditions and the rest 54% to emission reductions due to strict emission controls. Ammonia emissions are shown to significantly contribute to PM2.5 over North China in the fall. By converting sulfuric acid and nitric acid to longer-lived ammonium sulfate and ammonium nitrate aerosols, ammonia plays an important role in promoting their regional transport influences. We will also discuss the pathways and mechanisms of external long-range transport influences to the PM2.5 pollution over North China.

A Data Envelopment Analysis Model for Selecting Material Handling System Designs

NASA Astrophysics Data System (ADS)

Liu, Fuh-Hwa Franklin; Kuo, Wan-Ting

The material handling system under design is an unmanned job shop with an automated guided vehicle that transport loads within the processing machines. The engineering task is to select the design alternatives that are the combinations of the four design factors: the ratio of production time to transportation time, mean job arrival rate to the system, input/output buffer capacities at each processing machine, and the vehicle control strategies. Each of the design alternatives is simulated to collect the upper and lower bounds of the five performance indices. We develop a Data Envelopment Analysis (DEA) model to assess the 180 designs with imprecise data of the five indices. The three-ways factorial experiment analysis for the assessment results indicates the buffer capacity and the interaction of job arrival rate and buffer capacity affect the performance significantly.

Syndrome of Hepatic Cirrhosis, Dystonia, Polycythemia, and Hypermanganesemia Caused by Mutations in SLC30A10, a Manganese Transporter in Man

PubMed Central

Tuschl, Karin; Clayton, Peter T.; Gospe, Sidney M.; Gulab, Shamshad; Ibrahim, Shahnaz; Singhi, Pratibha; Aulakh, Roosy; Ribeiro, Reinaldo T.; Barsottini, Orlando G.; Zaki, Maha S.; Del Rosario, Maria Luz; Dyack, Sarah; Price, Victoria; Rideout, Andrea; Gordon, Kevin; Wevers, Ron A.; “Kling” Chong, W.K.; Mills, Philippa B.

2012-01-01

Environmental manganese (Mn) toxicity causes an extrapyramidal, parkinsonian-type movement disorder with characteristic magnetic resonance images of Mn accumulation in the basal ganglia. We have recently reported a suspected autosomal recessively inherited syndrome of hepatic cirrhosis, dystonia, polycythemia, and hypermanganesemia in cases without environmental Mn exposure. Whole-genome mapping of two consanguineous families identified SLC30A10 as the affected gene in this inherited type of hypermanganesemia. This gene was subsequently sequenced in eight families, and homozygous sequence changes were identified in all affected individuals. The function of the wild-type protein and the effect of sequence changes were studied in the manganese-sensitive yeast strain Δpmr1. Expressing human wild-type SLC30A10 in the Δpmr1 yeast strain rescued growth in high Mn conditions, confirming its role in Mn transport. The presence of missense (c.266T>C [p.Leu89Pro]) and nonsense (c.585del [p.Thr196Profs∗17]) mutations in SLC30A10 failed to restore Mn resistance. Previously, SLC30A10 had been presumed to be a zinc transporter. However, this work has confirmed that SLC30A10 functions as a Mn transporter in humans that, when defective, causes Mn accumulation in liver and brain. This is an important step toward understanding Mn transport and its role in neurodegenerative processes. PMID:22341972

The plasma membrane of Saccharomyces cerevisiae: structure, function, and biogenesis.

PubMed Central

van der Rest, M E; Kamminga, A H; Nakano, A; Anraku, Y; Poolman, B; Konings, W N

1995-01-01

The composition of phospholipids, sphingolipids, and sterols in the plasma membrane has a strong influence on the activity of the proteins associated or embedded in the lipid bilayer. Since most lipid-synthesizing enzymes in Saccharomyces cerevisiae are located in intracellular organelles, an extensive flux of lipids from these organelles to the plasma membrane is required. Although the pathway of protein traffic to the plasma membrane is similar to that of most of the lipids, the bulk flow of lipids is separate from vesicle-mediated protein transport. Recent advances in the analysis of membrane budding and membrane fusion indicate that the mechanisms of protein transport from the endoplasmic reticulum to the Golgi and from the Golgi to plasma membrane are similar. The majority of plasma membrane proteins transport solutes across the membrane. A number of ATP-dependent export systems have been detected that couple the hydrolysis of ATP to transport of molecules out of the cell. The hydrolysis of ATP by the plasma membrane H(+)-ATPase generates a proton motive force which is used to drive secondary transport processes. In S. cerevisiae, many substrates are transported by more than one system. Transport of monosaccharide is catalyzed by uniport systems, while transport of disaccharides, amino acids, and nucleosides is mediated by proton symport systems. Transport activity can be regulated at the level of transcription, e.g., induction and (catabolite) repression, but transport proteins can also be affected posttranslationally by a process termed catabolite inactivation. Catabolite inactivation is triggered by the addition of fermentable sugars, intracellular acidification, stress conditions, and/or nitrogen starvation. Phosphorylation and/or ubiquitination of the transport proteins has been proposed as an initial step in the controlled inactivation and degradation of the target enzyme. The use of artificial membranes, like secretory vesicles and plasma membranes fused with proteoliposomes, as model systems for studies on the mechanism and regulation of transport is evaluated. PMID:7603412

Exploring the Role of Social Media and Individual Behaviors in Flood Evacuation Processes: An Agent-Based Modeling Approach

NASA Astrophysics Data System (ADS)

Du, Erhu; Cai, Ximing; Sun, Zhiyong; Minsker, Barbara

2017-11-01

Flood warnings from various information sources are important for individuals to make evacuation decisions during a flood event. In this study, we develop a general opinion dynamics model to simulate how individuals update their flood hazard awareness when exposed to multiple information sources, including global broadcast, social media, and observations of neighbors' actions. The opinion dynamics model is coupled with a traffic model to simulate the evacuation processes of a residential community with a given transportation network. Through various scenarios, we investigate how social media affect the opinion dynamics and evacuation processes. We find that stronger social media can make evacuation processes more sensitive to the change of global broadcast and neighbor observations, and thus, impose larger uncertainty on evacuation rates (i.e., a large range of evacuation rates corresponding to sources of information). For instance, evacuation rates are lower when social media become more influential and individuals have less trust in global broadcast. Stubborn individuals can significantly affect the opinion dynamics and reduce evacuation rates. In addition, evacuation rates respond to the percentage of stubborn agents in a nonlinear manner, i.e., above a threshold, the impact of stubborn agents will be intensified by stronger social media. These results highlight the role of social media in flood evacuation processes and the need to monitor social media so that misinformation can be corrected in a timely manner. The joint impacts of social media, quality of flood warnings, and transportation capacity on evacuation rates are also discussed.

Transport Regimes of Air Masses Affecting the Tropospheric Composition of the Canadian and European Arctic During RACEPAC 2014 and NETCARE 2014/2015

NASA Astrophysics Data System (ADS)

Bozem, H.; Hoor, P. M.; Koellner, F.; Kunkel, D.; Schneider, J.; Schulz, C.; Herber, A. B.; Borrmann, S.; Wendisch, M.; Ehrlich, A.; Leaitch, W. R.; Willis, M. D.; Burkart, J.; Thomas, J. L.; Abbatt, J.

2015-12-01

The Arctic is warming much faster than any other place in the world and undergoes a rapid change dominated by a changing climate in this region. The impact of polluted air masses traveling to the Arctic from various remote sources significantly contributes to the observed climate change, in contrast there are additional local emission sources contributing to the level of pollutants (trace gases and aerosol). Processes affecting the emission and transport of these pollutants are not well understood and need to be further investigated. We present aircraft based trace gas measurements in the Arctic during RACEPAC (2014) and NETCARE (2014 and 2015) with the Polar 6 aircraft of Alfred Wegener Institute (AWI) covering an area from 134°W to 17°W and 68°N to 83°N. We focus on cloud, aerosol and general transport processes of polluted air masses into the high Arctic. Based on CO and CO2 measurements and kinematic 10-day back trajectories we analyze the transport regimes prevalent during spring (RACEPAC 2014 and NETCARE 2015) and summer (NETCARE 2014) in the observed region. Whereas the eastern part of the Canadian Arctic is affected by air masses with their origin in Asia, in the central and western parts of the Canadian and European Arctic air masses from North America are predominant at the time of the measurement. In general the more northern parts of the Arctic were relatively unaffected by pollution from mid-latitudes since air masses mostly travel within the polar dome, being quite isolated. Associated mixing ratios of CO and CO2 fit into the seasonal cycle observed at NOAA ground stations throughout the Arctic, but show a more mid-latitudinal characteristic at higher altitudes. The transition is remarkably sharp and allows for a chemical definition of the polar dome. At low altitudes, synoptic disturbances transport polluted air masses from mid-latitudes into regions of the polar dome. These air masses contribute to the Arctic pollution background, but also contain single pollution plumes that perturb the background tracer distribution. These plumes could be traced back to biomass burning or flaring in remote regions, as well as local ship emissions within the measurement region.

49 CFR 804.6 - Procedures for closing meetings, or withholding information, and requests by affected persons to...

Code of Federal Regulations, 2010 CFR

2010-10-01

... 49 Transportation 7 2010-10-01 2010-10-01 false Procedures for closing meetings, or withholding information, and requests by affected persons to close a meeting. 804.6 Section 804.6 Transportation Other Regulations Relating to Transportation (Continued) NATIONAL TRANSPORTATION SAFETY BOARD RULES IMPLEMENTING THE GOVERNMENT IN THE SUNSHINE ACT §...

Pathogen transport in groundwater systems: Contrasts with traditional solute transport

USGS Publications Warehouse

Hunt, Randall J.; Johnson, William P.

2017-01-01

Water quality affects many aspects of water availability, from precluding use to societal perceptions of fit-for-purpose. Pathogen source and transport processes are drivers of water quality because they have been responsible for numerous outbreaks resulting in large economic losses due to illness and, in some cases, loss of life. Outbreaks result from very small exposure (e.g., less than 20 viruses) from very strong sources (e.g., trillions of viruses shed by a single infected individual). Thus, unlike solute contaminants, an acute exposure to a very small amount of contaminated water can cause immediate adverse health effects. Similarly, pathogens are larger than solutes. Thus, interactions with surfaces and settling become important even as processes important for solutes such as diffusion become less important. These differences are articulated in “Colloid Filtration Theory”, a separate branch of pore-scale transport. Consequently, understanding pathogen processes requires changes in how groundwater systems are typically characterized, where the focus is on the leading edges of plumes and preferential flow paths, even if such features move only a very small fraction of the aquifer flow. Moreover, the relatively short survival times of pathogens in the subsurface require greater attention to very fast (<10 year) flow paths. By better understanding the differences between pathogen and solute transport mechanisms discussed here, a more encompassing view of water quality and source water protection is attained. With this more holistic view and theoretical understanding, better evaluations can be made regarding drinking water vulnerability and the relation between groundwater and human health.

Estimating sediment budgets at the interface between rivers and estuaries with application to the Sacramento-San Joaquin River Delta

USGS Publications Warehouse

Wright, S.A.; Schoellhamer, D.H.

2005-01-01

[1] Where rivers encounter estuaries, a transition zone develops where riverine and tidal processes both affect sediment transport processes. One such transition zone is the Sacramento-San Joaquin River Delta, a large, complex system where several rivers meet to form an estuary (San Francisco Bay). Herein we present the results of a detailed sediment budget for this river/estuary transitional system. The primary regional goal of the study was to measure sediment transport rates and pathways in the delta in support of ecosystem restoration efforts. In addition to achieving this regional goal, the study has produced general methods to collect, edit, and analyze (including error analysis) sediment transport data at the interface of rivers and estuaries. Estimating sediment budgets for these systems is difficult because of the mixed nature of riverine versus tidal transport processes, the different timescales of transport in fluvial and tidal environments, and the sheer complexity and size of systems such as the Sacramento-San Joaquin River Delta. Sediment budgets also require error estimates in order to assess whether differences in inflows and outflows, which could be small compared to overall fluxes, are indeed distinguishable from zero. Over the 4 year period of this study, water years 1999-2002, 6.6 ?? 0.9 Mt of sediment entered the delta and 2.2 ?? 0.7 Mt exited, resulting in 4.4 ?? 1.1 Mt (67 ?? 17%) of deposition. The estimated deposition rate corresponding to this mass of sediment compares favorably with measured inorganic sediment accumulation on vegetated wetlands in the delta.

Biodegradation: Updating the concepts of control for microbial cleanup in contaminated aquifers.

PubMed

Meckenstock, Rainer U; Elsner, Martin; Griebler, Christian; Lueders, Tillmann; Stumpp, Christine; Aamand, Jens; Agathos, Spiros N; Albrechtsen, Hans-Jørgen; Bastiaens, Leen; Bjerg, Poul L; Boon, Nico; Dejonghe, Winnie; Huang, Wei E; Schmidt, Susanne I; Smolders, Erik; Sørensen, Sebastian R; Springael, Dirk; van Breukelen, Boris M

2015-06-16

Biodegradation is one of the most favored and sustainable means of removing organic pollutants from contaminated aquifers but the major steering factors are still surprisingly poorly understood. Growing evidence questions some of the established concepts for control of biodegradation. Here, we critically discuss classical concepts such as the thermodynamic redox zonation, or the use of steady state transport scenarios for assessing biodegradation rates. Furthermore, we discuss if the absence of specific degrader populations can explain poor biodegradation. We propose updated perspectives on the controls of biodegradation in contaminant plumes. These include the plume fringe concept, transport limitations, and transient conditions as currently underestimated processes affecting biodegradation.

GOES-S Atlas V Centaur Stage Transport from ASOC to DOC

NASA Image and Video Library

2018-01-24

The Centaur upper stage that will help launch NOAA's Geostationary Operational Environmental Satellite-S, or GOES-S, is being transported to the Delta Operations Center at Cape Canaveral Air Force Station for further processing. GOES-S is the second in a series of four advanced geostationary weather satellites. The GOES-R series - consisting of the GOES-R, GOES-S, GOES-T and GOES-U spacecraft - will significantly improve the detection and observation of environmental phenomena that directly affect public safety, protection of property and the nation's economic health and prosperity. GOES-S is slated to launch March 1, 2018 aboard a United Launch Alliance Atlas V rocket.

Investigating the role of gas bubble formation and entrapment in contaminated aquifers: Reactive transport modelling

USGS Publications Warehouse

Amos, Richard T.; Mayer, K. Ulrich

2006-01-01

In many natural and contaminated aquifers, geochemical processes result in the production or consumption of dissolved gases. In cases where methanogenesis or denitrification occurs, the production of gases may result in the formation and growth of gas bubbles below the water table. Near the water table, entrapment of atmospheric gases during water table rise may provide a significant source of O2 to waters otherwise depleted in O2. Furthermore, the presence of bubbles will affect the hydraulic conductivity of an aquifer, resulting in changes to the groundwater flow regime. The interactions between physical transport, biogeochemical processes, and gas bubble formation, entrapment and release is complex and requires suitable analysis tools. The objective of the present work is the development of a numerical model capable of quantitatively assessing these processes. The multicomponent reactive transport code MIN3P has been enhanced to simulate bubble growth and contraction due to in-situ gas production or consumption, bubble entrapment due to water table rise and subsequent re-equilibration of the bubble with ambient groundwater, and permeability changes due to trapped gas phase saturation. The resulting formulation allows for the investigation of complex geochemical systems where microbially mediated redox reactions both produce and consume gases as well as affect solution chemistry, alkalinity, and pH. The enhanced model has been used to simulate processes in a petroleum hydrocarbon contaminated aquifer where methanogenesis is an important redox process. The simulations are constrained by data from a crude oil spill site near Bemidji, MN. Our results suggest that permeability reduction in the methanogenic zone due to in-situ formation of gas bubbles, and dissolution of entrapped atmospheric bubbles near the water table, both work to attenuate the dissolved gas plume emanating from the source zone. Furthermore, the simulations demonstrate that under the given conditions more than 50% of all produced CH4 partitions to the gas phase or is aerobically oxidised near the water table, suggesting that these processes should be accounted for when assessing the rate and extent of methanogenic degradation of hydrocarbons.

Investigating the role of gas bubble formation and entrapment in contaminated aquifers: Reactive transport modelling

NASA Astrophysics Data System (ADS)

Amos, Richard T.; Ulrich Mayer, K.

2006-09-01

In many natural and contaminated aquifers, geochemical processes result in the production or consumption of dissolved gases. In cases where methanogenesis or denitrification occurs, the production of gases may result in the formation and growth of gas bubbles below the water table. Near the water table, entrapment of atmospheric gases during water table rise may provide a significant source of O 2 to waters otherwise depleted in O 2. Furthermore, the presence of bubbles will affect the hydraulic conductivity of an aquifer, resulting in changes to the groundwater flow regime. The interactions between physical transport, biogeochemical processes, and gas bubble formation, entrapment and release is complex and requires suitable analysis tools. The objective of the present work is the development of a numerical model capable of quantitatively assessing these processes. The multicomponent reactive transport code MIN3P has been enhanced to simulate bubble growth and contraction due to in-situ gas production or consumption, bubble entrapment due to water table rise and subsequent re-equilibration of the bubble with ambient groundwater, and permeability changes due to trapped gas phase saturation. The resulting formulation allows for the investigation of complex geochemical systems where microbially mediated redox reactions both produce and consume gases as well as affect solution chemistry, alkalinity, and pH. The enhanced model has been used to simulate processes in a petroleum hydrocarbon contaminated aquifer where methanogenesis is an important redox process. The simulations are constrained by data from a crude oil spill site near Bemidji, MN. Our results suggest that permeability reduction in the methanogenic zone due to in-situ formation of gas bubbles, and dissolution of entrapped atmospheric bubbles near the water table, both work to attenuate the dissolved gas plume emanating from the source zone. Furthermore, the simulations demonstrate that under the given conditions more than 50% of all produced CH 4 partitions to the gas phase or is aerobically oxidised near the water table, suggesting that these processes should be accounted for when assessing the rate and extent of methanogenic degradation of hydrocarbons.

Poleward energy transport: is the standard definition physically relevant at all time scales?

NASA Astrophysics Data System (ADS)

Liang, Minyi; Czaja, Arnaud; Graversen, Rune; Tailleux, Remi

2018-03-01

Poleward energy transport in the atmosphere and oceans constitutes an important branch of the global energy budget, and its role in the climate system has been the subject of many studies. In the atmosphere, the transport is affected by "eddies" and large scale meridional cells, both with zero net mass transport across latitude circles, but also partly by processes associated with a net transport of mass across latitude circles. The latter must cease to operate in steady state, but they may be significant when time variability of the heat budget is considered. Indeed, examination of reanalysis data on short (daily to monthly) timescales shows that mass variations on these timescales result in surprisingly large fluctuations (in excess of 10^{15} W = 1 PW) in the poleward heat transport. These fluctuations are referred to as "extensive", for they primarily alter the mass integrated energy of the region considered, but not its averaged value. It is suggested that extensive fluctuations mask more meaningful climate signals present in the heat transport variability on monthly and interannual timescales, and a new formulation is proposed to isolate the latter. This new formulation is applied successfully to reanalysis data and climate model simulations.

Abnormal photoreceptor outer segment development and early retinal degeneration in kif3a mutant zebrafish.

PubMed

Raghupathy, Rakesh K; Zhang, Xun; Alhasani, Reem H; Zhou, Xinzhi; Mullin, Margaret; Reilly, James; Li, Wenchang; Liu, Mugen; Shu, Xinhua

2016-08-01

Photoreceptors are highly specialized sensory neurons that possess a modified primary cilium called the outer segment. Photoreceptor outer segment formation and maintenance require highly active protein transport via a process known as intraflagellar transport. Anterograde transport in outer segments is powered by the heterotrimeric kinesin II and coordinated by intraflagellar transport proteins. Here, we describe a new zebrafish model carrying a nonsense mutation in the kinesin II family member 3A (kif3a) gene. Kif3a mutant zebrafish exhibited curved body axes and kidney cysts. Outer segments were not formed in most parts of the mutant retina, and rhodopsin was mislocalized, suggesting KIF3A has a role in rhodopsin trafficking. Both rod and cone photoreceptors degenerated rapidly between 4 and 9 days post fertilization, and electroretinography response was not detected in 7 days post fertilization mutant larvae. Loss of KIF3A in zebrafish also resulted in an intracellular transport defect affecting anterograde but not retrograde transport of organelles. Our results indicate KIF3A plays a conserved role in photoreceptor outer segment formation and intracellular transport. Copyright © 2016 John Wiley & Sons, Ltd.

Poleward Energy Transport: Is the Standard Definition Physically Relevant at All Time Scales?

NASA Astrophysics Data System (ADS)

Liang, M.; Czaja, A.; Graversen, R.; Tailleux, R.

2017-12-01

Poleward energy transport in the atmosphere and oceans constitutes an important branch of the global energy budget, and its role in the climate system has been the subject of many studies. In the atmosphere, the transport is affected by ''eddies'' and large scale meridional cells, both with zero net mass transport across latitude circles, but also partly by processes associated with a net transport of mass across latitude circles. The latter must cease to operate in steady state, but they may be significant when time variability of the heat budget is considered. Indeed, examination of reanalysis data on short (daily to monthly) timescales shows that mass variations on these timescales result in surprisingly large fluctuations (in excess of 1015W = 1PW) in the poleward heat transport. These fluctuations are referred to as ''extensive'', for they primarily alter the mass integrated energy of the region considered, but not its averaged value. It is suggested that extensive fluctuations mask more meaningful climate signals present in the heat transport variability, and a new formulation is proposed to isolate the latter. This new formulation is applied successfully to reanalysis data and climate model simulations.

Food can lift mood by affecting mood-regulating neurocircuits via a serotonergic mechanism.

PubMed

Kroes, Marijn C W; van Wingen, Guido A; Wittwer, Jonas; Mohajeri, M Hasan; Kloek, Joris; Fernández, Guillén

2014-01-01

It is commonly assumed that food can affect mood. One prevalent notion is that food containing tryptophan increases serotonin levels in the brain and alters neural processing in mood-regulating neurocircuits. However, tryptophan competes with other long-neutral-amino-acids (LNAA) for transport across the blood-brain-barrier, a limitation that can be mitigated by increasing the tryptophan/LNAA ratio. We therefore tested in a double-blind, placebo-controlled crossover study (N=32) whether a drink with a favourable tryptophan/LNAA ratio improves mood and modulates specific brain processes as assessed by functional magnetic resonance imaging (fMRI). We show that one serving of this drink increases the tryptophan/LNAA ratio in blood plasma, lifts mood in healthy young women and alters task-specific and resting-state processing in brain regions implicated in mood regulation. Specifically, Test-drink consumption reduced neural responses of the dorsal caudate nucleus during reward anticipation, increased neural responses in the dorsal cingulate cortex during fear processing, and increased ventromedial prefrontal-lateral prefrontal connectivity under resting-state conditions. Our results suggest that increasing tryptophan/LNAA ratios can lift mood by affecting mood-regulating neurocircuits. © 2013 Elsevier Inc. All rights reserved.

Chiral chemicals as tracers of atmospheric sources and fate processes in a world of changing climate.

PubMed

F Bidleman, Terry; M Jantunen, Liisa; Binnur Kurt-Karakus, Perihan; Wong, Fiona; Hung, Hayley; Ma, Jianmin; Stern, Gary; Rosenberg, Bruno

2013-01-01

Elimination of persistent organic pollutants (POPs) under national and international regulations reduces "primary" emissions, but "secondary" emissions continue from residues deposited in soil, water, ice and vegetation during former years of usage. In a future, secondary source controlled world, POPs will follow the carbon cycle and biogeochemical processes will determine their transport, accumulation and fate. Climate change is likely to affect mobilisation of POPs through e.g., increased temperature, altered precipitation and wind patterns, flooding, loss of ice cover in polar regions, melting glaciers, and changes in soil and water microbiology which affect degradation and transformation. Chiral compounds offer advantages for following transport and fate pathways because of their ability to distinguish racemic (newly released or protected from microbial attack) and nonracemic (microbially degraded) sources. This paper discusses the rationale for this approach and suggests applications where chiral POPs could aid investigation of climate-mediated exchange and degradation processes. Multiyear measurements of two chiral POPs, trans-chlordane and α-HCH, at a Canadian Arctic air monitoring station show enantiomer compositions which cycle seasonally, suggesting varying source contributions which may be under climatic control. Large-scale shifts in the enantioselective metabolism of chiral POPs in soil and water might influence the enantiomer composition of atmospheric residues, and it would be advantageous to include enantiospecific analysis in POPs monitoring programs.

Chiral Chemicals as Tracers of Atmospheric Sources and Fate Processes in a World of Changing Climate

PubMed Central

F. Bidleman, Terry; M. Jantunen, Liisa; Binnur Kurt-Karakus, Perihan; Wong, Fiona; Hung, Hayley; Ma, Jianmin; Stern, Gary; Rosenberg, Bruno

2013-01-01

Elimination of persistent organic pollutants (POPs) under national and international regulations reduces “primary” emissions, but “secondary” emissions continue from residues deposited in soil, water, ice and vegetation during former years of usage. In a future, secondary source controlled world, POPs will follow the carbon cycle and biogeochemical processes will determine their transport, accumulation and fate. Climate change is likely to affect mobilisation of POPs through e.g., increased temperature, altered precipitation and wind patterns, flooding, loss of ice cover in polar regions, melting glaciers, and changes in soil and water microbiology which affect degradation and transformation. Chiral compounds offer advantages for following transport and fate pathways because of their ability to distinguish racemic (newly released or protected from microbial attack) and nonracemic (microbially degraded) sources. This paper discusses the rationale for this approach and suggests applications where chiral POPs could aid investigation of climate-mediated exchange and degradation processes. Multiyear measurements of two chiral POPs, trans-chlordane and α-HCH, at a Canadian Arctic air monitoring station show enantiomer compositions which cycle seasonally, suggesting varying source contributions which may be under climatic control. Large-scale shifts in the enantioselective metabolism of chiral POPs in soil and water might influence the enantiomer composition of atmospheric residues, and it would be advantageous to include enantiospecific analysis in POPs monitoring programs. PMID:24349938

Competitive adsorption/desorption of tetracycline, oxytetracycline and chlortetracycline on two acid soils: Stirred flow chamber experiments.

PubMed

Fernández-Calviño, David; Bermúdez-Couso, Alipio; Arias-Estévez, Manuel; Nóvoa-Muñoz, Juan Carlos; Fernández-Sanjurjo, Maria J; Álvarez-Rodríguez, Esperanza; Núñez-Delgado, Avelino

2015-09-01

The objective of this work was to study the competitive adsorption/desorption of tetracycline (TC), oxytetracycline (OTC) and chlortetracycline (CTC) on two acid soils. We used the stirred flow chamber technique to obtain experimental data on rapid kinetic processes affecting the retention/release of the antibiotics. Both adsorption and desorption were higher on soil 1 (which showed the highest carbon, clay and Al and Fe oxides content) than on soil 2. Moreover, hysteresis affected the adsorption/desorption processes. Experimental data were fitted to a pseudo-first order equation, resulting qamax (adsorption maximum) values that were higher for soil 1 than for soil 2, and indicating that CTC competed with TC more intensely than OTC in soil 1. Regarding soil 2, the values corresponding to the adsorption kinetics constants (ka) and desorption kinetics constants for fast sites (kd1), followed a trend inverse to qamax and qdmax respectively. In conclusion, competition affected adsorption/desorption kinetics for the three antibiotics assayed, and thus retention/release and subsequent transport processes in soil and water environments. Copyright © 2015 Elsevier Ltd. All rights reserved.

Non-axisymmetric Flows and Transport in the Edge of MST

NASA Astrophysics Data System (ADS)

Miller, Matthew Charles

Magnetic reconnection occurs in plasmas all throughout the universe and is responsible for spectacular and perplexing phenomena. In the Madison Symmetric Torus (MST) reversed field pinch (RFP), reconnection occurs as quasi-periodic bursts of tearing instabilities (saw-teeth), which give rise to a number of processes that affect the RFP's global behavior and confinement. This work examines the structure of turbulent plasma flow in the edge region and its role in affecting momentum and particle transport through the use of several insertable probes and novel ensemble techniques. Very few measurements exist of tearing mode flow structures. The flow structure has now been measured for m = 0 modes and is in good agreement with theoretical expectations for nonlinear resistive MHD calculated for the RFP using DEBS and NIMROD. The flows are predicted and measured to be different than the classical Sweet-Parker picture with symmetric inward flows. The flow fluctuations have a profound effect on momentum transport, which is trans- ported rapidly at the crash. This work advances the understanding of this process by measuring the Reynolds stress associated with turbulent flow. Combined with measurements of the Maxwell stress, a new picture for magnetic self-organization in the RFP via two-fluid physics has emerged. The Reynolds and Maxwell stresses are measured to be an order of magnitude larger than the rate of change in inertia but oppositely directed such that they almost cancel. Two-fluid effects are significant because of the relationship be- tween the Maxwell stress and the Hall dynamo, a term only existing in two-fluid theories. This relationship inextricably couples the momentum dynamics with the current dynamics. Indeed, the parallel momentum profile exhibits a relaxation at the crash akin to the relaxation seen in the parallel current density profile. Tearing modes also drive particle transport. Fluctuation-induced particle flux is resolved through a crash by measuring it directly as < neur>. The flux increases dramatically during a crash and is non-axisymmetric. Between crashes, the transport from tearing is small, which agrees with previous measurements that identified electrostatic transport as dominant at that time.

Compositon of sediments transported by the wind at different heights

NASA Astrophysics Data System (ADS)

Iturri, Antonela; Funk, Roger; Leue, Martin; Sommer, Michael; Buschiazzo, Daniel

2017-04-01

Wind erosion (WE) is one of the most important degradation process of soils in arid- and semiarid environments in the world, affecting soil properties and adjacent ecosystems, including human health. Estimations about the amount of eroded soil are available in Argentina and in the world, but the quality of the eroded sediments, particularly the sorting effects in agricultural soils, has been scarcely studied. The trend of the different mineral and organic soil compounds, which enrich in different size classes, can define height distribution profiles. Therefore, the uppermost 2.5 cm of four agricultural loess soils that differ in granulometric composition were used for WE simulations in a wind tunnel. Particles with a diameter smaller than 10 µm (PM10) were collected with a laboratory dust generator. The bulk soil and all the sediment samples were characterized by the granulometric composition, the soil organic carbon (SOC) content and the mineral and organic functional groups. Despite different texture, the soils were subjected to similar sorting processes in height, but differed depending on their granulometry. There was a separation between coarser and finer soil particles in coarser textured soils, while finer textured soils were more homogeneous in all heights. This correlated with the preferential transport of Si-O from quartz and C-H, C=O and C-C from soil organic matter (SOM), which were transported in larger and/or denser particles at lower heights. O-H from clay minerals and C-O-C and C-O from polysaccharides, carbohydrates and derivatives from SOM were transported in higher heights. Despite similar SOC content in the bulk soils, both the amount and composition in the PM10 fractions was different. The SOC transported at higher heights was mostly composed of polysaccharides, carbohydrates and derivatives associated with clay minerals. The SOC in PM10 fractions of coarser-textured soils was dominated by labile C-H groups. According to the determined height distribution profiles, it can be deduced that WE may affect both soil quality and the soil C balance due to the sorting effects during transport.

Localization and function of GABA transporters in the globus pallidus of parkinsonian monkeys

PubMed Central

Galvan, Adriana; Hu, Xing; Smith, Yoland; Wichmann, Thomas

2010-01-01

The GABA transporters GAT-1 and GAT-3 are abundant in the external and internal segments of the globus pallidus (GPe and GPi, respectively). We have shown that pharmacological blockade of either of these transporters results in decreased neuronal firing, and in elevated levels of extracellular GABA in normal monkeys. We now studied whether the electrophysiologic and biochemical effects of local intra-pallidal injections of GAT-1 and GAT-3 blockers, or the subcellular localization of these transporters, are altered in monkeys rendered parkinsonian by the administration of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP). The subcellular localization of the transporters in GPe and GPi, studied with electron microscopy immunoperoxidase, was similar to that found in normal animals: i.e., GAT-3 immunoreactivity was mostly confined to glial processes, while GAT-1 labeling was expressed in unmyelinated axons and glial processes. A combined injection/recording device was used to record extracellular activity of single neurons in GPe and GPi, before, during and after administration of small volumes (1 μl) of either the GAT-1 inhibitor, SKF-89976A hydrochloride (720 ng), or the GAT-3 inhibitor, (S)-SNAP-5114 (500 ng). In GPe, the effects of GAT-1 or GAT-3 blockade were similar to those seen in normal monkeys. However, unlike the findings in the normal state, the firing of most neurons was not affected by blockade of either transporter in GPi. These results suggest that, after dopaminergic depletion, the functions of GABA transporters are altered in GPi; without major changes in their subcellular localization. PMID:20138865

Larval Transport on the Atlantic Continental Shelf of North America: a Review

NASA Astrophysics Data System (ADS)

Epifanio, C. E.; Garvine, R. W.

2001-01-01

This review considers transport of larval fish and crustaceans on the continental shelf. Previous reviews have contained only limited treatments of the physical processes involved. The present paper provides a physical background that is considerably more comprehensive. It includes a discussion of three principal forcing agents: (1) wind stress; (2) tides propagating from the deep ocean; and (3) differences in density associated with the buoyant outflow of estuaries, surface heat flux, or the interaction of coastal and oceanic water masses at the seaward margin of the shelf. The authors discuss the effects of these forcing agents on transport of larvae in the Middle Atlantic and South Atlantic Bights along the east coast of North America. The discussion concentrates on three species (blue crab, menhaden, bluefish) that have been the subject of a very recent multi-disciplinary study. Taken as a whole, the reproductive activities of these three species span the entire year and utilize the entire shelf, from the most seaward margin to the estuarine nursery. The blue crab is representative of species affected by physical processes occurring during summer and early autumn on the inner and mid-shelf. Menhaden are impacted by processes occurring in winter on the outer and mid-shelf. Bluefish are influenced primarily by processes occurring during early spring at the outer shelf margin near the western boundary current. The authors conclude that alongshore wind stress and density differences, i.e. buoyancy-driven flow, are the primary agents of larval transport in the region. Circulation associated with the western boundary current is only important at the shelf margin and tidally driven processes are generally inconsequential.

Investigation of cross-linking characteristics of novel hole-transporting materials for solution-processed phosphorescent OLEDs

NASA Astrophysics Data System (ADS)

Lee, Jaemin; Ameen, Shahid; Lee, Changjin

2016-04-01

After the success of commercialization of the vacuum-evaporated organic light-emitting diodes (OLEDs), solutionprocessing or printing of OLEDs are currently attracting much research interests. However, contrary to various kinds of readily available vacuum-evaporable OLED materials, the solution-processable OLED materials are still relatively rare. Hole-transporting layer (HTL) materials for solution-processed OLEDs are especially limited, because they need additional characteristics such as cross-linking to realize multilayer structures in solution-processed OLEDs, as well as their own electrically hole-transporting characteristics. The presence of such cross-linking characteristics of solutionprocessable HTL materials therefore makes them more challenging in the development stage, and also makes them essence of solution-processable OLED materials. In this work, the structure-property relationships of thermally crosslinkable HTL materials were systematically investigated by changing styrene-based cross-linking functionalities and modifying the carbazole-based hole-transporting core structures. The temperature dependency of the cross-linking characteristics of the HTL materials was systematically investigated by the UV-vis. absorption spectroscopy. The new HTL materials were also applied to green phosphorescent OLEDs, and their device characteristics were also investigated based on the chemical structures of the HTL materials. The device configuration was [ITO / PEDOT:PSS / HTL / EML / ETL / CsF / Al]. We found out that the chemical structures of the cross-linking functionalities greatly affect not only the cross-linking characteristics of the resultant HTL materials, but also the resultant OLED device characteristics. The increase of the maximum luminance and efficiency of OLEDs was evident as the cross-linking temperature decreases from higher than 200°C to at around 150°C.

New insights into saline water evaporation from porous media: Complex interaction between evaporation rates, precipitation, and surface temperature

NASA Astrophysics Data System (ADS)

Shokri-Kuehni, Salomé M. S.; Vetter, Thomas; Webb, Colin; Shokri, Nima

2017-06-01

Understanding salt transport and deposition patterns during evaporation from porous media is important in many engineering and hydrological processes such as soil salinization, ecosystem functioning, and land-atmosphere interaction. As evaporation proceeds, salt concentration increases until it exceeds solubility limits, locally, and crystals precipitate. The interplay between transport processes, crystallization, and evaporation influences where crystallization occurs. During early stages, the precipitated salt creates an evolving porous structure affecting the evaporation kinetics. We conducted a comprehensive series of experiments to investigate how the salt concentration and precipitation influence evaporation dynamics. Our results illustrate the contribution of the evolving salt crust to the evaporative mass losses. High-resolution thermal imaging enabled us to investigate the complex temperature dynamics at the surface of precipitated salt, providing further confirmation of salt crust contribution to the evaporation. We identify different phases of saline water evaporation from porous media with the corresponding dominant mechanisms in each phase and extend the physical understanding of such processes.

Regional Modelling of Air Quality in the Canadian Arctic: Impact of marine shipping and North American wild fire emissions

NASA Astrophysics Data System (ADS)

Gong, W.; Beagley, S. R.; Zhang, J.; Cousineau, S.; Sassi, M.; Munoz-Alpizar, R.; Racine, J.; Menard, S.; Chen, J.

2015-12-01

Arctic atmospheric composition is strongly influenced by long-range transport from mid-latitudes as well as processes occurring in the Arctic locally. Using an on-line air quality prediction model GEM-MACH, simulations were carried out for the 2010 northern shipping season (April - October) over a regional Arctic domain. North American wildfire emissions and Arctic shipping emissions were represented, along with other anthropogenic and biogenic emissions. Sensitivity studies were carried out to investigate the principal sources and processes affecting air quality in the Canadian Northern and Arctic regions. In this paper, we present an analysis of sources, transport, and removal processes on the ambient concentrations and atmospheric loading of various pollutants with air quality and climate implications, such as, O3, NOx, SO2, CO, and aerosols (sulfate, black carbon, and organic carbon components). Preliminary results from a model simulation of a recent summertime Arctic field campaign will also be presented.

[New toxicological patterns of nanomaterials, nanostructures and nanoparticles].

PubMed

Mazzotta, M; Mazzotta, A D; Fernández, M; Tamborino, B; De Filippis, G

2012-01-01

Nanomaterials engineered as nanotubes, quantum-dots, dendrimers or hybrid systems are increasing themselves by an annual mean rate of 4-5%, with rapid spread in various sectors e.g. biomedical. The liposolubility through membranes and the hydrosolubility through active transport do not interfere with nanoparticles below a certain size, which without activation processes and carrier, transport through thanks to capillaries, to intracellular pores (60 - 70 nm) and fissures (4 - 6 nm) in the same membranes. Conversely, in the processes of pinocytosis/endocytosis energy and carrier are required and endocytosis clathrin/caveolae mediated,is respectively for nanoparticles higher or lower than 200 nm. In occupational hazard nanostructures ranging from a few nm up to 100 - 150 nm have the ability to affect several organs through inhalation, intestinal, parental or dermal route of access. New toxicological aspects are associated to the capacity of nanomaterials of being more or less biocompatible or hydrosoluble, of creating bonds with proteins or to determine accumulation in the cells due to an incomplete elimination process.

Curriculum in biomedical optics and laser-tissue interactions

NASA Astrophysics Data System (ADS)

Jacques, Steven L.

2003-10-01

A graduate student level curriculum has been developed for teaching the basic principles of how lasers and light interact with biological tissues and materials. The field of Photomedicine can be divided into two topic areas: (1) where tissue affects photons, used for diagnostic sensing, imaging, and spectroscopy of tissues and biomaterials, and (2) where photons affect tissue, used for surgical and therapeutic cutting, dissecting, machining, processing, coagulating, welding, and oxidizing tissues and biomaterials. The courses teach basic principles of tissue optical properties and light transport in tissues, and interaction of lasers and conventional light sources with tissues via photochemical, photothermal and photomechanical mechanisms.

Simulating the Effects of Semivolatile Compounds on Cloud Processing of Aerosol

NASA Astrophysics Data System (ADS)

Kokkola, H.; Kudzotsa, I.; Tonttila, J.; Raatikainen, T.; Romakkaniemi, S.

2017-12-01

Aerosol removal processes largely dictate how well aerosol is transported in the atmosphere and thus the aerosol load over remote regions depends on how effectively aerosol is removed during its transport from the source regions. This means that in order to model the global distribution aerosol, both in vertical and horizontal, wet deposition processes have to be properly modelled. However, in large scale models, the description of wet removal and the vertical redistribution of aerosol by cloud processes is often extremely simplified.Here we present a novel aerosol-cloud model SALSA, where the aerosol properties are tracked through different cloud processes. These processes include: cloud droplet activation, precipitation formation, ice nucleation, melting, and evaporation. It is a sectional model that includes separate size sections for non-activated aerosol, cloud droplets, precipitation droplets, and ice crystals. The aerosol-cloud model was coupled to a large eddy model UCLALES which simulates the boundary-layer dynamics. In this study, the model has been applied in studying the wet removal as well as interactions between aerosol, clouds, and semi-volatile compounds, ammonia and nitric acid. These semi-volative compounds are special in the sense that they co-condense together with water during cloud activation and have been suggested to form droplets that can be considered cloud-droplet-like already in subsaturated conditions. In our model, we calculate the kinetic partitioning of ammonia and sulfate thus explicitly taking into account the effect of ammonia and nitric acid in the cloud formation. Our simulations indicate that especially in polluted conditions, these compounds significantly affect the properties of cloud droplets thus significantly affecting the lifecycle of different aerosol compounds.

Sorption and transport of iodine species in sediments from the Savannah River and Hanford Sites.

PubMed

Hu, Qinhong; Zhao, Pihong; Moran, Jean E; Seaman, John C

2005-07-01

Iodine is an important element in studies of environmental protection and human health, global-scale hydrologic processes and nuclear nonproliferation. Biogeochemical cycling of iodine is complex, because iodine occurs in multiple oxidation states and as inorganic and organic species that may be hydrophilic, atmophilic, and biophilic. In this study, we applied new analytical techniques to study the sorption and transport behavior of iodine species (iodide, iodate, and 4-iodoaniline) in sediments collected at the Savannah River and Hanford Sites, where anthropogenic (129)I from prior nuclear fuel processing activities poses an environmental risk. We conducted integrated column and batch experiments to investigate the interconversion, sorption and transport of iodine species, and the sediments we examined exhibit a wide range in organic matter, clay mineralogy, soil pH, and texture. The results of our experiments illustrate complex behavior with various processes occurring, including iodate reduction, irreversible retention or mass loss of iodide, and rate-limited and nonlinear sorption. There was an appreciable iodate reduction to iodide, presumably mediated by the structural Fe(II) in some clay minerals; therefore, careful attention must be given to potential interconversion among species when interpreting the biogeochemical behavior of iodine in the environment. The different iodine species exhibited dramatically different sorption and transport behavior in three sediment samples, possessing different physico-chemical properties, collected from different depths at the Savannah River Site. Our study yielded additional insight into processes and mechanisms affecting the geochemical cycling of iodine in the environment, and provided quantitative estimates of key parameters (e.g., extent and rate of sorption) for risk assessment at these sites.

Observing non-equilibrium state of transport through graphene channel at the nano-second time-scale

NASA Astrophysics Data System (ADS)

Mishra, Abhishek; Meersha, Adil; Raghavan, Srinivasan; Shrivastava, Mayank

2017-12-01

Electrical performance of a graphene FET is drastically affected by electron-phonon inelastic scattering. At high electric fields, the out-of-equilibrium population of optical phonons equilibrates by emitting acoustic phonons, which dissipate the energy to heat sinks. The equilibration time of the process is governed by thermal diffusion time, which is few nano-seconds for a typical graphene FET. The nano-second time-scale of the process keeps it elusive to conventional steady-state or DC measurement systems. Here, we employ a time-domain reflectometry-based technique to electrically probe the device for few nano-seconds and investigate the non-equilibrium state. For the first time, the transient nature of electrical transport through graphene FET is revealed. A maximum change of 35% in current and 50% in contact resistance is recorded over a time span of 8 ns, while operating graphene FET at a current density of 1 mA/μm. The study highlights the role of intrinsic heating (scattering) in deciding metal-graphene contact resistance and transport through the graphene channel.

Heat perturbation spreading in the Fermi-Pasta-Ulam-β system with next-nearest-neighbor coupling: Competition between phonon dispersion and nonlinearity

NASA Astrophysics Data System (ADS)

Xiong, Daxing

2017-06-01

We employ the heat perturbation correlation function to study thermal transport in the one-dimensional Fermi-Pasta-Ulam-β lattice with both nearest-neighbor and next-nearest-neighbor couplings. We find that such a system bears a peculiar phonon dispersion relation, and thus there exists a competition between phonon dispersion and nonlinearity that can strongly affect the heat correlation function's shape and scaling property. Specifically, for small and large anharmoncities, the scaling laws are ballistic and superdiffusive types, respectively, which are in good agreement with the recent theoretical predictions; whereas in the intermediate range of the nonlinearity, we observe an unusual multiscaling property characterized by a nonmonotonic delocalization process of the central peak of the heat correlation function. To understand these multiscaling laws, we also examine the momentum perturbation correlation function and find a transition process with the same turning point of the anharmonicity as that shown in the heat correlation function. This suggests coupling between the momentum transport and the heat transport, in agreement with the theoretical arguments of mode cascade theory.

Challenges and Opportunities with Predicting in Vivo Phase II Metabolism via Glucuronidation from in Vitro Data

PubMed Central

Ge, Shufan; Tu, Yifan; Hu, Ming

2017-01-01

Glucuronidation is the most important phase II metabolic pathway which is responsible for the clearance of many endogenous and exogenous compounds. To better understand the elimination process for compounds undergoing glucuronidation and identify compounds with desirable in vivo pharmacokinetic properties, many efforts have been made to predict in vivo glucuronidation using in vitro data. In this article, we reviewed typical approaches used in previous predictions. The problems and challenges in prediction of glucuronidation were discussed. Besides that different incubation conditions can affect the prediction accuracy, other factors including efflux / uptake transporters, enterohepatic recycling, and deglucuronidation reactions also contribute to the disposition of glucuronides and make the prediction more difficult. PBPK modeling, which can describe more complicated process in vivo, is a promising prediction strategy which may greatly improve the prediction of glucuronidation and potential DDIs involving glucuronidation. Based on previous studies, we proposed a transport-glucuronidation classification system, which was built based on the kinetics of both glucuronidation and transport of the glucuronide. This system could be a very useful tool to achieve better in vivo predictions. PMID:28966903

Processes governing phytoplankton blooms in estuaries. II: The role of horizontal transport

USGS Publications Warehouse

Lucas, L.V.; Koseff, Jeffrey R.; Monismith, Stephen G.; Cloern, J.E.; Thompson, J.K.

1999-01-01

The development and distribution of phytoplankton blooms in estuaries are functions of both local conditions (i.e. the production-loss balance for a water column at a particular spatial location) and large-scale horizontal transport. In this study, the second of a 2-paper series, we use a depth-averaged hydrodynamic-biological model to identify transport-related mechanisms impacting phytoplankton biomass accumulation and distribution on a system level. We chose South San Francisco Bay as a model domain, since its combination of a deep channel surrounded by broad shoals is typical of drowned-river estuaries. Five general mechanisms involving interaction of horizontal transport with variability in local conditions are discussed. Residual (on the order of days to weeks) transport mechanisms affecting bloom development and location include residence time/export, import, and the role of deep channel regions as conduits for mass transport. Interactions occurring on tidal time scales, i.e. on the order of hours) include the phasing of lateral oscillatory tidal flow relative to temporal changes in local net phytoplankton growth rates, as well as lateral sloshing of shoal-derived biomass into deep channel regions during ebb and back into shallow regions during flood tide. Based on these results, we conclude that: (1) while local conditions control whether a bloom is possible, the combination of transport and spatial-temporal variability in local conditions determines if and where a bloom will actually occur; (2) tidal-time-scale physical-biological interactions provide important mechanisms for bloom development and evolution. As a result of both subtidal and tidal-time-scale transport processes, peak biomass may not be observed where local conditions are most favorable to phytoplankton production, and inherently unproductive areas may be regions of high biomass accumulation.

Liver Transcriptome Changes in Zebrafish during Acclimation to Transport-Associated Stress

PubMed Central

Dhanasiri, Anusha K. S.; Fernandes, Jorge M. O.; Kiron, Viswanath

2013-01-01

Liver plays a key role during the stress acclimation, and liver transcriptome analysis of shipped zebrafish could reveal the molecular adjustments that occur in the organ. Transcriptional changes in liver were analyzed with a 44 K oligo array using total RNA from fish prior to transport and during a mock transport process - immediately after packing (0 h), at 48 and 72 h. Large numbers of genes related to a variety of biological processes and pathways were regulated, mainly during transport (at 48/72 h). Immediately after packing, transcripts of genes related to both gluconeogenesis and glycolysis were induced. During transport, induction of gluconeogenesis-linked genes and reduction of glycolysis-related genes may be supporting the increase in blood glucose levels. Inhibition of genes involved in fatty acid beta-oxidation may be pointing to the poor ability of fish to utilize energy from fatty acids, under transport conditions. Genes involved in some of the mechanisms that regulate body ammonia were also affected. Even though genes associated with certain transaminases were inhibited in liver, sustained glutamate deamination may have led to high ammonia accumulation in liver/body. Enhanced levels of gene transcripts in ubiquitination and MAPK signalling cascade and reduced levels of gene transcripts related to ROS generation via peroxisomal enzymes as well as xenobiotic metabolism may be signifying the importance of such cellular and tissue responses to maintain homeostasis. Furthermore, transcripts connected with stress and thyroid hormones were also regulated. Moreover, suppression of genes related to specific immune components may be denoting the deleterious impact of transport on fish health. Thus, this study has revealed the complex molecular -adjustments that occur in zebrafish when they are transported. PMID:23762281

The Dnieper River Aquatic System Radioactive Contamination; Long-tern Natural Attenuation And Remediation History

NASA Astrophysics Data System (ADS)

Voitsekhovych, Oleg; Laptev, Genadiy; Kanivets, Vladimir; Konoplev, Alexey

2013-04-01

Near 27 year passed after the Chernobyl Accident, and the experience gained to study radionuclide behavior in the aquatic systems and to mitigate water contamination are still pose of interest for scientists, society and regulatory austerities. There are different aspects of radionuclide transport in the environment were studied since the Chernobyl fallout in 1986 covered the river catchments, wetlands, river, lakes/reservoirs and reached the Black Sea. The monitoring time series data set and also data on the radionuclides behavior studies in the water bodies (river, lakes and the Black Sea) are available now in Ukraine and other affected countries. Its causation analyses, considering the main geochemical, physical and chemical and hydrological process, governing by radionuclide mobility and transport on the way from the initially contaminated catchments, through the river-reservoir hydrological system to the Black Sea can help in better understanding of the main factors governing be the radionuclide behavior in the environment. Radionuclide washout and its hydrological transport are determined speciation of radionuclides as well as soil types and hydrological mode and also geochemistry and landscape conditions at the affected areas. Mobility and bioavailability of radionuclides are determined by ratio of radionuclide chemical forms in fallout and site-specific environmental characteristics determining rates of leaching, fixation/remobilization as well as sorption-desorption of mobile fraction (its solid-liquid distribution). In many cases the natural attenuation processes governing by the above mentioned processes supported by water flow transportation and sedimentation played the key role in self-rehabilitation of the aquatic ecosystems. The models developed during post-Chernobyl decade and process parameters studies can help in monitoring and remediation programs planed for Fukusima Daichi affected watersheds areas as well. Some most important monitoring data collection results and experience gained during post-Chernobyl decades at the Dnieper River aquatic system are presented (catchments, river and reservoirs). This experience show that only information on radionuclide deposition levels is not enough for accurate predictions on radionuclide wash-out and transport in the hydrological systems. Data on speciation in fallout, rates of transformation processes and site-specific environmental characteristics determining these rates are needed. Information on radionuclide chemical forms, their transformation in other words mobility and bioavailability should be taken into account when rehabilitation and decontamination strategies are developed on local or regional scale. Number of inadequate water protection measures carried out during initial post-accidental period took place because lack of preparedness, data and decision making support tools were in use, Environmental radiation monitoring network has not been developed and huge impact of social stressing and inadequate risk perception took place. Many experimental data, models developed and experience for safe management at the contaminated watersheds and water bodies can be useful and in particular those, who dealing with consequences of Fucusima accident 2011. The paper gives extended overview and describes experience of authors in justification and evaluation of the remedial actions applied after Chernobyl accident with focus on most important lessons learned and potentially utilized in future.

Visualizing and quantifying difference in cytoplasmic and nuclear metabolism in the hepatobiliary system in vivo

NASA Astrophysics Data System (ADS)

Lin, Chih-Ju; Kang, Ning; Lee, Jian-Ye; Lee, Hsuan-Shu; Dong, Chen-Yuan

2015-01-01

The liver is a major organ responsible for performing xenobiotic metabolism. In this process, xenobiotic is uptaken and processed in hepatocytes and subsequently excreted into the bile canaliculi. However, the intracellular heterogeneity in such metabolic processes is not known. We use the molecular probe 6-carboxyfluorescein diacetate (6-CFDA) to investigate xenobiotic metabolism in hepatocytes with intravital multiphoton fluorescence microscopy. 6-CFDA is processed by intracellular esterase to fluorescent 6-CF, which can be imaged and quantified. We found that compared to the nucleus, cytoplasmic 6-CF fluorescence intensity reached a maximum earlier (cytoplasm: 11.3±4.4 min nucleus: 14.7±4.9 min) following 6-CFDA injection. We also found a slight difference in the rate of 6-CFDA metabolism as the rates of 6-CF decay at rates of 1.43±0.75 and 1.27±0.72 photons/min for the cytoplasm and nucleus, respectively. These results indicate that molecular transport to the nucleus is additionally hindered and can affect drug transport there.

Effect of irrigation regimes on mobilization of nonreactive tracers and dissolved and particulate phosphorus in slurry-injected soils

NASA Astrophysics Data System (ADS)

GlæSner, Nadia; Kjaergaard, Charlotte; RubæK, Gitte H.; Magid, Jakob

2011-12-01

Understanding the mobilization processes of phosphorus (P) in the plow layer are essential to quantify potential P losses and suggest management strategies to reduce P losses. This study is aimed at examining nonequilibrium exchange dynamics on the mobilization of slurry-amended Br-, and dissolved and particulate P in slurry-injected soils. We compared leaching from intact soil columns (20 cm diam., 20 cm high) under unsaturated flow (suction at the lower boundary of 5 hPa) subjected to continuous irrigation at 2 mm hr-1, and intermittent irrigation at 2 mm hr-1 and 10 mm hr-1 to with interruptions of 10 h duration simulate periodic precipitation events. Suction was increased to 20 hPa during interruptions to allow drainage of the largest pores. Irrigation interruptions induced fluctuations in leaching of nonreactive tracers, particles, and particulate P indicating nonequilibrium transport. A nonreactive tracer, 3H2O, applied with irrigation water, diffused from mobile to less mobile pore regions during interruptions, leading to a lower mass recovery during low-intermittent (76.4%) compared with continuous irrigation (86.6%). In contrast, mass recovery of slurry-injected Br- increased as Br- diffused from less mobile to mobile pore regions during low-intermittent (53%-64%) compared with continuous irrigation (42%-47%). Despite high fluctuations during the leaching of particles and particulate P during low-intermittent irrigation, accumulated values did not differ from continuous irrigation. Increased preferential flow during high-intermittent irrigation lowered the mass exchange between pore regions of nonreactive tracers, particles, and particulate P compared with low-intermittent irrigation. The leaching of dissolved inorganic and organic P was low during all of the experiments and scarcely affected by the irrigation regime. These results highlight that nonequilibrium exchange dynamics are important when evaluating processes affecting mobilization and transport in structured soils. Leaching experiments, including cycles of irrigation interruptions and gravitational drainage, thus, adds significantly to the understanding and interpretation of processes affecting mobilization and transport under natural conditions.

Spatial price dynamics: From complex network perspective

NASA Astrophysics Data System (ADS)

Li, Y. L.; Bi, J. T.; Sun, H. J.

2008-10-01

The spatial price problem means that if the supply price plus the transportation cost is less than the demand price, there exists a trade. Thus, after an amount of exchange, the demand price will decrease. This process is continuous until an equilibrium state is obtained. However, how the trade network structure affects this process has received little attention. In this paper, we give a evolving model to describe the levels of spatial price on different complex network structures. The simulation results show that the network with shorter path length is sensitive to the variation of prices.

Deformational mass transport and invasive processes in soil evolution

NASA Technical Reports Server (NTRS)

Brimhall, George H.; Chadwick, Oliver A.; Lewis, Chris J.; Compston, William; Williams, Ian S.; Danti, Kathy J.; Dietrich, William E.; Power, Mary E.; Hendricks, David; Bratt, James

1992-01-01

Channels left in soil by decayed roots and burrowing animals allow organic and inorganic precipitates and detritus to move through soil from above, to depths at which the minuteness of pores restricts further passage. Consecutive translocation-and-root-growth phases stir the soil, constituting an invasive, dilatational process which generates cumulative strains. Below the depths thus affected, mineral dissolution by descending organic acids leads to internal collapse; this softened/condensed precursor horizon is then transformed into soil via biological activity that mixes and expands the evolving residuum through root and micropore-network invasion.

The Impacts of Phosphorus Deficiency on the Photosynthetic Electron Transport Chain1[OPEN

PubMed Central

2018-01-01

Phosphorus (P) is an essential macronutrient, and P deficiency limits plant productivity. Recent work showed that P deficiency affects electron transport to photosystem I (PSI), but the underlying mechanisms are unknown. Here, we present a comprehensive biological model describing how P deficiency disrupts the photosynthetic machinery and the electron transport chain through a series of sequential events in barley (Hordeum vulgare). P deficiency reduces the orthophosphate concentration in the chloroplast stroma to levels that inhibit ATP synthase activity. Consequently, protons accumulate in the thylakoids and cause lumen acidification, which inhibits linear electron flow. Limited plastoquinol oxidation retards electron transport to the cytochrome b6f complex, yet the electron transfer rate of PSI is increased under steady-state growth light and is limited under high-light conditions. Under P deficiency, the enhanced electron flow through PSI increases the levels of NADPH, whereas ATP production remains restricted and, hence, reduces CO2 fixation. In parallel, lumen acidification activates the energy-dependent quenching component of the nonphotochemical quenching mechanism and prevents the overexcitation of photosystem II and damage to the leaf tissue. Consequently, plants can be severely affected by P deficiency for weeks without displaying any visual leaf symptoms. All of the processes in the photosynthetic machinery influenced by P deficiency appear to be fully reversible and can be restored in less than 60 min after resupply of orthophosphate to the leaf tissue. PMID:29540590

Methane gas seepage - Disregard of significant water column filter processes?

NASA Astrophysics Data System (ADS)

Schneider von Deimling, Jens; Schmale, Oliver

2016-04-01

Marine methane seepage represents a potential contributor for greenhouse gas in the atmosphere and is discussed as a driver for climate change. The ultimate question is how much methane is released from the seafloor on a global scale and what fraction may reach the atmosphere? Dissolved fluxes from methane seepage sites on the seabed were found to be very efficiently reduced by benthic microbial oxidation, whereas transport of free gas bubbles from the seabed is considered to bypass the effective benthic methane filter. Numerical models are available today to predict the fate of such methane gas bubble release to the water column in regard to gas exchange with the ambient water column, respective bubble lifetime and rise height. However, the fate of rising gas bubbles and dissolved methane in the water column is not only governed by dissolution, but is also affected by lateral oceanographic currents and vertical bubble-induced upwelling, microbial oxidation, and physico-chemical processes that remain poorly understood so far. According to this gap of knowledge we present data from two study sites - the anthropogenic North Sea 22/4b Blowout and the natural Coal Oil point seeps - to shed light into two new processes gathered with hydro-acoustic multibeam water column imaging and microbial investigations. The newly discovered processes are hereafter termed Spiral Vortex and Bubble Transport Mechanism. Spiral Vortex describes the evolution of a complex vortical fluid motion of a bubble plume in the wake of an intense gas release site (Blowout, North Sea). It appears very likely that it dramatically changes the dissolution kinetics of the seep gas bubbles. Bubble Transport Mechanism prescribes the transport of sediment-hosted bacteria into the water column via rising gas bubbles. Both processes act as filter mechanisms in regard to vertical transport of seep related methane, but have not been considered before. Spiral Vortex and Bubble Transport Mechanism represent the basis for a follow up research scheduled for August 2016 with the R/V POSEIDON with the aim to better constrain their mechanisms and to quantify their overall importance.

Analysing the mechanisms of soil water and vapour transport in the desert vadose zone of the extremely arid region of northern China

NASA Astrophysics Data System (ADS)

Du, Chaoyang; Yu, Jingjie; Wang, Ping; Zhang, Yichi

2018-03-01

The transport of water and vapour in the desert vadose zone plays a critical role in the overall water and energy balances of near-surface environments in arid regions. However, field measurements in extremely dry environments face many difficulties and challenges, so few studies have examined water and vapour transport processes in the desert vadose zone. The main objective of this study is to analyse the mechanisms of soil water and vapour transport in the desert vadose zone (depth of ∼350 cm) by using measured and modelled data in an extremely arid environment. The field experiments are implemented in an area of the Gobi desert in northwestern China to measure the soil properties, daily soil moisture and temperature, daily water-table depth and temperature, and daily meteorological records from DOYs (Days of Year) 114-212 in 2014 (growing season). The Hydrus-1D model, which simulates the coupled transport of water, vapour and heat in the vadose zone, is employed to simulate the layered soil moisture and temperature regimes and analyse the transport processes of soil water and vapour. The measured results show that the soil water and temperatures near the land surface have visible daily fluctuations across the entire soil profile. Thermal vapour movement is the most important component of the total water flux and the soil temperature gradient is the major driving factor that affects vapour transport in the desert vadose zone. The most active water and heat exchange occurs in the upper soil layer (depths of 0-25 cm). The matric potential change from the precipitation mainly re-draws the spatio-temporal distribution of the isothermal liquid water in the soil near the land surface. The matric potential has little effect on the isothermal vapour and thermal liquid water flux. These findings offer new insights into the liquid water and vapour movement processes in the extremely arid environment.

Effects of episodic sediment supply on bedload transport rate in mountain rivers. Detecting debris flow activity using continuous monitoring

NASA Astrophysics Data System (ADS)

Uchida, Taro; Sakurai, Wataru; Iuchi, Takuma; Izumiyama, Hiroaki; Borgatti, Lisa; Marcato, Gianluca; Pasuto, Alessandro

2018-04-01

Monitoring of sediment transport from hillslopes to channel networks as a consequence of floods with suspended and bedload transport, hyperconcentrated flows, debris and mud flows is essential not only for scientific issues, but also for prevention and mitigation of natural disasters, i.e. for hazard assessment, land use planning and design of torrent control interventions. In steep, potentially unstable terrains, ground-based continuous monitoring of hillslope and hydrological processes is still highly localized and expensive, especially in terms of manpower. In recent years, new seismic and acoustic methods have been developed for continuous bedload monitoring in mountain rivers. Since downstream bedload transport rate is controlled by upstream sediment supply from tributary channels and bed-external sources, continuous bedload monitoring might be an effective tool for detecting the sediments mobilized by debris flow processes in the upper catchment and thus represent an indirect method to monitor slope instability processes at the catchment scale. However, there is poor information about the effects of episodic sediment supply from upstream bed-external sources on downstream bedload transport rate at a single flood time scale. We have examined the effects of sediment supply due to upstream debris flow events on downstream bedload transport rate along the Yotagiri River, central Japan. To do this, we have conducted continuous bedload observations using a hydrophone (Japanese pipe microphone) located 6.4 km downstream the lower end of a tributary affected by debris flows. Two debris flows occurred during the two-years-long observation period. As expected, bedload transport rate for a given flow depth showed to be larger after storms triggering debris flows. That is, although the magnitude of sediment supply from debris flows is not large, their effect on bedload is propagating >6 km downstream at a single flood time scale. This indicates that continuous bedload observations could be effective for detecting sediment supply as a consequence of debris flow events.

Volcanic Ash Data Assimilation System for Atmospheric Transport Model

NASA Astrophysics Data System (ADS)

Ishii, K.; Shimbori, T.; Sato, E.; Tokumoto, T.; Hayashi, Y.; Hashimoto, A.

2017-12-01

The Japan Meteorological Agency (JMA) has two operations for volcanic ash forecasts, which are Volcanic Ash Fall Forecast (VAFF) and Volcanic Ash Advisory (VAA). In these operations, the forecasts are calculated by atmospheric transport models including the advection process, the turbulent diffusion process, the gravitational fall process and the deposition process (wet/dry). The initial distribution of volcanic ash in the models is the most important but uncertain factor. In operations, the model of Suzuki (1983) with many empirical assumptions is adopted to the initial distribution. This adversely affects the reconstruction of actual eruption plumes.We are developing a volcanic ash data assimilation system using weather radars and meteorological satellite observation, in order to improve the initial distribution of the atmospheric transport models. Our data assimilation system is based on the three-dimensional variational data assimilation method (3D-Var). Analysis variables are ash concentration and size distribution parameters which are mutually independent. The radar observation is expected to provide three-dimensional parameters such as ash concentration and parameters of ash particle size distribution. On the other hand, the satellite observation is anticipated to provide two-dimensional parameters of ash clouds such as mass loading, top height and particle effective radius. In this study, we estimate the thickness of ash clouds using vertical wind shear of JMA numerical weather prediction, and apply for the volcanic ash data assimilation system.

24-epibrassinolide and 20-hydroxyecdysone affect photosynthesis differently in maize and spinach.

PubMed

Rothová, Olga; Holá, Dana; Kočová, Marie; Tůmová, Lenka; Hnilička, František; Hniličková, Helena; Kamlar, Marek; Macek, Tomáš

2014-07-01

The aim of the work was to examine the effect of brassinosteroid (24-epibrassinolide; 24E) and ecdysteroid (20-hydroxyecdysone; 20E) on various parts of primary photosynthetic processes in maize and spinach. Additionally, the effect of steroids on gaseous exchange, pigment content and biomass accumulation was studied. The efficiency of the photosynthetic whole electron-transport chain responded negatively to the 24E or 20E treatment in both species, but there were interspecific differences regarding Photosystem (PS) II response. A positive effect on its oxygen-evolving complex and a slightly better energetical connectivity between PSII units were observed in maize whereas the opposite was true for spinach. The size of the pool of the PSI end electron acceptors was usually diminished due to 24E or 20E treatment. The treatment of plants with 24E or 20E applied individually positively influenced the content of photosynthetic pigments in maize (not in spinach). On the other hand, it did not affect gaseous exchange in maize but resulted in its reduction in spinach. Plants treated with combination of both steroids mostly did not significantly differ from the control plants. We have demonstrated for the first time that 20E applied in low (10nM) concentration can affect various parts of photosynthetic processes similarly to 24E and that brassinosteroids regulate not only PSII but also other parts of the photosynthetic electron transport chain - but not necessarily in the same way. Copyright © 2014 Elsevier Inc. All rights reserved.

Effect of electron-electron scattering on the conductance of a quantum wire studied with the Boltzman transport equation

NASA Astrophysics Data System (ADS)

Lyo, S. K.; Huang, Danhong

2006-05-01

Electron-electron scattering conserves total momentum and does not dissipate momentum directly in a low-density system where the umklapp process is forbidden. However, it can still affect the conductance through the energy relaxation of the electrons. We show here that this effect can be studied with arbitrary accuracy in a multisublevel one-dimensional (1D) single quantum wire system in the presence of roughness and phonon scattering using a formally exact solution of the Boltzmann transport equation. The intrasubband electron-electron scattering is found to yield no net effect on the transport of electrons in 1D with only one sublevel occupied. For a system with a multilevel occupation, however, we find a significant effect of intersublevel electron-electron scattering on the temperature and density dependence of the resistance at low temperatures.

Overexpression of 3β-hydroxysteroid dehydrogenases/C-4 decarboxylases causes growth defects possibly due to abnormal auxin transport in Arabidopsis.

PubMed

Kim, Bokyung; Kim, Gyusik; Fujioka, Shozo; Takatsuto, Suguru; Choe, Sunghwa

2012-07-01

Sterols play crucial roles as membrane components and precursors of steroid hormones (e.g., brassinosteroids, BR). Within membranes, sterols regulate membrane permeability and fluidity by interacting with other lipids and proteins. Sterols are frequently enriched in detergent-insoluble membranes (DIMs), which organize molecules involved in specialized signaling processes, including auxin transporters. To be fully functional, the two methyl groups at the C-4 position of cycloartenol, a precursor of plant sterols, must be removed by bifunctional 3β-hydroxysteroid dehydrogenases/C-4 decarboxylases (3βHSD/D). To understand the role of 3βHSD/D in Arabidopsis development, we analyzed the phenotypes of knock-out mutants and overexpression lines of two 3βHSD/D genes (At1g47290 and At2g26260). Neither single nor double knock-out mutants displayed a noticeable phenotype; however, overexpression consistently resulted in plants with wrinkled leaves and short inflorescence internodes. Interestingly, the internode growth defects were opportunistic; even within a plant, some stems were more severely affected than others. Endogenous levels of BRs were not altered in the overexpression lines, suggesting that the growth defect is not primarily due to a flaw in BR biosynthesis. To determine if overexpression of the sterol biosynthetic genes affects the functions of membrane-localized auxin transporters, we subjected plants to the auxin efflux carrier inhibitor, 1-N-naphthylphthalamic acid (NPA). Where-as the gravity vectors of wild-type roots became randomly scattered in response to NPA treatment, those of the overexpression lines continued to grow in the direction of gravity. Overexpression of the two Arabidopsis 3βHSD/D genes thus appears to affect auxin transporter activity, possibly by altering sterol composition in the membranes.

Body Weight Changes of Laboratory Animals during Transportation

PubMed Central

Lee, Sunghak; Nam, Hyunsik; Kim, Jinsung; Cho, Hyejung; Jang, Yumi; Lee, Eunjung; Choi, Eunsung; Jin, Dong Il; Moon, Hongsik

2012-01-01

The majority of laboratory animals were transported from commercial breeders to a research facility by ground transportation. During the transportation, many biological functions and systems can be affected by stress. In this experiment, the change of body weight during the transportation was measured and the recovery periods from the transportation stress established based on the body weight changes. Total 676 laboratory animals which were aged between 3 to 9 wk old were studied. The transportation time taken from container packing to unpacking the container was approximately 24 h. The temperature of animal container was constantly maintained by air-conditioning and heating equipment. Rats were found to be more sensitive than mice. The body weight of rats was significantly decreased 3.71% (p<0.05) compared to the body weight of mice which decreased 0.9% There was no significant difference between the strains in the same species. When the changes of body weights were compared between delivery days, C57BL/6 mice showed the most variable changes compared to other species and strains. Consequently, C57BL/6 was more sensitive to stress than the other strains and the transportation process needs to be standardized to reduce between day variability. To establish the recovery periods from transportation stress, the body weight changes were measured during the acclimation period. Although the body weight of animals decreased during transportation, animals recovered their weight loss after the next day. PMID:25049564

Silver Nanoparticle Transport and Interactions in Partially Saturated Sand and Soil

NASA Astrophysics Data System (ADS)

Yecheskel, Y.; Dror, I.; Berkowitz, B.

2016-12-01

The growing applications of engineered nanoparticles (ENPs), included in numerous products and industrial processes, are expected to spread in the near future on a global level. Along with the properties that make ENPs so appealing, the concern that they may act as a new class of persistent and toxic contaminants also arises. The post-use release of ENPs to the environment is inevitable and soil appears to be one of the largest sinks of these potential contaminants. To date, despite the significant attention that ENP behavior in the environment has received, only a few studies have considered the fate and transport of ENPs in partially saturated systems. In this study, we focus on the transport and fate of silver NPs (Ag-NPs) in partially saturated sand and soil columns. Experimental results reveal significant differences between sand and soil with respect to ENP transport, and emphasize the importance of employing natural porous media in experiments. Breakthrough curves (BTCs), retention profiles, ENP mass balance and modeling were applied to characterize Ag-NP transport and gain insights into the mechanisms of retardation. The effect of initial Ag-NP concentration, Ag-NP size, saturation level, flow rate, and solution chemistry were found to affect Ag-NP transport behavior. Unlike transport of Ag-NP in sand columns, where the BTC pattern resembles that of a conservative tracer, Ag-NP transport in soil columns shows moderate mobility and complex BTC patterns. In general, the BTC shape consists of two steps, which imply two retention mechanisms. The influence of each mechanism is affected by the physicochemical conditions. In all cases, a two kinetic site model was shown to fit the experimental BTC results, with time-dependent and depth-dependent attachment-detachment mechanisms. Overall, Ag-NP mobility decreases with the presence of Ca2+ and Cl- ions, and increases with the presence of humic acid, increased saturation levels, and higher input concentrations of Ag-NPs.

Water-quality monitoring and process understanding in support of environmental policy and management

USGS Publications Warehouse

Peters, N.E.

2008-01-01

The quantity and quality of freshwater at any point on the landscape reflect the combined effects of many processes operating along hydrological pathways within a drainage basin/watershed/catchment. Primary drivers for the availability of water are landscape changes and patterns, and the processes affecting the timing, magnitude, and intensity of precipitation, including global climate change. The degradation of air, land, and water in one part of a drainage basin can have negative effects on users downstream; the time and space scales of the effects are determined by the residence time along the various hydrological pathways. Hydrology affects transport, deposition, and recycling of inorganic materials and sediment. These components affect biota and associated ecosystem processes, which rely on sustainable flows throughout a drainage basin. Human activities on all spatial scales affect both water quantity and quality, and some human activities can have a disproportionate effect on an entire drainage basin. Aquatic systems have been continuously modified by agriculture, through land-use change, irrigation and navigation, disposal of urban, mining, and industrial wastes, and engineering modifications to the environment. Interdisciplinary integrated basin studies within the last several decades have provided a more comprehensive understanding of the linkages among air, land, and water resources. This understanding, coupled with environmental monitoring, has evolved a more multidisciplinary integrated approach to resource management, particularly within drainage basins.

Nonpoint source solute transport normal to aquifer bedding in heterogeneous, Markov chain random fields

NASA Astrophysics Data System (ADS)

Zhang, Hua; Harter, Thomas; Sivakumar, Bellie

2006-06-01

Facies-based geostatistical models have become important tools for analyzing flow and mass transport processes in heterogeneous aquifers. Yet little is known about the relationship between these latter processes and the parameters of facies-based geostatistical models. In this study, we examine the transport of a nonpoint source solute normal (perpendicular) to the major bedding plane of an alluvial aquifer medium that contains multiple geologic facies, including interconnected, high-conductivity (coarse textured) facies. We also evaluate the dependence of the transport behavior on the parameters of the constitutive facies model. A facies-based Markov chain geostatistical model is used to quantify the spatial variability of the aquifer system's hydrostratigraphy. It is integrated with a groundwater flow model and a random walk particle transport model to estimate the solute traveltime probability density function (pdf) for solute flux from the water table to the bottom boundary (the production horizon) of the aquifer. The cases examined include two-, three-, and four-facies models, with mean length anisotropy ratios for horizontal to vertical facies, ek, from 25:1 to 300:1 and with a wide range of facies volume proportions (e.g., from 5 to 95% coarse-textured facies). Predictions of traveltime pdfs are found to be significantly affected by the number of hydrostratigraphic facies identified in the aquifer. Those predictions of traveltime pdfs also are affected by the proportions of coarse-textured sediments, the mean length of the facies (particularly the ratio of length to thickness of coarse materials), and, to a lesser degree, the juxtapositional preference among the hydrostratigraphic facies. In transport normal to the sedimentary bedding plane, traveltime is not lognormally distributed as is often assumed. Also, macrodispersive behavior (variance of the traveltime) is found not to be a unique function of the conductivity variance. For the parameter range examined, the third moment of the traveltime pdf varies from negatively skewed to strongly positively skewed. We also show that the Markov chain approach may give significantly different traveltime distributions when compared to the more commonly used Gaussian random field approach, even when the first- and second-order moments in the geostatistical distribution of the lnK field are identical. The choice of the appropriate geostatistical model is therefore critical in the assessment of nonpoint source transport, and uncertainty about that choice must be considered in evaluating the results.

Role of Hydrodynamic and Mineralogical Heterogeneities on Reactive Transport Processes.

NASA Astrophysics Data System (ADS)

Luquot, L.; Garcia-Rios, M.; soler Sagarra, J.; Gouze, P.; Martinez-Perez, L.; Carrera, J.

2017-12-01

Predicting reactive transport at large scale, i.e., Darcy- and field- scale, is still challenging considering the number of heterogeneities that may be present from nm- to pore-scale. It is well documented that conventional continuum-scale approaches oversimplify and/or ignore many important aspects of rock structure, chemical reactions, fluid displacement and transport, which, as a consequence, results in uncertainties when applied to field-scale operations. The changes in flow and reactive transport across the different spatial and temporal scales are of central concern in many geological applications such as groundwater systems, geo-energy, rock building heritage and geological storage... In this presentation, we will discuss some laboratory and numerical results on how local heterogeneities (structural, hydrodynamic and mineralogical) can affect the localization and the rate of the reaction processes. Different flow through laboratory experiments using various rock samples will be presented, from simple monomineral rocks such as limestone samples, and more complex rocks composed of different minerals with a large range of kinetic reactions. A new numerical approach based on multirate water mixing approach will be presented and applied to one of the laboratory experiment in order to analyze and distinguish the effect of the mineralogy distribution and the hydrodynamic heterogeneity on the total reaction rate.

One-Dimensional Transport with Inflow and Storage (OTIS): A Solute Transport Model for Streams and Rivers

USGS Publications Warehouse

Runkel, Robert L.

1998-01-01

OTIS is a mathematical simulation model used to characterize the fate and transport of water-borne solutes in streams and rivers. The governing equation underlying the model is the advection-dispersion equation with additional terms to account for transient storage, lateral inflow, first-order decay, and sorption. This equation and the associated equations describing transient storage and sorption are solved using a Crank-Nicolson finite-difference solution. OTIS may be used in conjunction with data from field-scale tracer experiments to quantify the hydrologic parameters affecting solute transport. This application typically involves a trial-and-error approach wherein parameter estimates are adjusted to obtain an acceptable match between simulated and observed tracer concentrations. Additional applications include analyses of nonconservative solutes that are subject to sorption processes or first-order decay. OTIS-P, a modified version of OTIS, couples the solution of the governing equation with a nonlinear regression package. OTIS-P determines an optimal set of parameter estimates that minimize the squared differences between the simulated and observed concentrations, thereby automating the parameter estimation process. This report details the development and application of OTIS and OTIS-P. Sections of the report describe model theory, input/output specifications, sample applications, and installation instructions.

Interface Energetics and Chemical Doping of Organic Electronic Materials

NASA Astrophysics Data System (ADS)

Kahn, Antoine

2014-03-01

The energetics of organic semiconductors and their interfaces are central to the performance of organic thin film devices. The relative positions of charge transport states across the many interfaces of multi-layer OLEDs, OPV cells and OFETs determine in great part the efficiency and lifetime of these devices. New experiments are presented here, that look in detail at the position of these transport states and associated gap states and electronic traps that tail into the energy gap of organic molecular (e.g. pentacene) or polymer (P3HT, PBDTTT-C) semiconductors, and which directly affect carrier mobility in these materials. Disorder, sometime caused by simple exposure to an inert gas, impurities and defects are at the origin of these electronic gap states. Recent efforts in chemical doping in organic semiconductors aimed at mitigating the impact of electronic gap states are described. An overview of the reducing or oxidizing power of several n- and p-type dopants for vacuum- or solution-processed films, and their effect on the electronic structure and conductivity of both vacuum- and solution-processed organic semiconductor films is given. Finally, the filling (compensation) of active gap states via doping is investigated on the electron-transport materials C60 and P(NDI2OD-T2) , and the hole-transport polymer PBDTTT-C.

Impact of aircraft NO x emission on NO x and ozone over China

NASA Astrophysics Data System (ADS)

Liu, Yu; Isaksen, I. S. A.; Sundet, J. K.; Zhou, Xiuji; Ma, Jianzhong

2003-07-01

A three-dimensional global chemistry transport model (OSLO CTM2) is used to investigate the impact of subsonic aircraft NO x emission on NO x and ozone over China in terms of a year 2000 scenario of subsonic aircraft NO x emission. The results show that subsonic aircraft NO x emission significantly affects northern China, which makes NO x at 250 hPa increase by about 50 pptv with the highest percentage of 60% in January, and leading to an ozone increase of 8 ppbv with 5% relative change in April. The NO x increase is mainly attributed to the transport process, but ozone increase is produced by the chemical process. The NO x increases by less than 10 pptv by virtue of subsonic aircraft NO x emission over China, and ozone changes less than 0.4 ppbv. When subsonic aircraft NO x emission over China is doubled, its influence is still relatively small.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meusel, O., E-mail: o.meusel@iap.uni-frankfurt.de; Droba, M.; Noll, D.

The transport of intense ion beams is affected by the collective behavior of this kind of multi-particle and multi-species system. The space charge expressed by the generalized perveance dominates the dynamical process of thermalisation, which leads to emittance growth. To prevent changes of intrinsic beam properties and to reduce the intensity dependent focusing forces, space charge compensation seems to be an adequate solution. In the case of positively charged ion beams, electrons produced by residual gas ionization and secondary electrons provide the space charge compensation. The influence of the compensation particles on the beam transport and the local degree ofmore » space charge compensation is given by different beam properties as well as the ion beam optics. Especially for highly charged ion beams, space charge compensation in combination with poor vacuum conditions leads to recombination processes and therefore increased beam losses. Strategies for providing a compensation-electron reservoir at very low residual gas pressures will be discussed.« less

Evaluation of the applicability of the dual‐domain mass transfer model in porous media containing connected high‐conductivity channels

USGS Publications Warehouse

Liu, Gaisheng; Zheng, Chunmiao; Gorelick, Steven M.

2007-01-01

This paper evaluates the dual‐domain mass transfer (DDMT) model to represent transport processes when small‐scale high‐conductivity (K) preferential flow paths (PFPs) are present in a homogenous porous media matrix. The effects of PFPs upon solute transport were examined through detailed numerical experiments involving different realizations of PFP networks, PFP/matrix conductivity contrasts varying from 10:1 to 200:1, different magnitudes of effective conductivities, and a range of molecular diffusion coefficients. Results suggest that the DDMT model can reproduce both the near‐source peak and the downstream low‐concentration spreading observed in the embedded dendritic network when there are large conductivity contrasts between high‐K PFPs and the low‐K matrix. The accuracy of the DDMT model is also affected by the geometry of PFP networks and by the relative significance of the diffusion process in the network‐matrix system.

Stochastic dynamics of coupled active particles in an overdamped limit

NASA Astrophysics Data System (ADS)

Ann, Minjung; Lee, Kong-Ju-Bock; Park, Pyeong Jun

2015-10-01

We introduce a model for Brownian dynamics of coupled active particles in an overdamped limit. Our system consists of several identical active particles and one passive particle. Each active particle is elastically coupled to the passive particle and there is no direct coupling among the active particles. We investigate the dynamics of the system with respect to the number of active particles, viscous friction, and coupling between the active and passive particles. For this purpose, we consider an intracellular transport process as an application of our model and perform a Brownian dynamics simulation using realistic parameters for processive molecular motors such as kinesin-1. We determine an adequate energy conversion function for molecular motors and study the dynamics of intracellular transport by multiple motors. The results show that the average velocity of the coupled system is not affected by the number of active motors and that the stall force increases linearly as the number of motors increases. Our results are consistent with well-known experimental observations. We also examine the effects of coupling between the motors and the cargo, as well as of the spatial distribution of the motors around the cargo. Our model might provide a physical explanation of the cooperation among active motors in the cellular transport processes.

Multi-objective route planning for dangerous goods using compromise programming

NASA Astrophysics Data System (ADS)

Li, Rongrong; Leung, Yee

2011-09-01

The transportation of dangerous goods (DG) can significantly affect the human and natural environment if accidents occur during the transportation process. Hong Kong is a large city with high population density and narrow streets. Due to the land constraints, vehicles carrying DG inevitably have to pass through densely populated areas or their vicinities. Therefore, safe DG transportation is of paramount importance. There is thus an urgent need to review and improve the way trucks carrying DG are being routed on the road networks. Routing of such vehicles should consider not only the operating cost, but also the safety of travelers in the network, the population potentially exposed, and the possible damage inflicted to the surrounding properties and facilities in the event of a DG incident. This research develops a novel methodology for the determination of optimal routes for DG transportation under conflicting objectives by means of the compromise programming approach. With the support of geographical information system (GIS), a case study is carried out for the transportation of DG in the road network of Hong Kong. The experimental results confirm the effectiveness of the proposed approach.

Crew systems and flight station concepts for a 1995 transport aircraft

NASA Technical Reports Server (NTRS)

Sexton, G. A.

1983-01-01

Aircraft functional systems and crew systems were defined for a 1995 transport aircraft through a process of mission analysis, preliminary design, and evaluation in a soft mockup. This resulted in a revolutionary pilot's desk flight station design featuring an all-electric aircraft, fly-by-wire/light flight and thrust control systems, large electronic color head-down displays, head-up displays, touch panel controls for aircraft functional systems, voice command and response systems, and air traffic control systems projected for the 1990s. The conceptual aircraft, for which crew systems were designed, is a generic twin-engine wide-body, low-wing transport, capable of worldwide operation. The flight control system consists of conventional surfaces (some employed in unique ways) and new surfaces not used on current transports. The design will be incorporated into flight simulation facilities at NASA-Langley, NASA-Ames, and the Lockheed-Georgia Company. When interfaced with advanced air traffic control system models, the facilities will provide full-mission capability for researching issues affecting transport aircraft flight stations and crews of the 1990s.

Sharing is Caring: The Role of Actin/Myosin-V in Synaptic Vesicle Transport between Synapses in vivo

NASA Astrophysics Data System (ADS)

Gramlich, Michael

Inter-synaptic vesicle sharing is an important but not well understood process of pre-synaptic function. Further, the molecular mechanisms that underlie this inter-synaptic exchange are not well known, and whether this inter-synaptic vesicle sharing is regulated by neural activity remains largely unexplored. I address these questions by studying CA1/CA3 Hippocampal neurons at the single synaptic vesicle level. Using high-resolution tracking of individual vesicles that have recently undergone endocytosis, I observe long-distance axonal transport of synaptic vesicles is partly mediated by the actin network. Further, the actin-dependent transport is predominantly carried out by Myosin-V. I develop a correlated-motion analysis to characterize the mechanics of how actin and Myosin-V affect vesicle transport. Lastly, I also observe that vesicle exit rates from the synapse to the axon and long-distance vesicle transport are both regulated by activity, but Myosin-V does not appear to mediate the activity dependence. These observations highlight the roles of the axonal actin network, and Myosin-V in particular, in regulating inter-synaptic vesicle exchange.

A Lagrangian stochastic model for aerial spray transport above an oak forest

USGS Publications Warehouse

Wang, Yansen; Miller, David R.; Anderson, Dean E.; McManus, Michael L.

1995-01-01

An aerial spray droplets' transport model has been developed by applying recent advances in Lagrangian stochastic simulation of heavy particles. A two-dimensional Lagrangian stochastic model was adopted to simulate the spray droplet dispersion in atmospheric turbulence by adjusting the Lagrangian integral time scale along the drop trajectory. The other major physical processes affecting the transport of spray droplets above a forest canopy, the aircraft wingtip vortices and the droplet evaporation, were also included in each time step of the droplets' transport.The model was evaluated using data from an aerial spray field experiment. In generally neutral stability conditions, the accuracy of the model predictions varied from run-to-run as expected. The average root-mean-square error was 24.61 IU cm−2, and the average relative error was 15%. The model prediction was adequate in two-dimensional steady wind conditions, but was less accurate in variable wind condition. The results indicated that the model can simulate successfully the ensemble; average transport of aerial spray droplets under neutral, steady atmospheric wind conditions.

Morphology and mixing state of atmospheric particles: Links to optical properties and cloud processing

NASA Astrophysics Data System (ADS)

China, Swarup

Atmospheric particles are ubiquitous in Earth's atmosphere and impact the environment and the climate while affecting human health and Earth's radiation balance, and degrading visibility. Atmospheric particles directly affect our planet's radiation budget by scattering and absorbing solar radiation, and indirectly by interacting with clouds. Single particle morphology (shape, size and internal structure) and mixing state (coating by organic and inorganic material) can significantly influence the particle optical properties as well as various microphysical processes, involving cloud-particle interactions and including heterogeneous ice nucleation and water uptake. Conversely, aerosol cloud processing can affect the morphology and mixing of the particles. For example, fresh soot has typically an open fractal-like structure, but aging and cloud processing can restructure soot into more compacted shapes, with different optical and ice nucleation properties. During my graduate research, I used an array of electron microscopy and image analysis tools to study morphology and mixing state of a large number of individual particles collected during several field and laboratory studies. To this end, I investigated various types of particles such as tar balls (spherical carbonaceous particles emitted during biomass burning) and dust particles, but with a special emphasis on soot particles. In addition, I used the Stony Brook ice nucleation cell facility to investigate heterogeneous ice nucleation and water uptake by long-range transported particles collected at the Pico Mountain Observatory, in the Archipelago of the Azores. Finally, I used ice nucleation data from the SAAS (Soot Aerosol Aging Study) chamber study at the Pacific Northwest National Laboratory to understand the effects that ice nucleation and supercooled water processing has on the morphology of residual soot particles. Some highlights of our findings and implications are discussed next. We found that the morphology of fresh soot emitted by vehicles depends on the driving conditions (i.e.; the vehicle specific power). Soot emitted by biomass burning is often heavily coated by other materials while processing of soot in urban environment exhibits complex mixing. We also found that long-range transported soot over the ocean after atmospheric processing is very compacted. In addition, our results suggest that freezing process can facilitate restructuring of soot and results into collapsed soot. Furthermore, numerical simulations showed strong influence on optical properties when fresh open fractal-like soot evolved to collapsed soot. Further investigation of long-range transported aged particles exhibits that they are efficient in water uptake and can induce ice nucleation in colder temperature. Our results have implications for assessing the impact of the morphology and mixing state of soot particles on human health, environment and climate. Our findings can provide guidance to numerical models such as particle-resolved mixing state models to account for, and better understand, vehicular emissions and soot evolution since its emission to atmospheric processing in urban environment and finally in remote regions after long-range transport. Morphology and mixing state information can be used to model observational-constrained optical properties. The details of morphology and mixing state of soot particles are crucial to assess the accuracy of climate models in describing the contribution of soot radiative forcing and their direct and indirect climate effects. Finally, our observations of ice nucleation ability by aged particles show that nucleated particles are internally mixed and coated with several materials.

Correlation Imaging Reveals Specific Crowding Dynamics of Kinesin Motor Proteins

NASA Astrophysics Data System (ADS)

Miedema, Daniël M.; Kushwaha, Vandana S.; Denisov, Dmitry V.; Acar, Seyda; Nienhuis, Bernard; Peterman, Erwin J. G.; Schall, Peter

2017-10-01

Molecular motor proteins fulfill the critical function of transporting organelles and other building blocks along the biopolymer network of the cell's cytoskeleton, but crowding effects are believed to crucially affect this motor-driven transport due to motor interactions. Physical transport models, like the paradigmatic, totally asymmetric simple exclusion process (TASEP), have been used to predict these crowding effects based on simple exclusion interactions, but verifying them in experiments remains challenging. Here, we introduce a correlation imaging technique to precisely measure the motor density, velocity, and run length along filaments under crowding conditions, enabling us to elucidate the physical nature of crowding and test TASEP model predictions. Using the kinesin motor proteins kinesin-1 and OSM-3, we identify crowding effects in qualitative agreement with TASEP predictions, and we achieve excellent quantitative agreement by extending the model with motor-specific interaction ranges and crowding-dependent detachment probabilities. These results confirm the applicability of basic nonequilibrium models to the intracellular transport and highlight motor-specific strategies to deal with crowding.

Role of solute-transport models in the analysis of groundwater salinity problems in agricultural areas

USGS Publications Warehouse

Konikow, Leonard F.

1981-01-01

Undesirable salinity increases occur in both groundwater and surface water and are commonly related to agricultural practices. Groundwater recharge from precipitation or irrigation will transport and disperse residual salts concentrated by evapotranspiration, salts leached from soil and aquifer materials, as well as some dissolved fertilizers and pesticides. Where stream salinity is affected by agricultural practices, the increases in salt load usually are attributable mostly to a groundwater component of flow. Thus, efforts to predict, manage, or control stream salinity increases should consider the role of groundwater in salt transport. Two examples of groundwater salinity problems in Colorado, U.S.A., illustrate that a model which simulates accurately the transport and dispersion of solutes in flowing groundwater can be (1) a valuable investigative tool to help understand the processes and parameters controlling the movement and fate of the salt, and (2) a valuable management tool for predicting responses and optimizing the development and use of the total water resource. ?? 1981.

A FYVE zinc finger domain protein specifically links mRNA transport to endosome trafficking.

PubMed

Pohlmann, Thomas; Baumann, Sebastian; Haag, Carl; Albrecht, Mario; Feldbrügge, Michael

2015-05-18

An emerging theme in cellular logistics is the close connection between mRNA and membrane trafficking. A prominent example is the microtubule-dependent transport of mRNAs and associated ribosomes on endosomes. This coordinated process is crucial for correct septin filamentation and efficient growth of polarised cells, such as fungal hyphae. Despite detailed knowledge on the key RNA-binding protein and the molecular motors involved, it is unclear how mRNAs are connected to membranes during transport. Here, we identify a novel factor containing a FYVE zinc finger domain for interaction with endosomal lipids and a new PAM2-like domain required for interaction with the MLLE domain of the key RNA-binding protein. Consistently, loss of this FYVE domain protein leads to specific defects in mRNA, ribosome, and septin transport without affecting general functions of endosomes or their movement. Hence, this is the first endosomal component specific for mRNP trafficking uncovering a new mechanism to couple mRNPs to endosomes.

Can Video Self-Modeling Improve Affected Limb Reach and Grasp Ability in Stroke Patients?

PubMed

Steel, Kylie Ann; Mudie, Kurt; Sandoval, Remi; Anderson, David; Dogramaci, Sera; Rehmanjan, Mohammad; Birznieks, Ingvars

2018-01-01

The authors examined whether feedforward video self-modeling (FF VSM) would improve control over the affected limb, movement self-confidence, movement self-consciousness, and well-being in 18 stroke survivors. Participants completed a cup transport task and 2 questionnaires related to psychological processes pre- and postintervention. Pretest video footage of the unaffected limb performing the task was edited to create a best-of or mirror-reversed training DVD, creating the illusion that patients were performing proficiently with the affected limb. The training yielded significant improvements for the forward movement of the affected limb compared to the unaffected limb. Significant improvements were also seen in movement self-confidence, movement self-consciousness, and well-being. FF VSM appears to be a viable way to improve motor ability in populations with movement disorders.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moll, Ryan; Garaud, Pascale, E-mail: rmoll@soe.ucsc.edu

Oscillatory double-diffusive convection (ODDC, more traditionally called semiconvection) is a form of linear double-diffusive instability that occurs in fluids that are unstably stratified in temperature (Schwarzschild unstable), but stably stratified in chemical composition (Ledoux stable). This scenario is thought to be quite common in the interiors of stars and giant planets, and understanding the transport of heat and chemical species by ODDC is of great importance to stellar and planetary evolution models. Fluids unstable to ODDC have a tendency to form convective thermocompositional layers that significantly enhance the fluxes of temperature and chemical composition compared with microscopic diffusion. Although a numbermore » of recent studies have focused on studying properties of both layered and nonlayered ODDC, few have addressed how additional physical processes such as global rotation affect its dynamics. In this work, we study first how rotation affects the linear stability properties of rotating ODDC. Using direct numerical simulations, we then analyze the effect of rotation on properties of layered and nonlayered ODDC, and we study how the angle of the rotation axis with respect to the direction of gravity affects layering. We find that rotating systems can be broadly grouped into two categories based on the strength of rotation. The qualitative behavior in the more weakly rotating group is similar to nonrotating ODDC, but strongly rotating systems become dominated by vortices that are invariant in the direction of the rotation vector and strongly influence transport. We find that whenever layers form, rotation always acts to reduce thermal and compositional transport.« less

The Effect of Rotation on Oscillatory Double-diffusive Convection (Semiconvection)

NASA Astrophysics Data System (ADS)

Moll, Ryan; Garaud, Pascale

2017-01-01

Oscillatory double-diffusive convection (ODDC, more traditionally called semiconvection) is a form of linear double-diffusive instability that occurs in fluids that are unstably stratified in temperature (Schwarzschild unstable), but stably stratified in chemical composition (Ledoux stable). This scenario is thought to be quite common in the interiors of stars and giant planets, and understanding the transport of heat and chemical species by ODDC is of great importance to stellar and planetary evolution models. Fluids unstable to ODDC have a tendency to form convective thermocompositional layers that significantly enhance the fluxes of temperature and chemical composition compared with microscopic diffusion. Although a number of recent studies have focused on studying properties of both layered and nonlayered ODDC, few have addressed how additional physical processes such as global rotation affect its dynamics. In this work, we study first how rotation affects the linear stability properties of rotating ODDC. Using direct numerical simulations, we then analyze the effect of rotation on properties of layered and nonlayered ODDC, and we study how the angle of the rotation axis with respect to the direction of gravity affects layering. We find that rotating systems can be broadly grouped into two categories based on the strength of rotation. The qualitative behavior in the more weakly rotating group is similar to nonrotating ODDC, but strongly rotating systems become dominated by vortices that are invariant in the direction of the rotation vector and strongly influence transport. We find that whenever layers form, rotation always acts to reduce thermal and compositional transport.

The Coupled Mars Dust and Water Cycles: Understanding How Clouds Affect the Vertical Distribution and Meridional Transport of Dust and Water.

NASA Technical Reports Server (NTRS)

Kahre, M. A.

2015-01-01

The dust and water cycles are crucial to the current Martian climate, and they are coupled through cloud formation. Dust strongly impacts the thermal structure of the atmosphere and thus greatly affects atmospheric circulation, while clouds provide radiative forcing and control the hemispheric exchange of water through the modification of the vertical distributions of water and dust. Recent improvements in the quality and sophistication of both observations and climate models allow for a more comprehensive understanding of how the interaction between the dust and water cycles (through cloud formation) affects the dust and water cycles individually. We focus here on the effects of clouds on the vertical distribution of dust and water, and how those vertical distributions control the net meridional transport of water. For this study, we utilize observations of temperature, dust and water ice from the Mars Climate Sounder (MCS) on the Mars Reconnaissance Orbiter (MRO) combined with the NASA ARC Mars Global Climate Model (MGCM). We demonstrate that the magnitude and nature of the net meridional transport of water between the northern and southern hemispheres during NH summer is sensitive to the vertical structure of the simulated aphelion cloud belt. We further examine how clouds influence the atmospheric thermal structure and thus the vertical structure of the cloud belt. Our goal is to identify and understand the importance of radiative/dynamic feedbacks due to the physical processes involved with cloud formation and evolution on the current climate of Mars.

Solar coronal loop heating by cross-field wave transport

NASA Technical Reports Server (NTRS)

Amendt, Peter; Benford, Gregory

1989-01-01

Solar coronal arches heated by turbulent ion-cyclotron waves may suffer significant cross-field transport by these waves. Nonlinear processes fix the wave-propagation speed at about a tenth of the ion thermal velocity, which seems sufficient to spread heat from a central core into a large cool surrounding cocoon. Waves heat cocoon ions both through classical ion-electron collisions and by turbulent stochastic ion motions. Plausible cocoon sizes set by wave damping are in roughly kilometers, although the wave-emitting core may be only 100 m wide. Detailed study of nonlinear stabilization and energy-deposition rates predicts that nearby regions can heat to values intermediate between the roughly electron volt foot-point temperatures and the about 100 eV core, which is heated by anomalous Ohmic losses. A volume of 100 times the core volume may be affected. This qualitative result may solve a persistent problem with current-driven coronal heating; that it affects only small volumes and provides no way to produce the extended warm structures perceptible to existing instruments.

Changing the thickness of two layers: i-ZnO nanorods, p-Cu2O and its influence on the carriers transport mechanism of the p-Cu2O/i-ZnO nanorods/n-IGZO heterojunction.

PubMed

Ke, Nguyen Huu; Trinh, Le Thi Tuyet; Phung, Pham Kim; Loan, Phan Thi Kieu; Tuan, Dao Anh; Truong, Nguyen Huu; Tran, Cao Vinh; Hung, Le Vu Tuan

2016-01-01

In this study, two layers: i-ZnO nanorods and p-Cu2O were fabricated by electrochemical deposition. The fabricating process was the initial formation of ZnO nanorods layer on the n-IGZO thin film which was prepared by sputtering method, then a p-Cu2O layer was deposited on top of rods to form the p-Cu2O/i-ZnO nanorods/n-ZnO heterojunction. The XRD, SEM, UV-VIS, I-V characteristics methods were used to define structure, optical and electrical properties of these heterojunction layers. The fabricating conditions and thickness of the Cu2O layers significantly affected to the formation, microstructure, electrical and optical properties of the junction. The length of i-ZnO nanorods layer in the structure of the heterojunction has strongly affected to the carriers transport mechanism and performance of this heterojunction.

Biological consequences of relocating grizzly bears in the Yellowstone ecosystem

USGS Publications Warehouse

Blanchard, Bonnie M.; Knight, Richard R.

1995-01-01

Relocating grizzly bears (Ursus arctos) from human/bear conflict situations has been a standard management procedure. Using data from Yellowstone National Park, we present components of situations that may affect the outcome of a relocation. Survival rates of transported bears were lower (lx = 0.83) (P = 0.001) than those not transported (lx = 0.89). Survival was largely affected by whether the bear returned to the capture site (P = 0.029). Return rate was most affected by distance transported (P = 0.012) and age-sex group (P = 0.014). Return rates decreased at distances -75 km, and subadult females returned least (P = 0.050) often. Because of low survival and high return rates, transporting grizzly bears should be considered a final action to eliminate a conflict situation. However, transporting females must be considered a viable management technique because transports of some individuals have resulted in contributions to the population through successful reproduction.

Analysis of charge transport in gels containing polyoxometallates using methods of different sensitivity to migration.

PubMed

Caban, Karolina; Lewera, Adam; Zukowska, Grazyna Z; Kulesza, Pawel J; Stojek, Zbigniew; Jeffrey, Kenneth R

2006-08-04

Two methods have been used for examination of transport of charge in gels soaked with DMF and containing dissolved polyoxometallates. The first method is based on the analysis of both Cottrellian and steady-state currents and therefore is capable of giving the concentration of the electroactive redox centres and their transport (diffusion-type) coefficient. The second method provides the real diffusion coefficients, i.e. transport coefficients free of migrational influence, for both the substrate and the product of the electrode reaction. Several gels based on poly(methyl methacrylate), with charged (addition of 1-acrylamido-2-methyl-2-propanesulphonic acid to the polymerization mixture) and uncharged chains, have been used in the investigation. The ratio obtained for the diffusion coefficient (second method) and transport coefficient (first method) was smaller for the gels containing charged polymer chains than for the gels with uncharged chains. In part these changes could be explained by the contribution of migration to the transport of polyoxomatallates in the gels. However, the impact of the changes in the polymer-channel capacity at the electrode surface while the electrode process proceeds was also considered. These structural changes should affect differently the methods based on different time domains.

Global gene response in Saccharomyces cerevisiae exposed to silver nanoparticles.

PubMed

Niazi, Javed H; Sang, Byoung-In; Kim, Yeon Seok; Gu, Man Bock

2011-08-01

Silver nanoparticles (AgNPs), exhibiting a broad size range and morphologies with highly reactive facets, which are widely applicable in real-life but not fully verified for biosafety and ecotoxicity, were subjected to report transcriptome profile in yeast Saccharomyces cerevisiae. A large number of genes accounted for ∼3% and ∼5% of the genome affected by AgNPs and Ag-ions, respectively. Principal component and cluster analysis suggest that the different physical forms of Ag were the major cause in differential expression profile. Among 90 genes affected by both AgNPs and Ag-ions, metalloprotein mediating high resistance to copper (CUP1-1 and CUP1-2) were strongly induced by AgNPs (∼45-folds) and Ag-ions (∼22-folds), respectively. A total of 17 genes, responsive to chemical stimuli, stress, and transport processes, were differentially induced by AgNPs. The differential expression was also seen with Ag-ions that affected 73 up- and 161 down-regulating genes, and most of these were involved in ion transport and homeostasis. This study provides new information on the knowledge for impact of nanoparticles on living microorganisms that can be extended to other nanoparticles.

North Atlantic Deep Water formation inhibits high Arctic contamination by continental perfluorooctane sulfonate discharges

NASA Astrophysics Data System (ADS)

Zhang, Xianming; Zhang, Yanxu; Dassuncao, Clifton; Lohmann, Rainer; Sunderland, Elsie M.

2017-08-01

Perfluorooctane sulfonate (PFOS) is an aliphatic fluorinated compound with eight carbon atoms that is extremely persistent in the environment and can adversely affect human and ecological health. The stability, low reactivity, and high water solubility of PFOS combined with the North American phaseout in production around the year 2000 make it a potentially useful new tracer for ocean circulation. Here we characterize processes affecting the lifetime and accumulation of PFOS in the North Atlantic Ocean and transport to sensitive Arctic regions by developing a 3-D simulation within the MITgcm. The model captures variability in measurements across biogeographical provinces (R2 = 0.90, p = 0.01). In 2015, the North Atlantic PFOS reservoir was equivalent to 60% of cumulative inputs from the North American and European continents (1400 Mg). Cumulative inputs to the Arctic accounted for 30% of continental discharges, while the remaining 10% was transported to the tropical Atlantic and other regions. PFOS concentrations declined rapidly after 2002 in the surface mixed layer (half-life: 1-2 years) but are still increasing below 1000 m depth. During peak production years (1980-2000), plumes of PFOS-enriched seawater were transported to the sub-Arctic in energetic surface ocean currents. However, Atlantic Meridional Overturning Circulation (AMOC) and deep ocean transport returned a substantial fraction of this northward transport (20%, 530 Mg) to southern latitudes and reduced cumulative inputs to the Arctic (730 Mg) by 70%. Weakened AMOC due to climate change is thus likely to increase the magnitude of persistent bioaccumulative pollutants entering the Arctic Ocean.

Spatial and temporal variability of water salinity in an ephemeral, arid-zone river, central Australia

NASA Astrophysics Data System (ADS)

Costelloe, Justin F.; Grayson, Rodger B.; McMahon, Thomas A.; Argent, Robert M.

2005-10-01

This study describes the spatial and temporal variability of water salinity of the Neales-Peake, an ephemeral river system in the arid Lake Eyre basin of central Australia. Saline to hypersaline waterholes occur in the lower reaches of the Neales-Peake catchment and lie downstream of subcatchments containing artesian mound springs. Flood pulses are fresh in the upper reaches of the rivers (<200 mg l-1). In the salt-affected reaches, flood pulses become increasingly saline during their recession. It is hypothesized that leakage from the Great Artesian Basin deposits salt at the surface. This salt is then transported by infrequent runoff events into the main river system over long periods of time. The bank/floodplain store downstream of salt-affected catchments contains high salt concentrations, and this salt is mobilized during the flow recession when bank/floodplain storage discharges into the channel. The salinity of the recession increases as the percentage of flow derived from this storage increases. A simple conceptual model was developed for investigating the salt movement processes during flow events. The model structure for transport of water and salt in the Neales-Peake catchment generated similar spatial and temporal patterns of salt distribution in the floodplain/bank storage and water flow as observed during flow events in 2000-02. However, more field-data collection and modelling are required for improved calibration and description of salt transport and storage processes, particularly with regard to the number of stores required to represent the salt distribution in the upper zone of the soil profile.

Underground Coalfires as an Incentive and Challenge to THMC Modeling

NASA Astrophysics Data System (ADS)

Wuttke, Manfred W.; Fischer, Christian; Gusat, Dorel; Meyer, Uwe; Schmidt, Martin

2010-05-01

Spontaneous combustion of coal has become a world wide problem often caused by technical operations in coal mining areas. It affects human activities locally but even more important globally through the contribution to global warming by emitting substantial amounts of greenhouse gases like carbondioxid. Investigations of underground coalfires so far mainly with the aim of their mitigation have revealed a network of complex interactions between thermal, hydraulic, mechanical and chemical processes in this unique systems. Numerical modeling at the moment is only at the brink of being helpful to support the fire fighting in the field, but has already served as a tool to test the overall understanding of coal fire processes and to estimate their environmental impacts. This work aims at summarizing the status of THMC modeling of underground coalfires, mainly from the perspective of the Sino-German Coalfire Project, and gives an overview of the open questions and challenges to rise to if one is up to comprehensive and meaningful modeling work. The main topics are: The fluid transport through fractured porous media is driven by chemical processes at high temperatures causing high pressure gradients. Transport processes occur on different timescales. Thermal and mechanical stresses cause fracturing in the porous media on a huge range of scales, thus constantly changing the pathways for oxygen supply and exhaust gas removal. To investigate any extinction process one has to consider multi phase transport with phase changes (evaporation and condensation of water, transport of mud and cementation, etc.). To interpret surface signatures like temperature anomalies one has to link the underground processes to atmospheric heat transport including radiation. Coal fires are highly individual, threedimensional systems in general without any symmetry. Other problems in geoscience and geoengineering (like nuclear waste deposition, geothermal energy utilization, carbon dioxide sequestration) require a comparably complex approach to modeling. Although the details make it impossible to apply a single code implementation to all systems, their investigations go in similar ways. There is a need for modular code systems with open access for the various communities to maximize the shared synergistic effects.

An agent-based modelling framework to explore the role of social media and stubborn people on evacuation rates during flooding events

NASA Astrophysics Data System (ADS)

Du, E.; Cai, X.; Minsker, B. S.; Sun, Z.

2017-12-01

Flood warnings from various information sources are important for individuals to make evacuation decisions during a flood event. In this study, we develop a general opinion dynamics model to simulate how individuals update their flood hazard awareness when exposed to multiple information sources, including global broadcast, social media, and observations of neighbors' actions. The opinion dynamics model is coupled with a traffic model to simulate the evacuation processes of a residential community with a given transportation network. Through various scenarios, we investigate how social media affect the opinion dynamics and evacuation processes. We find that stronger social media can make evacuation processes more sensitive to the change of global broadcast and neighbor observations, and thus, impose larger uncertainty on evacuation rates (i.e., a large range of evacuation rates corresponding to sources of information). For instance, evacuation rates are lower when social media become more influential and individuals have less trust in global broadcast. Stubborn individuals can significantly affect the opinion dynamics and reduce evacuation rates. In addition, evacuation rates respond to the percentage of stubborn agents in a non-linear manner, i.e., above a threshold, the impact of stubborn agents will be intensified by stronger social media. These results highlight the role of social media in flood evacuation processes and the need to monitor social media so that misinformation can be corrected in a timely manner. The joint impacts of social media, quality of flood warnings and transportation capacity on evacuation rates are also discussed.

A Benchmarking Initiative for Reactive Transport Modeling Applied to Subsurface Environmental Applications

NASA Astrophysics Data System (ADS)

Steefel, C. I.

2015-12-01

Over the last 20 years, we have seen the evolution of multicomponent reactive transport modeling and the expanding range and increasing complexity of subsurface environmental applications it is being used to address. Reactive transport modeling is being asked to provide accurate assessments of engineering performance and risk for important issues with far-reaching consequences. As a result, the complexity and detail of subsurface processes, properties, and conditions that can be simulated have significantly expanded. Closed form solutions are necessary and useful, but limited to situations that are far simpler than typical applications that combine many physical and chemical processes, in many cases in coupled form. In the absence of closed form and yet realistic solutions for complex applications, numerical benchmark problems with an accepted set of results will be indispensable to qualifying codes for various environmental applications. The intent of this benchmarking exercise, now underway for more than five years, is to develop and publish a set of well-described benchmark problems that can be used to demonstrate simulator conformance with norms established by the subsurface science and engineering community. The objective is not to verify this or that specific code--the reactive transport codes play a supporting role in this regard—but rather to use the codes to verify that a common solution of the problem can be achieved. Thus, the objective of each of the manuscripts is to present an environmentally-relevant benchmark problem that tests the conceptual model capabilities, numerical implementation, process coupling, and accuracy. The benchmark problems developed to date include 1) microbially-mediated reactions, 2) isotopes, 3) multi-component diffusion, 4) uranium fate and transport, 5) metal mobility in mining affected systems, and 6) waste repositories and related aspects.

Importance of 3D Processes Near the Ocean's Surface for Material Transport

NASA Astrophysics Data System (ADS)

Ozgokmen, T. M.

2014-12-01

There are a number of practical problems that demand an accurate knowledge of ocean currents near the surface of the ocean. It is known that oceanic coherent features transport heat and carry out vertical exchange of biogeochemical tracers. Ocean currents can affect biological primary production, air-sea gas exchanges and global tracer budgets. Ocean currents are also important for the dispersion of substances that pose a danger to society, economy and human health. Examples of such events include algal blooms, the Fukushima nuclear plant incident in the Pacific Ocean in 2011, and repeated large oil spills in the Gulf of Mexico, namely the IXTOC in 1978 and the Deepwater Horizon event in 2010. Such incidents demand accurate answers to questions such as ``where will the pollutant go?", ``how fast will it get there?" and ``how much pollutant will arrive there?", and in some instances ``where did the pollutant come from?". The answers to these questions are critical to the allocation of limited response resources, and in determining the overall impact of the events. We will summarize the efforts by the Consortium for Advanced Research on Transport of Hydrocarbon in the Environment (CARTHE). One of the primary objectives of CARTHE is to improve predictive modeling capability for flows near the air-sea interface. In particular, two large experiments, Grand Lagrangian Deployment (GLAD) and Surf-zone and Coastal Oil Pathways Experiment (SCOPE), coordinated with real-time modeling were instructive on processes influencing near-surface material transport. Findings on submesoscale flows as well as model deficiencies to capture processes relevant to transport will be discussed. Insight into future modeling and observational plans will be provided.

An overview of natural hazard impacts to railways and urban transportation systems

NASA Astrophysics Data System (ADS)

Bíl, Michal; Nezval, Vojtěch; Bílová, Martina; Andrášik, Richard; Kubeček, Jan

2017-04-01

We present an overview and two case studies of natural hazard impacts on rail transportation systems in the Czech Republic. Flooding, landsliding, heavy snowfall, windstorms and glaze (black ice) are the most common natural processes which occur in this region. Whereas flooding and landsliding usually cause direct damage to the transportation infrastructure, other hazards predominantly cause indirect losses. Railway and urban tramline networks are almost fully dependent on electricity which is provided by a system of overhead lines (electric lines above the tracks). These lines are extremely susceptible to formation of glaze which blocks conduction of electric current. A December 2014 glaze event caused significant indirect losses in the largest Czech cities and railways due to the above-mentioned process. Details of this event will be provided during the presentation. Windstorms usually cause tree falls which can affect overhead lines and physically block railway tracks. Approximately 30 % of the Czech railway network is closer than 50 m from the nearest forest. This presents significant potential for transport interruption due to falling trees. Complicated legal relations among the owners of the plots of land along railways, the environment (full-grown trees and related habitat), and the railway administrator are behind many traffic interruptions due to falling trees. We have registered 2040 tree falls between 2012 and 2015 on the railway network. A model of the fallen tree hazard was created for the entire Czech railway network. Both above-mentioned case studies provide illustrative examples of the increased fragility of the modern transportation systems which fully rely on electricity. Natural processes with a low destructive power are thereby able to cause network wide service cut-offs.

Simulation of pipeline in the area of the underwater crossing

NASA Astrophysics Data System (ADS)

Burkov, P.; Chernyavskiy, D.; Burkova, S.; Konan, E. C.

2014-08-01

The article studies stress-strain behavior of the main oil-pipeline section Alexandrovskoye-Anzhero-Sudzhensk using software system Ansys. This method of examination and assessment of technical conditions of objects of pipeline transport studies the objects and the processes that affect the technical condition of these facilities, including the research on the basis of computer simulation. Such approach allows to develop the theory, methods of calculations and designing of objects of pipeline transport, units and parts of machines, regardless of their industry and destination with a view to improve the existing constructions and create new structures, machines of high performance, durability and reliability, maintainability, low material capacity and cost, which have competitiveness on the world market.

GOES-S Atlas V Centaur Stage Transport from ASOC to DOC

NASA Image and Video Library

2018-01-24

The Centaur upper stage that will help launch NOAA's Geostationary Operational Environmental Satellite-S, or GOES-S, has been lifted from its transporter inside the Delta Operations Center at Cape Canaveral Air Force Station for further processing. GOES-S is the second in a series of four advanced geostationary weather satellites. The GOES-R series - consisting of the GOES-R, GOES-S, GOES-T and GOES-U spacecraft - will significantly improve the detection and observation of environmental phenomena that directly affect public safety, protection of property and the nation's economic health and prosperity. GOES-S is slated to launch March 1, 2018 aboard a United Launch Alliance Atlas V rocket.

GOES-S Atlas V Centaur Stage Transport from ASOC to DOC

NASA Image and Video Library

2018-01-24

The Centaur upper stage that will help launch NOAA's Geostationary Operational Environmental Satellite-S, or GOES-S, is being transported from the Atlas Spaceflight Operations Center at Cape Canaveral Air Force Station to the Delta Operations Center for further processing. GOES-S is the second in a series of four advanced geostationary weather satellites. The GOES-R series - consisting of the GOES-R, GOES-S, GOES-T and GOES-U spacecraft - will significantly improve the detection and observation of environmental phenomena that directly affect public safety, protection of property and the nation's economic health and prosperity. GOES-S is slated to launch March 1, 2018 aboard a United Launch Alliance Atlas V rocket.

Mathematical model of design loading vessel

NASA Astrophysics Data System (ADS)

Budnik, V. Yu

2017-10-01

Transport by ferry is very important in our time. The paper shows the factors that affect the operation of the ferry. The constraints of the designed system were identified. The indicators of quality were articulated. It can be done by means of improving the decision-making process and the choice of the optimum loading options to ensure efficient functioning of Kerch strait ferry line. The algorithm and a mathematical model were developed.

Experimental Program to Stimulate Competitive Research (EPSCoR)

NASA Technical Reports Server (NTRS)

Dingerson, Michael R.

1997-01-01

Report includes: (1) CLUSTER: "Studies in Macromolecular Behavior in Microgravity Environment": The Role of Protein Oligomers in Protein Crystallization; Phase Separation Phenomena in Microgravity; Traveling Front Polymerizations; Investigating Mechanisms Affecting Phase Transition Response and Changes in Thermal Transport Properties in ER-Fluids under Normal and Microgravity Conditions. (2) CLUSTER: "Computational/Parallel Processing Studies": Flows in Local Chemical Equilibrium; A Computational Method for Solving Very Large Problems; Modeling of Cavitating Flows.

Characterizing the impact of diffusive and advective soil gas transport on the measurement and interpretation of the isotopic signal of soil respiration

Treesearch

Zachary E. Kayler; Elizabeth W. Sulzman; William D. Rugh; Alan C. Mix; Barbara J. Bond

2010-01-01

By measuring the isotopic signature of soil respiration, we seek to learn the isotopic composition of the carbon respired in the soil (δ13CR-S) so that we may draw inferences about ecosystem processes. Requisite to this goal is the need to understand how (δ13CR-S) is affected by...

Digital hydrologic networks supporting applications related to spatially referenced regression modeling

USGS Publications Warehouse

Brakebill, John W.; Wolock, David M.; Terziotti, Silvia

2011-01-01

Digital hydrologic networks depicting surface-water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the movement of water and associated constituents throughout the landscape. Digital hydrologic networks have evolved from derivatives of mapping products to detailed, interconnected, spatially referenced networks of water pathways, drainage areas, and stream and watershed characteristics. These properties are important because they enhance the ability to spatially evaluate factors that affect the sources and transport of water-quality constituents at various scales. SPAtially Referenced Regressions On Watershed attributes (SPARROW), a process-based ⁄ statistical model, relies on a digital hydrologic network in order to establish relations between quantities of monitored contaminant flux, contaminant sources, and the associated physical characteristics affecting contaminant transport. Digital hydrologic networks modified from the River Reach File (RF1) and National Hydrography Dataset (NHD) geospatial datasets provided frameworks for SPARROW in six regions of the conterminous United States. In addition, characteristics of the modified RF1 were used to update estimates of mean-annual streamflow. This produced more current flow estimates for use in SPARROW modeling.

Transport via SLC5A8 with Subsequent Inhibition of Histone Deacetylases HDAC1 and HDAC3 Underlies the Antitumor Activity of 3-Bromopyruvate

PubMed Central

Thangaraju, Muthusamy; Karunakaran, Senthil K.; Itagaki, Shiro; Gopal, Elangovan; Elangovan, Selvakumar; Prasad, Puttur D.; Ganapathy, Vadivel

2009-01-01

Background 3-Bromopyruvate is an alkylating agent with antitumor activity. It is currently believed that blockade of ATP production from glycolysis and mitochondria is the primary mechanism responsible for this antitumor effect. The present studies have uncovered a new and novel mechanism for the antitumor activity of 3-bromopyruvate. Methods Transport of 3-bromopyruvate via SLC5A8, a tumor suppressor and a Na+-coupled electrogenic transporter for short-chain monocarboxylates, was studied using a mammalian cell expression and the Xenopus laevis oocyte expression systems. The effect of 3-bromopyruvate on histone deacetylases (HDACs) was monitored using the lysate of the human breast cancer cell line MCF7 and human recombinant HDAC isoforms as the enzyme sources. Cell viability was monitored by FACS analysis and colony formation assay. Acetylation status of histone H4 was evaluated by Western blot. Results 3-Bromopyruvate is a transportable substrate for SLC5A8, with the transport process being Na+-coupled and electrogenic. MCF7 cells do not express SLC5A8 and are not affected by 3-bromopyruvate. However, when transfected with SLC5A8 or treated with inhibitors of DNA methylation, these cells undergo apoptosis in the presence of 3-bromopyruvate. This cell death is associated with inhibition of HDAC1/HDAC3. Studies with different isoforms of human recombinant HDACs identify HDAC1 and HDAC3 as the targets for 3-bromopyruvate. Conclusions 3-Bromopyruvate is transported into cells actively via the tumor suppressor SLC5A8 and the process is energized by an electrochemical Na+ gradient. Ectopic expression of the transporter in MCF7 cells leads to apoptosis, and the mechanism involves inhibition of HDAC1/HDAC3. PMID:19637353

Correcting for diffusion in carbon-14 dating of ground water

USGS Publications Warehouse

Sanford, W.E.

1997-01-01

It has generally been recognized that molecular diffusion can be a significant process affecting the transport of carbon-14 in the subsurface when occurring either from a permeable aquifer into a confining layer or from a fracture into a rock matrix. An analytical solution that is valid for steady-state radionuclide transport through fractured rock is shown to be applicable to many multilayered aquifer systems. By plotting the ratio of the rate of diffusion to the rate of decay of carbon-14 over the length scales representative of several common hydrogeologic settings, it is demonstrated that diffusion of carbon-14 should often be not only a significant process, but a dominant one relative to decay. An age-correction formula is developed and applied to the Bangkok Basin of Thailand, where a mean carbon-14-based age of 21,000 years was adjusted to 11,000 years to account for diffusion. This formula and its graphical representation should prove useful for many studies, for they can be used first to estimate the potential role of diffusion and then to make a simple first-order age correction if necessary.It has generally been recognized that molecular diffusion can be a significant process affecting the transport of carbon-14 in the subsurface when occurring either from a permeable aquifer into a confining layer or from a fracture into a rock matrix. An analytical solution that is valid for steady-state radionuclide transport through fractured rock is shown to be applicable to many multilayered aquifer systems. By plotting the ratio of the rate of diffusion to the rate of decay of carbon-14 over the length scales representative of several common hydrogeologic settings, it is demonstrated that diffusion of carbon-14 should often be not only a significant process, but a dominant one relative to decay. An age-correction formula is developed and applied to the Bangkok Basin of Thailand, where a mean carbon-14-based age of 21,000 years was adjusted to 11,000 years to account for diffusion. This formula and its graphical representation should prove useful for many studies, for they can be used first to estimate the potential role of diffusion and then to make a simple first-order age correction if necessary.

Emerging Climate-data Needs in the Air Transport Sector

NASA Astrophysics Data System (ADS)

Thompson, T. R.

2014-12-01

This paper addresses the nature of climate information needed within the air-transport sector. Air transport is not a single economic sector with uniform needs for climate data: airport, airline, and air-navigation services are the principal sub-sectors, each with their own particular climate-related decision contexts. For example, airports function as fixed infrastructure that is primarily affected by probabilities of extreme events that could hamper runway/taxiway operations, interfere with worker availability, or impede travel to and from the airport by passengers. Airlines, in contrast, are more concerned with changes in atmospheric conditions (upper-air turbulence, convective weather events, etc.) that might require consideration in long-term decisions related to flight-planning processes and aircraft equipage. Air-navigation service providers have needs that are primarily concerned with assurance of safe spatial separation of aircraft via sensor data and communications links. In addition to present-day commercial air transport, we discuss what climate data may be needed for new types of air transport that may emerge in the next couple of decades. These include, for example, small aircraft provided on-demand to non-pilot travelers, high-altitude supersonic business and commercial jets, and very large numbers of un-manned aircraft. Finally, we give examples relating to key technical challenges in providing decision-relevant climate data to the air-transport sector. These include: (1) identifying what types of climate data are most relevant the different decisions facing the several segments of this industry; (2) determining decision-appropriate time horizons for forecasts of this data; and (3) coupling the uncertainties inherent in these forecasts to the decision process.

Roles of ion transport in control of cell motility.

PubMed

Stock, Christian; Ludwig, Florian T; Hanley, Peter J; Schwab, Albrecht

2013-01-01

Cell motility is an essential feature of life. It is essential for reproduction, propagation, embryonic development, and healing processes such as wound closure and a successful immune defense. If out of control, cell motility can become life-threatening as, for example, in metastasis or autoimmune diseases. Regardless of whether ciliary/flagellar or amoeboid movement, controlled motility always requires a concerted action of ion channels and transporters, cytoskeletal elements, and signaling cascades. Ion transport across the plasma membrane contributes to cell motility by affecting the membrane potential and voltage-sensitive ion channels, by inducing local volume changes with the help of aquaporins and by modulating cytosolic Ca(2+) and H(+) concentrations. Voltage-sensitive ion channels serve as voltage detectors in electric fields thus enabling galvanotaxis; local swelling facilitates the outgrowth of protrusions at the leading edge while local shrinkage accompanies the retraction of the cell rear; the cytosolic Ca(2+) concentration exerts its main effect on cytoskeletal dynamics via motor proteins such as myosin or dynein; and both, the intracellular and the extracellular H(+) concentration modulate cell migration and adhesion by tuning the activity of enzymes and signaling molecules in the cytosol as well as the activation state of adhesion molecules at the cell surface. In addition to the actual process of ion transport, both, channels and transporters contribute to cell migration by being part of focal adhesion complexes and/or physically interacting with components of the cytoskeleton. The present article provides an overview of how the numerous ion-transport mechanisms contribute to the various modes of cell motility.

Surface Transportation Weather Decision Support Requirements - Executive Summary, Version 1.0

DOT National Transportation Integrated Search

1999-12-16

WEATHER: IT AFFECTS THE VISIBILITY, TRACTABILITY, MANEUVERABILITY, VEHICLE STABILITY, EXHAUST EMISSIONS AND STRUCTURAL INTEGRITY OF THE SURFACE TRANSPORTATION SYSTEM. THEREBY WEATHER AFFECTS THE SAFETY, MOBILITY, PRODUCTIVITY AND ENVIRONMENTAL IMPACT...

Sustainability assessment for the transportation environment of Darjeeling, India.

PubMed

Nag, Dipanjan; Paul, Subrata Kr; Saha, Swati; Goswami, Arkopal K

2018-05-01

Darjeeling is an important tourist hill town of West Bengal, India. It suffers from an acute problem of transportation, particularly during its peak tourist seasons due to limited road space, inadequate public transport facilities and indiscriminate use of automobiles. This hill town was originally designed for a population of 10,000, but over the years, it has come face-to-face with rapid urbanization, a rising population of both tourists and residents and intensifying motor vehicle usage. These factors together are posing a threat to its transport environment. This study identifies the Sustainable Transport Indicators (STIs) available in the existing literature to identify the critical stretches using Analytical Hierarchy Process (AHP) based on experts' consensus. It was found that the experts placed emphasis on the mobility of the town, talking about vehicular impact on air pollution and encroachment of roads as the main issues affecting the sustainability of the transport environment. Thereafter, policy-level interventions have been suggested in accordance with the identified sustainability issues. We trust that other tourist hill towns with issues similar to Darjeeling could easily emulate the study methodology to assess their transport environment sustainability, or replicate on the lines of the recommended policy interventions. Copyright © 2018 Elsevier Ltd. All rights reserved.

PROMAB-GIS: A GIS based Tool for Estimating Runoff and Sediment Yield in running Waters

NASA Astrophysics Data System (ADS)

Jenewein, S.; Rinderer, M.; Ploner, A.; Sönser, T.

2003-04-01

In recent times settlements have expanded, traffic and tourist activities have increased in most alpine regions. As a consequence, on the one hand humans and goods are affected by natural hazard processes more often, while on the other hand the demand for protection by both technical constructions and planning measures carried out by public authorities is growing. This situation results in an ever stronger need of reproducibility, comparability, transparency of all methods applied in modern natural hazard management. As a contribution to a new way of coping this situation Promab-GIS Version 1.0 has been developed. Promab-Gis has been designed as a model for time- and space-dependent determination of both runoff and bedload transport in rivers of small alpine catchment areas. The estimation of the unit hydrograph relies upon the "rational formula" and the time-area curves of the watershed. The time area diagram is a graph of cumulative drainage area contributing to discharge at the watershed outlet within a specified time of travel. The sediment yield is estimated for each cell of the channel network by determining the actual process type (erosion, transport or accumulation). Two types of transport processes are considered, sediment transport and debris flows. All functions of Promab-GIS are integrated in the graphical user interface of ArcView as pull-up menus and tool buttons. Hence the application of Promab-GIS does not rely on a sophisticated knowledge of GIS in general, respectively the ArcView software. However, despite the use of computer assistance, Promab-GIS still is an expert support system. In order to obtain plausible results, the users must be familiar with all the relevant processes controlling runoff and sediment yield in torrent catchments.

Life-cycle assessment of corn-based butanol as a potential transportation fuel.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, M.; Wang, M.; Liu, J.

2007-12-31

Butanol produced from bio-sources (such as corn) could have attractive properties as a transportation fuel. Production of butanol through a fermentation process called acetone-butanol-ethanol (ABE) has been the focus of increasing research and development efforts. Advances in ABE process development in recent years have led to drastic increases in ABE productivity and yields, making butanol production worthy of evaluation for use in motor vehicles. Consequently, chemical/fuel industries have announced their intention to produce butanol from bio-based materials. The purpose of this study is to estimate the potential life-cycle energy and emission effects associated with using bio-butanol as a transportation fuel.more » The study employs a well-to-wheels analysis tool--the Greenhouse Gases, Regulated Emissions and Energy Use in Transportation (GREET) model developed at Argonne National Laboratory--and the Aspen Plus{reg_sign} model developed by AspenTech. The study describes the butanol production from corn, including grain processing, fermentation, gas stripping, distillation, and adsorption for products separation. The Aspen{reg_sign} results that we obtained for the corn-to-butanol production process provide the basis for GREET modeling to estimate life-cycle energy use and greenhouse gas emissions. The GREET model was expanded to simulate the bio-butanol life cycle, from agricultural chemical production to butanol use in motor vehicles. We then compared the results for bio-butanol with those of conventional gasoline. We also analyzed the bio-acetone that is coproduced with bio-butanol as an alternative to petroleum-based acetone. Our study shows that, while the use of corn-based butanol achieves energy benefits and reduces greenhouse gas emissions, the results are affected by the methods used to treat the acetone that is co-produced in butanol plants.« less

Phosphorus runoff from waste water treatment biosolids and poultry litter applied to agricultural soils.

PubMed

White, John W; Coale, Frank J; Sims, J Thomas; Shober, Amy L

2010-01-01

Differences in the properties of organic phosphorus (P) sources, particularly those that undergo treatment to reduce soluble P, can affect soil P solubility and P transport in surface runoff. This 2-yr field study investigated soil P solubility and runoff P losses from two agricultural soils in the Mid-Atlantic region after land application of biosolids derived from different waste water treatment processes and poultry litter. Phosphorus speciation in the biosolids and poultry litter differed due to treatment processes and significantly altered soil P solubility and dissolved reactive P (DRP) and bioavailable P (FeO-P) concentrations in surface runoff. Runoff total P (TP) concentrations were closely related to sediment transport. Initial runoff DRP and FeO-P concentrations varied among the different biosolids and poultry litter applied. Over time, as sediment transport declined and DRP concentrations became an increasingly important component of runoff FeO-P and TP, total runoff P was more strongly influenced by the type of biosolids applied. Throughout the study, application of lime-stabilized biosolids and poultry litter increased concentrations of soil-soluble P, readily desorbable P, and soil P saturation, resulting in increased DRP and FeO-P concentrations in runoff. Land application of biosolids generated from waste water treatment processes that used amendments to reduce P solubility (e.g., FeCl(3)) did not increase soil P saturation and reduced the potential for DRP and FeO-P transport in surface runoff. These results illustrate the importance of waste water treatment plant process and determination of specific P source coefficients to account for differential P availability among organic P sources.

Three-Dimensional Mathematical Model of Oxygen Transport Behavior in Electroslag Remelting Process

NASA Astrophysics Data System (ADS)

Huang, Xuechi; Li, Baokuan; Liu, Zhongqiu

2018-04-01

A transient three-dimensional model has been proposed to investigate the oxygen transport behavior in electroslag remelting process. The electromagnetism, heat transfer, multiphase flow, and species transport were calculated simultaneously by finite volume method. The volume of fluid approach was adopted to trace the metal-slag-air three-phase flow. Based on the necessary thermodynamics of oxygen transport behavior, a kinetic model was established to predict the mass source terms in species transport equation. The kinetic correction factor was proposed to account for the effect of the oxide scale formed on the electrode on the FeO content in slag. Finally, the effect of applied current on the oxygen transfer was studied. The predicted result agrees well with the measured data when the kinetic correction factor is set to be 0.5. The temperature distribution that affects the thermodynamics differs at the interfaces. The oxygen in air is absorbed into slag due to the oxidation at the slag/air interface. The Fe2O3 in slag and the oxide scale contribute to the increase of FeO content in slag, and the latter one plays the leading role. The oxygen transfer from slag to metal mainly occurs during the formation of the droplet at the slag/metal droplet interface. With the current increasing from 1200 to 1800 A, the oxygen content increases from 76.4 to 89.8 ppm, and then slightly declines to 89.2 ppm when the current increases to 2100 A.

Insights from the Fungus Fusarium oxysporum Point to High Affinity Glucose Transporters as Targets for Enhancing Ethanol Production from Lignocellulose

PubMed Central

Ali, Shahin S.; Nugent, Brian; Mullins, Ewen; Doohan, Fiona M.

2013-01-01

Ethanol is the most-widely used biofuel in the world today. Lignocellulosic plant biomass derived from agricultural residue can be converted to ethanol via microbial bioprocessing. Fungi such as Fusarium oxysporum can simultaneously saccharify straw to sugars and ferment sugars to ethanol. But there are many bottlenecks that need to be overcome to increase the efficacy of microbial production of ethanol from straw, not least enhancement of the rate of fermentation of both hexose and pentose sugars. This research tested the hypothesis that the rate of sugar uptake by F. oxysporum would enhance the ethanol yields from lignocellulosic straw and that high affinity glucose transporters can enhance ethanol yields from this substrate. We characterized a novel hexose transporter (Hxt) from this fungus. The F. oxysporum Hxt represents a novel transporter with homology to yeast glucose signaling/transporter proteins Rgt2 and Snf3, but it lacks their C-terminal domain which is necessary for glucose signalling. Its expression level decreased with increasing glucose concentration in the medium and in a glucose uptake study the Km(glucose) was 0.9 mM, which indicated that the protein is a high affinity glucose transporter. Post-translational gene silencing or over expression of the Hxt in F. oxysporum directly affected the glucose and xylose transport capacity and ethanol yielded by F. oxysporum from straw, glucose and xylose. Thus we conclude that this Hxt has the capacity to transport both C5 and C6 sugars and to enhance ethanol yields from lignocellulosic material. This study has confirmed that high affinity glucose transporters are ideal candidates for improving ethanol yields from lignocellulose because their activity and level of expression is high in low glucose concentrations, which is very common during the process of consolidated processing. PMID:23382943

Analysis of Transition-Sensitized Turbulent Transport Equations

NASA Technical Reports Server (NTRS)

Rumsey, Christopher L.; Thacker, William D.; Gatski, Thomas B.; Grosch, Chester E,

2005-01-01

The dynamics of an ensemble of linear disturbances in boundary-layer flows at various Reynolds numbers is studied through an analysis of the transport equations for the mean disturbance kinetic energy and energy dissipation rate. Effects of adverse and favorable pressure-gradients on the disturbance dynamics are also included in the analysis Unlike the fully turbulent regime where nonlinear phase scrambling of the fluctuations affects the flow field even in proximity to the wall, the early stage transition regime fluctuations studied here are influenced cross the boundary layer by the solid boundary. The dominating dynamics in the disturbance kinetic energy and dissipation rate equations are described. These results are then used to formulate transition-sensitized turbulent transport equations, which are solved in a two-step process and applied to zero-pressure-gradient flow over a flat plate. Computed results are in good agreement with experimental data.

Allocation, stress tolerance and carbon transport in plants: how does phloem physiology affect plant ecology?

PubMed

Savage, Jessica A; Clearwater, Michael J; Haines, Dustin F; Klein, Tamir; Mencuccini, Maurizio; Sevanto, Sanna; Turgeon, Robert; Zhang, Cankui

2016-04-01

Despite the crucial role of carbon transport in whole plant physiology and its impact on plant-environment interactions and ecosystem function, relatively little research has tried to examine how phloem physiology impacts plant ecology. In this review, we highlight several areas of active research where inquiry into phloem physiology has increased our understanding of whole plant function and ecological processes. We consider how xylem-phloem interactions impact plant drought tolerance and reproduction, how phloem transport influences carbon allocation in trees and carbon cycling in ecosystems and how phloem function mediates plant relations with insects, pests, microbes and symbiotes. We argue that in spite of challenges that exist in studying phloem physiology, it is critical that we consider the role of this dynamic vascular system when examining the relationship between plants and their biotic and abiotic environment. © 2015 John Wiley & Sons Ltd.

Optoelectrical, structural and morphological characterization of Cu2ZnSnSe4 compound used in photovoltaic applications

NASA Astrophysics Data System (ADS)

Mesa, F.; Leguizamon, A.; Dussan, A.; Gordillo, G.

2016-10-01

In this work, results are reported concerning the effect of the deposition parameters on the structural properties of Cu2ZnSnSe4 (CZTSe) thin films, grown through a chemical reaction of the metallic precursors by co-evaporation in a two-stage process. XRD measurements revealed that the samples deposited by selenization of Cu and Sn grow in the kesterite phase (CZTSe), respectively. Effect of the deposition temperature and mass ratio Cu/ZnSe on the transport properties of CZTSe films were analyzed. It was also found that the electrical conductivity of the thin films is affected by the transport of free carriers in extended states of the conduction band as well as for variable range hopping transport mechanisms, each one predominating in a different temperature range. The molecular and morphological effect on the compound through Raman and AFM measurements was studied.

Reactive solute transport in acidic streams

USGS Publications Warehouse

Broshears, R.E.

1996-01-01

Spatial and temporal profiles of Ph and concentrations of toxic metals in streams affected by acid mine drainage are the result of the interplay of physical and biogeochemical processes. This paper describes a reactive solute transport model that provides a physically and thermodynamically quantitative interpretation of these profiles. The model combines a transport module that includes advection-dispersion and transient storage with a geochemical speciation module based on MINTEQA2. Input to the model includes stream hydrologic properties derived from tracer-dilution experiments, headwater and lateral inflow concentrations analyzed in field samples, and a thermodynamic database. Simulations reproduced the general features of steady-state patterns of observed pH and concentrations of aluminum and sulfate in St. Kevin Gulch, an acid mine drainage stream near Leadville, Colorado. These patterns were altered temporarily by injection of sodium carbonate into the stream. A transient simulation reproduced the observed effects of the base injection.

Out-of-plane electron transport in finite layer MoS2

NASA Astrophysics Data System (ADS)

Holzapfel, R.; Weber, J.; Lukashev, P. V.; Stollenwerk, A. J.

2018-05-01

Ballistic electron emission microscopy (BEEM) has been used to study the processes affecting electron transport along the [0001] direction of finite layer MoS2 flakes deposited onto the surface of Au/Si(001) Schottky diodes. Prominent features present in the differential spectra from the MoS2 flakes are consistent with the density of states of finite layer MoS2 calculated using density functional theory. The ability to observe the electronic structure of the MoS2 appears to be due to the relatively smooth density of states of Si in this energy range and a substantial amount of elastic or quasi-elastic scattering along the MoS2/Au/Si(001) path. Demonstration of these measurements using BEEM suggests that this technique could potentially be used to study electron transport through van der Waals heterostructures, with applications in a number of electronic devices.

Ion sampling and transport in Inductively Coupled Plasma Mass Spectrometry

NASA Astrophysics Data System (ADS)

Farnsworth, Paul B.; Spencer, Ross L.

2017-08-01

Quantitative accuracy and high sensitivity in inductively coupled plasma mass spectrometry (ICP-MS) depend on consistent and efficient extraction and transport of analyte ions from an inductively coupled plasma to a mass analyzer, where they are sorted and detected. In this review we examine the fundamental physical processes that control ion sampling and transport in ICP-MS and compare the results of theory and computerized models with experimental efforts to characterize the flow of ions through plasma mass spectrometers' vacuum interfaces. We trace the flow of ions from their generation in the plasma, into the sampling cone, through the supersonic expansion in the first vacuum stage, through the skimmer, and into the ion optics that deliver the ions to the mass analyzer. At each stage we consider idealized behavior and departures from ideal behavior that affect the performance of ICP-MS as an analytical tool.

Zinc and Zinc Transporters: Novel Regulators of Ventricular Myocardial Development.

PubMed

Lin, Wen; Li, Deqiang

2018-06-01

Ventricular myocardial development is a well-orchestrated process involving different cardiac structures, multiple signal pathways, and myriad proteins. Dysregulation of this important developmental event can result in cardiomyopathies, such as left ventricle non-compaction, which affect the pediatric population and the adults. Human and mouse studies have shed light upon the etiology of some cardiomyopathy cases and highlighted the contribution of both genetic and environmental factors. However, the regulation of ventricular myocardial development remains incompletely understood. Zinc is an essential trace metal with structural, enzymatic, and signaling function. Perturbation of zinc homeostasis has resulted in developmental and physiological defects including cardiomyopathy. In this review, we summarize several mechanisms by which zinc and zinc transporters can impact the regulation of ventricular myocardial development. Based on our review, we propose that zinc deficiency and mutations of zinc transporters may underlie some cardiomyopathy cases especially those involving ventricular myocardial development defects.

Implications for Ecosystem Services of Watershed Processes that affect the Transport and Transformations of Mercury in an Adirondack Stream Basin

NASA Astrophysics Data System (ADS)

Burns, D. A.; Riva-Murray, K.; Bradley, P. M.

2012-12-01

Mercury (Hg) is a potent neurotoxin that can affect the health of humans and wildlife through the ingestion of methyl Hg. Mercury contamination of ecosystems originates from human activities such as mining, coal burning and other industrial emissions, and the use of Hg-containing products. Natural sources such as volcanic and geothermal emissions and the weathering of Hg-bearing minerals also contribute to Hg contamination, but are believed to be minor sources in most ecosystems. Various ecosystem disturbances including fires, forest harvesting, and the submergence of land by impoundment may also contribute to Hg ecosystem contamination by mobilizing stores that have previously originated from the sources described above. Mercury from a mix of regional and global emissions sources is transported in the atmosphere to remote landscapes that are distant from local emissions sources. The Adirondacks of New York State is a forested, mountainous region characterized by abundant lakes and streams, and is distant from local emissions sources. Recreational fishing, wildlife viewing, hiking, and hunting are valued ecosystem services in this region. Here, we report on the relevance to ecosystem services of findings based on five years of Hg data collection of stream water, groundwater, invertebrates, and fish in the upper Hudson River basin in the central part of the Adirondack region. The New York State Dept. of Health has issued fish consumption advisories for the entire Adirondacks based on elevated levels previously measured in lakes and rivers of this region. Our work seeks improved understanding and models of the landscape sources and watershed processes that control the transformation of Hg to its methyl form (MeHg), the transport of MeHg to streams, and bioaccumulation of MeHg in aquatic food webs. Mean annual atmospheric Hg deposition was 6.3 μg/m2/yr during 2007-09, compared to mean annual filtered total Hg stream yields of 1.66 μg/m2/yr and filtered MeHg stream yields of 0.095 μg/m2/yr in a sub-basin of the upper Hudson during this same period. Our work shows that Hg in stream biota, which is largely in the methyl form, is strongly related to MeHg measured in the water column; food web factors that affect Hg bioaccumulation also play a role. In brook trout, the top aquatic predator in the food web of the upper Hudson, Hg concentrations average about 0.1 μg/g, a level believed to affect fish behavior, and a few values were greater than 0.3 μg/g, a level at which human fish consumption advisories are issued. Landscape-based regression models that account for about 80% of the variation in stream MeHg concentrations at 25 sites across the upper Hudson basin include metrics of riparian area and open water indicating the importance of these landscape types in affecting methylation rates, losses of MeHg (through demethylation and other processes), and the transport of MeHg to surface waters. These and other study results indicate that factors such as watershed geomorphology, seasonal variations in discharge and air temperature, and the location and connection of riparian wetlands to streams are the strongest factors that affect stream MeHg concentrations and therefore, the potential ecosystem services provided by fish and other wildlife in the Adirondack region.

Impact of weak water deficit on growth, photosynthetic primary processes and storage processes in pine and spruce seedlings.

PubMed

Zlobin, Ilya E; Ivanov, Yury V; Kartashov, Alexander V; Sarvin, Boris A; Stavrianidi, Andrey N; Kreslavski, Vladimir D; Kuznetsov, Vladimir V

2018-05-19

We investigated the influence of 40 days of drought on growth, storage processes and primary photosynthetic processes in 3-month-old Scots pine and Norway spruce seedlings growing in perlite culture. Water stress significantly affected seedling water status, whereas absolute dry biomass growth was not substantially influenced. Water stress induced an increase in non-structural carbohydrate content (sugars, sugar alcohols, starch) in the aboveground part of pine seedlings in contrast to spruce seedlings. Due to the relatively low content of sugars and sugar alcohols in seedling organs, their expected contribution to osmotic potential changes was quite low. In contrast to biomass accumulation and storage, photosynthetic primary processes were substantially influenced by water shortage. In spruce seedlings, PSII was more sensitive to water stress than PSI. In particular, electron transport in PSI was stable under water stress despite the substantial decrease of electron transport in PSII. The increase in thermal energy dissipation due to enhancement of non-photochemical quenching (NPQ) was evident in both species under water stress. Simultaneously, the yields of non-regulated energy dissipation in PSII were decreased in pine seedlings under drought. A relationship between growth, photosynthetic activities and storage processes is analysed under weak water deficit.

Catchment process affecting drinking water quality, including the significance of rainfall events, using factor analysis and event mean concentrations.

PubMed

Cinque, Kathy; Jayasuriya, Niranjali

2010-12-01

To ensure the protection of drinking water an understanding of the catchment processes which can affect water quality is important as it enables targeted catchment management actions to be implemented. In this study factor analysis (FA) and comparing event mean concentrations (EMCs) with baseline values were techniques used to asses the relationships between water quality parameters and linking those parameters to processes within an agricultural drinking water catchment. FA found that 55% of the variance in the water quality data could be explained by the first factor, which was dominated by parameters usually associated with erosion. Inclusion of pathogenic indicators in an additional FA showed that Enterococcus and Clostridium perfringens (C. perfringens) were also related to the erosion factor. Analysis of the EMCs found that most parameters were significantly higher during periods of rainfall runoff. This study shows that the most dominant processes in an agricultural catchment are surface runoff and erosion. It also shows that it is these processes which mobilise pathogenic indicators and are therefore most likely to influence the transport of pathogens. Catchment management efforts need to focus on reducing the effect of these processes on water quality.

River basin affected by rare perturbation events: the Chaiten volcanic eruption.

NASA Astrophysics Data System (ADS)

Picco, Lorenzo; Iroumé, Andrés; Oss-Cazzador, Daniele; Ulloa, Hector

2017-04-01

Natural disasters can strongly and rapidly affect a wide array of environments. Among these, volcanic eruptions can exert severe impacts on the dynamic equilibrium of riverine environment. The production and subsequent mobilization of large amounts of sediment all over the river basin, can strongly affect both hydrology and sediment and large wood transport dynamics. The aim of this research is to quantify the impact of a volcanic eruption along the Blanco River basin (Southern Chile), considering the geomorphic settings, the sediment dynamics and wood transport. Moreover, an overview on the possible management strategies to reduce the risks will be proposed. The research was carried out mainly along a 2.2 km-long reach of the fourth-order Blanco stream. Almost the entire river basin was affected by the volcanic eruption, several meters of tephra (up to 8 m) were deposited, affecting the evergreen forest and the fluvial corridor. Field surveys and remote sense analysis were carried out to investigate the effect of such extreme event. A Terrestrial Laser Scanner (TLS) was used to detect the morphological changes by computing Difference of Dems (DoDs), while field surveys were carried out to detect the amount of in-channel wood; moreover aerial photos have been analyzed to detect the extension of the impact of volcanic eruption over the river basin. As expected, the DoDs analysis permitted to detect predominant erosional processes along the channel network. In fact, over 190569 m2 there was erosion that produced about 362999 m3 of sediment mobilized, while the deposition happened just over 58715 m2 for a total amount of 23957 m3. Looking then to the LW recruited and transported downstream, was possible to detect as along the active channel corridor a total amount of 113 m3/ha of wood was present. Moreover, analyzing aerial photographs taken before and after the volcanic eruption was possible to define as a total area of about 2.19 km2 was affected by tephra deposition, 0.87 km2 has already been eroded by floods, while 1.32 km2 is still there. Considering an average depth of 5 m, the potential amount of sediment erodible and potentially transported downstream during the next near future is around 6.5 x 106 m3. Finally, from the same area can be recruited other 7.3 x 104 m3 of LW that can be transported towards the mouth. These results may help to better define management strategies to reduce the potential risks to the sensitive structures and cross section downstream. In fact, the management of sediment and LW transport through the lower Chaiten village appear of fundamental importance to guarantee a safer condition. This research is funded by the Chilean research Project FONDECYT 1141064 "Effects of vegetation on channel morphodynamics: a multiscale investigation in Chilean gravel-bed rivers".

Autonomic regulation of mucociliary transport rate in the oesophagus of the frog, Rana temporaria.

PubMed Central

Morley, J; Sanjar, S

1984-01-01

Transport of lead particles along the mucosal surface of the frog oesophagus has been measured by direct observation with the aid of video recording. Electrical stimulation of the vagus nerve increased the rate of particle transport. This acceleration was suppressed by atropine or by hexamethonium. Acetylcholine and other parasympathomimetic agents accelerated particle transport rate. Such acceleration was abolished by atropine. Nicotine increased the rate of particle transport and this effect was suppressed by hexamethonium or by atropine. Atropine did not significantly alter basal particle transport rate. Neither basal particle transport rate nor the response to vagal nerve stimulation were affected by eserine. Adrenaline, noradrenaline or isoprenaline did not affect basal particle transport rate. Adrenaline or noradrenaline were without effect on the increased particle transport rate due to electrical stimulation of the vagus. PMID:6332901

Many-body theory of electrical, thermal and optical response of molecular heterojunctions

NASA Astrophysics Data System (ADS)

Bergfield, Justin Phillip

In this work, we develop a many-body theory of electronic transport through single molecule junctions based on nonequilibrium Green's functions (NEGFs). The central quantity of this theory is the Coulomb self-energy matrix of the junction SigmaC. SigmaC is evaluated exactly in the sequential-tunneling limit, and the correction due to finite lead-molecule tunneling is evaluated using a conserving approximation based on diagrammatic perturbation theory on the Keldysh contour. In this way, tunneling processes are included to infinite order, meaning that any approximation utilized is a truncation in the physical processes considered rather than in the order of those processes. Our theory reproduces the key features of both the Coulomb blockade and coherent transport regimes simultaneously in a single unified theory. Nonperturbative effects of intramolecular correlations are included, which are necessary to accurately describe the highest occupied molecular orbital (HOMO)-lowest unoccupied molecular orbital (LUMO) gap, essential for a quantitative theory of transport. This work covers four major topics related to transport in single-molecule junctions. First, we use our many-body theory to calculate the nonlinear electrical response of the archetypal Au-1,4-benzenedithiol-Au junction and find irregularly shaped 'molecular diamonds' which have been experimentally observed in some larger molecules but which are inaccessible to existing theoretical approaches. Next, we extend our theory to include heat transport and develop an exact expression for the heat current in an interacting nanostructure. Using this result, we discover that quantum coherence can strongly enhance the thermoelectric response of a device, a result with a number of technological applications. We then develop the formalism to include multi-orbital lead-molecule contacts and multi-channel leads, both of which strongly affect the observable transport. Lastly, we include a dynamic screening correction to Sigma C and investigate the optoelectric response of several molecular junctions.

Liquid Argon TPC Signal Formation, Signal Processing and Hit Reconstruction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Baller, Bruce

2017-03-11

This document describes the early stage of the reconstruction chain that was developed for the ArgoNeuT and MicroBooNE experiments at Fermilab. These experiments study accelerator neutrino interactions that occur in a Liquid Argon Time Projection Chamber. Reconstructing the properties of particles produced in these interactions requires knowledge of the micro-physics processes that affect the creation and transport of ionization electrons to the readout system. A wire signal deconvolution technique was developed to convert wire signals to a standard form for hit reconstruction, to remove artifacts in the electronics chain and to remove coherent noise.

2009 weather and aeolian sand-transport data from the Colorado River corridor, Grand Canyon, Arizona

USGS Publications Warehouse

Draut, Amy E.; Sondossi, Hoda A.; Dealy, Timothy P.; Hazel, Joseph E.; Fairley, Helen C.; Brown, Christopher R.

2010-01-01

This report presents measurements of weather parameters and aeolian sand transport made in 2009 near selected archeological sites in the Colorado River corridor through Grand Canyon, Ariz. The quantitative methods and data discussed here form a basis for monitoring ecosystem processes that affect archeological-site stability. Combined with forthcoming work to evaluate landscape evolution at nearby archeological sites, these data can be used to document the relation between physical processes, including weather and aeolian sand transport, and their effects on the physical integrity of archeological sites. Data collected in 2009 reveal event- and seasonal-scale variations in rainfall, wind, temperature, humidity, and barometric pressure. Broad seasonal changes in aeolian sediment flux are also apparent at most study sites. Differences in weather patterns between 2008 and 2009 included an earlier spring windy season, greater spring precipitation even though 2009 annual rainfall totals were in general substantially lower than in 2008, and earlier onset of the reduced diurnal barometric-pressure fluctuations commonly associated with summer monsoon conditions. Weather patterns in middle to late 2009 were apparently affected by a transition of the ENSO cycle from a neutral phase to the El Ni?o phase. The continuation of monitoring that began in 2007, and installation of additional equipment at several new sites in early 2008, allowed evaluation of the effects of the March 2008 high-flow experiment (HFE) on aeolian sand transport. As reported earlier, at 2 of the 9 sites studied, spring and summer winds in 2008 reworked the HFE sandbars to form new aeolian dunes, where sand moved inland toward larger, well-established dune fields. Observations in 2009 showed that farther inland migration of the dune at one of those two sites is likely inhibited by vegetation. At the other location, the new aeolian dune form was found to have moved 10 m inland toward older, well-established dunes during 2009, resulting in landward transport of several hundred cubic meters of new sand upslope and above the elevation reached by the peak HFE water level.

Cholesterol metabolism and transport in the pathogenesis of Alzheimer's disease.

PubMed

Martins, Ian J; Berger, Tamar; Sharman, Matthew J; Verdile, Giuseppe; Fuller, Stephanie J; Martins, Ralph N

2009-12-01

Alzheimer's disease (AD) is the most common neurodegenerative disorder, affecting millions of people worldwide. Apart from age, the major risk factor identified so far for the sporadic form of AD is possession of the epsilon4 allele of apolipoprotein E (APOE), which is also a risk factor for coronary artery disease (CAD). Other apolipoproteins known to play an important role in CAD such as apolipoprotein B are now gaining attention for their role in AD as well. AD and CAD share other risk factors, such as altered cholesterol levels, particularly high levels of low density lipoproteins together with low levels of high density lipoproteins. Statins--drugs that have been used to lower cholesterol levels in CAD, have been shown to protect against AD, although the protective mechanism(s) involved are still under debate. Enzymatic production of the beta amyloid peptide, the peptide thought to play a major role in AD pathogenesis, is affected by membrane cholesterol levels. In addition, polymorphisms in several proteins and enzymes involved in cholesterol and lipoprotein transport and metabolism have been linked to risk of AD. Taken together, these findings provide strong evidence that changes in cholesterol metabolism are intimately involved in AD pathogenic processes. This paper reviews cholesterol metabolism and transport, as well as those aspects of cholesterol metabolism that have been linked with AD.

The Impacts of Phosphorus Deficiency on the Photosynthetic Electron Transport Chain.

PubMed

Carstensen, Andreas; Herdean, Andrei; Schmidt, Sidsel Birkelund; Sharma, Anurag; Spetea, Cornelia; Pribil, Mathias; Husted, Søren

2018-05-01

Phosphorus (P) is an essential macronutrient, and P deficiency limits plant productivity. Recent work showed that P deficiency affects electron transport to photosystem I (PSI), but the underlying mechanisms are unknown. Here, we present a comprehensive biological model describing how P deficiency disrupts the photosynthetic machinery and the electron transport chain through a series of sequential events in barley ( Hordeum vulgare ). P deficiency reduces the orthophosphate concentration in the chloroplast stroma to levels that inhibit ATP synthase activity. Consequently, protons accumulate in the thylakoids and cause lumen acidification, which inhibits linear electron flow. Limited plastoquinol oxidation retards electron transport to the cytochrome b 6 f complex, yet the electron transfer rate of PSI is increased under steady-state growth light and is limited under high-light conditions. Under P deficiency, the enhanced electron flow through PSI increases the levels of NADPH, whereas ATP production remains restricted and, hence, reduces CO 2 fixation. In parallel, lumen acidification activates the energy-dependent quenching component of the nonphotochemical quenching mechanism and prevents the overexcitation of photosystem II and damage to the leaf tissue. Consequently, plants can be severely affected by P deficiency for weeks without displaying any visual leaf symptoms. All of the processes in the photosynthetic machinery influenced by P deficiency appear to be fully reversible and can be restored in less than 60 min after resupply of orthophosphate to the leaf tissue. © 2018 American Society of Plant Biologists. All Rights Reserved.

Transient Point Infiltration In The Unsaturated Zone

NASA Astrophysics Data System (ADS)

Buecker-Gittel, M.; Mohrlok, U.

The risk assessment of leaking sewer pipes gets more and more important due to urban groundwater management and environmental as well as health safety. This requires the quantification and balancing of transport and transformation processes based on the water flow in the unsaturated zone. The water flow from a single sewer leakage could be described as a point infiltration with time varying hydraulic conditions externally and internally. External variations are caused by the discharge in the sewer pipe as well as the state of the leakage itself. Internal variations are the results of microbiological clogging effects associated with the transformation processes. Technical as well as small scale laboratory experiments were conducted in order to investigate the water transport from an transient point infiltration. From the technical scale experiment there was evidence that the water flow takes place under transient conditions when sewage infiltrates into an unsaturated soil. Whereas the small scale experiments investigated the hydraulics of the water transport and the associated so- lute and particle transport in unsaturated soils in detail. The small scale experiment was a two-dimensional representation of such a point infiltration source where the distributed water transport could be measured by several tensiometers in the soil as well as by a selective measurement of the discharge at the bottom of the experimental setup. Several series of experiments were conducted varying the boundary and initial con- ditions in order to derive the important parameters controlling the infiltration of pure water from the point source. The results showed that there is a significant difference between the infiltration rate in the point source and the discharge rate at the bottom, that could be explained by storage processes due to an outflow resistance at the bottom. This effect is overlayn by a decreasing water content decreases over time correlated with a decreasing infiltration rate. As expected the initial conditions mainly affects the time scale for the water transport. Additionally, the influence of preferential flow paths on the discharge distribution could be found due to the heterogenieties caused by the filling and compaction process of the sandy soil.

Opposite temperature effect on transport activity of KCC2/KCC4 and N(K)CCs in HEK-293 cells.

PubMed

Hartmann, Anna-Maria; Nothwang, Hans Gerd

2011-12-09

Cation chloride cotransporters play essential roles in many physiological processes such as volume regulation, transepithelial salt transport and setting the intracellular chloride concentration in neurons. They consist mainly of the inward transporters NCC, NKCC1, and NKCC2, and the outward transporters KCC1 to KCC4. To gain insight into regulatory and structure-function relationships, precise determination of their activity is required. Frequently, these analyses are performed in HEK-293 cells. Recently the activity of the inward transporters NKCC1 and NCC was shown to increase with temperature in these cells. However, the temperature effect on KCCs remains largely unknown. Here, we determined the temperature effect on KCC2 and KCC4 transport activity in HEK-293 cells. Both transporters demonstrated significantly higher transport activity (2.5 fold for KCC2 and 3.3 fold for KCC4) after pre-incubation at room temperature compared to 37°C. These data identify a reciprocal temperature dependence of cation chloride inward and outward cotransporters in HEK-293 cells. Thus, lower temperature should be used for functional characterization of KCC2 and KCC4 and higher temperatures for N(K)CCs in heterologous mammalian expression systems. Furthermore, if this reciprocal effect also applies to neurons, the action of inhibitory neurotransmitters might be more affected by changes in temperature than previously thought.

Tat transport of a Sec passenger leads to both completely translocated as well as membrane-arrested passenger proteins.

PubMed

Dittmar, Julia; Schlesier, René; Klösgen, Ralf Bernd

2014-02-01

We have studied the membrane transport of the chimeric precursor protein 16/33, which is composed of the Tat(1)-specific transport signal of OEC16 and the Sec passenger protein OEC33, both subunits of the oxygen-evolving system associated with photosystem II. Protein transport experiments performed with isolated pea thylakoids show that the 16/33 chimera is transported in a strictly Tat-dependent manner into the thylakoid vesicles yielding mature OEC33 (mOEC33) in two different topologies. One fraction accumulates in the thylakoid lumen and is thus resistant to externally added protease. A second fraction is arrested during transport in an N-in/C-out topology within the membrane. Chase experiments demonstrate that this membrane-arrested mOEC33 moiety does not represent a translocation intermediate but instead an alternative end product of the transport process. Transport arrest of mOEC33, which is embedded in the membrane with a mildly hydrophobic protein segment, requires more than 26 additional and predominantly hydrophilic residues C-terminal of the membrane-embedded segment. Furthermore, it is stimulated by mutations which potentially affect the conformation of mOEC33 suggesting that at least partial folding of the passenger protein is required for complete membrane translocation. Copyright © 2013 Elsevier B.V. All rights reserved.

A Biologically Informed, Mechanistic Model of Desert Shrub Population Dynamics Bearing on Arid Landscape Evolution

NASA Astrophysics Data System (ADS)

Worman, Stacey; Furbish, David; Fathel, Siobhan

2014-05-01

In arid landscapes, desert shrubs individually and collectively modify how sediment is transported (e.g by wind, overland-flow, and rain-splash). Addressing how desert shrubs modify landscapes on geomorphic timescales therefore necessitates spanning multiple shrub lifetimes and accounting for how processes affecting shrub dynamics on these longer timescales (e.g. fire, grazing, drought, and climate change) may in turn impact sediment transport. To fulfill this need, we present a mechanistic model of the spatiotemporal dynamics of a desert-shrub population that uses a simple accounting framework and tracks individual shrubs as they enter, age, and exit the population (via recruitment, growth, and mortality). Our model is novel insomuch as it (1) features a strong biophysical foundation, (2) mimics well-documented aspects of how shrub populations respond to changes in precipitation, and (3) possesses the process granularity appropriate for use in geomorphic simulations. In a complimentary abstract (Fathel et al. 2014), we demonstrate the potential of this biological model by coupling it to a physical model of rain-splash sediment transport: We mechanistically reproduce the empirical observation that the erosion rate of a hillslope decreases as its vegetation coverage increases and we predict erosion rates under different climate-change scenarios.

Lunar Swirls: Plasma Magnetic Field Interaction and Dust Transport

NASA Astrophysics Data System (ADS)

Dropmann, Michael; Laufer, Rene; Herdrich, Georg; Matthews, Lorin; Hyde, Truell

2013-10-01

In close collaboration between the Center for Astrophysics, Space Physics and Engineering Research (CASPER) at Baylor University, Texas, and the Institute of Space Systems (IRS) at the University of Stuttgart, Germany, two plasma facilities have been established using the Inductively heated Plasma Generator 6 (IPG6), based on proven IRS designs. A wide range of applications is currently under consideration for both test and research facilities. Basic investigations in the area of plasma radiation and catalysis, simulation of certain parameters of fusion divertors and space applications are planned. In this paper, the facility at Baylor University (IPG6-B) will be used for simulation of mini-magnetospheres on the Moon. The interaction of the solar wind with magnetic fields leads to the formation of electric fields, which can influence the incoming solar wind ion flux and affect dust transport processes on the lunar surface. Both effects may be partially responsible for the occurrence of lunar swirls. Interactions of the solar wind with such mini-magnetospheres will be simulated in the IPG6-B by observing the interaction between a plasma jet and a permanent magnet. The resulting data should lead to better models of dust transport processes and solar wind deflection on the moon.

A guide to Ussing chamber studies of mouse intestine

PubMed Central

Clarke, Lane L.

2009-01-01

The Ussing chamber provides a physiological system to measure the transport of ions, nutrients, and drugs across various epithelial tissues. One of the most studied epithelia is the intestine, which has provided several landmark discoveries regarding the mechanisms of ion transport processes. Adaptation of this method to mouse intestine adds the dimension of investigating genetic loss or gain of function as a means to identify proteins or processes affecting transepithelial transport. In this review, the principles underlying the use of Ussing chambers are outlined including limitations and advantages of the technique. With an emphasis on mouse intestinal preparations, the review covers chamber design, commercial equipment sources, tissue preparation, step-by-step instruction for operation, troubleshooting, and examples of interpretation difficulties. Specialized uses of the Ussing chamber such as the pH stat technique to measure transepithelial bicarbonate secretion and isotopic flux methods to measure net secretion or absorption of substrates are discussed in detail, and examples are given for the adaptation of Ussing chamber principles to other measurement systems. The purpose of the review is to provide a practical guide for investigators who are new to the Ussing chamber method. PMID:19342508

Storm-scale dynamics of bacterial community composition in throughfall and stemflow

NASA Astrophysics Data System (ADS)

Van Stan, J. T., II; Teachey, M. E.; Pound, P.; Ottesen, E. A.

2017-12-01

Transport of bacteria between ecosystem spheres can significantly affect microbially-mediated biogeochemical processes. During rainfall, there is a large, temporally-concentrated exchange of bacteria between the forest phyllosphere and the pedosphere by rain dripping from canopy surfaces, as throughfall (TF), and draining to the stem, as stemflow (SF). Many phyllosphere bacteria possibly transported by TF and SF have been linked to important litter and soil processes (like cyanobacteria and actinobacteria). Despite this, no work has applied high throughput DNA sequencing to assess the community composition of bacteria transported by TF and SF. We characterized bacterial community composition for TF and SF from an epiphyte-laden (Tillandsia usneoides L., Spanish moss) southern live oak (Quercus virginiana) forest in southeastern Georgia (USA) to address two hypotheses: that bacterial community composition will differ between (1) TF and SF, and (2) TF sampled beneath bare and epiphyte-laden canopy. Variability in family-level bacterial abundance, Bray-Curtis dissimilarity, and Shannon diversity index was greater between storms than between net rainfall fluxes. In fact, TF and SF bacterial communities were relatively similar for individual storms and may be driven by pre-storm atmospheric deposition rather than the communities affixed to leaves, bark, and epiphyte surfaces.

Processive movement of single kinesins on crowded microtubules visualized using quantum dots

PubMed Central

Seitz, Arne; Surrey, Thomas

2006-01-01

Kinesin-1 is a processive molecular motor transporting cargo along microtubules. Inside cells, several motors and microtubule-associated proteins compete for binding to microtubules. Therefore, the question arises how processive movement of kinesin-1 is affected by crowding on the microtubule. Here we use total internal reflection fluorescence microscopy to image in vitro the runs of single quantum dot-labelled kinesins on crowded microtubules under steady-state conditions and to measure the degree of crowding on a microtubule at steady-state. We find that the runs of kinesins are little affected by high kinesin densities on a microtubule. However, the presence of high densities of a mutant kinesin that is not able to step efficiently reduces the average speed of wild-type kinesin, while hardly changing its processivity. This indicates that kinesin waits in a strongly bound state on the microtubule when encountering an obstacle until the obstacle unbinds and frees the binding site for kinesin's next step. A simple kinetic model can explain quantitatively the behaviour of kinesin under both crowding conditions. PMID:16407972

Effects of shear flow on phase nucleation and crystallization.

PubMed

Mura, Federica; Zaccone, Alessio

2016-04-01

Classical nucleation theory offers a good framework for understanding the common features of new phase formation processes in metastable homogeneous media at rest. However, nucleation processes in liquids are ubiquitously affected by hydrodynamic flow, and there is no satisfactory understanding of whether shear promotes or slows down the nucleation process. We developed a classical nucleation theory for sheared systems starting from the molecular level of the Becker-Doering master kinetic equation and we analytically derived a closed-form expression for the nucleation rate. The theory accounts for the effect of flow-mediated transport of molecules to the nucleus of the new phase, as well as for the mechanical deformation imparted to the nucleus by the flow field. The competition between flow-induced molecular transport, which accelerates nucleation, and flow-induced nucleus straining, which lowers the nucleation rate by increasing the nucleation energy barrier, gives rise to a marked nonmonotonic dependence of the nucleation rate on the shear rate. The theory predicts an optimal shear rate at which the nucleation rate is one order of magnitude larger than in the absence of flow.

Chronic blockade or constitutive deletion of the serotonin transporter reduces operant responding for food reward.

PubMed

Sanders, Amy Cecilia; Hussain, Ali J; Hen, René; Zhuang, Xiaoxi

2007-11-01

The therapeutic effects of chronic selective serotonin reuptake inhibitors (SSRIs) are well documented, yet the elementary behavioral processes that are affected by such treatment have not been fully investigated. We report here the effects of chronic fluoxetine treatment and genetic deletion of the serotonin transporter (SERT) on food reinforced behavior in three paradigms: the progressive ratio operant task, the concurrent choice operant task, and the Pavlovian-to-Instrumental transfer task. We consistently find that chronic pharmacological blockade or genetic deletion of SERT result in similar behavioral consequences: reduced operant responding for natural reward. This is in line with previous studies reporting declines in operant responding for drugs and intracranial self-stimulation with fluoxetine treatment, suggesting that the effect of SERT blockade can be generalized to different reward types. Detailed analyses of behavioral parameters indicate that this reduction in operant responding affect both goal-directed and non-goal-directed behaviors without affecting the Pavlovian cue-triggered excessive operant responding. In addition, both pharmacological and genetic manipulations reduce locomotor activity in the open field novel environment. Our data contrast with the effect of dopamine in increasing operant responding for natural reward specifically in goal-directed behaviors and in increasing Pavlovian cue-triggered excessive operant responding. Serotonin and dopamine have been proposed to serve opposing functions in motivational processes. Our data suggest that their interactions do not result in simple opponency. The fact that pharmacological blockade and genetic deletion of SERT have similar behavioral consequences reinforces the utility of the SERT null mice for investigation of the mechanisms underlying chronic SSRIs treatment.

Silicon-Based Examination of Gamma-Ray and Neutron Interactions with Solid State Materials

DTIC Science & Technology

2018-05-02

The objective of the research was to develop a fundamental understanding of the processes by which charge carriers interact in semiconductor...materials in order to aid in the development of advanced radiation detection materials. During the first three years of the research, our focus was primarily...the contact behavior and affect the charge transport. That information has been applied to single-crystal cadmium-zinc-telluride (CZT) and lead

Fate and Contribution of Internal Wave-Forced Barnacle Settlers to Community Structure in Northern Baja California, a Year after Settlement

NASA Astrophysics Data System (ADS)

Lievana, A.; Ladah, L. B.; Lavin, M. F.; Filonov, A. E.; Tapia, F. J.; Leichter, J.; Valencia Gasti, J. A.

2016-02-01

Physical transport processes, such as nonlinear internal waves, operating within the coastal ocean of Baja California, Mexico, are diverse, variable and operate on a variety of temporal and spatial scales. Understanding the influence of nonlinear internal waves, in part responsible for the exchange of water properties between coastal and offshore environments, on the structure of intertidal communities is important for the generation of working ecological models. The relationship between the supply of ecological subsidies associated with physical transport processes that operate on relatively short spatial and temporal scales, such as the internal tide, and intertidal community structure must be understood as processes that operate on distinct spatial and temporal scales may be prone to react uniquely as the climate changes. We designed an experiment to quantify recruitment and adult survivorship of Chthamalus sp. whose settlement was associated with internal wave activity in the nearby ocean and found that the number of settlers was a robust predictor of the number of adults observed, indicating that post-settlement processes such as competition and predation are not likely to significantly affect the structure of the intertidal barnacle community resulting from internal-wave forced settlement.

Predicting indoor pollutant concentrations, and applications to air quality management

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lorenzetti, David M.

Because most people spend more than 90% of their time indoors, predicting exposure to airborne pollutants requires models that incorporate the effect of buildings. Buildings affect the exposure of their occupants in a number of ways, both by design (for example, filters in ventilation systems remove particles) and incidentally (for example, sorption on walls can reduce peak concentrations, but prolong exposure to semivolatile organic compounds). Furthermore, building materials and occupant activities can generate pollutants. Indoor air quality depends not only on outdoor air quality, but also on the design, maintenance, and use of the building. For example, ''sick building'' symptomsmore » such as respiratory problems and headaches have been related to the presence of air-conditioning systems, to carpeting, to low ventilation rates, and to high occupant density (1). The physical processes of interest apply even in simple structures such as homes. Indoor air quality models simulate the processes, such as ventilation and filtration, that control pollutant concentrations in a building. Section 2 describes the modeling approach, and the important transport processes in buildings. Because advection usually dominates among the transport processes, Sections 3 and 4 describe methods for predicting airflows. The concluding section summarizes the application of these models.« less

Lunar studies

NASA Technical Reports Server (NTRS)

Gold, T.

1979-01-01

Experimental and theoretical research, concerning lunar surface processes and the nature, origin and derivation of the lunar surface cover, conducted during the period of February 1, 1971 through January 31, 1976 is presented. The principle research involved were: (1) electrostatic dust motion and transport process; (2) seismology properties of fine rock powders in lunar conditions; (3) surface processes that darken the lunar soil and affect the surface chemical properties of the soil grains; (4) laser simulation of micrometeorite impacts (estimation of the erosion rate caused by the microemeteorite flux); (5) the exposure history of the lunar regolith; and (6) destruction of amino acids by exposure to a simulation of the solar wind at the lunar surface. Research papers are presented which cover these general topics.

The Effects of Subsurface Bioremediation on Soil Structure, Colloid Formation, and Contaminant Transport

NASA Astrophysics Data System (ADS)

Wang, Y.; Liang, X.; Zhuang, J.; Radosevich, M.

2016-12-01

Anaerobic bioremediation is widely applied to create anaerobic subsurface conditions designed to stimulate microorganisms that degrade organic contaminants and immobilize toxic metals in situ. Anaerobic conditions that accompany such techniques also promotes microbially mediated Fe(III)-oxide mineral reduction. The reduction of Fe(III) could potentially cause soil structure breakdown, formation of clay colloids, and alternation of soil surface chemical properties. These processes could then affect bioremediation and the migration of contaminants. Column experiments were conducted to investigate the impact of anaerobic bioreduction on soil structure, hydraulic properties, colloid formation, and transport of three tracers (bromide, DFBA, and silica shelled silver nanoparticles). Columns packed with inoculated water stable soil aggregates were placed in anaerobic glovebox, and artificial groundwater media was pumped into the columns to simulate anaerobic bioreduction process for four weeks. Decent amount of soluble Fe(II) accompanied by colloids were detected in the effluent from bioreduction columns a week after initiation of bioreduction treatment, which demonstrated bioreduction of Fe(III) and formation of colloids. Transport experiments were performed in the columns before and after bioreduction process to assess the changes of hydraulic and surface chemical properties through bioreduction treatment. Earlier breakthrough of bromide and DFBA after treatment indicated alterations in flow paths (formation of preferential flow paths). Less dispersion of bromide and DFBA, and less tailing of DFBA after treatment implied breakdown of soil aggregates. Dramatically enhanced transport and early breakthrough of silica shelled silver nanoparticles after treatment supported the above conclusion of alterations in flow paths, and indicated changes of soil surface chemical properties.

Hybrid discrete-continuum modeling for transport, biofilm development and solid restructuring including electrostatic effects

NASA Astrophysics Data System (ADS)

Prechtel, Alexander; Ray, Nadja; Rupp, Andreas

2017-04-01

We want to present an approach for the mathematical, mechanistic modeling and numerical treatment of processes leading to the formation, stability, and turnover of soil micro-aggregates. This aims at deterministic aggregation models including detailed mechanistic pore-scale descriptions to account for the interplay of geochemistry and microbiology, and the link to soil functions as, e.g., the porosity. We therefore consider processes at the pore scale and the mesoscale (laboratory scale). At the pore scale transport by diffusion, advection, and drift emerging from electric forces can be taken into account, in addition to homogeneous and heterogeneous reactions of species. In the context of soil micro-aggregates the growth of biofilms or other glueing substances as EPS (extracellular polymeric substances) is important and affects the structure of the pore space in space and time. This model is upscaled mathematically in the framework of (periodic) homogenization to transfer it to the mesoscale resulting in effective coefficients/parameters there. This micro-macro model thus couples macroscopic equations that describe the transport and fluid flow at the scale of the porous medium (mesoscale) with averaged time- and space-dependent coefficient functions. These functions may be explicitly computed by means of auxiliary cell problems (microscale). Finally, the pore space in which the cell problems are defined is time and space dependent and its geometry inherits information from the transport equation's solutions. The microscale problems rely on versatile combinations of cellular automata and discontiuous Galerkin methods while on the mesoscale mixed finite elements are used. The numerical simulations allow to study the interplay between these processes.

Nitrogen and phosphorus in the Upper Mississippi River: Transport, processing, and effects on the river ecosystem

USGS Publications Warehouse

Houser, J.N.; Richardson, W.B.

2010-01-01

Existing research on nutrients (nitrogen and phosphorus) in the Upper Mississippi River (UMR) can be organized into the following categories: (1) Long-term changes in nutrient concentrations and export, and their causes; (2) Nutrient cycling within the river; (3) Spatial and temporal patterns of river nutrient concentrations; (4) Effects of elevated nutrient concentrations on the river; and (5) Actions to reduce river nutrient concentrations and flux. Nutrient concentration and flux in the Mississippi River have increased substantially over the last century because of changes in land use, climate, hydrology, and river management and engineering. As in other large floodplain rivers, rates of processes that cycle nitrogen and phosphorus in the UMR exhibit pronounced spatial and temporal heterogeneity because of the complex morphology of the river. This spatial variability in nutrient processing creates clear spatial patterns in nutrient concentrations. For example, nitrate concentrations generally are much lower in off-channel areas than in the main channel. The specifics of in-river nutrient cycling and the effects of high rates of nutrient input on UMR have been less studied than the factors affecting nutrient input to the river and transport to the Gulf of Mexico, and important questions concerning nutrient cycling in the UMR remain. Eutrophication and resulting changes in river productivity have only recently been investigated the UMR. These recent studies indicate that the high nutrient concentrations in the river may affect community composition of aquatic vegetation (e. g., the abundance of filamentous algae and duckweeds), dissolved oxygen concentrations in off-channel areas, and the abundance of cyanobacteria. Actions to reduce nutrient input to the river include changes in land-use practices, wetland restoration, and hydrological modifications to the river. Evidence suggests that most of the above methods can contribute to reducing nutrient concentration in, and transport by, the UMR, but the impacts of mitigation efforts will likely be only slowly realized. ?? USGS, US Government 2010.

Transport coefficients and heat fluxes in non-equilibrium high-temperature flows with electronic excitation

NASA Astrophysics Data System (ADS)

Istomin, V. A.; Kustova, E. V.

2017-02-01

The influence of electronic excitation on transport processes in non-equilibrium high-temperature ionized mixture flows is studied. Two five-component mixtures, N 2 / N2 + / N / N + / e - and O 2 / O2 + / O / O + / e - , are considered taking into account the electronic degrees of freedom for atomic species as well as the rotational-vibrational-electronic degrees of freedom for molecular species, both neutral and ionized. Using the modified Chapman-Enskog method, the transport coefficients (thermal conductivity, shear viscosity and bulk viscosity, diffusion and thermal diffusion) are calculated in the temperature range 500-50 000 K. Thermal conductivity and bulk viscosity coefficients are strongly affected by electronic states, especially for neutral atomic species. Shear viscosity, diffusion, and thermal diffusion coefficients are not sensible to electronic excitation if the size of excited states is assumed to be constant. The limits of applicability for the Stokes relation are discussed; at high temperatures, this relation is violated not only for molecular species but also for electronically excited atomic gases. Two test cases of strongly non-equilibrium flows behind plane shock waves corresponding to the spacecraft re-entry (Hermes and Fire II) are simulated numerically. Fluid-dynamic variables and heat fluxes are evaluated in gases with electronic excitation. In inviscid flows without chemical-radiative coupling, the flow-field is weakly affected by electronic states; however, in viscous flows, their influence can be more important, in particular, on the convective heat flux. The contribution of different dissipative processes to the heat transfer is evaluated as well as the effect of reaction rate coefficients. The competition of diffusion and heat conduction processes reduces the overall effect of electronic excitation on the convective heating, especially for the Fire II test case. It is shown that reliable models of chemical reaction rates are of great importance for accurate predictions of the fluid dynamic variables and heat fluxes.

Ovarian fragment sizes affect viability and morphology of preantral follicles during storage at 4°C

USDA-ARS?s Scientific Manuscript database

The efficient transportation of ovarian tissues is affected b various factors compromising their viability. We tested various ovarian sample sizes (whole ovary, biopsy, and transplantation size) during various transportation times....

Scaling considerations related to interactions of hydrologic, pedologic and geomorphic processes (Invited)

NASA Astrophysics Data System (ADS)

Sidle, R. C.

2013-12-01

Hydrologic, pedologic, and geomorphic processes are strongly interrelated and affected by scale. These interactions exert important controls on runoff generation, preferential flow, contaminant transport, surface erosion, and mass wasting. Measurement of hydraulic conductivity (K) and infiltration capacity at small scales generally underestimates these values for application at larger field, hillslope, or catchment scales. Both vertical and slope-parallel saturated flow and related contaminant transport are often influenced by interconnected networks of preferential flow paths, which are not captured in K measurements derived from soil cores. Using such K values in models may underestimate water and contaminant fluxes and runoff peaks. As shown in small-scale runoff plot studies, infiltration rates are typically lower than integrated infiltration across a hillslope or in headwater catchments. The resultant greater infiltration-excess overland flow in small plots compared to larger landscapes is attributed to the lack of preferential flow continuity; plot border effects; greater homogeneity of rainfall inputs, topography and soil physical properties; and magnified effects of hydrophobicity in small plots. At the hillslope scale, isolated areas with high infiltration capacity can greatly reduce surface runoff and surface erosion at the hillslope scale. These hydropedologic and hydrogeomorphic processes are also relevant to both occurrence and timing of landslides. The focus of many landslide studies has typically been either on small-scale vadose zone process and how these affect soil mechanical properties or on larger scale, more descriptive geomorphic studies. One of the issues in translating laboratory-based investigations on geotechnical behavior of soils to field scales where landslides occur is the characterization of large-scale hydrological processes and flow paths that occur in heterogeneous and anisotropic porous media. These processes are not only affected by the spatial distribution of soil physical properties and bioturbations, but also by geomorphic attributes. Interactions among preferential flow paths can induce rapid pore water pressure response within soil mantles and trigger landslides during storm peaks. Alternatively, in poorly developed and unstructured soils, infiltration occurs mainly through the soil matrix and a lag time exists between the rainfall peak and development of pore water pressures at depth. Deep, slow-moving mass failures are also strongly controlled by secondary porosity within the regolith with the timing of activation linked to recharge dynamics. As such, understanding both small and larger scale processes is needed to estimate geomorphic impacts, as well as streamflow generation and contaminant migration.

Effect of Fuel Additives on Spray Performance of Alternative Jet Fuels

NASA Astrophysics Data System (ADS)

Kannaiyan, Kumaran; Sadr, Reza

2015-11-01

Role of alternative fuels on reducing the combustion pollutants is gaining momentum in both land and air transport. Recent studies have shown that addition of nanoscale metal particles as fuel additives to liquid fuels have a positive effect not only on their combustion performance but also in reducing the pollutant formation. However, most of those studies are still in the early stages of investigation with the addition of nanoparticles at low weight percentages. Such an addition can affect the hydrodynamic and thermo-physical properties of the fuel. In this study, the near nozzle spray performance of gas-to-liquid jet fuel with and without the addition of alumina nanoparticles are investigated at macro- and microscopic levels using optical diagnostic techniques. At macroscopic level, the addition of nanoparticles is seen to enhance the sheet breakup process when compared to that of the base fuel. Furthermore, the microscopic spray characteristics such as droplet size and velocity are also found to be affected. Although the addition of nanoscale metal particles at low weight percentages does not affect the bulk fluid properties, the atomization process is found to be affected in the near nozzle region. Funded by Qatar National Research Fund.

Linked Hydrologic-Hydrodynamic Model Framework to Forecast Impacts of Rivers on Beach Water Quality

NASA Astrophysics Data System (ADS)

Anderson, E. J.; Fry, L. M.; Kramer, E.; Ritzenthaler, A.

2014-12-01

The goal of NOAA's beach quality forecasting program is to use a multi-faceted approach to aid in detection and prediction of bacteria in recreational waters. In particular, our focus has been on the connection between tributary loads and bacteria concentrations at nearby beaches. While there is a clear link between stormwater runoff and beach water quality, quantifying the contribution of river loadings to nearshore bacterial concentrations is complicated due to multiple processes that drive bacterial concentrations in rivers as well as those processes affecting the fate and transport of bacteria upon exiting the rivers. In order to forecast potential impacts of rivers on beach water quality, we developed a linked hydrologic-hydrodynamic water quality framework that simulates accumulation and washoff of bacteria from the landscape, and then predicts the fate and transport of washed off bacteria from the watershed to the coastal zone. The framework includes a watershed model (IHACRES) to predict fecal indicator bacteria (FIB) loadings to the coastal environment (accumulation, wash-off, die-off) as a function of effective rainfall. These loadings are input into a coastal hydrodynamic model (FVCOM), including a bacteria transport model (Lagrangian particle), to simulate 3D bacteria transport within the coastal environment. This modeling system provides predictive tools to assist local managers in decision-making to reduce human health threats.

Shoot Na+ exclusion and increased salinity tolerance engineered by cell type-specific alteration of Na+ transport in Arabidopsis.

PubMed

Møller, Inge S; Gilliham, Matthew; Jha, Deepa; Mayo, Gwenda M; Roy, Stuart J; Coates, Juliet C; Haseloff, Jim; Tester, Mark

2009-07-01

Soil salinity affects large areas of cultivated land, causing significant reductions in crop yield globally. The Na+ toxicity of many crop plants is correlated with overaccumulation of Na+ in the shoot. We have previously suggested that the engineering of Na+ exclusion from the shoot could be achieved through an alteration of plasma membrane Na+ transport processes in the root, if these alterations were cell type specific. Here, it is shown that expression of the Na+ transporter HKT1;1 in the mature root stele of Arabidopsis thaliana decreases Na+ accumulation in the shoot by 37 to 64%. The expression of HKT1;1 specifically in the mature root stele is achieved using an enhancer trap expression system for specific and strong overexpression. The effect in the shoot is caused by the increased influx, mediated by HKT1;1, of Na+ into stelar root cells, which is demonstrated in planta and leads to a reduction of root-to-shoot transfer of Na+. Plants with reduced shoot Na+ also have increased salinity tolerance. By contrast, plants constitutively expressing HKT1;1 driven by the cauliflower mosaic virus 35S promoter accumulated high shoot Na+ and grew poorly. Our results demonstrate that the modification of a specific Na+ transport process in specific cell types can reduce shoot Na+ accumulation, an important component of salinity tolerance of many higher plants.

Evaluation Of Four Welding Arc Processes Applied To 6061 Aluminium Alloy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Benoit, A.; Laboratoire de Genie des Materiaux et Procedes Associes; Paillard, P.

At a time when greenhouse gas emissions must be reduced, the use of the aluminium alloys is expanding, in particular in the transportation industry. In order to extend the possibilities of aluminium assembly design, new Metal Inert Gas (MIG) welding processes have been conceived. They work at lower temperatures than usual arc processes (classic MIG or Tungsten Inert Gas). This study compares four arc welding processes, applied to the 6061 aluminium alloy. These four weld processes have been studied through the metallurgical analysis of the weld beads. Metallography, micro-hardness testings, X Ray radiography have been carried out on the producedmore » weld beads. The processes are classified according to the quality of the beads like geometry of beads, size of the heat affected zone and presence of defects.« less

Facilities, breed and experience affect ease of sheep handling: the livestock transporter's perspective.

PubMed

Burnard, C L; Pitchford, W S; Hocking Edwards, J E; Hazel, S J

2015-08-01

An understanding of the perceived importance of a variety of factors affecting the ease of handling of sheep and the interactions between these factors is valuable in improving profitability and welfare of the livestock. Many factors may contribute to animal behaviour during handling, and traditionally these factors have been assessed in isolation under experimental conditions. A human social component to this phenomenon also exists. The aim of this study was to gain a deeper understanding of the importance of a variety of factors affecting ease of handling, and the interactions between these from the perspective of the livestock transporter. Qualitative interviews were used to investigate the factors affecting sheep behaviour during handling. Interview transcripts underwent thematic analysis. Livestock transporters discussed the effects of attitudes and behaviours towards sheep, helpers, facilities, distractions, environment, dogs and a variety of sheep factors including breed, preparation, experience and sex on sheep behaviour during handling. Transporters demonstrated care and empathy and stated that patience and experience were key factors determining how a person might deal with difficult sheep. Livestock transporters strongly believed facilities (ramps and yards) had the greatest impact, followed by sheep experience (naivety of the sheep to handling and transport) and breed. Transporters also discussed the effects of distractions, time of day, weather, dogs, other people, sheep preparation, body condition and sheep sex on ease of handling. The concept of individual sheep temperament was indirectly expressed.

Laboratory experimental investigation of heat transport in fractured media

NASA Astrophysics Data System (ADS)

Cherubini, Claudia; Pastore, Nicola; Giasi, Concetta I.; Allegretti, Nicoletta Maria

2017-01-01

Low enthalpy geothermal energy is a renewable resource that is still underexploited nowadays in relation to its potential for development in society worldwide. Most of its applications have already been investigated, such as heating and cooling of private and public buildings, road defrosting, cooling of industrial processes, food drying systems or desalination. Geothermal power development is a long, risky and expensive process. It basically consists of successive development stages aimed at locating the resources (exploration), confirming the power generating capacity of the reservoir (confirmation) and building the power plant and associated structures (site development). Different factors intervene in influencing the length, difficulty and materials required for these phases, thereby affecting their cost. One of the major limitations related to the installation of low enthalpy geothermal power plants regards the initial development steps that are risky and the upfront capital costs that are huge. Most of the total cost of geothermal power is related to the reimbursement of invested capital and associated returns. In order to increase the optimal efficiency of installations which use groundwater as a geothermal resource, flow and heat transport dynamics in aquifers need to be well characterized. Especially in fractured rock aquifers these processes represent critical elements that are not well known. Therefore there is a tendency to oversize geothermal plants. In the literature there are very few studies on heat transport, especially on fractured media. This study is aimed at deepening the understanding of this topic through heat transport experiments in fractured networks and their interpretation. Heat transfer tests have been carried out on the experimental apparatus previously employed to perform flow and tracer transport experiments, which has been modified in order to analyze heat transport dynamics in a network of fractures. In order to model the obtained thermal breakthrough curves, the Explicit Network Model (ENM) has been used, which is based on an adaptation of Tang's solution for the transport of the solutes in a semi-infinite single fracture embedded in a porous matrix. Parameter estimation, time moment analysis, tailing character and other dimensionless parameters have permitted a better understanding of the dynamics of heat transport and the efficiency of heat exchange between the fractures and the matrix. The results have been compared with the previous experimental studies on solute transport.

The interplay between estuarine transport and biogeochemical processes in determining the nutrient conditions in bottom layers of non-tidal Gulf of Finland

NASA Astrophysics Data System (ADS)

Kõuts, Mariliis; Raudsepp, Urmas; Maljutenko, Ilja

2017-04-01

In coastal areas, especially estuaries, spatial distribution and seasonal cycling of chemical and biological variables is largely determined by local biogeochemical processes and water transport of different properties. In tidal estuaries, however, biogeochemical processes are affected by tides as frequent water exchange alters nutrient and oxygen concentrations. In wide and deep non-tidal estuary-type marginal seas spatial distribution and seasonal cycling are determined by the mixture of water transport and local biogeochemistry. The Baltic Sea is a stratified water basin where halocline divides the water column into two parts: upper layer, which is horizontally uniform in terms of distribution of chemical and biological parameters, and has clear seasonal cycle; and bottom part, where nutrient and oxygen dynamics is more complex. There water transport and sediment-water interface fluxes play a major role. Our prime focus is the Gulf of Finland in the Baltic Sea. It is a wide, non-tidal and stratified sub-basin known for its high nutrient concentrations and severe oxygen deficiency in summer. We modelled the Baltic Sea (including Gulf of Finland) using ERGOM, a biogeochemical model coupled with circulation model GETM. Seasonal cycling and water circulation were observed with a 40-year simulation from 1966 to 2006. Our results show that in shallow areas above halocline the seasonal cycle of phytoplankton, nutrients and oxygen concentrations is uniform in space. Water circulation does not create inhomogeneous distribution pattern of biogeochemical parameters and their seasonal cycle. The circulation in the Gulf of Finland is strongly modulated by the seasonality of estuarine transport. Below the halocline saline low-oxygen and nutrient-rich water is transported from the open Baltic Proper to the Gulf of Finland in spring and early summer. This results in the highest nutrient concentrations and the poorest oxygen conditions by the end of August. In the shallow area nutrients have high concentrations in March-April before the spring bloom of diatoms starts. Low oxygen and nutrient concentrations are observed at the end of August. There is a qualitative difference of nutrient dynamics between shallow and deep layers but quantification of the role of transport and local biogeochemical processes is still challenging.

Spatiotemporal observation of transport in fractured rocks

NASA Astrophysics Data System (ADS)

Kulenkampff, Johannes; Enzmann, Frieder; Gründig, Marion; Mittmann, Hellmuth; Wolf, Martin

2010-05-01

A number of injection experiments in different rocks types have been conducted with positron emission-process-tomography using a high-resolution "small-animal" PET-scanner (ClearPET by Raytest, Straubenhardt) for the monitoring of transport processes. The fluids are labelled with positron-emitting isotopes like e.g. 18F-, 124I- or dissolvable complexes like K3[58Co(CN)6], without affecting their physico-chemical properties. The annihilation radiation from individual decaying tracer atoms is detected with high sensitivity, and the tomographic reconstruction of the recorded events yields quantitative 3D-images of the tracer distribution. Sequential tomograms during and after tracer injection are used for the spatiotemporal observation of the fluid transport. Raw data is corrected with respect to background radiation (randoms) and Compton scattering, which turns out to be much more significant in rocks than in common biomedical applications. Although in principle these effects are exactly known, we developed and apply simplified and fast correction methods. Deficiencies of these correction algorithms generate some artefacts, that cause the lower limit of the tracer concentration in the order of 1 kBq/?l or about 107 atoms/?l, still outranging other methods (e.g. NMR or resistivity tomography) by many orders of magnitude. New 3D-visualizations of the process-tomograms in fractured rocks show strongly localized and complex flow paths and in parts unexpected deviations from the fracture structures as deduced from ?CT-images. Such results demonstrate the potential of large discrepancies between ?CT-derived parameters like pore volume and specific surface area and the hydraulic effective parameters as derived by means of the PET-process-tomography. We conclude that such discrepancies and the complexity of the transport process in natural heterogeneous porous media illustrates the limits of parameter determination methods from model simulations based on structural pore-space models - in particular as long as the simulations are not verified by experimental data.

An update on the regulation of photosynthesis by thylakoid ion channels and transporters in Arabidopsis.

PubMed

Spetea, Cornelia; Herdean, Andrei; Allorent, Guillaume; Carraretto, Luca; Finazzi, Giovanni; Szabo, Ildikò

2017-09-01

In natural, variable environments, plants rapidly adjust photosynthesis for optimal balance between light absorption and utilization. There is increasing evidence suggesting that ion fluxes across the chloroplast thylakoid membrane play an important role in this regulation by affecting the proton motive force and consequently photosynthesis and thylakoid membrane ultrastructure. This article presents an update on the thylakoid ion channels and transporters characterized in Arabidopsis thaliana as being involved in these processes, as well as an outlook at the evolutionary conservation of their functions in other photosynthetic organisms. This is a contribution to shed light on the thylakoid network of ion fluxes and how they help plants to adjust photosynthesis in variable light environments. © 2017 Scandinavian Plant Physiology Society.

Transport by SLC5A8 with subsequent inhibition of histone deacetylase 1 (HDAC1) and HDAC3 underlies the antitumor activity of 3-bromopyruvate.

PubMed

Thangaraju, Muthusamy; Karunakaran, Senthil K; Itagaki, Shiro; Gopal, Elangovan; Elangovan, Selvakumar; Prasad, Puttur D; Ganapathy, Vadivel

2009-10-15

3-bromopyruvate is an alkylating agent with antitumor activity. It is currently believed that blockade of adenosine triphosphate production from glycolysis and mitochondria is the primary mechanism responsible for this antitumor effect. The current studies uncovered a new and novel mechanism for the antitumor activity of 3-bromopyruvate. The transport of 3-bromopyruvate by sodium-coupled monocarboxylate transporter SMCT1 (SLC5A8), a tumor suppressor and a sodium (Na+)-coupled, electrogenic transporter for short-chain monocarboxylates, was studied using a mammalian cell expression and the Xenopus laevis oocyte expression systems. The effect of 3-bromopyruvate on histone deacetylases (HDACs) was monitored using the lysate of the human breast cancer cell line MCF7 and human recombinant HDAC isoforms as the enzyme sources. Cell viability was monitored by fluorescence-activated cell-sorting analysis and colony-formation assay. The acetylation status of histone H4 was evaluated by Western blot analysis. 3-Bromopyruvate is a transportable substrate for SLC5A8, and that transport process is Na+-coupled and electrogenic. MCF7 cells did not express SLC5A8 and were not affected by 3-bromopyruvate. However, when transfected with SLC5A8 or treated with inhibitors of DNA methylation, these cells underwent apoptosis in the presence of 3-bromopyruvate. This cell death was associated with the inhibition of HDAC1/HDAC3. Studies with different isoforms of human recombinant HDACs identified HDAC1 and HDAC3 as the targets for 3-bromopyruvate. 3-Bromopyruvate was transported into cells actively through the tumor suppressor SLC5A8, and the process was energized by an electrochemical Na+ gradient. Ectopic expression of the transporter in MCF7 cells led to apoptosis, and the mechanism involved the inhibition of HDAC1/HDAC3. Copyright (c) 2009 American Cancer Society.

The future of transportation in society: Forces of change

NASA Technical Reports Server (NTRS)

Richardson, Barbara C.

1996-01-01

The transportation system is a critical element of the social / political / economic system of the United States. Factors influencing the use of transportation technology include technology push, market pull, and external factors. In order for new transportation technology to be successful, it must meet the needs of the market. These needs are diverse and vary almost by individual. Historical trends show great changes in transportation use by mode and origins and destinations of trips. Other important changes in society affecting transportation use include changes in the composition of society by gender, age, national origin, family composition, land use, income, and residential distribution. Changes of these factors in the future and how technology is deployed to meet the changing needs of society will affect the success of transportation technology implementation over the next twenty years.

Wheeled mobility device transportation safety in fixed route and demand-responsive public transit vehicles within the United States.

PubMed

Frost, Karen L; van Roosmalen, Linda; Bertocci, Gina; Cross, Douglas J

2012-01-01

An overview of the current status of wheelchair transportation safety in fixed route and demand-responsive, non-rail, public transportation vehicles within the US is presented. A description of each mode of transportation is provided, followed by a discussion of the primary issues affecting safety, accessibility, and usability. Technologies such as lifts, ramps, securement systems, and occupant restraint systems, along with regulations and voluntary industry standards have been implemented with the intent of improving safety and accessibility for individuals who travel while seated in their wheeled mobility device (e.g., wheelchair or scooter). However, across both fixed route and demand-responsive transit systems a myriad of factors such as nonuse and misuse of safety systems, oversized wheeled mobility devices, vehicle space constraints, and inadequate vehicle operator training may place wheeled mobility device (WhMD) users at risk of injury even under non-impact driving conditions. Since WhMD-related incidents also often occur during the boarding and alighting process, the frequency of these events, along with factors associated with these events are described for each transit mode. Recommendations for improving WhMD transportation are discussed given the current state of

Thermal Conductivity of Twisted Bilayer Graphene Nanoribbons from Non-equilibrium Molecular Dynamics Study.

NASA Astrophysics Data System (ADS)

Li, Chenyang; Su, Shanshan; Ge, Supeng; Lake, Roger

Misorientation of the two layers of bilayer graphene affects both the electronic properties and the vibrational modes or phonons. The phonon density of modes is little affected by misorientation, however, zone-folding can allow new Umklapp scattering processes that could affect the phonon transport and thermal conductivity. To investigate this, we use NEMD molecular dynamics simulations as implemented in LAMMPS to study the thermal conductivity of the misoriented graphene bilayers. Seven commensurate misorientation angles varying from 6.01º to 48.36º have modeled and analyzed to understand how the misorientation angle affects the thermal conductivity of relatively wide ( 10 nm) misoriented bilayer graphene nanoribbons (m-BLGNRs). Within numerical accuracy, we find that the thermal conductivity of the m-BLGNRs for all of the simulated commensurate angles have the same thermal conductivity with AB stacked and AA stacked BLGNRs. These results indicate that neither the misorientation angle nor the stacking order affect the thermal conductivity of BLGNRs. This work was supported as part by the NSF #1307671.

Temperature of surface waters in the conterminous United States

USGS Publications Warehouse

Blakey, James F.

1966-01-01

Temperature is probably the most important, but least discussed, parameter in determining water quality. The purpose of this report is to present the average or most probable temperatures of surface waters in the conterminous United States and to cite factors that affect and are affected by water temperature. Temperature is related, usually directly, to all the chemical, physical, and biological properties of water. The ability of water to dissolve or precipitate materials is temperature dependent, the ability of water to transport or deposit suspended material is temperature dependent, and the aquatic life of a lake or stream may thrive or die because of the water temperature.Everyone is concerned, though often unknowingly, about water temperature. The amount and type of treatment necessary for a municipal supply are temperature dependent; therefore it affects the consumer cost. Temperature determines the volume of cooling water needed for industrial processes and steampower generation. Conservation and recreation practices are affected by water temperature, and the farmers' irrigation practices and livestock production may be affected by the water temperature.

An air pollution episode and its formation mechanism during the tropical cyclone Nuri's landfall in a coastal city of south China

NASA Astrophysics Data System (ADS)

Yang, John Xun; Lau, Alexis Kai Hon; Fung, Jimmy Chi Hung; Zhou, Wen; Wenig, Mark

2012-07-01

In this work we investigated an air pollution episode during the landfall process of a tropical cyclone (TC) in Hong Kong. TCs affect air condition and account for most air pollution episodes in summer of this region. In August 2008, TC Nuri made direct landfall in Hong Kong. Before its landfall, an air pollution episode occurred, where major pollutants like SO2 and PM10 increased eight and six times higher respectively. Rather than using single measurement method, we combined ground air sampling, lidar, sunphotometer and satellite lidar CALIPSO with focus on aerosol to study the episode mechanism, and some new phenomena were found. During the episode, it was found that heavy inland aerosol plumes existed in areas larger than urbanized regions and were elevated vertically and transported southward. During episode, planetary boundary layer (PBL) expansion and height increase were observed, which is different from previous reported PBL compression and height decrease. While vertical subsidence and horizontal stagnation and consequently local aerosol accumulation were attributed as the main episode cause in previous cases, our observation showed that transported aerosols dominated in this TC landfall event. This can be further confirmed by examining aerosol chemical composition, size distribution and single scattering albedo, where transported related species showed significantly change and local indicators remained relatively stable. Invigorated cloud droplets were found on the boundary layer top upon aerosol elevation. The results indicate that site difference and TC tracks should be considered for analyzing episode formation mechanism. They can cause difference in the strength of vertical subsidence and horizontal advection and affect pollution flow direction, which subsequently results in different pollution formation processes.

The atmospheric heat engine response to climate change

NASA Astrophysics Data System (ADS)

Pauluis, O. M.

2014-12-01

Moist convection is characterized by complex interactions between dynamics and thermodynamics. As air parcels within the atmosphere, they experience multiple thermodynamic transformations, such as compression and expansion, diabatic heating and cooling, condensation and mixing. These transformations correspond to those of a heat engine that produces kinetic energy while transporting energy from a warm source to a colder sink. This atmospheric heat engine is however directly affected by moist processes. First, falling precipitation acts as a break on the circulation by dissipating a significant amount of kinetic energy. Second, evaporation of unsaturated water and diffusion of water vapor are irrevesible processes that also reduce the amount of work that can be produced. An important challenge is to quantify the impacts that these two effects have on the generation of kinetic energy. Here, I will introduce a new technique - the Mean Air Flow As Lagragian Dynamics Approximation (MAFALDA) - that can be used to systematically analyze the thermodynamic behavior of complex atmospheric flows. This approach relies on sorting the upward mass transport in terms of the equivalent potential temperature of the air parcels to obtain an isentropic streamfunction. This streamfunction is then used to determine the thermodynamic evolution of air parcels as they move through the atmosphere. This approach is applied to analyze how convective systems would behave in a warmer climate. It is shown that an increase in atmospheric temperature lead to a significant increase of the amount of kinetic energy that is produced per unit of mass of air transported. At the same time, the total generation of kinetic energy is only slightly affected. Taken together, these findings imply that, in a warming atmosphere, the number of intense convective events will be reduced, while their intensity should increase. I will also discuss the new possibility of systematically studying the thermodynamic transformation in atmospheric models.

Saltation of Non-Spherical Sand Particles

PubMed Central

Wang, Zhengshi; Ren, Shan; Huang, Ning

2014-01-01

Saltation is an important geological process and the primary source of atmospheric mineral dust aerosols. Unfortunately, no studies to date have been able to precisely reproduce the saltation process because of the simplified theoretical models used. For example, sand particles in most of the existing wind sand movement models are considered to be spherical, the effects of the sand shape on the structure of the wind sand flow are rarely studied, and the effect of mid-air collision is usually neglected. In fact, sand grains are rarely round in natural environments. In this paper, we first analyzed the drag coefficients, drag forces, and starting friction wind speeds of sand grains with different shapes in the saltation process, then established a sand saltation model that considers the coupling effect between wind and the sand grains, the effect of the mid-air collision of sand grains, and the effect of the sand grain shape. Based on this model, the saltation process and sand transport rate of non-spherical sand particles were simulated. The results show that the sand shape has a significant impact on the saltation process; for the same wind speed, the sand transport rates varied for different shapes of sand grains by as much as several-fold. Therefore, sand shape is one of the important factors affecting wind-sand movement. PMID:25170614

Thermal transport in bismuth telluride quintuple layer: mode-resolved phonon properties and substrate effects

PubMed Central

Shao, Cheng; Bao, Hua

2016-01-01

The successful exfoliation of atomically-thin bismuth telluride (Bi2Te3) quintuple layer (QL) attracts tremendous research interest in this strongly anharmonic quasi-two-dimensional material. The thermal transport properties of this material are not well understood, especially the mode-wise properties and when it is coupled with a substrate. In this work, we have performed molecular dynamics simulations and normal mode analysis to study the mode-resolved thermal transport in freestanding and supported Bi2Te3 QL. The detailed mode-wise phonon properties are calculated and the accumulated thermal conductivities with respect to phonon mean free path (MFP) are constructed. It is shown that 60% of the thermal transport is contributed by phonons with MFP longer than 20 nm. Coupling with a-SiO2 substrate leads to about 60% reduction of thermal conductivity. Through varying the interfacial coupling strength and the atomic mass of substrate, we also find that phonon in Bi2Te3 QL is more strongly scattered by interfacial potential and its transport process is less affected by the dynamics of substrate. Our study provides an in-depth understanding of heat transport in Bi2Te3 QL and is helpful in further tailoring its thermal property through nanostructuring. PMID:27263656

Transport of root-respired CO₂ via the transpiration stream affects aboveground carbon assimilation and CO₂ efflux in trees.

PubMed

Bloemen, Jasper; McGuire, Mary Anne; Aubrey, Doug P; Teskey, Robert O; Steppe, Kathy

2013-01-01

Upward transport of CO₂ via the transpiration stream from belowground to aboveground tissues occurs in tree stems. Despite potentially important implications for our understanding of plant physiology, the fate of internally transported CO₂ derived from autotrophic respiratory processes remains unclear. We infused a ¹³CO₂-labeled aqueous solution into the base of 7-yr-old field-grown eastern cottonwood (Populus deltoides) trees to investigate the effect of xylem-transported CO₂ derived from the root system on aboveground carbon assimilation and CO₂ efflux. The ¹³C label was transported internally and detected throughout the tree. Up to 17% of the infused label was assimilated, while the remainder diffused to the atmosphere via stem and branch efflux. The largest amount of assimilated ¹³C was found in branch woody tissues, while only a small quantity was assimilated in the foliage. Petioles were more highly enriched in ¹³C than other leaf tissues. Our results confirm a recycling pathway for respired CO₂ and indicate that internal transport of CO₂ from the root system may confound the interpretation of efflux-based estimates of woody tissue respiration and patterns of carbohydrate allocation. © 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.

The intrinsic disorder related alloy scattering in ZrNiSn half-Heusler thermoelectric materials

PubMed Central

Xie, Hanhui; Wang, Heng; Fu, Chenguang; Liu, Yintu; Snyder, G. Jeffrey; Zhao, Xinbing; Zhu, Tiejun

2014-01-01

The intrinsic structural disorder dramatically affects the thermal and electronic transport in semiconductors. Although normally considered an ordered compound, the half-Heusler ZrNiSn displays many transport characteristics of a disordered alloy. Similar to the (Zr,Hf)NiSn based solid solutions, the unsubstituted ZrNiSn compound also exhibits charge transport dominated by alloy scattering, as demonstrated in this work. The unexpected charge transport, even in ZrNiSn which is normally considered fully ordered, can be explained by the Ni partially filling interstitial sites in this half-Heusler system. The influence of the disordering and defects in crystal structure on the electron transport process has also been quantitatively analyzed in ZrNiSn1-xSbx with carrier concentration nH ranging from 5.0×1019 to 2.3×1021 cm−3 by changing Sb dopant content. The optimized carrier concentration nH ≈ 3–4×1020 cm−2 results in ZT ≈ 0.8 at 875K. This work suggests that MNiSn (M = Hf, Zr, Ti) and perhaps most other half-Heusler thermoelectric materials should be considered highly disordered especially when trying to understand the electronic and phonon structure and transport features. PMID:25363573

Physiological desensitization of carbohydrate permeases and adenylate cyclase to regulation by the phosphoenolpyruvate:sugar phosphotransferase system in Escherichia coli and Salmonella typhimurium. Involvement of adenosine cyclic 3',5'-phosphate and inducer.

PubMed

Saier, M H; Keeler, D K; Feucht, B U

1982-03-10

Adenylate cyclase and a number of carbohydrate transport systems are subject to regulation by the phosphoenolpyruvate:sugar phosphotransferase system. These sensitive carbohydrate transport systems are desensitized to regulation by the phosphotransferase system, and adenylate cyclase is deactivated when cells are grown in medium containing cyclic AMP. These effects are specific for cyclic AMP and are potentiated by the genetic loss of cyclic AMP phosphodiesterase. Inclusion in the growth medium of an inducer of a sensitive transport system also promotes desensitization of that particular transport system. Inducer-promoted desensitization is specific for the particular target transport system, while cyclic AMP-promoted desensitization is general and affects several systems. Desensitization of the permeases to regulation, and inactivation of adenylate cyclase, are slow processes which are blocked by chloramphenicol and are therefore presumably dependent on protein synthesis. Several sugar substrates of the phosphotransferase system are capable of regulating the sensitive carbohydrate transport systems. The evidence suggests that desensitization to this regulation does not result from a direct effect on the functioning of Enzyme I, a small heat-stable protein of the phosphotransferase system, HPr, or an Enzyme II of the phosphotransferase system, but specifically uncouples the permease systems from regulation.

23 CFR 450.214 - Development and content of the long-range statewide transportation plan.

Code of Federal Regulations, 2010 CFR

2010-04-01

... applicable, elements and connections between public transportation, non-motorized modes, rail, commercial..., affected public agencies, representatives of public transportation employees, freight shippers, private providers of transportation, representatives of users of public transportation, representatives of users of...

49 CFR 173.61 - Mixed packaging requirements.

Code of Federal Regulations, 2011 CFR

2011-10-01

....61 Transportation Other Regulations Relating to Transportation PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION HAZARDOUS MATERIALS REGULATIONS SHIPPERS-GENERAL... material that could, under normal conditions of transportation, adversely affect the explosive or its...

49 CFR 173.61 - Mixed packaging requirements.

Code of Federal Regulations, 2014 CFR

2014-10-01

....61 Transportation Other Regulations Relating to Transportation PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION HAZARDOUS MATERIALS REGULATIONS SHIPPERS-GENERAL... material that could, under normal conditions of transportation, adversely affect the explosive or its...

49 CFR 173.61 - Mixed packaging requirements.

Code of Federal Regulations, 2013 CFR

2013-10-01

....61 Transportation Other Regulations Relating to Transportation PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION HAZARDOUS MATERIALS REGULATIONS SHIPPERS-GENERAL... material that could, under normal conditions of transportation, adversely affect the explosive or its...

49 CFR 173.61 - Mixed packaging requirements.

Code of Federal Regulations, 2012 CFR

2012-10-01

....61 Transportation Other Regulations Relating to Transportation PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION HAZARDOUS MATERIALS REGULATIONS SHIPPERS-GENERAL... material that could, under normal conditions of transportation, adversely affect the explosive or its...

49 CFR 173.61 - Mixed packaging requirements.

Code of Federal Regulations, 2010 CFR

2010-10-01

....61 Transportation Other Regulations Relating to Transportation PIPELINE AND HAZARDOUS MATERIALS SAFETY ADMINISTRATION, DEPARTMENT OF TRANSPORTATION HAZARDOUS MATERIALS REGULATIONS SHIPPERS-GENERAL... material that could, under normal conditions of transportation, adversely affect the explosive or its...

Transportation energy data book

DOT National Transportation Integrated Search

1999-09-01

This report presents statistics that characterize transportation activities and data on other factors that affect transportation energy use. The 12 chapters of the 19th edition of the Data Book focus on various aspects of the transportation industry:...

29 CFR 788.11 - “Transporting [such] products to the mill, processing plant, railroad, or other transportation...

Code of Federal Regulations, 2010 CFR

2010-07-01

... 29 Labor 3 2010-07-01 2010-07-01 false âTransporting [such] products to the mill, processing plant... EMPLOYED § 788.11 “Transporting [such] products to the mill, processing plant, railroad, or other transportation terminal.” The transportation or movement of logs or other forestry products to a “mill processing...

Highlights from the SoilCAM project: Soil Contamination, Advanced integrated characterisation and time-lapse Monitoring

NASA Astrophysics Data System (ADS)

French, H. K.; van der Zee, S. E. A. T. M.; Wehrer, M.; Godio, A.; Pedersen, L. B.; Toscano, G.

2012-04-01

The SoilCAM project (Soil Contamination, Advanced integrated characterisation and time-lapse Monitoring 2008-2012, EU-FP7-212663) is aimed at improving current methods for monitoring contaminant distribution and biodegradation in the subsurface. At two test sites, Oslo airport Gardermoen in Norway and the Trecate site in Italy, a number of geophysical techniques, lysimeter and other soil and water sampling techniques as well as numerical flow and transport modelling have been combined at different scales in order to characterise flow transport processes in the unsaturated and saturated zones. Laboratory experiments have provided data on physical and bio-geo-chemical parameters for use in models and to select remediation methods. The geophysical techniques were used to map geological heterogeneities and also conduct time-lapse measurements of processes in the unsaturated zone. Both cross borehole and surface electrodes were used for electrical resistivity and induced polarisation surveys. The geophysical surveys showed clear indications of areas highly affected by de-icing chemicals along the runway at Oslo airport. The time lapse measurements along the runway at the airport show infiltration patterns during snowmelt and are used to validate 2D unsaturated flow and transport simulations using SUTRA. The Orchestra model is used to describe the complex interaction between bio-geo-chemical processes in a 1D profile along the runway. The presence of installations such as a membrane along the runway highly affects the flow pattern and challenges the capacity of the numerical code. Smaller scale field site measurements have revealed the increase of iron and manganese during degradation of de-icing chemicals. The use of Nitrate to increase red-ox potential was tested, but results have not been analysed yet. So far it cannot be concluded that degradation process can be quantified indirectly by geophysical monitoring. At the Trecate site a combination of georadar, electrical resistivity and radio magneto telluric provided a broad outline of the geology down to 50 m, there is a good consistency in the data in the overlapping part, and more deep samples would be required to validate the geological interpretation of the data. Anomalies in the Induced polarisation and electrical resistivity data from the cross borehole measurements indicate where the remaining crude oil can be found. Water samples from multilevel samplers reveal crude oil present in emulsion in the zone of groundwater fluctuations, highlighting the importance of colloidal transport. Geochemistry of the groundwater clearly indicates degradation of hydrocarbons under iron- and sulphate reducing conditions. Modflow has been used to simulate the regional groundwater flow and transport in the area. An overview of the work that has been conducted and main highlights of the results so far will be presented.

Calcium regulation in crustaceans during the molt cycle: a review and update.

PubMed

Ahearn, Gregory A; Mandal, Prabir K; Mandal, Anita

2004-02-01

Epithelial cells of the gut, gills, antennal glands and integument regulate calcium concentrations in crustaceans during the molt cycle. A cellular calcium transport model has been proposed suggesting the presence of calcium pumps, cation antiporters and calcium channels in transporting epithelial membranes that regulate the movements of this cation across the cell layer. Basolateral calcium transport during postmolt appears mainly regulated by the low affinity NCX antiporter, while calcium regulating 'housekeeping' activities of these cells in intermolt are controlled by the high affinity calcium ATPase (PMCA). A model is proposed for the involvement of the epithelial ER in the massive transepithelial calcium fluxes that occur during premolt and postmolt. This model involves the endoplasmic reticulum SERCA and RyR proteins and proposed cytoplasmic unstirred layers adjacent to apical and basolateral plasma membranes where calcium activities may largely exceed those in the bulk cytoplasmic phase. A result of the proposed transepithelial calcium transport model is that large quantities of calcium can be moved through these cells by these processes without affecting the low, and carefully controlled, bulk cytoplasmic calcium activities.

A FYVE zinc finger domain protein specifically links mRNA transport to endosome trafficking

PubMed Central

Pohlmann, Thomas; Baumann, Sebastian; Haag, Carl; Albrecht, Mario; Feldbrügge, Michael

2015-01-01

An emerging theme in cellular logistics is the close connection between mRNA and membrane trafficking. A prominent example is the microtubule-dependent transport of mRNAs and associated ribosomes on endosomes. This coordinated process is crucial for correct septin filamentation and efficient growth of polarised cells, such as fungal hyphae. Despite detailed knowledge on the key RNA-binding protein and the molecular motors involved, it is unclear how mRNAs are connected to membranes during transport. Here, we identify a novel factor containing a FYVE zinc finger domain for interaction with endosomal lipids and a new PAM2-like domain required for interaction with the MLLE domain of the key RNA-binding protein. Consistently, loss of this FYVE domain protein leads to specific defects in mRNA, ribosome, and septin transport without affecting general functions of endosomes or their movement. Hence, this is the first endosomal component specific for mRNP trafficking uncovering a new mechanism to couple mRNPs to endosomes. DOI: http://dx.doi.org/10.7554/eLife.06041.001 PMID:25985087

Remote sensing and ichthyoplankton ecology of coastal upwelling fronts off central California

NASA Astrophysics Data System (ADS)

Bjorkstedt, Eric Peter

1998-11-01

Recruitment to many marine populations is determined by processes affecting survival and transport of planktonic larvae. Coastal upwelling poses a trade-off between larval access to high productivity supported by upwelled nutrients and increased risk of offshore transport and failure to return to coastal habitats. I used plankton surveys, remote sensing, and a simple model to investigate the role of coastal upwelling fronts and behavior in pelagic ecology and recruitment success, focussing on rockfish (Sebastes spp.) off central California. Distributions of early stage larvae suggest that coastal upwelling fronts reduce offshore transport of rockfish larvae, in contrast to distributions of taxa with life histories that minimize larval exposure to strong upwelling. Coincident distributions of larval fish, prey (i.e., small copepods and invertebrate eggs) and phytoplankton patches indicate that coastal upwelling fronts provide enhanced foraging conditions for larvae. Thus, coastal upwelling fronts may allow coastal taxa to successfully exploit high productivity during the upwelling season while reducing the risk of offshore transport. I developed a novel method for utilizing a single HF radar to resolve currents and detect fronts that matched sea surface temperature fronts generated by coastal upwelling. Fronts and currents detected with NF radar affect distributions and transport of planktonic larval fish and intertidal barnacle larvae, demonstrating that remote sensing with HF radar can support field and modelling research on ecological dynamics in coastal marine systems. I used an empirically-based model that incorporated the advection-foraging trade-off and long-distance swimming as an active settlement behavior to investigate optimal settlement strategies as a function of pelagic transport and growth. For parameters loosely describing pelagic stages of rockfish, the model predicts optimal settling strategies (ages and sizes) for pelagic juveniles that roughly match observed values for settling rockfish and suggests optimal spawning locations for adults. The model suggests that offshore transport is more important than growth in determining recruitment success. Thus, coastal upwelling fronts may favor recruitment more by reducing offshore transport than by providing rich food resources. Results of this model represent an initial step towards determining the role of active settlement behaviors in population dynamics and life history evolution.

Amino acid carryover in the subzonal space of mouse fertilized ova affects subsequent transport kinetics.

PubMed

Rudraraju, Nirmala; Baltz, Jay M

2009-11-01

SummaryWe have investigated whether culture in glycine-containing medium affects subsequent glycine transport by the specific transport system, GLYT1, which is the sole glycine transporter in fertilized mouse ova. When fertilized ova were maintained for 6 h in culture with a physiological level of glycine (1 mM), subsequent transport of radiolabelled glycine was decreased by 40% compared with fertilized ova that had been maintained in glycine-free medium. Kinetic measurements showed that the apparent glycine affinity was decreased after culture with glycine (Km increased from 0.20 to 0.41 mM), but maximal transport rate was unchanged (similar Vmax of 20 and 23 fmol/fertilized ovum/min). These findings could have reflected activation of GLYT1 by prolonged substrate starvation, similar to some other amino acid transport systems. However, our findings were instead consistent with the alteration in glycine transport being due to trapping of glycine within the zona pellucida resulting in competitive transport inhibition even after ova were removed from glycine-containing media. First, even very brief exposures to glycine resulted in decreased subsequent glycine transport rates, with a maximal effect apparent within ~6 min. Second, extensive washing (at least six) reversed the effect. Third, the effect was absent when zona-free fertilized ova were used. Thus, it appears that components of the external environment of preimplantation embryos may continue to affect transport kinetics for a period even after embryos are removed from environments that contain them.

Nitric oxide and plant iron homeostasis.

PubMed

Buet, Agustina; Simontacchi, Marcela

2015-03-01

Like all living organisms, plants demand iron (Fe) for important biochemical and metabolic processes. Internal imbalances, as a consequence of insufficient or excess Fe in the environment, lead to growth restriction and affect crop yield. Knowledge of signals and factors affecting each step in Fe uptake from the soil and distribution (long-distance transport, remobilization from old to young leaves, and storage in seeds) is necessary to improve our understanding of plant mineral nutrition. In this context, the role of nitric oxide (NO) is discussed as a key player in maintaining Fe homeostasis through its cross talk with hormones, ferritin, and frataxin and the ability to form nitrosyl-iron complexes. © 2015 New York Academy of Sciences.

RNA quality in fresh-frozen gastrointestinal tumor specimens-experiences from the tumor and healthy tissue bank TU Dresden.

PubMed

Zeugner, Silke; Mayr, Thomas; Zietz, Christian; Aust, Daniela E; Baretton, Gustavo B

2015-01-01

The term "pre-analytics" summarizes all procedures concerned with specimen collection or processing as well as logistical aspects like transport or storage of tissue specimens. All or these variables as well as tissue-specific characteristics affect sample quality. While certain parameters like warm ischemia or tissue-specific characteristics cannot be changed, other parameters can be assessed and optimized. The aim of this study was to determine RNA quality by assessing the RIN values of specimens from different organs and to assess the influence of vacuum preservation. Samples from the GI tract, in general, appear to have lower RNA quality when compared to samples from other organ sites. This may be due to the digestive enzymes or bacterial colonization. Processing time in pathology does not significantly influence RNA quality. Tissue preservation with a vacuum sealer leads to preserved RNA quality over an extended period of time and offers a feasible alternative to minimize the influence of transport time into pathology.

Steering the Properties of MoOx Hole Transporting Layers in OPVs and OLEDs: Interface Morphology vs. Electronic Structure

PubMed Central

Marchal, Wouter; Verboven, Inge; Kesters, Jurgen; Moeremans, Boaz; De Dobbelaere, Christopher; Bonneux, Gilles; Elen, Ken; Conings, Bert; Maes, Wouter; Boyen, Hans Gerd; Deferme, Wim; Van Bael, Marlies; Hardy, An

2017-01-01

The identification, fine-tuning, and process optimization of appropriate hole transporting layers (HTLs) for organic solar cells is indispensable for the production of efficient and sustainable functional devices. In this study, the optimization of a solution-processed molybdenum oxide (MoOx) layer fabricated from a combustion precursor is carried out via the introduction of zirconium and tin additives. The evaluation of the output characteristics of both organic photovoltaic (OPV) and organic light emitting diode (OLED) devices demonstrates the beneficial influence upon the addition of the Zr and Sn ions compared to the generic MoOx precursor. A dopant effect in which the heteroatoms and the molybdenum oxide form a chemical identity with fundamentally different structural properties could not be observed, as the additives do not affect the molybdenum oxide composition or electronic band structure. An improved surface roughness due to a reduced crystallinity was found to be a key parameter leading to the superior performance of the devices employing modified HTLs. PMID:28772483

Steering the Properties of MoOx Hole Transporting Layers in OPVs and OLEDs: Interface Morphology vs. Electronic Structure.

PubMed

Marchal, Wouter; Verboven, Inge; Kesters, Jurgen; Moeremans, Boaz; De Dobbelaere, Christopher; Bonneux, Gilles; Elen, Ken; Conings, Bert; Maes, Wouter; Boyen, Hans Gerd; Deferme, Wim; Van Bael, Marlies; Hardy, An

2017-01-30

The identification, fine-tuning, and process optimization of appropriate hole transporting layers (HTLs) for organic solar cells is indispensable for the production of efficient and sustainable functional devices. In this study, the optimization of a solution-processed molybdenum oxide (MoOx) layer fabricated from a combustion precursor is carried out via the introduction of zirconium and tin additives. The evaluation of the output characteristics of both organic photovoltaic (OPV) and organic light emitting diode (OLED) devices demonstrates the beneficial influence upon the addition of the Zr and Sn ions compared to the generic MoOx precursor. A dopant effect in which the heteroatoms and the molybdenum oxide form a chemical identity with fundamentally different structural properties could not be observed, as the additives do not affect the molybdenum oxide composition or electronic band structure. An improved surface roughness due to a reduced crystallinity was found to be a key parameter leading to the superior performance of the devices employing modified HTLs.

Geomorphic and biophysical factors affecting water tracks in northern Alaska

NASA Astrophysics Data System (ADS)

Trochim, E. D.; Jorgenson, M. T.; Prakash, A.; Kane, D. L.

2016-03-01

A better understanding of water movement on hillslopes in Arctic environments is necessary for evaluating the effects of climate variability. Drainage networks include a range of features that vary in transport capacity from rills to water tracks to rivers. This research focuses on describing and classifying water tracks, which are saturated linear-curvilinear stripes that act as first-order pathways for transporting water off of hillslopes into valley bottoms and streams. Multiple factor analysis was used to develop five water tracks classes based on their geomorphic, soil, and vegetation characteristics. The water track classes were then validated using conditional inference trees, to verify that the classes were repeatable. Analysis of the classes and their characteristics indicate that water tracks cover a broad spectrum of patterns and processes primarily driven by surficial geology. This research demonstrates an improved approach to quantifying water track characteristics for specific areas, which is a major step toward understanding hydrological processes and feedbacks within a region.

Na3Si2Y0.16Zr1.84PO12-ionic liquid hybrid electrolytes: An approach for realizing solid-state sodium-ion batteries?

NASA Astrophysics Data System (ADS)

de la Torre-Gamarra, Carmen; Appetecchi, Giovanni Battista; Ulissi, Ulderico; Varzi, Alberto; Varez, Alejandro; Passerini, Stefano

2018-04-01

Ceramic electrolytes are prepared through sintering processes which are carried out at high temperatures and require prolonged operating times, resulting unwelcome in industrial applications. We report a physicochemical characterization on hybrid, sodium conducting, electrolyte systems obtained by coating NASICON ceramic powders with the N-butyl-N-methylpyrrolidinium bis(trifluoromethanesulfonyl)imide ionic liquid. The goal is to realize a ceramic-IL interface with improved sodium mobility, aiming to obtain a solid electrolyte with high ion transport properties but avoiding sintering thermal treatment. The purpose of the present work, however, is showing how simply combining NASICON powder and Py14TFSI does not lead to any synergic effect on the resulting hybrid electrolyte, evidencing that an average functionalization of the ceramic powder surface and/or ionic liquid is needed. Also, the processing conditions for preparing the hybrid samples are found to affect their ion transport properties.

Bottom currents and sediment transport in Long Island Sound: A modeling study

USGS Publications Warehouse

Signell, R.P.; List, J.H.; Farris, A.S.

2000-01-01

A high resolution (300-400 m grid spacing), process oriented modeling study was undertaken to elucidate the physical processes affecting the characteristics and distribution of sea-floor sedimentary environments in Long Island Sound. Simulations using idealized forcing and high-resolution bathymetry were performed using a three-dimensional circulation model ECOM (Blumberg and Mellor, 1987) and a stationary shallow water wave model HISWA (Holthuijsen et al., 1989). The relative contributions of tide-, density-, wind- and wave-driven bottom currents are assessed and related to observed characteristics of the sea-floor environments, and simple bedload sediment transport simulations are performed. The fine grid spacing allows features with scales of several kilometers to be resolved. The simulations clearly show physical processes that affect the observed sea-floor characteristics at both regional and local scales. Simulations of near-bottom tidal currents reveal a strong gradient in the funnel-shaped eastern part of the Sound, which parallels an observed gradient in sedimentary environments from erosion or nondeposition, through bedload transport and sediment sorting, to fine-grained deposition. A simulation of estuarine flow driven by the along-axis gradient in salinity shows generally westward bottom currents of 2-4 cm/s that are locally enhanced to 6-8 cm/s along the axial depression of the Sound. Bottom wind-driven currents flow downwind along the shallow margins of the basin, but flow against the wind in the deeper regions. These bottom flows (in opposition to the wind) are strongest in the axial depression and add to the estuarine flow when winds are from the west. The combination of enhanced bottom currents due to both estuarine circulation and the prevailing westerly winds provide an explanation for the relatively coarse sediments found along parts of the axial depression. Climatological simulations of wave-driven bottom currents show that frequent high-energy events occur along the shallow margins of the Sound, explaining the occurrence of relatively coarse sediments in these regions. Bedload sediment transport calculations show that the estuarine circulation coupled with the oscillatory tidal currents result in a net westward transport of sand in much of the eastern Sound. Local departures from this regional westward trend occur around topographic and shoreline irregularities, and there is strong predicted convergence of bedload transport over most of the large, linear sand ridges in the eastern Sound, providing a mechanism which prevents their decay. The strong correlation between the near-bottom current intensity based on the model results and the sediment response, as indicated by the distribution of sedimentary environments, provides a framework for predicting the long-term effects of anthropogenic activities.

Using thermodynamics to assess biotic and abiotic impediments to root water uptake

NASA Astrophysics Data System (ADS)

Bechmann, Marcel; Hildebrandt, Anke; Kleidon, Axel

2016-04-01

Root water uptake has been the subject of extensive research, dealing with understanding the processes limiting transpiration and understanding strategies of plants to avoid water stress. Many of those studies use models of water flow from the soil through the plant into the atmosphere to learn about biotic and abiotic factors affecting plant water relations. One important question in this context is to identify those processes that are most limiting to water transport, and specifically whether these processes lie within the plant or the soil? Here, we propose to use a thermodynamic formulation of root water uptake to answer this question. The method allows us to separate the energy exported at the root collar into a sum of energy fluxes related to all processes along the flow path, notably including the effect of increasing water retention in drier soils. Evaluation of the several contributions allows us to identify and rank the processes by how much these impede water flow from the soil to the atmosphere. The application of this approach to a complex 3-dimensional root water uptake model reveals insights on the role of root versus soil resistances to limit water flow. We investigate the efficiency of root water uptake in an ensemble of root systems with varying root hydraulic properties. While root morphology is kept the same, root radial and axial resistances are artificially varied. Starting with entirely young systems (uptake roots, high radial, low axial conductance) we increasingly add older roots (transport roots, high axial, low radial conductance) to improve transport within root systems. This yields a range of root hydraulic architectures, where the extremes are limited either by radial uptake capacity or low capacity to transport water along the root system. We model root water uptake in this range of root systems with a 3-dimensional root water uptake model in two different soils, applying constant flux boundary conditions in a dry down experiment and evaluate energy fluxes afterwards. The results show that a minimum of energy is exported in mixed root systems, but a wide range of root systems act near the optimum. A great loss of efficiency only occurs in the extreme cases (only young or only old roots). In all systems near the optimum root water uptake is impeded equally by abiotic and biotic factors in moist conditions, whereas abiotic factors become the limiting factor in dry conditions. The abiotic factors depend on the soil type and are either due to the water retention function or water flow towards individual roots. Small changes in the distribution of root resistance shift the impediments from radial to axial flow path within the root, but without much affecting overall energy export. This suggests that abiotic factors are a dominant control for efficient root water uptake, while morphology only has a comparatively smaller effect, as long as the root system contains a minimum mixture of uptake and transport roots.

The impact of climate change on transportation in the gulf coast

USGS Publications Warehouse

Savonis, M.J.; Burkett, V.R.; Potter, J.R.; Kafalenos, R.; Hyman, R.; Leonard, K.

2009-01-01

Climate affects the design, construction, safety, operations, and maintenance of transportation infrastructure and systems. The prospect of a changing climate raises critical questions regarding how alterations in temperature, precipitation, storm events, and other aspects of the climate could affect the nation's transportation system. This regional assessment of climate change and its potential impacts on transportation systems addresses these questions for the central Gulf Coast between Houston and Mobile. Warming temperatures are likely to increase the costs of transportation construction, maintenance, and operations. More frequent extreme precipitation events will likely disrupt transportation networks with flooding and visibility problems. Relative sea level rise will make much of the existing infrastructure more prone to frequent or permanent inundation. Increased storm intensity may lead to increased service disruption and damage. Consideration of these factors in today's transportation decisions should lead to a more robust, resilient, and cost-effective transportation network in the coming decades. ?? 2009 ASCE.

Early nutritional programming affects liver transcriptome in diploid and triploid Atlantic salmon, Salmo salar.

PubMed

Vera, L M; Metochis, C; Taylor, J F; Clarkson, M; Skjærven, K H; Migaud, H; Tocher, D R

2017-11-17

To ensure sustainability of aquaculture, plant-based ingredients are being used in feeds to replace marine-derived products. However, plants contain secondary metabolites which can affect food intake and nutrient utilisation of fish. The application of nutritional stimuli during early development can induce long-term changes in animal physiology. Recently, we successfully used this approach to improve the utilisation of plant-based diets in diploid and triploid Atlantic salmon. In the present study we explored the molecular mechanisms occurring in the liver of salmon when challenged with a plant-based diet in order to determine the metabolic processes affected, and the effect of ploidy. Microarray analysis revealed that nutritional history had a major impact on the expression of genes. Key pathways of intermediary metabolism were up-regulated, including oxidative phosphorylation, pyruvate metabolism, TCA cycle, glycolysis and fatty acid metabolism. Other differentially expressed pathways affected by diet included protein processing in endoplasmic reticulum, RNA transport, endocytosis and purine metabolism. The interaction between diet and ploidy also had an effect on the hepatic transcriptome of salmon. The biological pathways with the highest number of genes affected by this interaction were related to gene transcription and translation, and cell processes such as proliferation, differentiation, communication and membrane trafficking. The present study revealed that nutritional programming induced changes in a large number of metabolic processes in Atlantic salmon, which may be associated with the improved fish performance and nutrient utilisation demonstrated previously. In addition, differences between diploid and triploid salmon were found, supporting recent data that indicate nutritional requirements of triploid salmon may differ from those of their diploid counterparts.

2008 Weather and Aeolian Sand-Transport Data from the Colorado River Corridor, Grand Canyon, Arizona

USGS Publications Warehouse

Draut, Amy E.; Sondossi, Hoda A.; Hazel, Joseph E.; Andrews, Timothy; Fairley, Helen C.; Brown, Christopher R.; Vanaman, Karen M.

2009-01-01

This report presents measurements of weather parameters and aeolian (windblown) sand transport made in 2008 near selected archaeological sites in the Colorado River corridor through Grand Canyon, Ariz. The quantitative methods and data discussed here form a basis for monitoring ecosystem processes that affect archeological-site stability. Combined with forthcoming work to evaluate landscape evolution at nearby archaeological sites, these data can be used to document the relationship between physical processes, including weather and aeolian sand transport, and their effects on the physical integrity of archaeological sites. Data collected in 2008 reveal event- and seasonal-scale variations in rainfall, wind, temperature, humidity, and barometric pressure. Broad seasonal changes in aeolian sediment flux are also apparent at most study sites. The continuation of monitoring that began in 2007, and installation of equipment at several new sites in early 2008, allowed evaluation of the effects of the March 2008 high-flow experiment (HFE) on aeolian sand transport. At two of the nine sites studied, spring and summer winds reworked 2008 HFE sandbars to form new aeolian dunes, at which sand moved inland toward larger, well-established dune fields. At the other seven study sites, neither dune formation nor enhanced sand transport after the HFE were observed. At several of those sites, dominant wind directions in spring 2008 were not oriented such that much HFE sand would have moved inland; at other sites, lack of increased inland sand flux is attributable to lack of sandbar enlargement near the study sites or to inhibition of sand movement by vegetation or local topography.

Chlamydomonas Kinesin-II–dependent Intraflagellar Transport (IFT): IFT Particles Contain Proteins Required for Ciliary Assembly in Caenorhabditis elegans Sensory Neurons

PubMed Central

Cole, Douglas G.; Diener, Dennis R.; Himelblau, Amy L.; Beech, Peter L.; Fuster, Jason C.; Rosenbaum, Joel L.

1998-01-01

We previously described a kinesin-dependent movement of particles in the flagella of Chlamydomonas reinhardtii called intraflagellar transport (IFT) (Kozminski, K.G., K.A. Johnson, P. Forscher, and J.L. Rosenbaum. 1993. Proc. Natl. Acad. Sci. USA. 90:5519–5523). When IFT is inhibited by inactivation of a kinesin, FLA10, in the temperature-sensitive mutant, fla10, existing flagella resorb and new flagella cannot be assembled. We report here that: (a) the IFT-associated FLA10 protein is a subunit of a heterotrimeric kinesin; (b) IFT particles are composed of 15 polypeptides comprising two large complexes; (c) the FLA10 kinesin-II and IFT particle polypeptides, in addition to being found in flagella, are highly concentrated around the flagellar basal bodies; and, (d) mutations affecting homologs of two of the IFT particle polypeptides in Caenorhabditis elegans result in defects in the sensory cilia located on the dendritic processes of sensory neurons. In the accompanying report by Pazour, G.J., C.G. Wilkerson, and G.B. Witman (1998. J. Cell Biol. 141:979–992), a Chlamydomonas mutant (fla14) is described in which only the retrograde transport of IFT particles is disrupted, resulting in assembly-defective flagella filled with an excess of IFT particles. This microtubule- dependent transport process, IFT, defined by mutants in both the anterograde (fla10) and retrograde (fla14) transport of isolable particles, is probably essential for the maintenance and assembly of all eukaryotic motile flagella and nonmotile sensory cilia. PMID:9585417

A New Scheme for Considering Soil Water-Heat Transport Coupling Based on Community Land Model: Model Description and Preliminary Validation

NASA Astrophysics Data System (ADS)

Wang, Chenghai; Yang, Kai

2018-04-01

Land surface models (LSMs) have developed significantly over the past few decades, with the result that most LSMs can generally reproduce the characteristics of the land surface. However, LSMs fail to reproduce some details of soil water and heat transport during seasonal transition periods because they neglect the effects of interactions between water movement and heat transfer in the soil. Such effects are critical for a complete understanding of water-heat transport within a soil thermohydraulic regime. In this study, a fully coupled water-heat transport scheme (FCS) is incorporated into the Community Land Model (version 4.5) to replaces its original isothermal scheme, which is more complete in theory. Observational data from five sites are used to validate the performance of the FCS. The simulation results at both single-point and global scale show that the FCS improved the simulation of soil moisture and temperature. FCS better reproduced the characteristics of drier and colder surface layers in arid regions by considering the diffusion of soil water vapor, which is a nonnegligible process in soil, especially for soil surface layers, while its effects in cold regions are generally inverse. It also accounted for the sensible heat fluxes caused by liquid water flow, which can contribute to heat transfer in both surface and deep layers. The FCS affects the estimation of surface sensible heat (SH) and latent heat (LH) and provides the details of soil heat and water transportation, which benefits to understand the inner physical process of soil water-heat migration.

Evaluation of NASA-sponsored research on capital investment decision making in the civil aviation industry

NASA Technical Reports Server (NTRS)

Donovan, D. J.

1977-01-01

Significant findings of three studies undertaken to provide the NASA Aircraft Energy Efficiency (ACEE) Office with information regarding how aircraft manufacturers and commercial airlines make investment decisions concerning the acquisition of new and derivative technology are analyzed and their general implications explored. Topics discussed include: the market for airline aircraft, factors affecting the corporate decision making process of air transport manufacturers, and flight equipment purchasing practices of representative air carriers.

Digital Hydrologic Networks Supporting Applications Related to Spatially Referenced Regression Modeling

USGS Publications Warehouse

Brakebill, J.W.; Wolock, D.M.; Terziotti, S.E.

2011-01-01

Digital hydrologic networks depicting surface-water pathways and their associated drainage catchments provide a key component to hydrologic analysis and modeling. Collectively, they form common spatial units that can be used to frame the descriptions of aquatic and watershed processes. In addition, they provide the ability to simulate and route the movement of water and associated constituents throughout the landscape. Digital hydrologic networks have evolved from derivatives of mapping products to detailed, interconnected, spatially referenced networks of water pathways, drainage areas, and stream and watershed characteristics. These properties are important because they enhance the ability to spatially evaluate factors that affect the sources and transport of water-quality constituents at various scales. SPAtially Referenced Regressions On Watershed attributes (SPARROW), a process-based/statistical model, relies on a digital hydrologic network in order to establish relations between quantities of monitored contaminant flux, contaminant sources, and the associated physical characteristics affecting contaminant transport. Digital hydrologic networks modified from the River Reach File (RF1) and National Hydrography Dataset (NHD) geospatial datasets provided frameworks for SPARROW in six regions of the conterminous United States. In addition, characteristics of the modified RF1 were used to update estimates of mean-annual streamflow. This produced more current flow estimates for use in SPARROW modeling. ?? 2011 American Water Resources Association. This article is a U.S. Government work and is in the public domain in the USA.

Nitrogen fluxes through unsaturated zones in five agricultural settings across the USA

NASA Astrophysics Data System (ADS)

Green, C. T.; Fisher, L. H.; Bekins, B. A.

2006-12-01

The main controls on nitrogen (N) fluxes between the root zone and the water table were determined for agricultural sites in California, Washington, Nebraska, Indiana, and Maryland in 2004 and 2005. Sites included irrigated and non-irrigated fields; soil textures ranging from clay to sand; crops including corn, soybeans, almonds, and pasture; and unsaturated zone thicknesses ranging from 0.5 to 20 m. Chemical analyses of water from lysimeters, shallow wells, and sediment cores indicate that advective transport of nitrate is the dominant process affecting the rate of N transport below the root zone. Vertical profiles of (1) N species, (2) stable N and O isotopes, and (3) oxygen gas in unsaturated zone air and shallow ground water, and correlations between N and other agricultural chemicals indicate that reactions do not greatly affect N concentrations between the root zone and the capillary fringe. Relatively stable concentrations at depths greater than a few meters allow calculation of nitrogen fluxes to the saturated zone. These fluxes are equivalent to 14 - 64% of the N application rates. At the same locations, median vertical fluxes of N in ground water are generally lower, ranging from 4 - 37% of N application rates. The lower nitrate fluxes in ground water reflect processes including lateral flow to tile drains and denitrification in the capillary fringe, as well as historical changes in N inputs.

Factors Affecting Nitrate Delivery to Streams from Shallow Ground Water in the North Carolina Coastal Plain

USGS Publications Warehouse

Harden, Stephen L.; Spruill, Timothy B.

2008-01-01

An analysis of data collected at five flow-path study sites between 1997 and 2006 was performed to identify the factors needed to formulate a comprehensive program, with a focus on nitrogen, for protecting ground water and surface water in the North Carolina Coastal Plain. Water-quality protection in the Coastal Plain requires the identification of factors that affect the transport of nutrients from recharge areas to streams through the shallow ground-water system. Some basins process or retain nitrogen more readily than others, and the factors that affect nitrogen processing and retention were the focus of this investigation to improve nutrient management in Coastal Plain streams and to reduce nutrient loads to coastal waters. Nitrate reduction in ground water was observed at all five flow-path study sites in the North Carolina Coastal Plain, although the extent of reduction at each site was influenced by various environmental, hydrogeologic, and geochemical factors. Denitrification was the most common factor responsible for decreases in nitrate along the ground-water flow paths. Specific factors, some of which affect denitrification rates, that appeared to influence ground-water nitrate concentrations along the flow paths or in the streams include soil drainage, presence or absence of riparian buffers, evapotranspiration, fertilizer use, ground-water recharge rates and residence times, aquifer properties, subsurface tile drainage, sources and amounts of organic matter, and hyporheic processes. The study data indicate that the nitrate-reducing capacity of the buffer zone combined with that of the hyporheic zone can substantially lower the amount of ground-water nitrate discharged to streams in agricultural settings of the North Carolina Coastal Plain. At the watershed scale, the effects of ground-water discharge on surface-water quality appear to be greatly influenced by streamflow conditions and the presence of extensive riparian vegetation. Streamflow statistics that reflect base flow and the general hydrologic dynamics of a stream are important in understanding nutrient transport from a watershed and may be useful indicators of watersheds that are likely to have higher yields of nutrients and water. Combining streamflow statistics with information on such factors as land use, soil drainage, extent of riparian vegetation, geochemical conditions, and subsurface tile drainage in the Coastal Plain can be useful in identifying watersheds that are most likely to export excessive nitrogen due to nonpoint-source loadings and watersheds that are effective in processing nitrogen.

A conceptual framework for dryland aeolian sediment transport along the grassland–forest continuum: Effects of woody plant canopy cover and disturbance

USGS Publications Warehouse

Breshears, D.D.; Whicker, J.J.; Zou, C.B.; Field, J.P.; Allen, Craig D.

2009-01-01

Aeolian processes are of particular importance in dryland ecosystems where ground cover is inherently sparse because of limited precipitation. Dryland ecosystems include grassland, shrubland, savanna, woodland, and forest, and can be viewed collectively as a continuum of woody plant cover spanning from grasslands with no woody plant cover up to forests with nearly complete woody plant cover. Along this continuum, the spacing and shape of woody plants determine the spatial density of roughness elements, which directly affects aeolian sediment transport. Despite the extensiveness of dryland ecosystems, studies of aeolian sediment transport have generally focused on agricultural fields, deserts, or highly disturbed sites where rates of transport are likely to be greatest. Until recently, few measurements have been made of aeolian sediment transport over multiple wind events and across a variety of types of dryland ecosystems. To evaluate potential trends in aeolian sediment transport as a function of woody plant cover, estimates of aeolian sediment transport from recently published studies, in concert with rates from four additional locations (two grassland and two woodland sites), are reported here. The synthesis of these reports leads to the development of a new conceptual framework for aeolian sediment transport in dryland ecosystems along the grassland–forest continuum.The findings suggest that: (1) for relatively undisturbed ecosystems, shrublands have inherently greater aeolian sediment transport because of wake interference flow associated with intermediate levels of density and spacing of woody plants; and (2) for disturbed ecosystems, the upper bound for aeolian sediment transport decreases as a function of increasing amounts of woody plant cover because of the effects of the height and density of the canopy on airflow patterns and ground cover associated with woody plant cover. Consequently, aeolian sediment transport following disturbance spans the largest range of rates in grasslands and associated systems with no woody plants (e.g., agricultural fields), an intermediate range in shrublands, and a relatively small range in woodlands and forests. These trends are consistent with previous observations relating large rates of wind erosion to intermediate values for spatial density of roughness elements. The framework for aeolian sediment transport, which is also relevant to dust fluxes, wind erosion, and related aeolian processes, is applicable to a diverse suite of environmental challenges, including land degradation and desertification, dust storms, contaminant transport, and alterations of the hydrological cycle.

A conceptual framework for dryland aeolian sediment transport along the grassland-forest continuum: Effects of woody plant canopy cover and disturbance

NASA Astrophysics Data System (ADS)

Breshears, David D.; Whicker, Jeffrey J.; Zou, Chris B.; Field, Jason P.; Allen, Craig D.

2009-04-01

Aeolian processes are of particular importance in dryland ecosystems where ground cover is inherently sparse because of limited precipitation. Dryland ecosystems include grassland, shrubland, savanna, woodland, and forest, and can be viewed collectively as a continuum of woody plant cover spanning from grasslands with no woody plant cover up to forests with nearly complete woody plant cover. Along this continuum, the spacing and shape of woody plants determine the spatial density of roughness elements, which directly affects aeolian sediment transport. Despite the extensiveness of dryland ecosystems, studies of aeolian sediment transport have generally focused on agricultural fields, deserts, or highly disturbed sites where rates of transport are likely to be greatest. Until recently, few measurements have been made of aeolian sediment transport over multiple wind events and across a variety of types of dryland ecosystems. To evaluate potential trends in aeolian sediment transport as a function of woody plant cover, estimates of aeolian sediment transport from recently published studies, in concert with rates from four additional locations (two grassland and two woodland sites), are reported here. The synthesis of these reports leads to the development of a new conceptual framework for aeolian sediment transport in dryland ecosystems along the grassland-forest continuum. The findings suggest that: (1) for relatively undisturbed ecosystems, shrublands have inherently greater aeolian sediment transport because of wake interference flow associated with intermediate levels of density and spacing of woody plants; and (2) for disturbed ecosystems, the upper bound for aeolian sediment transport decreases as a function of increasing amounts of woody plant cover because of the effects of the height and density of the canopy on airflow patterns and ground cover associated with woody plant cover. Consequently, aeolian sediment transport following disturbance spans the largest range of rates in grasslands and associated systems with no woody plants (e.g., agricultural fields), an intermediate range in shrublands, and a relatively small range in woodlands and forests. These trends are consistent with previous observations relating large rates of wind erosion to intermediate values for spatial density of roughness elements. The framework for aeolian sediment transport, which is also relevant to dust fluxes, wind erosion, and related aeolian processes, is applicable to a diverse suite of environmental challenges, including land degradation and desertification, dust storms, contaminant transport, and alterations of the hydrological cycle.

Different stages and status of vertical transporting process of Cu in Jiaozhou Bay

NASA Astrophysics Data System (ADS)

Yang, Dongfang; Li, Haixia; Wang, Qi; Zhang, Xiaolong; Ding, Jun

2017-12-01

Understanding the stages and status of vertical transporting process of pollutant in marine bay is essential to pollution control. This paper analyzed the stages and status of Cu’s vertical transporting process in waters in Jiaozhou Bay. Results showed that the vertical transporting process in waters in Jiaozhou Bay included four stages of 1) Cu was imported to the bay by major sources, 2) Cu was transported to surface waters, 3) Cu was transported from surface waters to sediment in sea bottom, and 4) Cu was fixed and buried in sediment. Furthermore, Cu’s vertical transporting process could be divided into seven status in detail, and he characteristics of the vertical transport process of Cu were also analyzed.

Peclet number as affected by molecular diffusion controls transient anomalous transport in alluvial aquifer-aquitard complexes

USGS Publications Warehouse

Zhang, Yong; Green, Christopher T.; Tick, Geoffrey R.

2015-01-01

This study evaluates the role of the Peclet number as affected by molecular diffusion in transient anomalous transport, which is one of the major knowledge gaps in anomalous transport, by combining Monte Carlo simulations and stochastic model analysis. Two alluvial settings containing either short- or long-connected hydrofacies are generated and used as media for flow and transport modeling. Numerical experiments show that 1) the Peclet number affects both the duration of the power-law segment of tracer breakthrough curves (BTCs) and the transition rate from anomalous to Fickian transport by determining the solute residence time for a given low-permeability layer, 2) mechanical dispersion has a limited contribution to the anomalous characteristics of late-time transport as compared to molecular diffusion due to an almost negligible velocity in floodplain deposits, and 3) the initial source dimensions only enhance the power-law tail of the BTCs at short travel distances. A tempered stable stochastic (TSS) model is then applied to analyze the modeled transport. Applications show that the time-nonlocal parameters in the TSS model relate to the Peclet number, Pe. In particular, the truncation parameter in the TSS model increases nonlinearly with a decrease in Pe due to the decrease of the mean residence time, and the capacity coefficient increases with an increase in molecular diffusion which is probably due to the increase in the number of immobile particles. The above numerical experiments and stochastic analysis therefore reveal that the Peclet number as affected by molecular diffusion controls transient anomalous transport in alluvial aquifer–aquitard complexes.

Child Dopamine Transporter Genotype and Parenting: Evidence for Evocative Gene-Environment Correlations

PubMed Central

Hayden, Elizabeth P.; Hanna, Brigitte; Sheikh, Haroon I.; Laptook, Rebecca S.; Kim, Jiyon; Singh, Shiva M.; Klein, Daniel N.

2017-01-01

The dopamine transporter (DAT1) gene is implicated in psychopathology risk. While the processes by which this gene exerts its effects on risk are poorly understood, a small body of research suggests that DAT1 influences early emerging negative emotionality (NE), a marker of children’s psychopathology risk. As child NE evokes negative parenting practices, the DAT1 may also play a role in gene-environment correlations. To test this model, children (N = 365) were genotyped for DAT1 and participated in standardized parent-child interaction tasks with their primary caregiver. The DAT1 9-repeat variant was associated with child negative affect expressed toward the parent during parent-child interactions, and parents of children with a 9-repeat allele exhibited more hostility and lower guidance/engagement than parents of children without a 9-repeat allele. These gene-environment associations were partially mediated by child negative affect toward the parent. Findings implicate a specific polymorphism in eliciting negative parenting, suggesting that evocative associations play a role in elevating children’s risk for emotional trajectories toward psychopathology risk. PMID:23398760

Testing the Porcelli Sawtooth Trigger Module

NASA Astrophysics Data System (ADS)

Bateman, G.; Nave, M. F. F.; Parail, V.

2005-10-01

The Porcelli sawtooth trigger model [1] is implemented as a module for the National Transport Code Collaboration Module Library [2] and is tested using BALDUR and JETTO integrated modeling simulations of JET and other tokamak discharges. Statistical techniques are used to compute the average sawtooth period and the random scatter in sawtooth periods obtained during selected time intervals in the simulations compared with the corresponding statistical measures obtained from experimental data. It is found that the results are affected systematically by the fraction of magnetic reconnection during each sawtooth crash and by the model that is used for transport within the sawtooth mixing region. The physical processes that affect the sawtooth cycle in the simulations are found to involve an interaction among magnetic diffusion, reheating within the sawtooth mixing region, the instabilities that trigger a sawtooth crash in the Porcelli model, and the magnetic reconnection produced by each sawtooth crash. [1] F. Porcelli, et al., Plasma Phys. Contol. Fusion 38 (1996) 2163. [2] A.H. Kritz, et al., Comput. Phys. Commun. 164 (2004) 108; http://w3.pppl.gov/NTCC. Supported by DOE DE-FG02-92-ER-54141.

Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production.

PubMed

Steglich, Matthias; Hofmann, Julia D; Helmecke, Julia; Sikorski, Johannes; Spröer, Cathrin; Riedel, Thomas; Bunk, Boyke; Overmann, Jörg; Neumann-Schaal, Meina; Nübel, Ulrich

2018-01-01

We report the frequent, convergent loss of two genes encoding the substrate-binding protein and the ATP-binding protein of an ATP-binding cassette (ABC) transporter from the genomes of unrelated Clostridioides difficile strains. This specific genomic deletion was strongly associated with the reduced uptake of tyrosine and phenylalanine and production of derived Stickland fermentation products, including p -cresol, suggesting that the affected ABC transporter had been responsible for the import of aromatic amino acids. In contrast, the transporter gene loss did not measurably affect bacterial growth or production of enterotoxins. Phylogenomic analysis of publically available genome sequences indicated that this transporter gene deletion had occurred multiple times in diverse clonal lineages of C. difficile , with a particularly high prevalence in ribotype 027 isolates, where 48 of 195 genomes (25%) were affected. The transporter gene deletion likely was facilitated by the repetitive structure of its genomic location. While at least some of the observed transporter gene deletions are likely to have occurred during the natural life cycle of C. difficile , we also provide evidence for the emergence of this mutation during long-term laboratory cultivation of reference strain R20291.

Convergent Loss of ABC Transporter Genes From Clostridioides difficile Genomes Is Associated With Impaired Tyrosine Uptake and p-Cresol Production

PubMed Central

Steglich, Matthias; Hofmann, Julia D.; Helmecke, Julia; Sikorski, Johannes; Spröer, Cathrin; Riedel, Thomas; Bunk, Boyke; Overmann, Jörg; Neumann-Schaal, Meina; Nübel, Ulrich

2018-01-01

We report the frequent, convergent loss of two genes encoding the substrate-binding protein and the ATP-binding protein of an ATP-binding cassette (ABC) transporter from the genomes of unrelated Clostridioides difficile strains. This specific genomic deletion was strongly associated with the reduced uptake of tyrosine and phenylalanine and production of derived Stickland fermentation products, including p-cresol, suggesting that the affected ABC transporter had been responsible for the import of aromatic amino acids. In contrast, the transporter gene loss did not measurably affect bacterial growth or production of enterotoxins. Phylogenomic analysis of publically available genome sequences indicated that this transporter gene deletion had occurred multiple times in diverse clonal lineages of C. difficile, with a particularly high prevalence in ribotype 027 isolates, where 48 of 195 genomes (25%) were affected. The transporter gene deletion likely was facilitated by the repetitive structure of its genomic location. While at least some of the observed transporter gene deletions are likely to have occurred during the natural life cycle of C. difficile, we also provide evidence for the emergence of this mutation during long-term laboratory cultivation of reference strain R20291. PMID:29867812

Cars, corporations, and commodities: consequences for the social determinants of health.

PubMed

Woodcock, James; Aldred, Rachel

2008-02-21

Social epidemiologists have drawn attention to health inequalities as avoidable and inequitable, encouraging thinking beyond proximal risk factors to the causes of the causes. However, key debates remain unresolved including the contribution of material and psychosocial pathways to health inequalities. Tools to operationalise social factors have not developed in tandem with conceptual frameworks, and research has often remained focused on the disadvantaged rather than on forces shaping population health across the distribution. Using the example of transport, we argue that closer attention to social processes (capital accumulation and motorisation) and social forms (commodity, corporation, and car) offers a way forward. Corporations tied to the car, primarily oil and vehicle manufacturers, are central to the world economy. Key drivers in establishing this hegemony are the threat of violence from motor vehicles and the creation of distance through the restructuring of place. Transport matters for epidemiology because the growth of mass car ownership is environmentally unsustainable and affects population health through a myriad of pathways. Starting from social forms and processes, rather than their embodiment as individual health outcomes and inequalities, makes visible connections between road traffic injuries, obesity, climate change, underdevelopment of oil producing countries, and the huge opportunity cost of the car economy. Methodological implications include a movement-based understanding of how place affects health and a process-orientated integration of material and psychosocial explanations that, while materially based, contests assumptions of automatic benefits from economic growth. Finally, we identify car and oil corporations as anti-health forces and suggest collaboration with them creates conflicts of interest.

Sources, transformations, and hydrological processes that control stream nitrate and dissolved organic matter concentrations during snowmelt in an upland forest

USGS Publications Warehouse

Sebestyen, Stephen D.; Boyer, Elizabeth W.; Shanley, James B.; Kendall, Carol; Doctor, Daniel H.; Aiken, George R.; Ohte, Nobuhito

2008-01-01

We explored catchment processes that control stream nutrient concentrations at an upland forest in northeastern Vermont, USA, where inputs of nitrogen via atmospheric deposition are among the highest in the nation and affect ecosystem functioning. We traced sources of water, nitrate, and dissolved organic matter (DOM) using stream water samples collected at high frequency during spring snowmelt. Hydrochemistry, isotopic tracers, and end‐member mixing analyses suggested the timing, sources, and source areas from which water and nutrients entered the stream. Although stream‐dissolved organic carbon (DOC) and dissolved organic nitrogen (DON) both originated from leaching of soluble organic matter, flushing responses between these two DOM components varied because of dynamic shifts of hydrological flow paths and sources that supply the highest concentrations of DOC and DON. High concentrations of stream water nitrate originated from atmospheric sources as well as nitrified sources from catchment soils. We detected nitrification in surficial soils during late snowmelt which affected the nitrate supply that was available to be transported to streams. However, isotopic tracers showed that the majority of nitrate in upslope surficial soil waters after the onset of snowmelt originated from atmospheric sources. A fraction of the atmospheric nitrogen was directly delivered to the stream, and this finding highlights the importance of quick flow pathways during snowmelt events. These findings indicate that interactions among sources, transformations, and hydrologic transport processes must be deciphered to understand why concentrations vary over time and over space as well as to elucidate the direct effects of human activities on nutrient dynamics in upland forest streams.

Cars, corporations, and commodities: Consequences for the social determinants of health

PubMed Central

Woodcock, James; Aldred, Rachel

2008-01-01

Social epidemiologists have drawn attention to health inequalities as avoidable and inequitable, encouraging thinking beyond proximal risk factors to the causes of the causes. However, key debates remain unresolved including the contribution of material and psychosocial pathways to health inequalities. Tools to operationalise social factors have not developed in tandem with conceptual frameworks, and research has often remained focused on the disadvantaged rather than on forces shaping population health across the distribution. Using the example of transport, we argue that closer attention to social processes (capital accumulation and motorisation) and social forms (commodity, corporation, and car) offers a way forward. Corporations tied to the car, primarily oil and vehicle manufacturers, are central to the world economy. Key drivers in establishing this hegemony are the threat of violence from motor vehicles and the creation of distance through the restructuring of place. Transport matters for epidemiology because the growth of mass car ownership is environmentally unsustainable and affects population health through a myriad of pathways. Starting from social forms and processes, rather than their embodiment as individual health outcomes and inequalities, makes visible connections between road traffic injuries, obesity, climate change, underdevelopment of oil producing countries, and the huge opportunity cost of the car economy. Methodological implications include a movement-based understanding of how place affects health and a process-orientated integration of material and psychosocial explanations that, while materially based, contests assumptions of automatic benefits from economic growth. Finally, we identify car and oil corporations as anti-health forces and suggest collaboration with them creates conflicts of interest. PMID:18291031

Mechanistic modeling of microbial interactions at pore to profile scale resolve methane emission dynamics from permafrost soil

NASA Astrophysics Data System (ADS)

Ebrahimi, Ali; Or, Dani

2017-05-01

The sensitivity of polar regions to raising global temperatures is reflected in rapidly changing hydrological processes associated with pronounced seasonal thawing of permafrost soil and increased biological activity. Of particular concern is the potential release of large amounts of soil carbon and stimulation of other soil-borne greenhouse gas emissions such as methane. Soil methanotrophic and methanogenic microbial communities rapidly adjust their activity and spatial organization in response to permafrost thawing and other environmental factors. Soil structural elements such as aggregates and layering affect oxygen and nutrient diffusion processes thereby contributing to methanogenic activity within temporal anoxic niches (hot spots). We developed a mechanistic individual-based model to quantify microbial activity dynamics in soil pore networks considering transport processes and enzymatic activity associated with methane production in soil. The model was upscaled from single aggregates to the soil profile where freezing/thawing provides macroscopic boundary conditions for microbial activity at different soil depths. The model distinguishes microbial activity in aerate bulk soil from aggregates (or submerged profile) for resolving methane production and oxidation rates. Methane transport pathways by diffusion and ebullition of bubbles vary with hydration dynamics. The model links seasonal thermal and hydrologic dynamics with evolution of microbial community composition and function affecting net methane emissions in good agreement with experimental data. The mechanistic model enables systematic evaluation of key controlling factors in thawing permafrost and microbial response (e.g., nutrient availability and enzyme activity) on long-term methane emissions and carbon decomposition rates in the rapidly changing polar regions.

78 FR 19357 - Allocation of Public Transportation Emergency Relief Funds in Response to Hurricane Sandy

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-29

... DEPARTMENT OF TRANSPORTATION Federal Transit Administration Allocation of Public Transportation...) announces the allocation of $2,000,000,000 under the Public Transportation Emergency Relief Program... after an emergency or major disaster that affects public transportation systems. The Appropriations Act...

Evidence and age estimation of mass wasting at the distal lobe of the Congo deep-sea fan

NASA Astrophysics Data System (ADS)

Croguennec, Claire; Ruffine, Livio; Dennielou, Bernard; Baudin, François; Caprais, Jean-Claude; Guyader, Vivien; Bayon, Germain; Brandily, Christophe; Le Bruchec, Julie; Bollinger, Claire; Germain, Yoan; Droz, Laurence; Babonneau, Nathalie; Rabouille, Christophe

2017-08-01

On continental margins, sulfate reduction occurs within the sedimentary column. It is coupled with the degradation of organic matter and the anaerobic oxidation of methane. These processes may be significantly disturbed by sedimentary events, leading to transient state profiles for the involved chemical species. Yet, little is known about the impact of turbidity currents and mass wasting on the migration of chemical species and the redox reactions in which they are involved. Due to its connection to the River, the Congo deep-sea fan continuously receives huge amount of organic matter-rich sediments primarily transported by turbidity currents, which impact on the development of the associated ecosystems (Rabouille et al., 2017). Thus, it is well suited to better understand causal relationships between sedimentary events and fluid flow path, with consequences on the zonation of early diagenesis sequences. Here, we combined sedimentological observations with geochemical analyses of pore-water and sediment samples to explore how sedimentary instabilities affected the migration of methane and the distribution of organic matter within the sedimentary column. The results unveiled mass wasting processes affecting recent turbiditic and pelagic deposits, and are interpreted as being slides/ slumps and debrites. Two slides were responsible for the exhumation of an organic matter-rich sedimentary block of more than 5 m thick and the movement of a methane-rich sedimentary block, while turbidity currents enable the intercalation of sandy intervals within a pelagic clay layer. The youngest slide promoted the development of two Sulfate Methane Transition Zones (SMTZ), and may have possibly triggered a lateral migration of methane. Numerical simulation of the sulfate profile indicates that the youngest sedimentary event has occurred around a century ago. Our study emphasizes that turbidity currents and sedimentary instabilities can significantly affect the transport paths and the distribution of both methane and organic matter in the terminal lobe complex, with consequences on geochemical zonation of the sequential early diagenetic processes within the sedimentary column.

Transport and Reactivity of Engineered Nanoparticles in Partially Saturated Porous Media

NASA Astrophysics Data System (ADS)

Dror, I.; Yecheskel, Y.; Berkowitz, B.

2015-12-01

Engineered nanoparticles (ENPs) are being produced in increasing amounts and have numerous applications in a variety of products and industrial processes. The same properties that make these substances so appealing may also cause them to act as persistent and toxic pollutants. The post-use release of ENPs to the environment is inevitable and soil appears to be one of the largest sinks of these potential contaminants. To date, despite the significant attention that ENP behavior in the environment has received, only a few studies have considered the fate and transport of ENPs in partially saturated systems. Here, we report measurements on the transport and fate of three commonly used ENPs - silver (Ag), gold (Au) and zinc oxide (ZnO) - in partially saturated porous media. The results show that ENP interactions with the solid matrix and solution components affect the fate of the ENPs and their transport. The negatively charged ENPs (AgNPs and AuNPs) are shown to be mobile in sand (which is also negatively charged) under various conditions, including water saturation levels and inlet concentration, with transport behavior resembling conservative tracer movement. Various aging scenarios were considered and the interaction of AgNPs with sulfides, chlorides, and calcium ions, all of which are known to interact and change AgNP properties, are shown to affect AgNP fate; however, in some cases, the changed particles remained suspended in solution and mobile. The positively charged ZnO showed very low mobility, but when humic acid was present in the inlet solution, interactions leading to enhanced mobility were observed. The presence of humic acid also changes ENP size and surface charge, transforming them to negatively charged larger aggregates that can be transported through the sand. Finally, remobilization of particles that were retained in the porous media was also demonstrated for ZnO ENPs, indicating possible release of entrapped ENPs upon changes in solution chemistry.

Expected changes in transportation demand in Virginia by 2025.

DOT National Transportation Integrated Search

2003-01-01

To support Virginia's initiatives to design a multimodal transportation plan for the year 2025, this report summarizes how transportation demand is expected to change over the next two decades. Four broad areas affecting transportation demand are exp...

23 CFR 450.320 - Congestion management process in transportation management areas.

Code of Federal Regulations, 2014 CFR

2014-04-01

... 23 Highways 1 2014-04-01 2014-04-01 false Congestion management process in transportation... Programming § 450.320 Congestion management process in transportation management areas. (a) The transportation planning process in a TMA shall address congestion management through a process that provides for safe and...

23 CFR 450.320 - Congestion management process in transportation management areas.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 23 Highways 1 2011-04-01 2011-04-01 false Congestion management process in transportation... Programming § 450.320 Congestion management process in transportation management areas. (a) The transportation planning process in a TMA shall address congestion management through a process that provides for safe and...

23 CFR 450.320 - Congestion management process in transportation management areas.

Code of Federal Regulations, 2013 CFR

2013-04-01

... 23 Highways 1 2013-04-01 2013-04-01 false Congestion management process in transportation... Programming § 450.320 Congestion management process in transportation management areas. (a) The transportation planning process in a TMA shall address congestion management through a process that provides for safe and...

Intestinal Transport Characteristics and Metabolism of C-Glucosyl Dihydrochalcone, Aspalathin.

PubMed

Bowles, Sandra; Joubert, Elizabeth; de Beer, Dalene; Louw, Johan; Brunschwig, Christel; Njoroge, Mathew; Lawrence, Nina; Wiesner, Lubbe; Chibale, Kelly; Muller, Christo

2017-03-30

Insight into the mechanisms of intestinal transport and metabolism of aspalathin will provide important information for dose optimisation, in particular for studies using mouse models. Aspalathin transportation across the intestinal barrier (Caco-2 monolayer) tested at 1-150 µM had an apparent rate of permeability (P app ) typical of poorly absorbed compounds (1.73 × 10 -6 cm/s). Major glucose transporters, sodium glucose linked transporter 1 (SGLT1) and glucose transporter 2 (GLUT2), and efflux protein (P-glycoprotein, PgP) (1.84 × 10 -6 cm/s; efflux ratio: 1.1) were excluded as primary transporters, since the P app of aspalathin was not affected by the presence of specific inhibitors. The P app of aspalathin was also not affected by constituents of aspalathin-enriched rooibos extracts, but was affected by high glucose concentration (20.5 mM), which decreased the P app value to 2.9 × 10 -7 cm/s. Aspalathin metabolites (sulphated, glucuronidated and methylated) were found in mouse urine, but not in blood, following an oral dose of 50 mg/kg body weight of the pure compound. Sulphates were the predominant metabolites. These findings suggest that aspalathin is absorbed and metabolised in mice to mostly sulphate conjugates detected in urine. Mechanistically, we showed that aspalathin is not actively transported by the glucose transporters, but presumably passes the monolayer paracellularly.

Transport of gadolinium- and arsenic-based pharmaceuticals in saturated soil under various redox conditions.

PubMed

Menahem, Adi; Dror, Ishai; Berkowitz, Brian

2016-02-01

The release of pharmaceuticals and personal care products (PPCPs) to the soil-water environment necessitates understanding of PPCP transport behavior under conditions that account for dynamic flow and varying redox states. This study investigates the transport of two organometallic PPCPs, Gd-DTPA and roxarsone (arsenic compound) and their metal salts (Gd(NO3)3, AsNaO2); Gd-DTPA is used widely as a contrasting agent for MRI, while roxarsone is applied extensively as a food additive in the broiler poultry industry. Here, we present column experiments using sand and Mediterranean red sandy clay soil, performed under several redox conditions. The metal salts were almost completely immobile. In contrast, transport of Gd-DTPA and roxarsone was affected by the soil type. Roxarsone was also affected by the different redox conditions, showing delayed breakthrough curves as the redox potential became more negative due to biological activity (chemically-strong reducing conditions did not affect the transport). Mechanisms that include adsorptive retardation for aerobic and nitrate-reducing conditions, and non-adsorptive retardation for iron-reducing, sulfate-reducing and biologically-strong reducing conditions, are suggested to explain the roxarsone behavior. Gd-DTPA is found to be a stable complex, with potential for high mobility in groundwater systems, whereas roxarsone transport through groundwater systems is affected by redox environments, demonstrating high mobility under aerobic and nitrate-reducing conditions and delayed transport under iron-reducing, sulfate-reducing and biologically-strong reducing conditions. Copyright © 2015 Elsevier Ltd. All rights reserved.

DsSWEET17, a Tonoplast-Localized Sugar Transporter from Dianthus spiculifolius, Affects Sugar Metabolism and Confers Multiple Stress Tolerance in Arabidopsis.

PubMed

Zhou, Aimin; Ma, Hongping; Feng, Shuang; Gong, Shufang; Wang, Jingang

2018-05-24

Plant SWEETs (Sugars Will Eventually be Exported Transporters) affect the growth of plants by regulating the transport of sugar from source to sink and its intracellular transport between different organelles. In this study, DsSWEET17 from Dianthus spiculifolius was identified and characterized. Real-time quantitative PCR analysis revealed that the expression of DsSWEET17 was affected by exogenous application of fructose and glucose as well as under salt, osmotic, and oxidation stress. Colocalization experiments showed that the DsSWEET17-GFP (green fluorescent protein) fusion protein was localized to the FM4-64-labeled tonoplasts in Arabidopsis . Compared to the wild type, the transgenic Arabidopsis seedlings overexpressing DsSWEET17 had longer roots, greater fresh weight, and a faster root growth upon exogenous application of fructose. Furthermore, transgenic Arabidopsis seedlings had significantly higher fructose accumulation than was observed for the wild-type seedlings. The analysis of root length revealed that transgenic Arabidopsis had higher tolerance to salt, osmotic, and oxidative stresses. Taken together, our results suggest that DsSWEET17 may be a tonoplast sugar transporter, and its overexpression affects sugar metabolism and confers multiple stress tolerance in Arabidopsis .

Atmospheric transport of mold spores in clouds of desert dust

USGS Publications Warehouse

Shinn, E.A.; Griffin, Dale W.; Seba, D.B.

2003-01-01

Fungal spores can be transported globally in clouds of desert dust. Many species of fungi (commonly known as molds) and bacteria--including some that are human pathogens--have characteristics suited to long-range atmospheric transport. Dust from the African desert can affect air quality in Africa, Europe, the Middle East, and the Americas. Asian desert dust can affect air quality in Asia, the Arctic, North America, and Europe. Atmospheric exposure to mold-carrying desert dust may affect human health directly through allergic induction of respiratory stress. In addition, mold spores within these dust clouds may seed downwind ecosystems in both outdoor and indoor environments.

Effects of bicarbonate on lithium transport in human red cells

PubMed Central

1978-01-01

Lithium influx into human erythrocytes increased 12-fold, when chloride was replaced with bicarbonate in a 150 mM lithium medium (38 degrees C. pH 7.4). The increase was linearly related to both lithium- and bicarbonate concentration, and was completely eliminated by the amino reagent 4, 4'- diisothiocyanostilbene-2,2'-disulfonic acid (DIDS). DIDS binds to an integral membrane protein (mol wt approximately 10(5) dalton) involved in anion exchange. Inhibition of both anion exchange and of bicarbonate-stimulated lithium influx was linearly related to DIDS binding. 1.1 X 10(6) DIDS molecules per cell caused complete inhibition of both processes. Both Cl- and Li+ can apparently be transported by the anion transport mechanism. The results support our previous proposal that bicarbonate-induced lithium permeability is due to transport of lithium-carbonate ion pairs (LiCO-3). DIDS-sensitive lithium influx had a high activation energy (24 kcal/mol), compatible with transport by the anion exchange mechanism. We have examined how variations of passive lithium permeability, induced by bicarbonate, affect the sodium-driven lithium counter-transport in human erythrocytes. The ability of the counter-transport system to establish a lithium gradient across the membrane decrease linearly with bicarbonate concentration in the medium. The counter-transport system was unaffected by DIDS treatement. At a plasma bicarbonate concentration of 24 mM, two-thirds of the lithium influx is mediated by the bicarbonate-stimulated pathway, and the fraction will increase significantly in metabolic alkalosis. PMID:670928

Modeling microbial processes in porous media

NASA Astrophysics Data System (ADS)

Murphy, Ellyn M.; Ginn, Timothy R.

The incorporation of microbial processes into reactive transport models has generally proceeded along two separate lines of investigation: (1) transport of bacteria as inert colloids in porous media, and (2) the biodegradation of dissolved contaminants by a stationary phase of bacteria. Research over the last decade has indicated that these processes are closely linked. This linkage may occur when a change in metabolic activity alters the attachment/detachment rates of bacteria to surfaces, either promoting or retarding bacterial transport in a groundwater-contaminant plume. Changes in metabolic activity, in turn, are controlled by the time of exposure of the microbes to electron acceptors/donor and other components affecting activity. Similarly, metabolic activity can affect the reversibility of attachment, depending on the residence time of active microbes. Thus, improvements in quantitative analysis of active subsurface biota necessitate direct linkages between substrate availability, metabolic activity, growth, and attachment/detachment rates. This linkage requires both a detailed understanding of the biological processes and robust quantitative representations of these processes that can be tested experimentally. This paper presents an overview of current approaches used to represent physicochemical and biological processes in porous media, along with new conceptual approaches that link metabolic activity with partitioning of the microorganism between the aqueous and solid phases. Résumé L'introduction des processus microbiologiques dans des modèles de transport réactif a généralement suivi deux voies différentes de recherches: (1) le transport de bactéries sous forme de colloïdes inertes en milieu poreux, et (2) la biodégradation de polluants dissous par une phase stationnaire de bactéries. Les recherches conduites au cours des dix dernières années indiquent que ces processus sont intimement liés. Cette liaison peut intervenir lorsqu'un changement dans l'activité métabolique modifie les taux de fixation/libération de bactéries des surfaces, soit en facilitant, soit en retardant le transport bactérien dans le panache de polluant de l'eau souterraine. Des changements de l'activité métabolique peuvent en retour être contrôlés par le temps d'exposition des microbes à des donneurs ou à des accepteurs d'électrons et à d'autres composés affectant cette activité. De façon similaire, l'activité métabolique peut affecter la réversibilité de la fixation, en fonction du temps de séjour des microbes actifs. Ainsi, les améliorations de l'analyse quantitative des organismes souterrains nécessitent d'établir des liens directs entre les possibilités du substrat, l'activité métabolique, la croissance et les taux de fixation/libération. Cette liaison nécessite à la fois une compréhension détaillée des processus biologiques et des représentations quantitatives robustes de ces processus qui puissent être testées expérimentalement. Cet article présente une revue des approches courantes utilisées pour représenter les processus physio-chimiques et biologiques en milieu poreux, en même temps que de nouvelles approches conceptuelles qui associent l'activité métabolique à la répartition des micro-organismes entre les phases aqueuse et solide. Resumen La incorporación de los procesos microbianos en los modelos de transporte reactivos ha procedido tradicionalmente a lo largo de dos líneas de investigación independientes: (1) el transporte de bacterias como coloides inertes en el medio poroso, y (2) la biodegradación de los contaminantes disueltos por una fase estacionaria de bacterias. En los últimos años se ha comprobado que estos dos procesos están muy interrelacionados. En concreto, un cambio en la actividad metabólica puede alterar la relación de adsorción/desorción de las bacterias, favoreciendo o retardando el transporte bacteriano en un penacho de contaminación. A su vez, los cambios en la actividad metabólica están controlados, entre otros factores, por el tiempo de exposición de los microbios a los receptores/donantes de electrones. Además, la actividad metabólica puede afectar la reversibilidad de la adsorción, en función del tiempo de residencia de los microbios activos. Así, el análisis cuantitativo de la actividad subsuperficial biótica necesita de un estudio detallado de las conexiones entre disponibilidad del substrato, actividad metabólica, crecimiento y relación de adsorción/desorción, lo que requiere tanto un conocimiento de los procesos biológicos, como una representación cuantitativa robusta de dichos procesos, comprobable experimentalmente. Este artículo presenta una revisión de los métodos actuales para representar los procesos fisioquímicos y biológicos en el medio poroso, además de nuevas metodologías para relacionar la actividad metabólica con el fraccionamiento de los microorganismos entre las fases sólida y acuosa.

Modeling Land Application of Food-Processing Wastewater in the Central Valley, California

NASA Astrophysics Data System (ADS)

Rubin, Y.; Benito, P.; Miller, G.; McLaughlin, J.; Hou, Z.; Hermanowicz, S.; Mayer, U.

2007-12-01

California's Central Valley contains over 640 food-processing plants, serving a multi-billion dollar agricultural industry. These processors consume approximately 7.9 x 107 m3 of water per year. Approximately 80% of these processors discharge the resulting wastewater, which is typically high in organic matter, nitrogen, and salts, to land, and many of these use land application as a treatment method. Initial investigations revealed elevated salinity levels to be the most common form of groundwater degradation near land application sites, followed by concentrations of nitrogen compounds, namely ammonia and nitrate. Enforcement actions have been taken against multiple food processors, and the regulatory boards have begun to re-examine the land disposal permitting process. This paper summarizes a study that was commissioned in support of these actions. The study has multiple components which will be reviewed briefly, including: (1) characterization of the food-processing related waste stream; (2) fate and transport of the effluent waste stream in the unsaturated zone at the land application sites; (3) fate and transport of the effluent waste stream at the regional scale; (4) predictive uncertainty due to spatial variability and data scarcity at the land application sites and at the regional scale; (5) problem mitigation through off-site and in-situ actions; (6) long-term solutions. The emphasis of the talk will be placed on presenting and demonstrating a stochastic framework for modeling the transport and attenuation of these wastes in the vadose zone and in the saturated zone, and the related site characterization needs, as affected by site conditions, water table depth, waste water application rate, and waste constituent concentrations.

Evaluation of dispersivity coefficients by means of a laboratory image analysis.

PubMed

Citarella, Donato; Cupola, Fausto; Tanda, Maria Giovanna; Zanini, Andrea

2015-01-01

This paper describes the application of an innovative procedure that allows the estimation of longitudinal and transverse dispersivities in an experimental plume devised in a laboratory sandbox. The phenomenon of transport in porous media is studied using sodium fluorescein as tracer. The fluorescent excitation was achieved by using blue light and the concentration data were obtained through the processing of side wall images collected with a high resolution color digital camera. After a calibration process, the relationship between the luminosity of the emitted fluorescence and the fluorescein concentration was determined at each point of the sandbox. The relationships were used to describe the evolution of the transport process quantitatively throughout the entire domain. Some check tests were performed in order to verify the reliability of the experimental device. Numerical flow and transport models of the sandbox were developed and calibrated comparing computed and observed flow rates and breakthrough curves. The estimation of the dispersivity coefficients was carried out by analyzing the concentration field deduced from the images collected during the experiments; the dispersivity coefficients were evaluated in the domain zones where the tracer affected the porous medium under the hypothesis that the transport phenomenon is described by advection-dispersion equation (ADE) and by computing the differential components of the concentration by means of a numerical leap-frog scheme. The values determined agree with the ones referred in literature for similar media and with the coefficients obtained by calibrating the numerical model. Very interesting considerations have been made from the analysis of the performance of the methodology at different locations in the flow domain and phases of the plume evolution. Copyright © 2014 Elsevier B.V. All rights reserved.

Prediction of the fate and transport processes of atrazine in a reservoir.

PubMed

Chung, Se-Woong; Gu, Roy R

2009-07-01

The fate and transport processes of a toxic chemical such as atrazine, an herbicide, in a reservoir are significantly influenced by hydrodynamic regimes of the reservoir. The two-dimensional (2D) laterally-integrated hydrodynamics and mass transport model, CE-QUAL-W2, was enhanced by incorporating a submodel for toxic contaminants and applied to Saylorville Reservoir, Iowa. The submodel describes the physical, chemical, and biological processes and predicts unsteady vertical and longitudinal distributions of a toxic chemical. The simulation results from the enhanced 2D reservoir model were validated by measured temperatures and atrazine concentrations in the reservoir. Although a strong thermal stratification was not identified from both observed and predicted water temperatures, the spatial variation of atrazine concentrations was largely affected by seasonal flow circulation patterns in the reservoir. In particular, the results showed the effect of flow circulation on spatial distribution of atrazine during summer months as the river flow formed an underflow within the reservoir and resulted in greater concentrations near the surface of the reservoir. Atrazine concentrations in the reservoir peaked around the end of May and early June. A good agreement between predicted and observed times and magnitudes of peak concentrations was obtained. The use of time-variable decay rates of atrazine led to more accurate prediction of atrazine concentrations, while the use of a constant half-life (60 days) over the entire period resulted in a 40% overestimation of peak concentrations. The results provide a better understanding of the fate and transport of atrazine in the reservoir and information useful in the development of reservoir operation strategies with respect to timing, amount, and depth of withdrawal.

Effects of catastrophic events on transportation system management and operations : comparative analysis

DOT National Transportation Integrated Search

2004-05-01

In order to provide a better understanding of how the surface transportation system is both : affected and utilized in an emergency situation, the U.S. Department of Transportation : Intelligent Transportation Systems (ITS) Joint Program Office and t...

The inter-relationship of ascorbate transport, metabolism and mitochondrial, plastidic respiration.

PubMed

Szarka, András; Bánhegyi, Gábor; Asard, Han

2013-09-20

Ascorbate, this multifaceted small molecular weight carbohydrate derivative, plays important roles in a range of cellular processes in plant cells, from the regulation of cell cycle, through cell expansion and senescence. Beyond these physiological functions, ascorbate has a critical role in responses to abiotic stresses, such as high light, high salinity, or drought. The biosynthesis, recycling, and intracellular transport are important elements of the balancing of ascorbate level to the always-changing conditions and demands. A bidirectional tight relationship was described between ascorbate biosynthesis and the mitochondrial electron transfer chain (mETC), since L-galactono-1,4-lactone dehydrogenase (GLDH), the enzyme catalyzing the ultimate step of ascorbate biosynthesis, uses oxidized cytochrome c as the only electron acceptor and has a role in the assembly of Complex I. A similar bidirectional relationship was revealed between the photosynthetic apparatus and ascorbate biosynthesis since the electron flux through the photosynthetic ETC affects the biosynthesis of ascorbate and the level of ascorbate could affect photosynthesis. The details of this regulatory network of photosynthetic electron transfer, respiratory electron transfer, and ascorbate biosynthesis are still not clear, as are the potential regulatory role and the regulation of intracellular ascorbate transport and fluxes. The elucidation of the role of ascorbate as an important element of the network of photosynthetic, respiratory ETC and tricarboxylic acid cycle will contribute to understanding plant cell responses to different stress conditions.

Gibberellins inhibit adventitious rooting in hybrid aspen and Arabidopsis by affecting auxin transport.

PubMed

Mauriat, Mélanie; Petterle, Anna; Bellini, Catherine; Moritz, Thomas

2014-05-01

Knowledge of processes involved in adventitious rooting is important to improve both fundamental understanding of plant physiology and the propagation of numerous plants. Hybrid aspen (Populus tremula × tremuloïdes) plants overexpressing a key gibberellin (GA) biosynthesis gene (AtGA20ox1) grow rapidly but have poor rooting efficiency, which restricts their clonal propagation. Therefore, we investigated the molecular basis of adventitious rooting in Populus and the model plant Arabidopsis. The production of adventitious roots (ARs) in tree cuttings is initiated from the basal stem region, and involves the interplay of several endogenous and exogenous factors. The roles of several hormones in this process have been characterized, but the effects of GAs have not been fully investigated. Here, we show that a GA treatment negatively affects the numbers of ARs produced by wild-type hybrid aspen cuttings. Furthermore, both hybrid aspen plants and intact Arabidopsis seedlings overexpressing AtGA20ox1, PttGID1.1 or PttGID1.3 genes (with a 35S promoter) produce few ARs, although ARs develop from the basal stem region of hybrid aspen and the hypocotyl of Arabidopsis. In Arabidopsis, auxin and strigolactones are known to affect AR formation. Our data show that the inhibitory effect of GA treatment on adventitious rooting is not mediated by perturbation of the auxin signalling pathway, or of the strigolactone biosynthetic and signalling pathways. Instead, GAs appear to act by perturbing polar auxin transport, in particular auxin efflux in hybrid aspen, and both efflux and influx in Arabidopsis. © 2014 The Authors The Plant Journal © 2014 John Wiley & Sons Ltd.

Coarse and fine sediment transportation patterns and causes downstream of the Three Gorges Dam

NASA Astrophysics Data System (ADS)

Li, Songzhe; Yang, Yunping; Zhang, Mingjin; Sun, Zhaohua; Zhu, Lingling; You, Xingying; Li, Kanyu

2017-11-01

Reservoir construction within a basin affects the process of water and sediment transport downstream of the dam. The Three Gorges Reservoir (TGR) affects the sediment transport downstream of the dam. The impoundment of the TGR reduced total downstream sediment. The sediment group d≤0.125 mm (fine particle) increased along the path, but the average was still below what existed before the reservoir impoundment. The sediments group d>0.125 mm (coarse particle) was recharged in the Yichang to Jianli reach, but showed a deposition trend downstream of Jianli. The coarse sediment in the Yichang to Jianli section in 2003 to 2007 was above the value before the TGR impoundment. However, the increase of both coarse and fine sediments in 2008 to 2014 was less than that in 2003 to 2007. The sediment retained in the dam is the major reason for the sediment reduction downstream. However, the retention in different river reaches is affected by riverbed coarsening, discharge, flow process, and conditions of lake functioning and recharging from the tributaries. The main conclusions derived from our study are as follows: 1) The riverbed in the Yichang to Shashi section was relatively coarse, thereby limiting the supply of fine and coarse sediments. The fine sediment supply was mainly controlled by TGR discharge, whereas the coarse sediment supply was controlled by the duration of high flow and its magnitude. 2) The supply of both coarse and fine sediments in the Shashi to Jianli section was controlled by the amount of total discharge. The sediment supply from the riverbed was higher in flood years than that in the dry years. The coarse sediment tended to deposit, and the deposition in the dry years was larger than that in the flood years. 3) The feeding of the fine sediment in the Luoshan to Hankou section was mainly from the riverbed. The supply in 2008 to 2014 was more than that in 2003 to 2007. Around 2010, the coarse sediments transited from depositing to scouring that was probably caused by the increased duration of high flow days. 4) Fine sediments appeared to be deposited in large amounts in the Hankou to Jiujiang section. The coarse sediment was fed by the riverbed scouring, and much more coarse sediments were recharged from the riverbed in the flood years than in the dry years. 5) In the Jiujiang to Datong section, the ratio of fine sediments from the Poyang Lake and that from the riverbed was 1: 2.82. The sediment from the riverbed scouring contributed more to the coarse sediment transportation. The contribution was mainly affected by the input by magnitude and duration of high flows.

The effects of Fe-oxidizing microorganisms on post-biostimulation permeability reduction and oxidative processes at the Rifle IFRC site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chan, Clara Sze-Yue

2015-07-02

Fe oxidation and biomineral formation is important in aquifers because the highly-reactive oxides can control the mobility of nutrients (e.g. phosphate, C) and metals (e.g. arsenic, uranium). Mineral formation also has the potential to affect hydrology, depending on the volume and distribution in pore spaces. In this exploratory study, we sought to understand how microbial Fe-oxidizers and their biominerals affect, and are affected by groundwater flow. As part of work at the Rifle aquifer in Colorado, we initially hypothesized that Fe-oxidizers were contributing to aquifer clogging problems associated with enhanced bioremediation. To demonstrate the presence of Fe-oxidizers in the Riflemore » aquifer, we enriched FeOM from groundwater samples, and isolated two novel chemolithotrophic, microaerophilic Fe-oxidizing Betaproteobacteria, Hydrogenophaga sp. P101 and Curvibacter sp. CD03. To image cells and biominerals in the context of pores, we developed a “micro-aquifer,” a sand-filled flow-through culture chamber that allows for imaging of sediment pore space with multiphoton confocal microscopy. Fe oxide biofilms formed on sand grains, demonstrating that FeOM produce Fe oxide sand coatings. Fe coatings are common on aquifer sands, and tend to sequester contaminants; however, it has never previously been shown that microbes are responsible for their formation. In contrast to our original hypothesis, the biominerals did not clog the mini-aquifer. Instead, Fe biofilm distribution was dynamic: they grew as coatings, then periodically sloughed off sand grains, with some flocs later caught in pore throats. This has implications for physical hydrology, including pore scale architecture, and element transport. The sloughing of coatings likely prevents the biominerals from clogging wells and aquifers, at least initially. Although attached biomineral coatings sequester Fe-associated elements (e.g. P, As, C, U), when biominerals detach, these elements are transported as particles through the aquifer. Our work shows that microbial mineralization impacts in aquifers are dynamic, and that the fate and transport of biomineral-associated elements depend not only on geochemical conditions, but also physical pore-scale processes.« less

Petersburg National Battlefield : alternative transportation feasibility study

DOT National Transportation Integrated Search

2012-11-13

This report studies the feasibility of alternative solutions to several transportation problems affecting Petersburg National Battlefield in Petersburg, Virginia. Current transportation problems include site-specific access issues, wayfinding and nav...

Long-range Transport of Aerosol at a Mountain Site in the Western Mediterranean Basin

NASA Astrophysics Data System (ADS)

Roberts, Greg; Corrigan, Craig; Ritchie, John; Pont, Véronique; Claeys, Marine; Sciare, Jean; Dulac, François

2016-04-01

The Mediterranean Region has been identified as sensitive to changes in the hydrological cycle, which could affect the water resources for millions of people by the turn of the century. However, prior to recent observations, most climate models have not accounted for the impacts of aerosol in this region. Past airborne studies have shown that aerosol sources from Europe and Africa are often transported throughout the lower troposphere; yet, because of their complex vertical distribution, it is a challenge to capture the variability and quantify the contribution of these sources to the radiative budget and precipitation processes. The PAEROS ChArMEx Mountain Experiment (PACMEx) complemented the regional activities by collecting aerosol data from atop a mountain on the island of Corsica, France in order to assess boundary layer / free troposphere atmospheric processes. In June/July 2013, PACMEx instruments were deployed at 2000 m.asl near the center of Corsica, France to complement ground-based aerosol observations at 550 m.asl on the northern peninsula, as well as airborne measurements. Comparisons between the peninsula site and the mountain site show similar general trends in aerosol properties; yet, differences in aerosol properties reveal the myriad transport mechanisms over the Mediterranean Basin. Using aerosol physicochemical data coupled with back trajectory analysis, different sources have been identified including Saharan dust transport, residual dust mixed with sea salt, anthropogenic emissions from Western Europe, and a period of biomass burning from Eastern Europe. Each period exhibits distinct signatures in the aerosol related to transport processes above and below the boundary layer. In addition, the total aerosol concentrations at the mountain site revealed a strong diurnal cycling the between the atmospheric boundary layer and the free troposphere, which is typical of mountain-top observations. PACMEx was funded by the National Science Foundation (NSF) as a cooperative collaboration with French research agencies (INSU-MISTRALS, ANR-ADRIMED, and Météo France).

Sources and Transport of Aerosol above the Boundary Layer over the Mediterranean Basin

NASA Astrophysics Data System (ADS)

Roberts, Greg; Corrigan, Craig; Ritchie, John; Pont, Veronique; Claeys, Marine; Sciare, Jean; Mallet, Marc; Dulac, François; Mihalopoulos, Nikos

2015-04-01

The Mediterranean Region has been identified as sensitive to changes in the hydrological cycle, which could affect the water resources for millions of people by the turn of the century. However, prior to recent observations, most climate models have not accounted for the impacts of aerosol in this region. Past airborne studies have shown that aerosol sources from Europe and Africa are often transported throughout the lower troposphere; yet, because of their complex vertical distribution, it is a challenge to capture the variability and quantify the contribution of these sources to the radiative budget and precipitation processes. The PAEROS ChArMEx Mountain Experiment (PACMEx) complemented the regional activities by collecting aerosol data from atop a mountain on the island of Corsica, France in order to assess boundary layer / free troposphere atmospheric processes. In June/July 2013, PACMEx instruments were deployed at 2000 m.asl near the center of Corsica, France to complement ground-based aerosol observations at 550 m.asl on the northern peninsula, as well as airborne measurements. Comparisons between the peninsula site and the mountain site show similar general trends in aerosol properties; yet, differences in aerosol properties reveal the myriad transport mechanisms over the Mediterranean Basin. Using aerosol physicochemical data coupled with back trajectory analysis, different sources have been identified including Saharan dust transport, residual dust mixed with sea salt, anthropogenic emissions from Western Europe, and a period of biomass burning from Eastern Europe. Each period exhibits distinct signatures in the aerosol related to transport processes above and below the boundary layer. In addition, the total aerosol concentrations at the mountain site revealed a strong diurnal cycling the between the atmospheric boundary layer and the free troposphere, which is typical of mountain-top observations. PACMEx was funded by the National Science Foundation (NSF) as a cooperative collaboration with French research agencies (INSU-MISTRALS, ANR-ADRIMED, and Météo France).